Citrus Sinensis ID: 004205
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 768 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | no | no | 0.877 | 0.890 | 0.425 | 1e-151 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.889 | 0.934 | 0.418 | 1e-149 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.946 | 0.938 | 0.399 | 1e-143 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.897 | 0.919 | 0.425 | 1e-141 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.670 | 0.638 | 0.228 | 4e-19 | |
| P0DD35 | 1169 | C5a peptidase OS=Streptoc | yes | no | 0.436 | 0.286 | 0.259 | 1e-12 | |
| P0DD34 | 1169 | C5a peptidase OS=Streptoc | N/A | no | 0.436 | 0.286 | 0.259 | 1e-12 | |
| Q5X9R0 | 1184 | C5a peptidase OS=Streptoc | N/A | no | 0.437 | 0.283 | 0.257 | 3e-12 | |
| Q8NZ80 | 1150 | C5a peptidase OS=Streptoc | N/A | no | 0.437 | 0.292 | 0.257 | 4e-12 | |
| P58099 | 1181 | C5a peptidase OS=Streptoc | N/A | no | 0.437 | 0.284 | 0.257 | 6e-12 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 535 bits (1378), Expect = e-151, Method: Compositional matrix adjust.
Identities = 300/705 (42%), Positives = 426/705 (60%), Gaps = 31/705 (4%)
Query: 74 QASHVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEES 133
A +Y+Y++ GF+ +LT ++A + PGV+SV P + LHTT + F+GL +
Sbjct: 62 SAELLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTA 121
Query: 134 MEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRK 193
P + +++VG +DTG+WPES S+SD G P P+ WKG CE+G F AS CNRK
Sbjct: 122 DLFP--EAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRK 179
Query: 194 VIGARYYMSGYEAEED-IVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGAR 252
+IGAR++ GYE+ I E+ RSPRD GHG+HT+STAAG V + G A+G AR
Sbjct: 180 LIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTAR 239
Query: 253 GGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIG 312
G AP AR+AVYK CW GC+ D+LAA D AI D V++LS+SLG DY+ D ++IG
Sbjct: 240 GMAPRARVAVYKVCWLGGCFSSDILAAIDKAIADNVNVLSMSLG--GGMSDYYRDGVAIG 297
Query: 313 SFHATSRGILVVASAGNEG-NEGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGES 371
+F A RGILV SAGN G + S++N+APW+ T+ A + DRDF + +LG+G NFTG
Sbjct: 298 AFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTG-- 355
Query: 372 LSLCKMNASARIISASEAYAGYFT-PYQSSYCLESSLNSTKARGKVLVCRHAESSTESKL 430
+SL K A + YAG + + C+ +L K +GK+++C + +++
Sbjct: 356 VSLFKGEALPDKL-LPFIYAGNASNATNGNLCMTGTLIPEKVKGKIVMC---DRGINARV 411
Query: 431 RKSMVVKEAGGVGMILVDEPGKD---VAIPFVIPSAVVGKKTGNKILSYISHTSKAISKI 487
+K VVK AGGVGMIL + VA ++P+ VG+K G+ I Y++ + I
Sbjct: 412 QKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASI 471
Query: 488 FPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVG--------- 538
TV+G +P+P VAAFSS+GPN++ P ILKPD+ APG+NI+AAW+ A G
Sbjct: 472 SILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSR 531
Query: 539 KMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKG 598
+++FNI+SGTSM+CPHV+G+A L+K+VHP WSP+AI+SA+MTTA K+ KP+ G
Sbjct: 532 RVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATG 591
Query: 599 RRGNAFDYGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDNSKCS-QK 657
+ FD+G+G ++P +PGLIYD DY FLC++ Y + V+R N C K
Sbjct: 592 KPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSK 651
Query: 658 LPAPYDLNYPSITVPNLK--GNFSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIF 715
+ DLNYPS V N+ G + TR+VT+VG + V S GV ++V P L F
Sbjct: 652 SYSVADLNYPSFAV-NVDGVGAYKYTRTVTSVGGAGTYSVKVTSETTGVKISVEPAVLNF 710
Query: 716 NSYGQKINFTVHFKLTS--PPKGYGFGYLSWKNGKLRVTSPLVVQ 758
+K ++TV F + S P FG + W +GK V SP+ +
Sbjct: 711 KEANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAIS 755
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 530 bits (1364), Expect = e-149, Method: Compositional matrix adjust.
Identities = 307/734 (41%), Positives = 426/734 (58%), Gaps = 51/734 (6%)
Query: 37 KVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQ 96
+Y+VYMG EDP H ML V + A S +++YK F GFA KLT+++
Sbjct: 32 NIYIVYMGRKL-EDPDSAHLHHRAMLEQVVGSTF--APESVLHTYKRSFNGFAVKLTEEE 88
Query: 97 ASQIAQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEESMEIPGFSTKNQVNIIVGFIDTGI 156
A +IA M GVVSVF N LHTT SWDF+G + +P S + + NI+VG +DTGI
Sbjct: 89 AEKIASMEGVVSVFLNEMNELHTTRSWDFLGF----PLTVPRRS-QVESNIVVGVLDTGI 143
Query: 157 WPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSF 216
WPESPSF D G P P KWKG CE+ F CNRK+IGAR Y G V
Sbjct: 144 WPESPSFDDEGFSPPPPKWKGTCETSNNFR---CNRKIIGARSYHIGRPISPGDVN---- 196
Query: 217 RSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDL 276
PRD++GHG+HTASTAAG V+ N GL G ARGG P+ARIA YK CW+ GC D D+
Sbjct: 197 -GPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDI 255
Query: 277 LAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEG-NEGS 335
LAA+DDAI DGV I+SLS+G P+ YF DAI+IGSFHA RGIL SAGN G N +
Sbjct: 256 LAAYDDAIADGVDIISLSVGGANPR-HYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFT 314
Query: 336 VTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFT 395
+L+PW+ ++AAS+ DR F +++ +G+G +F G S++ N ++S + F
Sbjct: 315 TASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFD-NQYYPLVSGRDIPNTGFD 373
Query: 396 PYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVA 455
S +C + S+N +GK++VC E+ K G +L+ +D A
Sbjct: 374 KSTSRFCTDKSVNPNLLKGKIVVC-------EASFGPHEFFKSLDGAAGVLMTSNTRDYA 426
Query: 456 IPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNP 515
+ +PS+V+ L YI + IF + T+L + AP V +FSS+GPN
Sbjct: 427 DSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNAS-APVVVSFSSRGPNRATK 485
Query: 516 EILKPDVTAPGLNIIAAWSPAVGKM-------QFNILSGTSMACPHVTGIATLIKAVHPS 568
+++KPD++ PG+ I+AAW P+V + FNI+SGTSM+CPH+TGIAT +K +P+
Sbjct: 486 DVIKPDISGPGVEILAAW-PSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPT 544
Query: 569 WSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLSPGLIYDAQPI 628
WSP+AIKSA+MTTA+ ++ P F YGSG +NP K + PGL+YDA
Sbjct: 545 WSPAAIKSALMTTASPMNARFNPQA---------EFAYGSGHVNPLKAVRPGLVYDANES 595
Query: 629 DYTVFLCSIGYDEKSLHLVTRDNSKC-SQKLPAPYDLNYPSITV---PNLKGNFSVTRSV 684
DY FLC GY+ +++ +T D S C S +DLNYPS + P+ N R++
Sbjct: 596 DYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTL 655
Query: 685 TNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLTSPPKGYGF-GYLS 743
T+V S Y+A++S+P G+T++V P L FN G + +FT+ + + KG+ L
Sbjct: 656 TSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSI--KGFVVSASLV 713
Query: 744 WKNGKLRVTSPLVV 757
W +G V SP+ +
Sbjct: 714 WSDGVHYVRSPITI 727
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Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 511 bits (1315), Expect = e-143, Method: Compositional matrix adjust.
Identities = 312/781 (39%), Positives = 442/781 (56%), Gaps = 54/781 (6%)
Query: 16 CYIFYLLVGVFLAENNICFSAKVYVVYM--GTTTGEDPLDVWRQHHQML--AVVHAGSME 71
C IF L F + ++ + Y+V + + T + + H L AV+ E
Sbjct: 9 CIIFLL----FCSSSSEILQKQTYIVQLHPNSETAKTFASKFDWHLSFLQEAVLGVEEEE 64
Query: 72 QAQASHV-YSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKRRLHTTHSWDFMGLMG 130
+ +S + YSY GFAA+LT+ +A + P VV+V P+ ++ TT+S+ F+GL G
Sbjct: 65 EEPSSRLLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSYKFLGLDG 124
Query: 131 EESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSC 190
+ + S Q I+G +DTG+WPESPSF D GMP P KWKG C+ GE+F++SSC
Sbjct: 125 FGNSGVWSKSRFGQ-GTIIGVLDTGVWPESPSFDDTGMPSIPRKWKGICQEGESFSSSSC 183
Query: 191 NRKVIGARYYMSGYEA----EEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGL 246
NRK+IGAR+++ G+ EE + S RDS+GHG+HTAST G V+ N G
Sbjct: 184 NRKLIGARFFIRGHRVANSPEESPNMPREYISARDSTGHGTHTASTVGGSSVSMANVLGN 243
Query: 247 AAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFS 306
AG ARG AP A IAVYK CW +GCY D+LAA D AI+D V +LSLSLG +
Sbjct: 244 GAGVARGMAPGAHIAVYKVCWFNGCYSSDILAAIDVAIQDKVDVLSLSLG--GFPIPLYD 301
Query: 307 DAISIGSFHATSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGA 365
D I+IG+F A RGI V+ +AGN G E SV N APW+ TI A + DR F + + L +G
Sbjct: 302 DTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRLANGK 361
Query: 366 NFTGESLSLCKMNASARIISASEAYAGYFT--PYQSSYCLESSLNSTKARGKVLVCRHAE 423
GESL K +A E Y T S +CL SL + RGK+++C +
Sbjct: 362 LLYGESLYPGKGIKNA----GREVEVIYVTGGDKGSEFCLRGSLPREEIRGKMVIC---D 414
Query: 424 SSTESKLRKSMVVKEAGGVGMILVD---EPGKDVAIPFVIPSAVVGKKTGNKILSYISHT 480
+ K VKEAGGV MIL + +D ++P+ ++G + +Y++ T
Sbjct: 415 RGVNGRSEKGEAVKEAGGVAMILANTEINQEEDSIDVHLLPATLIGYTESVLLKAYVNAT 474
Query: 481 SKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVG-- 538
K ++I TV+G AP VA FS++GP+ NP ILKPD+ APG+NIIAAW +G
Sbjct: 475 VKPKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPGVNIIAAWPQNLGPT 534
Query: 539 -------KMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKP 591
++ F ++SGTSM+CPHV+GI LI++ +P+WSP+AIKSA+MTTA D+ K
Sbjct: 535 GLPYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTADLYDRQGKA 594
Query: 592 ITVDPKGRRGNAFDYGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDN 651
I + F G+G +NP+K ++PGL+Y+ QP+DY +LC++G+ + +T N
Sbjct: 595 I--KDGNKPAGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSDILAITHKN 652
Query: 652 SKCS---QKLPAPYDLNYPSITVPNLKGNFS--VTRSVTNVGKPRSIYKAVVSSPVGVTV 706
C+ +K P + LNYPSI V +G + +TR VTNVG P SIY V +P G+ V
Sbjct: 653 VSCNGILRKNPG-FSLNYPSIAVIFKRGKTTEMITRRVTNVGSPNSIYSVNVKAPEGIKV 711
Query: 707 TVAPERLIFNSYGQKINFTVHFKLTSPPKG-----YGFGYLSWKNGK---LRVTSPLVVQ 758
V P+RL+F Q +++ V F L +G + G L+W N RV SP+ V
Sbjct: 712 IVNPKRLVFKHVDQTLSYRVWFVLKKKNRGGKVASFAQGQLTWVNSHNLMQRVRSPISVT 771
Query: 759 V 759
+
Sbjct: 772 L 772
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 502 bits (1293), Expect = e-141, Method: Compositional matrix adjust.
Identities = 318/748 (42%), Positives = 433/748 (57%), Gaps = 59/748 (7%)
Query: 39 YVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQAS 98
Y++Y+G ++ + + H +L+ ++ S E+A+ VYSY F FAAKL+ +A
Sbjct: 38 YIIYLGDRP-DNTEETIKTHINLLSSLNI-SQEEAKERKVYSYTKAFNAFAAKLSPHEAK 95
Query: 99 QIAQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWP 158
++ +M VVSV N R+LHTT SWDF+GL + K + ++I+G +DTGI P
Sbjct: 96 KMMEMEEVVSVSRNQYRKLHTTKSWDFVGLPLTAKRHL-----KAERDVIIGVLDTGITP 150
Query: 159 ESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRS 218
+S SF D G+ P PAKWKG C G N + CN K+IGA+Y+ + V RS
Sbjct: 151 DSESFLDHGLGPPPAKWKGSC--GPYKNFTGCNNKIIGAKYF-----KHDGNVPAGEVRS 203
Query: 219 PRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCW-DSGCYDVDLL 277
P D GHG+HT+ST AG VAN + G+A G ARG P AR+A+YK CW SGC D+D+L
Sbjct: 204 PIDIDGHGTHTSSTVAGVLVANASLYGIANGTARGAVPSARLAMYKVCWARSGCADMDIL 263
Query: 278 AAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEG-NEGSV 336
A F+ AI DGV I+S+S+ P DY SD+IS+GSFHA +GIL VASAGN+G + G+V
Sbjct: 264 AGFEAAIHDGVEIISISI--GGPIADYSSDSISVGSFHAMRKGILTVASAGNDGPSSGTV 321
Query: 337 TNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNA-SARIISASEAYAGYFT 395
TN PW+ T+AAS DR F S+I LG+G +F+G +S+ A S ++S +A
Sbjct: 322 TNHEPWILTVAASGIDRTFKSKIDLGNGKSFSGMGISMFSPKAKSYPLVSGVDAAKNTDD 381
Query: 396 PYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVA 455
Y + YC SL+ K +GKV+VCR ES +K GG G I+V + D A
Sbjct: 382 KYLARYCFSDSLDRKKVKGKVMVCRMGGGGVES------TIKSYGGAGAIIVSDQYLDNA 435
Query: 456 IPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNP 515
F+ P+ V G+ I YI+ T A + I + V + PAP VA+FSS+GPN +
Sbjct: 436 QIFMAPATSVNSSVGDIIYRYINSTRSASAVIQKTRQV--TIPAPFVASFSSRGPNPGSI 493
Query: 516 EILKPDVTAPGLNIIAAWSPAV------GKMQFN---ILSGTSMACPHVTGIATLIKAVH 566
+LKPD+ APG++I+AA++ G QF+ ILSGTSMACPHV G+A +K+ H
Sbjct: 494 RLLKPDIAAPGIDILAAFTLKRSLTGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSFH 553
Query: 567 PSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGN---AFDYGSGFLNPRKVLSPGLIY 623
P W+P+AIKSAI+T+A KPI+ RR N F YG G +NPR+ SPGL+Y
Sbjct: 554 PDWTPAAIKSAIITSA-------KPIS-----RRVNKDAEFAYGGGQINPRRAASPGLVY 601
Query: 624 DAQPIDYTVFLCSIGYDEKSLH-LVTRDNSKCSQKLPA-PYD-LNYPSITVPNLKGNFSV 680
D I Y FLC GY+ +L LV + CS +P +D LNYP+I + S
Sbjct: 602 DMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHDSLNYPTIQLTLRSAKTST 661
Query: 681 ----TRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLTS-PPK 735
R VTNVG P S+Y A V +P GV +TV P+ L F+ QK +F V K P
Sbjct: 662 LAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQMTPG 721
Query: 736 GYGFGYLSWKNGKLRVTSPLVVQVAPSD 763
G L WK+ + V SP+V+ SD
Sbjct: 722 KIVSGLLVWKSPRHSVRSPIVIYSPTSD 749
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 97.4 bits (241), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 141/617 (22%), Positives = 240/617 (38%), Gaps = 102/617 (16%)
Query: 81 YKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKRRLHTTHSWDFM-------------- 126
Y+ F GF+ KL + ++ + V +V+PN+ + D
Sbjct: 106 YEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYKTDNMKDKDVTISEDAVSPQMDDSA 165
Query: 127 GLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFN 186
+G G++ K I V IDTG+ P K GQ +
Sbjct: 166 PYIGANDAWDLGYTGKG---IKVAIIDTGVEYNHPDLK---------KNFGQYK------ 207
Query: 187 ASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPR-DSSGHGSHTASTAAGRYVANMNYRG 245
G + + Y+ +E PR +++ HG+H A T A
Sbjct: 208 ---------GYDFVDNDYDPKE-----TPTGDPRGEATDHGTHVAGTVA----------- 242
Query: 246 LAAGGARGGAPMARIAVYKTCWDSGCYDVD-LLAAFDDAIRDGVHILSLSLGPEAPQGDY 304
A G +G AP A + Y+ G + ++A + A++DG +++LSLG D+
Sbjct: 243 -ANGTIKGVAPDATLLAYRVLGPGGSGTTENVIAGVERAVQDGADVMNLSLGNSLNNPDW 301
Query: 305 FSDAISIGSFHATSRGILVVASAGNEGNEGSVTNLAPWMFTIAASSTDRDFTSEIVLGDG 364
A S A S G++ V S GN G G +T+ + T R+ I +G
Sbjct: 302 ---ATSTALDWAMSEGVVAVTSNGNSGPNG---------WTVGSPGTSRE---AISVGAT 346
Query: 365 ANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKA------RGKVLV 418
E +SA+++ ++ + +E+ + K GKV V
Sbjct: 347 QLPLNEYAVTFGSYSSAKVMGYNKEDDVKALNNKEVELVEAGIGEAKDFEGKDLTGKVAV 406
Query: 419 CRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVA--IP-FVIPSAVVGKKTGNKILS 475
+ + + K+ K+AG +GM++ + ++ +P +P+ + + G K++S
Sbjct: 407 VKRGSIAF---VDKADNAKKAGAIGMVVYNNLSGEIEANVPGMSVPTIKLSLEDGEKLVS 463
Query: 476 YISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSP 535
+ + LG + VA FSS+GP ++ ++KPD++APG+NI++
Sbjct: 464 ALKAGETKTTFKLTVSKALGEQ----VADFSSRGP-VMDTWMIKPDISAPGVNIVSTIPT 518
Query: 536 AVGKMQFNILS--GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPIT 593
+ S GTSMA PH+ G +IK P WS IK+AIM TA L + +
Sbjct: 519 HDPDHPYGYGSKQGTSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVTLKDSDGEVY 578
Query: 594 VDPKGRRGNAFDYGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDNSK 653
P +G + ++SPG Y FL G + K+ + S
Sbjct: 579 --PHNAQGAGSARIMNAIKADSLVSPG------SYSYGTFLKENGNETKNETFTIENQSS 630
Query: 654 CSQKLPAPYDLNYPSIT 670
+ Y N I+
Sbjct: 631 IRKSYTLEYSFNGSGIS 647
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Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 104/401 (25%), Positives = 173/401 (43%), Gaps = 66/401 (16%)
Query: 225 HGSHTASTAAGRYVANMN--YRGLAAGGARGGAPMARIAVYKTCWDSGCYDV--DLLAAF 280
HG+H + +G + YR G P A++ + + +G D + A
Sbjct: 195 HGTHVSGILSGNAPSETKEPYR------LEGAMPEAQLLLMRVEIVNGLADYARNYAQAI 248
Query: 281 DDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSVTNL- 339
DA+ G ++++S G A D +A S+G+ +V SAGN+ + G T L
Sbjct: 249 RDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLP 308
Query: 340 ---------------APWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARII 384
A T+A+ S D+ T E A+ + + + N R
Sbjct: 309 LADHPDYGVVGTPAAADSTLTVASYSPDKQLT-ETATVKTADQQDKEMPVLSTN---RF- 363
Query: 385 SASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGM 444
E Y Y + E K GK+ + + + K+ + K+AG VG+
Sbjct: 364 ---EPNKAYDYAYANRGTKEDDFKDVK--GKIALIERGDIDFKDKIANA---KKAGAVGV 415
Query: 445 ILVDEPGKD--VAIPFV--IPSAVVGKKTG--NKILSYISHTSKAISKIFPAKTVLGSEP 498
++ D K + +P V +P+A + +K G K S + T A K+ P T G+
Sbjct: 416 LIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNSKKTITFNATPKVLP--TASGT-- 471
Query: 499 APRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGI 558
+++ FSS G A +KPD+ APG +I++ +V ++ LSGTSM+ P V GI
Sbjct: 472 --KLSRFSSWGLTADGN--IKPDIAAPGQDILS----SVANNKYAKLSGTSMSAPLVAGI 523
Query: 559 ATLIK----AVHPSWSPSA----IKSAIMTTATAL-DKNHK 590
L++ +P +PS K +M++ATAL D++ K
Sbjct: 524 MGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEK 564
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD34|C5AP_STRP3 C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 104/401 (25%), Positives = 173/401 (43%), Gaps = 66/401 (16%)
Query: 225 HGSHTASTAAGRYVANMN--YRGLAAGGARGGAPMARIAVYKTCWDSGCYDV--DLLAAF 280
HG+H + +G + YR G P A++ + + +G D + A
Sbjct: 195 HGTHVSGILSGNAPSETKEPYR------LEGAMPEAQLLLMRVEIVNGLADYARNYAQAI 248
Query: 281 DDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSVTNL- 339
DA+ G ++++S G A D +A S+G+ +V SAGN+ + G T L
Sbjct: 249 RDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLP 308
Query: 340 ---------------APWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARII 384
A T+A+ S D+ T E A+ + + + N R
Sbjct: 309 LADHPDYGVVGTPAAADSTLTVASYSPDKQLT-ETATVKTADQQDKEMPVLSTN---RF- 363
Query: 385 SASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGM 444
E Y Y + E K GK+ + + + K+ + K+AG VG+
Sbjct: 364 ---EPNKAYDYAYANRGTKEDDFKDVK--GKIALIERGDIDFKDKIANA---KKAGAVGV 415
Query: 445 ILVDEPGKD--VAIPFV--IPSAVVGKKTG--NKILSYISHTSKAISKIFPAKTVLGSEP 498
++ D K + +P V +P+A + +K G K S + T A K+ P T G+
Sbjct: 416 LIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNSKKTITFNATPKVLP--TASGT-- 471
Query: 499 APRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGI 558
+++ FSS G A +KPD+ APG +I++ +V ++ LSGTSM+ P V GI
Sbjct: 472 --KLSRFSSWGLTADGN--IKPDIAAPGQDILS----SVANNKYAKLSGTSMSAPLVAGI 523
Query: 559 ATLIK----AVHPSWSPSA----IKSAIMTTATAL-DKNHK 590
L++ +P +PS K +M++ATAL D++ K
Sbjct: 524 MGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEK 564
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (taxid: 301448) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 103/400 (25%), Positives = 172/400 (43%), Gaps = 64/400 (16%)
Query: 225 HGSHTASTAAGRYVANMN--YRGLAAGGARGGAPMARIAVYKTCWDSGCYDV--DLLAAF 280
HG+H + +G + YR G P A++ + + +G D + A
Sbjct: 193 HGTHVSGILSGNAPSETKEPYR------LEGAMPEAQLLLMRVEIVNGLADYARNYAQAI 246
Query: 281 DDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSVTNL- 339
DA+ G ++++S G A D +A S+G+ +V SAGN+ + G T L
Sbjct: 247 RDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLP 306
Query: 340 ---------------APWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARII 384
A T+A+ S D+ T E A+ + + + N R
Sbjct: 307 LADHPDYGVVGTPAAADSTLTVASYSPDKQLT-ETATVKTADQQDKEMPVLSTN---RF- 361
Query: 385 SASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGM 444
E Y Y + E K GK+ + + + K+ + K+AG VG+
Sbjct: 362 ---EPNKAYDYAYANRGMKEDDFKDVK--GKIALIERGDIDFKDKIANA---KKAGAVGV 413
Query: 445 ILVDEPGKD--VAIPFV--IPSAVVGKKTGNKILSYISHTSKAISKIFPAK-TVLGSEPA 499
++ D K + +P V +P+A + +K G L + K I+ F A VL +
Sbjct: 414 LIYDNQDKGFPIELPNVDQMPAAFISRKDG---LLLKENPQKTIT--FNATPKVLPTASG 468
Query: 500 PRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIA 559
+++ FSS G A +KPD+ APG +I++ +V ++ LSGTSM+ P V GI
Sbjct: 469 TKLSRFSSWGLTADG--NIKPDIAAPGQDILS----SVANNKYAKLSGTSMSAPLVAGIM 522
Query: 560 TLIK----AVHPSWSPSA----IKSAIMTTATAL-DKNHK 590
L++ +P +PS K +M++ATAL D++ K
Sbjct: 523 GLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEK 562
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q8NZ80|C5AP_STRP8 C5a peptidase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 103/400 (25%), Positives = 172/400 (43%), Gaps = 64/400 (16%)
Query: 225 HGSHTASTAAGRYVANMN--YRGLAAGGARGGAPMARIAVYKTCWDSGCYDV--DLLAAF 280
HG+H + +G + YR G P A++ + + +G D + A
Sbjct: 193 HGTHVSGILSGNAPSETKEPYR------LEGAMPEAQLLLMRVEIVNGLADYARNYAQAI 246
Query: 281 DDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSVTNL- 339
DA+ G ++++S G A D +A S+G+ +V SAGN+ + G T L
Sbjct: 247 RDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLP 306
Query: 340 ---------------APWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARII 384
A T+A+ S D+ T E A+ + + + N R
Sbjct: 307 LADHPDYGVVGTPAAADSTLTVASYSPDKQLT-ETATVKTADQQDKEMPVLSTN---RF- 361
Query: 385 SASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGM 444
E Y Y + E K GK+ + + + K+ + K+AG VG+
Sbjct: 362 ---EPNKAYDYAYANRGMKEDDFKDVK--GKIALIERGDIDFKDKIANA---KKAGAVGV 413
Query: 445 ILVDEPGKD--VAIPFV--IPSAVVGKKTGNKILSYISHTSKAISKIFPAK-TVLGSEPA 499
++ D K + +P V +P+A + +K G L + K I+ F A VL +
Sbjct: 414 LIYDNQDKGFPIELPNVDQMPAAFISRKDG---LLLKENPQKTIT--FNATPKVLPTASG 468
Query: 500 PRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIA 559
+++ FSS G A +KPD+ APG +I++ +V ++ LSGTSM+ P V GI
Sbjct: 469 TKLSRFSSWGLTADGN--IKPDIAAPGQDILS----SVANNKYAKLSGTSMSAPLVAGIM 522
Query: 560 TLIKA----VHPSWSPSA----IKSAIMTTATAL-DKNHK 590
L++ +P +PS K +M++ATAL D++ K
Sbjct: 523 GLLQKQYEIQYPDMTPSERLDLAKKVLMSSATALYDEDEK 562
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M18 (taxid: 301451) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P58099|C5AP_STRP1 C5a peptidase OS=Streptococcus pyogenes serotype M1 GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 73.6 bits (179), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 103/400 (25%), Positives = 172/400 (43%), Gaps = 64/400 (16%)
Query: 225 HGSHTASTAAGRYVANMN--YRGLAAGGARGGAPMARIAVYKTCWDSGCYDV--DLLAAF 280
HG+H + +G + YR G P A++ + + +G D + A
Sbjct: 193 HGTHVSGILSGNAPSETKEPYR------LEGAMPEAQLLLMRVEIVNGLADYARNYAQAI 246
Query: 281 DDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSVTNL- 339
DA+ G ++++S G A D +A S+G+ +V SAGN+ + G T L
Sbjct: 247 IDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLP 306
Query: 340 ---------------APWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARII 384
A T+A+ S D+ T E A+ + + + N R
Sbjct: 307 LADHPDYGVVGTPAAADSTLTVASYSPDKQLT-ETATVKTADQQDKEMPVLSTN---RF- 361
Query: 385 SASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGM 444
E Y Y + E K GK+ + + + K+ + K+AG VG+
Sbjct: 362 ---EPNKAYDYAYANRGMKEDDFKDVK--GKIALIERGDIDFKDKIANA---KKAGAVGV 413
Query: 445 ILVDEPGKD--VAIPFV--IPSAVVGKKTGNKILSYISHTSKAISKIFPAK-TVLGSEPA 499
++ D K + +P V +P+A + +K G L + K I+ F A VL +
Sbjct: 414 LIYDNQDKGFPIELPNVDQMPAAFISRKDG---LLLKENPQKTIT--FNATPKVLPTASG 468
Query: 500 PRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIA 559
+++ FSS G A +KPD+ APG +I++ +V ++ LSGTSM+ P V GI
Sbjct: 469 TKLSRFSSWGLTADG--NIKPDIAAPGQDILS----SVANNKYAKLSGTSMSAPLVAGIM 522
Query: 560 TLIK----AVHPSWSPSA----IKSAIMTTATAL-DKNHK 590
L++ +P +PS K +M++ATAL D++ K
Sbjct: 523 GLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEK 562
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M1 (taxid: 301447) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 768 | ||||||
| 359476988 | 763 | PREDICTED: subtilisin-like protease-like | 0.986 | 0.993 | 0.784 | 0.0 | |
| 296088493 | 764 | unnamed protein product [Vitis vinifera] | 0.983 | 0.988 | 0.784 | 0.0 | |
| 255575263 | 761 | Cucumisin precursor, putative [Ricinus c | 0.977 | 0.986 | 0.785 | 0.0 | |
| 356531311 | 762 | PREDICTED: subtilisin-like protease-like | 0.976 | 0.984 | 0.759 | 0.0 | |
| 356559208 | 762 | PREDICTED: subtilisin-like protease-like | 0.976 | 0.984 | 0.755 | 0.0 | |
| 224115420 | 726 | predicted protein [Populus trichocarpa] | 0.945 | 1.0 | 0.792 | 0.0 | |
| 224061557 | 746 | predicted protein [Populus trichocarpa] | 0.966 | 0.994 | 0.762 | 0.0 | |
| 357517501 | 755 | Serine protease-like protein [Medicago t | 0.951 | 0.968 | 0.754 | 0.0 | |
| 356495293 | 763 | PREDICTED: subtilisin-like protease-like | 0.984 | 0.990 | 0.740 | 0.0 | |
| 356540894 | 762 | PREDICTED: subtilisin-like protease-like | 0.980 | 0.988 | 0.742 | 0.0 |
| >gi|359476988|ref|XP_002263237.2| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1236 bits (3199), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/758 (78%), Positives = 669/758 (88%)
Query: 11 IHRSYCYIFYLLVGVFLAENNICFSAKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSM 70
+H I +L VGVF+A+ I SAKVYVVYMG+ T +DP ++ RQ+HQML VH GS
Sbjct: 6 LHYRSSRILHLFVGVFVAQLTISLSAKVYVVYMGSRTSDDPDEILRQNHQMLTAVHKGST 65
Query: 71 EQAQASHVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKRRLHTTHSWDFMGLMG 130
E+AQASHVYSY+HGF+GFAAKLT+QQAS++A MPGVVSVFPN+KRRLHTTHSWDFMGL+G
Sbjct: 66 ERAQASHVYSYRHGFKGFAAKLTEQQASEMANMPGVVSVFPNLKRRLHTTHSWDFMGLVG 125
Query: 131 EESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSC 190
EE+MEIPG+STKNQ N+I+GFIDTGIWPESPSFSD MP PA W GQC+SGEAFNASSC
Sbjct: 126 EETMEIPGYSTKNQENVIIGFIDTGIWPESPSFSDDNMPSIPAGWNGQCQSGEAFNASSC 185
Query: 191 NRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGG 250
NRKVIGARYY+SGYEAEED++ +VSF+SPRDSSGHGSHTASTAAGR+V NMNY+GLAAGG
Sbjct: 186 NRKVIGARYYLSGYEAEEDLITSVSFKSPRDSSGHGSHTASTAAGRHVTNMNYKGLAAGG 245
Query: 251 ARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAIS 310
ARGGAPMARIAVYKTCW SGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYF+DAIS
Sbjct: 246 ARGGAPMARIAVYKTCWASGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFNDAIS 305
Query: 311 IGSFHATSRGILVVASAGNEGNEGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGE 370
+GSFHA S G++VVAS GNEG++GS TNLAPWM T+AASSTDRDFTS+IVLGDGANFTGE
Sbjct: 306 LGSFHAASHGVVVVASVGNEGSQGSATNLAPWMITVAASSTDRDFTSDIVLGDGANFTGE 365
Query: 371 SLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKL 430
SLSL +MNAS IISASEAYAGYFTPYQSSYCLESSLN+TK RGK+LVC+HAESST+SKL
Sbjct: 366 SLSLFEMNASTSIISASEAYAGYFTPYQSSYCLESSLNNTKTRGKILVCQHAESSTDSKL 425
Query: 431 RKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPA 490
KS VV+EAGGVGMIL+DE KDVAIPFVIP+A+VG+ TG +ILSYI+HT K +S+IFPA
Sbjct: 426 AKSAVVREAGGVGMILIDEADKDVAIPFVIPAAIVGRGTGGRILSYINHTRKPVSRIFPA 485
Query: 491 KTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSM 550
KTVLGS PAPRVAAFSSKGPNALNPEILKPDV+APGLNI+AAWSPA+ KM FNILSGTSM
Sbjct: 486 KTVLGSHPAPRVAAFSSKGPNALNPEILKPDVSAPGLNILAAWSPAIEKMHFNILSGTSM 545
Query: 551 ACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGF 610
ACPHVTGI L+KAVHPSWSPSAIKSAIMTTAT LDKN + ITVDP+GR+GNAFDYGSGF
Sbjct: 546 ACPHVTGIVALVKAVHPSWSPSAIKSAIMTTATILDKNRRSITVDPEGRKGNAFDYGSGF 605
Query: 611 LNPRKVLSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDNSKCSQKLPAPYDLNYPSIT 670
+NP +VL PGLIYD +P DY FLCSIGY EK LHL+TRDNS C Q LNYPSIT
Sbjct: 606 VNPTRVLDPGLIYDTEPTDYKAFLCSIGYSEKLLHLITRDNSTCDQTFATASALNYPSIT 665
Query: 671 VPNLKGNFSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKL 730
VPNLK N SV+R+VTNVGKPRSIYKAVVS+P G+ VTV P RLIF+ YGQKINFTVH K+
Sbjct: 666 VPNLKDNSSVSRTVTNVGKPRSIYKAVVSAPTGINVTVVPHRLIFSHYGQKINFTVHLKV 725
Query: 731 TSPPKGYGFGYLSWKNGKLRVTSPLVVQVAPSDMGLMR 768
+P Y FG+LSW+N RVTSPLVV+VAP+ +GLMR
Sbjct: 726 AAPSHSYVFGFLSWRNKYTRVTSPLVVRVAPTSLGLMR 763
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088493|emb|CBI37484.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1230 bits (3182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/755 (78%), Positives = 666/755 (88%)
Query: 11 IHRSYCYIFYLLVGVFLAENNICFSAKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSM 70
+H I +L VGVF+A+ I SAKVYVVYMG+ T +DP ++ RQ+HQML VH GS
Sbjct: 4 LHYRSSRILHLFVGVFVAQLTISLSAKVYVVYMGSRTSDDPDEILRQNHQMLTAVHKGST 63
Query: 71 EQAQASHVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKRRLHTTHSWDFMGLMG 130
E+AQASHVYSY+HGF+GFAAKLT+QQAS++A MPGVVSVFPN+KRRLHTTHSWDFMGL+G
Sbjct: 64 ERAQASHVYSYRHGFKGFAAKLTEQQASEMANMPGVVSVFPNLKRRLHTTHSWDFMGLVG 123
Query: 131 EESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSC 190
EE+MEIPG+STKNQ N+I+GFIDTGIWPESPSFSD MP PA W GQC+SGEAFNASSC
Sbjct: 124 EETMEIPGYSTKNQENVIIGFIDTGIWPESPSFSDDNMPSIPAGWNGQCQSGEAFNASSC 183
Query: 191 NRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGG 250
NRKVIGARYY+SGYEAEED++ +VSF+SPRDSSGHGSHTASTAAGR+V NMNY+GLAAGG
Sbjct: 184 NRKVIGARYYLSGYEAEEDLITSVSFKSPRDSSGHGSHTASTAAGRHVTNMNYKGLAAGG 243
Query: 251 ARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAIS 310
ARGGAPMARIAVYKTCW SGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYF+DAIS
Sbjct: 244 ARGGAPMARIAVYKTCWASGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFNDAIS 303
Query: 311 IGSFHATSRGILVVASAGNEGNEGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGE 370
+GSFHA S G++VVAS GNEG++GS TNLAPWM T+AASSTDRDFTS+IVLGDGANFTGE
Sbjct: 304 LGSFHAASHGVVVVASVGNEGSQGSATNLAPWMITVAASSTDRDFTSDIVLGDGANFTGE 363
Query: 371 SLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKL 430
SLSL +MNAS IISASEAYAGYFTPYQSSYCLESSLN+TK RGK+LVC+HAESST+SKL
Sbjct: 364 SLSLFEMNASTSIISASEAYAGYFTPYQSSYCLESSLNNTKTRGKILVCQHAESSTDSKL 423
Query: 431 RKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPA 490
KS VV+EAGGVGMIL+DE KDVAIPFVIP+A+VG+ TG +ILSYI+HT K +S+IFPA
Sbjct: 424 AKSAVVREAGGVGMILIDEADKDVAIPFVIPAAIVGRGTGGRILSYINHTRKPVSRIFPA 483
Query: 491 KTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSM 550
KTVLGS PAPRVAAFSSKGPNALNPEILKPDV+APGLNI+AAWSPA+ KM FNILSGTSM
Sbjct: 484 KTVLGSHPAPRVAAFSSKGPNALNPEILKPDVSAPGLNILAAWSPAIEKMHFNILSGTSM 543
Query: 551 ACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGF 610
ACPHVTGI L+KAVHPSWSPSAIKSAIMTTAT LDKN + ITVDP+GR+GNAFDYGSGF
Sbjct: 544 ACPHVTGIVALVKAVHPSWSPSAIKSAIMTTATILDKNRRSITVDPEGRKGNAFDYGSGF 603
Query: 611 LNPRKVLSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDNSKCSQKLPAPYDLNYPSIT 670
+NP +VL PGLIYD +P DY FLCSIGY EK LHL+TRDNS C Q LNYPSIT
Sbjct: 604 VNPTRVLDPGLIYDTEPTDYKAFLCSIGYSEKLLHLITRDNSTCDQTFATASALNYPSIT 663
Query: 671 VPNLKGNFSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKL 730
VPNLK N SV+R+VTNVGKPRSIYKAVVS+P G+ VTV P RLIF+ YGQKINFTVH K+
Sbjct: 664 VPNLKDNSSVSRTVTNVGKPRSIYKAVVSAPTGINVTVVPHRLIFSHYGQKINFTVHLKV 723
Query: 731 TSPPKGYGFGYLSWKNGKLRVTSPLVVQVAPSDMG 765
+P Y FG+LSW+N RVTSPLVV+VAP+ +G
Sbjct: 724 AAPSHSYVFGFLSWRNKYTRVTSPLVVRVAPTSLG 758
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255575263|ref|XP_002528535.1| Cucumisin precursor, putative [Ricinus communis] gi|223532037|gb|EEF33847.1| Cucumisin precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1216 bits (3146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/752 (78%), Positives = 666/752 (88%), Gaps = 1/752 (0%)
Query: 18 IFYLLVGVFLAENNICFSAKVYVVYMGTT-TGEDPLDVWRQHHQMLAVVHAGSMEQAQAS 76
IF LL+ + E C+S+K YVVYMG+ T E P D+ Q+HQ+LA VH GS+EQA+ S
Sbjct: 10 IFNLLLALLSGEIGFCYSSKAYVVYMGSKGTEEHPDDILSQNHQILASVHGGSIEQARTS 69
Query: 77 HVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEESMEI 136
H+YSY HGF+GFAAKLTD QASQIA+MPGVVSVFPN+KR+LHTTHSWDFMGL+GEE+MEI
Sbjct: 70 HLYSYSHGFKGFAAKLTDHQASQIAKMPGVVSVFPNLKRKLHTTHSWDFMGLVGEETMEI 129
Query: 137 PGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIG 196
PG+STKNQVNII+GFIDTGIWPESPSFSD MPP P +WKGQC+SGEAFN+SSCNRKVIG
Sbjct: 130 PGYSTKNQVNIIIGFIDTGIWPESPSFSDDDMPPVPPRWKGQCQSGEAFNSSSCNRKVIG 189
Query: 197 ARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAP 256
ARYY SGYEAEED +SF SPRDSSGHG+HTASTAAGRYVA+MNY+GLAAGGARGGAP
Sbjct: 190 ARYYRSGYEAEEDSANLMSFISPRDSSGHGTHTASTAAGRYVASMNYKGLAAGGARGGAP 249
Query: 257 MARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHA 316
MAR+AVYKTCWDSGCYD+DLLAAFDDAIRDGVHILSLSLGP+APQGDYF+DAISIGSFHA
Sbjct: 250 MARVAVYKTCWDSGCYDIDLLAAFDDAIRDGVHILSLSLGPDAPQGDYFNDAISIGSFHA 309
Query: 317 TSRGILVVASAGNEGNEGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCK 376
SRGILVVASAGNEG++GS TNLAPWM T+AASSTDRD S+I+LG+ A F+GESLSL +
Sbjct: 310 ASRGILVVASAGNEGSQGSATNLAPWMITVAASSTDRDLASDIILGNAAKFSGESLSLFE 369
Query: 377 MNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVV 436
MNA+ARIISAS+AYAGYFTPYQSS+CLESSLN TKARGKVLVCRHAESST+SKL KS +V
Sbjct: 370 MNATARIISASQAYAGYFTPYQSSFCLESSLNKTKARGKVLVCRHAESSTDSKLAKSSIV 429
Query: 437 KEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGS 496
KEAGGVGM+L+DE +DVAIPF+IPSA+VGK G KILSYI +T K ++KI AKT+LGS
Sbjct: 430 KEAGGVGMVLIDETDQDVAIPFIIPSAIVGKDIGKKILSYIINTRKPVAKISRAKTILGS 489
Query: 497 EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVT 556
+PAPR+AAFSSKGPNAL PEILKPDVTAPGLNI+AAWSPAVGKMQFNILSGTSMACPHVT
Sbjct: 490 QPAPRIAAFSSKGPNALTPEILKPDVTAPGLNILAAWSPAVGKMQFNILSGTSMACPHVT 549
Query: 557 GIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKV 616
GIA LIKAV+PSWSPSAIKSAIMTTAT LDKN KPITVDP+GRRGNAFDYGSGF+NP +V
Sbjct: 550 GIAALIKAVNPSWSPSAIKSAIMTTATILDKNRKPITVDPRGRRGNAFDYGSGFVNPTRV 609
Query: 617 LSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDNSKCSQKLPAPYDLNYPSITVPNLKG 676
L PGLIYDA DY FLCSIGYD+KSLHLVTRDNS C+Q LNYPSIT+PNLK
Sbjct: 610 LDPGLIYDAYTTDYKSFLCSIGYDDKSLHLVTRDNSTCNQTFATASSLNYPSITIPNLKD 669
Query: 677 NFSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLTSPPKG 736
FSVTR VTNVGKPRSI+KAVVS+P+G+ VTV P+RL+F+SYGQKI FTV+FK+T+P KG
Sbjct: 670 YFSVTRIVTNVGKPRSIFKAVVSNPIGINVTVVPKRLVFDSYGQKITFTVNFKVTAPSKG 729
Query: 737 YGFGYLSWKNGKLRVTSPLVVQVAPSDMGLMR 768
Y FG LSW+N VTSPLVV+VA S MGLM+
Sbjct: 730 YAFGILSWRNRNTWVTSPLVVRVASSSMGLMK 761
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531311|ref|XP_003534221.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1201 bits (3108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/752 (75%), Positives = 649/752 (86%), Gaps = 2/752 (0%)
Query: 18 IFYLLVGVFLAENNICFSAKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASH 77
+F+L + VF A+ + CFS KVYVVYMG+ +GE P D+ +++HQ+LA VH+GS+E+AQASH
Sbjct: 12 LFFLFLAVFAAKVSFCFSTKVYVVYMGSKSGEHPDDILKENHQILASVHSGSIEEAQASH 71
Query: 78 VYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEESMEIP 137
+Y+YKHGFRGFAAKL+D+QASQI++MPGVVSVFPN KR+LHTTHSWDFMGL+ +++ME
Sbjct: 72 IYTYKHGFRGFAAKLSDEQASQISKMPGVVSVFPNSKRKLHTTHSWDFMGLLDDQTMETL 131
Query: 138 GFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGA 197
G+S +NQ NII+GFIDTGIWPESPSFSD MP P WKGQC+SGE FNASSCNRKVIGA
Sbjct: 132 GYSIRNQENIIIGFIDTGIWPESPSFSDTDMPAVPPGWKGQCQSGEGFNASSCNRKVIGA 191
Query: 198 RYYMSGYEAEE-DIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAP 256
RYY SGYEA E D SF S RDS+GHGSHTAS AAGR+VANMNY+GLA+GGARGGAP
Sbjct: 192 RYYRSGYEAAEGDSDAKKSFISARDSTGHGSHTASIAAGRFVANMNYKGLASGGARGGAP 251
Query: 257 MARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHA 316
MARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLG E+PQGDYFSDAIS+GSFHA
Sbjct: 252 MARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGAESPQGDYFSDAISVGSFHA 311
Query: 317 TSRGILVVASAGNEGNEGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCK 376
SRG+LVVASAGNEG+ GS TNLAPWM T+AASSTDRDFTS+I+LG+GA GESLSL +
Sbjct: 312 ASRGVLVVASAGNEGSAGSATNLAPWMLTVAASSTDRDFTSDIILGNGAKIMGESLSLFE 371
Query: 377 MNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVV 436
MNAS RIISAS A GYFTPYQSSYCLESSLN TK++GKVLVCRHAESSTESK+ KS +V
Sbjct: 372 MNASTRIISASAANGGYFTPYQSSYCLESSLNKTKSKGKVLVCRHAESSTESKVLKSKIV 431
Query: 437 KEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGS 496
K AGGVGMIL+DE +DVAIPFVIPSA+VG K G KILSY+ T K +S+IF AKTVLG+
Sbjct: 432 KAAGGVGMILIDETDQDVAIPFVIPSAIVGNKIGEKILSYLRTTRKPVSRIFGAKTVLGA 491
Query: 497 EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVT 556
PAPRVAAFSSKGPNALNPEILKPDVTAPGLNI+AAWSPA G M FNILSGTSMACPHVT
Sbjct: 492 HPAPRVAAFSSKGPNALNPEILKPDVTAPGLNILAAWSPAAGNM-FNILSGTSMACPHVT 550
Query: 557 GIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKV 616
GIATL+KAVHPSWSPSAIKSAIMTTAT LDK+H+PIT DP+ RR NAFDYGSGF+NP +V
Sbjct: 551 GIATLVKAVHPSWSPSAIKSAIMTTATVLDKHHRPITADPEQRRANAFDYGSGFVNPARV 610
Query: 617 LSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDNSKCSQKLPAPYDLNYPSITVPNLKG 676
L PGLIYD++P D+ FLCS+GYD++SLH VTRDNS C + DLNYPSI VPNLK
Sbjct: 611 LDPGLIYDSKPADFVAFLCSLGYDQRSLHQVTRDNSTCDRAFSTASDLNYPSIAVPNLKD 670
Query: 677 NFSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLTSPPKG 736
NFSVTR VTNVGK RS+YKAVVSSP GV V+V P RLIF GQKINFTV+FKL++P KG
Sbjct: 671 NFSVTRIVTNVGKARSVYKAVVSSPPGVRVSVIPNRLIFTRIGQKINFTVNFKLSAPSKG 730
Query: 737 YGFGYLSWKNGKLRVTSPLVVQVAPSDMGLMR 768
Y FG+LSW+N +VTSPLVV+VAP GL+R
Sbjct: 731 YAFGFLSWRNRISQVTSPLVVRVAPGKNGLVR 762
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559208|ref|XP_003547892.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1193 bits (3087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/752 (75%), Positives = 648/752 (86%), Gaps = 2/752 (0%)
Query: 18 IFYLLVGVFLAENNICFSAKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASH 77
+F+L + V A+ + CFS KVYVVYMG+ +GE P D+ +++HQ+LA VH+GS+EQAQASH
Sbjct: 12 LFFLFLTVLAAKVSFCFSTKVYVVYMGSKSGEHPDDILKENHQILASVHSGSIEQAQASH 71
Query: 78 VYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEESMEIP 137
+Y+Y+HGFRGFAAKL+D+QASQI++MPGVVSVFPN KR+LHTTHSWDFMGL+ +++ME
Sbjct: 72 IYTYRHGFRGFAAKLSDEQASQISKMPGVVSVFPNSKRKLHTTHSWDFMGLLDDQTMETL 131
Query: 138 GFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGA 197
G+S +NQ NII+GFIDTGIWPESPSFSD MP P WKGQC+SGE FN+SSCNRKVIGA
Sbjct: 132 GYSIRNQENIIIGFIDTGIWPESPSFSDTDMPAVPPGWKGQCQSGEGFNSSSCNRKVIGA 191
Query: 198 RYYMSGYEAEE-DIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAP 256
RYY SGYEA E D SFRS RDS+GHGSHTAS AAGR+VANMNY+GLA+GGARGGAP
Sbjct: 192 RYYRSGYEAAEGDSDAKKSFRSARDSTGHGSHTASIAAGRFVANMNYKGLASGGARGGAP 251
Query: 257 MARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHA 316
MARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLG E+PQGDYFSDAIS+GSFHA
Sbjct: 252 MARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGAESPQGDYFSDAISVGSFHA 311
Query: 317 TSRGILVVASAGNEGNEGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCK 376
SRG+LVVASAGNEG+ GS TNLAPWM T+AASSTDRDFTS+I+LG+GA GESLSL +
Sbjct: 312 VSRGVLVVASAGNEGSAGSATNLAPWMLTVAASSTDRDFTSDIMLGNGAKIMGESLSLFE 371
Query: 377 MNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVV 436
MNAS RIISAS A GYFTPYQSSYCLESSLN TK++GKVLVCRHAESSTESK+ KS +V
Sbjct: 372 MNASTRIISASAANGGYFTPYQSSYCLESSLNKTKSKGKVLVCRHAESSTESKVEKSKIV 431
Query: 437 KEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGS 496
K AGGVGMIL+DE +DVAIPFVIPSA+VGKKTG KILSY+ T K S+IF AKTVLG+
Sbjct: 432 KAAGGVGMILIDETDQDVAIPFVIPSAIVGKKTGEKILSYLRTTRKPESRIFGAKTVLGA 491
Query: 497 EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVT 556
PAPRVAAFSSKGPNALNPEILKPDVTAPGLNI+AAWSPA G M FNILSGTSMACPHVT
Sbjct: 492 HPAPRVAAFSSKGPNALNPEILKPDVTAPGLNILAAWSPAAGNM-FNILSGTSMACPHVT 550
Query: 557 GIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKV 616
GIATL+KAVHPSWSPSAIKSAI+TTAT LDK+H+PI DP+ RR NAFDYGSGF+NP +V
Sbjct: 551 GIATLVKAVHPSWSPSAIKSAILTTATILDKHHRPIIADPEQRRANAFDYGSGFVNPARV 610
Query: 617 LSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDNSKCSQKLPAPYDLNYPSITVPNLKG 676
L PGLIYD +P D+ FLCS+GYD +SLH VTRDNS C + DLNYPSI+VPNLK
Sbjct: 611 LDPGLIYDLKPADFVAFLCSLGYDPRSLHQVTRDNSTCDRAFSTASDLNYPSISVPNLKD 670
Query: 677 NFSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLTSPPKG 736
NFSVTR VTNVGK +S+YKAVVS P GV V+V P RLIF+ GQKINFTV+FK+T+P KG
Sbjct: 671 NFSVTRIVTNVGKAKSVYKAVVSPPPGVRVSVIPNRLIFSRIGQKINFTVNFKVTAPSKG 730
Query: 737 YGFGYLSWKNGKLRVTSPLVVQVAPSDMGLMR 768
Y FG LSW+N + +VTSPLVV+VAP GL+R
Sbjct: 731 YAFGLLSWRNRRSQVTSPLVVRVAPGKNGLVR 762
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115420|ref|XP_002317030.1| predicted protein [Populus trichocarpa] gi|222860095|gb|EEE97642.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1181 bits (3054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/726 (79%), Positives = 639/726 (88%)
Query: 43 MGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQIAQ 102
MG+ +G+DP DV Q+H MLA VH GS+EQAQASH+YSY+HGFRGFAAKLTD+QASQIAQ
Sbjct: 1 MGSKSGDDPDDVLSQNHLMLASVHGGSIEQAQASHLYSYRHGFRGFAAKLTDEQASQIAQ 60
Query: 103 MPGVVSVFPNMKRRLHTTHSWDFMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPS 162
MPGVVSVFPN+KR+LHTT SWDFMGL+GEE+MEIPG STKNQVN+I+GFIDTGIWPESPS
Sbjct: 61 MPGVVSVFPNLKRKLHTTRSWDFMGLLGEETMEIPGHSTKNQVNVIIGFIDTGIWPESPS 120
Query: 163 FSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDS 222
FSD MPP PA W+G+CE GEAFNASSCNRKVIGARYYMSGYEAEED VSFRSPRDS
Sbjct: 121 FSDANMPPVPAIWRGECEPGEAFNASSCNRKVIGARYYMSGYEAEEDSARIVSFRSPRDS 180
Query: 223 SGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDD 282
SGHGSHTASTAAGRYV N+NY+GLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDD
Sbjct: 181 SGHGSHTASTAAGRYVTNVNYKGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDD 240
Query: 283 AIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSVTNLAPW 342
AIRDGVH+LS+SLGP+APQGDYF DAISIGSFHA S G+LVVAS GN G+ GS TNLAPW
Sbjct: 241 AIRDGVHLLSVSLGPDAPQGDYFKDAISIGSFHAASHGVLVVASVGNAGDRGSATNLAPW 300
Query: 343 MFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYC 402
M T+ ASS DRDF S+IVLG+ FTGESLSL MNASARIISASEA AGYFTPYQSSYC
Sbjct: 301 MITVGASSMDRDFASDIVLGNDTKFTGESLSLFGMNASARIISASEASAGYFTPYQSSYC 360
Query: 403 LESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPS 462
LESSLNST ARGKVLVCR AE S+ESKL KS VVKEAGGVGM+L+DE KDVAIPFVIPS
Sbjct: 361 LESSLNSTIARGKVLVCRIAEGSSESKLAKSKVVKEAGGVGMVLIDEADKDVAIPFVIPS 420
Query: 463 AVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDV 522
A+VGK+ G +ILSYI++T K +SKI AKTVLGS+PAPR+A+FSSKGPN+L PEILKPD+
Sbjct: 421 AIVGKEIGREILSYINNTRKPMSKISRAKTVLGSQPAPRIASFSSKGPNSLTPEILKPDI 480
Query: 523 TAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTA 582
APGLNI+AAWSP G+MQFNILSGTSM+CPH+TGIATL+KAVHPSWSPSAIKSAIMTTA
Sbjct: 481 AAPGLNILAAWSPVAGRMQFNILSGTSMSCPHITGIATLVKAVHPSWSPSAIKSAIMTTA 540
Query: 583 TALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGYDEK 642
T LDKN +PI VDP+GRR N+FDYGSGF++P +VL PGLIYDA PIDY FLCSIGYDEK
Sbjct: 541 TILDKNDEPIRVDPEGRRANSFDYGSGFVDPSRVLDPGLIYDAHPIDYKAFLCSIGYDEK 600
Query: 643 SLHLVTRDNSKCSQKLPAPYDLNYPSITVPNLKGNFSVTRSVTNVGKPRSIYKAVVSSPV 702
SL LVTRDNS C Q LNYPSITVPNLK +FSVTR+VTNVGKPRS+YKAVVS+PV
Sbjct: 601 SLRLVTRDNSTCDQTFTTASSLNYPSITVPNLKDSFSVTRTVTNVGKPRSVYKAVVSNPV 660
Query: 703 GVTVTVAPERLIFNSYGQKINFTVHFKLTSPPKGYGFGYLSWKNGKLRVTSPLVVQVAPS 762
G+ VTV P++LIFN YGQKI FTV+FK+ +P KGY FG+L+W +G RVTSPLVVQ AP
Sbjct: 661 GINVTVVPKQLIFNRYGQKIKFTVNFKVAAPSKGYAFGFLTWTSGDARVTSPLVVQAAPF 720
Query: 763 DMGLMR 768
GLMR
Sbjct: 721 PKGLMR 726
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061557|ref|XP_002300539.1| predicted protein [Populus trichocarpa] gi|222847797|gb|EEE85344.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1178 bits (3047), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 576/755 (76%), Positives = 654/755 (86%), Gaps = 13/755 (1%)
Query: 14 SYCYIFYLLVGVFLAENNICFSAKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQA 73
S+C +F L + VF+AE C S+KVYVVYMG+ +G+DP DV Q+H MLA VH GS+EQA
Sbjct: 5 SWCSLFCLFLAVFVAEVGFCSSSKVYVVYMGSKSGDDPDDVLSQNHHMLASVHGGSVEQA 64
Query: 74 QASHVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEES 133
QASH+Y+Y+HGF+GFAAKLTD+QASQIA+MPGVVSVFPN KR+LHTTHSWDFMGL+GEE+
Sbjct: 65 QASHLYTYRHGFKGFAAKLTDEQASQIAKMPGVVSVFPNSKRKLHTTHSWDFMGLVGEET 124
Query: 134 MEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRK 193
MEIPG STKNQVN+I+GFIDTGIWPESPSFSD MPP PA+W+G+C+ GEAFNASSCNRK
Sbjct: 125 MEIPGHSTKNQVNVIIGFIDTGIWPESPSFSDADMPPVPARWRGKCQLGEAFNASSCNRK 184
Query: 194 VIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARG 253
VIGARYY SGYEAEED +SFRSPRDSSGHGSHTAS AAGRYV NMNY+GLAAGGARG
Sbjct: 185 VIGARYYKSGYEAEEDSSRIMSFRSPRDSSGHGSHTASIAAGRYVTNMNYKGLAAGGARG 244
Query: 254 GAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGS 313
GAPMARIAVYKTCW+SGCYDVDLLAAFDDAIRDGVHILS+SLGP+APQGDYF+DAISIGS
Sbjct: 245 GAPMARIAVYKTCWESGCYDVDLLAAFDDAIRDGVHILSVSLGPDAPQGDYFNDAISIGS 304
Query: 314 FHATSRGILVVASAGNEGNEGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLS 373
FHA SRG+LVVASAGN G GS TNLAPWM T+ A +L + GESLS
Sbjct: 305 FHAASRGVLVVASAGNAGTRGSATNLAPWMITVGA-----------ILN--SEKQGESLS 351
Query: 374 LCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKS 433
L +M ASARIISASEA+AGYFTPYQSSYCLESSLN TKARGKVLVCRHAESS+ESK+ KS
Sbjct: 352 LFEMKASARIISASEAFAGYFTPYQSSYCLESSLNGTKARGKVLVCRHAESSSESKIAKS 411
Query: 434 MVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTV 493
VVKEAGGVGM+L+DE KDVAIPF IPSAVVG++ G +ILSYI++T K +S+I AKTV
Sbjct: 412 QVVKEAGGVGMVLIDEADKDVAIPFPIPSAVVGREMGREILSYINNTRKPMSRISRAKTV 471
Query: 494 LGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACP 553
LGS+PAPR+A+FSSKGPN+L PEILKPDV APGLNI+AAWSPA GKMQFNILSGTSM+CP
Sbjct: 472 LGSQPAPRIASFSSKGPNSLTPEILKPDVAAPGLNILAAWSPAAGKMQFNILSGTSMSCP 531
Query: 554 HVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNP 613
H+TG+ATLIKAVHPSWSPSAIKSAIMTTAT LDK+ KPI VDP+GR NAFDYGSGF++P
Sbjct: 532 HITGVATLIKAVHPSWSPSAIKSAIMTTATILDKSGKPIRVDPEGRMANAFDYGSGFVDP 591
Query: 614 RKVLSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDNSKCSQKLPAPYDLNYPSITVPN 673
+VL PGL+YDA PIDY FLCSIGYDEKSLHLVTRDNS C+Q LNYPSITVPN
Sbjct: 592 TRVLDPGLVYDAHPIDYKAFLCSIGYDEKSLHLVTRDNSTCNQTFTTASSLNYPSITVPN 651
Query: 674 LKGNFSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLTSP 733
LK +FSVTR+VTNVGK RS+YKAVVS+P G+ VTV P++LIFNSYGQKI FTV+FK+ +P
Sbjct: 652 LKDSFSVTRTVTNVGKARSVYKAVVSNPAGINVTVVPKQLIFNSYGQKIKFTVNFKVAAP 711
Query: 734 PKGYGFGYLSWKNGKLRVTSPLVVQVAPSDMGLMR 768
KGY FG+L+W++ RVTSPLVV+ APS MGLMR
Sbjct: 712 SKGYAFGFLTWRSTDARVTSPLVVRAAPSPMGLMR 746
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357517501|ref|XP_003629039.1| Serine protease-like protein [Medicago truncatula] gi|355523061|gb|AET03515.1| Serine protease-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1175 bits (3039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/732 (75%), Positives = 634/732 (86%), Gaps = 1/732 (0%)
Query: 28 AENNICFSAKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRG 87
A+ + CFS KVYVVYMG+ + E P D+ +++HQ+LA VH+GS+E+AQASH+YSY+HGFRG
Sbjct: 24 AKVSFCFSTKVYVVYMGSKSLEYPDDILKENHQILASVHSGSIEEAQASHIYSYRHGFRG 83
Query: 88 FAAKLTDQQASQIAQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEESMEIPGFSTKNQVNI 147
FAAKLTD+QAS+I++M GVVSVFPN KR+LHTTHSWDFMGL+ +++ME G+S KNQ NI
Sbjct: 84 FAAKLTDEQASKISKMEGVVSVFPNSKRKLHTTHSWDFMGLLDDQTMETLGYSVKNQENI 143
Query: 148 IVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAE 207
I+GFIDTGIWPESPSFSD MP P WKG C+SGEAFNAS+CNRKVIGARYY SGYEAE
Sbjct: 144 IIGFIDTGIWPESPSFSDTDMPAVPQGWKGHCQSGEAFNASTCNRKVIGARYYKSGYEAE 203
Query: 208 EDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCW 267
E+ +SFRS RDS+GHGSHTAS AAGRYV NMNY+GLA+GGARGGAPMARIAVYKTCW
Sbjct: 204 EESNAKISFRSARDSTGHGSHTASIAAGRYVQNMNYKGLASGGARGGAPMARIAVYKTCW 263
Query: 268 DSGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASA 327
DSGCYDVDLLAAFDDAIRDGVHILSLSLG ++PQGDYF+DAISIGSFHA +RG+LVV+SA
Sbjct: 264 DSGCYDVDLLAAFDDAIRDGVHILSLSLGAQSPQGDYFNDAISIGSFHAANRGVLVVSSA 323
Query: 328 GNEGNEGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIISAS 387
GNEGN GS TNLAPWM T+AA STDRDFTS+I+LG+GA TGESLSL +MNAS RIISAS
Sbjct: 324 GNEGNLGSATNLAPWMLTVAAGSTDRDFTSDIILGNGAKITGESLSLFEMNASTRIISAS 383
Query: 388 EAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILV 447
EA+AGYFTPYQSSYCLESSLN TK +GKVLVCRH E STESK+ KS +VKEAGGVGMIL+
Sbjct: 384 EAFAGYFTPYQSSYCLESSLNKTKTKGKVLVCRHVERSTESKVAKSKIVKEAGGVGMILI 443
Query: 448 DEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSS 507
DE +DVAIPFVIPSA+VGKK G KILSY+ T K +SKI AKTV+G++ APRVAAFSS
Sbjct: 444 DETDQDVAIPFVIPSAIVGKKKGQKILSYLKTTRKPMSKILRAKTVIGAQSAPRVAAFSS 503
Query: 508 KGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHP 567
+GPNALNPEILKPD+TAPGLNI+AAWSP G M FNILSGTSMACPHVTGIATL+KAVHP
Sbjct: 504 RGPNALNPEILKPDITAPGLNILAAWSPVAGNM-FNILSGTSMACPHVTGIATLVKAVHP 562
Query: 568 SWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLSPGLIYDAQP 627
SWSPSAIKSAIMTTAT LDK HKPI+VDP+ +R NAFDYGSGFLNP +VL PGLIYD++P
Sbjct: 563 SWSPSAIKSAIMTTATILDKRHKPISVDPEQKRANAFDYGSGFLNPARVLDPGLIYDSEP 622
Query: 628 IDYTVFLCSIGYDEKSLHLVTRDNSKCSQKLPAPYDLNYPSITVPNLKGNFSVTRSVTNV 687
D+ FLCS+GYD++SLHLVTRDNS C K+ +LNYPSI+VPNLK NFSVTR VTNV
Sbjct: 623 TDFITFLCSLGYDQRSLHLVTRDNSTCKSKITTASNLNYPSISVPNLKDNFSVTRVVTNV 682
Query: 688 GKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLTSPPKGYGFGYLSWKNG 747
GK IY ++VS+P GV VTV P RL F GQKI F+V+FK+TS KGY FG+LSW N
Sbjct: 683 GKATIIYNSIVSAPPGVNVTVVPNRLAFTRIGQKIKFSVNFKVTSSSKGYKFGFLSWTNR 742
Query: 748 KLRVTSPLVVQV 759
+L+VTSPLVV+V
Sbjct: 743 RLQVTSPLVVKV 754
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356495293|ref|XP_003516513.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1164 bits (3011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/756 (74%), Positives = 636/756 (84%)
Query: 13 RSYCYIFYLLVGVFLAENNICFSAKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQ 72
RS FYL + V +A + CFSAKVYVVYMG+ TGE+P D+ + +HQMLA VH+GS+EQ
Sbjct: 8 RSTSTFFYLFLAVLVANTSFCFSAKVYVVYMGSKTGENPDDILKHNHQMLAAVHSGSIEQ 67
Query: 73 AQASHVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEE 132
AQASHVYSYKH FRGFAAKLT++QA QI++MPGVVSVFPN KR+LHTTHSWDF+GL+ E
Sbjct: 68 AQASHVYSYKHAFRGFAAKLTNEQAYQISKMPGVVSVFPNSKRKLHTTHSWDFIGLLDNE 127
Query: 133 SMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNR 192
SMEI G STKNQ NII+GFIDTGIWPESPSFSD MPP P WKG C+ GEAFNASSCNR
Sbjct: 128 SMEIHGHSTKNQENIIIGFIDTGIWPESPSFSDTDMPPVPRGWKGHCQLGEAFNASSCNR 187
Query: 193 KVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGAR 252
KVIGARYYMSG+EAEE VSFRS RDSSGHGSHTASTA GRYVANMNY+GL AGGAR
Sbjct: 188 KVIGARYYMSGHEAEEGSDRKVSFRSARDSSGHGSHTASTAVGRYVANMNYKGLGAGGAR 247
Query: 253 GGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIG 312
GGAP ARIAVYK CWDSGCYDVDLLAAFDDAIRDGVHI+SLSLGPE+PQGDYF DA+S+
Sbjct: 248 GGAPKARIAVYKVCWDSGCYDVDLLAAFDDAIRDGVHIMSLSLGPESPQGDYFDDAVSVA 307
Query: 313 SFHATSRGILVVASAGNEGNEGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESL 372
SFHA G+LVVAS GN+GN GS TN+APW+ T+AASSTDRDFTS+I LG+G N TGESL
Sbjct: 308 SFHAAKHGVLVVASVGNQGNPGSATNVAPWIITVAASSTDRDFTSDITLGNGVNITGESL 367
Query: 373 SLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRK 432
SL M+AS R+I ASEA+ GYFTPYQSSYC++SSL+ TKA+GKVLVCRH E S ESKL K
Sbjct: 368 SLLGMSASRRLIDASEAFTGYFTPYQSSYCVDSSLDKTKAKGKVLVCRHTEYSGESKLEK 427
Query: 433 SMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKT 492
S +VKEAGGVGMIL+DE + V+ PFVIPSAVVG KTG +ILSYI+ T +++I AKT
Sbjct: 428 SKIVKEAGGVGMILIDEANQGVSTPFVIPSAVVGTKTGERILSYINRTRMPMTRISRAKT 487
Query: 493 VLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMAC 552
VLG +PAP VAAFSSKGPN L PEILKPDVTAPGLNI+AAWSPA M+FNI+SGTSM+C
Sbjct: 488 VLGVQPAPCVAAFSSKGPNTLTPEILKPDVTAPGLNILAAWSPASAGMKFNIVSGTSMSC 547
Query: 553 PHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
PHVTGIATL+KAVHPSWSPSAIKSAIMTTAT LDK+H+PI DP RR NAFDYGSGF+N
Sbjct: 548 PHVTGIATLVKAVHPSWSPSAIKSAIMTTATILDKHHQPIRADPDRRRANAFDYGSGFVN 607
Query: 613 PRKVLSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDNSKCSQKLPAPYDLNYPSITVP 672
P +VL PGL+YD+ P D+ FLCS+GYDE+SLHLVT+DNS C + P DLNYPSI VP
Sbjct: 608 PSRVLDPGLVYDSNPEDFVAFLCSLGYDERSLHLVTKDNSTCDRAFKTPSDLNYPSIAVP 667
Query: 673 NLKGNFSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLTS 732
NL+ NFSVTR VTNVGK RSIYKAVV SP GV VTV P RL+F GQKI FTV+FK+ +
Sbjct: 668 NLEDNFSVTRVVTNVGKARSIYKAVVVSPTGVNVTVVPNRLVFTRIGQKIKFTVNFKVAA 727
Query: 733 PPKGYGFGYLSWKNGKLRVTSPLVVQVAPSDMGLMR 768
P KGY FG+LSWKNG+ +VTSPLVV+VAP+ GL+R
Sbjct: 728 PSKGYAFGFLSWKNGRTQVTSPLVVKVAPASHGLVR 763
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540894|ref|XP_003538919.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1155 bits (2988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/753 (74%), Positives = 639/753 (84%)
Query: 16 CYIFYLLVGVFLAENNICFSAKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQA 75
C FYL + V LA+ + CFSAKVYVVYMG+ TGEDP D+ + +HQMLA VH+GS+EQAQA
Sbjct: 10 CTFFYLFLAVLLAKTSSCFSAKVYVVYMGSKTGEDPDDILKHNHQMLASVHSGSIEQAQA 69
Query: 76 SHVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEESME 135
SHVYSYKH FRGFAAKLT++QA QI++MPGVVSVFPN KR+LHTTHSWDF+GL+G ESME
Sbjct: 70 SHVYSYKHAFRGFAAKLTNEQAYQISKMPGVVSVFPNAKRKLHTTHSWDFIGLLGNESME 129
Query: 136 IPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVI 195
I G STKNQ NII+GFIDTGIWPES SFSD MPP P WKG C+ GEAFNASSCNRKVI
Sbjct: 130 IHGHSTKNQENIIIGFIDTGIWPESSSFSDTDMPPVPRGWKGHCQLGEAFNASSCNRKVI 189
Query: 196 GARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGA 255
GARYY+SG+EAEE+ VSF S RDSSGHGSHTASTAAGRYVANMNY+GLAAGGARGGA
Sbjct: 190 GARYYISGHEAEEESDREVSFISARDSSGHGSHTASTAAGRYVANMNYKGLAAGGARGGA 249
Query: 256 PMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFH 315
P ARIAVYK CWDSGCYDVDLLAAFDDAIRDGVHI+SLSLGPE+PQGDYFSDA+S+ SFH
Sbjct: 250 PKARIAVYKVCWDSGCYDVDLLAAFDDAIRDGVHIISLSLGPESPQGDYFSDAVSVASFH 309
Query: 316 ATSRGILVVASAGNEGNEGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLC 375
A +LVVAS GN+GN GS TN+APW+ T+AASS DR+FTS+I LG+G N TGESLSL
Sbjct: 310 AAKHRVLVVASVGNQGNPGSATNVAPWIITVAASSIDRNFTSDITLGNGVNITGESLSLL 369
Query: 376 KMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMV 435
M+AS R+I ASEA++GYFTPYQSSYC++SSLN TKA+GKVLVCRHAE S ESKL KS +
Sbjct: 370 GMDASRRLIDASEAFSGYFTPYQSSYCVDSSLNKTKAKGKVLVCRHAEYSGESKLEKSKI 429
Query: 436 VKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLG 495
VK+AGGVGMIL+DE + V+ PFVIPSAVVG KTG +ILSYI+ T +S+I AKTVLG
Sbjct: 430 VKKAGGVGMILIDEANQGVSTPFVIPSAVVGTKTGERILSYINSTRMPMSRISKAKTVLG 489
Query: 496 SEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHV 555
+PAPRVAAFSSKGPNAL PEILKPDVTAPGLNI+AAWSPA M+FNI+SGTSM+CPH+
Sbjct: 490 VQPAPRVAAFSSKGPNALTPEILKPDVTAPGLNILAAWSPASAGMKFNIISGTSMSCPHI 549
Query: 556 TGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRK 615
TGIATL+KAVHPSWSPSAIKSAIMTTAT LDK+H+PI DP RR NAFDYGSGF+NP +
Sbjct: 550 TGIATLVKAVHPSWSPSAIKSAIMTTATILDKHHQPIRADPDRRRANAFDYGSGFVNPSR 609
Query: 616 VLSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDNSKCSQKLPAPYDLNYPSITVPNLK 675
VL PGL+YD+ P D+ FLCS+GYDE+SLHLVT DNS C + P DLNYPSI VPNL+
Sbjct: 610 VLDPGLVYDSHPEDFVAFLCSLGYDERSLHLVTGDNSTCDRAFKTPSDLNYPSIAVPNLE 669
Query: 676 GNFSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLTSPPK 735
NFSVTR VTNVGK RSIYKAVV SP GV VTV P RL+F G+KI FTV+FK+ +P K
Sbjct: 670 DNFSVTRVVTNVGKARSIYKAVVVSPAGVNVTVVPNRLVFTRIGEKIKFTVNFKVVAPSK 729
Query: 736 GYGFGYLSWKNGKLRVTSPLVVQVAPSDMGLMR 768
Y FG+LSWKNG+ +VTSPLV++VAP+ GL+R
Sbjct: 730 DYAFGFLSWKNGRTQVTSPLVIKVAPASHGLVR 762
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 768 | ||||||
| UNIPROTKB|Q0J050 | 769 | Os09g0530800 "Os09g0530800 pro | 0.942 | 0.941 | 0.425 | 5.2e-152 | |
| TAIR|locus:2127706 | 756 | AT4G10520 "AT4G10520" [Arabido | 0.916 | 0.931 | 0.415 | 6.1e-142 | |
| TAIR|locus:2131566 | 764 | SLP2 "AT4G34980" [Arabidopsis | 0.888 | 0.892 | 0.414 | 8.9e-141 | |
| UNIPROTKB|Q6H733 | 799 | P0026H03.20-1 "Putative subtil | 0.907 | 0.872 | 0.408 | 3.5e-139 | |
| TAIR|locus:2050215 | 772 | AIR3 "AT2G04160" [Arabidopsis | 0.954 | 0.949 | 0.403 | 4.4e-139 | |
| TAIR|locus:2168057 | 778 | SBT5.4 "AT5G59810" [Arabidopsi | 0.941 | 0.929 | 0.399 | 9.2e-139 | |
| TAIR|locus:2037895 | 774 | SBT3.5 "AT1G32940" [Arabidopsi | 0.957 | 0.949 | 0.394 | 1.5e-138 | |
| UNIPROTKB|Q7XTY8 | 776 | OSJNBa0019K04.9 "Os04g0573300 | 0.954 | 0.944 | 0.404 | 2.4e-138 | |
| TAIR|locus:2037915 | 773 | AT1G32950 "AT1G32950" [Arabido | 0.933 | 0.927 | 0.389 | 4.1e-136 | |
| TAIR|locus:2037935 | 777 | SBT3.3 "AT1G32960" [Arabidopsi | 0.928 | 0.917 | 0.400 | 5.2e-136 |
| UNIPROTKB|Q0J050 Os09g0530800 "Os09g0530800 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1483 (527.1 bits), Expect = 5.2e-152, P = 5.2e-152
Identities = 317/745 (42%), Positives = 442/745 (59%)
Query: 33 CFSAK--VYVVYMGTTT-GEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFA 89
C S++ VY+VYMG G P V HH MLA V GS + A + +YSY+HGF GFA
Sbjct: 19 CSSSRSNVYIVYMGERHHGLRPELVQEAHHGMLAAV-LGSEQAAMDAILYSYRHGFSGFA 77
Query: 90 AKLTDQQASQIAQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEESMEIPGFSTKNQVNIIV 149
A LT QA++++ PGVV V N LHTT SWDFMG+ S ++ + I+
Sbjct: 78 AVLTGGQAARLSDWPGVVRVVRNRVLDLHTTRSWDFMGVNPSPSGGGILLESRFGEDSII 137
Query: 150 GFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEED 209
G +DTGIWPES SF D G+ P +WKGQC +GE FNAS+CNRK+IGA++Y+ GYEAE
Sbjct: 138 GVLDTGIWPESASFRDDGIGEVPRRWKGQCVAGEKFNASNCNRKIIGAKWYVKGYEAEYG 197
Query: 210 IVET---VSFRSPRDSSGHGSHTASTAAGRYVANMNYXXXXXXXXXXXXXXXXXXVYKTC 266
+ T F S RD+ GHG+HTASTAAG VAN ++ VYK C
Sbjct: 198 KMNTSDIYEFMSARDAVGHGTHTASTAAGALVANASFRGLAKGVARGGAQRARLAVYKVC 257
Query: 267 WDSG-CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVA 325
W +G C D+LAAFDDAI DGV ++S+SLG P Y D +SIGSFHA ++G++VV
Sbjct: 258 WATGDCTAADILAAFDDAIHDGVDVISVSLGQAPPLPAYVDDVLSIGSFHAVAKGVVVVC 317
Query: 326 SAGNEGNEG-SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKM-NASARI 383
SAGN G +V N APW+ T+AA + DR F ++I+LG+ + + G++L K + S RI
Sbjct: 318 SAGNSGPYSETVINSAPWIVTVAAGTIDRIFLAKIILGNNSTYVGQTLYSGKHPSKSVRI 377
Query: 384 ISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVG 443
+ A + + + C SLN+T +G V++C + + + VK+A GVG
Sbjct: 378 VYAEDISSDNADDTDARSCTAGSLNATLVKGNVVLCFQTRAQRSASVAVE-TVKKARGVG 436
Query: 444 MILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKI-FPAKTVLGSEPAPRV 502
+I KD+A IP V + G IL+Y + +++ FP KT++G AP V
Sbjct: 437 VIFAQFLTKDIASSLDIPCVQVDYQVGTAILAYTTSMRNPVAQFSFP-KTIVGELVAPEV 495
Query: 503 AAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPA------VGKMQFNILSGTSMACPHVT 556
A FSS+GP++L+P ILKPD+ APG+NI+AAWSPA +G + F I SGTSM+CPH++
Sbjct: 496 AYFSSRGPSSLSPSILKPDIAAPGVNILAAWSPAAAISSAIGSVNFKIDSGTSMSCPHIS 555
Query: 557 GIATLIKAVHPSWSPSAIKSAIMTTATALDK-NHKPITVDPKGRRGNAFDYGSGFLNPRK 615
G+ L+K++HP+WSP+A+KSA++TTA D + ++ N FDYG G +NP +
Sbjct: 556 GVVALLKSMHPNWSPAAVKSALVTTANVHDAYGFEMVSEAAPYNDANPFDYGGGHVNPNR 615
Query: 616 VLSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDNSKCSQKLPAPYDLNYPSITVPNLK 675
PGL+YD DY FLCS+GY+ ++ +T+ + C + +LN PSIT+P L+
Sbjct: 616 AAHPGLVYDMGVSDYMRFLCSMGYNTSAISSMTQQQTTCQHTPKSQLNLNVPSITIPELR 675
Query: 676 GNFSVTRSVTNVGKPRSIYKXXXXXXXXXXXXXXXERLIFNSYGQKINFTVHFKLTSPPK 735
G +V+R+VTNVG S Y+ L FNS +K+ F V F+ K
Sbjct: 676 GKLTVSRTVTNVGPALSKYRARVEAPPGVDVTVSPSLLTFNSTVRKLPFKVTFQAKLKVK 735
Query: 736 G-YGFGYLSWKNGKLRVTSPLVVQV 759
G Y FG L+W++G V PLVV++
Sbjct: 736 GRYTFGSLTWEDGTHTVRIPLVVRI 760
|
|
| TAIR|locus:2127706 AT4G10520 "AT4G10520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1388 (493.7 bits), Expect = 6.1e-142, P = 6.1e-142
Identities = 307/738 (41%), Positives = 424/738 (57%)
Query: 36 AKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQ 95
+KVYVVY+G ++P V HHQML + GS E S VYSY+HGF GFAAKLT+
Sbjct: 27 SKVYVVYLGEKEHDNPESVTESHHQMLWSL-LGSKEAVLDSIVYSYRHGFSGFAAKLTES 85
Query: 96 QASQIAQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEESMEIPGFSTKNQ-VNIIVGFIDT 154
QA QI+++P VV V PN + TT +WD++G+ S + N N+IVG ID+
Sbjct: 86 QAQQISELPEVVQVIPNTLYEMTTTRTWDYLGVSPGNSDSL--LQKANMGYNVIVGVIDS 143
Query: 155 GIWPESPSFSDIGMPPAPAKWKGQCESGEAFNAS-SCNRKVIGARYYMSGYEAEEDIV-- 211
G+WPES F+D G P P++WKG CESGE FNAS CNRK+IGA+Y++ G AE +V
Sbjct: 144 GVWPESEMFNDKGFGPIPSRWKGGCESGELFNASIHCNRKLIGAKYFVDGLVAEFGVVNR 203
Query: 212 -ETVSFRSPRDSSGHGSHTASTAAGRYVANMNYXXXXXXXXXXXXXXXXXXVYKTCWDSG 270
+ + SPRD +GHG+H AST G ++ N++Y VYK CW
Sbjct: 204 TQNPEYLSPRDFAGHGTHVASTIGGSFLPNVSYVGLGRGTARGGAPGVHIAVYKACWSGY 263
Query: 271 CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNE 330
C D+L A D+AI DGV ILSLSLGP P ++ S+G+FHA ++GI VV +AGN
Sbjct: 264 CSGADVLKAMDEAIHDGVDILSLSLGPSVPLFPE-TEHTSVGAFHAVAKGIPVVIAAGNA 322
Query: 331 GNEG-SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIISASE- 388
G +++N+APW+ T+AA++ DR F + I LG+ G++ I E
Sbjct: 323 GPTAQTISNVAPWVLTVAATTQDRSFPTAITLGNNITILGQA-----------IYGGPEL 371
Query: 389 AYAGYFTPYQ--SSYC--LESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGM 444
+ G P S C L ++ NST GKV++C A ST S + V+ AGG+G+
Sbjct: 372 GFVGLTYPESPLSGDCEKLSANPNSTM-EGKVVLCFAA--STPSNAAIAAVIN-AGGLGL 427
Query: 445 ILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAA 504
I+ P + P + + G IL YI T I KI +KT+ G + +VA
Sbjct: 428 IMAKNPTHSLTPTRKFPWVSIDFELGTDILFYIRSTRSPIVKIQASKTLFGQSVSTKVAT 487
Query: 505 FSSKGPNALNPEILKPDVTAPGLNIIAAWSP--AVGKMQFNILSGTSMACPHVTGIATLI 562
FSS+GPN+++P ILKPD+ APG+NI+AA SP ++ F ++SGTSMA P V+G+ L+
Sbjct: 488 FSSRGPNSVSPAILKPDIAAPGVNILAAISPNSSINDGGFAMMSGTSMATPVVSGVVVLL 547
Query: 563 KAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRR-GNAFDYGSGFLNPRKVLSPGL 621
K++HP WSPSAIKSAI+TTA D + +PI D R+ + FDYG G +NP K + PGL
Sbjct: 548 KSLHPDWSPSAIKSAIVTTAWRTDPSGEPIFADGSSRKLADPFDYGGGLINPEKAVKPGL 607
Query: 622 IYDAQPIDYTVFLCSIGYDEKSLHLVTRDNSKCSQKLPAPYDLNYPSITVPNLKGNFSVT 681
IYD DY +++CS+ Y + S+ V + C P+ DLN PSIT+PNL+G ++T
Sbjct: 608 IYDMTTDDYVMYMCSVDYSDISISRVLGKITVCPNPKPSVLDLNLPSITIPNLRGEVTLT 667
Query: 682 RSVTNVGKPRSIYKXXXXXXXXXXXXXXXERLIFNSYGQKINFTVHFKLTSPPK-GYGFG 740
R+VTNVG S+YK L+F+ K +FTV T GY FG
Sbjct: 668 RTVTNVGPVNSVYKVVIDPPTGINVAVTPAELVFDYTTTKRSFTVRVSTTHKVNTGYYFG 727
Query: 741 YLSWKNGKLRVTSPLVVQ 758
L+W + V P+ V+
Sbjct: 728 SLTWTDNMHNVAIPVSVR 745
|
|
| TAIR|locus:2131566 SLP2 "AT4G34980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1377 (489.8 bits), Expect = 8.9e-141, P = 8.9e-141
Identities = 300/723 (41%), Positives = 433/723 (59%)
Query: 66 HAGSMEQAQASH-VYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKRRLHTTHSWD 124
H S E A+ S V+ Y F GF+A +T +A + P V++VF + +R LHTT S
Sbjct: 46 HWYSTEFAEESRIVHVYHTVFHGFSAVVTPDEADNLRNHPAVLAVFEDRRRELHTTRSPQ 105
Query: 125 FMGLMGEESMEIPGFSTKNQ-VNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGE 183
F+GL ++ + +S + ++I+G DTGIWPE SFSD+ + P P +W+G CESG
Sbjct: 106 FLGLQNQKGL----WSESDYGSDVIIGVFDTGIWPERRSFSDLNLGPIPKRWRGVCESGA 161
Query: 184 AFNASSCNRKVIGARYYMSGYEAEE--DIVETVSFRSPRDSSGHGSHTASTAAGRYVANM 241
F+ +CNRK+IGAR++ G +A I +TV F SPRD+ GHG+HT+STAAGR+
Sbjct: 162 RFSPRNCNRKIIGARFFAKGQQAAVIGGINKTVEFLSPRDADGHGTHTSSTAAGRHAFKA 221
Query: 242 NYXXXXXXXXXXXXXXXXXXVYKTCW-DSGCYDVDLLAAFDDAIRDGVHILSLSLGP-EA 299
+ YK CW DSGC D D+LAAFD A+RDGV ++S+S+G +
Sbjct: 222 SMSGYASGVAKGVAPKARIAAYKVCWKDSGCLDSDILAAFDAAVRDGVDVISISIGGGDG 281
Query: 300 PQGDYFSDAISIGSFHATSRGILVVASAGNEGNEG-SVTNLAPWMFTIAASSTDRDFTSE 358
Y+ D I+IGS+ A S+GI V +SAGNEG G SVTNLAPW+ T+ AS+ DR+F ++
Sbjct: 282 ITSPYYLDPIAIGSYGAASKGIFVSSSAGNEGPNGMSVTNLAPWVTTVGASTIDRNFPAD 341
Query: 359 IVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLV 418
+LGDG G SL + + R+ Y G +S C+E++L+ + RGK+++
Sbjct: 342 AILGDGHRLRGVSL-YAGVPLNGRMFPV--VYPGKSGMSSASLCMENTLDPKQVRGKIVI 398
Query: 419 CRHAESSTESKLRKSMVVKEAGGVGMILVD--EPGKD-VAIPFVIPSAVVGKKTGNKILS 475
C S ++ K +VVK+AGGVGMIL + G+ V +IP+ VG G++I +
Sbjct: 399 CDRGSSP---RVAKGLVVKKAGGVGMILANGASNGEGLVGDAHLIPACAVGSNEGDRIKA 455
Query: 476 YISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSP 535
Y S I+ I T++G +PAP +A+FS +GPN L+PEILKPD+ APG+NI+AAW+
Sbjct: 456 YASSHPNPIASIDFRGTIVGIKPAPVIASFSGRGPNGLSPEILKPDLIAPGVNILAAWTD 515
Query: 536 AVG---------KMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALD 586
AVG K +FNILSGTSMACPHV+G A L+K+ HP WSP+ I+SA+MTT +D
Sbjct: 516 AVGPTGLPSDPRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAVIRSAMMTTTNLVD 575
Query: 587 KNHKPITVDPKGRRGNAFDYGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGYDEKSLHL 646
+++ + + G+ +DYGSG LN + ++PGL+YD DY FLCSIGY K++ +
Sbjct: 576 NSNRSLIDESTGKSATPYDYGSGHLNLGRAMNPGLVYDITNDDYITFLCSIGYGPKTIQV 635
Query: 647 VTRDNSKC-SQKLPAPYDLNYPSITV--P-NLKGNFSVT--RSVTNVGKPRSIYKXXXXX 700
+TR +C + + P+P +LNYPSIT P N +G S T R+ TNVG+ ++Y+
Sbjct: 636 ITRTPVRCPTTRKPSPGNLNYPSITAVFPTNRRGLVSKTVIRTATNVGQAEAVYRARIES 695
Query: 701 XXXXXXXXXXERLIFNSYGQK----INFTVHFK-LTSPPKGYGFGYLSW-KNGKLRVTSP 754
RL+F S ++ + TV+ + + G FG ++W GK V SP
Sbjct: 696 PRGVTVTVKPPRLVFTSAVKRRSYAVTVTVNTRNVVLGETGAVFGSVTWFDGGKHVVRSP 755
Query: 755 LVV 757
+VV
Sbjct: 756 IVV 758
|
|
| UNIPROTKB|Q6H733 P0026H03.20-1 "Putative subtilisin-like proteinase AIR3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1362 (484.5 bits), Expect = 3.5e-139, P = 3.5e-139
Identities = 300/735 (40%), Positives = 422/735 (57%)
Query: 58 HHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKRRL 117
H ++LA V G E+A+ + YSY GFAA L A++IA+ PGVVSVFPN +L
Sbjct: 74 HCELLAGV-LGDKEKAREAIFYSYTRHINGFAANLDAAAAAKIAEKPGVVSVFPNRGHKL 132
Query: 118 HTTHSWDFMGLMGEESMEIPGFSTKNQV--NIIVGFIDTGIWPESPSFSDIGMPPAPAKW 175
HTT SW F+GL G K + + I+G +DTG+WPES SF D G+ P P+ W
Sbjct: 133 HTTRSWQFLGLAGVGGAPTGAAWKKARFGEDTIIGNLDTGVWPESESFRDDGLGPIPSWW 192
Query: 176 KGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAG 235
+G+C+ G+ +A SCNRK+IGAR++ GY + + T F +PRD+ GHG+HT STA G
Sbjct: 193 RGECQKGQD-DAFSCNRKLIGARFFNKGYASAVGNLNTSLFDTPRDTDGHGTHTLSTAGG 251
Query: 236 RYVANMNYXXXXXXXXXXXXXXXXXXVYKTCWD----SGCYDVDLLAAFDDAIRDGVHIL 291
VA + Y+ C+ S C+D D+LAAFD AI DGVH+L
Sbjct: 252 APVAGASVFGYGNGTASGGSPMARVAAYRVCYTPVNGSECFDADILAAFDAAIHDGVHVL 311
Query: 292 SLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNE-GSVTNLAPWMFTIAASS 350
S+SLG +A GDYF+D ++IGSFHA GI VV SAGN G G+V+N+APW+FT AAS+
Sbjct: 312 SVSLGGDA--GDYFADGLAIGSFHAVRHGIAVVCSAGNSGPAPGTVSNVAPWLFTAAAST 369
Query: 351 TDRDFTSEIVLGDGANFTGESLS---LCKMNASARIISASEAYAGYFTPYQSSYCLESSL 407
DR+F + +V D G+SLS L ++S +I +S A + T +S C SL
Sbjct: 370 MDREFPAYVVFND-TKLKGQSLSASALSPASSSFPMIDSSLAASPNRTQNESQLCFLGSL 428
Query: 408 NSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDE--PGKDV-AIPFVIPSAV 464
+ K +GK++VC ++ K V EAGG GM+L ++ G ++ A V+P+
Sbjct: 429 DPEKVKGKIVVCLRG---VNPRVEKGEAVLEAGGAGMVLANDVTTGNEIIADAHVLPATH 485
Query: 465 VGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTA 524
+ G + SY+ +T I +T LG++PAP +AAFSS+GPN + P ILKPD+TA
Sbjct: 486 IKFSDGQILFSYLKNTKSPAGTITRPETRLGTKPAPFMAAFSSQGPNTVTPGILKPDITA 545
Query: 525 PGLNIIAAWSPAVG---------KMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIK 575
PG++++AAW+ A ++ FN SGTSM+CPHV G+ L++ + P WSP+AI+
Sbjct: 546 PGVSVVAAWTRASAPTDLAFDKRRVAFNSESGTSMSCPHVAGVVGLLRTLRPDWSPAAIR 605
Query: 576 SAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLSPGLIYDAQPIDYTVFLC 635
SA+MTTA +D N + ++ N F +G+G ++P + ++PGL+YD +DY FLC
Sbjct: 606 SALMTTAVEVD-NERHAILNSSFAAANPFGFGAGHVSPARAMNPGLVYDLAAVDYLNFLC 664
Query: 636 SIGYDEKSLHLVTRDNS----KCSQKLPAPYDLNYPSITVPNLKGNFSVTRSVTNVGKPR 691
S+ Y+ + + +C P DLNYPSITV NL + +V R+V NVGKP
Sbjct: 665 SLSYNATVMAMFAGGGGAAPFRCPASPPKVQDLNYPSITVVNLTSSATVRRTVKNVGKP- 723
Query: 692 SIYKXXXXXXXXXXXXXXXERLIFNSYGQKINFTVHFKLT--SPPKGYGFGYLSWKNGKL 749
+YK + L F G+K F V F++T S Y FG L W NGK
Sbjct: 724 GVYKAYVTSPAGVRVTVSPDTLPFLLKGEKKTFQVRFEVTNASLAMDYSFGALVWTNGKQ 783
Query: 750 RVTSPLVVQVAPSDM 764
V SPLVV+ M
Sbjct: 784 FVRSPLVVKTTTPTM 798
|
|
| TAIR|locus:2050215 AIR3 "AT2G04160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1361 (484.2 bits), Expect = 4.4e-139, P = 4.4e-139
Identities = 315/780 (40%), Positives = 455/780 (58%)
Query: 14 SYCYIFYLLVGVFLAENNICFS--AKVYVVYMGTTT--GE---DPLDVWRQHHQMLAVVH 66
++ ++ LL+ V ++ +I S + YVVY G + GE D +D ++ H
Sbjct: 6 NFSFLLLLLL-VHMSSKHILASKDSSSYVVYFGAHSHVGEITEDAMDRVKETHYDFLGSF 64
Query: 67 AGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKRRLHTTHSWDFM 126
GS E+A + YSY GFAA L A +I++ P VVSVFPN +LHTT SWDF+
Sbjct: 65 TGSRERATDAIFYSYTKHINGFAAHLDHDLAYEISKHPEVVSVFPNKALKLHTTRSWDFL 124
Query: 127 GLMGEESMEIPGFSTKNQVNI----IVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESG 182
GL E + +P S + I+ +DTG+WPES SF D G+ P P++WKG C++
Sbjct: 125 GL--EHNSYVPSSSIWRKARFGEDTIIANLDTGVWPESKSFRDEGLGPIPSRWKGICQNQ 182
Query: 183 EAFNAS-SCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANM 241
+ +A+ CNRK+IGARY+ GY A + + SF SPRD GHGSHT STAAG +V +
Sbjct: 183 K--DATFHCNRKLIGARYFNKGYAAAVGHLNS-SFDSPRDLDGHGSHTLSTAAGDFVPGV 239
Query: 242 NYXXXXXXXXXXXXXXXXXXVYKTCWD----SGCYDVDLLAAFDDAIRDGVHILSLSLGP 297
+ YK CW + CYD D+LAAFD AI DG ++S+SLG
Sbjct: 240 SIFGQGNGTAKGGSPRARVAAYKVCWPPVKGNECYDADVLAAFDAAIHDGADVISVSLGG 299
Query: 298 EAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFT 356
E P +F+D+++IGSFHA + I+VV SAGN G + +V+N+APW T+ AS+ DR+F
Sbjct: 300 E-PTS-FFNDSVAIGSFHAAKKRIVVVCSAGNSGPADSTVSNVAPWQITVGASTMDREFA 357
Query: 357 SEIVLGDGANFTGESLSLCKM-NASARIISAS-EAYAGYFTPYQSSYCLESSLNSTKARG 414
S +VLG+G ++ G+SLS + +A I AS A A + + C SL+ K +G
Sbjct: 358 SNLVLGNGKHYKGQSLSSTALPHAKFYPIMASVNAKAKNASALDAQLCKLGSLDPIKTKG 417
Query: 415 KVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDE--PGKDV-AIPFVIPSAVVGKKTGN 471
K+LVC ++ ++ K V GG+GM+L + G D+ A P V+P+ + K
Sbjct: 418 KILVCLRGQNG---RVEKGRAVALGGGIGMVLENTYVTGNDLLADPHVLPATQLTSKDSF 474
Query: 472 KILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIA 531
+ YIS T K I+ I P++T LG +PAP +A+FSSKGP+ + P+ILKPD+TAPG+++IA
Sbjct: 475 AVSRYISQTKKPIAHITPSRTDLGLKPAPVMASFSSKGPSIVAPQILKPDITAPGVSVIA 534
Query: 532 AWSPAVG---------KMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTA 582
A++ AV ++ FN +SGTSM+CPH++GIA L+K +PSWSP+AI+SAIMTTA
Sbjct: 535 AYTGAVSPTNEQFDPRRLLFNAISGTSMSCPHISGIAGLLKTRYPSWSPAAIRSAIMTTA 594
Query: 583 TALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGYDEK 642
T +D PI + + F +G+G + P ++PGL+YD DY FLCS+GY+
Sbjct: 595 TIMDDIPGPIQ-NATNMKATPFSFGAGHVQPNLAVNPGLVYDLGIKDYLNFLCSLGYNAS 653
Query: 643 SLHLVTRDNSKCSQKLPAPYDLNYPSITVPNLKGN-FSVTRSVTNVGKPRSIYKXXXXXX 701
+ + + +N CS + +LNYPSITVPNL + +V+R+V NVG+P S+Y
Sbjct: 654 QISVFSGNNFTCSSPKISLVNLNYPSITVPNLTSSKVTVSRTVKNVGRP-SMYTVKVNNP 712
Query: 702 XXXXXXXXXERLIFNSYGQKINFTVHFKLT--SPPKGYGFGYLSWKNGKLRVTSPLVVQV 759
L F G++ F V + + KGY FG L W + K RV SP+VV++
Sbjct: 713 QGVYVAVKPTSLNFTKVGEQKTFKVILVKSKGNVAKGYVFGELVWSDKKHRVRSPIVVKL 772
|
|
| TAIR|locus:2168057 SBT5.4 "AT5G59810" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1358 (483.1 bits), Expect = 9.2e-139, P = 9.2e-139
Identities = 307/769 (39%), Positives = 429/769 (55%)
Query: 21 LLVGVFLAENNICFSAKV-YVVYMGTTT-----GEDPLDVWRQHHQMLAVVHAGSMEQAQ 74
LLV +F + F+ K Y+VY+G+ LD H+ GS E A+
Sbjct: 26 LLVTLFFSP---AFALKKSYIVYLGSHAHLPQISSAHLDGVAHSHRTFLASFVGSHENAK 82
Query: 75 ASHVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEESM 134
+ YSYK GFAA L + +A++IA+ P VVSVFPN R+LHTTHSW+FM L+ + +
Sbjct: 83 EAIFYSYKRHINGFAAILDENEAAEIAKHPDVVSVFPNKGRKLHTTHSWNFM-LLAKNGV 141
Query: 135 EIPGFSTKNQV----NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSC 190
+ S N+ + I+ +DTG+WPES SFSD G PA+WKG+C C
Sbjct: 142 -VHKSSLWNKAGYGEDTIIANLDTGVWPESKSFSDEGYGAVPARWKGRCHKDVP-----C 195
Query: 191 NRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYXXXXXXX 250
NRK+IGARY+ GY A + S+ + RD GHGSHT STAAG +V N
Sbjct: 196 NRKLIGARYFNKGYLAYTGLPSNASYETCRDHDGHGSHTLSTAAGNFVPGANVFGIGNGT 255
Query: 251 XXXXXXXXXXXVYKTCW---DSG-CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFS 306
YK CW D C+D D+LAA + AI DGV +LS S+G +A GDY S
Sbjct: 256 ASGGSPKARVAAYKVCWPPVDGAECFDADILAAIEAAIEDGVDVLSASVGGDA--GDYMS 313
Query: 307 DAISIGSFHATSRGILVVASAGNEG-NEGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGA 365
D I+IGSFHA G+ VV SAGN G G+V+N+APW+ T+ ASS DR+F + + L +G
Sbjct: 314 DGIAIGSFHAVKNGVTVVCSAGNSGPKSGTVSNVAPWVITVGASSMDREFQAFVELKNGQ 373
Query: 366 NFTGESLSL-CKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAES 424
+F G SLS +ISA++A + C + SL+ K +GK+LVC ++
Sbjct: 374 SFKGTSLSKPLPEEKMYSLISAADANVANGNVTDALLCKKGSLDPKKVKGKILVCLRGDN 433
Query: 425 STESKLRKSMVVKEAGGVGMILVDEP--GKDV-AIPFVIPSAVVGKKTGNKILSYISHTS 481
+ ++ K M AG GM+L ++ G ++ + V+P++ + K G + SY+S T
Sbjct: 434 A---RVDKGMQAAAAGAAGMVLCNDKASGNEIISDAHVLPASQIDYKDGETLFSYLSSTK 490
Query: 482 KAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVG--- 538
I L ++PAP +A+FSS+GPN + P ILKPD+TAPG+NIIAA++ A G
Sbjct: 491 DPKGYIKAPTATLNTKPAPFMASFSSRGPNTITPGILKPDITAPGVNIIAAFTEATGPTD 550
Query: 539 ------KMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPI 592
+ FN SGTSM+CPH++G+ L+K +HP WSP+AI+SAIMTT+ + KP+
Sbjct: 551 LDSDNRRTPFNTESGTSMSCPHISGVVGLLKTLHPHWSPAAIRSAIMTTSRTRNNRRKPM 610
Query: 593 TVDPKGRRGNAFDYGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDNS 652
VD ++ N F YGSG + P K PGL+YD DY FLC++GY+ + L D
Sbjct: 611 -VDESFKKANPFSYGSGHVQPNKAAHPGLVYDLTTGDYLDFLCAVGYNNTVVQLFAEDPQ 669
Query: 653 KCSQKLPAPYDLNYPSITVPNLKGNFSVTRSVTNVGKPRSIYKXXXXXXXXXXXXXXXER 712
++ D NYPSITVPNL G+ +VTR + NVG P + Y ++
Sbjct: 670 YTCRQGANLLDFNYPSITVPNLTGSITVTRKLKNVGPPAT-YNARFREPLGVRVSVEPKQ 728
Query: 713 LIFNSYGQKINFTVHFK-LTSPPKGYGFGYLSWKNGKLRVTSPLVVQVA 760
L FN G+ F + + L P GY FG L+W + V SP+VVQ++
Sbjct: 729 LTFNKTGEVKIFQMTLRPLPVTPSGYVFGELTWTDSHHYVRSPIVVQLS 777
|
|
| TAIR|locus:2037895 SBT3.5 "AT1G32940" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1356 (482.4 bits), Expect = 1.5e-138, P = 1.5e-138
Identities = 303/768 (39%), Positives = 438/768 (57%)
Query: 16 CYIFYLLV-GVFLAENNICFS--AKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQ 72
C + +LV + + N + S +KV++VY+G +DP V HHQML+ + GS
Sbjct: 4 CRVLLVLVLSLVIVLNVVRASDESKVHIVYLGEKQHDDPEFVSESHHQMLSSL-LGSKVD 62
Query: 73 AQASHVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEE 132
A S VYSY+HGF GFAAKLT+ QA ++A P VV V + L TT +WD++GL
Sbjct: 63 AHESMVYSYRHGFSGFAAKLTESQAKKLADSPEVVHVMADSFYELATTRTWDYLGLSVAN 122
Query: 133 SMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNR 192
+ T +I+GFIDTG+WPES SF+D G+ P P+ WKG CESGE F +++CNR
Sbjct: 123 PNNLLN-DTNMGDQVIIGFIDTGVWPESESFNDNGVGPIPSHWKGGCESGEKFISTNCNR 181
Query: 193 KVIGARYYMSGYEAEEDIVETVSFR---SPRDSSGHGSHTASTAAGRYVANMNYXXXXXX 249
K+IGA+Y+++G+ AE + T R S RD GHG+HTAS A G +V N++Y
Sbjct: 182 KLIGAKYFINGFLAENEGFNTTESRDYISARDFIGHGTHTASIAGGSFVPNISYKGLAGG 241
Query: 250 XXXXXXXXXXXXVYKTCW--DS----GCYDVDLLAAFDDAIRDGVHILSLSLG---PEAP 300
+YK CW D C D+L A D+++ DGV +LSLSLG P P
Sbjct: 242 NLRGGAPRARIAIYKACWYVDQLGAVACSSSDILKAMDESMHDGVDVLSLSLGAQIPLYP 301
Query: 301 QGDYFSDAISIGSFHATSRGILVVASAGNEGNEG-SVTNLAPWMFTIAASSTDRDFTSEI 359
+ D D I+ G+FHA ++GI+VV + GN G +V N APW+ T+AA++ DR F + I
Sbjct: 302 ETD-LRDRIATGAFHAVAKGIIVVCAGGNSGPAAQTVLNTAPWIITVAATTLDRSFPTPI 360
Query: 360 VLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKAR-GKVLV 418
LG+ G++L + ++ A G+ S C +LN + GKV++
Sbjct: 361 TLGNRKVILGQALYTGQELGFTSLVYPENA--GFTNETFSGVCERLNLNPNRTMAGKVVL 418
Query: 419 CRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFV--IPSAVVGKKTGNKILSY 476
C + + R + VK AGG+G+I+ PG ++ P P + + G +L Y
Sbjct: 419 CFTTNTLFTAVSRAASYVKAAGGLGVIIARNPGYNLT-PCRDDFPCVAIDYELGTDVLLY 477
Query: 477 ISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSP- 535
I T + KI P++T++G +VA FSS+GPN+++P ILKPD+ APG++I+AA SP
Sbjct: 478 IRSTRSPVVKIQPSRTLVGQPVGTKVATFSSRGPNSISPAILKPDIGAPGVSILAATSPD 537
Query: 536 ---AVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPI 592
+VG F+IL+GTSMA P V G+ L+KA+HP+WSP+A +SAI+TTA D + I
Sbjct: 538 SNSSVGG--FDILAGTSMAAPVVAGVVALLKALHPNWSPAAFRSAIVTTAWRTDPFGEQI 595
Query: 593 TVDPKGRR-GNAFDYGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDN 651
+ R+ + FDYG G +NP K PGLIYD P DY ++LCS GY++ S+ + +
Sbjct: 596 FAEGSSRKVADPFDYGGGIVNPEKAADPGLIYDMGPRDYILYLCSAGYNDSSITQLVGNV 655
Query: 652 SKCSQKLPAPYDLNYPSITVPNLKGNFSVTRSVTNVGKPRSIYKXXXXXXXXXXXXXXXE 711
+ CS + D+N PSIT+P+LK ++TR+VTNVG S+YK E
Sbjct: 656 TVCSTPKTSVLDVNLPSITIPDLKDEVTLTRTVTNVGTVDSVYKVVVEPPLGIQVVVAPE 715
Query: 712 RLIFNSYGQKINFTVHFKLTSPPK-GYGFGYLSWKNGKLRVTSPLVVQ 758
L+FNS + ++FTV T G+ FG L W + VT P+ V+
Sbjct: 716 TLVFNSKTKNVSFTVRVSTTHKINTGFYFGNLIWTDSMHNVTIPVSVR 763
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| UNIPROTKB|Q7XTY8 OSJNBa0019K04.9 "Os04g0573300 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1354 (481.7 bits), Expect = 2.4e-138, P = 2.4e-138
Identities = 310/767 (40%), Positives = 430/767 (56%)
Query: 22 LVGVFL-AENNICF-SAKVYVVYMGTTTGEDPLDVWRQHH-QMLAVVHAGSMEQAQ--AS 76
LV V L A + C + K Y+V M + D + + + + V + +E + AS
Sbjct: 15 LVTVLLQASLSACAPTPKTYIVQMAASEMPSSFDFYHEWYASTVKSVSSSQLEDEEDDAS 74
Query: 77 H--VYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEESM 134
+Y+Y+ F GFAA+L +++A +A+ GV++V P +LHTT S DF+G+ E S
Sbjct: 75 TRIIYNYETAFHGFAAQLDEEEAELMAEADGVLAVIPETVLQLHTTRSPDFLGIGPEVSN 134
Query: 135 EIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKV 194
I S + +++VG +DTGIWPESPSFSD G+ P PAKWKG C++G F ++CNRK+
Sbjct: 135 RIWSDSLADH-DVVVGVLDTGIWPESPSFSDKGLGPVPAKWKGLCQTGRGFTTANCNRKI 193
Query: 195 IGARYYMSGYEAEED-IVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYXXXXXXXXXX 253
+GAR + +GYEA I ET +SPRD GHG+HTA+TAAG V + N
Sbjct: 194 VGARIFYNGYEASSGPINETTELKSPRDQDGHGTHTAATAAGSPVQDANLYGYAGGVARG 253
Query: 254 XXXXXXXXVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGS 313
YK CW GC+ D+LAA D A+ DGV +LS+SLG A + Y+ D++SI S
Sbjct: 254 MAPRARVAAYKVCWAGGCFSSDILAAVDRAVSDGVDVLSISLGGGASR--YYLDSLSIAS 311
Query: 314 FHATSRGILVVASAGNEGNEG-SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESL 372
F A G+ V SAGN G + S+TNL+PW+ T+ AS+ DRDF + + LG+GAN TG SL
Sbjct: 312 FGAMQMGVFVACSAGNAGPDPISLTNLSPWITTVGASTMDRDFPATVTLGNGANITGVSL 371
Query: 373 SLCKMNASARIISASEAYAGYFT--PYQSSYCLESSLNSTKARGKVLVCRHAESSTESKL 430
N S + Y G + P S CLE +L GK+++C + ++
Sbjct: 372 YKGLRNLSPQE-QYPVVYLGGNSSMPDPRSLCLEGTLQPHDVSGKIVIC---DRGISPRV 427
Query: 431 RKSMVVKEAGGVGMILVDEP--GKD-VAIPFVIPSAVVGKKTGNKILSYISHTSKAISKI 487
+K VVKEAGG+GMIL + G++ VA ++P+ VG+ G SY K + +
Sbjct: 428 QKGQVVKEAGGIGMILANTAANGEELVADSHLLPAVAVGEAEGIAAKSYSKSAPKPTATL 487
Query: 488 FPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWS----PAV-----G 538
T LG P+P VAAFSS+GPN L EILKPDV APG+NI+AAWS P+
Sbjct: 488 SFGGTKLGIRPSPVVAAFSSRGPNILTLEILKPDVVAPGVNILAAWSGDASPSSLSSDSR 547
Query: 539 KMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKG 598
++ FNILSGTSM+CPHV G+A LIKA HP WSP+ IKSA+MTTA D ++P+ G
Sbjct: 548 RVGFNILSGTSMSCPHVAGVAALIKASHPDWSPAQIKSALMTTAYVHDNTYRPMKDAATG 607
Query: 599 RRGNAFDYGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRD-NSKCSQK 657
+ F++G+G ++P + L+PGL+YD DY FLC+ L T++ N C
Sbjct: 608 KASTPFEHGAGHIHPVRALTPGLVYDIGQADYLEFLCTQHMTPMQLRTFTKNSNMTCRHT 667
Query: 658 LPAPYDLNYPSITV---PNLKGNFSVTRSVTNVGKPRSIYKXXXXXXXXXXXXXXXERLI 714
+ DLNYP+I+V +V R+VTNVG P S Y L
Sbjct: 668 FSSASDLNYPAISVVFADQPSKALTVRRTVTNVGPPSSTYHVKVTKFKGADVIVEPNTLH 727
Query: 715 FNSYGQKINFTVHFKLTSPPKGYGFGYLSWKNGKLRVTSPLVVQVAP 761
F S QK+++ V + K FG LSW +G V SP+V+ P
Sbjct: 728 FVSTNQKLSYKVTVTTKAAQKAPEFGALSWSDGVHIVRSPVVLTWLP 774
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| TAIR|locus:2037915 AT1G32950 "AT1G32950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1333 (474.3 bits), Expect = 4.1e-136, P = 4.1e-136
Identities = 289/742 (38%), Positives = 419/742 (56%)
Query: 36 AKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQ 95
+KV++VY+G +DP V HHQML+ + GS + A S VYSY+HGF GFAAKLT
Sbjct: 27 SKVHIVYLGEKQHDDPKFVTESHHQMLSSL-LGSKDDAHESMVYSYRHGFSGFAAKLTKS 85
Query: 96 QASQIAQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEESMEIPGFSTKNQVNIIVGFIDTG 155
QA +IA P V+ V P+ L TT WD++G + S + T I+G IDTG
Sbjct: 86 QAKKIADSPEVIHVIPDSYYELATTRIWDYLGPSADNSKNLVS-DTNMGDQTIIGVIDTG 144
Query: 156 IWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDI--VET 213
+WPES SF+D G+ P P+ WKG CE GE F +++CNRK+IGA+Y+++G+ AE E+
Sbjct: 145 VWPESESFNDYGVGPVPSHWKGGCEPGENFISTNCNRKLIGAKYFINGFLAENQFNATES 204
Query: 214 VSFRSPRDSSGHGSHTASTAAGRYVANMNYXXXXXXXXXXXXXXXXXXVYKTCW-----D 268
+ S RD GHG+H AS A G +V N++Y +YK CW D
Sbjct: 205 PDYISARDFDGHGTHVASIAGGSFVPNVSYKGLGRGTLRGGAPRARIAMYKACWYINELD 264
Query: 269 S-GCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDY--FSDAISIGSFHATSRGILVVA 325
C D++ A D+AI DGV +LS+SLG P D I+ G+FHA ++GI+VV
Sbjct: 265 GVTCSFSDIMKAIDEAIHDGVDVLSISLGGRVPLNSETDLRDGIATGAFHAVAKGIVVVC 324
Query: 326 SAGNEG-NEGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARII 384
+ GN G + +V N APW+ T+AA++ DR F + I+LG+ G+++ + ++
Sbjct: 325 AGGNAGPSSQTVVNTAPWILTVAATTLDRSFATPIILGNNQVILGQAMYIGPELGFTSLV 384
Query: 385 SASEAYAGYFTPYQSSYCLESSLNSTKAR-GKVLVC-RHAESSTESKLRKSMVVKEAGGV 442
+ G S C +LNS + GKV++C A T S +VK AGG+
Sbjct: 385 YPEDP--GNSIDTFSGVCESLNLNSNRTMAGKVVLCFTTARDFTVVSTAAS-IVKAAGGL 441
Query: 443 GMILVDEPGKDVAIPFV--IPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAP 500
G+I+ PG ++A P P + + G IL YI +T + KI P++T++G
Sbjct: 442 GLIIARNPGYNLA-PCSDDFPCVAIDNELGTDILFYIRYTGSPVVKIQPSRTLVGEPVGT 500
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSP--AVGKMQFNILSGTSMACPHVTGI 558
+VA FSS+GPN+++P ILKPD+ APG++I+AA SP + F + SGTSMA P ++G+
Sbjct: 501 KVATFSSRGPNSISPAILKPDIAAPGVSILAATSPNDTLNAGGFVMRSGTSMAAPVISGV 560
Query: 559 ATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRR-GNAFDYGSGFLNPRKVL 617
L+K++HP WSP+A +SAI+TTA D + I + + + FDYG G +NP K
Sbjct: 561 IALLKSLHPDWSPAAFRSAIVTTAWRTDPFGEQIAAESSSLKVPDPFDYGGGLVNPEKAA 620
Query: 618 SPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDNSKCSQKLPAPYDLNYPSITVPNLKGN 677
PGLI D DY ++LCS GY++ S+ + + CS P+ D+N PSIT+PNLK
Sbjct: 621 EPGLILDMDSQDYVLYLCSAGYNDSSISRLVGKVTVCSNPKPSVLDINLPSITIPNLKDE 680
Query: 678 FSVTRSVTNVGKPRSIYKXXXXXXXXXXXXXXXERLIFNSYGQKINFTVHFKLTSPPK-G 736
++TR+VTNVG S+YK E L+FNS + ++FTV T G
Sbjct: 681 VTLTRTVTNVGPVDSVYKVLVEPPLGIQVVVTPETLVFNSKTKSVSFTVIVSTTHKINTG 740
Query: 737 YGFGYLSWKNGKLRVTSPLVVQ 758
+ FG L+W + V P+ V+
Sbjct: 741 FYFGSLTWTDSIHNVVIPVSVR 762
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| TAIR|locus:2037935 SBT3.3 "AT1G32960" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1332 (473.9 bits), Expect = 5.2e-136, P = 5.2e-136
Identities = 299/747 (40%), Positives = 421/747 (56%)
Query: 36 AKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQ 95
+KV++VY+G DP V HHQMLA + GS + A S VYSY+HGF GFAAKLT
Sbjct: 30 SKVHIVYLGEKKHHDPEFVTESHHQMLASL-LGSKKDADDSMVYSYRHGFSGFAAKLTKS 88
Query: 96 QASQIAQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEESMEIPGFSTKNQVNIIVGFIDTG 155
QA +IA +P VV V P+ L TT +W+++GL + T +I+G IDTG
Sbjct: 89 QAKKIADLPEVVHVIPDGFHELATTRTWEYLGLSSANPKNLLN-DTNMGDQVIIGVIDTG 147
Query: 156 IWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEE---DIVE 212
+WPES SF+D G+ P P KWKG CESGE F ++ CNRK+IGA+Y+++G+ AE + E
Sbjct: 148 VWPESESFNDNGVGPIPRKWKGGCESGENFRSTDCNRKLIGAKYFINGFLAENKGFNTTE 207
Query: 213 TVSFRSPRDSSGHGSHTASTAAGRYVANMNYXXXXXXXXXXXXXXXXXXVYKTCWD---- 268
+ + S RD GHG+H AS A G +V N++Y +YK CW
Sbjct: 208 SRDYISARDFDGHGTHVASIAGGSFVPNVSYKGLAGGTLRGGAPRARIAMYKACWFHEEL 267
Query: 269 SG--CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDY--FSDAISIGSFHATSRGILVV 324
G C D D++ A D+AI DGV +LS+SL + P D + G FHA ++GI+VV
Sbjct: 268 KGVTCSDSDIMKAIDEAIHDGVDVLSISLVGQIPLNSETDIRDEFATGLFHAVAKGIVVV 327
Query: 325 ASAGNEGNEG-SVTNLAPWMFTIAASSTDRDFTSEIVLGDG------ANFTGESLSLCKM 377
+ GN+G +V N+APW+ T+AA++ DR F + I LG+ A +TG L L +
Sbjct: 328 CAGGNDGPAAQTVVNIAPWILTVAATTLDRSFPTPITLGNNKVILGQATYTGPELGLTSL 387
Query: 378 NASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVK 437
+ +E ++G +S L + N T A KV++C A + + R + VK
Sbjct: 388 VYPENARNNNETFSGVC---ES---LNLNPNYTMAM-KVVLCFTASRTNAAISRAASFVK 440
Query: 438 EAGGVGMILVDEPGKDVAIPFV--IPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLG 495
AGG+G+I+ P ++ P P V + G ILSYI T + KI ++T+ G
Sbjct: 441 AAGGLGLIISRNPVYTLS-PCNDDFPCVAVDYELGTDILSYIRSTRSPVVKIQRSRTLSG 499
Query: 496 SEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSP--AVGKMQFNILSGTSMACP 553
+V FSS+GPN+++P ILKPD+ APG+ I+AA SP + F +LSGTSMA P
Sbjct: 500 QPVGTKVVNFSSRGPNSMSPAILKPDIAAPGVRILAATSPNDTLNVGGFAMLSGTSMATP 559
Query: 554 HVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRR-GNAFDYGSGFLN 612
++G+ L+KA+HP WSP+A +SAI+TTA D + I + R+ + FDYG G +N
Sbjct: 560 VISGVIALLKALHPEWSPAAFRSAIVTTAWRTDPFGEQIFAEGSSRKVSDPFDYGGGIVN 619
Query: 613 PRKVLSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDNSKCSQKLPAPYDLNYPSITVP 672
P K PGLIYD P DY ++LCS GY++ S+ + + CS P+ D+N PSIT+P
Sbjct: 620 PEKAAEPGLIYDMGPQDYILYLCSAGYNDSSISQLVGQITVCSNPKPSVLDVNLPSITIP 679
Query: 673 NLKGNFSVTRSVTNVGKPRSIYKXXXXXXXXXXXXXXXERLIFNSYGQKINFTVHFKLTS 732
NLK ++TR+VTNVG S+YK E L+FNS ++FTV T
Sbjct: 680 NLKDEVTLTRTVTNVGLVDSVYKVSVEPPLGVRVVVTPETLVFNSKTISVSFTVRVSTTH 739
Query: 733 PPK-GYGFGYLSWKNGKLRVTSPLVVQ 758
GY FG L+W + V PL V+
Sbjct: 740 KINTGYYFGSLTWTDSVHNVVIPLSVR 766
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00005977001 | SubName- Full=Chromosome chr4 scaffold_162, whole genome shotgun sequence; (788 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 768 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-108 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 3e-32 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 4e-25 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 3e-24 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 2e-17 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-17 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 3e-17 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 4e-17 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 6e-17 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 6e-17 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 2e-15 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 2e-14 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-14 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 5e-14 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 7e-14 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 2e-13 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 4e-13 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 6e-13 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 1e-12 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 2e-12 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 8e-12 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 1e-11 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 3e-11 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 9e-11 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 3e-10 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 3e-10 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 3e-10 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 3e-10 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 5e-10 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 2e-09 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 2e-09 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 3e-09 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 3e-09 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 7e-09 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 1e-08 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 2e-08 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 6e-08 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 6e-08 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 4e-07 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 5e-07 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 8e-07 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 2e-06 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 2e-06 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 3e-06 | |
| PTZ00262 | 639 | PTZ00262, PTZ00262, subtilisin-like protease; Prov | 1e-05 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 4e-05 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 4e-05 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 6e-05 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 9e-05 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 2e-04 | |
| cd00538 | 126 | cd00538, PA, PA: Protease-associated (PA) domain | 2e-04 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 5e-04 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 5e-04 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 6e-04 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 8e-04 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 0.001 | |
| cd04056 | 361 | cd04056, Peptidases_S53, Peptidase domain in the S | 0.001 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 0.002 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 0.002 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 332 bits (854), Expect = e-108
Identities = 122/236 (51%), Positives = 150/236 (63%), Gaps = 5/236 (2%)
Query: 117 LHTTHSWDFMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWK 176
LHTT S DF+GL G + G + + II+G +DTGIWPE PSF+D+G P P W
Sbjct: 3 LHTTRSPDFLGLPGAWGGSLLGAANAGE-GIIIGVLDTGIWPEHPSFADVGGGPYPHTWP 61
Query: 177 GQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGR 236
G C +GE FN SCN K+IGARY+ GY+A +RSPRD GHG+HTASTAAG
Sbjct: 62 GDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGN 121
Query: 237 YVANMNYRGLAAGGARGGAPMARIAVYKTCW-DSGCYDVDLLAAFDDAIRDGVHILSLSL 295
V N + G A G A G AP ARIAVYK CW D GC+ D+LAA D AI DGV ++S S+
Sbjct: 122 VVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYSI 181
Query: 296 GPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNE-GSVTNLAPWMFTIAASS 350
G +P D + D I+I HA GI V ASAGN G +V N+APW+ T+AAS+
Sbjct: 182 GGGSP--DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST 235
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 3e-32
Identities = 40/72 (55%), Positives = 51/72 (70%), Gaps = 6/72 (8%)
Query: 518 LKPDVTAPGLNIIAAWSPAVGKM------QFNILSGTSMACPHVTGIATLIKAVHPSWSP 571
LKPD+ APG++I+AAW+P F +SGTSMA PHV G+A L+K+ HP WSP
Sbjct: 236 LKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSP 295
Query: 572 SAIKSAIMTTAT 583
+AIKSA+MTTA
Sbjct: 296 AAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 4e-25
Identities = 49/138 (35%), Positives = 69/138 (50%), Gaps = 13/138 (9%)
Query: 478 SHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAV 537
+ AI+ A TV A V SS+GP + +KPD+ APG++I++ P
Sbjct: 170 ATAPSAIT--VGASTVADVAEADTVGPSSSRGPPTSD-SAIKPDIVAPGVDIMSTA-PGS 225
Query: 538 GKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPK 597
G + +SGTSMA PHV G A L+K HP WSP+ IK+A+M TA L D
Sbjct: 226 GT-GYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPL--------YDSD 276
Query: 598 GRRGNAFDYGSGFLNPRK 615
G G+G ++ +
Sbjct: 277 GVVYPVSRQGAGRVDALR 294
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 3e-24
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 12/133 (9%)
Query: 359 IVLGDGANFTGESLSLCKMNASARIISASEAYAGYF-TPYQSSYCLESSLNSTKARGKVL 417
+ LG+G G+SL + + Y +S CL SL+ +K +GK++
Sbjct: 2 VTLGNGKTIVGQSLY------PGNLKTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIV 55
Query: 418 VCRHAESSTESKLRKSMVVKEAGGVGMILVDEP---GKDVAIPFVIPSAVVGKKTGNKIL 474
+C S++ K VK AGG GMIL ++P VA V+P+ V + G IL
Sbjct: 56 LCDR--GGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAIL 113
Query: 475 SYISHTSKAISKI 487
SYI+ TS + I
Sbjct: 114 SYINSTSNPTATI 126
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 2e-17
Identities = 57/214 (26%), Positives = 79/214 (36%), Gaps = 52/214 (24%)
Query: 147 IIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEA 206
+ V IDTG+ P+ P +
Sbjct: 1 VTVAVIDTGVDPDHPDLDGLFGGGDGGND------------------------------- 29
Query: 207 EEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTC 266
D P D +GHG+H A A GG G AP A++ K
Sbjct: 30 --DDDNENGPTDPDDGNGHGTHVAGIIAASANN---------GGGVGVAPGAKLIPVKVL 78
Query: 267 WDSG-CYDVDLLAAFDDAIRD-GVHILSLSLG-PEAPQGDYFSDAISIGSFHATSR-GIL 322
G D+ AA D A D G +++LSLG P +P S+AI +A ++ G+L
Sbjct: 79 DGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAID----YALAKLGVL 134
Query: 323 VVASAGNEGNEGSVTNLAP--WMFTIAASSTDRD 354
VVA+AGN+G +G P IA + DRD
Sbjct: 135 VVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRD 168
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 2e-17
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 492 TVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMA 551
TV +A FS+ G KPD+ APG NI+++ ++ SGTSMA
Sbjct: 167 TVGAVTENGTIADFSNYGGPVDGI---KPDIVAPGGNILSSGPGG-DLGGYDSHSGTSMA 222
Query: 552 CPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFL 611
P V G A L+ + +PS +P +++ ++TTAT L G +G G L
Sbjct: 223 APLVAGAAALLLSANPSLTPETLRALLVTTATDLGSM------------GLDRSFGYGLL 270
Query: 612 NPRKVL 617
N K +
Sbjct: 271 NLGKAV 276
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 3e-17
Identities = 56/215 (26%), Positives = 82/215 (38%), Gaps = 45/215 (20%)
Query: 147 IIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEA 206
+ V IDTGI P G P KV G Y +
Sbjct: 4 VKVAVIDTGIDYTHPDLGGPGFPND---------------------KVKGG--YDFVDDD 40
Query: 207 EEDIVETVSFR-----SPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIA 261
+ + S D++GHG+H A AG V +G+ AP A +
Sbjct: 41 YDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAGNGVNVGTIKGV--------APKADLY 92
Query: 262 VYKTCWDSG-CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQ-GDYFSDAISIGSFHATSR 319
YK G ++AA + A+ DG+ +++LSLG D + AI+ +A
Sbjct: 93 AYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNGPDDPDAIAIN----NAVKA 148
Query: 320 GILVVASAGNEGNEGSVTN---LAPWMFTIAASST 351
G++VVA+AGN G AP T+ AS+
Sbjct: 149 GVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTV 183
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 4e-17
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 38 VYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQA 97
Y+V G V+ H A E A AS +YSYKHGF GFAAKLT+++A
Sbjct: 1 TYIVKFKD--GVSKAAVFSSHKSWHASSKE---EAAGASILYSYKHGFNGFAAKLTEEEA 55
Query: 98 SQIAQMPGVVSVFPNMKRRLH 118
++ + P V V P+ LH
Sbjct: 56 EKLRKHPDVEYVEPDQVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 6e-17
Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 489 PAKTVLGSEPAPRVAAFSSKG---------PNALNPEILKPDVTAPGLNIIAAWSPAVGK 539
A +V + A FSS G P++ E KPDV APG+++ +A A G
Sbjct: 151 AALSVGAVDRDDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSARQGANGD 210
Query: 540 MQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTA 582
Q+ LSGTSMA PHV G+A L+ A HP SP IK A+ TA
Sbjct: 211 GQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETA 253
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 6e-17
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 496 SEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKM-----QFNILSGTSM 550
++ FSS+GP +KPDV APG NI++ SP + +SGTSM
Sbjct: 174 GPHDDGISYFSSRGPTGDG--RIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEMSGTSM 231
Query: 551 ACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583
A PHV+G L+ +P +P +K + TAT
Sbjct: 232 ATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 57/273 (20%), Positives = 84/273 (30%), Gaps = 66/273 (24%)
Query: 146 NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYE 205
+ VG ID+GI P F+ +V A YY++ +
Sbjct: 4 GVKVGVIDSGIDLSHPEFAG---------------------------RVSEASYYVAVND 36
Query: 206 AEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKT 265
A S D HG+H A A GG G AP A + +
Sbjct: 37 AGY--------ASNGDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARA 79
Query: 266 CWDSGCY--DVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIG----------S 313
+G D D+ AA+D GV I++ S G +
Sbjct: 80 SASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAAL 139
Query: 314 FHATSRGILVVASAGNEG--NEGSVTNLAPWMFT------IAASSTDRDFTSEIVLGDGA 365
A + G L V +AGN+G N P++ IA + D + T I +
Sbjct: 140 ARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNGT--IASYSYS 197
Query: 366 NFTGESLSLCKMNASARIISASEAYAGYFTPYQ 398
N G + + C I S +
Sbjct: 198 NRCGVAANWCLAAPGENIYSTDPDGGNGYGRVS 230
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 49/198 (24%), Positives = 72/198 (36%), Gaps = 50/198 (25%)
Query: 146 NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYE 205
I V +DTGI P F G+ F + R
Sbjct: 3 GITVAVLDTGIDAPHPDFD------------GRIIRFADFVNTVNGRT------------ 38
Query: 206 AEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKT 265
+P D +GHG+H A AG A + G +G AP A + K
Sbjct: 39 ------------TPYDDNGHGTHVAGIIAGSGRA-------SNGKYKGVAPGANLVGVKV 79
Query: 266 CWDSG-CYDVDLLAAFDDAI----RDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRG 320
DSG + D++A D + + + +++LSLG Y D + G
Sbjct: 80 LDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPS-YGEDPLCQAVERLWDAG 138
Query: 321 ILVVASAGNEG-NEGSVT 337
I+VV +AGN G G++T
Sbjct: 139 IVVVVAAGNSGPGPGTIT 156
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 2e-14
Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 505 FSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKA 564
FSS GP N LKPDV APG NI++ + + + +LSGTSMA P+V G A L+
Sbjct: 191 FSSWGP--TNELYLKPDVAAPGGNILSTY--PLAGGGYAVLSGTSMATPYVAGAAALLIQ 246
Query: 565 V-HPSWSPSAIKSAIMTTATAL---DKNHKPITVDPKGRRGNAFDYGSGFLNPRKVL 617
H SP+ ++ + +TA L D + P G+G +N K L
Sbjct: 247 ARHGKLSPAELRDLLASTAKPLPWSDGTSALPDLAP------VAQQGAGLVNAYKAL 297
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 5e-14
Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 30/167 (17%)
Query: 202 SGYEAE-----EDIVETVSF-----RSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGA 251
+G ++ +IV +F +D +GHG+H A A G
Sbjct: 9 TGIDSSHPDLKLNIVGGANFTGDDNNDYQDGNGHGTHVAGIIAAL---------DNGVGV 59
Query: 252 RGGAPMARIAVYKTCWDSGC-YDVDLLAAFDDAIRDGVHILSLSLGPEAPQGD-YFSDAI 309
G AP A + K D G D++A + AI +G+ I+++SLG P +AI
Sbjct: 60 VGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLG--GPSDSPALREAI 117
Query: 310 SIGSFHATSRGILVVASAGNEGNEGSVTNLAPWMF--TIAASSTDRD 354
A + GILVVA+AGN GN G + P + IA + D +
Sbjct: 118 KK----AYAAGILVVAAAGNSGN-GDSSYDYPAKYPSVIAVGAVDSN 159
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 7e-14
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 11/92 (11%)
Query: 492 TVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMA 551
+V ++ +A+FS+ G + D+ APG++I S + G + +SGTSMA
Sbjct: 179 SVAATDSNDALASFSNYGKKTV-------DLAAPGVDI---LSTSPGG-GYGYMSGTSMA 227
Query: 552 CPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583
PHV G A L+ +++P+ + + IK AI+++A
Sbjct: 228 TPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-13
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 12/79 (15%)
Query: 503 AAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLI 562
A+FSS GP ++ APG++I++ + P + LSGTSMA PHV G+A L+
Sbjct: 163 ASFSSTGPE--------VELAAPGVDILSTY-PNND---YAYLSGTSMATPHVAGVAALV 210
Query: 563 KAVHPSWSPSAIKSAIMTT 581
+ P + + ++ A+ T
Sbjct: 211 WSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 4e-13
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580
D+ APG++I++AW + LSGTSMA PHV G+A + ++ P SP+ +K+ ++
Sbjct: 194 DIFAPGVDILSAWIGSDT--ATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLN 251
Query: 581 TAT 583
AT
Sbjct: 252 LAT 254
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 6e-13
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 16/108 (14%)
Query: 490 AKTVLGSEPAPRVAAFSSKGPNA-LNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGT 548
A + + +++ FSS GP L+ LKPD+TAPG NI + V + +SGT
Sbjct: 222 ANKKVPNPNGGQMSGFSSWGPTPDLD---LKPDITAPGGNIYST----VNDNTYGYMSGT 274
Query: 549 SMACPHVTGIATLI----KAVHPSWSP----SAIKSAIMTTATALDKN 588
SMA PHV G + L+ K +P S +K+ +M TAT +
Sbjct: 275 SMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDS 322
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 1e-12
Identities = 23/63 (36%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 519 KPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAI 578
D+ APG +I+++ + G + LSGTSMA P V G+A L+ + +P +P+ +K+A+
Sbjct: 181 GVDIAAPGGDILSSPTTGGG--GYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAAL 238
Query: 579 MTT 581
++T
Sbjct: 239 LST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 2e-12
Identities = 54/200 (27%), Positives = 83/200 (41%), Gaps = 28/200 (14%)
Query: 148 IVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNA-----SSCNRKVIGARYYMS 202
+V ID+G+ P +F + AK+ + + A N KV A Y
Sbjct: 14 VVAVIDSGVDPTHDAFR--LDDDSKAKYSEE-FEAKKKKAGIGYGKYYNEKVPFAYNYAD 70
Query: 203 GYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAV 262
+DI++ D S HG H A AG N + G +G AP A++
Sbjct: 71 N---NDDILDED------DGSSHGMHVAGIVAG----NGD-EEDNGEGIKGVAPEAQLLA 116
Query: 263 YK---TCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSF-HATS 318
K YD A +DA++ G ++++SLG + G D + A
Sbjct: 117 MKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLG--STAGFVDLDDPEQQAIKRARE 174
Query: 319 RGILVVASAGNEGNEGSVTN 338
G++VV +AGN+GN GS T+
Sbjct: 175 AGVVVVVAAGNDGNSGSGTS 194
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 8e-12
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 502 VAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATL 561
+A FS +GP +KPD+ APG+NI+ A SP G + SGTS+A V G L
Sbjct: 359 IAIFSGRGPTRDG--RIKPDIAAPGVNILTA-SPGGG---YTTRSGTSVAAAIVAGACAL 412
Query: 562 I 562
+
Sbjct: 413 L 413
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-11
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
+A FSS+GP+ +KPD++APG+NI +A P G + SGTSMA PHV G+A
Sbjct: 186 VLADFSSRGPSTYGR--IKPDISAPGVNIRSAV-PGGG---YGSSSGTSMAAPHVAGVAA 239
Query: 561 LIKAVHPSWSPSAIKSAIMTTATAL 585
L+ + +PS + + T TA
Sbjct: 240 LLWSANPSLIGDVDATEAILTETAR 264
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 41/141 (29%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 219 PRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDV-DLL 277
P D +GHG+H A G G G A +I K G D +
Sbjct: 59 PMDDNGHGTHVAGIIGAV--------GNNGIGIAGVAWNVKIMPLKFLGADGSGTTSDAI 110
Query: 278 AAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSVT 337
A D A+ G I++ S G P DAI+ A GIL VA+AGN+G T
Sbjct: 111 KAIDYAVDMGAKIINNSWGGGGP-SQALRDAIA----RAIDAGILFVAAAGNDGTNNDKT 165
Query: 338 NLAPWMFT----IAASSTDRD 354
P + I+ ++TD +
Sbjct: 166 PTYPASYDLDNIISVAATDSN 186
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 9e-11
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 22/118 (18%)
Query: 483 AISKIFPAKTVLGSEPA---PRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGK 539
A + + G + VA+FSS+GP +KPD+ APG I++A S G
Sbjct: 179 ASNNPSVSNGEGGLGQSDNSDTVASFSSRGPTYDG--RIKPDLVAPGTGILSARSGGGGI 236
Query: 540 M-----QFNILSGTSMACPHVTGIATLI----------KAVHPSWSPSAIKSAIMTTA 582
+ SGTSMA P V G A L+ +P S + +K+ ++ +A
Sbjct: 237 GDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNP--SAALLKALLINSA 292
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 47/193 (24%), Positives = 71/193 (36%), Gaps = 42/193 (21%)
Query: 148 IVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAE 207
VG +DTGI P S G A+ GY+
Sbjct: 1 TVGVLDTGIDVNHPDLSGR-------------YIGLAYRN---------------GYDFV 32
Query: 208 EDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCW 267
+ D++GHG+H A A N G G AP A++ K
Sbjct: 33 D---NDPDPTPDDDNNGHGTHVAGIIA--AGDNNG------SGGVGVAPNAKLESVKVLP 81
Query: 268 DSGCYDVDLLAAFDDAIR--DGVHILSLSLGPEAPQGDYFSDAISIGSFH-ATSRGILVV 324
SG D +L A + A + + ++++SLGP +S AI + + A ++G L V
Sbjct: 82 GSGGTDSELAGAIEWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLFV 141
Query: 325 ASAGNEGNEGSVT 337
+AGN G+
Sbjct: 142 VAAGNGGDYADNN 154
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 3e-10
Identities = 44/151 (29%), Positives = 63/151 (41%), Gaps = 17/151 (11%)
Query: 206 AEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKT 265
A+ D +S D+ GHG+H + T G G A G G AP A + K
Sbjct: 26 ADFDENRRISATEVFDAGGHGTHVSGTIGG---------GGAKGVYIGVAPEADLLHGKV 76
Query: 266 CWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVA 325
D G ++A + A+ ++S+SLG D +A+ S G L V
Sbjct: 77 LDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYSEDPLEEAVEALS---NQTGALFVV 133
Query: 326 SAGNEGNEGSVTN--LAPWMFTIAASSTDRD 354
SAGNEG G+ + A ++ A DRD
Sbjct: 134 SAGNEG-HGTSGSPGSAYAALSVGA--VDRD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 3e-10
Identities = 45/143 (31%), Positives = 64/143 (44%), Gaps = 17/143 (11%)
Query: 219 PRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKT--CWDSGCYDVDL 276
P D GHG+H A A AN N A G G AP A + Y+ C S D +
Sbjct: 64 PMDCQGHGTHVAGIIA----ANPN-----AYGFTGVAPEATLGAYRVFGCSGSTTEDT-I 113
Query: 277 LAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSV 336
+AAF A DG +++ SLG + D ++ + G++V +AGN+G G
Sbjct: 114 IAAFLRAYEDGADVITASLGGP---SGWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPF 170
Query: 337 TNLAPWM--FTIAASSTDRDFTS 357
+P IA +S D F+S
Sbjct: 171 YASSPASGRGVIAVASVDSYFSS 193
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 41/143 (28%), Positives = 59/143 (41%), Gaps = 28/143 (19%)
Query: 200 YMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMAR 259
GY+ +E ET D GHG+ A A G +G AP
Sbjct: 31 PKGGYDGKE-AGETGDINDIVDKLGHGTAVAGQIAAN------------GNIKGVAPGIG 77
Query: 260 IAVYKTC-WDSGCYDVDLLAAFDDAIRDGVHILSLSLG--------PEAPQGDY--FSDA 308
I Y+ ++ A DA DGV +++LSLG E +Y + A
Sbjct: 78 IVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKA 137
Query: 309 ISIGSFHATSRGILVVASAGNEG 331
I+ +A S+G +VVA+AGN+G
Sbjct: 138 IN----YAKSKGSIVVAAAGNDG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 5e-10
Identities = 49/166 (29%), Positives = 69/166 (41%), Gaps = 37/166 (22%)
Query: 217 RSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDL 276
SS HG+H A T A V N N G+A G A ARI + G D+
Sbjct: 65 SGVSPSSWHGTHVAGTIAA--VTN-NGVGVA-----GVAWGARILPVRVLGKCGGTLSDI 116
Query: 277 LAAFDDAIR-------DGV-------HILSLSLGPEAPQGDYFSDAISIGSFHATSRGIL 322
+ D +R GV +++LSLG + +AI+ +RG+L
Sbjct: 117 V----DGMRWAAGLPVPGVPVNPNPAKVINLSLGGDGACSATMQNAIN----DVRARGVL 168
Query: 323 VVASAGNEGNEGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFT 368
VV +AGNEG+ SV A IA +TD G A+++
Sbjct: 169 VVVAAGNEGSSASVDAPANCRGVIAVGATDLR-------GQRASYS 207
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 56/229 (24%), Positives = 78/229 (34%), Gaps = 47/229 (20%)
Query: 146 NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYE 205
IVG DTG+ F D +RK++ RY
Sbjct: 8 GQIVGVADTGLDTNHCFFYDPNFNKTNLF----------------HRKIV--RYDSLS-- 47
Query: 206 AEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVY-- 263
+ D GHG+H A AG+ + + +G AP A++
Sbjct: 48 -----------DTKDDVDGHGTHVAGIIAGKGNDSS-----SISLYKGVAPKAKLYFQDI 91
Query: 264 --KTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGI 321
+ S D++ L F G I S S G Y A + F + I
Sbjct: 92 GDTSGNLSSPPDLNKL--FSPMYDAGARISSNSWGS-PVNNGYTLLARAYDQFAYNNPDI 148
Query: 322 LVVASAGNEGNEGSVTNLAPWM----FTIAASSTDRDFTSEIVLGDGAN 366
L V SAGN+GN+GS T +P T+ AS+ E LG N
Sbjct: 149 LFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGEGGLGQSDN 197
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580
DV+APG I++ + +SGTSMA PHV G+A L+ + P S S ++ A+
Sbjct: 200 DVSAPGGGILSTTP----DGDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKK 254
Query: 581 TA 582
TA
Sbjct: 255 TA 256
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 506 SSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAV 565
+ N + D+ APG++I++A + +SGTSMA PHV G+A L
Sbjct: 199 TGNFSAVANFSNGEVDIAAPGVDIVSAAPGG----GYRSMSGTSMATPHVAGVAAL---- 250
Query: 566 HPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSG 609
W+ + K+ A L + D G G
Sbjct: 251 ---WAEALPKAGGRALAALLQARLTAARTTQFAPGLDLPDRGVG 291
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 23/116 (19%)
Query: 503 AAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLI 562
++FS GP D+ APG NI++ SP SGTS A P V+G A L+
Sbjct: 191 SSFSLPGP--------WVDLAAPGENIVSL-SPGGD--GLATTSGTSFAAPFVSGTAALV 239
Query: 563 KAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLS 618
++ P + + ++ I TA P R G G G ++P L+
Sbjct: 240 RSRFPDLTAAQVRRRIEATA------DHP------ARGGRDDYVGYGVVDPVAALT 283
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 7e-09
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 9/87 (10%)
Query: 393 YFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVD---- 448
+ C L + +GK+++ R S K + AG G+I+ +
Sbjct: 13 VGNGDDAGGCCPEDLADSDVKGKIVLVRRGGCSFVEKA---ENAQRAGAAGVIIYNNDTG 69
Query: 449 --EPGKDVAIPFVIPSAVVGKKTGNKI 473
IP + + G +
Sbjct: 70 GLGGTVGDPSDVTIPVVFISYEDGEAL 96
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 502 VAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATL 561
A+FSS GP A LKPDV A G I +GTS +CP + G+
Sbjct: 186 KASFSSIGPTADGR--LKPDVMALGTGIYVINGDG----NITYANGTSFSCPLIAGLIAC 239
Query: 562 IKAVHPSWSPSAIKSAIMTTA 582
+ HP+W+ IK AI+ +A
Sbjct: 240 LWQAHPNWTNLQIKEAILKSA 260
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 19/134 (14%)
Query: 483 AISKIFPAKTVLGSEPAPRVAAFSSKGPNAL---NPEIL-KPDVTAPGLNIIAAWSPAVG 538
A+ + T SS P + PE+ KPDVTAP + + G
Sbjct: 150 AVGAVDYGNTPAFGSDPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAP--DGVNGTVDGDG 207
Query: 539 KMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKG 598
GTS A PH G+A L+ + +P +P+ I+ A+ +TA + +
Sbjct: 208 -DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEP---------- 256
Query: 599 RRGNAFDYGSGFLN 612
G GSG ++
Sbjct: 257 --GYDNASGSGLVD 268
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 6e-08
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580
DV G + + G + L GTSMA PHV G+A L+K+V+PS +P+ I+S + +
Sbjct: 225 DVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQS 284
Query: 581 T 581
T
Sbjct: 285 T 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 6e-08
Identities = 42/139 (30%), Positives = 57/139 (41%), Gaps = 33/139 (23%)
Query: 218 SPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCW-DSGCYDVDL 276
+D GHG+H A T GR V Y G A A IA+ D G D +
Sbjct: 41 DVQDGHGHGTHCAGTIFGRDVPGPRY---------GVARGAEIALIGKVLGDGGGGDGGI 91
Query: 277 LAAFDDAIRDGVHILSLSLG--------PEAPQGDYFSDAIS---------------IGS 313
LA A+ +G ++S+SLG P G FS A+ + +
Sbjct: 92 LAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAA 151
Query: 314 FHATSRGILVVASAGNEGN 332
A +RG L+VA+AGNE
Sbjct: 152 QAALARGTLIVAAAGNESQ 170
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 502 VAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATL 561
VA FS+ G + DV APG I + ++ SGTSMA P V+G+A L
Sbjct: 221 VANFSNYGKKNV-------DVFAPGERIYST----TPDNEYETDSGTSMAAPVVSGVAAL 269
Query: 562 IKAVHPSWSPSAIKSAIMTTAT 583
I + +P+ + +K I+ +
Sbjct: 270 IWSYYPNLTAKEVKQIILESGV 291
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 23/141 (16%)
Query: 219 PRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLA 278
D +GHG+H A A N G G AP A+I K +G + +A
Sbjct: 64 AMDDNGHGTHVAGIIAA--ATNNGT------GVAGVAPKAKIMPVKVLDANGSGSLADIA 115
Query: 279 AFDDAIR----DGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEG-NE 333
+ IR G +++LSLG G S A+ +A ++G++VVA+AGNEG +
Sbjct: 116 ---NGIRYAADKGAKVINLSLG-----GGLGSTALQEAINYAWNKGVVVVAAAGNEGVSS 167
Query: 334 GSVTNLAPWMFTIAASSTDRD 354
S P +AA TD+D
Sbjct: 168 VSYPAAYPGAIAVAA--TDQD 186
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 8e-07
Identities = 56/236 (23%), Positives = 73/236 (30%), Gaps = 90/236 (38%)
Query: 146 NIIVGFIDTGIWPESPSFSD--------------IGMPPAPAKWKGQCESGEAFNASSCN 191
++VG IDTGI P F + I P P +
Sbjct: 5 GVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP----------GGYYGGGEY 54
Query: 192 RKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGA 251
+ I S DIV + RD +GHG+H A AAG N +++G+
Sbjct: 55 TEEIINAALASDNPY--DIVPS------RDENGHGTHVAGIAAGNGDNNPDFKGV----- 101
Query: 252 RGGAPMARIAVYKT----------CWDSGCYD-VDLLAAFDDAIR--------------- 285
AP A + V K D Y D++ A
Sbjct: 102 ---APEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINISL 158
Query: 286 -------DGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEG 334
DG +L + DAIS RGI VV AGNEGN
Sbjct: 159 GTNFGSHDGTSLLERYI-----------DAIS------RLRGIAVVVGAGNEGNTQ 197
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 40/153 (26%), Positives = 59/153 (38%), Gaps = 29/153 (18%)
Query: 217 RSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMAR-IAVYKTCWDSGCYDVD 275
P D +GHG+HT T G G G AP AR IA + +G D D
Sbjct: 46 PLPYDDNGHGTHTMGTMVGNDG---------DGQQIGVAPGARWIAC-RALDRNGGNDAD 95
Query: 276 LLAA-------FDDAIRD-----GVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILV 323
L D A +++ S G + ++ A++ + GI
Sbjct: 96 YLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQPAVAA----WRAAGIFP 151
Query: 324 VASAGNEGNEGSVTNLAPWMF--TIAASSTDRD 354
V +AGN+G S N P + + A +TDR+
Sbjct: 152 VFAAGNDGPRCSTLNAPPANYPESFAVGATDRN 184
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.1 bits (121), Expect = 2e-06
Identities = 38/176 (21%), Positives = 62/176 (35%), Gaps = 14/176 (7%)
Query: 475 SYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNII-AAW 533
S A V + + VA+FS+ G D+ APG+NI+ +
Sbjct: 291 SGGDLAYPASYPAPNVIAVGALDLSDTVASFSNDGSPT------GVDIAAPGVNILSLSA 344
Query: 534 SPAVGKMQ--FNILSGTSMACPHVTGIATLIKAVHP-SWSPSAIKSAIMTTATALDKNHK 590
+ + LSGTSMA PHV+G+A L+ + +P +P+ +++ I+TTA +
Sbjct: 345 VNTLPGDGADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSGV 404
Query: 591 PITVDPK----GRRGNAFDYGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGYDEK 642
V G+ N + T L
Sbjct: 405 DNLVGGGLANLDAAATDVAGGTLPANGTGSSQGAVEAPGTLALLTPALGGTVPAAV 460
|
Length = 508 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 47/150 (31%), Positives = 62/150 (41%), Gaps = 27/150 (18%)
Query: 221 DSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARI--------AVYKTCWDSGCY 272
D GHG+ A AGR G G AP ARI A SG
Sbjct: 49 DCDGHGTLVAGIIAGRPGE--------GDGFSGVAPDARILPIRQTSAAFEPDEGTSGVG 100
Query: 273 DVDLLAAFDDAIR----DGVHILSLSLGPEAPQGDYFSDAISIGSFH-ATSRGILVVASA 327
D+ LA AIR G ++++SL P G D + A +G++VVA+A
Sbjct: 101 DLGTLAK---AIRRAADLGADVINISLVACLPAGSGADDPELGAAVRYALDKGVVVVAAA 157
Query: 328 GNEGNEGSVTNL---APWMFTIAASSTDRD 354
GN G +G T + A + +A S DRD
Sbjct: 158 GNTGGDGQKTTVVYPAWYPGVLAVGSIDRD 187
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 1e-05
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 524 APGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAI----KSAIM 579
APG NI + + K + L+GTSMA PHV IA+LI +++PS S + K +I+
Sbjct: 536 APGTNIYSTFP----KNSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIV 591
Query: 580 TTATALDK 587
+ +K
Sbjct: 592 QLPSLKNK 599
|
Length = 639 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 46.5 bits (109), Expect = 4e-05
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 8/138 (5%)
Query: 205 EAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYK 264
A D V+ D +GHG+H A T A N A GA+ V
Sbjct: 165 VAGGDFVDGDPEPPFLDDNGHGTHVAGTIAAVIFDNGAGVAGVAPGAKLLLV----KVLG 220
Query: 265 TCWDSGCYDVDLLAAFDDAIRDG--VHILSLSLGPEAPQGDYFSDAISIGSFHATSRGIL 322
+ SG D+ + A G +++LSLG + ++ + A + G++
Sbjct: 221 SGGGSGELS-DVAEGIEGAANLGGPADVINLSLGGSLSDSASPALGDALAAA-ANAGGVV 278
Query: 323 VVASAGNEGNEGSVTNLA 340
+VA+AGN+G+ S +LA
Sbjct: 279 IVAAAGNDGSNASGGDLA 296
|
Length = 508 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 514 NPEILKPDVT--APGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSP 571
V A G++IIA SG S A PHVTG+ L+ + P
Sbjct: 155 PKSFWYIYVEFSADGVDIIAPAPHGRYLTV----SGNSFAAPHVTGMVALLLSEKPDIDA 210
Query: 572 SAIKSAIMTTAT 583
+ +K + A
Sbjct: 211 NDLKRLLQRLAV 222
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 14/86 (16%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPG----LNIIAAWSPAVGKMQFNILSGTSMACPHVT 556
A+FS+ G D+ APG L+ + G + LSGTSMA PHV+
Sbjct: 197 NKASFSNYGRWV--------DIAAPGVGTILSTVPKLDGDGGGN-YEYLSGTSMAAPHVS 247
Query: 557 GIATLIKAVHPSW-SPSAIKSAIMTT 581
G+A L+ + P +P I+ + +
Sbjct: 248 GVAALVLSKFPDVFTPEQIRKLLEES 273
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 9e-05
Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 36/125 (28%)
Query: 218 SPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARI-AVYKT--CWDSGCYDV 274
D +GHG+H A T G+ G A A + AV K C SG
Sbjct: 58 PDSDCNGHGTHVAGTVGGKTY--------------GVAKKANLVAV-KVLDCNGSGTLS- 101
Query: 275 DLLAAFDDAIRDGVH-----ILSLSLGPEAPQGDY---FSDAISIGSFHATSRGILVVAS 326
++A + D + ++SLG G A++ A + G++VV +
Sbjct: 102 GIIAGLEWVANDATKRGKPAVANMSLG-----GGASTALDAAVA----AAVNAGVVVVVA 152
Query: 327 AGNEG 331
AGN
Sbjct: 153 AGNSN 157
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 522 VTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTT 581
+ APG NI + + +SGTS A PHV+G A L+ P + ++ ++TT
Sbjct: 208 LAAPGENIYSTDPDGGNG--YGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTT 265
Query: 582 AT 583
AT
Sbjct: 266 AT 267
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 400 SYCLESSLNSTKA--RGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDV--- 454
C + + + A +GK+++ R S K++ ++AG +I+ +
Sbjct: 31 VGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVK---NAQKAGAKAVIIYNNGDDPGPQM 87
Query: 455 ------AIPFVIPSAVVGKKTGNKILSYISHTSKAISKI 487
+ IP+ + G +LS + +
Sbjct: 88 GSVGLESTDPSIPTVGISYADGEALLSLLEAGKTVTVDL 126
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) glutamate carboxypeptidase II (GCPII), vi) yeast aminopeptidase Y, vii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, viii) lactocepin (a cell envelope-associated protease from Lactobacillus paracasei subsp. paracasei NCDO 151), ix) various subtilisin-like proteases such as melon Cucumisin, and x) human TfR (transferrin receptor) 1 and 2. Length = 126 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 22/126 (17%)
Query: 215 SFRSPR-DSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMAR---IAVYKTCWDSG 270
+ +S HG+H AS G+ ++ G AP+ R I ++ G
Sbjct: 41 AAACQDGGASAHGTHVASLIFGQPCSS----------VEGIAPLCRGLNIPIFAED-RRG 89
Query: 271 CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQG---DYFSDAISIGSFHATSRGILVVASA 327
C +DL A + A+ G HI+++S G G ++A+++ +L+VA+A
Sbjct: 90 CSQLDLARAINLALEQGAHIINISGGRLTQTGEADPILANAVAM----CQQNNVLIVAAA 145
Query: 328 GNEGNE 333
GNEG
Sbjct: 146 GNEGCA 151
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 10/134 (7%)
Query: 219 PRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARI-AVYKTCWDSGCYDVDLL 277
D GHG+ A AA V N G G AP A++ V Y D+
Sbjct: 36 TSDIDGHGTACAGVAAA--VGNNGL------GVAGVAPGAKLMPVRIADSLGYAYWSDIA 87
Query: 278 AAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSVT 337
A A +G ++S S G S + ++ +G +V+ +AGN G S
Sbjct: 88 QAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSG 147
Query: 338 NLA-PWMFTIAASS 350
A P + +AA+
Sbjct: 148 YAANPSVIAVAATD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 12/86 (13%)
Query: 506 SSKGPNALNPEILKPDVTAPGLNI--IAAWSPAVGKMQFNILSGTSMACPHVTG-IATLI 562
SS+GP A L ++APG I + W + Q +++GTSM+ P+ G IA L+
Sbjct: 333 SSRGPTADGA--LGVSISAPGGAIASVPNW--TLQGSQ--LMNGTSMSSPNACGGIALLL 386
Query: 563 ---KAVHPSWSPSAIKSAIMTTATAL 585
KA ++P +++ A+ TA L
Sbjct: 387 SGLKAEGIPYTPYSVRRALENTAKKL 412
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 8e-04
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Query: 492 TVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNI--IAAWSPAVGKM---QFNILS 546
V ++ A++S+ G D+ APG+ I + G + S
Sbjct: 156 AVAATDSNDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGGYGSFS 207
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTT 581
GTS A P G+A LI + +P+ +P+ ++ + +T
Sbjct: 208 GTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580
D APG+++ A G ++ +SGTS A P VT L+ P A T
Sbjct: 168 DFAAPGVDVWVA--APGGGYRY--VSGTSFAAPFVTAALALLLQASPLAPDDARARLAAT 223
Query: 581 TATALDKNHKPI 592
P+
Sbjct: 224 AKDLGPPGRDPV 235
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173788 cd04056, Peptidases_S53, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 255 APMARIAVYKTCWDSGCYDVDLLAAFDDAI---RDGVHILSLSLG-PEAPQGDYFSDAIS 310
AP A I +Y G L AF A+ + ++S+S G PE ++ +
Sbjct: 87 APGANITLYFA---PGTVTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVC 143
Query: 311 IGSFHATSRGILVVASAGNEGNEGSVTNLAPWMFTIA--ASS 350
A ++GI V+A++G+ G G + + F+++ ASS
Sbjct: 144 NLFAQAAAQGITVLAASGDSGAGGCGGDGSGTGFSVSFPASS 185
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 361 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 16/95 (16%)
Query: 501 RVAAFSSKGPNALNPEI------LKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPH 554
+A FSS+G E+ +KPD+ G + S G + LSGTS+A P
Sbjct: 165 NIARFSSRGMTTW--ELPGGYGRVKPDIVTYGSGVYG--SKLKGGCR--ALSGTSVASPV 218
Query: 555 VTGIATLIKAVHPS----WSPSAIKSAIMTTATAL 585
V G L+ + P +P+++K A++ +AT L
Sbjct: 219 VAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 14/93 (15%)
Query: 502 VAAFSSKGPNALNPEILKPDVTAPGLNIIA------AWSPAVGKMQFNILSGTSMACPHV 555
V ++SS+GP+ KPD+ A G A + G F++ GTSMA P
Sbjct: 221 VVSWSSRGPSIAG--DPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMT 278
Query: 556 TGIATLI------KAVHPSWSPSAIKSAIMTTA 582
G A L+ K + P +++ +M+TA
Sbjct: 279 AGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 768 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.98 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.93 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.91 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.73 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.16 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.09 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.85 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.83 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.69 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.64 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.62 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.6 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.6 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.59 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.5 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.49 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.47 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.46 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.43 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.42 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.41 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.41 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.41 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.41 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 98.3 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 97.95 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 97.08 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 97.0 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 96.64 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 96.31 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 95.7 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 95.57 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 95.52 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 94.49 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 94.32 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 94.16 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 93.68 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 92.0 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 91.35 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 90.25 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 81.53 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-52 Score=450.07 Aligned_cols=299 Identities=54% Similarity=0.937 Sum_probs=257.2
Q ss_pred eccCCCCCcccccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCcee
Q 004205 115 RRLHTTHSWDFMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKV 194 (768)
Q Consensus 115 ~~~~~~~s~~~~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki 194 (768)
+++++++++++++++......+|..+.+| +||+|||||||||++||+|.+....+.+..|++.|..+..++..+|++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 79 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAG-EGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKL 79 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCC-CccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeE
Confidence 46788999999999854444467779999 99999999999999999999988889999999999999988888899999
Q ss_pred EEEEeccCCccccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecC-CCCCH
Q 004205 195 IGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWD-SGCYD 273 (768)
Q Consensus 195 ~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~-~g~~~ 273 (768)
++.++|.++++.......+.+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++. ..+..
T Consensus 80 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~ 159 (307)
T cd04852 80 IGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFG 159 (307)
T ss_pred EEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccH
Confidence 99999988755432222334456778999999999999999987766666666677899999999999999987 44888
Q ss_pred HHHHHHHHHHHHcCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccCCCceEEEcccCCC
Q 004205 274 VDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTD 352 (768)
Q Consensus 274 ~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~ 352 (768)
+++++||++|++++++|||||||.... ....+.+..++..+.++|++||+||||+|+ ....++..||+++|||+
T Consensus 160 ~~~~~ai~~a~~~g~~Vin~S~G~~~~--~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~--- 234 (307)
T cd04852 160 SDILAAIDQAIADGVDVISYSIGGGSP--DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAS--- 234 (307)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCC--CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEec---
Confidence 999999999999999999999998751 345677888888999999999999999998 77888899999999962
Q ss_pred ccceeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHH
Q 004205 353 RDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRK 432 (768)
Q Consensus 353 ~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k 432 (768)
T Consensus 235 -------------------------------------------------------------------------------- 234 (307)
T cd04852 235 -------------------------------------------------------------------------------- 234 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCC
Q 004205 433 SMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNA 512 (768)
Q Consensus 433 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 512 (768)
.
T Consensus 235 ---------------------------------------------------------------~---------------- 235 (307)
T cd04852 235 ---------------------------------------------------------------T---------------- 235 (307)
T ss_pred ---------------------------------------------------------------c----------------
Confidence 0
Q ss_pred CCCCcccCceeeCCceEEEEecC------CCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 513 LNPEILKPDVTAPGLNIIAAWSP------AVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 513 ~~~~~~KPDI~APG~~I~Sa~~~------~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
+||||+|||.+|++++.. ......|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 236 -----~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 -----LKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred -----CccceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 467999999999999762 123456999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-51 Score=455.36 Aligned_cols=412 Identities=23% Similarity=0.239 Sum_probs=259.2
Q ss_pred CCCcceEEEEEeCCCCCCCCCCCC-CCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCC
Q 004205 142 KNQVNIIVGFIDTGIWPESPSFSD-IGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPR 220 (768)
Q Consensus 142 ~Gg~GV~VgVIDtGid~~Hp~f~~-~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 220 (768)
+| +||+|||||||||+.||+|++ ++.+++...|++....+.... ....+..+..+..+.......+.+.....
T Consensus 2 tG-~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~p~~~~~~~ 75 (455)
T cd07478 2 TG-KGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPG-----GYYGGGEYTEEIINAALASDNPYDIVPSR 75 (455)
T ss_pred CC-CceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCc-----cccCceEEeHHHHHHHHhcCCccccCcCC
Confidence 57 999999999999999999985 457899999999887654211 11222222222122221122244445567
Q ss_pred CCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-----------CCHHHHHHHHHHHHHc---
Q 004205 221 DSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-----------CYDVDLLAAFDDAIRD--- 286 (768)
Q Consensus 221 D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-----------~~~~~i~~ai~~a~~~--- 286 (768)
|..||||||||||||+..++ ..+.||||+|+|+++|++...+ +...++++||+|+++.
T Consensus 76 D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~ 147 (455)
T cd07478 76 DENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALE 147 (455)
T ss_pred CCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999987542 2358999999999999998664 4578999999999874
Q ss_pred --CCcEEEeccCCCCCCCCCchhHHHHHHHHhhcC-CcEEEEeccCCCC-CCCcccC-C----Cc--eEEEcccCCCccc
Q 004205 287 --GVHILSLSLGPEAPQGDYFSDAISIGSFHATSR-GILVVASAGNEGN-EGSVTNL-A----PW--MFTIAASSTDRDF 355 (768)
Q Consensus 287 --g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~-~~~~~~~-~----p~--vitVgAs~~~~~~ 355 (768)
.+.|||||||... +++...++++++++.+..+ |++||+||||+|. ..+..+. . .. -+.|+.- +..+
T Consensus 148 ~~~p~VInlSlG~~~-g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~--~~~~ 224 (455)
T cd07478 148 LNKPLVINISLGTNF-GSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEG--EKGF 224 (455)
T ss_pred hCCCeEEEEccCcCC-CCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCC--Ccce
Confidence 3789999999876 5667778899999888766 9999999999997 3333221 0 01 1233321 1111
Q ss_pred eeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecC---CCchhHHHH
Q 004205 356 TSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAE---SSTESKLRK 432 (768)
Q Consensus 356 ~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~---~g~~~~~~k 432 (768)
. +++. ..+|-.+.....+|.++....... ..-....+.......+|.+..+.. .|......+
T Consensus 225 ~--~eiW----------~~~~d~~~v~i~sP~Ge~~~~i~~---~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~ 289 (455)
T cd07478 225 N--LEIW----------GDFPDRFSVSIISPSGESSGRINP---GIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIR 289 (455)
T ss_pred E--EEEe----------cCCCCEEEEEEECCCCCccCccCc---CCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEE
Confidence 1 0000 111111111122222111000000 000000000000011111111000 111111111
Q ss_pred HHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCe------eecC-CCCCCccccc
Q 004205 433 SMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAK------TVLG-SEPAPRVAAF 505 (768)
Q Consensus 433 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~------~~~~-~~~~~~~a~f 505 (768)
..+ ...|.+-+.++........++.|+|.-.+..++..++ ..... .+++.+. ++.. +...+.++.|
T Consensus 290 ~~~-~~~GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~f~----~~~~~--~tit~Pa~~~~vitVga~~~~~~~~~~~ 362 (455)
T cd07478 290 FKN-IKPGIWKIRLTGVSITDGRFDAWLPSRGLLSENTRFL----EPDPY--TTLTIPGTARSVITVGAYNQNNNSIAIF 362 (455)
T ss_pred ccC-CCccceEEEEEeccCCCceEEEEecCcCcCCCCCEee----cCCCC--ceEecCCCCCCcEEEEEEeCCCCcccCc
Confidence 122 2347788888877766666778888765554443333 22222 2333322 2222 2334569999
Q ss_pred cCCCCCCCCCCcccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhC------CCCCHHHHHHHHH
Q 004205 506 SSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVH------PSWSPSAIKSAIM 579 (768)
Q Consensus 506 Ss~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------p~lsp~~ik~~L~ 579 (768)
|||||+. ++++||||+|||++|+++.+. +.|..++|||||||||||++|||+|.+ |.|++++||++|+
T Consensus 363 Ss~G~~~--~~~~kpdi~APG~~i~s~~~~----~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~ 436 (455)
T cd07478 363 SGRGPTR--DGRIKPDIAAPGVNILTASPG----GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLI 436 (455)
T ss_pred cCCCcCC--CCCcCceEEecCCCEEEeecC----CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHH
Confidence 9999998 899999999999999999884 569999999999999999999999975 5679999999999
Q ss_pred hhcccccCCCCCccCCCCCCCCCCCccccc
Q 004205 580 TTATALDKNHKPITVDPKGRRGNAFDYGSG 609 (768)
Q Consensus 580 ~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G 609 (768)
+||+++. ...+++++||||
T Consensus 437 ~tA~~~~-----------~~~~pn~~~GyG 455 (455)
T cd07478 437 RGARRRP-----------GDEYPNPEWGYG 455 (455)
T ss_pred HhCccCC-----------CCCCCCCCCCCC
Confidence 9999752 345678899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=450.79 Aligned_cols=300 Identities=20% Similarity=0.223 Sum_probs=215.9
Q ss_pred cccccccccCCCCcCCC--CCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccc---cccCCCCccccCCceeEEE
Q 004205 123 WDFMGLMGEESMEIPGF--STKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQ---CESGEAFNASSCNRKVIGA 197 (768)
Q Consensus 123 ~~~~g~~~~~~~~~~~~--~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~---~~~~~~f~~~~~n~ki~g~ 197 (768)
...|+++.++++++|+. +..| +||+|||||||||++||||.+.-... +....|. ...+.++ -..+ .+
T Consensus 293 ~~qWgLd~i~~~~aw~~~~~~~g-~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~GrdgiDdD~nG~-----vdd~-~G 364 (639)
T PTZ00262 293 NLQWGLDLTRLDETQELIEPHEV-NDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGRKGIDDDNNGN-----VDDE-YG 364 (639)
T ss_pred ccCcCcchhCchHHHHHhhccCC-CCcEEEEEccCCCCCChhhhhhcccc-cccccCccccccccCCc-----cccc-cc
Confidence 34478887788888873 4567 99999999999999999997542110 0001110 0000000 0011 12
Q ss_pred EeccCCccccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHH
Q 004205 198 RYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDL 276 (768)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i 276 (768)
++|.++ ..++.|.+||||||||||||...++. .+.||||+|+|+++|+++..+ +..+++
T Consensus 365 ~nfVd~------------~~~P~D~~GHGTHVAGIIAA~gnN~~--------Gi~GVAP~AkLi~vKVld~~G~G~~sdI 424 (639)
T PTZ00262 365 ANFVNN------------DGGPMDDNYHGTHVSGIISAIGNNNI--------GIVGVDKRSKLIICKALDSHKLGRLGDM 424 (639)
T ss_pred ccccCC------------CCCCCCCCCcchHHHHHHhccccCCC--------ceeeeecccccceEEEecCCCCccHHHH
Confidence 233222 13567899999999999999764332 248999999999999998766 788999
Q ss_pred HHHHHHHHHcCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCC--------------ccc---
Q 004205 277 LAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGS--------------VTN--- 338 (768)
Q Consensus 277 ~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~--------------~~~--- 338 (768)
++||+||++.|++|||||||... ....+..|+.+|.++|++||+||||+|. ... +|+
T Consensus 425 ~~AI~yA~~~GA~VINmSlG~~~-----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s 499 (639)
T PTZ00262 425 FKCFDYCISREAHMINGSFSFDE-----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILS 499 (639)
T ss_pred HHHHHHHHHCCCCEEEeccccCC-----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhh
Confidence 99999999999999999999763 3456788888999999999999999986 211 111
Q ss_pred -CCCceEEEcccCCCccceeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEE
Q 004205 339 -LAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVL 417 (768)
Q Consensus 339 -~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv 417 (768)
..+++|+|||+..+.
T Consensus 500 ~~~~nVIaVGAv~~d~---------------------------------------------------------------- 515 (639)
T PTZ00262 500 KKLRNVITVSNLIKDK---------------------------------------------------------------- 515 (639)
T ss_pred ccCCCEEEEeeccCCC----------------------------------------------------------------
Confidence 134566666532110
Q ss_pred EEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCC
Q 004205 418 VCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSE 497 (768)
Q Consensus 418 l~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~ 497 (768)
.
T Consensus 516 -------------------------------------------------------------------------------~ 516 (639)
T PTZ00262 516 -------------------------------------------------------------------------------N 516 (639)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 004205 498 PAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSA 577 (768)
Q Consensus 498 ~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~ 577 (768)
.....+.||+||.. ++||+|||++|+|+++. +.|..++|||||||||||+||||++++|+|++.||+++
T Consensus 517 ~~~s~s~~Snyg~~-------~VDIaAPG~dI~St~p~----g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~i 585 (639)
T PTZ00262 517 NQYSLSPNSFYSAK-------YCQLAAPGTNIYSTFPK----NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRI 585 (639)
T ss_pred CcccccccccCCCC-------cceEEeCCCCeeeccCC----CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence 01123456777632 24999999999999874 56999999999999999999999999999999999999
Q ss_pred HHhhcccccCCCCCccCCCCCCCCCCCccc-ccccCccccCCCCeee
Q 004205 578 IMTTATALDKNHKPITVDPKGRRGNAFDYG-SGFLNPRKVLSPGLIY 623 (768)
Q Consensus 578 L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G-~G~vn~~~Al~~~l~~ 623 (768)
|++||.++.. .+..+| .|+||+++|++.++-+
T Consensus 586 L~~TA~~l~~--------------~~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 586 LKESIVQLPS--------------LKNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHhCccCCC--------------CCCccccCcEEcHHHHHHHHHhc
Confidence 9999986421 111233 3899999999866544
|
|
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=411.35 Aligned_cols=270 Identities=21% Similarity=0.233 Sum_probs=202.6
Q ss_pred CCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCC
Q 004205 140 STKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSP 219 (768)
Q Consensus 140 ~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 219 (768)
+++| +||+|||||||||.+||++.+...+. +.+...+..+ ....
T Consensus 1 g~tG-~gv~vaviDtGvd~~~~~~~~~~~~~-----------------------l~~~~~~~~~------------~~~~ 44 (275)
T cd05562 1 GVDG-TGIKIGVISDGFDGLGDAADDQASGD-----------------------LPGNVNVLGD------------LDGG 44 (275)
T ss_pred CCCC-CceEEEEEeCCccccccccccccCCC-----------------------CCcceeeccc------------cCCC
Confidence 4678 99999999999999998653221111 1111111111 0234
Q ss_pred CCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHHcCCcEEEeccCCCC
Q 004205 220 RDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPEA 299 (768)
Q Consensus 220 ~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 299 (768)
.|..+||||||||| .||||+|+|+.+|+. ...+++++||+||+++|++|||||||...
T Consensus 45 ~d~~gHGT~vAgii------------------~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~ 102 (275)
T cd05562 45 SGGGDEGRAMLEII------------------HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLN 102 (275)
T ss_pred CCCCchHHHHHHHH------------------hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccC
Confidence 57889999999999 479999999999885 45788999999999999999999999864
Q ss_pred CCCCCchhHHHHHHHHhhcC-CcEEEEeccCCCC--CCCcccCCCceEEEcccCCCccceeeEEeCCCceEecccccccc
Q 004205 300 PQGDYFSDAISIGSFHATSR-GILVVASAGNEGN--EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCK 376 (768)
Q Consensus 300 ~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~--~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p 376 (768)
.+.+.+..+..+++++.++ |++||+||||+|. ....++..|++|+|||++.+.......
T Consensus 103 -~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s----------------- 164 (275)
T cd05562 103 -EPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS----------------- 164 (275)
T ss_pred -CCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc-----------------
Confidence 2222345677888888887 9999999999998 455678899999999976432100000
Q ss_pred cccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCc
Q 004205 377 MNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAI 456 (768)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~ 456 (768)
|. +.
T Consensus 165 -------------------------~~------------------------------------~~--------------- 168 (275)
T cd05562 165 -------------------------DP------------------------------------AP--------------- 168 (275)
T ss_pred -------------------------cc------------------------------------cc---------------
Confidence 00 00
Q ss_pred cceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCc-eEEEEecC
Q 004205 457 PFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGL-NIIAAWSP 535 (768)
Q Consensus 457 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~-~I~Sa~~~ 535 (768)
.......+.|+++||+. ++++||||+|||+ .+.+++..
T Consensus 169 ---------------------------------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~ 207 (275)
T cd05562 169 ---------------------------------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG 207 (275)
T ss_pred ---------------------------------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC
Confidence 00112345678889987 7889999999975 44555432
Q ss_pred CCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcccccccCccc
Q 004205 536 AVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRK 615 (768)
Q Consensus 536 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~vn~~~ 615 (768)
+.|..++|||||||||||++|||+|++|+|+++|||++|++||+++. .+.++..||||+||+.+
T Consensus 208 ----~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~------------~~g~d~~~G~G~vda~~ 271 (275)
T cd05562 208 ----DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMG------------EPGYDNASGSGLVDADR 271 (275)
T ss_pred ----CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC------------CCCCCCCcCcCcccHHH
Confidence 56999999999999999999999999999999999999999999753 13345689999999999
Q ss_pred cCC
Q 004205 616 VLS 618 (768)
Q Consensus 616 Al~ 618 (768)
|++
T Consensus 272 Av~ 274 (275)
T cd05562 272 AVA 274 (275)
T ss_pred Hhh
Confidence 986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-49 Score=408.74 Aligned_cols=241 Identities=25% Similarity=0.372 Sum_probs=197.6
Q ss_pred CCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccC
Q 004205 137 PGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSF 216 (768)
Q Consensus 137 ~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 216 (768)
|+++++| +||+|||||||||.+||+|.+.. ...+|.++
T Consensus 1 W~~g~tG-~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~~------------- 38 (255)
T cd07479 1 WQLGYTG-AGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTNE------------- 38 (255)
T ss_pred CCCCCCC-CCCEEEEEeCCCCCCCcchhccc----------------------------cccccCCC-------------
Confidence 8899999 99999999999999999996310 00111111
Q ss_pred CCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHcCCcEEEecc
Q 004205 217 RSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRDGVHILSLSL 295 (768)
Q Consensus 217 ~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~Sl 295 (768)
....|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ +..+.++++|+||++++++||||||
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~ 107 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSI 107 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeec
Confidence 2345778999999999998752 248999999999999998766 5667899999999999999999999
Q ss_pred CCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CC--CcccCCCceEEEcccCCCccceeeEEeCCCceEecccc
Q 004205 296 GPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EG--SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESL 372 (768)
Q Consensus 296 G~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~--~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~ 372 (768)
|... +...++..++.++.++|++||+||||+|+ .. ..++..+++|+|||..
T Consensus 108 G~~~----~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~---------------------- 161 (255)
T cd07479 108 GGPD----FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID---------------------- 161 (255)
T ss_pred cCCC----CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec----------------------
Confidence 9764 33456666777888999999999999997 33 3567788899999742
Q ss_pred cccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCC
Q 004205 373 SLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGK 452 (768)
Q Consensus 373 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~ 452 (768)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCC----CCCcccCceeeCCce
Q 004205 453 DVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNAL----NPEILKPDVTAPGLN 528 (768)
Q Consensus 453 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~~KPDI~APG~~ 528 (768)
..++++.|||+|++.. ..+++||||+|||.+
T Consensus 162 ---------------------------------------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~ 196 (255)
T cd07479 162 ---------------------------------------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSG 196 (255)
T ss_pred ---------------------------------------------cCCccccccCCCCCcccccCCCCCcCccEEecCCC
Confidence 1256789999996521 257889999999999
Q ss_pred EEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCC----CCCHHHHHHHHHhhcccc
Q 004205 529 IIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHP----SWSPSAIKSAIMTTATAL 585 (768)
Q Consensus 529 I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p----~lsp~~ik~~L~~TA~~~ 585 (768)
|+++... ..|..++|||||||||||++|||+|++| .++|.+||++|++||+++
T Consensus 197 i~~~~~~----~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 197 VYGSKLK----GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred eeccccC----CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 9988653 4588999999999999999999999998 789999999999999965
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=415.22 Aligned_cols=281 Identities=25% Similarity=0.270 Sum_probs=189.0
Q ss_pred CcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCC
Q 004205 144 QVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSS 223 (768)
Q Consensus 144 g~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~ 223 (768)
|+||+|||||||||++||||.+.... .|...++ + ...+....++..+ ....+.|.+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~~d----~-----~~~~~~g~d~~~~-----------~~~~~~D~~ 56 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLKFD----Y-----KAYLLPGMDKWGG-----------FYVIMYDFF 56 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----CcccccC----c-----CCCccCCcCCCCC-----------ccCCCCCcc
Confidence 49999999999999999999643210 0100000 0 0011111111111 012467899
Q ss_pred CCcchhhhccccccccccccccc-CCCcceeccCCCcEeeeeeecCCC-CCHHHHHH-------HHHHHH--HcCCcEEE
Q 004205 224 GHGSHTASTAAGRYVANMNYRGL-AAGGARGGAPMARIAVYKTCWDSG-CYDVDLLA-------AFDDAI--RDGVHILS 292 (768)
Q Consensus 224 gHGTHVAGi~ag~~~~~~~~~G~-~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~-------ai~~a~--~~g~dVIN 292 (768)
||||||||||||+.....+.+++ ....+.||||+|+|+.+|++...+ .....+.+ +++|.. +++++|||
T Consensus 57 gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN 136 (311)
T cd07497 57 SHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVIS 136 (311)
T ss_pred ccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEE
Confidence 99999999999986433222211 123469999999999999997543 32222333 344443 67899999
Q ss_pred eccCCCCCCCC---CchhHHHHHHHHh-hcCCcEEEEeccCCCC-C--CCcccCCCceEEEcccCCCccceeeEEeCCCc
Q 004205 293 LSLGPEAPQGD---YFSDAISIGSFHA-TSRGILVVASAGNEGN-E--GSVTNLAPWMFTIAASSTDRDFTSEIVLGDGA 365 (768)
Q Consensus 293 ~SlG~~~~~~~---~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~-~--~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~ 365 (768)
||||....... ...+..+..++.+ .++|+++|+||||+|+ . ...|+.++++|+|||++.....+..+
T Consensus 137 ~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~------ 210 (311)
T cd07497 137 NSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL------ 210 (311)
T ss_pred ecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh------
Confidence 99997641100 1112333333332 3899999999999998 3 34677889999999975321100000
Q ss_pred eEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEE
Q 004205 366 NFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMI 445 (768)
Q Consensus 366 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i 445 (768)
.
T Consensus 211 -----------~-------------------------------------------------------------------- 211 (311)
T cd07497 211 -----------F-------------------------------------------------------------------- 211 (311)
T ss_pred -----------h--------------------------------------------------------------------
Confidence 0
Q ss_pred EEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeC
Q 004205 446 LVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAP 525 (768)
Q Consensus 446 ~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 525 (768)
.......+.++.||||||+. ++++||||+||
T Consensus 212 -----------------------------------------------~~~~~~~~~~~~fSs~Gp~~--~g~~kPdv~Ap 242 (311)
T cd07497 212 -----------------------------------------------GYLPGGSGDVVSWSSRGPSI--AGDPKPDLAAI 242 (311)
T ss_pred -----------------------------------------------ccccCCCCCccccccCCCCc--ccCCCCceecc
Confidence 00012346789999999998 79999999999
Q ss_pred CceEEEEecCCC------CCcceEEeccccchhHHHHHHHHHHHHhCC------CCCHHHHHHHHHhhc
Q 004205 526 GLNIIAAWSPAV------GKMQFNILSGTSMACPHVTGIATLIKAVHP------SWSPSAIKSAIMTTA 582 (768)
Q Consensus 526 G~~I~Sa~~~~~------~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------~lsp~~ik~~L~~TA 582 (768)
|++|+++.+... +...|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 243 G~~i~s~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 243 GAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CcceEeecccCCCCcccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 999999876421 224699999999999999999999999876 689999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-48 Score=422.41 Aligned_cols=312 Identities=29% Similarity=0.373 Sum_probs=234.3
Q ss_pred CcCCCCC-CCCcceEEEEEeCCCCCCCCCCCCCCCCCCCC-----ccccccccCCCCccccCCceeEEEEeccCCccccc
Q 004205 135 EIPGFST-KNQVNIIVGFIDTGIWPESPSFSDIGMPPAPA-----KWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEE 208 (768)
Q Consensus 135 ~~~~~~~-~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~-----~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~ 208 (768)
.+|+++. +| +||+|||||||||++||+|.+....+... .+...+..+ ...+++.+++..++|.++...
T Consensus 1 ~~w~~~~~~G-~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-- 74 (346)
T cd07475 1 PLWDKGGYKG-EGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIG---YGKYYNEKVPFAYNYADNNDD-- 74 (346)
T ss_pred ChhhhcCCCC-CCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCC---CCcccccCCCeeEcCCCCCCc--
Confidence 3788888 88 99999999999999999998664333211 122222211 122356788888888765221
Q ss_pred cccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecC--C-CCCHHHHHHHHHHHHH
Q 004205 209 DIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWD--S-GCYDVDLLAAFDDAIR 285 (768)
Q Consensus 209 ~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~--~-g~~~~~i~~ai~~a~~ 285 (768)
.....|..+|||||||||+|...+... ...+.||||+|+|+.+|+++. . ......+++|++++++
T Consensus 75 -------~~~~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~ 142 (346)
T cd07475 75 -------ILDEDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVK 142 (346)
T ss_pred -------cCCCCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Confidence 112457889999999999998754211 234599999999999999973 3 3777889999999999
Q ss_pred cCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCC----------------cccCCCceEEEcc
Q 004205 286 DGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGS----------------VTNLAPWMFTIAA 348 (768)
Q Consensus 286 ~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~----------------~~~~~p~vitVgA 348 (768)
.|++|||||||... ........+..++.++.++|++||+||||+|. ... .++..+++|+||+
T Consensus 143 ~g~~Vin~S~G~~~-~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga 221 (346)
T cd07475 143 LGADVINMSLGSTA-GFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVAS 221 (346)
T ss_pred cCCCEEEECCCcCC-CCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEee
Confidence 99999999999886 22244567788888999999999999999986 211 1233455666665
Q ss_pred cCCCccceeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchh
Q 004205 349 SSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTES 428 (768)
Q Consensus 349 s~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~ 428 (768)
+...
T Consensus 222 ~~~~---------------------------------------------------------------------------- 225 (346)
T cd07475 222 ANKK---------------------------------------------------------------------------- 225 (346)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 3200
Q ss_pred HHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCC
Q 004205 429 KLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSK 508 (768)
Q Consensus 429 ~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~ 508 (768)
......+.++.||+|
T Consensus 226 -----------------------------------------------------------------~~~~~~~~~~~~S~~ 240 (346)
T cd07475 226 -----------------------------------------------------------------VPNPNGGQMSGFSSW 240 (346)
T ss_pred -----------------------------------------------------------------cCCCCCCccCCCcCC
Confidence 002234678899999
Q ss_pred CCCCCCCCcccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHh----CCCCCHHH----HHHHHHh
Q 004205 509 GPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAV----HPSWSPSA----IKSAIMT 580 (768)
Q Consensus 509 Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~lsp~~----ik~~L~~ 580 (768)
||+. ++++||||+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++
T Consensus 241 G~~~--~~~~~pdi~apG~~i~s~~~~----~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ 314 (346)
T cd07475 241 GPTP--DLDLKPDITAPGGNIYSTVND----NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMN 314 (346)
T ss_pred CCCc--ccCcCCeEEeCCCCeEEecCC----CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 9998 799999999999999999763 56999999999999999999999998 79999877 7889999
Q ss_pred hcccccCCCCCccCCCCCCCCCCCcccccccCccccCC
Q 004205 581 TATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLS 618 (768)
Q Consensus 581 TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~vn~~~Al~ 618 (768)
||.+.. ........+.+.++|+|+||+.+|++
T Consensus 315 ta~~~~------~~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 315 TATPPL------DSEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred cCCccc------ccCCCCccCCccccCcchhcHHHhhC
Confidence 998421 11113556778899999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-47 Score=407.30 Aligned_cols=293 Identities=28% Similarity=0.383 Sum_probs=228.7
Q ss_pred CCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccc
Q 004205 133 SMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVE 212 (768)
Q Consensus 133 ~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~ 212 (768)
.+++|+.+++| +||+|||||+|||++||+|.+.-.+ +.++.+.+++..+... ....
T Consensus 2 v~~~~~~g~tG-~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~--~~~~ 57 (312)
T cd07489 2 VDKLHAEGITG-KGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYD--GTNP 57 (312)
T ss_pred hhhHHhCCCCC-CCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCcccc--cccC
Confidence 35899999999 9999999999999999999753211 1123333333322100 0011
Q ss_pred cccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHcCCcEE
Q 004205 213 TVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRDGVHIL 291 (768)
Q Consensus 213 ~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVI 291 (768)
..+...+.|..||||||||||+|+..+ . .+.||||+|+|+.+|++...+ ...+.++++|++|++++++||
T Consensus 58 ~~~~~~~~d~~gHGT~vAgiia~~~~~----~-----~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iI 128 (312)
T cd07489 58 PVPDDDPMDCQGHGTHVAGIIAANPNA----Y-----GFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVI 128 (312)
T ss_pred CCCCCCCCCCCCcHHHHHHHHhcCCCC----C-----ceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 222345667899999999999998743 2 348999999999999998655 667789999999999999999
Q ss_pred EeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-C---CCcccCCCceEEEcccCCCccceeeEEeCCCceE
Q 004205 292 SLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-E---GSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANF 367 (768)
Q Consensus 292 N~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~---~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~ 367 (768)
|||||... . +..+.+..++.++.++|+++|+||||+|. . ...++..+++|+||+.+
T Consensus 129 n~S~g~~~-~--~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~----------------- 188 (312)
T cd07489 129 TASLGGPS-G--WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD----------------- 188 (312)
T ss_pred EeCCCcCC-C--CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-----------------
Confidence 99999874 2 34467777888889999999999999987 2 23456677888888521
Q ss_pred ecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEE
Q 004205 368 TGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILV 447 (768)
Q Consensus 368 ~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~ 447 (768)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCc
Q 004205 448 DEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGL 527 (768)
Q Consensus 448 n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~ 527 (768)
+.||+|||+. +...||||+|||+
T Consensus 189 -------------------------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~ 211 (312)
T cd07489 189 -------------------------------------------------------SYFSSWGPTN--ELYLKPDVAAPGG 211 (312)
T ss_pred -------------------------------------------------------CCccCCCCCC--CCCcCccEEcCCC
Confidence 5689999998 6889999999999
Q ss_pred eEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhC-CCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcc
Q 004205 528 NIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVH-PSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606 (768)
Q Consensus 528 ~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~ 606 (768)
+++++++. ..+.|..++|||||||+|||++||++|++ |.+++.+||++|++||.++...+..-. .....+..++
T Consensus 212 ~i~~~~~~--~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~---~~~~~~~~~~ 286 (312)
T cd07489 212 NILSTYPL--AGGGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSA---LPDLAPVAQQ 286 (312)
T ss_pred CEEEeeeC--CCCceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCcc---ccCCCCHhhc
Confidence 99999884 22459999999999999999999999999 999999999999999998654321111 1124677899
Q ss_pred cccccCccccCCCC
Q 004205 607 GSGFLNPRKVLSPG 620 (768)
Q Consensus 607 G~G~vn~~~Al~~~ 620 (768)
|+|+||+.+|++..
T Consensus 287 G~G~vn~~~a~~~~ 300 (312)
T cd07489 287 GAGLVNAYKALYAT 300 (312)
T ss_pred CcceeeHHHHhcCC
Confidence 99999999999854
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=390.48 Aligned_cols=245 Identities=27% Similarity=0.348 Sum_probs=201.2
Q ss_pred cCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCcccccccccccc
Q 004205 136 IPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVS 215 (768)
Q Consensus 136 ~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 215 (768)
+|+.+++| +||+|||||+|||++||+|.+....+ ...+.. .
T Consensus 2 lw~~g~~g-~gV~VaViDsGid~~hp~l~~~~~~~--------------------------~~~~~~------------~ 42 (267)
T cd07476 2 LFAFGGGD-PRITIAILDGPVDRTHPCFRGANLTP--------------------------LFTYAA------------A 42 (267)
T ss_pred ceeccCCC-CCeEEEEeCCCcCCCChhhCCCcccc--------------------------ccCccc------------c
Confidence 79999999 99999999999999999997532111 000000 0
Q ss_pred CCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC--CCHHHHHHHHHHHHHcCCcEEEe
Q 004205 216 FRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG--CYDVDLLAAFDDAIRDGVHILSL 293 (768)
Q Consensus 216 ~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~ 293 (768)
.....|..+|||||||||+|+... .+.||||+|+|+.+|++...+ ++..++++||+||+++|++||||
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~ 112 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINI 112 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 123456789999999999987521 248999999999999997654 44688999999999999999999
Q ss_pred ccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeEEeCCCceEecccc
Q 004205 294 SLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESL 372 (768)
Q Consensus 294 SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~ 372 (768)
|||... ........+..+++.+.++|++||+||||+|. ....|+..+++|+|||++.
T Consensus 113 S~G~~~-~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------- 170 (267)
T cd07476 113 SGGRLT-QTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD--------------------- 170 (267)
T ss_pred cCCcCC-CCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC---------------------
Confidence 999764 22234567888888999999999999999998 7778888999999997431
Q ss_pred cccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCC
Q 004205 373 SLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGK 452 (768)
Q Consensus 373 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~ 452 (768)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEE
Q 004205 453 DVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAA 532 (768)
Q Consensus 453 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa 532 (768)
.+.++.||+||+.. .||||+|||.+|+++
T Consensus 171 ----------------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~ 199 (267)
T cd07476 171 ----------------------------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGA 199 (267)
T ss_pred ----------------------------------------------CCCeeeecCCCCCC-----CCceEEecCCCceee
Confidence 13467899999864 388999999999999
Q ss_pred ecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCC----CCHHHHHHHHHhhccccc
Q 004205 533 WSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPS----WSPSAIKSAIMTTATALD 586 (768)
Q Consensus 533 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~----lsp~~ik~~L~~TA~~~~ 586 (768)
.+. +.|..++|||||||||||++|||+|++|. ++|++||++|++||+++.
T Consensus 200 ~~~----~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~ 253 (267)
T cd07476 200 ALG----GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCD 253 (267)
T ss_pred cCC----CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCC
Confidence 874 56999999999999999999999999887 899999999999999874
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=392.98 Aligned_cols=287 Identities=34% Similarity=0.484 Sum_probs=217.0
Q ss_pred CcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCcccccccc---ccccCCCCC
Q 004205 144 QVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIV---ETVSFRSPR 220 (768)
Q Consensus 144 g~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~---~~~~~~~~~ 220 (768)
|+||+|||||+|||++||+|.+..+ .+.++...++|..+........ .........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF---------------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC---------------------CCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 4999999999999999999974321 1345555555544311110000 000112245
Q ss_pred CCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHcCCcEEEeccCCCC
Q 004205 221 DSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRDGVHILSLSLGPEA 299 (768)
Q Consensus 221 D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 299 (768)
|..+|||||||+|+|...+. ..+.||||+|+|+.+|++...+ +...++++||+|+++++++|||||||...
T Consensus 60 ~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~ 131 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV 131 (295)
T ss_pred CCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 68999999999999876442 2348999999999999998444 78889999999999999999999999774
Q ss_pred CCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CC--CcccCCCceEEEcccCCCccceeeEEeCCCceEecccccccc
Q 004205 300 PQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EG--SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCK 376 (768)
Q Consensus 300 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~--~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p 376 (768)
. ...+.+..+++.+.++|+++|+||||+|. .. ..++..+++|+|||+....
T Consensus 132 ~---~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~----------------------- 185 (295)
T cd07474 132 N---GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD----------------------- 185 (295)
T ss_pred C---CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC-----------------------
Confidence 2 24567788888999999999999999987 33 3467889999999853110
Q ss_pred cccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCc
Q 004205 377 MNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAI 456 (768)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~ 456 (768)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCC-CCCCCCCcccCceeeCCceEEEEecC
Q 004205 457 PFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKG-PNALNPEILKPDVTAPGLNIIAAWSP 535 (768)
Q Consensus 457 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~G-p~~~~~~~~KPDI~APG~~I~Sa~~~ 535 (768)
.........|+++| +.. +..+||||+|||++|++++..
T Consensus 186 ---------------------------------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~ 224 (295)
T cd07474 186 ---------------------------------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPG 224 (295)
T ss_pred ---------------------------------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccC
Confidence 00112334455554 544 788999999999999999874
Q ss_pred CCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcccccccCccc
Q 004205 536 AVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRK 615 (768)
Q Consensus 536 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~vn~~~ 615 (768)
. ...|..++|||||||+|||++|||+|++|+|++++||++|++||++....+ ....++..+|+|+||+.+
T Consensus 225 ~--~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~--------~~~~~~~~~G~G~l~~~~ 294 (295)
T cd07474 225 S--GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSD--------GVVYPVSRQGAGRVDALR 294 (295)
T ss_pred C--CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCC--------CCcCChhccCcceecccc
Confidence 2 346999999999999999999999999999999999999999999764322 222356799999999988
Q ss_pred c
Q 004205 616 V 616 (768)
Q Consensus 616 A 616 (768)
|
T Consensus 295 A 295 (295)
T cd07474 295 A 295 (295)
T ss_pred C
Confidence 7
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=392.97 Aligned_cols=267 Identities=25% Similarity=0.325 Sum_probs=191.9
Q ss_pred cceEEEEEeCCCCCCCCCCCCCCCC-CCCCccccccccCCCCccccCCceeEEEEeccCCcccc-----------ccccc
Q 004205 145 VNIIVGFIDTGIWPESPSFSDIGMP-PAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAE-----------EDIVE 212 (768)
Q Consensus 145 ~GV~VgVIDtGid~~Hp~f~~~~~~-~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~-----------~~~~~ 212 (768)
++|+|||||||||++||+|++..+. +.....++..+.+.+|. +++.| ++|...+... ...+.
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~-----dd~~g-~~f~~~~~~~~~~~~~~~~~~~~~~g 74 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYI-----DDVNG-WNFLGQYDPRRIVGDDPYDLTEKGYG 74 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCcc-----ccccC-eeccCCcccccccccCcccccccccc
Confidence 6899999999999999999865321 11112233333333332 12233 3333211100 00001
Q ss_pred cccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHHcCCcEEE
Q 004205 213 TVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILS 292 (768)
Q Consensus 213 ~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN 292 (768)
..+...+.+..+|||||||||+|...++ .| +.||||+|+|+.+|++........++++||+||++.|++|||
T Consensus 75 ~~~~~~~~~~~gHGT~VAGiIaa~~~n~---~g-----~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN 146 (291)
T cd07483 75 NNDVNGPISDADHGTHVAGIIAAVRDNG---IG-----IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVIN 146 (291)
T ss_pred ccccCCCCCCCCcHHHHHHHHhCcCCCC---Cc-----eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEE
Confidence 1222345578999999999999976433 22 489999999999999875556778899999999999999999
Q ss_pred eccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CC---Ccc--------cCCCceEEEcccCCCccceeeEE
Q 004205 293 LSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EG---SVT--------NLAPWMFTIAASSTDRDFTSEIV 360 (768)
Q Consensus 293 ~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~---~~~--------~~~p~vitVgAs~~~~~~~~~~~ 360 (768)
||||... . .....+..++..+.++|+++|+||||+|. .. ..+ ...+++|+|||+...
T Consensus 147 ~S~G~~~-~--~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~-------- 215 (291)
T cd07483 147 MSFGKSF-S--PNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK-------- 215 (291)
T ss_pred eCCCCCC-C--CccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc--------
Confidence 9999753 1 23346777888899999999999999985 11 111 123456666653211
Q ss_pred eCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcC
Q 004205 361 LGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAG 440 (768)
Q Consensus 361 ~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~G 440 (768)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccC
Q 004205 441 GVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKP 520 (768)
Q Consensus 441 a~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KP 520 (768)
.....++.||++|+. +|
T Consensus 216 --------------------------------------------------------~~~~~~~~~Sn~G~~-------~v 232 (291)
T cd07483 216 --------------------------------------------------------YENNLVANFSNYGKK-------NV 232 (291)
T ss_pred --------------------------------------------------------CCcccccccCCCCCC-------ce
Confidence 011347889999984 35
Q ss_pred ceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 521 DI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
||+|||++|+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||+
T Consensus 233 di~APG~~i~s~~~~----~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 233 DVFAPGERIYSTTPD----NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred EEEeCCCCeEeccCc----CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999999999764 56999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=382.21 Aligned_cols=233 Identities=27% Similarity=0.398 Sum_probs=191.1
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCCc
Q 004205 147 IIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHG 226 (768)
Q Consensus 147 V~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gHG 226 (768)
|+|||||||||.+||+|.+.. +...++.. ....|..+||
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~--------------~~~~~~~~HG 39 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG--------------PGAPAPSAHG 39 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC--------------CCCCCCCCCH
Confidence 789999999999999996431 11111110 1245678999
Q ss_pred chhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC----CCHHHHHHHHHHHHHcCCcEEEeccCCCCCCC
Q 004205 227 SHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG----CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQG 302 (768)
Q Consensus 227 THVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g----~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~ 302 (768)
|||||||+|+.... .||||+|+|+.+|++...+ ++..++++||+||++.|++|||||||...
T Consensus 40 T~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~--- 105 (239)
T cd05561 40 TAVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP--- 105 (239)
T ss_pred HHHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC---
Confidence 99999999976321 6999999999999998542 66788999999999999999999999653
Q ss_pred CCchhHHHHHHHHhhcCCcEEEEeccCCCC--CCCcccCCCceEEEcccCCCccceeeEEeCCCceEecccccccccccc
Q 004205 303 DYFSDAISIGSFHATSRGILVVASAGNEGN--EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNAS 380 (768)
Q Consensus 303 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~--~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~ 380 (768)
...++.+++++.++|++||+||||+|. ....|+..+++|+|++++
T Consensus 106 ---~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~------------------------------ 152 (239)
T cd05561 106 ---NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVD------------------------------ 152 (239)
T ss_pred ---CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeec------------------------------
Confidence 246778888999999999999999997 456778888999998742
Q ss_pred hhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCcccee
Q 004205 381 ARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVI 460 (768)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 460 (768)
T Consensus 153 -------------------------------------------------------------------------------- 152 (239)
T cd05561 153 -------------------------------------------------------------------------------- 152 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCCCCc
Q 004205 461 PSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKM 540 (768)
Q Consensus 461 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~ 540 (768)
..+.++.||++|+.. ||+|||++|+++.+. +
T Consensus 153 -------------------------------------~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~----~ 183 (239)
T cd05561 153 -------------------------------------ARGRLYREANRGAHV--------DFAAPGVDVWVAAPG----G 183 (239)
T ss_pred -------------------------------------CCCCccccCCCCCcc--------eEEccccceecccCC----C
Confidence 124567899999987 999999999998653 5
Q ss_pred ceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCccccc
Q 004205 541 QFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSG 609 (768)
Q Consensus 541 ~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G 609 (768)
.|..++|||||||||||++||++|++| ++++|||++|++||+++.. +.++..||||
T Consensus 184 ~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~------------~~~d~~~G~G 239 (239)
T cd05561 184 GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGP------------PGRDPVFGYG 239 (239)
T ss_pred CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCC------------CCcCCCcCCC
Confidence 699999999999999999999999999 9999999999999997632 3345688987
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-46 Score=387.23 Aligned_cols=333 Identities=25% Similarity=0.293 Sum_probs=260.0
Q ss_pred cCCCCcEEEEEeCCCCCCCCchhhHhHHHHHHHHhcCccc-----cccc------------ceEEEec---ceeeEEEEE
Q 004205 32 ICFSAKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSME-----QAQA------------SHVYSYK---HGFRGFAAK 91 (768)
Q Consensus 32 ~~~~~~~yiV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~------------~~~~~y~---~~~~g~s~~ 91 (768)
.+..+.+|||.|++.. .+...+.|.+|++..+..+.. .... .+.+.|. .+|+|+.-.
T Consensus 76 ~~~~~~~YiV~f~~~~---~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ 152 (501)
T KOG1153|consen 76 EEALPSRYIVVFKPDA---SQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGY 152 (501)
T ss_pred hcccccceEEEeCCCc---cHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccc
Confidence 4567899999999554 223567788888877632111 1111 1333443 378899999
Q ss_pred eCHHHHHHHhcCCCeEEEEecceeccCC-----CCCcccccccccCCCC-----cC----CCCCCCCcceEEEEEeCCCC
Q 004205 92 LTDQQASQIAQMPGVVSVFPNMKRRLHT-----THSWDFMGLMGEESME-----IP----GFSTKNQVNIIVGFIDTGIW 157 (768)
Q Consensus 92 ~~~~~~~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~~~~~~-----~~----~~~~~Gg~GV~VgVIDtGid 157 (768)
++.+-+..+++.|-++.++++..++... .+....|||.++.-.+ -| .+-..| +||...|+||||+
T Consensus 153 ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG-~gvtaYv~DTGVn 231 (501)
T KOG1153|consen 153 FTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAG-KGVTAYVLDTGVN 231 (501)
T ss_pred cccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccC-CCeEEEEeccccc
Confidence 9999999999999999999998776543 2233334554432111 11 122358 9999999999999
Q ss_pred CCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCCcchhhhcccccc
Q 004205 158 PESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRY 237 (768)
Q Consensus 158 ~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~ 237 (768)
.+||||.++. ..|..+ ... ....|++||||||||+|+++.
T Consensus 232 i~H~dFegRa------------~wGa~i--------------~~~--------------~~~~D~nGHGTH~AG~I~sKt 271 (501)
T KOG1153|consen 232 IEHPDFEGRA------------IWGATI--------------PPK--------------DGDEDCNGHGTHVAGLIGSKT 271 (501)
T ss_pred ccccccccce------------eccccc--------------CCC--------------CcccccCCCcceeeeeeeccc
Confidence 9999997542 111111 100 235689999999999999987
Q ss_pred cccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHc---------CCcEEEeccCCCCCCCCCchh
Q 004205 238 VANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRD---------GVHILSLSLGPEAPQGDYFSD 307 (768)
Q Consensus 238 ~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~---------g~dVIN~SlG~~~~~~~~~~~ 307 (768)
.|||.+++|+++||++++| ++.+++++++|++++. +..|.|||+|+.. +-
T Consensus 272 --------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~------S~ 331 (501)
T KOG1153|consen 272 --------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFR------SA 331 (501)
T ss_pred --------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcc------cH
Confidence 7899999999999999988 8899999999999986 4799999999874 45
Q ss_pred HHHHHHHHhhcCCcEEEEeccCCCC--CCCcccCCCceEEEcccCCCccceeeEEeCCCceEecccccccccccchhccc
Q 004205 308 AISIGSFHATSRGILVVASAGNEGN--EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIIS 385 (768)
Q Consensus 308 ~~~~a~~~a~~~Gi~vV~AAGN~g~--~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~ 385 (768)
++..|+++|.+.||.+++||||+.. +.+.|+.+..+|||||++.
T Consensus 332 aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~---------------------------------- 377 (501)
T KOG1153|consen 332 ALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK---------------------------------- 377 (501)
T ss_pred HHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc----------------------------------
Confidence 7899999999999999999999998 8999999999999998642
Q ss_pred cccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEe
Q 004205 386 ASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVV 465 (768)
Q Consensus 386 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i 465 (768)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCCCCcceEEe
Q 004205 466 GKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNIL 545 (768)
Q Consensus 466 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~ 545 (768)
.+.++.|||||+|+ ||.|||.+|+|+|.. ..+...++
T Consensus 378 ---------------------------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iG--s~~at~il 414 (501)
T KOG1153|consen 378 ---------------------------------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIG--SNNATAIL 414 (501)
T ss_pred ---------------------------------ccchhhhcCcccee--------eeecCchhhhhhhhc--Cccchhee
Confidence 26789999999999 999999999999985 33568899
Q ss_pred ccccchhHHHHHHHHHHHHhCCC---------CCHHHHHHHHHhhcccc
Q 004205 546 SGTSMACPHVTGIATLIKAVHPS---------WSPSAIKSAIMTTATAL 585 (768)
Q Consensus 546 sGTSmAaP~VAG~aALl~q~~p~---------lsp~~ik~~L~~TA~~~ 585 (768)
||||||+|||||++|.+++.+|. .||.++|..+..-..+.
T Consensus 415 SGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~~d 463 (501)
T KOG1153|consen 415 SGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKTQD 463 (501)
T ss_pred ecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccccc
Confidence 99999999999999999998873 38888888887766543
|
|
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=379.89 Aligned_cols=246 Identities=29% Similarity=0.352 Sum_probs=194.6
Q ss_pred CcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCC
Q 004205 144 QVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSS 223 (768)
Q Consensus 144 g~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~ 223 (768)
|+||+|||||+|||++||+|.+.- ++.... .+...+.+.+. ......+.|..
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~--------~~~~~~-----------~~~~~~~~~d~---------~~~~~~~~d~~ 52 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKY--------RGWGGG-----------SADHDYNWFDP---------VGNTPLPYDDN 52 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhcc--------cccCCC-----------CcccccccccC---------CCCCCCCCCCC
Confidence 499999999999999999997531 110000 00000001010 00113456788
Q ss_pred CCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHH------------cCCcEE
Q 004205 224 GHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIR------------DGVHIL 291 (768)
Q Consensus 224 gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~------------~g~dVI 291 (768)
+|||||||||+|.... +...||||+|+|+.+|+++..++...+++++++++++ .+++||
T Consensus 53 ~HGT~vagii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Ii 123 (264)
T cd07481 53 GHGTHTMGTMVGNDGD---------GQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVI 123 (264)
T ss_pred CchhhhhhheeecCCC---------CCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEE
Confidence 9999999999987532 2238999999999999998777888899999999975 789999
Q ss_pred EeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CC---CcccCCCceEEEcccCCCccceeeEEeCCCceE
Q 004205 292 SLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EG---SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANF 367 (768)
Q Consensus 292 N~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~---~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~ 367 (768)
|||||... .....+..++..+.++|++||+||||++. .. ..++..+++|+|||.+
T Consensus 124 n~S~G~~~----~~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~----------------- 182 (264)
T cd07481 124 NNSWGGPS----GDNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATD----------------- 182 (264)
T ss_pred EeCCCcCC----CCchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecC-----------------
Confidence 99999875 13455666777888999999999999987 22 3577888999999743
Q ss_pred ecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEE
Q 004205 368 TGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILV 447 (768)
Q Consensus 368 ~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~ 447 (768)
T Consensus 183 -------------------------------------------------------------------------------- 182 (264)
T cd07481 183 -------------------------------------------------------------------------------- 182 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCc
Q 004205 448 DEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGL 527 (768)
Q Consensus 448 n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~ 527 (768)
..+.++.||++||.. .+++||||+|||.
T Consensus 183 --------------------------------------------------~~~~~~~~S~~g~~~--~~~~~~dv~ApG~ 210 (264)
T cd07481 183 --------------------------------------------------RNDVLADFSSRGPST--YGRIKPDISAPGV 210 (264)
T ss_pred --------------------------------------------------CCCCCccccCCCCCC--CCCcCceEEECCC
Confidence 125678999999988 6899999999999
Q ss_pred eEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCC--CCHHHHHHHHHhhcc
Q 004205 528 NIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPS--WSPSAIKSAIMTTAT 583 (768)
Q Consensus 528 ~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~--lsp~~ik~~L~~TA~ 583 (768)
+|+++.+. +.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 211 ~i~s~~~~----~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 211 NIRSAVPG----GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred CeEEecCC----CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 99999874 56999999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=376.37 Aligned_cols=244 Identities=30% Similarity=0.360 Sum_probs=196.1
Q ss_pred ceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCC
Q 004205 146 NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGH 225 (768)
Q Consensus 146 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 225 (768)
||+|||||||||++||+|.... ..++.++.+.++|.++.. ....|..+|
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~--------------------~~~~~~i~~~~~~~~~~~-----------~~~~~~~~H 49 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH--------------------LFKNLRILGEYDFVDNSN-----------NTNYTDDDH 49 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc--------------------cccCCceeeeecCccCCC-----------CCCCCCCCc
Confidence 7999999999999999994211 012456777777765411 113578899
Q ss_pred cchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC---CCHHHHHHHHHHHHHcCCcEEEeccCCCCCCC
Q 004205 226 GSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG---CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQG 302 (768)
Q Consensus 226 GTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~ 302 (768)
||||||||+|+.. +.+.||||+|+|+.+|+..... .....+++|++||.+.|++|||||||......
T Consensus 50 GT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~ 119 (261)
T cd07493 50 GTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDN 119 (261)
T ss_pred hhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCC
Confidence 9999999999752 2358999999999999976432 34567899999999999999999999875211
Q ss_pred C----------CchhHHHHHHHHhhcCCcEEEEeccCCCC-C---CCcccCCCceEEEcccCCCccceeeEEeCCCceEe
Q 004205 303 D----------YFSDAISIGSFHATSRGILVVASAGNEGN-E---GSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFT 368 (768)
Q Consensus 303 ~----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~---~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~ 368 (768)
. .....+.++++.+.++|++||+||||+|. . ...|+..+++|+|||..
T Consensus 120 ~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~------------------ 181 (261)
T cd07493 120 PTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD------------------ 181 (261)
T ss_pred cccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec------------------
Confidence 1 11245778888899999999999999997 2 34577788999999742
Q ss_pred cccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEc
Q 004205 369 GESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVD 448 (768)
Q Consensus 369 g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n 448 (768)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCce
Q 004205 449 EPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLN 528 (768)
Q Consensus 449 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~ 528 (768)
..+.++.||++||+. ++++||||+|||.+
T Consensus 182 -------------------------------------------------~~~~~~~~S~~G~~~--~~~~~pdi~a~G~~ 210 (261)
T cd07493 182 -------------------------------------------------ANGNKASFSSIGPTA--DGRLKPDVMALGTG 210 (261)
T ss_pred -------------------------------------------------cCCCCCccCCcCCCC--CCCcCCceEecCCC
Confidence 114578899999987 78999999999999
Q ss_pred EEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 529 IIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 529 I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
|++.... ..|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 211 ~~~~~~~----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 211 IYVINGD----GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred eEEEcCC----CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9986442 56999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=383.29 Aligned_cols=218 Identities=24% Similarity=0.296 Sum_probs=164.9
Q ss_pred CCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC---CCHHHHHHHHHHHHHcCCcEEEeccC
Q 004205 220 RDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG---CYDVDLLAAFDDAIRDGVHILSLSLG 296 (768)
Q Consensus 220 ~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIN~SlG 296 (768)
.|+.+|||||||||||+..++ ..+.||||+|+|+.+|+++... +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 478899999999999986432 2358999999999999987532 23467999999999999999999999
Q ss_pred CCCCCCCCchhHHHHHHHH-hhcCCcEEEEeccCCCC-CCC--ccc-CCCceEEEcccCCCccceeeEEeCCCceEeccc
Q 004205 297 PEAPQGDYFSDAISIGSFH-ATSRGILVVASAGNEGN-EGS--VTN-LAPWMFTIAASSTDRDFTSEIVLGDGANFTGES 371 (768)
Q Consensus 297 ~~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~-~~~--~~~-~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~ 371 (768)
.... .. ....+..++.+ +.++|+++|+||||+|+ ..+ .|+ ..+++|+|||+........
T Consensus 254 ~~~~-~~-~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~-------------- 317 (412)
T cd04857 254 EATH-WP-NSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAA-------------- 317 (412)
T ss_pred cCCC-Cc-cchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccc--------------
Confidence 8751 11 11233344443 34799999999999998 443 343 5789999998532210000
Q ss_pred ccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCC
Q 004205 372 LSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPG 451 (768)
Q Consensus 372 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~ 451 (768)
....
T Consensus 318 ----------------------------~y~~------------------------------------------------ 321 (412)
T cd04857 318 ----------------------------EYSL------------------------------------------------ 321 (412)
T ss_pred ----------------------------cccc------------------------------------------------
Confidence 0000
Q ss_pred CCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEE
Q 004205 452 KDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIA 531 (768)
Q Consensus 452 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~S 531 (768)
.....+.++.||||||+. ++++||||+|||+.|.|
T Consensus 322 -------------------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s 356 (412)
T cd04857 322 -------------------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIAS 356 (412)
T ss_pred -------------------------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCcEEE
Confidence 011235689999999998 89999999999999988
Q ss_pred EecCCCCCcceEEeccccchhHHHHHHHHHHHH----hCCCCCHHHHHHHHHhhccc
Q 004205 532 AWSPAVGKMQFNILSGTSMACPHVTGIATLIKA----VHPSWSPSAIKSAIMTTATA 584 (768)
Q Consensus 532 a~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lsp~~ik~~L~~TA~~ 584 (768)
+-.. ....|..|+|||||||||||++|||++ ++|+|+|.+||++|++||++
T Consensus 357 ~p~~--~~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~ 411 (412)
T cd04857 357 VPNW--TLQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKK 411 (412)
T ss_pred cccC--CCCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCcc
Confidence 6322 224589999999999999999999985 47899999999999999985
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=372.74 Aligned_cols=251 Identities=33% Similarity=0.474 Sum_probs=202.3
Q ss_pred CcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCC
Q 004205 144 QVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSS 223 (768)
Q Consensus 144 g~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~ 223 (768)
|+||+|+|||+|||++||+|.+.... ...+.... .......|..
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~---------------------------~~~~~~~~---------~~~~~~~d~~ 44 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR---------------------------FADFVNTV---------NGRTTPYDDN 44 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc---------------------------cccccccc---------cCCCCCCCCC
Confidence 49999999999999999999753210 01111100 0113456778
Q ss_pred CCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHc----CCcEEEeccCCC
Q 004205 224 GHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRD----GVHILSLSLGPE 298 (768)
Q Consensus 224 gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~dVIN~SlG~~ 298 (768)
+|||||||+|+|...+. ...+.||||+|+|+.+|+++..+ ....++++||+|+++. +++|||||||..
T Consensus 45 ~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~ 117 (264)
T cd07487 45 GHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAP 117 (264)
T ss_pred CchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCC
Confidence 99999999999986432 22359999999999999998766 6778999999999998 999999999988
Q ss_pred CCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CC--CcccCCCceEEEcccCCCccceeeEEeCCCceEeccccccc
Q 004205 299 APQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EG--SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLC 375 (768)
Q Consensus 299 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~--~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~ 375 (768)
. ......+.+..+++++.++|++||+||||++. .. ..++..+++|+|||+..+..
T Consensus 118 ~-~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~--------------------- 175 (264)
T cd07487 118 P-DPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP--------------------- 175 (264)
T ss_pred C-CCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC---------------------
Confidence 6 22346678888999999999999999999998 43 66788899999998543210
Q ss_pred ccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCC
Q 004205 376 KMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVA 455 (768)
Q Consensus 376 p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~ 455 (768)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecC
Q 004205 456 IPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSP 535 (768)
Q Consensus 456 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~ 535 (768)
....++.||++||+. ++++||||+|||++|+++.+.
T Consensus 176 ------------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~ 211 (264)
T cd07487 176 ------------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSP 211 (264)
T ss_pred ------------------------------------------CCccccccccCCCCC--CCCcCCCEEccccceEecccc
Confidence 113478899999998 899999999999999997542
Q ss_pred -----CCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 536 -----AVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 536 -----~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
....+.|..++|||||||+|||++||++|++|.+++++||++|++||+
T Consensus 212 ~~~~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 212 GGNPGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ccccCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 123456999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=374.66 Aligned_cols=260 Identities=29% Similarity=0.339 Sum_probs=199.0
Q ss_pred CcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccc
Q 004205 135 EIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETV 214 (768)
Q Consensus 135 ~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 214 (768)
.+|..+++| +||+|+|||||||++||+|.+..... +...+..++..... ...
T Consensus 1 ~aw~~g~~G-~gv~IaviDtGid~~Hp~~~~~~~~~-------------------------~~~~~~~~~~~~~~--~~~ 52 (273)
T cd07485 1 AAWEFGTGG-PGIIVAVVDTGVDGTHPDLQGNGDGD-------------------------GYDPAVNGYNFVPN--VGD 52 (273)
T ss_pred CccccccCC-CCcEEEEEeCCCCCCChhhccCCCCC-------------------------CcccccCCcccccc--cCC
Confidence 479999999 99999999999999999998651100 00000000000000 000
Q ss_pred cCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHcCCcEEEe
Q 004205 215 SFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRDGVHILSL 293 (768)
Q Consensus 215 ~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~ 293 (768)
......|..||||||||||+|+..+....-|+ ..+.|+||+|+|+.+|++...+ +....+++||+||++.|++||||
T Consensus 53 ~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i--~~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~ 130 (273)
T cd07485 53 IDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGI--AGAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQN 130 (273)
T ss_pred cCCCCCCCCCCHHHHHHHHHcccCCCcceecc--ccccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEe
Confidence 01234577899999999999976543222122 1346799999999999998754 77788999999999999999999
Q ss_pred ccCCCCCCCCCchhHHHHHHHHhhcC-------CcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeEEeCCCc
Q 004205 294 SLGPEAPQGDYFSDAISIGSFHATSR-------GILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGA 365 (768)
Q Consensus 294 SlG~~~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~ 365 (768)
|||.... ..+...+..+++.+.++ |++||+||||++. ....|+..+++|+||+++.
T Consensus 131 S~g~~~~--~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~-------------- 194 (273)
T cd07485 131 SWGGTGG--GIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT-------------- 194 (273)
T ss_pred cCCCCCc--cccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC--------------
Confidence 9998741 23455677777788777 9999999999998 5555888899999997431
Q ss_pred eEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEE
Q 004205 366 NFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMI 445 (768)
Q Consensus 366 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i 445 (768)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeC
Q 004205 446 LVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAP 525 (768)
Q Consensus 446 ~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 525 (768)
.+.++.||++|+.. ||+||
T Consensus 195 -----------------------------------------------------~~~~~~~S~~g~~~--------~i~ap 213 (273)
T cd07485 195 -----------------------------------------------------NDNKASFSNYGRWV--------DIAAP 213 (273)
T ss_pred -----------------------------------------------------CCCcCccccCCCce--------EEEeC
Confidence 14567899999987 99999
Q ss_pred Cc-eEEEEecCC--CCCcceEEeccccchhHHHHHHHHHHHHhCCC-CCHHHHHHHHHhh
Q 004205 526 GL-NIIAAWSPA--VGKMQFNILSGTSMACPHVTGIATLIKAVHPS-WSPSAIKSAIMTT 581 (768)
Q Consensus 526 G~-~I~Sa~~~~--~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~-lsp~~ik~~L~~T 581 (768)
|. .|+++++.. .....|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 214 G~~~i~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 214 GVGTILSTVPKLDGDGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred CCCccccccccccCCCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 99 999987742 12356999999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=369.37 Aligned_cols=231 Identities=30% Similarity=0.423 Sum_probs=195.0
Q ss_pred cCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCcccccccccccc
Q 004205 136 IPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVS 215 (768)
Q Consensus 136 ~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 215 (768)
+|..+++| +||+|||||+||+++||+|.+. +...+.+..+
T Consensus 17 ~~~~~~~G-~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------ 56 (255)
T cd04077 17 YYYDSSTG-SGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------ 56 (255)
T ss_pred eEecCCCC-CCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC------------
Confidence 67778999 9999999999999999999632 2222333222
Q ss_pred CCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHc-----CCc
Q 004205 216 FRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRD-----GVH 289 (768)
Q Consensus 216 ~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~-----g~d 289 (768)
....|..+|||||||||+++. .||||+|+|+.+|+++..+ ...+.++++++|+++. +++
T Consensus 57 -~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~ 121 (255)
T cd04077 57 -DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPA 121 (255)
T ss_pred -CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCe
Confidence 125578899999999999864 7999999999999998765 6778899999999987 489
Q ss_pred EEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC--CCCcccCCCceEEEcccCCCccceeeEEeCCCceE
Q 004205 290 ILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN--EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANF 367 (768)
Q Consensus 290 VIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~--~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~ 367 (768)
|||||||... ...+..+++.+.++|+++|+||||+|. ....|+..+++|+|||.+.
T Consensus 122 iin~S~g~~~------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~---------------- 179 (255)
T cd04077 122 VANMSLGGGA------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS---------------- 179 (255)
T ss_pred EEEeCCCCCC------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC----------------
Confidence 9999999873 456777788899999999999999998 4667888899999997532
Q ss_pred ecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEE
Q 004205 368 TGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILV 447 (768)
Q Consensus 368 ~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~ 447 (768)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCc
Q 004205 448 DEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGL 527 (768)
Q Consensus 448 n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~ 527 (768)
.+.++.||++||.. ||+|||.
T Consensus 180 ---------------------------------------------------~~~~~~~S~~g~~~--------~i~apG~ 200 (255)
T cd04077 180 ---------------------------------------------------DDARASFSNYGSCV--------DIFAPGV 200 (255)
T ss_pred ---------------------------------------------------CCCccCcccCCCCC--------cEEeCCC
Confidence 13478899999987 9999999
Q ss_pred eEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhccc
Q 004205 528 NIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATA 584 (768)
Q Consensus 528 ~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~ 584 (768)
+|.++... ..+.|..++|||||||+|||++|||+|++|+++++|||++|++||++
T Consensus 201 ~i~~~~~~--~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 201 DILSAWIG--SDTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred CeEecccC--CCCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 99998773 23579999999999999999999999999999999999999999973
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=377.69 Aligned_cols=254 Identities=26% Similarity=0.293 Sum_probs=185.6
Q ss_pred EEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCCcc
Q 004205 148 IVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGS 227 (768)
Q Consensus 148 ~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGT 227 (768)
+|||||||||.+||+|.+. +.....+... + ....|..||||
T Consensus 2 ~VaviDtGi~~~hp~l~~~---------------------------~~~~~~~~~~-----------~-~~~~d~~gHGT 42 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPA---------------------------LAEDDLDSDE-----------P-GWTADDLGHGT 42 (291)
T ss_pred EEEEecCCCCCCChhhhhh---------------------------hccccccccC-----------C-CCcCCCCCChH
Confidence 7999999999999999632 1111111111 0 11568899999
Q ss_pred hhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-----CCHHHHHHHHHHHHHcC---CcEEEeccCCCC
Q 004205 228 HTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-----CYDVDLLAAFDDAIRDG---VHILSLSLGPEA 299 (768)
Q Consensus 228 HVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-----~~~~~i~~ai~~a~~~g---~dVIN~SlG~~~ 299 (768)
||||||++....+ ....|+||+|+|+.+|++...+ ....++++||+|+++.+ ++|||||||...
T Consensus 43 ~vAgiia~~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~ 114 (291)
T cd04847 43 AVAGLALYGDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPL 114 (291)
T ss_pred HHHHHHHcCcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCC
Confidence 9999998755321 2348999999999999998763 45678999999999853 499999999875
Q ss_pred CCCCCchhHHHHHHHH-hhcCCcEEEEeccCCCC-CCC------------cccCCCceEEEcccCCCccceeeEEeCCCc
Q 004205 300 PQGDYFSDAISIGSFH-ATSRGILVVASAGNEGN-EGS------------VTNLAPWMFTIAASSTDRDFTSEIVLGDGA 365 (768)
Q Consensus 300 ~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~-~~~------------~~~~~p~vitVgAs~~~~~~~~~~~~~~~~ 365 (768)
.........+..++++ +.++|++||+||||++. ... .|+.++++|+|||.+.+........
T Consensus 115 ~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~----- 189 (291)
T cd04847 115 PIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRAR----- 189 (291)
T ss_pred CccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCccc-----
Confidence 2111112245555544 56899999999999998 321 3567789999998764421000000
Q ss_pred eEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEE
Q 004205 366 NFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMI 445 (768)
Q Consensus 366 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i 445 (768)
. |
T Consensus 190 ----------------------------------------------------------~---------------~----- 191 (291)
T cd04847 190 ----------------------------------------------------------Y---------------S----- 191 (291)
T ss_pred ----------------------------------------------------------c---------------c-----
Confidence 0 0
Q ss_pred EEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeC
Q 004205 446 LVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAP 525 (768)
Q Consensus 446 ~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 525 (768)
.......+.||++||.. ++.+||||+||
T Consensus 192 --------------------------------------------------~~~~~~~~~fs~~Gp~~--~~~~KPDl~ap 219 (291)
T cd04847 192 --------------------------------------------------AVGPAPAGATTSSGPGS--PGPIKPDVVAF 219 (291)
T ss_pred --------------------------------------------------ccccccCCCccccCCCC--CCCcCCcEEee
Confidence 00112233499999998 89999999999
Q ss_pred CceEEEEecC--------------CCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 526 GLNIIAAWSP--------------AVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 526 G~~I~Sa~~~--------------~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
|++|.++... ......|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 220 G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 220 GGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9999875431 123456999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-43 Score=367.16 Aligned_cols=248 Identities=30% Similarity=0.380 Sum_probs=206.6
Q ss_pred cccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCc
Q 004205 125 FMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGY 204 (768)
Q Consensus 125 ~~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~ 204 (768)
.|.++.+++..+|..+ +| +||+|||||+|||++||+|.. .++...+.+.++
T Consensus 10 ~w~~~~~~~~~~~~~~-~G-~gv~I~viDsGi~~~h~~l~~--------------------------~~~~~~~~~~~~- 60 (260)
T cd07484 10 QWNLDQIGAPKAWDIT-GG-SGVTVAVVDTGVDPTHPDLLK--------------------------VKFVLGYDFVDN- 60 (260)
T ss_pred CCCccccChHHHHhhc-CC-CCCEEEEEeCCCCCCCccccc--------------------------CCcccceeccCC-
Confidence 3566666788999988 78 999999999999999999842 223333333322
Q ss_pred cccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHH
Q 004205 205 EAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDA 283 (768)
Q Consensus 205 ~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a 283 (768)
...+.|..+|||||||||++...+. ..+.|+||+|+|+.+|+++..+ +...++++||+++
T Consensus 61 -----------~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a 121 (260)
T cd07484 61 -----------DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYA 121 (260)
T ss_pred -----------CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHH
Confidence 1235578899999999999875332 2348999999999999998755 7788999999999
Q ss_pred HHcCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeEEeC
Q 004205 284 IRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVLG 362 (768)
Q Consensus 284 ~~~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~~~~ 362 (768)
++.|++|||||||... ....+..++..+.++|++||+||||+|. ....|+..+++|+||+.+.
T Consensus 122 ~~~~~~iin~S~g~~~-----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~----------- 185 (260)
T cd07484 122 ADKGAKVINLSLGGGL-----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ----------- 185 (260)
T ss_pred HHCCCeEEEecCCCCC-----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC-----------
Confidence 9999999999999874 3456777788888999999999999999 7788899999999997431
Q ss_pred CCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCce
Q 004205 363 DGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGV 442 (768)
Q Consensus 363 ~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~ 442 (768)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCce
Q 004205 443 GMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDV 522 (768)
Q Consensus 443 g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 522 (768)
.+.++.||++|+.. |+
T Consensus 186 --------------------------------------------------------~~~~~~~s~~g~~~--------~~ 201 (260)
T cd07484 186 --------------------------------------------------------DDKRASFSNYGKWV--------DV 201 (260)
T ss_pred --------------------------------------------------------CCCcCCcCCCCCCc--------eE
Confidence 14567899999887 99
Q ss_pred eeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccc
Q 004205 523 TAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATAL 585 (768)
Q Consensus 523 ~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~ 585 (768)
+|||.+|+++.+. ..|..++|||||||+|||++||+++++| +++++||++|++||+++
T Consensus 202 ~apG~~i~~~~~~----~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 202 SAPGGGILSTTPD----GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred EeCCCCcEeecCC----CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 9999999998764 5699999999999999999999999999 99999999999999864
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=364.01 Aligned_cols=252 Identities=31% Similarity=0.391 Sum_probs=189.3
Q ss_pred ceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCC
Q 004205 146 NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGH 225 (768)
Q Consensus 146 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 225 (768)
||+|||||+|||++||+|.+. +.....|..+. ........|..+|
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~~--------~~~~~~~~d~~~H 45 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDENR--------RISATEVFDAGGH 45 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCCC--------CCCCCCCCCCCCc
Confidence 799999999999999999643 11122222110 0111345578899
Q ss_pred cchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHHcCCcEEEeccCCCCCCCCCc
Q 004205 226 GSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYF 305 (768)
Q Consensus 226 GTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~ 305 (768)
||||||||+|+..+ +...||||+|+|+.+|++...++..+++++||+|+++.+++|||||||.... .
T Consensus 46 GT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~----~ 112 (254)
T cd07490 46 GTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYY----S 112 (254)
T ss_pred HHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCC----C
Confidence 99999999998641 2348999999999999998777788999999999999999999999998751 1
Q ss_pred hhHHHHHHHHhhc-CCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeEEeCCCceEecccccccccccchhc
Q 004205 306 SDAISIGSFHATS-RGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARI 383 (768)
Q Consensus 306 ~~~~~~a~~~a~~-~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~ 383 (768)
.+.+..+++.+.+ +|++||+||||+|. ....++..+++|+|||++.+......
T Consensus 113 ~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~------------------------- 167 (254)
T cd07490 113 EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWF------------------------- 167 (254)
T ss_pred CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCc-------------------------
Confidence 4556666655554 69999999999998 77788889999999986533210000
Q ss_pred cccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEE
Q 004205 384 ISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSA 463 (768)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~ 463 (768)
T Consensus 168 -------------------------------------------------------------------------------- 167 (254)
T cd07490 168 -------------------------------------------------------------------------------- 167 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCCCCcceE
Q 004205 464 VVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFN 543 (768)
Q Consensus 464 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~ 543 (768)
..........++.+|.. .....||||+|||.+|+++.........|.
T Consensus 168 --------------------------------s~~g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~~~~~~~~ 214 (254)
T cd07490 168 --------------------------------SSFGSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGANGDGQYT 214 (254)
T ss_pred --------------------------------cCCcccccccccCCCCC-ccCCcCceEEeccCCeEccccCCCCCCCee
Confidence 00000112222334433 245689999999999999653323446799
Q ss_pred EeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 544 ILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 544 ~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
.++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 215 ~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 215 RLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred ecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=366.47 Aligned_cols=248 Identities=25% Similarity=0.292 Sum_probs=184.9
Q ss_pred cCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccc
Q 004205 131 EESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDI 210 (768)
Q Consensus 131 ~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~ 210 (768)
+++..+|+++.+| +||+|||||||||..|| |....+. +...+..+
T Consensus 8 l~~~~~~~~G~~G-~Gv~VaViDTGv~~~h~-~~~~~~~--------------------------~~~~~~~~------- 52 (298)
T cd07494 8 LNATRVHQRGITG-RGVRVAMVDTGFYAHPF-FESRGYQ--------------------------VRVVLAPG------- 52 (298)
T ss_pred cChhHHHhcCCCC-CCcEEEEEeCCCcCCch-hhcCCcc--------------------------ceeecCCC-------
Confidence 3466899999999 99999999999999998 6532210 00011110
Q ss_pred cccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHHcCCcE
Q 004205 211 VETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHI 290 (768)
Q Consensus 211 ~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~~g~dV 290 (768)
......|++||||||||++ .||||+|+|+.+|+++. ..+++++||+||++++++|
T Consensus 53 ----~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dV 107 (298)
T cd07494 53 ----ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDI 107 (298)
T ss_pred ----CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCE
Confidence 0123567889999999876 58999999999999853 5677999999999999999
Q ss_pred EEeccCCCCCCCC--------CchhHHHHHHHHhhcCCcEEEEeccCCCCCCCcccCCCceEEEcccCCCccceeeEEeC
Q 004205 291 LSLSLGPEAPQGD--------YFSDAISIGSFHATSRGILVVASAGNEGNEGSVTNLAPWMFTIAASSTDRDFTSEIVLG 362 (768)
Q Consensus 291 IN~SlG~~~~~~~--------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~ 362 (768)
||||||....... .....+..++++|.++|++||+||||++. .+|+..|++|+|||++.+..-
T Consensus 108 In~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~--~~Pa~~p~viaVga~~~~~~g------- 178 (298)
T cd07494 108 ISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW--SFPAQHPEVIAAGGVFVDEDG------- 178 (298)
T ss_pred EEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC--CcCCCCCCEEEEEeEeccCCC-------
Confidence 9999998641110 12346888888999999999999999985 568899999999986433210
Q ss_pred CCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCce
Q 004205 363 DGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGV 442 (768)
Q Consensus 363 ~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~ 442 (768)
T Consensus 179 -------------------------------------------------------------------------------- 178 (298)
T cd07494 179 -------------------------------------------------------------------------------- 178 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCcccccc--CCCCCCCCCCcccC
Q 004205 443 GMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFS--SKGPNALNPEILKP 520 (768)
Q Consensus 443 g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fS--s~Gp~~~~~~~~KP 520 (768)
.....++ ++.... .+++.||
T Consensus 179 ---------------------------------------------------------~~~~~~~~~~~~s~~-~~g~~~p 200 (298)
T cd07494 179 ---------------------------------------------------------ARRASSYASGFRSKI-YPGRQVP 200 (298)
T ss_pred ---------------------------------------------------------cccccccccCccccc-CCCCccC
Confidence 0000111 111111 2466777
Q ss_pred ce----------------eeCCceEEEEecC----CCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 004205 521 DV----------------TAPGLNIIAAWSP----AVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580 (768)
Q Consensus 521 DI----------------~APG~~I~Sa~~~----~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~ 580 (768)
|+ +|||..|.++... ...+..|..++|||||||||||++|||+|++|.|+++|||++|++
T Consensus 201 d~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ 280 (298)
T cd07494 201 DVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFPDGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNK 280 (298)
T ss_pred ccccccCcCCcccccccccCCCcceeccccCCCCCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 76 4799999765431 122356999999999999999999999999999999999999999
Q ss_pred hcccc
Q 004205 581 TATAL 585 (768)
Q Consensus 581 TA~~~ 585 (768)
||+++
T Consensus 281 ta~~~ 285 (298)
T cd07494 281 TARDV 285 (298)
T ss_pred hCccc
Confidence 99965
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=367.26 Aligned_cols=197 Identities=32% Similarity=0.426 Sum_probs=166.9
Q ss_pred CCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHH----------HcC
Q 004205 218 SPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAI----------RDG 287 (768)
Q Consensus 218 ~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~----------~~g 287 (768)
...+..+|||||||||+|...++ . .+.||||+|+|+.+|+++..+...+++++|++|++ .++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~---~-----~~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~ 137 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNG---V-----GVAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNP 137 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCC---C-----CceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCC
Confidence 34567899999999999987532 2 34899999999999999877778899999999998 457
Q ss_pred CcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-C-CCcccCCCceEEEcccCCCccceeeEEeCCCc
Q 004205 288 VHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-E-GSVTNLAPWMFTIAASSTDRDFTSEIVLGDGA 365 (768)
Q Consensus 288 ~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~-~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~ 365 (768)
++|||||||... .....+..++..+.++|++||+||||++. . ...|+..+++|+|||++.
T Consensus 138 ~~Iin~S~G~~~----~~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~-------------- 199 (285)
T cd07496 138 AKVINLSLGGDG----ACSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL-------------- 199 (285)
T ss_pred CeEEEeCCCCCC----CCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC--------------
Confidence 899999999875 11557778888999999999999999998 3 677888899999997431
Q ss_pred eEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEE
Q 004205 366 NFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMI 445 (768)
Q Consensus 366 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i 445 (768)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeC
Q 004205 446 LVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAP 525 (768)
Q Consensus 446 ~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 525 (768)
.+.++.||++|+.. ||+||
T Consensus 200 -----------------------------------------------------~~~~~~~S~~g~~v--------di~ap 218 (285)
T cd07496 200 -----------------------------------------------------RGQRASYSNYGPAV--------DVSAP 218 (285)
T ss_pred -----------------------------------------------------CCCcccccCCCCCC--------CEEeC
Confidence 24578899999987 99999
Q ss_pred CceEEEEecCC-----------CCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 004205 526 GLNIIAAWSPA-----------VGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTT 581 (768)
Q Consensus 526 G~~I~Sa~~~~-----------~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~T 581 (768)
|++|.++.... .....|..++|||||||+|||++||++|++|+|++++||++|++|
T Consensus 219 G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 219 GGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred CCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999886531 123468999999999999999999999999999999999999986
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-42 Score=354.60 Aligned_cols=234 Identities=27% Similarity=0.383 Sum_probs=187.5
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCCc
Q 004205 147 IIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHG 226 (768)
Q Consensus 147 V~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gHG 226 (768)
|+|||||+|||++||+|.+.. ++...+.+... .....|..+||
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~~------------~~~~~~~~~HG 43 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVSN------------NDPTSDIDGHG 43 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccCC------------CCCCCCCCCCH
Confidence 689999999999999997520 01111111111 01345788999
Q ss_pred chhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHcCCcEEEeccCCCCCCCCCc
Q 004205 227 SHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYF 305 (768)
Q Consensus 227 THVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~ 305 (768)
|||||||+|+..+. ..+.||||+|+|+.+|++...+ +...++.++++|+++.+++|||||||... .....
T Consensus 44 T~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~-~~~~~ 114 (242)
T cd07498 44 TACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSD-STESI 114 (242)
T ss_pred HHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCC-CCchH
Confidence 99999999976432 2348999999999999998664 67788999999999999999999999875 22234
Q ss_pred hhHHHHHHHHhhc-CCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeEEeCCCceEecccccccccccchhc
Q 004205 306 SDAISIGSFHATS-RGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARI 383 (768)
Q Consensus 306 ~~~~~~a~~~a~~-~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~ 383 (768)
...+..++..+.. +|+++|+||||+|. ....++..+++|+|||.+.
T Consensus 115 ~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~-------------------------------- 162 (242)
T cd07498 115 SSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS-------------------------------- 162 (242)
T ss_pred HHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC--------------------------------
Confidence 5677888888888 99999999999998 5557888999999997531
Q ss_pred cccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEE
Q 004205 384 ISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSA 463 (768)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~ 463 (768)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCC-----CC
Q 004205 464 VVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPA-----VG 538 (768)
Q Consensus 464 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~-----~~ 538 (768)
.+.++.||+|||.. |++|||+++.++.... ..
T Consensus 163 -----------------------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~~~~~ 199 (242)
T cd07498 163 -----------------------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYP 199 (242)
T ss_pred -----------------------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCccccccccCC
Confidence 14578899999987 9999999998874321 12
Q ss_pred CcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 004205 539 KMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTT 581 (768)
Q Consensus 539 ~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~T 581 (768)
...|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 200 ~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 200 GGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred CCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 3568999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=362.18 Aligned_cols=271 Identities=29% Similarity=0.343 Sum_probs=200.7
Q ss_pred CCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCC
Q 004205 139 FSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRS 218 (768)
Q Consensus 139 ~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 218 (768)
++++| +||+|||||||||++||+|.+... .+..| ..+++.....+.+ .
T Consensus 2 ~g~tG-~gv~VaviDtGi~~~hp~l~~~~~------------~~~~~----~~~~~~~~~~~~~---------------~ 49 (293)
T cd04842 2 LGLTG-KGQIVGVADTGLDTNHCFFYDPNF------------NKTNL----FHRKIVRYDSLSD---------------T 49 (293)
T ss_pred CCcCC-cCCEEEEEecCCCCCCCcccCCCc------------CcCcc----CcccEEEeeccCC---------------C
Confidence 57889 999999999999999999975421 01111 1334444333322 1
Q ss_pred CCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC--CCHHHHHHHHHHHHHcCCcEEEeccC
Q 004205 219 PRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG--CYDVDLLAAFDDAIRDGVHILSLSLG 296 (768)
Q Consensus 219 ~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~SlG 296 (768)
..|..+|||||||||+|+..+... ...+.||||+|+|+.+|++...+ ....++.++++++.+.+++|||||||
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G 124 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWG 124 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCC
Confidence 227899999999999998754321 11359999999999999998665 55677899999999999999999999
Q ss_pred CCCCCCCCchhHHHHHHHHhh--cCCcEEEEeccCCCC-C---CCcccCCCceEEEcccCCCccceeeEEeCCCceEecc
Q 004205 297 PEAPQGDYFSDAISIGSFHAT--SRGILVVASAGNEGN-E---GSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGE 370 (768)
Q Consensus 297 ~~~~~~~~~~~~~~~a~~~a~--~~Gi~vV~AAGN~g~-~---~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~ 370 (768)
..... .......+++++. .+|++||+||||++. . ...++..+++|+|||++......
T Consensus 125 ~~~~~---~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~-------------- 187 (293)
T cd04842 125 SPVNN---GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN-------------- 187 (293)
T ss_pred CCCcc---ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc--------------
Confidence 88521 1233344444433 389999999999998 3 36788899999999876442100
Q ss_pred cccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCC
Q 004205 371 SLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEP 450 (768)
Q Consensus 371 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~ 450 (768)
...|..
T Consensus 188 ----------------------------~~~~~~---------------------------------------------- 193 (293)
T cd04842 188 ----------------------------GEGGLG---------------------------------------------- 193 (293)
T ss_pred ----------------------------cccccc----------------------------------------------
Confidence 000000
Q ss_pred CCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEE
Q 004205 451 GKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNII 530 (768)
Q Consensus 451 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~ 530 (768)
.......++.||++||+. ++++||||+|||++|+
T Consensus 194 --------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~ 227 (293)
T cd04842 194 --------------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGIL 227 (293)
T ss_pred --------------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeE
Confidence 012336789999999987 7999999999999999
Q ss_pred EEecC-----CCCCcceEEeccccchhHHHHHHHHHHHHhC-----C---CCCHHHHHHHHHhhcc
Q 004205 531 AAWSP-----AVGKMQFNILSGTSMACPHVTGIATLIKAVH-----P---SWSPSAIKSAIMTTAT 583 (768)
Q Consensus 531 Sa~~~-----~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p---~lsp~~ik~~L~~TA~ 583 (768)
++... ......|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 228 SARSGGGGIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred eccCCCCCCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 99642 1233568999999999999999999999985 4 6667799999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=360.84 Aligned_cols=265 Identities=31% Similarity=0.406 Sum_probs=184.5
Q ss_pred CCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCC
Q 004205 138 GFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFR 217 (768)
Q Consensus 138 ~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 217 (768)
..+++| +||+|||||+|||.+||+|.+.. +....|.+. .
T Consensus 2 ~~~~tG-~gv~VaVlDsGv~~~hp~l~~~~---------------------------~~~~~~~~~-------------~ 40 (297)
T cd07480 2 TSPFTG-AGVRVAVLDTGIDLTHPAFAGRD---------------------------ITTKSFVGG-------------E 40 (297)
T ss_pred CCCCCC-CCCEEEEEcCCCCCCChhhcCCc---------------------------ccCcccCCC-------------C
Confidence 356889 99999999999999999997431 111122211 2
Q ss_pred CCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHcCCcEEEeccC
Q 004205 218 SPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRDGVHILSLSLG 296 (768)
Q Consensus 218 ~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG 296 (768)
...|..||||||||||+|+..+ +...||||+|+|+.+|++...+ +....+++||+||++.|++|||||||
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G 111 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLG 111 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccC
Confidence 2467889999999999997643 2237999999999999997654 66777999999999999999999999
Q ss_pred CCCC--------CCCCchhHHHHHHHHh---------------hcCCcEEEEeccCCCC-CCCc-----ccCCCceEEEc
Q 004205 297 PEAP--------QGDYFSDAISIGSFHA---------------TSRGILVVASAGNEGN-EGSV-----TNLAPWMFTIA 347 (768)
Q Consensus 297 ~~~~--------~~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~-~~~~-----~~~~p~vitVg 347 (768)
...+ ........++...+.+ .++|++||+||||++. .... +...+.+++|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~ 191 (297)
T cd07480 112 ADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVA 191 (297)
T ss_pred CCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEE
Confidence 8541 1111222333333333 6899999999999986 2211 11122333333
Q ss_pred ccCCCccceeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCch
Q 004205 348 ASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTE 427 (768)
Q Consensus 348 As~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~ 427 (768)
+...
T Consensus 192 ~V~~---------------------------------------------------------------------------- 195 (297)
T cd07480 192 AVGA---------------------------------------------------------------------------- 195 (297)
T ss_pred EECC----------------------------------------------------------------------------
Confidence 2110
Q ss_pred hHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccC
Q 004205 428 SKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSS 507 (768)
Q Consensus 428 ~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs 507 (768)
.+....|++
T Consensus 196 -----------------------------------------------------------------------~~~~~~~~~ 204 (297)
T cd07480 196 -----------------------------------------------------------------------LGRTGNFSA 204 (297)
T ss_pred -----------------------------------------------------------------------CCCCCCccc
Confidence 011222333
Q ss_pred CCCCCCCCCcccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccC
Q 004205 508 KGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDK 587 (768)
Q Consensus 508 ~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~ 587 (768)
+.+. ...||||+|||.+|+++.+. +.|..++|||||||+|||++||++|++|.+++.+++.+|++.......
T Consensus 205 ~~~~----~~~~~dv~ApG~~i~s~~~~----~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~ 276 (297)
T cd07480 205 VANF----SNGEVDIAAPGVDIVSAAPG----GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAART 276 (297)
T ss_pred cCCC----CCCceEEEeCCCCeEeecCC----CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhccc
Confidence 3221 23578999999999999774 569999999999999999999999999999998888888754332100
Q ss_pred CCCCccCCCCCCCCCCCcccccccCcc
Q 004205 588 NHKPITVDPKGRRGNAFDYGSGFLNPR 614 (768)
Q Consensus 588 ~g~p~~~~~~~~~~~~~~~G~G~vn~~ 614 (768)
. ..........+|+|++++.
T Consensus 277 ~-------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 277 T-------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred C-------CCCCCCChhhcCCceeecC
Confidence 0 0233456678999999875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=355.58 Aligned_cols=241 Identities=22% Similarity=0.189 Sum_probs=177.0
Q ss_pred CCCCcCCCCC-CCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccc
Q 004205 132 ESMEIPGFST-KNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDI 210 (768)
Q Consensus 132 ~~~~~~~~~~-~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~ 210 (768)
++.++|+... .| +||+|+|||+|||.+||||.+.... . ..+
T Consensus 3 ~~~~aw~~~~g~G-~gV~VaviDtGid~~Hpdl~~~~~~--------------------------~----~~~------- 44 (277)
T cd04843 3 NARYAWTKPGGSG-QGVTFVDIEQGWNLNHEDLVGNGIT--------------------------L----ISG------- 44 (277)
T ss_pred ChHHHHHhcCCCC-CcEEEEEecCCCCCCChhhcccccc--------------------------c----cCC-------
Confidence 4668898755 47 9999999999999999999743110 0 000
Q ss_pred cccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHH----c
Q 004205 211 VETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIR----D 286 (768)
Q Consensus 211 ~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~----~ 286 (768)
..+.|+++|||||||||+|..+ -.| +.||||+|+|+.+|+++ .++++++|.+|++ .
T Consensus 45 ------~~~~d~~gHGT~VAGiIaa~~n----~~G-----~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~ 104 (277)
T cd04843 45 ------LTDQADSDHGTAVLGIIVAKDN----GIG-----VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPG 104 (277)
T ss_pred ------CCCCCCCCCcchhheeeeeecC----CCc-----eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCC
Confidence 1145778999999999998642 123 48999999999999985 3456667777766 4
Q ss_pred CCcEEEeccCCCCCCC----CCchhHHHHHHHHhhcCCcEEEEeccCCCC-CC--Cc----------cc-CCCceEEEcc
Q 004205 287 GVHILSLSLGPEAPQG----DYFSDAISIGSFHATSRGILVVASAGNEGN-EG--SV----------TN-LAPWMFTIAA 348 (768)
Q Consensus 287 g~dVIN~SlG~~~~~~----~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~--~~----------~~-~~p~vitVgA 348 (768)
++.+||||||...... ......+..++.++.++|++||+||||++. .. .. ++ ..+++|+|||
T Consensus 105 ~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA 184 (277)
T cd04843 105 DVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGA 184 (277)
T ss_pred CEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEe
Confidence 5778999999874111 012345667888889999999999999986 11 10 11 1245777776
Q ss_pred cCCCccceeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchh
Q 004205 349 SSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTES 428 (768)
Q Consensus 349 s~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~ 428 (768)
++.+
T Consensus 185 ~~~~---------------------------------------------------------------------------- 188 (277)
T cd04843 185 GSST---------------------------------------------------------------------------- 188 (277)
T ss_pred ccCC----------------------------------------------------------------------------
Confidence 4211
Q ss_pred HHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCC
Q 004205 429 KLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSK 508 (768)
Q Consensus 429 ~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~ 508 (768)
....++.||||
T Consensus 189 ---------------------------------------------------------------------~~~~~~~fSn~ 199 (277)
T cd04843 189 ---------------------------------------------------------------------TGHTRLAFSNY 199 (277)
T ss_pred ---------------------------------------------------------------------CCCccccccCC
Confidence 01237899999
Q ss_pred CCCCCCCCcccCceeeCCceEEEEecCCC------CCcceEEeccccchhHHHHHHHHHHHH----h-CCCCCHHHHHHH
Q 004205 509 GPNALNPEILKPDVTAPGLNIIAAWSPAV------GKMQFNILSGTSMACPHVTGIATLIKA----V-HPSWSPSAIKSA 577 (768)
Q Consensus 509 Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~------~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~lsp~~ik~~ 577 (768)
|+.. ||+|||++|+++..... ....|..++|||||||||||++|||++ + +|+|+|+|||++
T Consensus 200 G~~v--------di~APG~~i~s~~~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~ 271 (277)
T cd04843 200 GSRV--------DVYGWGENVTTTGYGDLQDLGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMREL 271 (277)
T ss_pred CCcc--------ceEcCCCCeEecCCCCcccccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Confidence 9987 99999999999987421 112357899999999999999999975 3 499999999999
Q ss_pred HHhhcc
Q 004205 578 IMTTAT 583 (768)
Q Consensus 578 L~~TA~ 583 (768)
|++|++
T Consensus 272 L~~t~~ 277 (277)
T cd04843 272 LTATGT 277 (277)
T ss_pred HHhcCC
Confidence 999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=348.83 Aligned_cols=250 Identities=29% Similarity=0.418 Sum_probs=189.7
Q ss_pred cceEEEEEeCCCCCCCCCCCCCCCC-CCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCC
Q 004205 145 VNIIVGFIDTGIWPESPSFSDIGMP-PAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSS 223 (768)
Q Consensus 145 ~GV~VgVIDtGid~~Hp~f~~~~~~-~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~ 223 (768)
+||+|||||||||++||+|.+.... .....+.+....+..|. ....++.+. ....++.|..
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-------------~~~~~~~d~~ 63 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGNGYV-----DDIYGWNFV-------------NNDNDPMDDN 63 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCCCcc-----cCCCccccc-------------CCCCCCCCCC
Confidence 7999999999999999999864211 00011111111111110 001111110 1124567889
Q ss_pred CCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHcCCcEEEeccCCCCCCC
Q 004205 224 GHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQG 302 (768)
Q Consensus 224 gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~ 302 (768)
+|||||||||+|...++. .+.||||+|+|+.+|++...+ ++..+++++|+++++.+++|||+|||...
T Consensus 64 ~HGT~va~ii~~~~~~~~--------~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~--- 132 (259)
T cd07473 64 GHGTHVAGIIGAVGNNGI--------GIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGG--- 132 (259)
T ss_pred CcHHHHHHHHHCcCCCCC--------ceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC---
Confidence 999999999999774332 248999999999999998776 78889999999999999999999999884
Q ss_pred CCchhHHHHHHHHhhcCCcEEEEeccCCCC-C---CCccc--CCCceEEEcccCCCccceeeEEeCCCceEecccccccc
Q 004205 303 DYFSDAISIGSFHATSRGILVVASAGNEGN-E---GSVTN--LAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCK 376 (768)
Q Consensus 303 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~---~~~~~--~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p 376 (768)
....+..++.++.++|++||+||||+|. . ...+. ..+++|+||+.+
T Consensus 133 --~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~-------------------------- 184 (259)
T cd07473 133 --PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATD-------------------------- 184 (259)
T ss_pred --CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecC--------------------------
Confidence 2567778888899999999999999987 2 23333 346788888643
Q ss_pred cccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCc
Q 004205 377 MNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAI 456 (768)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~ 456 (768)
T Consensus 185 -------------------------------------------------------------------------------- 184 (259)
T cd07473 185 -------------------------------------------------------------------------------- 184 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCC
Q 004205 457 PFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPA 536 (768)
Q Consensus 457 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~ 536 (768)
..+.++.||++||.. ||+.|||.++++..+.
T Consensus 185 -----------------------------------------~~~~~~~~s~~g~~~-------~~~~apG~~~~~~~~~- 215 (259)
T cd07473 185 -----------------------------------------SNDALASFSNYGKKT-------VDLAAPGVDILSTSPG- 215 (259)
T ss_pred -----------------------------------------CCCCcCcccCCCCCC-------cEEEeccCCeEeccCC-
Confidence 124566799999863 5999999999997653
Q ss_pred CCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 537 VGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 537 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
..|..++|||||||+|||++||++|++|.+++++||++|++||+
T Consensus 216 ---~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 216 ---GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred ---CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 56999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=343.33 Aligned_cols=225 Identities=33% Similarity=0.513 Sum_probs=185.6
Q ss_pred ceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCC
Q 004205 146 NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGH 225 (768)
Q Consensus 146 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 225 (768)
||+|||||+||+++||+|.+. +.....|..+.+ ....|..+|
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~~~-----------~~~~~~~~H 42 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGDDN-----------NDYQDGNGH 42 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCCCC-----------CCCCCCCCC
Confidence 799999999999999999642 112222222100 234578899
Q ss_pred cchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHcCCcEEEeccCCCCCCCCC
Q 004205 226 GSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDY 304 (768)
Q Consensus 226 GTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~ 304 (768)
||||||||++..... .+.|+||+|+|+.+|+++..+ +...+++++++++++.|++|||||||...
T Consensus 43 GT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~----- 108 (229)
T cd07477 43 GTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS----- 108 (229)
T ss_pred HHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC-----
Confidence 999999999976322 348999999999999998766 66789999999999999999999999874
Q ss_pred chhHHHHHHHHhhcCCcEEEEeccCCCC-CCC--cccCCCceEEEcccCCCccceeeEEeCCCceEecccccccccccch
Q 004205 305 FSDAISIGSFHATSRGILVVASAGNEGN-EGS--VTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASA 381 (768)
Q Consensus 305 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~--~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~ 381 (768)
....+..++..+.++|+++|+||||++. ... .++..+++|+||+++.+
T Consensus 109 ~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~----------------------------- 159 (229)
T cd07477 109 DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN----------------------------- 159 (229)
T ss_pred CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC-----------------------------
Confidence 3345667777889999999999999998 433 48888999999975321
Q ss_pred hccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceee
Q 004205 382 RIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIP 461 (768)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p 461 (768)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCCCCcc
Q 004205 462 SAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQ 541 (768)
Q Consensus 462 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~ 541 (768)
+.++.||++|+.. |+.|||++|+++++. +.
T Consensus 160 --------------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~----~~ 189 (229)
T cd07477 160 --------------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN----ND 189 (229)
T ss_pred --------------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC----CC
Confidence 4466899999976 999999999999774 55
Q ss_pred eEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 004205 542 FNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTT 581 (768)
Q Consensus 542 y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~T 581 (768)
|..++|||||||+|||++|||+|++|+++|++||++|++|
T Consensus 190 ~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 190 YAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred EEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 8999999999999999999999999999999999999986
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=357.07 Aligned_cols=276 Identities=34% Similarity=0.522 Sum_probs=210.0
Q ss_pred EEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCCcc
Q 004205 148 IVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGS 227 (768)
Q Consensus 148 ~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGT 227 (768)
+|||||||||++||+|.... + ...++.+.+.+.++. .......|..+|||
T Consensus 1 ~V~viDtGid~~h~~~~~~~-----------------~----~~~~~~~~~~~~~~~---------~~~~~~~~~~~HGT 50 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-----------------F----IWSKVPGGYNFVDGN---------PNPSPSDDDNGHGT 50 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-----------------E----EEEEEEEEEETTTTB---------STTTSSSTSSSHHH
T ss_pred CEEEEcCCcCCCChhHccCC-----------------c----ccccccceeeccCCC---------CCcCccccCCCccc
Confidence 69999999999999996111 0 012334455555442 11234567889999
Q ss_pred hhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHH-HcCCcEEEeccCCCCC-CCCCc
Q 004205 228 HTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAI-RDGVHILSLSLGPEAP-QGDYF 305 (768)
Q Consensus 228 HVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~-~~g~dVIN~SlG~~~~-~~~~~ 305 (768)
||||||+|.. . .. .....|+||+|+|+.+|++...+.....++++|++++ +.+++|||||||.... .....
T Consensus 51 ~va~ii~~~~-~-~~-----~~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~ 123 (282)
T PF00082_consen 51 HVAGIIAGNG-G-NN-----GPGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSY 123 (282)
T ss_dssp HHHHHHHHTT-S-SS-----SSSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHH
T ss_pred hhhhhccccc-c-cc-----ccccccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccccccc
Confidence 9999999986 2 11 1234899999999999998776677788999999999 8899999999998320 11123
Q ss_pred hhHHHHHHHHhhcCCcEEEEeccCCCC-CC---CcccCCCceEEEcccCCCccceeeEEeCCCceEecccccccccccch
Q 004205 306 SDAISIGSFHATSRGILVVASAGNEGN-EG---SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASA 381 (768)
Q Consensus 306 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~---~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~ 381 (768)
...+..+++.+.++|+++|+||||+|. .. ..|+..+++|+||++..
T Consensus 124 ~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~------------------------------ 173 (282)
T PF00082_consen 124 SDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN------------------------------ 173 (282)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET------------------------------
T ss_pred ccccccccccccccCcceeecccccccccccccccccccccccccccccc------------------------------
Confidence 445667777888999999999999998 33 45667788899986421
Q ss_pred hccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceee
Q 004205 382 RIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIP 461 (768)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p 461 (768)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCCCCcc
Q 004205 462 SAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQ 541 (768)
Q Consensus 462 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~ 541 (768)
.+.++.||++|+.. .++++||||+|||.+|+++++.. ....
T Consensus 174 -------------------------------------~~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~-~~~~ 214 (282)
T PF00082_consen 174 -------------------------------------NGQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGS-DRGS 214 (282)
T ss_dssp -------------------------------------TSSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTT-ESEE
T ss_pred -------------------------------------cccccccccccccc-ccccccccccccccccccccccc-cccc
Confidence 13568899997654 27899999999999999998741 1145
Q ss_pred eEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcccccccCccccCC
Q 004205 542 FNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLS 618 (768)
Q Consensus 542 y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~vn~~~Al~ 618 (768)
|..++|||||||+|||++||++|++|++++++||.+|++||.+++.. ........||||++|+++|++
T Consensus 215 ~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~---------~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 215 YTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGST---------NGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSET---------TSSSSHHHHTTSBE-HHHHHH
T ss_pred ccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcC---------CCCCCCCCccCChhCHHHHhC
Confidence 88999999999999999999999999999999999999999976411 134556788999999999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=343.67 Aligned_cols=215 Identities=24% Similarity=0.258 Sum_probs=166.3
Q ss_pred cceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCC
Q 004205 145 VNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSG 224 (768)
Q Consensus 145 ~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~g 224 (768)
++|+|||||||||++||+|.+. +...+.|........ .......|..|
T Consensus 3 ~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~~~-----~~~~~~~d~~g 50 (247)
T cd07491 3 KRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGDGN-----KVSPYYVSADG 50 (247)
T ss_pred CCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCCcc-----cCCCCCCCCCC
Confidence 9999999999999999999642 112222222111000 00112357889
Q ss_pred CcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-------CCHHHHHHHHHHHHHcCCcEEEeccCC
Q 004205 225 HGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-------CYDVDLLAAFDDAIRDGVHILSLSLGP 297 (768)
Q Consensus 225 HGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-------~~~~~i~~ai~~a~~~g~dVIN~SlG~ 297 (768)
|||||||||+ |+||+|+|+.+|+++..+ ++...+++||+||+++|+||||||||.
T Consensus 51 HGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~ 112 (247)
T cd07491 51 HGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTI 112 (247)
T ss_pred cHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeec
Confidence 9999999994 589999999999998543 456789999999999999999999998
Q ss_pred CCCCC-CCchhHHHHHHHHhhcCCcEEEEeccCCCC-CC---CcccCCCceEEEcccCCCccceeeEEeCCCceEecccc
Q 004205 298 EAPQG-DYFSDAISIGSFHATSRGILVVASAGNEGN-EG---SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESL 372 (768)
Q Consensus 298 ~~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~---~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~ 372 (768)
..... ......+..++.+|.++|++||+||||+|. .. ..++..+++|+|||++.+
T Consensus 113 ~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~-------------------- 172 (247)
T cd07491 113 KKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADED-------------------- 172 (247)
T ss_pred ccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCC--------------------
Confidence 75110 113577888899999999999999999998 32 345677899999985421
Q ss_pred cccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCC
Q 004205 373 SLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGK 452 (768)
Q Consensus 373 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~ 452 (768)
T Consensus 173 -------------------------------------------------------------------------------- 172 (247)
T cd07491 173 -------------------------------------------------------------------------------- 172 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEE
Q 004205 453 DVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAA 532 (768)
Q Consensus 453 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa 532 (768)
+.++.||++|+.. |++|||++|+++
T Consensus 173 -----------------------------------------------g~~~~~S~~g~~v--------d~~APG~~i~s~ 197 (247)
T cd07491 173 -----------------------------------------------GGADAPVGDEDRV--------DYILPGENVEAR 197 (247)
T ss_pred -----------------------------------------------CCCccccCCCCcc--------eEEeCCCceecC
Confidence 4567899999988 999999999998
Q ss_pred ecCCCCCcceEEeccccchhHHHHHHHHHHHHh
Q 004205 533 WSPAVGKMQFNILSGTSMACPHVTGIATLIKAV 565 (768)
Q Consensus 533 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~ 565 (768)
.+. ...+.|..++|||||||||||++||+++.
T Consensus 198 ~~~-~~~~~~~~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 198 DRP-PLSNSFVTHTGSSVATALAAGLAALILYC 229 (247)
T ss_pred CcC-CCCCCeeeeccHHHHHHHHHHHHHHHHHH
Confidence 752 12356999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=353.71 Aligned_cols=251 Identities=20% Similarity=0.184 Sum_probs=183.0
Q ss_pred cCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccc
Q 004205 131 EESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDI 210 (768)
Q Consensus 131 ~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~ 210 (768)
+++..+|+.+++| +||+|+|||||||++||+|.+.... ...+.+..+...
T Consensus 26 ~~~~~~w~~g~~G-~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~~~---- 75 (297)
T cd04059 26 LNVTPAWEQGITG-KGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDNDPD---- 75 (297)
T ss_pred cccHHHHhCCCCC-cceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCCCC----
Confidence 5677999999999 9999999999999999999743210 011122211100
Q ss_pred cccccCCCC--CCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHHcCC
Q 004205 211 VETVSFRSP--RDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGV 288 (768)
Q Consensus 211 ~~~~~~~~~--~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~~g~ 288 (768)
..+ .|..||||||||||+|+..+.. ...||||+|+|+.+|++... .....+..++.++.+ .+
T Consensus 76 ------~~~~~~~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~ 139 (297)
T cd04059 76 ------PTPRYDDDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YI 139 (297)
T ss_pred ------CCCccccccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecCCc-cccHHHHHHHhcccC-Cc
Confidence 112 2788999999999999864321 23899999999999999754 334445556655544 46
Q ss_pred cEEEeccCCCCCCC--CCchhHHHHHHHHhhc-----CCcEEEEeccCCCC-CC----CcccCCCceEEEcccCCCccce
Q 004205 289 HILSLSLGPEAPQG--DYFSDAISIGSFHATS-----RGILVVASAGNEGN-EG----SVTNLAPWMFTIAASSTDRDFT 356 (768)
Q Consensus 289 dVIN~SlG~~~~~~--~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~-~~----~~~~~~p~vitVgAs~~~~~~~ 356 (768)
+|||||||...... .........++.++.. +|++||+||||+|. .. ..+...+++|+|||++.
T Consensus 140 ~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~----- 214 (297)
T cd04059 140 DIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA----- 214 (297)
T ss_pred eEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC-----
Confidence 99999999775211 1122333444444442 79999999999997 22 22345678888887432
Q ss_pred eeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHH
Q 004205 357 SEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVV 436 (768)
Q Consensus 357 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~ 436 (768)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCC
Q 004205 437 KEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPE 516 (768)
Q Consensus 437 ~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~ 516 (768)
.+.++.||++|+..
T Consensus 215 --------------------------------------------------------------~g~~~~~s~~g~~~---- 228 (297)
T cd04059 215 --------------------------------------------------------------NGVRASYSEVGSSV---- 228 (297)
T ss_pred --------------------------------------------------------------CCCCcCCCCCCCcE----
Confidence 24567899999988
Q ss_pred cccCceeeCCce-------EEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 517 ILKPDVTAPGLN-------IIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 517 ~~KPDI~APG~~-------I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
+++|||.. |+++... .....|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 229 ----~~~a~g~~~~~~~~~i~~~~~~-~~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 229 ----LASAPSGGSGNPEASIVTTDLG-GNCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred ----EEEecCCCCCCCCCceEeCCCC-CCCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 99999988 7776552 11356789999999999999999999999999999999999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=350.39 Aligned_cols=149 Identities=30% Similarity=0.346 Sum_probs=106.6
Q ss_pred ceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCcccc-ccccccccCCCCCCCCC
Q 004205 146 NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAE-EDIVETVSFRSPRDSSG 224 (768)
Q Consensus 146 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~-~~~~~~~~~~~~~D~~g 224 (768)
.|+|||||||||++||+|.+.-. ...+.+....... .......+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSIS--------------------------SYSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccc--------------------------ccccccccCCCcCCccccccCCCCcCCCCCC
Confidence 48999999999999999974210 0001110000000 00000111234567899
Q ss_pred CcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCC-CHHHHHHHHHHHHHcCCcEEEeccCCCCCCC-
Q 004205 225 HGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGC-YDVDLLAAFDDAIRDGVHILSLSLGPEAPQG- 302 (768)
Q Consensus 225 HGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~-~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~- 302 (768)
|||||||+|+|+.. ..||||+|+|+.+|+++..+. ...++++||+||++++++|||||||......
T Consensus 55 HGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~ 122 (294)
T cd07482 55 HGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGG 122 (294)
T ss_pred cHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCc
Confidence 99999999998642 259999999999999987664 7889999999999999999999999764211
Q ss_pred -----CCchhHHHHHHHHhhcCCcEEEEeccCCCC
Q 004205 303 -----DYFSDAISIGSFHATSRGILVVASAGNEGN 332 (768)
Q Consensus 303 -----~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~ 332 (768)
......+..+++.+.++|++||+||||+|.
T Consensus 123 ~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~ 157 (294)
T cd07482 123 EYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGL 157 (294)
T ss_pred ccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCc
Confidence 112245677777888999999999999996
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=328.38 Aligned_cols=221 Identities=24% Similarity=0.303 Sum_probs=173.2
Q ss_pred ceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCC
Q 004205 146 NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGH 225 (768)
Q Consensus 146 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 225 (768)
||+|||||||||++||+|.+... ..+.+..+.. ..+.....|..||
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~---------------------------~~~~~~~~~~-------~~~~~~~~d~~gH 46 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL---------------------------DGEVTIDLEI-------IVVSAEGGDKDGH 46 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc---------------------------cccccccccc-------ccCCCCCCCCCCc
Confidence 79999999999999999974311 0011100000 0011345678899
Q ss_pred cchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHcCCcEEEeccCCCCCCCCC
Q 004205 226 GSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDY 304 (768)
Q Consensus 226 GTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~ 304 (768)
||||||||++ .+|+++|+.+|+++..+ +..+++++||+|++++|++|||||||.... .
T Consensus 47 GT~vAgiia~------------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~---~ 105 (222)
T cd07492 47 GTACAGIIKK------------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGD---R 105 (222)
T ss_pred HHHHHHHHHc------------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC---C
Confidence 9999999975 35999999999998766 788899999999999999999999998751 2
Q ss_pred chhHHHHHHHHhhcCCcEEEEeccCCCCCCCcccCCCceEEEcccCCCccceeeEEeCCCceEecccccccccccchhcc
Q 004205 305 FSDAISIGSFHATSRGILVVASAGNEGNEGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARII 384 (768)
Q Consensus 305 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~ 384 (768)
....+..+++++.++|+++|+||||++.....|+..+.+|+|++...+
T Consensus 106 ~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~~Pa~~~~vi~V~~~~~~-------------------------------- 153 (222)
T cd07492 106 DFPLLKELLEYAYKAGGIIVAAAPNNNDIGTPPASFPNVIGVKSDTAD-------------------------------- 153 (222)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCceEEEEecCCC--------------------------------
Confidence 335677788888899999999999999833337788899999864311
Q ss_pred ccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEE
Q 004205 385 SASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAV 464 (768)
Q Consensus 385 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~ 464 (768)
T Consensus 154 -------------------------------------------------------------------------------- 153 (222)
T cd07492 154 -------------------------------------------------------------------------------- 153 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred echhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCCCCcceEE
Q 004205 465 VGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNI 544 (768)
Q Consensus 465 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~ 544 (768)
... +.+++. +|+.|||.+|+++.+. +.|..
T Consensus 154 -----------------------------------~~~---~~~~~~--------~~~~apg~~i~~~~~~----~~~~~ 183 (222)
T cd07492 154 -----------------------------------DPK---SFWYIY--------VEFSADGVDIIAPAPH----GRYLT 183 (222)
T ss_pred -----------------------------------CCc---ccccCC--------ceEEeCCCCeEeecCC----CCEEE
Confidence 001 112343 4999999999999774 56999
Q ss_pred eccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 545 LSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 545 ~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 184 ~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 184 VSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred eccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=331.22 Aligned_cols=355 Identities=22% Similarity=0.306 Sum_probs=264.4
Q ss_pred CcEEEEEeCCCCCCCCchhhHhHHHHHHHHhcCcccc-----cccceEEEecceeeEEEEEeCH-----HHHHHHhcCCC
Q 004205 36 AKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQ-----AQASHVYSYKHGFRGFAAKLTD-----QQASQIAQMPG 105 (768)
Q Consensus 36 ~~~yiV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~y~~~~~g~s~~~~~-----~~~~~L~~~p~ 105 (768)
+..|||.|+.... ...|...+++.+.+|... .....-..|-..|.-+-++=.. -++++|..+|.
T Consensus 49 e~EyIv~F~~y~~------Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~ 122 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKP------AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPD 122 (1033)
T ss_pred cceeEEEeccccc------chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCC
Confidence 5789999998752 245667777776333211 1112234455555555554332 35899999999
Q ss_pred eEEEEecceeccCCC------------C----------C--------cccccc----------cccCCCCcCCCCCCCCc
Q 004205 106 VVSVFPNMKRRLHTT------------H----------S--------WDFMGL----------MGEESMEIPGFSTKNQV 145 (768)
Q Consensus 106 V~~V~~~~~~~~~~~------------~----------s--------~~~~g~----------~~~~~~~~~~~~~~Gg~ 145 (768)
|+.|.|.+.+..-.. . + |.-++- +..+++-+|..|++| +
T Consensus 123 vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTG-a 201 (1033)
T KOG4266|consen 123 VKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTG-A 201 (1033)
T ss_pred ceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccC-C
Confidence 999999887643100 0 0 000000 013577899999999 9
Q ss_pred ceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCC
Q 004205 146 NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGH 225 (768)
Q Consensus 146 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 225 (768)
+|+|||.|||+.-+||.|+.- .....+.++ ..-.|.-||
T Consensus 202 ~VkvAiFDTGl~~~HPHFrnv----------------------------KERTNWTNE-------------~tLdD~lgH 240 (1033)
T KOG4266|consen 202 KVKVAIFDTGLRADHPHFRNV----------------------------KERTNWTNE-------------DTLDDNLGH 240 (1033)
T ss_pred ceEEEEeecccccCCccccch----------------------------hhhcCCcCc-------------cccccCccc
Confidence 999999999999999999621 000111111 244578899
Q ss_pred cchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHcCCcEEEeccCCCCCCCCC
Q 004205 226 GSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDY 304 (768)
Q Consensus 226 GTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~ 304 (768)
||.|||+|||... -.|.||+++|+++|||.+.. .+.+..+.|+.||+....||+|+|+|++. +
T Consensus 241 GTFVAGvia~~~e------------c~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD----f 304 (1033)
T KOG4266|consen 241 GTFVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPD----F 304 (1033)
T ss_pred ceeEeeeeccchh------------hcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCcc----c
Confidence 9999999998752 27889999999999998776 78899999999999999999999999885 7
Q ss_pred chhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccCC--CceEEEcccCCCccceeeEEeCCCceEecccccccccccch
Q 004205 305 FSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLA--PWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASA 381 (768)
Q Consensus 305 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~~--p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~ 381 (768)
.+.|+-.-+.......|++|.|+||+|+ .++..+++ ..+|.||.
T Consensus 305 mD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG--------------------------------- 351 (1033)
T KOG4266|consen 305 MDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG--------------------------------- 351 (1033)
T ss_pred ccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecc---------------------------------
Confidence 7778777777888999999999999999 77765543 34566652
Q ss_pred hccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceee
Q 004205 382 RIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIP 461 (768)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p 461 (768)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCC----CCCcccCceeeCCceEEEEecCCC
Q 004205 462 SAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNAL----NPEILKPDVTAPGLNIIAAWSPAV 537 (768)
Q Consensus 462 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~~KPDI~APG~~I~Sa~~~~~ 537 (768)
.+..+.++.|||||-+.. ..||+||||++-|.+|......
T Consensus 352 ----------------------------------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~-- 395 (1033)
T KOG4266|consen 352 ----------------------------------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS-- 395 (1033)
T ss_pred ----------------------------------ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc--
Confidence 223478999999997653 3689999999999999876442
Q ss_pred CCcceEEeccccchhHHHHHHHHHHHH----hCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcccccccCc
Q 004205 538 GKMQFNILSGTSMACPHVTGIATLIKA----VHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNP 613 (768)
Q Consensus 538 ~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~vn~ 613 (768)
.+...+||||.|+|.|||+++|+.+ +.--+.|+.+|++|+..|.++. ...-++||+|++|+
T Consensus 396 --~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLp-------------g~NMfEQGaGkldL 460 (1033)
T KOG4266|consen 396 --TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLP-------------GPNMFEQGAGKLDL 460 (1033)
T ss_pred --ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCC-------------CCchhhccCcchhH
Confidence 4578999999999999999999976 3344689999999999999762 12347999999999
Q ss_pred cccCC
Q 004205 614 RKVLS 618 (768)
Q Consensus 614 ~~Al~ 618 (768)
.++.+
T Consensus 461 L~syq 465 (1033)
T KOG4266|consen 461 LESYQ 465 (1033)
T ss_pred HHHHH
Confidence 88876
|
|
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=330.40 Aligned_cols=243 Identities=29% Similarity=0.411 Sum_probs=185.1
Q ss_pred CCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCC
Q 004205 142 KNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRD 221 (768)
Q Consensus 142 ~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D 221 (768)
+| +||+|+|||+||+++||+|.+..... ..+..... .......|
T Consensus 1 tG-~gv~VaiiDsG~~~~h~~l~~~~~~~---------------------------~~~~~~~~--------~~~~~~~~ 44 (267)
T cd04848 1 TG-AGVKVGVIDSGIDLSHPEFAGRVSEA---------------------------SYYVAVND--------AGYASNGD 44 (267)
T ss_pred CC-CceEEEEEeCCCCCCCccccCccccc---------------------------cccccccc--------ccCCCCCC
Confidence 46 99999999999999999997542110 00000000 00123457
Q ss_pred CCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC--CCHHHHHHHHHHHHHcCCcEEEeccCCCC
Q 004205 222 SSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG--CYDVDLLAAFDDAIRDGVHILSLSLGPEA 299 (768)
Q Consensus 222 ~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 299 (768)
..+|||||||+|+|+..+ ..+.|+||+|+|+.+|+++..+ +....+.++++++++.+++|||||||...
T Consensus 45 ~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~ 115 (267)
T cd04848 45 GDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNP 115 (267)
T ss_pred CCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCC
Confidence 789999999999998643 3358999999999999998764 56678899999999999999999999885
Q ss_pred CCCC----------CchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCc---------ccCCCceEEEcccCCCccceeeE
Q 004205 300 PQGD----------YFSDAISIGSFHATSRGILVVASAGNEGN-EGSV---------TNLAPWMFTIAASSTDRDFTSEI 359 (768)
Q Consensus 300 ~~~~----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~---------~~~~p~vitVgAs~~~~~~~~~~ 359 (768)
.... .....+...++.+.++|+++|+||||++. .... ++..+++|+||+.+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~------- 188 (267)
T cd04848 116 AIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN------- 188 (267)
T ss_pred cccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC-------
Confidence 2111 14466777788889999999999999987 2221 3345778888875422
Q ss_pred EeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHc
Q 004205 360 VLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEA 439 (768)
Q Consensus 360 ~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~ 439 (768)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCcccc--ccCCCCCCCCCCc
Q 004205 440 GGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAA--FSSKGPNALNPEI 517 (768)
Q Consensus 440 Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp~~~~~~~ 517 (768)
+.... ||++|+..
T Consensus 189 ------------------------------------------------------------~~~~~~~~s~~~~~~----- 203 (267)
T cd04848 189 ------------------------------------------------------------GTIASYSYSNRCGVA----- 203 (267)
T ss_pred ------------------------------------------------------------CCcccccccccchhh-----
Confidence 12223 48888654
Q ss_pred ccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 518 LKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 518 ~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
-.++++|||.+|+++.+. ....|..++|||||||+|||++||++|++|+|+++|||++|++||+
T Consensus 204 ~~~~~~apG~~i~~~~~~--~~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 204 ANWCLAAPGENIYSTDPD--GGNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred hhheeecCcCceeecccC--CCCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 234799999999999762 2356899999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=307.96 Aligned_cols=358 Identities=22% Similarity=0.242 Sum_probs=231.0
Q ss_pred CCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC---CCHHHHHHHHHHHHHcCCcEEEeccCCC
Q 004205 222 SSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG---CYDVDLLAAFDDAIRDGVHILSLSLGPE 298 (768)
Q Consensus 222 ~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 298 (768)
...|||||||||+|+..... ...||||+|+|+++++.+..- .+...+.+|+..++++.+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 35699999999999986543 347999999999999987432 4456799999999999999999999988
Q ss_pred CCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcc---cCCCceEEEcccCCCccceeeEEeCCCceEecccccc
Q 004205 299 APQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVT---NLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSL 374 (768)
Q Consensus 299 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~---~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 374 (768)
. ..+.....++.+-+.+-++|+++|+||||+|+ -.+++ +....+|.|||.-......
T Consensus 381 a-~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~------------------ 441 (1304)
T KOG1114|consen 381 A-HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQ------------------ 441 (1304)
T ss_pred C-CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHH------------------
Confidence 6 22222334444444445899999999999999 44443 4556889999742111000
Q ss_pred cccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCC
Q 004205 375 CKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDV 454 (768)
Q Consensus 375 ~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~ 454 (768)
T Consensus 442 -------------------------------------------------------------------------------- 441 (1304)
T KOG1114|consen 442 -------------------------------------------------------------------------------- 441 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEec
Q 004205 455 AIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWS 534 (768)
Q Consensus 455 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~ 534 (768)
...+.. ..-...+..||||||+. ||.+--.|.|||+.|.|--.
T Consensus 442 -----------------a~y~~~------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~ 484 (1304)
T KOG1114|consen 442 -----------------AEYSVR------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQ 484 (1304)
T ss_pred -----------------hhhhhh------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCCch
Confidence 000000 11234578899999998 89999999999999976532
Q ss_pred CCCCCcceEEeccccchhHHHHHHHHHHHH----hCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcccccc
Q 004205 535 PAVGKMQFNILSGTSMACPHVTGIATLIKA----VHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGF 610 (768)
Q Consensus 535 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~ 610 (768)
. .-..-..|.|||||+|+++|.+|||++ .+-.+||..||.+|++||++++. -.++.||.|+
T Consensus 485 ~--tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~-------------id~faqG~Gm 549 (1304)
T KOG1114|consen 485 Y--TLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGD-------------IDSFAQGQGM 549 (1304)
T ss_pred h--hhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCc-------------cchhccCcce
Confidence 1 112357899999999999999999976 46779999999999999997632 2468999999
Q ss_pred cCccccCCCCeeecCCCcchhhhh-hccCCC-ccceeEeecCCCcCCCCCCCCCCCCC---CeEEecCCCccEEEEEEEE
Q 004205 611 LNPRKVLSPGLIYDAQPIDYTVFL-CSIGYD-EKSLHLVTRDNSKCSQKLPAPYDLNY---PSITVPNLKGNFSVTRSVT 685 (768)
Q Consensus 611 vn~~~Al~~~l~~~~~~~~y~~~~-~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~ln~---ps~~~~~~~~~~t~~~tv~ 685 (768)
+++.+|.+--.-.+.....-+.|+ ...|-+ ++.|++ +++..| ..+.+.+. |-|--.. .
T Consensus 550 lqVdkAyEyL~q~~~~f~~~l~f~~v~VgN~~srGIyL--Rep~~~----~~p~e~~i~VePiF~~~~-----------e 612 (1304)
T KOG1114|consen 550 LQVDKAYEYLAQSDFSFPNALGFINVNVGNSCSRGIYL--REPTQV----CSPSEHTIGVEPIFENGE-----------E 612 (1304)
T ss_pred eehhHHHHHHHHhhhcCCccceeEEEeeccccccceEe--cCCccc----CCccccceeccccccCcc-----------c
Confidence 999999862111111111112221 111111 122222 122211 01111211 1111000 0
Q ss_pred ecCCCceeEEEEEeCCCceEEEEecCEEEEcCCCeEEEEEEEEEecCCCCceEEEEEEEEcC-----ceEEEEEEEEE
Q 004205 686 NVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLTSPPKGYGFGYLSWKNG-----KLRVTSPLVVQ 758 (768)
Q Consensus 686 N~~~~~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~i~~~~~-----~~~v~~P~~~~ 758 (768)
|. .+...|.+.......-.|.-.|..|-+ .++.+.|.|+++++.+..+.+++.|.--|- +...|||+.|.
T Consensus 613 ~~-keki~Fe~~L~L~st~pwVq~p~~l~l--~~~~R~i~VrVDpt~l~~G~hy~eV~gyD~~~p~~gplFrIPVTVi 687 (1304)
T KOG1114|consen 613 NE-KEKISFEVQLSLASTQPWVQCPEYLML--ANQGRGINVRVDPTGLAPGVHYTEVLGYDTANPSRGPLFRIPVTVI 687 (1304)
T ss_pred cc-cccccceeeEeeecCCcceeCchhhee--ccCCceeEEEECCcCCCCCcceEEEEEeecCCcccCceEEeeeEEE
Confidence 11 112223332221111124444777777 578899999999988888888888886652 46899999987
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=288.11 Aligned_cols=195 Identities=22% Similarity=0.207 Sum_probs=142.1
Q ss_pred CCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHH--HHcCCcEEEeccC
Q 004205 219 PRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDA--IRDGVHILSLSLG 296 (768)
Q Consensus 219 ~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a--~~~g~dVIN~SlG 296 (768)
..|.+||||||||||||.. |++|+++|+..++.. .....+.++++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~~---------------~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGRD---------------GGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhcc---------------CCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 4478999999999999863 467999999766532 2233466778888 5678999999999
Q ss_pred CCCCCC----CCchhHHHHHHHHhhcC-CcEEEEeccCCCC-C-----CCcccCCCceEEEcccCCCccceeeEEeCCCc
Q 004205 297 PEAPQG----DYFSDAISIGSFHATSR-GILVVASAGNEGN-E-----GSVTNLAPWMFTIAASSTDRDFTSEIVLGDGA 365 (768)
Q Consensus 297 ~~~~~~----~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~-~-----~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~ 365 (768)
...... -...+.+..+++.+.++ |+++|+||||+|. . ...+..++++|+|||++....
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~----------- 163 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD----------- 163 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-----------
Confidence 875211 01234567777777766 9999999999997 2 123567788999998542210
Q ss_pred eEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEE
Q 004205 366 NFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMI 445 (768)
Q Consensus 366 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i 445 (768)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeC
Q 004205 446 LVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAP 525 (768)
Q Consensus 446 ~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 525 (768)
....+.||++|.....++..||||+||
T Consensus 164 -----------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~AP 190 (247)
T cd07488 164 -----------------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAP 190 (247)
T ss_pred -----------------------------------------------------cceecccccccCCCCCCCCceeEEEEe
Confidence 012345666543222367899999999
Q ss_pred CceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHH------HHHHHHHhh
Q 004205 526 GLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPS------AIKSAIMTT 581 (768)
Q Consensus 526 G~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~------~ik~~L~~T 581 (768)
|++|++ + . +.|..++|||||||||||++|||++++|++.+. ++|.+|++|
T Consensus 191 G~~i~s--~--~--~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 191 GSNYNL--P--D--GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred eeeEEC--C--C--CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 999998 3 2 358899999999999999999999998887643 466666655
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-31 Score=274.91 Aligned_cols=195 Identities=34% Similarity=0.510 Sum_probs=158.0
Q ss_pred CCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHH-HcCCcEEEecc
Q 004205 218 SPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAI-RDGVHILSLSL 295 (768)
Q Consensus 218 ~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~-~~g~dVIN~Sl 295 (768)
...+..+||||||++|++..... ...|+||+++|+.+|+....+ .....+++++++++ +.+++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 34567899999999999876432 127999999999999997665 66788999999999 89999999999
Q ss_pred CCCCCCCCCchhHHHHHHHHhhcC-CcEEEEeccCCCC-CC---CcccCCCceEEEcccCCCccceeeEEeCCCceEecc
Q 004205 296 GPEAPQGDYFSDAISIGSFHATSR-GILVVASAGNEGN-EG---SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGE 370 (768)
Q Consensus 296 G~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~-~~---~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~ 370 (768)
|..... ....+..++..+.++ |+++|+||||.+. .. ..++..+++|+||+++.+.
T Consensus 110 g~~~~~---~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~----------------- 169 (241)
T cd00306 110 GGPGSP---PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG----------------- 169 (241)
T ss_pred CCCCCC---CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-----------------
Confidence 988511 345667777788777 9999999999998 43 5788899999999854321
Q ss_pred cccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCC
Q 004205 371 SLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEP 450 (768)
Q Consensus 371 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~ 450 (768)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCcc-ccccCCCCCCCCCCcccCceeeCCceE
Q 004205 451 GKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRV-AAFSSKGPNALNPEILKPDVTAPGLNI 529 (768)
Q Consensus 451 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-a~fSs~Gp~~~~~~~~KPDI~APG~~I 529 (768)
.. ..++++|+ |||+.|||.++
T Consensus 170 --------------------------------------------------~~~~~~~~~~~--------~~~~~apg~~~ 191 (241)
T cd00306 170 --------------------------------------------------TPASPSSNGGA--------GVDIAAPGGDI 191 (241)
T ss_pred --------------------------------------------------CccCCcCCCCC--------CceEEeCcCCc
Confidence 11 13445554 55999999999
Q ss_pred EEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 004205 530 IAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTT 581 (768)
Q Consensus 530 ~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~T 581 (768)
.+... .....+..++|||||||+|||++||++|++|++++.++|++|+.|
T Consensus 192 ~~~~~--~~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 192 LSSPT--TGGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred cCccc--CCCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 87522 233569999999999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-26 Score=235.67 Aligned_cols=418 Identities=17% Similarity=0.192 Sum_probs=244.1
Q ss_pred hhHHHHHHHHhhccccCCCCcEEEEEeCCCCCCC-CchhhHhHHHHHHHHhcCcccccccceEEEec-ceeeEEEEEeCH
Q 004205 17 YIFYLLVGVFLAENNICFSAKVYVVYMGTTTGED-PLDVWRQHHQMLAVVHAGSMEQAQASHVYSYK-HGFRGFAAKLTD 94 (768)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~yiV~l~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~-~~~~g~s~~~~~ 94 (768)
.+++|++....+....+...+.|+|+|++....+ ..++..+| .+.. +.. -....-.|+|. ..+--..-+-+.
T Consensus 12 ~fl~lf~~~~gag~~~~vftnhflv~l~~g~g~~~ah~va~~h-gf~n----rg~-~~a~d~eyhf~h~~l~har~rrsl 85 (629)
T KOG3526|consen 12 VFLSLFCVMIGAGEAVDVFTNHFLVHLKEGGGLEDAHRVAKRH-GFIN----RGQ-VAASDNEYHFVHPALVHARTRRSL 85 (629)
T ss_pred HHHHHHHHHhccccCcceeeeeEEEEEeccCChHHHHHHHHHh-Cccc----ccc-ccccCceeeeeccccchhhhhccc
Confidence 3333333333444555677899999999985332 11111111 1110 000 01112234433 222111222233
Q ss_pred HHHHHHhcCCCeEEEEecceeccCC------------------CCCcccc------ccc--ccCCCCcCCCCCCCCcceE
Q 004205 95 QQASQIAQMPGVVSVFPNMKRRLHT------------------THSWDFM------GLM--GEESMEIPGFSTKNQVNII 148 (768)
Q Consensus 95 ~~~~~L~~~p~V~~V~~~~~~~~~~------------------~~s~~~~------g~~--~~~~~~~~~~~~~Gg~GV~ 148 (768)
..-.+|.++|.|+-+.+..-+.... +..|-+. |-. ..++.++|.++++| ++|+
T Consensus 86 ~h~~~l~~dp~v~~a~qq~gf~r~krgyrp~~~fd~~~~dplf~~qwylkntgqaggk~rldlnv~~awa~g~tg-knvt 164 (629)
T KOG3526|consen 86 GHHAKLHNDPEVKMALQQEGFDRKKRGYRPINEFDINMNDPLFTKQWYLKNTGQAGGKPRLDLNVAEAWALGYTG-KNVT 164 (629)
T ss_pred chhhhhccChhHhhhhhccccchhhccCCchhhhccccCCcccceeeeeecccccCCcccccccHHHHHhhcccC-CCce
Confidence 4456788888887766554443210 0111111 111 13466899999999 9999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCC--CCCCc
Q 004205 149 VGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRD--SSGHG 226 (768)
Q Consensus 149 VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D--~~gHG 226 (768)
++|+|.||||-|||++-. | .--..++|.. ++|.+++...| .+.||
T Consensus 165 taimddgvdymhpdlk~n------------------y-------naeasydfss--------ndpfpyprytddwfnshg 211 (629)
T KOG3526|consen 165 TAIMDDGVDYMHPDLKSN------------------Y-------NAEASYDFSS--------NDPFPYPRYTDDWFNSHG 211 (629)
T ss_pred EEeecCCchhcCcchhcc------------------c-------Cceeeccccc--------CCCCCCCcccchhhhccC
Confidence 999999999999999621 1 1112223322 22444444444 68999
Q ss_pred chhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHH-cCCcEEEeccCCCCCCC--C
Q 004205 227 SHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIR-DGVHILSLSLGPEAPQG--D 303 (768)
Q Consensus 227 THVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVIN~SlG~~~~~~--~ 303 (768)
|.|||-+++...+ +.+| .|||.+.++..+|+++. .+..|+++|-..-.+ ...+|.+-|||....+- +
T Consensus 212 trcagev~aardn--gicg------vgvaydskvagirmldq--pymtdlieansmghep~kihiysaswgptddgktvd 281 (629)
T KOG3526|consen 212 TRCAGEVVAARDN--GICG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVD 281 (629)
T ss_pred ccccceeeeeccC--Ccee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEecccCcCCCCcccC
Confidence 9999998876654 3466 79999999999999964 566777776433322 24789999999876321 1
Q ss_pred CchhHHHHHHHHhh-----cCCcEEEEeccCCCC--CC--CcccCCCceEEEcccCCCccceeeEEeCCCceEecccccc
Q 004205 304 YFSDAISIGSFHAT-----SRGILVVASAGNEGN--EG--SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSL 374 (768)
Q Consensus 304 ~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~--~~--~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 374 (768)
...++.-+|+.+-+ ..|-+.|.|.|..|. .. .-.+.+-|.|++-+.-.|.
T Consensus 282 gprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaindg--------------------- 340 (629)
T KOG3526|consen 282 GPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAINDG--------------------- 340 (629)
T ss_pred CchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcCC---------------------
Confidence 12233334444444 356799999999887 22 2224556777775432211
Q ss_pred cccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCC
Q 004205 375 CKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDV 454 (768)
Q Consensus 375 ~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~ 454 (768)
....+++.|..
T Consensus 341 -------------------~nahydescss-------------------------------------------------- 351 (629)
T KOG3526|consen 341 -------------------ENAHYDESCSS-------------------------------------------------- 351 (629)
T ss_pred -------------------ccccccchhhH--------------------------------------------------
Confidence 11122333321
Q ss_pred CccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEec
Q 004205 455 AIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWS 534 (768)
Q Consensus 455 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~ 534 (768)
..-+.||+-|..+ +- | +-.+-.
T Consensus 352 ---------------------------------------------tlastfsng~rnp--------et---g--vattdl 373 (629)
T KOG3526|consen 352 ---------------------------------------------TLASTFSNGGRNP--------ET---G--VATTDL 373 (629)
T ss_pred ---------------------------------------------HHHHHhhcCCcCC--------Cc---c--eeeecc
Confidence 2235677766544 11 2 212211
Q ss_pred CCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCC--c-cCCCCCCCCCCCccccccc
Q 004205 535 PAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKP--I-TVDPKGRRGNAFDYGSGFL 611 (768)
Q Consensus 535 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p--~-~~~~~~~~~~~~~~G~G~v 611 (768)
.+......||||.|+|-.||+.||.++++|.|+..+++.+-.-|.+........ . ..........+..||+|.+
T Consensus 374 ---yg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvl 450 (629)
T KOG3526|consen 374 ---YGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVL 450 (629)
T ss_pred ---ccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccc
Confidence 124567789999999999999999999999999999998877777653211100 0 0001234556778999999
Q ss_pred CccccCCCCeeecCCCcchhhhhhccC
Q 004205 612 NPRKVLSPGLIYDAQPIDYTVFLCSIG 638 (768)
Q Consensus 612 n~~~Al~~~l~~~~~~~~y~~~~~~~g 638 (768)
|+.+.+.-...|.+.++.| -|.-|
T Consensus 451 dagamv~lak~wktvppry---hc~ag 474 (629)
T KOG3526|consen 451 DAGAMVMLAKAWKTVPPRY---HCTAG 474 (629)
T ss_pred cHHHHHHHHHHhccCCCce---eeccc
Confidence 9988887666677777665 46655
|
|
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=240.48 Aligned_cols=274 Identities=28% Similarity=0.412 Sum_probs=196.7
Q ss_pred cCCCCcCCC--CCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccc
Q 004205 131 EESMEIPGF--STKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEE 208 (768)
Q Consensus 131 ~~~~~~~~~--~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~ 208 (768)
......|.. +.+| +||+|+|||+||+..||+|.+... .+ ..|.++..
T Consensus 127 ~~~~~~~~~~~~~~g-~gv~~~vid~gv~~~~~~~~~~~~--------------------------~~-~~~~~~~~--- 175 (508)
T COG1404 127 ISVGALVANGAGLTG-KGVTVAVIDTGVDASHPDLAGSAV--------------------------AG-GDFVDGDP--- 175 (508)
T ss_pred cccccccccccCCCC-CCeEEEEeccCCCCCChhhhcccc--------------------------cc-cccccCCC---
Confidence 345577887 8889 999999999999999999975321 00 12222100
Q ss_pred cccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCC-C-CCHHHHHHHHHHHHHc
Q 004205 209 DIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDS-G-CYDVDLLAAFDDAIRD 286 (768)
Q Consensus 209 ~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~-g-~~~~~i~~ai~~a~~~ 286 (768)
.....|..+|||||+|++++....+ .....|+||+++++.+|++... + ....+++++|+++++.
T Consensus 176 -------~~~~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 241 (508)
T COG1404 176 -------EPPFLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANL 241 (508)
T ss_pred -------CCCCCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhc
Confidence 0024688999999999999843111 1234899999999999999865 4 6677889999999999
Q ss_pred C--CcEEEeccCCCCCCCCCchhHHHHHHHHhhcCC-cEEEEeccCCCC-CC----CcccCC--CceEEEcccCCCccce
Q 004205 287 G--VHILSLSLGPEAPQGDYFSDAISIGSFHATSRG-ILVVASAGNEGN-EG----SVTNLA--PWMFTIAASSTDRDFT 356 (768)
Q Consensus 287 g--~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~-~~----~~~~~~--p~vitVgAs~~~~~~~ 356 (768)
+ +++||||+|.. ........+..++..+...| +++|+|+||.+. .. ..+... +.+++|+|..
T Consensus 242 ~~~~~~in~s~g~~--~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~------ 313 (508)
T COG1404 242 GGPADVINLSLGGS--LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD------ 313 (508)
T ss_pred CCCCcEEEecCCCC--ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC------
Confidence 9 99999999985 11133456667777877777 999999999987 21 122222 2455555421
Q ss_pred eeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHH
Q 004205 357 SEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVV 436 (768)
Q Consensus 357 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~ 436 (768)
T Consensus 314 -------------------------------------------------------------------------------- 313 (508)
T COG1404 314 -------------------------------------------------------------------------------- 313 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCC
Q 004205 437 KEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPE 516 (768)
Q Consensus 437 ~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~ 516 (768)
..+.++.||++|+..
T Consensus 314 -------------------------------------------------------------~~~~~~~~s~~g~~~---- 328 (508)
T COG1404 314 -------------------------------------------------------------LSDTVASFSNDGSPT---- 328 (508)
T ss_pred -------------------------------------------------------------CCCccccccccCCCC----
Confidence 125678899999741
Q ss_pred cccCceeeCCceEEE-----EecCCCCCcceEEeccccchhHHHHHHHHHHHHhCC-CCCHHHHHHHHHhhcccccCCCC
Q 004205 517 ILKPDVTAPGLNIIA-----AWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHP-SWSPSAIKSAIMTTATALDKNHK 590 (768)
Q Consensus 517 ~~KPDI~APG~~I~S-----a~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~lsp~~ik~~L~~TA~~~~~~g~ 590 (768)
..+++|||.+|.+ +++. ....|..++||||++|||+|++||+++.+| .+++.+++..+..++...
T Consensus 329 --~~~~~apg~~i~~~~~~~~~~~--~~~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~----- 399 (508)
T COG1404 329 --GVDIAAPGVNILSLSAVNTLPG--DGADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLT----- 399 (508)
T ss_pred --CcceeCCCccccccccceeeeC--CccceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccccc-----
Confidence 1299999999998 5543 112499999999999999999999999999 899999999988888730
Q ss_pred CccCCCCCCCCCCCcccccccCccccCC
Q 004205 591 PITVDPKGRRGNAFDYGSGFLNPRKVLS 618 (768)
Q Consensus 591 p~~~~~~~~~~~~~~~G~G~vn~~~Al~ 618 (768)
........++.|..+...+..
T Consensus 400 -------~~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 400 -------PLSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred -------cCCccccccccCccccccccc
Confidence 112233456667666655544
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-17 Score=179.69 Aligned_cols=101 Identities=23% Similarity=0.255 Sum_probs=80.9
Q ss_pred cceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHHc---CCcEEEeccCCCCCC-CCCchhHHHHHHHHhhcCCcEEEE
Q 004205 250 GARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRD---GVHILSLSLGPEAPQ-GDYFSDAISIGSFHATSRGILVVA 325 (768)
Q Consensus 250 ~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~~---g~dVIN~SlG~~~~~-~~~~~~~~~~a~~~a~~~Gi~vV~ 325 (768)
.+.||||+|+|+.|++.++. ...++.++.+++.+ +++|||||||..... ...+...++.++.+|..+||+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 45899999999999997542 45678888888887 999999999987511 011336778888899999999999
Q ss_pred eccCCCC-CC-----------CcccCCCceEEEcccCCCc
Q 004205 326 SAGNEGN-EG-----------SVTNLAPWMFTIAASSTDR 353 (768)
Q Consensus 326 AAGN~g~-~~-----------~~~~~~p~vitVgAs~~~~ 353 (768)
||||+|. .. ..|+.+|++++||+++...
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 9999998 32 2478899999999987654
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-10 Score=109.84 Aligned_cols=109 Identities=19% Similarity=0.303 Sum_probs=86.1
Q ss_pred cccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCC----ccceeeEEEechhhHH
Q 004205 396 PYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVA----IPFVIPSAVVGKKTGN 471 (768)
Q Consensus 396 ~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~----~~~~~p~~~i~~~~g~ 471 (768)
..+.+.|...++...+++|||+||+ +|.|.+.+|..+++++||.|+|++|+...... ....+|++.|++.+|+
T Consensus 30 lv~~g~g~~~d~~~~dv~GkIvL~~---rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~dG~ 106 (143)
T cd02133 30 LVDAGLGTPEDFEGKDVKGKIALIQ---RGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGE 106 (143)
T ss_pred EEEccCCchhccCCCCccceEEEEE---CCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHHHH
Confidence 3444566666777788999999998 57899999999999999999999998865421 1247899999999999
Q ss_pred HHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCC
Q 004205 472 KILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNA 512 (768)
Q Consensus 472 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 512 (768)
.|++++.+ .++|.+..+.. ....+.++.||||||..
T Consensus 107 ~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 107 ALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred HHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 99999987 44555444444 34567799999999963
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.3e-10 Score=102.94 Aligned_cols=115 Identities=34% Similarity=0.592 Sum_probs=90.9
Q ss_pred EEeCCCceEecccc---c--ccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCch-hHHHH
Q 004205 359 IVLGDGANFTGESL---S--LCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTE-SKLRK 432 (768)
Q Consensus 359 ~~~~~~~~~~g~~~---~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~-~~~~k 432 (768)
+.++|++.+.|+++ . .+|+++... .........|.+...+..+++|||+||+ ++.| .+.+|
T Consensus 2 i~LGng~~i~G~sl~~~~~~~~~~~~~~~----------~~~~~~~~~C~~~~~~~~~v~GkIVlc~---~~~~~~~~~k 68 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNLKTYPLVYKSA----------NSGDVDASLCLPGSLDPSKVKGKIVLCD---RGGNTSRVAK 68 (126)
T ss_pred EEeCCCCEEEEEEccCCCCCccceEeccC----------cCCCCccccCCCCCCChhhccccEEEEe---CCCCccHHHH
Confidence 67899999999998 2 345544211 0233455789998888899999999998 5668 89999
Q ss_pred HHHHHHcCceEEEEEcCCCCCC---CccceeeEEEechhhHHHHHHHHhccCccEEE
Q 004205 433 SMVVKEAGGVGMILVDEPGKDV---AIPFVIPSAVVGKKTGNKILSYISHTSKAISK 486 (768)
Q Consensus 433 ~~~~~~~Ga~g~i~~n~~~~~~---~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 486 (768)
..+++++||.|+|++++..... .....+|++.|..++|+.|++|++++.+++++
T Consensus 69 ~~~~~~~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 69 GDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred HHHHHHcCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999999999999998876552 22367999999999999999999987766554
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.7e-09 Score=87.90 Aligned_cols=78 Identities=29% Similarity=0.504 Sum_probs=56.7
Q ss_pred EEEEEeCCCCCCCCchhhHhHHHHHHHHhcCcc----cccccceEEEecceeeEEEEEeCHHHHHHHhcCCCeEEEEecc
Q 004205 38 VYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSM----EQAQASHVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNM 113 (768)
Q Consensus 38 ~yiV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~V~~~~ 113 (768)
+|||+|++.... ....+.|.+++.+++ .+. .....++.+.|...||||+++++++++++|+++|+|++|+||+
T Consensus 1 ~YIV~~k~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~ 77 (82)
T PF05922_consen 1 RYIVVFKDDASA--ASSFSSHKSWQASIL-KSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQ 77 (82)
T ss_dssp EEEEEE-TTSTH--HCHHHHHHHHHH-----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEEC
T ss_pred CEEEEECCCCCc--chhHHHHHHHHHHHH-hhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCc
Confidence 699999998532 113556677777554 211 3457899999999999999999999999999999999999999
Q ss_pred eeccC
Q 004205 114 KRRLH 118 (768)
Q Consensus 114 ~~~~~ 118 (768)
.++++
T Consensus 78 ~v~l~ 82 (82)
T PF05922_consen 78 VVSLH 82 (82)
T ss_dssp EEEE-
T ss_pred eEecC
Confidence 88763
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.6e-08 Score=88.80 Aligned_cols=87 Identities=22% Similarity=0.348 Sum_probs=62.1
Q ss_pred EEecCCCccEEEEEEEEecCCCceeEEEEEeC--------CCce-----------EEEEecCEEEEcCCCeEEEEEEEEE
Q 004205 669 ITVPNLKGNFSVTRSVTNVGKPRSIYKAVVSS--------PVGV-----------TVTVAPERLIFNSYGQKINFTVHFK 729 (768)
Q Consensus 669 ~~~~~~~~~~t~~~tv~N~~~~~~ty~~~~~~--------~~g~-----------~v~~~p~~~~~~~~~~~~~~~vt~~ 729 (768)
|+|+++....+++++|+|.|++..+|+++... ..|. .+...|..+++ ++|++++|+|+++
T Consensus 1 i~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~ 79 (112)
T PF06280_consen 1 ISLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTIT 79 (112)
T ss_dssp EEEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE
T ss_pred CCccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEE
Confidence 45677777789999999999999999998761 1111 56677888889 7999999999999
Q ss_pred ecC----CCCceEEEEEEEEcC-ce-EEEEEEE
Q 004205 730 LTS----PPKGYGFGYLSWKNG-KL-RVTSPLV 756 (768)
Q Consensus 730 ~~~----~~~~~~~G~i~~~~~-~~-~v~~P~~ 756 (768)
++. ..+.+++|||.|++. ++ .+++||+
T Consensus 80 ~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 80 PPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp --GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 853 447899999999975 44 8999996
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=87.61 Aligned_cols=84 Identities=18% Similarity=0.289 Sum_probs=71.0
Q ss_pred CCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC-----C-C--ccceeeEEEechhhH
Q 004205 399 SSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD-----V-A--IPFVIPSAVVGKKTG 470 (768)
Q Consensus 399 ~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~-----~-~--~~~~~p~~~i~~~~g 470 (768)
...|.+..++..+++|||+||+ ||.|.|.+|..+++++||.++|++|+.... . . ....+|+++|++.+|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~---rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G 105 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVD---RGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAG 105 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEE---CCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHH
Confidence 4679988888789999999999 688999999999999999999999987742 1 1 234699999999999
Q ss_pred HHHHHHHhccCccEE
Q 004205 471 NKILSYISHTSKAIS 485 (768)
Q Consensus 471 ~~l~~~~~~~~~~~~ 485 (768)
+.|++++.++.+.++
T Consensus 106 ~~l~~~l~~g~~v~~ 120 (122)
T cd04816 106 AALRRRLGAGETLEL 120 (122)
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999988765444
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-07 Score=87.49 Aligned_cols=86 Identities=10% Similarity=0.122 Sum_probs=72.0
Q ss_pred cCCccCcCCC--CCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCC-CC----CC--ccceeeEEEechh
Q 004205 398 QSSYCLESSL--NSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPG-KD----VA--IPFVIPSAVVGKK 468 (768)
Q Consensus 398 ~~~~c~~~~~--~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~-~~----~~--~~~~~p~~~i~~~ 468 (768)
....|.+... +..++.|+|+|++ ||+|.|.+|..+++++||.++|+||+.. .. +. ....+|+++|+..
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~---RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~ 119 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQ---RGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNP 119 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEE---CCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHH
Confidence 3567998776 5678999999999 6899999999999999999999999886 21 12 2346899999999
Q ss_pred hHHHHHHHHhccCccEEE
Q 004205 469 TGNKILSYISHTSKAISK 486 (768)
Q Consensus 469 ~g~~l~~~~~~~~~~~~~ 486 (768)
+|+.|+.++.++.+.+++
T Consensus 120 ~G~~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 120 KGMEILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHHHHcCCcEEEe
Confidence 999999999888766554
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.5e-07 Score=98.17 Aligned_cols=158 Identities=18% Similarity=0.112 Sum_probs=100.2
Q ss_pred CCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCcccccccc
Q 004205 132 ESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIV 211 (768)
Q Consensus 132 ~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~ 211 (768)
+....|..+++| .++.|+|.|.|++..||+.... ....+..++....+.
T Consensus 21 ~v~~~~~~~~~g-~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~~~~~----- 69 (431)
T KOG3525|consen 21 NVQNAWCKGYTG-TRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNRHDND----- 69 (431)
T ss_pred eeeeccccCCCC-CceEEEEeeccccccCcccccc-------------------------cCcceeEeeecCCCC-----
Confidence 466899999999 9999999999999999998632 122333333322111
Q ss_pred ccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHH-cCCcE
Q 004205 212 ETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIR-DGVHI 290 (768)
Q Consensus 212 ~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dV 290 (768)
+.+-.+....+.|||-||+-.+...++. ..+ .|+++++++..++++.. ...+...+...... .-+++
T Consensus 70 -p~~~~~~~~~~~~g~~Ca~~~a~~~~~~--~C~------vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~~di 137 (431)
T KOG3525|consen 70 -PEPRCDGTNENKHGTRCAGCVAARANNL--TCG------VGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCHIDI 137 (431)
T ss_pred -cccccCCCCccccCCCCCcccccccCCC--cCC------CCcccCccccceeeeee---ecccceecccccCCCCCcee
Confidence 2221223346889999999999876322 122 79999999999999852 11122233222222 23789
Q ss_pred EEeccCCCCCCC--CCchhHHHHHHHHh-----hcCCcEEEEeccCCCC
Q 004205 291 LSLSLGPEAPQG--DYFSDAISIGSFHA-----TSRGILVVASAGNEGN 332 (768)
Q Consensus 291 IN~SlG~~~~~~--~~~~~~~~~a~~~a-----~~~Gi~vV~AAGN~g~ 332 (768)
-+.|||....+. +........+...+ ..+|-+.++|.||.|.
T Consensus 138 ~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~ 186 (431)
T KOG3525|consen 138 YSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGT 186 (431)
T ss_pred ecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccc
Confidence 999999775221 11112233333333 3678899999999886
|
|
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.2e-07 Score=84.26 Aligned_cols=79 Identities=19% Similarity=0.221 Sum_probs=68.0
Q ss_pred cCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC-----C--CccceeeEEEechhhH
Q 004205 398 QSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD-----V--AIPFVIPSAVVGKKTG 470 (768)
Q Consensus 398 ~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~-----~--~~~~~~p~~~i~~~~g 470 (768)
....|.+.++...+++|||+|++ ||+|+|.+|..+++++||.++|++|+.... . .....+|+++|++++|
T Consensus 29 ~~~gC~~~~~~~~~l~gkIaLV~---RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG 105 (120)
T cd02129 29 SSVLCSASDVPPGGLKGKAVVVM---RGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDM 105 (120)
T ss_pred CcCCCCccccCccccCCeEEEEE---CCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHH
Confidence 34679998888888999999999 689999999999999999999999988742 1 1345689999999999
Q ss_pred HHHHHHHhc
Q 004205 471 NKILSYISH 479 (768)
Q Consensus 471 ~~l~~~~~~ 479 (768)
+.|++.+.+
T Consensus 106 ~~i~~~l~~ 114 (120)
T cd02129 106 LDIQQTFGD 114 (120)
T ss_pred HHHHHHhcc
Confidence 999998764
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.6e-07 Score=83.34 Aligned_cols=85 Identities=22% Similarity=0.260 Sum_probs=70.3
Q ss_pred CCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC----C-------CccceeeEEEech
Q 004205 399 SSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD----V-------AIPFVIPSAVVGK 467 (768)
Q Consensus 399 ~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~----~-------~~~~~~p~~~i~~ 467 (768)
...|.+.. +..+++|||+|++ ||+|.|.+|..+++++||.++|+||+.... + .....+|+++|++
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~---RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~ 96 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIE---RGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLG 96 (118)
T ss_pred cccCCCCC-CccccCCeEEEEE---CCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecH
Confidence 46798644 3567999999999 689999999999999999999999976542 1 1235799999999
Q ss_pred hhHHHHHHHHhccCccEEEE
Q 004205 468 KTGNKILSYISHTSKAISKI 487 (768)
Q Consensus 468 ~~g~~l~~~~~~~~~~~~~i 487 (768)
.+|+.|++.+..+..+++.|
T Consensus 97 ~dG~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 97 KNGYMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHHHHcCCceEEee
Confidence 99999999999888776654
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.8e-08 Score=85.12 Aligned_cols=78 Identities=24% Similarity=0.439 Sum_probs=64.0
Q ss_pred ccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC-------CCccceeeEEEechhh
Q 004205 397 YQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD-------VAIPFVIPSAVVGKKT 469 (768)
Q Consensus 397 ~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~-------~~~~~~~p~~~i~~~~ 469 (768)
.....|.+......+++|||+||+ ||.|+|.+|+.+++++||.|+|++|..... ......+|+++|+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~gkIvlv~---rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~ 93 (101)
T PF02225_consen 17 IDEGDCCPSDYNGSDVKGKIVLVE---RGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYED 93 (101)
T ss_dssp EECCHHHHHHTSTSTCTTSEEEEE---STSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHH
T ss_pred CCcccccccccCCccccceEEEEe---cCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHH
Confidence 345667888888999999999998 799999999999999999999999922221 2345789999999999
Q ss_pred HHHHHHHH
Q 004205 470 GNKILSYI 477 (768)
Q Consensus 470 g~~l~~~~ 477 (768)
|+.|++|+
T Consensus 94 g~~L~~~i 101 (101)
T PF02225_consen 94 GEALLAYI 101 (101)
T ss_dssp HHHHHHHH
T ss_pred HhhhhccC
Confidence 99999985
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.8e-07 Score=82.47 Aligned_cols=84 Identities=11% Similarity=0.182 Sum_probs=68.6
Q ss_pred CCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCC-CC------CCccceeeEEEechhhHH
Q 004205 399 SSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPG-KD------VAIPFVIPSAVVGKKTGN 471 (768)
Q Consensus 399 ~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~-~~------~~~~~~~p~~~i~~~~g~ 471 (768)
...|.+..+ +.+++|||+|++ ||.|.|.+|..+++++||.++|+||+.. .. ......+|++.|+.++|+
T Consensus 31 ~~gC~~~~~-~~~~~gkIvlv~---rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~ 106 (122)
T cd02130 31 NLGCDAADY-PASVAGNIALIE---RGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGK 106 (122)
T ss_pred CCCCCcccC-CcCCCCEEEEEE---CCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHH
Confidence 446887655 357999999999 6889999999999999999999998873 32 112457999999999999
Q ss_pred HHHHHHhccCccEEE
Q 004205 472 KILSYISHTSKAISK 486 (768)
Q Consensus 472 ~l~~~~~~~~~~~~~ 486 (768)
.|+..+.++.+.+++
T Consensus 107 ~L~~~l~~g~~v~~~ 121 (122)
T cd02130 107 ALVAALANGGEVSAN 121 (122)
T ss_pred HHHHHHhcCCcEEEe
Confidence 999999887765543
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.7e-07 Score=81.60 Aligned_cols=85 Identities=13% Similarity=0.241 Sum_probs=69.4
Q ss_pred ccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC--C-----CccceeeEEEechhh
Q 004205 397 YQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD--V-----AIPFVIPSAVVGKKT 469 (768)
Q Consensus 397 ~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~--~-----~~~~~~p~~~i~~~~ 469 (768)
.....|.+.... .+++|||+||+ |+.|.+.+|..+++++||.|+|++|+.... . .....+|++.|++++
T Consensus 25 ~~~~~C~~~~~~-~~v~GkIvL~~---rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~ 100 (118)
T cd04818 25 SNTDGCTAFTNA-AAFAGKIALID---RGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQAD 100 (118)
T ss_pred CcccccCCCCcC-CCCCCEEEEEE---CCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHH
Confidence 345679887763 46999999998 577999999999999999999999887753 1 123579999999999
Q ss_pred HHHHHHHHhccCccEE
Q 004205 470 GNKILSYISHTSKAIS 485 (768)
Q Consensus 470 g~~l~~~~~~~~~~~~ 485 (768)
|+.|++|+..+...++
T Consensus 101 g~~l~~~l~~g~~v~v 116 (118)
T cd04818 101 GDALKAALAAGGTVTV 116 (118)
T ss_pred HHHHHHHHhcCCcEEE
Confidence 9999999987765444
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.1e-07 Score=82.25 Aligned_cols=83 Identities=22% Similarity=0.306 Sum_probs=67.2
Q ss_pred CCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC------------CC---ccceeeEE
Q 004205 399 SSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD------------VA---IPFVIPSA 463 (768)
Q Consensus 399 ~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~------------~~---~~~~~p~~ 463 (768)
...|.+... +.+++|||+|++ ||+|+|.+|..+++++||.++|++|+.... .. ....+|++
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~---RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v 102 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIME---RGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVV 102 (126)
T ss_pred hhcccCCCC-ccccCceEEEEE---CCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEE
Confidence 467987554 557899999999 689999999999999999999999866541 01 23579999
Q ss_pred EechhhHHHHHHHHhccCccEE
Q 004205 464 VVGKKTGNKILSYISHTSKAIS 485 (768)
Q Consensus 464 ~i~~~~g~~l~~~~~~~~~~~~ 485 (768)
+|+..+|+.|+..+..+...++
T Consensus 103 ~I~~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 103 FLFSKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred EEEHHHHHHHHHHHHhCCceEE
Confidence 9999999999999987655443
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-06 Score=104.19 Aligned_cols=97 Identities=15% Similarity=0.233 Sum_probs=60.1
Q ss_pred CcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHHcC-CcEEEeccCCCC-CCCCC--chhHHHHHHHHhhcCCcEEE
Q 004205 249 GGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDG-VHILSLSLGPEA-PQGDY--FSDAISIGSFHATSRGILVV 324 (768)
Q Consensus 249 g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~~g-~dVIN~SlG~~~-~~~~~--~~~~~~~a~~~a~~~Gi~vV 324 (768)
+..+-+||+|+|..|-.- .........|+..-...= --+|-.||+... ..+.+ .-+.+..-...|..+||.++
T Consensus 286 E~s~A~AP~A~I~lvvap---~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~ 362 (1174)
T COG4934 286 EWSHAMAPKANIDLVVAP---NPLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIF 362 (1174)
T ss_pred hhhhccCccCceEEEEcC---CCceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEE
Confidence 344679999999988772 122222333333222211 133445666533 12222 33556666678889999999
Q ss_pred EeccCCCC-CC--------CcccCCCceEEEcc
Q 004205 325 ASAGNEGN-EG--------SVTNLAPWMFTIAA 348 (768)
Q Consensus 325 ~AAGN~g~-~~--------~~~~~~p~vitVgA 348 (768)
+|+|.+|. .. ..|+.+|++.+||.
T Consensus 363 AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 363 AASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999987 32 34678999999996
|
|
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-06 Score=82.13 Aligned_cols=72 Identities=19% Similarity=0.299 Sum_probs=60.6
Q ss_pred CCCCCCCCCeEEEEeecCCCchh-----HHHHHHHHHHcCceEEEEEcCC--CCC----CCc---cceeeEEEechhhHH
Q 004205 406 SLNSTKARGKVLVCRHAESSTES-----KLRKSMVVKEAGGVGMILVDEP--GKD----VAI---PFVIPSAVVGKKTGN 471 (768)
Q Consensus 406 ~~~~~~~~gkivl~~~~~~g~~~-----~~~k~~~~~~~Ga~g~i~~n~~--~~~----~~~---~~~~p~~~i~~~~g~ 471 (768)
++...+++|||+|++ ||.|. |.+|.++++++||.++|+||+. .+. +.+ ..++|+++|++++|+
T Consensus 49 d~~~~d~~GkIaLI~---RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~ 125 (139)
T cd04817 49 SYICGGMAGKICLIE---RGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQ 125 (139)
T ss_pred cccCCCcCccEEEEE---CCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHH
Confidence 445668999999999 68899 9999999999999999999998 442 121 458999999999999
Q ss_pred HHHHHHhcc
Q 004205 472 KILSYISHT 480 (768)
Q Consensus 472 ~l~~~~~~~ 480 (768)
.|+..+...
T Consensus 126 ~L~~~l~~~ 134 (139)
T cd04817 126 ALLAALGQS 134 (139)
T ss_pred HHHHHhcCC
Confidence 999988543
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-06 Score=82.56 Aligned_cols=81 Identities=12% Similarity=0.309 Sum_probs=67.0
Q ss_pred CCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC--CC-------ccceeeEEEechhh
Q 004205 399 SSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD--VA-------IPFVIPSAVVGKKT 469 (768)
Q Consensus 399 ~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~--~~-------~~~~~p~~~i~~~~ 469 (768)
...|.+.. .+++|||+|++ ||+|.|.+|..+++++||.++|+||+.... +. ....+|+++|++.+
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~---RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~ 121 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVE---RGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSA 121 (139)
T ss_pred ccccCCCC---cccCCeEEEEE---CCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHH
Confidence 46798754 37899999999 689999999999999999999999877543 10 13579999999999
Q ss_pred HHHHHHHHhccCccEE
Q 004205 470 GNKILSYISHTSKAIS 485 (768)
Q Consensus 470 g~~l~~~~~~~~~~~~ 485 (768)
|+.|++++.++...++
T Consensus 122 G~~L~~~l~~g~~Vtv 137 (139)
T cd02132 122 GDALNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHHHHcCCcEEE
Confidence 9999999988765443
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-06 Score=80.98 Aligned_cols=85 Identities=16% Similarity=0.212 Sum_probs=70.1
Q ss_pred ccCCccCcCC--CCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC---C------CccceeeEEEe
Q 004205 397 YQSSYCLESS--LNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD---V------AIPFVIPSAVV 465 (768)
Q Consensus 397 ~~~~~c~~~~--~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~---~------~~~~~~p~~~i 465 (768)
.....|.+.. +...+++|||+||+ +|.|.+.+|..+++++||.|+|++++.... . .....+|++.|
T Consensus 28 ~~~~~C~~~~~~~~~~~~~GkIvl~~---~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~i 104 (126)
T cd00538 28 GPLVGCGYGTTDDSGADVKGKIVLVR---RGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGI 104 (126)
T ss_pred cceEEEecCcccccCCCccceEEEEE---CCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEe
Confidence 4456788776 67788999999998 577999999999999999999999887642 1 13457999999
Q ss_pred chhhHHHHHHHHhccCccE
Q 004205 466 GKKTGNKILSYISHTSKAI 484 (768)
Q Consensus 466 ~~~~g~~l~~~~~~~~~~~ 484 (768)
+.++|+.|+.++.++.+..
T Consensus 105 s~~~g~~l~~~~~~~~~v~ 123 (126)
T cd00538 105 SYADGEALLSLLEAGKTVT 123 (126)
T ss_pred CHHHHHHHHHHHhcCCceE
Confidence 9999999999998765443
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=80.51 Aligned_cols=84 Identities=13% Similarity=0.148 Sum_probs=66.8
Q ss_pred cCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCC----CccceeeEEEechhhHHHH
Q 004205 398 QSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDV----AIPFVIPSAVVGKKTGNKI 473 (768)
Q Consensus 398 ~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~----~~~~~~p~~~i~~~~g~~l 473 (768)
....|.+...+..+++|||+|++ ||+|.|.+|..+++++||.++|+||+..... .+...+|.+.+ +++|++|
T Consensus 40 ~~~gC~~~~~~~~~~~g~IaLv~---rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l 115 (129)
T cd02124 40 ADDACQPLPDDTPDLSGYIVLVR---RGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAW 115 (129)
T ss_pred CcccCcCCCcccccccCeEEEEE---CCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHH
Confidence 34679887666568999999999 6789999999999999999999998876542 22334566666 9999999
Q ss_pred HHHHhccCccEE
Q 004205 474 LSYISHTSKAIS 485 (768)
Q Consensus 474 ~~~~~~~~~~~~ 485 (768)
++.+..+...++
T Consensus 116 ~~~l~~G~~vtv 127 (129)
T cd02124 116 IDALAAGSNVTV 127 (129)
T ss_pred HHHHhcCCeEEE
Confidence 999987765443
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-06 Score=80.21 Aligned_cols=85 Identities=21% Similarity=0.252 Sum_probs=67.8
Q ss_pred CCccCcCCCC--CC----CCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC---C-----------Cccc
Q 004205 399 SSYCLESSLN--ST----KARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD---V-----------AIPF 458 (768)
Q Consensus 399 ~~~c~~~~~~--~~----~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~---~-----------~~~~ 458 (768)
.+.|.+.... +. ...+||+|++ ||+|.|.+|..+++++||.++|++|+.... + ....
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~---RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i 98 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLD---RGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKI 98 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEE---CCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCc
Confidence 4678876442 22 3788999999 689999999999999999999999987653 1 1123
Q ss_pred eeeEEEechhhHHHHHHHHhccCccEEE
Q 004205 459 VIPSAVVGKKTGNKILSYISHTSKAISK 486 (768)
Q Consensus 459 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 486 (768)
.+|+++|+..+|+.|++.+.++....++
T Consensus 99 ~IP~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 99 TIPSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred eEeEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 6999999999999999999887765543
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=79.11 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=64.8
Q ss_pred ccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC----C-----CccceeeEEEech
Q 004205 397 YQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD----V-----AIPFVIPSAVVGK 467 (768)
Q Consensus 397 ~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~----~-----~~~~~~p~~~i~~ 467 (768)
.....|.+. +..+++|||+|++ ||+|+|.+|..+++++||.++|++|+.... + .....+|++++++
T Consensus 25 ~p~~gC~~~--~~~~l~gkIvLV~---RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~ 99 (117)
T cd04813 25 SPTDACSLQ--EHAEIDGKVALVL---RGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSR 99 (117)
T ss_pred CCCCCCCCC--CcCCcCCeEEEEE---CCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcH
Confidence 345679766 5578999999999 689999999999999999999999877642 1 1234799999999
Q ss_pred hhHHHHHHHHhc
Q 004205 468 KTGNKILSYISH 479 (768)
Q Consensus 468 ~~g~~l~~~~~~ 479 (768)
+++++|+.++..
T Consensus 100 ~~g~~L~~l~~~ 111 (117)
T cd04813 100 TSYHLLSSLLPK 111 (117)
T ss_pred HHHHHHHHhccc
Confidence 999999988754
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.2e-06 Score=80.13 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=67.9
Q ss_pred CCccCcCCCCC---CCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC---C-C-----ccceeeEEEec
Q 004205 399 SSYCLESSLNS---TKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD---V-A-----IPFVIPSAVVG 466 (768)
Q Consensus 399 ~~~c~~~~~~~---~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~---~-~-----~~~~~p~~~i~ 466 (768)
...|.+....+ .++.|||+|++ ||+|+|.+|..+++++||.++|++|+.... + . ....+|+++|+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~---RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is 126 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIR---RGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVG 126 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEE---CCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEee
Confidence 45788766544 78999999999 689999999999999999999999987653 1 1 13589999999
Q ss_pred hhhHHHHHHHHhccCc
Q 004205 467 KKTGNKILSYISHTSK 482 (768)
Q Consensus 467 ~~~g~~l~~~~~~~~~ 482 (768)
..+|+.|+.++.....
T Consensus 127 ~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 127 KSTGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 9999999999987654
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.8e-05 Score=71.28 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=62.4
Q ss_pred ccCcCCCCCCCCCCeEEEEeecCCCch--hHHHHHHHHHHcCceEEEEEcCCCCCCC----------ccceeeEEEechh
Q 004205 401 YCLESSLNSTKARGKVLVCRHAESSTE--SKLRKSMVVKEAGGVGMILVDEPGKDVA----------IPFVIPSAVVGKK 468 (768)
Q Consensus 401 ~c~~~~~~~~~~~gkivl~~~~~~g~~--~~~~k~~~~~~~Ga~g~i~~n~~~~~~~----------~~~~~p~~~i~~~ 468 (768)
.+.+.++...+++|||+|++ ++.+ .+.+|..+++++||.|+|++|+...... ....+|++.|+.+
T Consensus 32 ~G~~~d~~~~~v~GkIvlv~---~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~e 108 (127)
T cd04819 32 YGLPKDFDGLDLEGKIAVVK---RDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGE 108 (127)
T ss_pred CCCHHHcCCCCCCCeEEEEE---cCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHH
Confidence 33334455667999999999 4667 8899999999999999999987766411 1346999999999
Q ss_pred hHHHHHHHHhccC
Q 004205 469 TGNKILSYISHTS 481 (768)
Q Consensus 469 ~g~~l~~~~~~~~ 481 (768)
||+.|+..++.+.
T Consensus 109 dg~~L~~~l~~g~ 121 (127)
T cd04819 109 DGLRLARVAERND 121 (127)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999987643
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0017 Score=60.80 Aligned_cols=75 Identities=9% Similarity=0.109 Sum_probs=59.0
Q ss_pred CCCCCCCeEEEEeecCCCch------hHHHH-------HHHHHHcCceEEEEEcCCCC-------C-C---CccceeeEE
Q 004205 408 NSTKARGKVLVCRHAESSTE------SKLRK-------SMVVKEAGGVGMILVDEPGK-------D-V---AIPFVIPSA 463 (768)
Q Consensus 408 ~~~~~~gkivl~~~~~~g~~------~~~~k-------~~~~~~~Ga~g~i~~n~~~~-------~-~---~~~~~~p~~ 463 (768)
+..+++|||+++. ++.| .|..| ...++++||.++|++|.... . . .....+|++
T Consensus 34 ~~~~v~GKIvlv~---~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v 110 (134)
T cd04815 34 PAGAVKGKIVFFN---QPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAA 110 (134)
T ss_pred chhhcCCeEEEec---CCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEE
Confidence 4568999999998 5778 88887 68999999999999985422 1 1 112459999
Q ss_pred EechhhHHHHHHHHhccCccEE
Q 004205 464 VVGKKTGNKILSYISHTSKAIS 485 (768)
Q Consensus 464 ~i~~~~g~~l~~~~~~~~~~~~ 485 (768)
.|+.+|+..|...+..+..+.+
T Consensus 111 ~is~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 111 AISVEDADMLERLAARGKPIRV 132 (134)
T ss_pred EechhcHHHHHHHHhCCCCeEE
Confidence 9999999999999887654443
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00095 Score=65.17 Aligned_cols=68 Identities=21% Similarity=0.303 Sum_probs=55.1
Q ss_pred CCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC--------------------------------CC-
Q 004205 409 STKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD--------------------------------VA- 455 (768)
Q Consensus 409 ~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~--------------------------------~~- 455 (768)
..+++|||+|++ +|.|.+.+|+.+++++||.|+|+|++.... ..
T Consensus 51 gv~v~GkIvLvr---~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~ 127 (183)
T cd02128 51 GVSVNGSVVLVR---AGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPP 127 (183)
T ss_pred CCCCCCeEEEEE---CCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCc
Confidence 568999999999 578999999999999999999999884110 00
Q ss_pred ----ccceeeEEEechhhHHHHHHHHhc
Q 004205 456 ----IPFVIPSAVVGKKTGNKILSYISH 479 (768)
Q Consensus 456 ----~~~~~p~~~i~~~~g~~l~~~~~~ 479 (768)
.--.||+..|+..++..|++.+.-
T Consensus 128 ~~~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 128 SQSSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred ccccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 012488999999999999998753
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.067 Score=47.33 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=63.7
Q ss_pred CccEEEEEEEEecCCCceeEEEEEeCCCceEEEEecCEEEEcCCCeEEEEEEEEEecCCCCceEEEEEEEEcCceEEEEE
Q 004205 675 KGNFSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLTSPPKGYGFGYLSWKNGKLRVTSP 754 (768)
Q Consensus 675 ~~~~t~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~i~~~~~~~~v~~P 754 (768)
....+.+++|+|.+.....|++.......-.++++|..-.+ ++|++.++.|+|.+.. ..+.+++.|.+.-++..+.+|
T Consensus 19 g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~-~~g~~~~~l~i~~e~~~~~i~ 96 (102)
T PF14874_consen 19 GQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK-PLGDYEGSLVITTEGGSFEIP 96 (102)
T ss_pred CCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC-CCceEEEEEEEEECCeEEEEE
Confidence 45667778999999999999997644234557777776666 7899999999999533 345688999988777788888
Q ss_pred EEEEE
Q 004205 755 LVVQV 759 (768)
Q Consensus 755 ~~~~~ 759 (768)
+-+.+
T Consensus 97 v~a~~ 101 (102)
T PF14874_consen 97 VKAEV 101 (102)
T ss_pred EEEEE
Confidence 87653
|
|
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.011 Score=64.47 Aligned_cols=79 Identities=15% Similarity=0.270 Sum_probs=65.3
Q ss_pred CCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC---------CCccceeeEEEechhhHHHHHHHHhc
Q 004205 409 STKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD---------VAIPFVIPSAVVGKKTGNKILSYISH 479 (768)
Q Consensus 409 ~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~---------~~~~~~~p~~~i~~~~g~~l~~~~~~ 479 (768)
...++||++++. ||+|.|.+|.+.++++||.++++.|+.... ...+..||+++|++.+++.+.+...+
T Consensus 91 ~~kl~~~~~~v~---RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~ 167 (541)
T KOG2442|consen 91 QSKLSGKVALVF---RGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRS 167 (541)
T ss_pred CccccceeEEEe---cccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhcc
Confidence 456899999999 799999999999999999999999995443 22356799999999999999987777
Q ss_pred cCccEEEEecC
Q 004205 480 TSKAISKIFPA 490 (768)
Q Consensus 480 ~~~~~~~i~~~ 490 (768)
+.+.++.+..+
T Consensus 168 ~~~V~~~lYaP 178 (541)
T KOG2442|consen 168 NDNVELALYAP 178 (541)
T ss_pred CCeEEEEEECC
Confidence 77666665544
|
|
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.017 Score=54.21 Aligned_cols=54 Identities=19% Similarity=0.192 Sum_probs=42.6
Q ss_pred CccCcCCCCCCCCCCeEEEEeecCCCch---------------hHHHHHHHHHHcCceEEEEEcCCCCC
Q 004205 400 SYCLESSLNSTKARGKVLVCRHAESSTE---------------SKLRKSMVVKEAGGVGMILVDEPGKD 453 (768)
Q Consensus 400 ~~c~~~~~~~~~~~gkivl~~~~~~g~~---------------~~~~k~~~~~~~Ga~g~i~~n~~~~~ 453 (768)
..|...++...|++|||+|+.++..... .+..|...+.++||.|+|++++....
T Consensus 34 ~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~~~ 102 (142)
T cd04814 34 PELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELAPA 102 (142)
T ss_pred CCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCCcc
Confidence 4577778888999999999985422110 47789999999999999999987643
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.038 Score=52.53 Aligned_cols=77 Identities=12% Similarity=0.134 Sum_probs=54.1
Q ss_pred CccCcCCCCCCCCCCeEEEEeecCC---------------CchhHHHHHHHHHHcCceEEEEEcCCCCCCCcccee----
Q 004205 400 SYCLESSLNSTKARGKVLVCRHAES---------------STESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVI---- 460 (768)
Q Consensus 400 ~~c~~~~~~~~~~~gkivl~~~~~~---------------g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~---- 460 (768)
..|...++...+++|||+|+.++.. .-|.+..|..++.++||.|+|++++...........
T Consensus 34 ~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~~~~~~~~~~~~~ 113 (151)
T cd04822 34 PELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNSHSGDADRLPRFG 113 (151)
T ss_pred cccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcccCcccccccccC
Confidence 4466667778899999999986531 116788999999999999999999876652222112
Q ss_pred --eEEEechhhHHHHHHH
Q 004205 461 --PSAVVGKKTGNKILSY 476 (768)
Q Consensus 461 --p~~~i~~~~g~~l~~~ 476 (768)
..+.++....+.+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 114 GTAPQRVDIAAADPWFTA 131 (151)
T ss_pred ccceEEechHHHHHHhhh
Confidence 2556666666666553
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.026 Score=52.65 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=41.4
Q ss_pred CccCcCCCCCCCCCCeEEEEeecCCCc---------hhHHHHHHHHHHcCceEEEEEcCCCC
Q 004205 400 SYCLESSLNSTKARGKVLVCRHAESST---------ESKLRKSMVVKEAGGVGMILVDEPGK 452 (768)
Q Consensus 400 ~~c~~~~~~~~~~~gkivl~~~~~~g~---------~~~~~k~~~~~~~Ga~g~i~~n~~~~ 452 (768)
..|...++...+++|||+|+.++.... ..+..|.+++.++||.|+|++++...
T Consensus 36 ~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 36 PELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred cCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 457777777889999999999542110 13778999999999999999998654
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.044 Score=55.50 Aligned_cols=54 Identities=20% Similarity=0.333 Sum_probs=42.8
Q ss_pred cccCCccCcCCCC-----CCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCC
Q 004205 396 PYQSSYCLESSLN-----STKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGK 452 (768)
Q Consensus 396 ~~~~~~c~~~~~~-----~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~ 452 (768)
.++...|...+++ ..+++|||+|++ +|.+.+.+|+.+++++||.|+|+|++...
T Consensus 49 lVyvnyG~~~D~~~L~~~gvdv~GKIvLvr---~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 49 LVYANYGSPEDFEYLEDLGIDVKGKIVIAR---YGGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred EEEcCCCcHHHHHHHhhcCCCCCCeEEEEE---CCCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 3445566655443 568999999998 56777889999999999999999998644
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.25 Score=41.44 Aligned_cols=56 Identities=25% Similarity=0.315 Sum_probs=36.0
Q ss_pred ccEEEEEEEEecCCCc-eeEEEEEeCCCceEEEEecCEEEEcCCCeEEEEEEEEEec
Q 004205 676 GNFSVTRSVTNVGKPR-SIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLT 731 (768)
Q Consensus 676 ~~~t~~~tv~N~~~~~-~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~ 731 (768)
...+++++|+|.|... ...++++..|.|-.+...|..+.--++|++++++++|+++
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp 61 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVP 61 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECC
Confidence 4578889999999755 4588888899998877888877633899999999999975
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.071 Score=50.13 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=35.8
Q ss_pred CCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCC
Q 004205 410 TKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGK 452 (768)
Q Consensus 410 ~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~ 452 (768)
.+++|||+|++ .|...+-.|++++++.||.|+|+|.+...
T Consensus 37 V~v~GkIvi~R---yG~~~RG~Kv~~A~~~GA~GviIYsDP~d 76 (153)
T cd02131 37 MNVTNQIALLK---LGQAPLLYKLSLLEEAGFGGVLLYVDPCD 76 (153)
T ss_pred CCccceEEEEe---ccCcchHHHHHHHHHCCCeEEEEecChhh
Confidence 67999999999 56788999999999999999999988643
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.25 Score=53.03 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=60.8
Q ss_pred CccCcCCC---CCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC-------CCccceeeEEEechhh
Q 004205 400 SYCLESSL---NSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD-------VAIPFVIPSAVVGKKT 469 (768)
Q Consensus 400 ~~c~~~~~---~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~-------~~~~~~~p~~~i~~~~ 469 (768)
++|.+... ........++|+. ||+|+|.+|+.+++++|..++|+||+.... ......++..+++...
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~---Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ 139 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIR---RGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFS 139 (348)
T ss_pred cccCccccCccCCCCCcceEEEEE---ccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeeh
Confidence 45766322 2345667889998 678999999999999999999999977765 2345678999999999
Q ss_pred HHHHHHHHhc
Q 004205 470 GNKILSYISH 479 (768)
Q Consensus 470 g~~l~~~~~~ 479 (768)
|+.|++|...
T Consensus 140 ge~l~~~~~~ 149 (348)
T KOG4628|consen 140 GELLSSYAGR 149 (348)
T ss_pred HHHHHHhhcc
Confidence 9999997543
|
|
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.18 Score=46.91 Aligned_cols=87 Identities=22% Similarity=0.192 Sum_probs=64.3
Q ss_pred cCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC---------CC----ccceeeEEE
Q 004205 398 QSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD---------VA----IPFVIPSAV 464 (768)
Q Consensus 398 ~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~---------~~----~~~~~p~~~ 464 (768)
....|.... +..+..|.++|++ ||+|+|..|..+++++||..+|+..+.... +. +...+|+.+
T Consensus 73 Pp~aC~elr-N~~f~~d~vaL~e---RGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~f 148 (193)
T KOG3920|consen 73 PPHACEELR-NEIFAPDSVALME---RGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVF 148 (193)
T ss_pred ChhHHHHHh-hcccCCCcEEEEe---cCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEE
Confidence 355676532 3456788999999 799999999999999999999998766654 22 245699999
Q ss_pred echhhHHHHHHHHhccCccEEEEe
Q 004205 465 VGKKTGNKILSYISHTSKAISKIF 488 (768)
Q Consensus 465 i~~~~g~~l~~~~~~~~~~~~~i~ 488 (768)
+-..+|-.++.-+..-.-+-+.|.
T Consensus 149 llg~~Gy~ir~sL~r~~r~ha~i~ 172 (193)
T KOG3920|consen 149 LLGVTGYYIRVSLKRYFRDHAKID 172 (193)
T ss_pred EeccceEEEehhHHHhCCccEEEe
Confidence 999888776666655554444444
|
|
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=91.35 E-value=5.5 Score=36.17 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=38.2
Q ss_pred EEEEEEEEecCCCceeEEEEEeCCCceEEEEecCEEEEcCCCeEEEEEEEEEec
Q 004205 678 FSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLT 731 (768)
Q Consensus 678 ~t~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~ 731 (768)
-.+++.|.|.+....+|++++..++|+++......+++ ++|++.++.|.+..+
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEEC
Confidence 46779999999999999999999889999665578888 789999999999875
|
|
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=90.25 E-value=2.5 Score=38.75 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=49.8
Q ss_pred CccEEEEEEEEecCCCceeEEEEEeC----CCce--------------------EEEEecCEEEEcCCCeEEEEEEEEEe
Q 004205 675 KGNFSVTRSVTNVGKPRSIYKAVVSS----PVGV--------------------TVTVAPERLIFNSYGQKINFTVHFKL 730 (768)
Q Consensus 675 ~~~~t~~~tv~N~~~~~~ty~~~~~~----~~g~--------------------~v~~~p~~~~~~~~~~~~~~~vt~~~ 730 (768)
...++++++|+|.+++..+|.+.+.. ..|+ -+++ |..+++ +++|+++++++++.
T Consensus 26 ~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKM 103 (121)
T ss_pred CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEc
Confidence 45789999999999999999997632 1221 1122 444777 78999999999997
Q ss_pred cCC-CCceEEEEEEEEc
Q 004205 731 TSP-PKGYGFGYLSWKN 746 (768)
Q Consensus 731 ~~~-~~~~~~G~i~~~~ 746 (768)
+.. -.+.+-|-|.|+.
T Consensus 104 P~~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 104 PKKAFDGIILGGIYFSE 120 (121)
T ss_pred CCCCcCCEEEeeEEEEe
Confidence 533 3566777777753
|
|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=81.53 E-value=2.1 Score=41.06 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=34.9
Q ss_pred CCCCCCCCCeEEEEeecCCCch----------------hHHHHHHHHHHcCceEEEEEcCCC
Q 004205 406 SLNSTKARGKVLVCRHAESSTE----------------SKLRKSMVVKEAGGVGMILVDEPG 451 (768)
Q Consensus 406 ~~~~~~~~gkivl~~~~~~g~~----------------~~~~k~~~~~~~Ga~g~i~~n~~~ 451 (768)
++...|++||||++..+..+.. ....|...+.+.||.|+|++++..
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 5667899999999985442211 234699999999999999997754
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 768 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-116 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 9e-96 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 6e-13 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 6e-12 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 7e-09 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 1e-08 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 1e-08 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 1e-08 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 3e-08 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 3e-08 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 3e-08 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 4e-08 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 4e-08 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 4e-08 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 4e-08 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 4e-08 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 6e-08 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 6e-08 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 6e-08 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 9e-08 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 9e-08 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 1e-07 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 1e-07 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 1e-07 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 1e-07 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 2e-07 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 2e-07 | ||
| 1xf1_A | 926 | Structure Of C5a Peptidase- A Key Virulence Factor | 2e-07 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 2e-07 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 3e-07 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 5e-07 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 5e-07 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 5e-07 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 5e-07 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 5e-07 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 6e-07 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 6e-07 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 1e-06 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 1e-06 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 2e-06 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 2e-06 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 2e-06 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 2e-06 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 2e-06 | ||
| 4dzt_A | 276 | Aqualysin I: The Crystal Structure Of A Serine Prot | 6e-06 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 1e-05 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 1e-05 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 1e-05 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 1e-05 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 1e-05 | ||
| 2b6n_A | 278 | The 1.8 A Crystal Structure Of A Proteinase K Like | 1e-05 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 1e-05 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 1e-05 | ||
| 1sel_A | 274 | Crystal Structure Of Selenosubtilisin At 2.0-Angstr | 4e-05 | ||
| 1v6c_A | 441 | Crystal Structure Of Psychrophilic Subtilisin-like | 5e-05 | ||
| 2gko_A | 309 | S41 Psychrophilic Protease Length = 309 | 4e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From Streptococcus Length = 926 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease From An Extreme Thermophile, Thermus Aquaticus Yt-1 Length = 276 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
| >pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme From A Psychrotroph Serratia Species Length = 278 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
| >pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms Resolution Length = 274 | Back alignment and structure |
|
| >pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441 | Back alignment and structure |
|
| >pdb|2GKO|A Chain A, S41 Psychrophilic Protease Length = 309 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 658 bits (1699), Expect = 0.0
Identities = 263/650 (40%), Positives = 367/650 (56%), Gaps = 44/650 (6%)
Query: 119 TTHSWDFMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQ 178
TT SWDF+G ++ N I+VG +DTGIWPESPSF D G P P KWKG
Sbjct: 1 TTRSWDFLGF--PLTVPRRSQVESN---IVVGVLDTGIWPESPSFDDEGFSPPPPKWKGT 55
Query: 179 CESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYV 238
CE+ F CNRK+IGAR Y G PRD++GHG+HTASTAAG V
Sbjct: 56 CETSNNFR---CNRKIIGARSYHIGRPISPG-----DVNGPRDTNGHGTHTASTAAGGLV 107
Query: 239 ANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPE 298
+ N GL G ARGG P+ARIA YK CW+ GC D D+LAA+DDAI DGV I+SLS+G
Sbjct: 108 SQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGA 167
Query: 299 APQGDYFSDAISIGSFHATSRGILVVASAGNEG-NEGSVTNLAPWMFTIAASSTDRDFTS 357
P+ YF DAI+IGSFHA RGIL SAGN G N + +L+PW+ ++AAS+ DR F +
Sbjct: 168 NPR-HYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVT 226
Query: 358 EIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVL 417
++ +G+G +F G S++ N ++S + F S +C + S+N +GK++
Sbjct: 227 QVQIGNGQSFQGVSINTFD-NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIV 285
Query: 418 VCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYI 477
VC + E K G +L+ +D A + +PS+V+ L YI
Sbjct: 286 VCEASFGPHE-------FFKSLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLATLRYI 338
Query: 478 SHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAV 537
+ IF + T+ + AP V +FSS+GPN +++KPD++ PG+ I+AAW
Sbjct: 339 YSIRSPGATIFKSTTI-LNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVA 397
Query: 538 G------KMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKP 591
FNI+SGTSM+CPH+TGIAT +K +P+WSP+AIKSA+MTTA+ ++ P
Sbjct: 398 PVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNP 457
Query: 592 ITVDPKGRRGNAFDYGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDN 651
F YGSG +NP K + PGL+YDA DY FLC GY+ +++ +T D
Sbjct: 458 QAE---------FAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDY 508
Query: 652 SKCSQ-KLPAPYDLNYPSITV---PNLKGNFSVTRSVTNVGKPRSIYKAVVSSPVGVTVT 707
S C+ +DLNYPS + P+ N R++T+V S Y+A++S+P G+T++
Sbjct: 509 SACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTIS 568
Query: 708 VAPERLIFNSYGQKINFTVHFKLTSPPKGYGFGYLSWKNGKLRVTSPLVV 757
V P L FN G + +FT+ + S L W +G V SP+ +
Sbjct: 569 VNPNVLSFNGLGDRKSFTLTVR-GSIKGFVVSASLVWSDGVHYVRSPITI 617
|
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 655 bits (1691), Expect = 0.0
Identities = 240/660 (36%), Positives = 357/660 (54%), Gaps = 39/660 (5%)
Query: 119 TTHSWDFMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQ 178
TTH+ DF+ L + ++ +IV +D+GIWPES SF D GMP P +WKG
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQD---VIVAVLDSGIWPESASFQDDGMPEIPKRWKGI 57
Query: 179 CESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYV 238
C+ G FNAS CNRK+IGA Y+ G A + ++ S RD+ GHG+H AS AG +
Sbjct: 58 CKPGTQFNASMCNRKLIGANYFNKGILANDP-TVNITMNSARDTDGHGTHCASITAGNFA 116
Query: 239 ANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPE 298
+++ G A G ARG AP AR+AVYK ++ G + DL+AA D A+ DGV ++S+S G
Sbjct: 117 KGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYR 176
Query: 299 APQGDYFSDAISIGSFHATSRGILVVASAGNEG-NEGSVTNLAPWMFTIAASSTDRDFTS 357
+ DAISI SF A +G+LV ASAGN G GS+ N +PW+ +A+ TDR F
Sbjct: 177 FI--PLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAG 234
Query: 358 EIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVL 417
+ LG+G G SL + + Y + S L ++
Sbjct: 235 TLTLGNGLKIRGWSLFPARAFVR----DSPVIYNKTLSDCSSEELLSQV---ENPENTIV 287
Query: 418 VCRHAESSTESKLRKSMVVKEAGGVGMILV-DEPGKDVAIPFVIPSAVVGKKTGNKILSY 476
+C ++ + ++ A I + ++PG + F P VV KK G ++++Y
Sbjct: 288 ICDDNGDFSD----QMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINY 343
Query: 477 ISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPA 536
+ ++ + I +T L ++PAP VAA S++GP+ I KPD+ APG+ I+AA+ P
Sbjct: 344 VKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPN 403
Query: 537 VG----------KMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALD 586
V + + SGTSMA PH GIA ++KA HP WSPSAI+SA+MTTA LD
Sbjct: 404 VFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLD 463
Query: 587 KNHKPITVDPKGRRGNAFDYGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGYDEKSLHL 646
KPI + D G+G ++P + L PGL+YDA P DY LCS+ + E+
Sbjct: 464 NTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKT 523
Query: 647 VTRDNSKCSQKLPAPYDLNYPS-ITVPNLKGNFSV-----TRSVTNVGKPRSIYKAVVSS 700
+ R ++ + P DLNYPS I + +++GNF++ R+VTNVGK + YKA + +
Sbjct: 524 IARSSASHNCSNP-SADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKA 582
Query: 701 PVGVTVTVAPERLIFNSYGQKINFTVHFKLTSPP-KGYGFGYLSWK--NGKLRVTSPLVV 757
P T++V+P+ L+F + +K ++T+ + + G ++W NG V SP+V
Sbjct: 583 PKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVT 642
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 464 bits (1195), Expect = e-151
Identities = 119/637 (18%), Positives = 213/637 (33%), Gaps = 101/637 (15%)
Query: 147 IIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFN----ASSCNRKVIGARYYMS 202
+V ID G ++ A + K E + + N KV Y
Sbjct: 19 TVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSK 78
Query: 203 GYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAV 262
HG+H + +G N G P A++ +
Sbjct: 79 DG-------------KTAVDQEHGTHVSGILSG----NAPSETKEPYRLEGAMPEAQLLL 121
Query: 263 YKTCWDSGC--YDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRG 320
+ +G Y + A DAI G ++++S G A D +A S+G
Sbjct: 122 MRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKG 181
Query: 321 ILVVASAGNEGNEGSVT----------------NLAPWMFTIAASSTDRDFTSEIVLGDG 364
+ +V SAGN+ + G T A T+A+ S D+ T + +
Sbjct: 182 VSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTA 241
Query: 365 ANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAES 424
E ++S + Y + + +GK+ + +
Sbjct: 242 DQQDKEMP----------VLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDI 291
Query: 425 STESKLRKSMVVKEAGGVGMILVDEPGKDVAIPF----VIPSAVVGKKTGNKILSYISHT 480
+ K+ K+AG VG+++ D K I +P+A + +K G + T
Sbjct: 292 DFKDKIA---KAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNPQKT 348
Query: 481 SKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKM 540
VL + +++ FSS G +KPD+ APG +I+++ +
Sbjct: 349 ----ITFNATPKVLPTASGTKLSRFSSWGLT--ADGNIKPDIAAPGQDILSSVANN---- 398
Query: 541 QFNILSGTSMACPHVTGIATLIKAVHPSWSPSA--------IKSAIMTTATALDKNHKPI 592
++ LSGTSM+ P V GI L++ + + P K +M++ATAL +
Sbjct: 399 KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKA 458
Query: 593 TVDPKGRRGNAFDYGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGY--DEKSLHLVTRD 650
P G+G ++ +K + + D T + D+ + + +
Sbjct: 459 YFSP-------RQQGAGAVDAKKASAATMYVT--DKDNTSSKVHLNNVSDKFEVTVNVHN 509
Query: 651 NSKCSQKLPAPYDLNYPSITVPNLKGNFSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAP 710
S P +L Y + TV K + V S K + + VTV
Sbjct: 510 KSDK------PQELYYQA-TVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPI 562
Query: 711 ERLIFNSYGQKINFTVHFKLTSPPKGYGFGYLSWKNG 747
+ F+ + G++ +K
Sbjct: 563 DAS---------RFSKDLLAQMKNGYFLEGFVRFKQD 590
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 1e-26
Identities = 84/430 (19%), Positives = 146/430 (33%), Gaps = 72/430 (16%)
Query: 209 DIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPM--ARIAVYKTC 266
+ T ++ P +++ HG+H A T A A N G+ G P A I + K
Sbjct: 49 NNSGTGNWYQPGNNNAHGTHVAGTIA----AIANNEGVV-----GVMPNQNANIHIVKVF 99
Query: 267 WDSGC-YDVDLLAAFDDAIRD-GVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVV 324
++G Y L+AA D + G +++++SLG G + + G+L++
Sbjct: 100 NEAGWGYSSSLVAAIDTCVNSGGANVVTMSLG-----GSGSTTTERNALNTHYNNGVLLI 154
Query: 325 ASAGNEGNEGSVTNLAPWMFTIAASSTDRD--------FTSEI--------VLGDGANFT 368
A+AGN G+ S + A + ++ ++ D + +T ++ +L
Sbjct: 155 AAAGNAGD-SSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGE 213
Query: 369 GESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTES 428
G + S S TP +SY S S +
Sbjct: 214 GRLADITIGGQSY--FSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGN 271
Query: 429 KLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIF 488
K +V+ G G + +V + L
Sbjct: 272 MANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITV 331
Query: 489 PAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGT 548
P + + A +A + G + V+ G + +GT
Sbjct: 332 P---SVSVDRATGLALKAKLGQS--------TTVSNQGNQ------------DYEYYNGT 368
Query: 549 SMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGS 608
SMA PHV+G+ATL+ + HP S S +++A+ TA L G G
Sbjct: 369 SMATPHVSGVATLVWSYHPECSASQVRAALNATADDL------------SVAGRDNQTGY 416
Query: 609 GFLNPRKVLS 618
G +N +
Sbjct: 417 GMINAVAAKA 426
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 495 GSEPAPRVAAFSSKGP----NALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSM 550
RVA +SS+G + +++APG ++ + W +N +SGTSM
Sbjct: 196 QQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNG----GYNTISGTSM 251
Query: 551 ACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGF 610
A PHV+G+A I A +PS S + ++S + A ++D I G+ + G GF
Sbjct: 252 ATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD-----IKGGYGAAIGDDYASGFGF 306
Query: 611 LN 612
Sbjct: 307 AR 308
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 6e-13
Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 19/144 (13%)
Query: 218 SPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDL 276
S D +GHG+H A TA ++ G G AP A + YK DSG Y D+
Sbjct: 64 SCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSDDI 116
Query: 277 LAAFDDAIRDGVH-----ILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEG 331
AA A I+S+SLG + IS +A S+G+L+VA+AGN G
Sbjct: 117 AAAIRHAADQATATGTKTIISMSLG-----SSANNSLISSAVNYAYSKGVLIVAAAGNSG 171
Query: 332 -NEGSVTNLAPWMFTIAASSTDRD 354
++G++ IA ++ +
Sbjct: 172 YSQGTIGYPGALPNAIAVAALENV 195
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-22
Identities = 45/137 (32%), Positives = 59/137 (43%), Gaps = 18/137 (13%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAW-----SPAVGKMQFNILSGTSMACPHV 555
+ FSS+GP A N LKP+V APG IIAA + GT+MA PHV
Sbjct: 308 VITDFSSRGPTADN--RLKPEVVAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHV 365
Query: 556 TGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRK 615
GIA L+ HPSW+P +K+A++ TA + K YG+G +N K
Sbjct: 366 AGIAALLLQAHPSWTPDKVKTALIETADIV-----------KPDEIADIAYGAGRVNAYK 414
Query: 616 VLSPGLIYDAQPIDYTV 632
Y
Sbjct: 415 AAYYDNYAKLTFTGYVS 431
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 5e-16
Identities = 68/311 (21%), Positives = 112/311 (36%), Gaps = 77/311 (24%)
Query: 66 HAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQIA-----------QMPGVVSVFPNMK 114
++ A Y+Y A K+ + IA Q+ GV + +
Sbjct: 51 AVEILDFLGAKIKYNYHI-IPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYV 109
Query: 115 RRLHTTHS---WDFMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPA 171
++ +M + + I +G IDTGI P
Sbjct: 110 VKVAVETEGLDESAAQVMATNMWNLGYDGS----GITIGIIDTGIDASHPDLQG------ 159
Query: 172 PAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTAS 231
KVIG D V + +P D +GHG+H AS
Sbjct: 160 ---------------------KVIG------WV----DFVNGKT--TPYDDNGHGTHVAS 186
Query: 232 TAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLA----AFDDAIRD 286
AAG A+ G +G AP A++ K G D++ A + +
Sbjct: 187 IAAGTGAAS-------NGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKY 239
Query: 287 GVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEG-NEGSVTN--LAPWM 343
G+ +++LSLG + Q +D++S +A G++VV +AGN G N+ +V + A +
Sbjct: 240 GIKVINLSLG--SSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKV 297
Query: 344 FTIAASSTDRD 354
T+ A D+
Sbjct: 298 ITVGA--VDKY 306
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 99 bits (248), Expect = 1e-21
Identities = 45/233 (19%), Positives = 79/233 (33%), Gaps = 25/233 (10%)
Query: 489 PAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGT 548
A+ + + V ++S+ P V APG I + + +++GT
Sbjct: 406 EAEYAMREKLPGNVYTWTSRDPCIDG--GQGVTVCAPGGAIASVP--QFTMSKSQLMNGT 461
Query: 549 SMACPHVTGIATLI----KAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAF 604
SMA PHV G L+ K + +SP +IK AI TAT L + F
Sbjct: 462 SMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLG-------------YVDPF 508
Query: 605 DYGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDNSKCSQKLPAPYDL 664
G G LN K + + F +G + + + + S +
Sbjct: 509 AQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIHLRQGVQRNSIDYNVYIEP 568
Query: 665 NYPSITVPNLKGNFSVTRSVTNVGKPRSI----YKAVVSSPVGVTVTVAPERL 713
+ + + K F+ + + + + + + V V P L
Sbjct: 569 IFYNDKEADPKDKFNFNVRLNLIASQPWVQCGAFLDLSYGTRSIAVRVDPTGL 621
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 80.3 bits (197), Expect = 2e-15
Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 25/165 (15%)
Query: 219 PRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGC---YDVD 275
SS HG+H +S A+G + ++ G AP A+I
Sbjct: 266 VGMSSPHGTHVSSIASGNH---------SSRDVDGVAPNAKIVSMTIGDGRLGSMETGTA 316
Query: 276 LLAAFDDAI-----RDGVHILSLSLG--PEAPQGDYFSDAISIGSFHATSRGILVVASAG 328
L+ A + + ++++S G + + + G++ VASAG
Sbjct: 317 LVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELM---NEVVNKYGVVWVASAG 373
Query: 329 NEG-NEGSVTNLAPW--MFTIAASSTDRDFTSEIVLGDGANFTGE 370
N G +V I + E G
Sbjct: 374 NHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAMREKLPGN 418
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 1e-21
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 27/117 (23%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
+ A+FSS GP + DV APG++I + ++ +GTSMA PHV G A
Sbjct: 185 QRASFSSVGP--------ELDVMAPGVSIQSTLPGN----KYGAYNGTSMASPHVAGAAA 232
Query: 561 LIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVL 617
LI + HP+W+ + ++S++ T T L G++F YG G +N +
Sbjct: 233 LILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYYGKGLINVQAAA 274
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 3e-15
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 22/143 (15%)
Query: 218 SPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGC-YDVDL 276
+D++ HG+H A T A + G G AP A + K G +
Sbjct: 57 PFQDNNSHGTHVAGTVAAL---------NNSIGVLGVAPSASLYAVKVLGADGSGQYSWI 107
Query: 277 LAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSV 336
+ + AI + + ++++SLG G S A+ A + G++VVA+AGNEG GS
Sbjct: 108 INGIEWAIANNMDVINMSLG-----GPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGSS 162
Query: 337 TNL-----APWMFTIAASSTDRD 354
+ + P + + A D
Sbjct: 163 STVGYPGKYPSVIAVGA--VDSS 183
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 1e-21
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 27/117 (23%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
A+FSS G + +V APG + + + + L+GTSMA PHV G A
Sbjct: 184 NRASFSSVGA--------ELEVMAPGAGVYSTYPTN----TYATLNGTSMASPHVAGAAA 231
Query: 561 LIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVL 617
LI + HP+ S S +++ + +TAT L G++F YG G +N
Sbjct: 232 LILSKHPNLSASQVRNRLSSTATYL---------------GSSFYYGKGLINVEAAA 273
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 4e-16
Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 26/156 (16%)
Query: 209 DIVETVSF----RSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYK 264
++V SF D +GHG+H A T A G G AP + K
Sbjct: 43 NVVGGASFVAGEAYNTDGNGHGTHVAGTVAALD---------NTTGVLGVAPSVSLYAVK 93
Query: 265 TCWDSGC-YDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILV 323
SG +++ + A +G+ ++++SLG G S A+ +A +RG++V
Sbjct: 94 VLNSSGSGSYSGIVSGIEWATTNGMDVINMSLG-----GASGSTAMKQAVDNAYARGVVV 148
Query: 324 VASAGNEGNEGSVTNL-----APWMFTIAASSTDRD 354
VA+AGN GN GS + + + A D +
Sbjct: 149 VAAAGNSGNSGSTNTIGYPAKYDSVIAVGA--VDSN 182
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 6e-21
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 27/117 (23%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
A+FS G D+ APG+N+ + + + + L+GTSMA PHV G A
Sbjct: 179 NRASFSQYGA--------GLDIVAPGVNVQSTYPGS----TYASLNGTSMATPHVAGAAA 226
Query: 561 LIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVL 617
L+K +PSWS I++ + TAT+L G+ YGSG +N
Sbjct: 227 LVKQKNPSWSNVQIRNHLKNTATSL---------------GSTNLYGSGLVNAEAAT 268
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 7e-14
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 218 SPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDL 276
S +D +GHG+H A T A + G G AP A + K SG +
Sbjct: 55 STQDGNGHGTHVAGTIAALN---------NSIGVLGVAPSAELYAVKVLGASGSGSVSSI 105
Query: 277 LAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSV 336
+ A +G+H+ +LSLG S + ATSRG+LVVA++GN G GS+
Sbjct: 106 AQGLEWAGNNGMHVANLSLG-----SPSPSATLEQAVNSATSRGVLVVAASGNSGA-GSI 159
Query: 337 TNLAPWMFTIAASSTDRD 354
+ A + +A +TD++
Sbjct: 160 SYPARYANAMAVGATDQN 177
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 5e-18
Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 22/122 (18%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
FS+ G N K + APG I+ A + L+GTSMA P +TGI+
Sbjct: 252 TPCHFSNWGGNNT-----KEGILAPGEEILGAQP---CTEEPVRLTGTSMAAPVMTGISA 303
Query: 561 LIKAVH----PSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKV 616
L+ ++ A+++A++ TA D GF+N
Sbjct: 304 LLMSLQVQQGKPVDAEAVRTALLKTAIPCDPE----------VVEEPERCLRGFVNIPGA 353
Query: 617 LS 618
+
Sbjct: 354 MK 355
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 1e-15
Identities = 32/206 (15%), Positives = 55/206 (26%), Gaps = 33/206 (16%)
Query: 141 TKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYY 200
T I + ID F + W E + + +
Sbjct: 45 TLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAE-PITPEDYAAFQSIRD---- 99
Query: 201 MSGYEAEEDIVETVSF----RSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAP 256
G + +E + + + H H ST G+ G AP
Sbjct: 100 -QGLKGKEKEEALEAVIPDTKDRIVLNDHACHVTSTIVGQ----------EHSPVFGIAP 148
Query: 257 MARIAVYKTCWDSG------CYDVDLLAAFDDAIRDGVHILSLSLG---PEAPQGDYFSD 307
R+ ++L A D A+ G +I+ + + +
Sbjct: 149 NCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQ 208
Query: 308 AISIGSFHATSRGILVVASAGNEGNE 333
AI +L+V+ GN NE
Sbjct: 209 AIK----KCQDNNVLIVSPTGNNSNE 230
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 86.7 bits (214), Expect = 9e-18
Identities = 40/224 (17%), Positives = 65/224 (29%), Gaps = 34/224 (15%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAW--------------SPAVGKMQFNILS 546
RVA FSS+ V APG+ I++ PA ++
Sbjct: 327 RVAGFSSRSD--------GVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQ 378
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GTSMA PHVTG+ ++ P+ P I+ + TA G D
Sbjct: 379 GTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTA------------FDFNGNGWDHDT 426
Query: 607 GSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDNSKCSQKLPAPYDLNY 666
G G + L L ++ V + + + A +
Sbjct: 427 GYGLVKLDAALQGPLPTQGGVEEFQVVVTDAKGNFGVPTVFVSMMRDNGSCYYAKTGPDG 486
Query: 667 PSITVPNLKGNFSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAP 710
+ G + + + S P G + +
Sbjct: 487 IARFPHIDSGTYDIFVGGPDHWDRALAPYDGESIPGGYAIALRM 530
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 1e-13
Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 29/150 (19%)
Query: 216 FRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGC---- 271
G+H A T A + + G G AP A+I D
Sbjct: 191 GTDSSYGGSAGTHVAGTIAAK--KD-------GKGIVGVAPGAKIMPIVIFDDPALVGGN 241
Query: 272 ---YDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFS----DAISIGSFHATSRGILVV 324
D + A A G +++ S G G +S +A +A G+++V
Sbjct: 242 GYVGDDYVAAGIIWATDHGAKVMNHSWG-----GWGYSYTMKEAFD----YAMEHGVVMV 292
Query: 325 ASAGNEGNEGSVTNLAPWMFTIAASSTDRD 354
SAGN ++ A + I ++ D
Sbjct: 293 VSAGNNTSDSHHQYPAGYPGVIQVAALDYY 322
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 29/123 (23%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
R++ F++ + D+ APG+ I + + + + LSGT+MA PHV G
Sbjct: 214 RLSDFTNTNE--------EIDIVAPGVGIKSTYLDS----GYAELSGTAMAAPHVAGALA 261
Query: 561 LIKAVHP-----SWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRK 615
LI + S S + I + ++ AT P G A G L+ +
Sbjct: 262 LIINLAEDAFKRSLSETEIYAQLVRRAT------------PIGFTAQAEGNGFLTLDLVE 309
Query: 616 VLS 618
++
Sbjct: 310 RIT 312
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 6e-12
Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 27/153 (17%)
Query: 218 SPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGC-YDVDL 276
+ D++GHG+H A T A G G AP A + + K G +
Sbjct: 79 NFSDNNGHGTHVAGTVAA---------AETGSGVVGVAPKADLFIIKALSGDGSGEMGWI 129
Query: 277 LAAFDDAI------RDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNE 330
A A+ + + I+++SLG G S+ + +A S + VV +AGNE
Sbjct: 130 AKAIRYAVDWRGPKGEQMRIITMSLG-----GPTDSEELHDAVKYAVSNNVSVVCAAGNE 184
Query: 331 GNEGSVTNL------APWMFTIAASSTDRDFTS 357
G+ TN + + A D +
Sbjct: 185 GDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSD 217
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 83.4 bits (206), Expect = 6e-17
Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 23/150 (15%)
Query: 217 RSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDL 276
D GHG+ + + A G G AP + +Y+ + +
Sbjct: 193 HDVNDRKGHGTMVSGQTS------------ANGKLIGVAPNNKFTMYRVFGSKKTELLWV 240
Query: 277 LAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSF-----------HATSRGILVVA 325
A A DG ++++S+G +A + +VVA
Sbjct: 241 SKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVA 300
Query: 326 SAGNEGNEGSVTNLAPWMFTIAASSTDRDF 355
+AGN+G + + + +D
Sbjct: 301 AAGNDGIDVNDKQKLKLQREYQGNGEVKDV 330
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 1e-14
Identities = 29/137 (21%), Positives = 44/137 (32%), Gaps = 39/137 (28%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAA-------WSPAVGKMQFNILS------- 546
++ FS+ G N D+ APG + W + NIL+
Sbjct: 348 NLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRY 400
Query: 547 ----GTSMACPHVTGIATLIKA-VHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRG 601
GT++A P V+G LI H P + T+ +
Sbjct: 401 IYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN-------------K 447
Query: 602 NAFDYGSGFLNPRKVLS 618
YG G L+ K L+
Sbjct: 448 PFSRYGHGELDVYKALN 464
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 1e-16
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 28/118 (23%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
R+A+FS+ G DV APG++I++ + ++ +SGTSMA PHV G+A
Sbjct: 190 RLASFSNYGT--------WVDVVAPGVDIVSTITGN----RYAYMSGTSMASPHVAGLAA 237
Query: 561 LIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLS 618
L+ + + I+ AI TA + G + G +N ++
Sbjct: 238 LLASQGR--NNIEIRQAIEQTADKIS--------------GTGTYFKYGRINSYNAVT 279
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 3e-14
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 218 SPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDL 276
P D + HG+H A AA N N G+A G AP RI + +G D+
Sbjct: 65 DPMDLNNHGTHVAGIAAA--ETN-NATGIA-----GMAPNTRILAVRALDRNGSGTLSDI 116
Query: 277 LAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSV 336
A A G +++LSLG + +A++ +A ++G +VVA+AGN G+ +
Sbjct: 117 ADAIIYAADSGAEVINLSLGCDCH-TTTLENAVN----YAWNKGSVVVAAAGNNGS-STT 170
Query: 337 TNLAPWMFTIAASSTDRD 354
A + IA + D+
Sbjct: 171 FEPASYENVIAVGAVDQY 188
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 82.3 bits (203), Expect = 1e-16
Identities = 33/139 (23%), Positives = 51/139 (36%), Gaps = 17/139 (12%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNI--------LSGTSMAC 552
VA FSS+GP +KPDV APG I++A S F + GTSMA
Sbjct: 201 HVAQFSSRGPT--KDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMAT 258
Query: 553 PHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
P V G ++ K +++ A G + G G +
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIA-------GAADIGLGYPNGNQGWGRVT 311
Query: 613 PRKVLSPGLIYDAQPIDYT 631
K L+ + ++ + +
Sbjct: 312 LDKSLNVAYVNESSSLSTS 330
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 9e-16
Identities = 46/255 (18%), Positives = 74/255 (29%), Gaps = 67/255 (26%)
Query: 117 LHTTHSWDFMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWK 176
+ + GL G+ IV DTG+ D M A ++
Sbjct: 8 VKADVAQSSYGLYGQ--------------GQIVAVADTGLDTGRN---DSSMHEA---FR 47
Query: 177 GQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGR 236
G K+ + D++GHG+H A + G
Sbjct: 48 G---------------KITALYAL-------------GRTNNANDTNGHGTHVAGSVLG- 78
Query: 237 YVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGC---YDVDLLAAFDDAIRDGVHILSL 293
+G AP A + G +L F A G I +
Sbjct: 79 ----------NGSTNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTN 128
Query: 294 SLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSVTN---LAPWMFTIAASS 350
S G A G Y +D+ ++ + + ++ +AGNEG G + A T+ A+
Sbjct: 129 SWG-AAVNGAYTTDSRNVDDY-VRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATE 186
Query: 351 TDRDFTSEIVLGDGA 365
R
Sbjct: 187 NLRPSFGSYADNINH 201
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 1e-16
Identities = 48/221 (21%), Positives = 74/221 (33%), Gaps = 30/221 (13%)
Query: 146 NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYE 205
N++V +DTGI + G + + + + ++
Sbjct: 33 NVVVAVVDTGILH-HRDLNA-------NVLPGYDFISNSQISLDGDGRDADPFDEGDWFD 84
Query: 206 AEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKT 265
+ DSS HGSH A T A V N N G+A G A A++ +
Sbjct: 85 NWACGGRPDPRKERSDSSWHGSHVAGTIAA--VTN-NRIGVA-----GVAYGAKVVPVRA 136
Query: 266 CWDSGCYDVDLLAAFDDAI----------RDGVHILSLSLGPEAPQGDYFSDAISIGSFH 315
G YD D+ A R+ ++++SLG + I
Sbjct: 137 LGRCGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQTMID----R 192
Query: 316 ATSRGILVVASAGNEGNEGSVTNLAPWMFTIAASSTDRDFT 356
AT G LVV +AGNE S T ++ +T
Sbjct: 193 ATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSRGI 233
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 28/125 (22%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAW---SPAVGKMQFNILSGTSMACPHVTG 557
A+FS+ G + D+ APG +I++ + ++ ++GTSMA PHV+G
Sbjct: 233 IRASFSNYGVD--------VDLAAPGQDILSTVDSGTRRPVSDAYSFMAGTSMATPHVSG 284
Query: 558 IATLIKA----VHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNP 613
+A L+ + V+ + +P+ +K +++T + + GR A GSG ++
Sbjct: 285 VAALVISAANSVNKNLTPAELKDVLVSTTSPFN-----------GRLDRA--LGSGIVDA 331
Query: 614 RKVLS 618
++
Sbjct: 332 EAAVN 336
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 1e-16
Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 24/117 (20%)
Query: 502 VAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATL 561
S G N D+ APG NI A + SGTS A V+G+
Sbjct: 236 GITGSRFGNN-------WVDIAAPGQNITFLRPDA----KTGTGSGTSEATAIVSGVLAA 284
Query: 562 IKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLS 618
+ + +P + + +K ++ +A LN K +S
Sbjct: 285 MTSCNPRATATELKRTLLESADKYPS-------------LVDKVTEGRVLNAEKAIS 328
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 8e-14
Identities = 27/175 (15%), Positives = 51/175 (29%), Gaps = 40/175 (22%)
Query: 217 RSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG----CY 272
+ HG+ AS A + G G P A I+ + D
Sbjct: 81 KKSEALYIHGTAMASLIA------------SRYGIYGVYPHALISSRRVIPDGVQDSWIR 128
Query: 273 DVDLLAAFDDAIRDGVHILSLSLGPEA--PQGDYFSDAISIGSFHATSRGILVVASAGNE 330
++ + + I+++S G + + + L+VA+ GN+
Sbjct: 129 AIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSR----MGRNNDRLIVAAVGND 184
Query: 331 G------------------NEGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANF 367
G SV + +AA + R + ++ G G
Sbjct: 185 GADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGETPVLHGGGITG 239
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 3e-16
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 492 TVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMA 551
TV + ++FS+ G D+ APG +I ++W N +SGTSMA
Sbjct: 177 TVGSTTSNDSRSSFSNYGTCL--------DIYAPGSSITSSW--YTSNSATNTISGTSMA 226
Query: 552 CPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583
PHV G+A L +P+ SP+ + + + T AT
Sbjct: 227 SPHVAGVAALYLDENPNLSPAQVTNLLKTRAT 258
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 4e-06
Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 25/119 (21%)
Query: 217 RSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYK--TCWDSGCYDV 274
D +GHG+H A T G G A + + C SG
Sbjct: 64 YDATDCNGHGTHVAGTIGGSTY--------------GVAKNVNVVGVRVLNCSGSGSNS- 108
Query: 275 DLLAAFDDAIRDGV--HILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEG 331
++A + + + ++SLG DA++ A + GI V +AGN+
Sbjct: 109 GVIAGINWVKNNASGPAVANMSLG--GGASQATDDAVN----AAVAAGITFVVAAGNDN 161
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 3e-16
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 33/135 (24%)
Query: 488 FPAK-----TVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQF 542
+PA V ++ ++FS+ G DV APG +I + + + +
Sbjct: 171 YPAYYSNAIAVASTDQNDNKSSFSTYGSWV--------DVAAPGSSIYSTYPTS----TY 218
Query: 543 NILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGN 602
LSGTSMA PHV G+A L+ + S S I++AI TA + G
Sbjct: 219 ASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKIS--------------GT 262
Query: 603 AFDYGSGFLNPRKVL 617
+ G +N K +
Sbjct: 263 GTYWAKGRVNAYKAV 277
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 5e-14
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 218 SPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDL 276
+P++ +GHG+H A AA + G G AP A I + +SG +
Sbjct: 64 TPQNGNGHGTHCAGIAAAV--------TNNSTGIAGTAPKASILAVRVLDNSGSGTWTAV 115
Query: 277 LAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSV 336
A G ++SLSLG A++ +A ++G +VVA+AGN GN +
Sbjct: 116 ANGITYAADQGAKVISLSLGGTVG-NSGLQQAVN----YAWNKGSVVVAAAGNAGN-TAP 169
Query: 337 TNLAPWMFTIAASSTDRD 354
A + IA +STD++
Sbjct: 170 NYPAYYSNAIAVASTDQN 187
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 6e-16
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 492 TVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMA 551
TV + + A+FS+ G D+ APG +I +AW L+GTSMA
Sbjct: 175 TVGATTSSDARASFSNYGSCV--------DLFAPGASIPSAWY--TSDTATQTLNGTSMA 224
Query: 552 CPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583
PHV G+A L +PS +P+++ SAI+ AT
Sbjct: 225 TPHVAGVAALYLEQNPSATPASVASAILNGAT 256
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 8e-06
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 25/118 (21%)
Query: 218 SPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYK--TCWDSGCYDVD 275
+ +D +GHG+H A T G Y G A + + C SG
Sbjct: 63 NGQDCNGHGTHVAGTIGGV-----TY---------GVAKAVNLYAVRVLDCNGSGSTS-G 107
Query: 276 LLAAFDDAIRDGVH--ILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEG 331
++A D R+ + ++SLG G S A+ ++ + G++ +AGN+
Sbjct: 108 VIAGVDWVTRNHRRPAVANMSLG-----GGV-STALDNAVKNSIAAGVVYAVAAGNDN 159
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 6e-16
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
+A+FS++ P +V+APG++I++ + + L GT+MA PHV+G+
Sbjct: 212 NIASFSNRQP----------EVSAPGVDILSTYPDD----SYETLMGTAMATPHVSGVVA 257
Query: 561 LIKAVHPSWSPSAIKSAIMTTATALD-KNHKPITVDPKGRRGNAFDYGSGFLNPRKVLS 618
LI+A + + + + IT D G G DYG G + +
Sbjct: 258 LIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDADYGYGVVRAALAVQ 316
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 40/159 (25%), Positives = 59/159 (37%), Gaps = 36/159 (22%)
Query: 217 RSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGC-YDVD 275
R D +GHG+H T A + N G G AP +I + G D
Sbjct: 67 RDCADQNGHGTHVIGTIAA--LNN-------DIGVVGVAPGVQIYSVRVLDARGSGSYSD 117
Query: 276 LLAAFDDAIRD--------------------GVHILSLSLGPEAPQGDYFSDAISIGSFH 315
+ + AI ++S+SLG A Y D I
Sbjct: 118 IAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD-DSYLYDMII----Q 172
Query: 316 ATSRGILVVASAGNEGNEGSVTNLAPWMFTIAASSTDRD 354
A + GI++VA++GNEG S + A + IA + D +
Sbjct: 173 AYNAGIVIVAASGNEGA-PSPSYPAAYPEVIAVGAIDSN 210
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 1e-15
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580
D+ APG +II A S F SGTS A HV GIA ++ + P + + ++ ++
Sbjct: 208 DLFAPGEDIIGASSD--CSTCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIH 265
Query: 581 TAT 583
+
Sbjct: 266 FSA 268
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 29/144 (20%)
Query: 196 GARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGA 255
R ++ +E + T R HG+H A +GR G A
Sbjct: 45 EGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRDA--------------GVA 90
Query: 256 PMARIAVYK--TCWDSGCYDVDLLAAFDDAIRDGVH------ILSLSLGPEAPQGDYFSD 307
A + + C G L + + + ++ L L G Y S
Sbjct: 91 KGASMRSLRVLNCQGKGTVS-GTLIGLEFIRKSQLVQPVGPLVVLLPLA-----GGY-SR 143
Query: 308 AISIGSFHATSRGILVVASAGNEG 331
++ G+++V +AGN
Sbjct: 144 VLNAACQRLARAGVVLVTAAGNFR 167
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 1e-15
Identities = 59/321 (18%), Positives = 100/321 (31%), Gaps = 84/321 (26%)
Query: 71 EQAQASHVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKRRLHTTHSWDFMGLM- 129
VY +K + ++ +MPGV V + + L SW G
Sbjct: 20 LGIGGHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQ 78
Query: 130 -------GEESMEIPG---FSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQC 179
G E ++ P + + I V +DTG+ + P +
Sbjct: 79 PAQTIPWGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAA-------------- 124
Query: 180 ESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVA 239
+ + G + + R D +GHG+H T A
Sbjct: 125 -------------NIAWCVSTLRGKVSTKL-------RDCADQNGHGTHVIGTIAALN-- 162
Query: 240 NMNYRGLAAGGARGGAPMARIAVYKTCWDSGC-YDVDLLAAFDDAIRD------------ 286
N G+ G AP +I + G D+ + AI
Sbjct: 163 --NDIGVV-----GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGI 215
Query: 287 --------GVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSVTN 338
++S+SLG G + A + GI++VA++GNEG S +
Sbjct: 216 IAGDPDDDAAEVISMSLG-----GPADDSYLYDMIIQAYNAGIVIVAASGNEGA-PSPSY 269
Query: 339 LA--PWMFTIAASSTDRDFTS 357
A P + + A ++ + S
Sbjct: 270 PAAYPEVIAVGAIDSNDNIAS 290
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 2e-15
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
+A+FS++ P +V+APG++I++ + + L GT+MA PHV+G+
Sbjct: 287 NIASFSNRQP----------EVSAPGVDILSTYPDD----SYETLMGTAMATPHVSGVVA 332
Query: 561 LIKAVHPSWSPSAIKSAIMTTATALD-KNHKPITVDPKGRRGNAFDYGSGFLNPRKVLS 618
LI+A + + + + IT D G G DYG G + +
Sbjct: 333 LIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDADYGYGVVRAALAVQ 391
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 492 TVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMA 551
TV + + ++FS+ G D+ APG I +AW + +SGTSMA
Sbjct: 175 TVGSTTSSDSRSSFSNWGSCV--------DLFAPGSQIKSAWYDG----GYKTISGTSMA 222
Query: 552 CPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583
PHV G+A L + +P + + + A+
Sbjct: 223 TPHVAGVAALYLQENNGLTPLQLTGLLNSRAS 254
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 4e-06
Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 25/119 (21%)
Query: 217 RSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYK--TCWDSGCYDV 274
D +GHG+H A T G G A I + +C SG
Sbjct: 62 ADSSDCNGHGTHVAGTIGGSQY--------------GVAKNVNIVGVRVLSCSGSGTTS- 106
Query: 275 DLLAAFDDAIRDGV--HILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEG 331
+++ D ++ + ++SLG Q A+ A G+ + +AGN
Sbjct: 107 GVISGVDWVAQNASGPSVANMSLG--GGQSTALDSAVQ----GAIQSGVSFMLAAGNSN 159
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 5e-15
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580
D+ APG +II A S F SGTS A HV GIA ++ + P + + ++ ++
Sbjct: 360 DLFAPGEDIIGASSD--CSTCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIH 417
Query: 581 TAT 583
+
Sbjct: 418 FSA 420
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 4e-12
Identities = 50/328 (15%), Positives = 99/328 (30%), Gaps = 74/328 (22%)
Query: 39 YVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQAS 98
YVV + T + + + L A + HV+ GF K++
Sbjct: 78 YVVVLKEETHLSQSE---RTARRLQAQAARRGYLTKILHVFH--GLLPGFLVKMSGDLLE 132
Query: 99 QIAQMPGVVSVFPNMKRRLHTTHSW--DFMGLMGEESMEIPGFSTKNQVNIIVGFIDTGI 156
++P V + + + W + + + E + V + + +DT I
Sbjct: 133 LALKLPHVDYIEEDSSVFAQSI-PWNLERITPPRYRADEYQPPDGGSLVEVYL--LDTSI 189
Query: 157 WPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSF 216
+ R ++ +E + T
Sbjct: 190 QSDHREI--------------------------------EGRVMVTDFENVPEEDGTRFH 217
Query: 217 RSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYK--TCWDSGCYDV 274
R HG+H A +GR G A A + + C G
Sbjct: 218 RQASKCDSHGTHLAGVVSGRDA--------------GVAKGASMRSLRVLNCQGKGTVS- 262
Query: 275 DLLAAFDDAIRDGVH------ILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAG 328
L + + + ++ L L G Y S ++ G+++V +AG
Sbjct: 263 GTLIGLEFIRKSQLVQPVGPLVVLLPLA-----GGY-SRVLNAACQRLARAGVVLVTAAG 316
Query: 329 NEGNEGSVTNLA--PWMFTIAAS-STDR 353
N ++ + + A P + T+ A+ + D+
Sbjct: 317 NFRDDACLYSPASAPEVITVGATNAQDQ 344
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
+ FS+ G D+ APG +I + W + N +SGTSMA PH+ G+A
Sbjct: 189 VRSTFSNYGRVV--------DIFAPGTSITSTWIGG----RTNTISGTSMATPHIAGLAA 236
Query: 561 LIKAVHPSWSPSAIKSAIMTTAT 583
+ + S A+ I T +T
Sbjct: 237 YLFGLEGG-SAGAMCGRIQTLST 258
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 7e-05
Identities = 28/123 (22%), Positives = 41/123 (33%), Gaps = 30/123 (24%)
Query: 218 SPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKT--CWDSGCYDVD 275
+ RD GHG+H A T + G A I K SG +
Sbjct: 63 TARDGHGHGTHCAGTIGSKTW--------------GVAKKVSIFGVKVLDDSGSGSLS-N 107
Query: 276 LLAAFDDAIRDGVH-------ILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAG 328
++A D D + S+SLG + A + S G+ V +AG
Sbjct: 108 IIAGMDFVASDRQSRNCPRRTVASMSLG--GGYSAALNQAAA----RLQSSGVFVAVAAG 161
Query: 329 NEG 331
N+
Sbjct: 162 NDN 164
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 4e-12
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 492 TVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMA 551
TV S+ R ++FS+ G D+ PG +I++ W +SGTSMA
Sbjct: 179 TVGASDRYDRRSSFSNYGSVL--------DIFGPGTDILSTWIGG----STRSISGTSMA 226
Query: 552 CPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583
PHV G+A + + + + ++ I TA
Sbjct: 227 TPHVAGLAAYLMTLGKT-TAASACRYIADTAN 257
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 5e-05
Identities = 31/123 (25%), Positives = 44/123 (35%), Gaps = 30/123 (24%)
Query: 218 SPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKT--CWDSGCYDVD 275
S RD +GHG+H A T R G A ++ K SG Y
Sbjct: 62 SSRDGNGHGTHCAGTVGSRTY--------------GVAKKTQLFGVKVLDDNGSGQYS-T 106
Query: 276 LLAAFDDAIRDGVH-------ILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAG 328
++A D D + + SLSLG + A + S G++V +AG
Sbjct: 107 IIAGMDFVASDKNNRNCPKGVVASLSLG--GGYSSSVNSAAA----RLQSSGVMVAVAAG 160
Query: 329 NEG 331
N
Sbjct: 161 NNN 163
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 66.7 bits (162), Expect = 1e-11
Identities = 39/231 (16%), Positives = 80/231 (34%), Gaps = 18/231 (7%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
+S + + G I S + N GTS A P G+ T
Sbjct: 231 LHPPYSEGCSAVM----AVTYSSGSGEYI---HSSDINGRCSNSHGGTSAAAPLAAGVYT 283
Query: 561 LIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLSPG 620
L+ +P+ + ++ + +A L+KN D + + YG G ++ K++
Sbjct: 284 LLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMS 343
Query: 621 LIYDAQPIDYTVFLCSIGYDEKSLHLVTRDNSKCSQKLPAPYDLNYPSITVPNLKGNFSV 680
++ +L ++ V++ + + L + ++ S+ N K V
Sbjct: 344 KTWENVNAQTWFYLPTLY--------VSQSTNSTEETLESVITISEKSLQDANFKRIEHV 395
Query: 681 TRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINF---TVHF 728
T +V + R + SP G+ + R S ++ +V
Sbjct: 396 TVTVDIDTEIRGTTTVDLISPAGIISNLGVVRPRDVSSEGFKDWTFMSVAH 446
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 1e-06
Identities = 32/157 (20%), Positives = 51/157 (32%), Gaps = 21/157 (13%)
Query: 209 DIVETVSFRSPR-DSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCW 267
D + + PR HG+ A A N+ G A+I+ +
Sbjct: 83 DFNDNTNLPKPRLSDDYHGTRCAGEIAA--KKGNNF------CGVGVGYNAKISGIRIL- 133
Query: 268 DSGCYDVDLLAAFDDAIRDGVHILSLSLGPEA------PQGDYFSDAISIGSFHAT-SRG 320
D A+ + D I S S GP D A+ G S+G
Sbjct: 134 SGDITTEDEAASLIYGL-DVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKG 192
Query: 321 ILVVASAGNEGNEGSVTNLAPW---MFTIAASSTDRD 354
+ V ++GN G G N + +++I + D
Sbjct: 193 AIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK 229
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 1e-08
Identities = 28/186 (15%), Positives = 59/186 (31%), Gaps = 15/186 (8%)
Query: 546 SGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFD 605
+GTS + P GI L + + + ++ ++ T+ N + GR+ +
Sbjct: 258 TGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSH-S 316
Query: 606 YGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDNSKCSQKLPAPYDLN 665
YG G L+ +++ + C + + ++L +
Sbjct: 317 YGYGLLDAGAMVALAQNWTTVA---PQRKCIVEI--------LVEPKDIGKRLEVRKAVT 365
Query: 666 YPSITVPNLKGNFSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINF- 724
++ V +T R + SP+G T+ R S ++
Sbjct: 366 ACLGEPNHITRLEHVQARLTLSYNRRGDLAIHLISPMGTRSTLLAARPHDYSADGFNDWA 425
Query: 725 --TVHF 728
T H
Sbjct: 426 FMTTHS 431
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 20/146 (13%)
Query: 218 SPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLL 277
+ + + HG+ A A VAN G A ARI + V+
Sbjct: 80 TQMNDNRHGTRCAGEVAA--VANNGV------CGVGVAYNARIGGVRMLDGEVTDAVE-- 129
Query: 278 AAFDDAIRDGVHILSLSLGP-------EAPQGDYFSDAISIGSFHATSRGILVVASAGNE 330
A + +HI S S GP + P S G + V ++GN
Sbjct: 130 ARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNG 189
Query: 331 GNEGSVTNLAPW---MFTIAASSTDR 353
G E N + ++T++ SS +
Sbjct: 190 GREHDSCNCDGYTNSIYTLSISSATQ 215
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P Length = 114 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 4e-05
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 39 YVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQAS 98
YVV + T + + + L A + HV+ GF K++
Sbjct: 40 YVVVLKEETHLSQSE---RTARRLQAQAARRGYLTKILHVFH--GLLPGFLVKMSGDLLE 94
Query: 99 QIAQMPGVVSV 109
++P V +
Sbjct: 95 LALKLPHVDYI 105
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P Length = 124 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 9e-05
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 39 YVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQAS 98
YVV + T + + + L A + HV+ GF K++
Sbjct: 50 YVVVLKEETHLSQSE---RTARRLQAQAARRGYLTKILHVFH--GLLPGFLVKMSGDLLE 104
Query: 99 QIAQMPGVVSV 109
++P V +
Sbjct: 105 LALKLPHVDYI 115
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 768 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.9 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.86 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 99.02 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 99.0 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.92 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.78 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.73 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.55 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.38 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 96.44 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 95.43 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 94.94 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 94.59 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 94.52 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 93.89 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 90.65 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 87.4 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 85.02 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 84.89 | |
| 3qis_A | 366 | Inositol polyphosphate 5-phosphatase OCRL-1; DENT | 84.85 | |
| 2qsv_A | 220 | Uncharacterized protein; MCSG, structural genomics | 82.77 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-118 Score=1039.58 Aligned_cols=614 Identities=39% Similarity=0.682 Sum_probs=555.9
Q ss_pred CCCCcccccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEE
Q 004205 119 TTHSWDFMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGAR 198 (768)
Q Consensus 119 ~~~s~~~~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~ 198 (768)
++++|+|+|++ +...+|..+.+| +||+|||||||||++||+|.+.+++++|.+|+|.|+.+.+|+...||+|+++++
T Consensus 1 Tt~s~~flgl~--~~~~~w~~~~~G-~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig~~ 77 (649)
T 3i6s_A 1 TTHTSDFLKLN--PSSGLWPASGLG-QDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGAN 77 (649)
T ss_dssp CCSHHHHTTCC--SSSSHHHHHGGG-TTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEEEE
T ss_pred CCCChHHcCCC--CchhhHhccCCC-CCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceeeeE
Confidence 57899999997 356799999999 999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCccccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHH
Q 004205 199 YYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLA 278 (768)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ 278 (768)
+|.+++.... .....+..+++|.+||||||||||||+.+++.+++|++.+.+.||||+|+|++||+++..++..+++++
T Consensus 78 ~f~~~~~~~~-~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ 156 (649)
T 3i6s_A 78 YFNKGILAND-PTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIA 156 (649)
T ss_dssp ECCHHHHHHC-TTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTEECHHHHHH
T ss_pred eccCcccccc-cccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCCCCHHHHHH
Confidence 9987654322 122334467889999999999999999998888899888999999999999999999988899999999
Q ss_pred HHHHHHHcCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCcccee
Q 004205 279 AFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTS 357 (768)
Q Consensus 279 ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~ 357 (768)
||+||+++|+||||||||... ..+..+++++++++|.++||+||+||||+|+ ..+.++.+||+|+|||++.||.|..
T Consensus 157 Ai~~A~~~gvdVIn~SlG~~~--~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~ 234 (649)
T 3i6s_A 157 AMDQAVADGVDMISISYGYRF--IPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAG 234 (649)
T ss_dssp HHHHHHHTTCSEEEECCCCCS--CCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEE
T ss_pred HHHHHHHcCCCEEEeCCccCC--cccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceee
Confidence 999999999999999999873 4477899999999999999999999999999 8888999999999999999999999
Q ss_pred eEEeCCCceEecccc-------cccccccchhccccccccccccCcccCCccCcCCCCCCCC--CCeEEEEeecCCCchh
Q 004205 358 EIVLGDGANFTGESL-------SLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKA--RGKVLVCRHAESSTES 428 (768)
Q Consensus 358 ~~~~~~~~~~~g~~~-------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~gkivl~~~~~~g~~~ 428 (768)
.+.+++++.+.|+++ ..+|+++.. ....|.+..++..++ +|||++|. +|.+.
T Consensus 235 ~~~lgng~~~~g~sl~~~~~~~~~~plv~~~----------------~~~~C~~~~l~~~~vdl~GkIvlc~---~g~~~ 295 (649)
T 3i6s_A 235 TLTLGNGLKIRGWSLFPARAFVRDSPVIYNK----------------TLSDCSSEELLSQVENPENTIVICD---DNGDF 295 (649)
T ss_dssp EEEETTSCEEEEECCCSSCBCEEEEEEECCT----------------TTTTCCCHHHHTTSSSGGGCEEEEC---CCSCH
T ss_pred EEEeCCCcEEeeeecccCcccCcceeeEecc----------------cccccccccccccccccCCcEEEEe---CCCcc
Confidence 999999999999887 235555542 356799888888877 99999999 57899
Q ss_pred HHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCC
Q 004205 429 KLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSK 508 (768)
Q Consensus 429 ~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~ 508 (768)
+.+|..+++++|+.|+|++|+........+.+|+..++..+++.|++|++++.+++++|.+..+..+....+.++.||||
T Consensus 296 ~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSr 375 (649)
T 3i6s_A 296 SDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSAR 375 (649)
T ss_dssp HHHHHHHHHHTCSEEEEECCCGGGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCC
T ss_pred HHHHHHHHHhcCceEEEEecCccccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCC
Confidence 99999999999999999999885446677899999999999999999999999999999999999888889999999999
Q ss_pred CCCCCCCCcccCceeeCCceEEEEecCCC----------CCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 004205 509 GPNALNPEILKPDVTAPGLNIIAAWSPAV----------GKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAI 578 (768)
Q Consensus 509 Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~----------~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L 578 (768)
||+...++++||||+|||++|+|+|+... ....|..+||||||||||||+||||||+||+|||++||++|
T Consensus 376 GP~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaL 455 (649)
T 3i6s_A 376 GPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAM 455 (649)
T ss_dssp SSCTTCTTSCSCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred CCCCCCCCccCCeEEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99987789999999999999999998631 22579999999999999999999999999999999999999
Q ss_pred HhhcccccCCCCCccCCCCCCCCCCCcccccccCccccCCCCeeecCCCcchhhhhhccCCCccceeEeecCCCc--CCC
Q 004205 579 MTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDNSK--CSQ 656 (768)
Q Consensus 579 ~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l~~~~~~~~y~~~~~~~g~~~~~~~~~~~~~~~--~~~ 656 (768)
|+||.++++.+.|+.+.....+++++.||+|+||+.+|++||||||.+++||+.|||++||+.++|+.+++++.+ |+.
T Consensus 456 mtTA~~~~~~g~~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~~ 535 (649)
T 3i6s_A 456 MTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSN 535 (649)
T ss_dssp HHTCBCBCTTSSBCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CCC
T ss_pred hcccccccCCCCcccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCCcCCCCC
Confidence 999999999999998875677889999999999999999999999999999999999999999999999999888 975
Q ss_pred CCCCCCCCCCCeEEecC-CCcc-----EEEEEEEEecCCCceeEEEEEeCCCceEEEEecCEEEEcCCCeEEEEEEEEEe
Q 004205 657 KLPAPYDLNYPSITVPN-LKGN-----FSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKL 730 (768)
Q Consensus 657 ~~~~~~~ln~ps~~~~~-~~~~-----~t~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~ 730 (768)
.+.|||||||++.. +.+. ++|+|||||+|+...+|++.++.|.|++|+|+|.+|+|.+.+|+++|+|||+.
T Consensus 536 ---~~~~lNyPs~~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~ 612 (649)
T 3i6s_A 536 ---PSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRY 612 (649)
T ss_dssp ---CCCCCCCSSEEEEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEE
T ss_pred ---chhhcCCCcEEeecccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEe
Confidence 56799999999987 6666 89999999999989999999999999999999999999888999999999997
Q ss_pred cCC-CCceEEEEEEEEc--CceEEEEEEEEEEe
Q 004205 731 TSP-PKGYGFGYLSWKN--GKLRVTSPLVVQVA 760 (768)
Q Consensus 731 ~~~-~~~~~~G~i~~~~--~~~~v~~P~~~~~~ 760 (768)
... ...|.||+|+|++ ++|.||+||+|++.
T Consensus 613 ~~~~~~~~~fg~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 613 IGDEGQSRNVGSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp CCC---CCCEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred cccCCCceEEEEEEEEcCCCCeEEEEeEEEEEc
Confidence 533 4568999999999 89999999999864
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-110 Score=971.02 Aligned_cols=603 Identities=43% Similarity=0.780 Sum_probs=507.2
Q ss_pred CCCCcccccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEE
Q 004205 119 TTHSWDFMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGAR 198 (768)
Q Consensus 119 ~~~s~~~~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~ 198 (768)
++++|+|+||+ ..+|.+..+| +||+|||||||||++||+|+++++++++.+|+|.|+.+.+|. ||+|++|++
T Consensus 1 tt~s~~flGl~----~~~~~~~~~G-~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~~---~n~k~ig~~ 72 (621)
T 3vta_A 1 TTRSWDFLGFP----LTVPRRSQVE-SNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFR---CNRKIIGAR 72 (621)
T ss_dssp CCSHHHHTTCC----TTCCCCHHHH-TTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSCC---CCSSEEEEE
T ss_pred CCCChhHcCCC----ccccccCCCC-CCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCcc---cCcceeeee
Confidence 57899999996 3688888889 999999999999999999999999999999999999999886 999999999
Q ss_pred eccCCccccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHH
Q 004205 199 YYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLA 278 (768)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ 278 (768)
+|..+.... +.+..+++|++||||||||||||+..++.+..|++.+.++||||+|+|++||+|++.+|..+++++
T Consensus 73 ~~~~~~~~~-----~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~di~~ 147 (621)
T 3vta_A 73 SYHIGRPIS-----PGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILA 147 (621)
T ss_dssp ECCCSSSCC-----TTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTEECHHHHHH
T ss_pred ecccCCccC-----CCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCCCCHHHHHH
Confidence 998764432 334467889999999999999999988888888888889999999999999999998999999999
Q ss_pred HHHHHHHcCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCcccee
Q 004205 279 AFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTS 357 (768)
Q Consensus 279 ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~ 357 (768)
||++|+++|+||||||||+.. +.++..+++++++++|.++||+||+||||+|+ ..++++.+||+++|++++.++.+..
T Consensus 148 a~~~a~~~g~dVin~SlG~~~-~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~ 226 (621)
T 3vta_A 148 AYDDAIADGVDIISLSVGGAN-PRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVT 226 (621)
T ss_dssp HHHHHHHHTCSEEEECCCCCC-GGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEE
T ss_pred HHHHHHHhCCCEEEecCCCCC-CCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeecccccee
Confidence 999999999999999999876 44567789999999999999999999999999 8899999999999999999999999
Q ss_pred eEEeCCCceEecccc-----cccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHH
Q 004205 358 EIVLGDGANFTGESL-----SLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRK 432 (768)
Q Consensus 358 ~~~~~~~~~~~g~~~-----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k 432 (768)
.+.++++..+.+.++ ..+++++..+..... ........|.+..+++.+++|||++|.+. +..+
T Consensus 227 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v~gkivl~~~~------~~~~ 294 (621)
T 3vta_A 227 QVQIGNGQSFQGVSINTFDNQYYPLVSGRDIPNTG------FDKSTSRFCTDKSVNPNLLKGKIVVCEAS------FGPH 294 (621)
T ss_dssp EEEETTSCEEEEBCCCCSCCEEECEEETTTSCCTT------CCHHHHTTTCTTCSCGGGTTTSEEECSSC------CCHH
T ss_pred eEEeccCceeeeeecccCCCccccccccccccccc------ccccccccccccccccccccceEEEEecC------CChh
Confidence 999999999988877 344555443322211 23344677999999999999999999742 3456
Q ss_pred HHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCC
Q 004205 433 SMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNA 512 (768)
Q Consensus 433 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 512 (768)
..+....|+.+++++++... ..+.+.+|...++..++..++.|+..+..+.+++....+.. ....+.++.||||||+.
T Consensus 295 ~~~~~~~Ga~gvi~~~~~~~-~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~~-~~~~~~va~FSSrGP~~ 372 (621)
T 3vta_A 295 EFFKSLDGAAGVLMTSNTRD-YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTIL-NASAPVVVSFSSRGPNR 372 (621)
T ss_dssp HHHHHHTTCSEEEEECSCCS-SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEEE-CTTCCCBCTTSCCCSCT
T ss_pred HHhhhhcceeEEEEEecCCC-cccccccceEEECHHHHHHHHHHHhccCCcceEEecceEec-cCCCCceeeecCCCCCC
Confidence 67777889999999987654 44567899999999999999999999999988887666554 45678999999999998
Q ss_pred CCCCcccCceeeCCceEEEEecCC------CCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhccccc
Q 004205 513 LNPEILKPDVTAPGLNIIAAWSPA------VGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALD 586 (768)
Q Consensus 513 ~~~~~~KPDI~APG~~I~Sa~~~~------~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~ 586 (768)
..++++||||+|||++|+|+|+.. .....|..|||||||||||||+||||||+||+|+|++||++||+||++++
T Consensus 373 ~~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~ 452 (621)
T 3vta_A 373 ATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMN 452 (621)
T ss_dssp TCTTSCSCCEEEECSSEEEECCSSSCBTTBCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCC
T ss_pred CCCCeeccccccCCcceEeecCccccccCcCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCccc
Confidence 778999999999999999999743 12456999999999999999999999999999999999999999999775
Q ss_pred CCCCCccCCCCCCCCCCCcccccccCccccCCCCeeecCCCcchhhhhhccCCCccceeEeecCCCcCCC-CCCCCCCCC
Q 004205 587 KNHKPITVDPKGRRGNAFDYGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRDNSKCSQ-KLPAPYDLN 665 (768)
Q Consensus 587 ~~g~p~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l~~~~~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~ln 665 (768)
..+ .+..+++||+|+||+.+|++||||||.+.+||+.|||++||+.++++.++++...|+. ......|||
T Consensus 453 ~~~---------~~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lN 523 (621)
T 3vta_A 453 ARF---------NPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLN 523 (621)
T ss_dssp TTT---------CTTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC-----------------------------CGGGSC
T ss_pred ccC---------CCCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccccccCCCCcCcccccc
Confidence 433 3566789999999999999999999999999999999999999999999999888855 445678999
Q ss_pred CCeEEec---CCCccEEEEEEEEecCCCceeEEEEEeCCCceEEEEecCEEEEcCCCeEEEEEEEEEecCCCCceEEEEE
Q 004205 666 YPSITVP---NLKGNFSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLTSPPKGYGFGYL 742 (768)
Q Consensus 666 ~ps~~~~---~~~~~~t~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~i 742 (768)
||||++. ++..+++++|||||+|....+|+++++.|.|++|+|+|.+|+|.+.+|+++|+|||+. ...+.|+||+|
T Consensus 524 ~pS~~v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~-~~~~~~~~g~l 602 (621)
T 3vta_A 524 YPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG-SIKGFVVSASL 602 (621)
T ss_dssp CSSEEEECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEE-CCCSSEEEEEE
T ss_pred cccEEEEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEe-cCCCceEEEEE
Confidence 9999985 4567899999999999999999999999999999999999999988999999999986 34677999999
Q ss_pred EEEcCceEEEEEEEEEE
Q 004205 743 SWKNGKLRVTSPLVVQV 759 (768)
Q Consensus 743 ~~~~~~~~v~~P~~~~~ 759 (768)
+|+|++|.||+||+|+.
T Consensus 603 ~w~d~~h~Vr~Pi~v~~ 619 (621)
T 3vta_A 603 VWSDGVHYVRSPITITS 619 (621)
T ss_dssp EEECSSCCCEEEEEEEC
T ss_pred EEEcCCEEEEeCEEEEE
Confidence 99999999999999985
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-81 Score=761.66 Aligned_cols=528 Identities=22% Similarity=0.290 Sum_probs=415.5
Q ss_pred CCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCC----------ccccCCceeEEEEecc
Q 004205 132 ESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAF----------NASSCNRKVIGARYYM 201 (768)
Q Consensus 132 ~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f----------~~~~~n~ki~g~~~~~ 201 (768)
++..+|.++.+| +||+|||||||||++||+|.+ +..|++.|.....| .+.+||+|++++++|.
T Consensus 5 ~~~~~w~~~~~G-~GV~VaVIDTGId~~Hp~f~~------~~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~ 77 (926)
T 1xf1_A 5 QVKTLQEKAGKG-AGTVVAVIDAGFDKNHEAWRL------TDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYS 77 (926)
T ss_dssp CCHHHHHHHCSC-TTCEEEEEESCCTTCCCCCSC------CSCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESC
T ss_pred ccHHHHhccCCC-CCcEEEEEecCCCCCCHhHcC------CCCCcccccchhhhcccccccCcccccccCcccceeeccc
Confidence 455899999999 999999999999999999984 34566666543222 2457999999999997
Q ss_pred CCccccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC--CCHHHHHHH
Q 004205 202 SGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG--CYDVDLLAA 279 (768)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g--~~~~~i~~a 279 (768)
++. ...|..||||||||||||+...+.+. .+.+.||||+|+|++||+++..+ +..+++++|
T Consensus 78 ~~~-------------~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~~~~~~~i~~A 140 (926)
T 1xf1_A 78 KDG-------------KTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQA 140 (926)
T ss_dssp CCS-------------CCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCHHHHHHHHHHH
T ss_pred cCC-------------CCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCCCCcHHHHHHH
Confidence 641 12288999999999999987544321 24679999999999999998766 456789999
Q ss_pred HHHHHHcCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-C---------------CCcccCCCce
Q 004205 280 FDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-E---------------GSVTNLAPWM 343 (768)
Q Consensus 280 i~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~---------------~~~~~~~p~v 343 (768)
|+||+++|+||||||||......+...++++.+++.|.++||+||+||||+|. . ...++.+||+
T Consensus 141 i~~Ai~~gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~v 220 (926)
T 1xf1_A 141 IRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADST 220 (926)
T ss_dssp HHHHHHTTCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCS
T ss_pred HHHHHHhCCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCce
Confidence 99999999999999999875223455678899999999999999999999995 1 1234558999
Q ss_pred EEEcccCCCccceeeEEe-CCCceEecccc---------cccccccchhccccccccccccCcccCCccCcCCCCCCCCC
Q 004205 344 FTIAASSTDRDFTSEIVL-GDGANFTGESL---------SLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKAR 413 (768)
Q Consensus 344 itVgAs~~~~~~~~~~~~-~~~~~~~g~~~---------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 413 (768)
|+|||++.++.+...+.+ +++....+.++ ..+|+++. ...|.+..+ .+++
T Consensus 221 itVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~------------------~~g~~~~~~--~~v~ 280 (926)
T 1xf1_A 221 LTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYA------------------NRGTKEDDF--KDVK 280 (926)
T ss_dssp EEEEEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEEC------------------TTSCSTTTT--TTCT
T ss_pred EEEeccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEEC------------------CCCCCccch--hhcC
Confidence 999999999998888877 55543333322 23444433 123766555 6899
Q ss_pred CeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC----CCccceeeEEEechhhHHHHHHHHhccCccEEEEec
Q 004205 414 GKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD----VAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFP 489 (768)
Q Consensus 414 gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~----~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~ 489 (768)
|||+||+ ||.|.+.+|..+++.+|++|+|++|+.... .....++|+..++..++.+|++ ....++++..
T Consensus 281 Gkivl~~---rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~~~~ti~~~~ 353 (926)
T 1xf1_A 281 GKIALIE---RGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----NPQKTITFNA 353 (926)
T ss_dssp TSEEEEE---CCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----CSSCEEEECS
T ss_pred CeEEEEE---CCCCCHHHHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh----CCceEEEecc
Confidence 9999999 578999999999999999999999987654 3456789999999999998884 3333444433
Q ss_pred CeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHH----h
Q 004205 490 AKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKA----V 565 (768)
Q Consensus 490 ~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~ 565 (768)
..........+.++.||||||+. ++++||||+|||++|+|+++. +.|..+||||||||||||+||||+| +
T Consensus 354 ~~~~~~~~~~~~~a~FSSrGp~~--~~~lKPDI~APG~~I~sa~~~----~~y~~~SGTSMAaPhVAG~aALl~q~~k~~ 427 (926)
T 1xf1_A 354 TPKVLPTASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVAN----NKYAKLSGTSMSAPLVAGIMGLLQKQYETQ 427 (926)
T ss_dssp SCEEEECSSCSBCCTTSCCCBCT--TSCBSCCEEEECCCEEESSSC----SSSCEEESCTTHHHHHHHHHHHHHHHHHHS
T ss_pred cceecccCCcceeccccCCCCCC--CCccCceEECCCCCEEeeccC----CcceecCccchhHHHHHHHHHHHHHHHhcc
Confidence 33334456678999999999996 899999999999999999974 4699999999999999999999964 5
Q ss_pred CCCCCHHH----HHHHHHhhcccccCCCCCccCCCCCCCCCCCcccccccCccccCCCCeeecCCCcchhhhhhccCCCc
Q 004205 566 HPSWSPSA----IKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGYDE 641 (768)
Q Consensus 566 ~p~lsp~~----ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l~~~~~~~~y~~~~~~~g~~~ 641 (768)
||+|+|+| ||++||+||++++..+ ....+++++||+|+||+.+|+++.+ |||..+++.
T Consensus 428 ~P~~sp~~~~~~Iks~L~~TA~~~~~~~-------~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~ 489 (926)
T 1xf1_A 428 YPDMTPSERLDLAKKVLMSSATALYDED-------EKAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTS 489 (926)
T ss_dssp SSSSHHHHHHHHHHHHHHHHSBCCEEGG-------GTEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSC
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCcccCC-------CCccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCc
Confidence 99999997 9999999999764321 1235678999999999999999843 678766543
Q ss_pred cceeEeecCCCcCCCCCCCCCCCCCCeEEecCCCccEEEEEEEEecCCC--ceeEEEEEeC--CCceEEEEecCEEEEc-
Q 004205 642 KSLHLVTRDNSKCSQKLPAPYDLNYPSITVPNLKGNFSVTRSVTNVGKP--RSIYKAVVSS--PVGVTVTVAPERLIFN- 716 (768)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~t~~~tv~N~~~~--~~ty~~~~~~--~~g~~v~~~p~~~~~~- 716 (768)
. ++.+.++.+.++++|||+|+|+. ..+|++++.. +.+..++++|..|.|.
T Consensus 490 ~-------------------------~i~l~~~~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~ 544 (926)
T 1xf1_A 490 S-------------------------KVHLNNVSDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETS 544 (926)
T ss_dssp S-------------------------CEEEEEECSEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred c-------------------------eeeccccCccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEecc
Confidence 2 34455556788999999999985 4568877764 6788888888766543
Q ss_pred ------CCCeEEEEEEEEEecC---------CCCceEEEEEEEE--cCce-EEEEEEEEEE
Q 004205 717 ------SYGQKINFTVHFKLTS---------PPKGYGFGYLSWK--NGKL-RVTSPLVVQV 759 (768)
Q Consensus 717 ------~~~~~~~~~vt~~~~~---------~~~~~~~G~i~~~--~~~~-~v~~P~~~~~ 759 (768)
++||+++|+|||+++. ..+.|+||+|+|+ ++.| .||+||+++.
T Consensus 545 ~~~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~ 605 (926)
T 1xf1_A 545 WQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFR 605 (926)
T ss_dssp CEEEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEE
T ss_pred CCeEEECCCCEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEe
Confidence 4599999999999751 2345899999999 4556 4999999984
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-62 Score=555.41 Aligned_cols=362 Identities=30% Similarity=0.421 Sum_probs=288.8
Q ss_pred CCCcEEEEEeCCCCCCCCchhhHhHHHHHHHHhcCcccccccceEEEecceeeEEEEEeCHHHHHHH-----------hc
Q 004205 34 FSAKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQI-----------AQ 102 (768)
Q Consensus 34 ~~~~~yiV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L-----------~~ 102 (768)
...-+|||+|++.. ..+...++++.+ ..++.++|. .|+||+++++++++++| ++
T Consensus 33 ~~~~~~iV~~~~~~------~~~~~~~~~~~~--------g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~ 97 (539)
T 3afg_A 33 DQEVSTIIMFDNQA------DKEKAVEILDFL--------GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQ 97 (539)
T ss_dssp TCEEEEEEEESSHH------HHHHHHHHHHHH--------TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCC
T ss_pred cCceEEEEEECCCC------CHHHHHHHHHhc--------CCeEEEEee-eeeEEEEEeCHHHHHHHHhhcccccccccc
Confidence 34567999999763 122223333332 367889997 79999999999999999 89
Q ss_pred CCCeEEEEecceeccCCCCCcccccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccC
Q 004205 103 MPGVVSVFPNMKRRLHTTHSWDFMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESG 182 (768)
Q Consensus 103 ~p~V~~V~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~ 182 (768)
+|+|++|++++.+++.............+++..+|..+.+| +||+|||||||||++||+|.+
T Consensus 98 ~~~V~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G-~gv~VaViDtGid~~Hpdl~~----------------- 159 (539)
T 3afg_A 98 LSGVQFIQEDYVVKVAVETEGLDESAAQVMATNMWNLGYDG-SGITIGIIDTGIDASHPDLQG----------------- 159 (539)
T ss_dssp CTTEEEEEECCEEECC-----------CCBCSCCBCCSCCC-TTCEEEEEESBCCTTSGGGTT-----------------
T ss_pred CCCeeEEEecccccccCccccCCccccccCcHhHHhcCCCC-CCcEEEEEecCCCCCChHHhC-----------------
Confidence 99999999999988753321000112234567899999999 999999999999999999952
Q ss_pred CCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEee
Q 004205 183 EAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAV 262 (768)
Q Consensus 183 ~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~ 262 (768)
+++++++|.++. ..+.|++||||||||||||+.... .+.+.||||+|+|+.
T Consensus 160 ----------~i~~~~d~~~~~------------~~~~D~~gHGThVAgiiag~~~~~-------~g~~~GvAp~A~l~~ 210 (539)
T 3afg_A 160 ----------KVIGWVDFVNGK------------TTPYDDNGHGTHVASIAAGTGAAS-------NGKYKGMAPGAKLVG 210 (539)
T ss_dssp ----------TEEEEEETTTCC------------SSCCBSSSHHHHHHHHHHCCCGGG-------TTTTCCSCTTCEEEE
T ss_pred ----------CEeeeEECCCCC------------CCCCCCCCCHHHHHHHHhCcCccC-------CCCEEEECCCCEEEE
Confidence 466666765431 346788999999999999976431 234689999999999
Q ss_pred eeeecCCC-CCHHHHHHHHHHHHHc----CCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-C--C
Q 004205 263 YKTCWDSG-CYDVDLLAAFDDAIRD----GVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-E--G 334 (768)
Q Consensus 263 ~kv~~~~g-~~~~~i~~ai~~a~~~----g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~--~ 334 (768)
+|++++.+ +..+++++||+||+++ |++|||||||.... ....+++..+++++.++|++||+||||+|. . .
T Consensus 211 ~kv~~~~g~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~~--~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~ 288 (539)
T 3afg_A 211 IKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQS--SDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTV 288 (539)
T ss_dssp EECSCTTSEEEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCSC--CCSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCC
T ss_pred EEeecCCCCcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCCC--CccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcc
Confidence 99998776 7789999999999975 89999999998752 245678889999999999999999999997 3 3
Q ss_pred CcccCCCceEEEcccCCCccceeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCC
Q 004205 335 SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARG 414 (768)
Q Consensus 335 ~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g 414 (768)
..|+..+++|+|||++.
T Consensus 289 ~~Pa~~~~vitVgA~~~--------------------------------------------------------------- 305 (539)
T 3afg_A 289 GSPAAASKVITVGAVDK--------------------------------------------------------------- 305 (539)
T ss_dssp CTTTTCSSSEEEEEECT---------------------------------------------------------------
T ss_pred cCCccCCceEEEeeecC---------------------------------------------------------------
Confidence 56788899999997431
Q ss_pred eEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeec
Q 004205 415 KVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVL 494 (768)
Q Consensus 415 kivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~ 494 (768)
T Consensus 306 -------------------------------------------------------------------------------- 305 (539)
T 3afg_A 306 -------------------------------------------------------------------------------- 305 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCC--C---CcceEEeccccchhHHHHHHHHHHHHhCCCC
Q 004205 495 GSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAV--G---KMQFNILSGTSMACPHVTGIATLIKAVHPSW 569 (768)
Q Consensus 495 ~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~--~---~~~y~~~sGTSmAaP~VAG~aALl~q~~p~l 569 (768)
.+.++.||||||+. ++++||||+|||++|+++++... + ...|..++|||||||||||++|||+|++|+|
T Consensus 306 ----~~~~a~fSs~Gp~~--~~~~kpdi~APG~~I~s~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~ 379 (539)
T 3afg_A 306 ----YDVITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHVAGIAALLLQAHPSW 379 (539)
T ss_dssp ----TSCBCSSSCCCCCT--TCBCCCSEEEECSSEEEECCTTCCCSEECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ----CcccccccCCCCCC--CCCCcccEecCcCCEEeeccCCCCCCCCCcccccccCchHHHHHHHHHHHHHHHHHCCCC
Confidence 14688999999997 89999999999999999986321 1 1259999999999999999999999999999
Q ss_pred CHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcccccccCccccCCC
Q 004205 570 SPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLSP 619 (768)
Q Consensus 570 sp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 619 (768)
+|++||++|++||++++.. ..+++.||+|+||+.+|++.
T Consensus 380 s~~~vk~~L~~tA~~~~~~-----------~~~~~~~G~G~vn~~~Al~~ 418 (539)
T 3afg_A 380 TPDKVKTALIETADIVKPD-----------EIADIAYGAGRVNAYKAAYY 418 (539)
T ss_dssp CHHHHHHHHHHHSBCSSGG-----------GCSBTTTBTCBCCHHHHHTG
T ss_pred CHHHHHHHHHhhCccCCCC-----------CCCccCccCCccCHHHHhhh
Confidence 9999999999999975321 13467899999999999984
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-59 Score=519.91 Aligned_cols=344 Identities=24% Similarity=0.342 Sum_probs=279.5
Q ss_pred CCcEEEEEeCCCCCCCCchhhHhHHHHHHHHhcCcccccccceEEEecceeeEEEEEeCHHHHHHHhcCCCeEEEEecce
Q 004205 35 SAKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMK 114 (768)
Q Consensus 35 ~~~~yiV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~V~~~~~ 114 (768)
++.+|||+||+... ..++++ ....++.++|. .+++|+++++++++++|+++|+|++|++++.
T Consensus 1 ~~~~~iV~~~~~~~---------~~~~~~--------~~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~ 62 (395)
T 2z2z_A 1 NTIRVIVSVDKAKF---------NPHEVL--------GIGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQ 62 (395)
T ss_dssp CEEEEEEEECTTTC---------CHHHHH--------HTTCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCE
T ss_pred CcEEEEEEECCCcc---------HHHHHH--------HcCCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeee
Confidence 35789999998741 112222 23467889997 5999999999999999999999999999998
Q ss_pred eccCCCCC-----------cccccccccCCCCcCCCCCCCCcc--eEEEEEeCCCCCCCCCCCCCCCCCCCCcccccccc
Q 004205 115 RRLHTTHS-----------WDFMGLMGEESMEIPGFSTKNQVN--IIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCES 181 (768)
Q Consensus 115 ~~~~~~~s-----------~~~~g~~~~~~~~~~~~~~~Gg~G--V~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~ 181 (768)
+++..... ...|+++.++++.+|..+ +| +| |+|||||||||++||+|.+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~~w~~~-~G-~g~~v~VaViDtGid~~Hp~l~~---------------- 124 (395)
T 2z2z_A 63 AVLLGKPSWLGGGSTQPAQTIPWGIERVKAPSVWSIT-DG-SVSVIQVAVLDTGVDYDHPDLAA---------------- 124 (395)
T ss_dssp EEECCEECC------CCSCCCCHHHHHTTCGGGGGTC-SS-CCTTCEEEEEESCBCTTCTTTGG----------------
T ss_pred ecccCCCCcccccccCccccCCcchhhcCHHHHHhhc-CC-CCCcEEEEEEcCCCCCCChhHhh----------------
Confidence 87643211 234677777888999998 89 99 9999999999999999963
Q ss_pred CCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEe
Q 004205 182 GEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIA 261 (768)
Q Consensus 182 ~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~ 261 (768)
++...++|.++.... +..+..|.+||||||||||+|.. ++ . .+.||||+|+|+
T Consensus 125 -----------~~~~~~~~~~~~~~~-------~~~~~~d~~gHGT~vAgiia~~~-n~---~-----g~~GvAp~a~l~ 177 (395)
T 2z2z_A 125 -----------NIAWCVSTLRGKVST-------KLRDCADQNGHGTHVIGTIAALN-ND---I-----GVVGVAPGVQIY 177 (395)
T ss_dssp -----------GEEEEEECGGGCCBC-------CHHHHBCSSSHHHHHHHHHHCCC-SS---S-----SCCCSSTTCEEE
T ss_pred -----------ccccCccccCCcccC-------CCCCCCCCCCCHHHHHHHHHeec-CC---C-----ceEEECCCCEEE
Confidence 234444554331100 00124578999999999999973 21 2 248999999999
Q ss_pred eeeeecCCC-CCHHHHHHHHHHHHHc--------------------CCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCC
Q 004205 262 VYKTCWDSG-CYDVDLLAAFDDAIRD--------------------GVHILSLSLGPEAPQGDYFSDAISIGSFHATSRG 320 (768)
Q Consensus 262 ~~kv~~~~g-~~~~~i~~ai~~a~~~--------------------g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~G 320 (768)
.+|++++.+ +..+++++||+||+++ +++|||||||... ....+..+++++.++|
T Consensus 178 ~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~-----~~~~~~~ai~~a~~~g 252 (395)
T 2z2z_A 178 SVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA-----DDSYLYDMIIQAYNAG 252 (395)
T ss_dssp EEECSCTTSEEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSC-----CCHHHHHHHHHHHHTT
T ss_pred EEEEecCCCCccHHHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCC-----CCHHHHHHHHHHHHCC
Confidence 999998776 7788999999999998 9999999999874 2356778888899999
Q ss_pred cEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeEEeCCCceEecccccccccccchhccccccccccccCcccC
Q 004205 321 ILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQS 399 (768)
Q Consensus 321 i~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 399 (768)
++||+||||+|. ....|+..+++|+|||++.
T Consensus 253 v~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------------------------------------------ 284 (395)
T 2z2z_A 253 IVIVAASGNEGAPSPSYPAAYPEVIAVGAIDS------------------------------------------------ 284 (395)
T ss_dssp CEEEEECCSSCCSSCCBTTTSTTEEEEEEECT------------------------------------------------
T ss_pred CEEEEECCCCCCCCCCCccCCCCEEEEEEecC------------------------------------------------
Confidence 999999999998 6788899999999998531
Q ss_pred CccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhc
Q 004205 400 SYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISH 479 (768)
Q Consensus 400 ~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 479 (768)
T Consensus 285 -------------------------------------------------------------------------------- 284 (395)
T 2z2z_A 285 -------------------------------------------------------------------------------- 284 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHH
Q 004205 480 TSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIA 559 (768)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~a 559 (768)
.+.++.||+||| +|+|||++|+|+++. +.|..++|||||||||||++
T Consensus 285 -------------------~~~~a~fS~~G~----------~v~APG~~i~s~~~~----~~y~~~sGTS~AaP~VaG~a 331 (395)
T 2z2z_A 285 -------------------NDNIASFSNRQP----------EVSAPGVDILSTYPD----DSYETLMGTAMATPHVSGVV 331 (395)
T ss_dssp -------------------TSCBCTTSCSSC----------SEEEECSSEEEEETT----TEEEEEESHHHHHHHHHHHH
T ss_pred -------------------CCCCCcccCCCC----------CEEeCCCCeeeecCC----CceEecCCHHHHHHHHHHHH
Confidence 256889999998 679999999999984 56999999999999999999
Q ss_pred HHHHHhCC-------------CCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcccccccCccccCCC
Q 004205 560 TLIKAVHP-------------SWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLSP 619 (768)
Q Consensus 560 ALl~q~~p-------------~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 619 (768)
|||+|++| .|++.+||++|++||+++.. ...+..||||+||+.+|++.
T Consensus 332 All~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~------------~g~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 332 ALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGP------------TGWDADYGYGVVRAALAVQA 392 (395)
T ss_dssp HHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSS------------SSSBTTTBTCBCCHHHHHHH
T ss_pred HHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCC------------CCCCCCccCceeCHHHHHHH
Confidence 99999999 99999999999999997532 22456899999999999863
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-56 Score=505.93 Aligned_cols=358 Identities=19% Similarity=0.215 Sum_probs=276.5
Q ss_pred CCcEEEEEeCCCCCCCCchhhHhHHHHHHHHhcCcccccccceEEEecceeeEEEEEeCHHHHHHHhc-CCCeEEEEecc
Q 004205 35 SAKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQIAQ-MPGVVSVFPNM 113 (768)
Q Consensus 35 ~~~~yiV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L~~-~p~V~~V~~~~ 113 (768)
..+.|||++++.. ...+++++ .+.++.+.|. .|++|+++++++++++|++ +|+|++|++++
T Consensus 43 ~~~~yiv~~~~~~---------~~~~~~~~--------~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~ 104 (471)
T 3t41_A 43 EELYYSVEYKNTA---------TFNKLVKK--------KSLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATC 104 (471)
T ss_dssp CCEEEEEEESCHH---------HHHHHHHH--------HTCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECC
T ss_pred CceEEEEEcCCHH---------HHHHHHHh--------CCCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecc
Confidence 4567999877542 22223332 3467788886 5999999999999999999 99999999998
Q ss_pred eeccCCCCC----------cccccccccCCC-CcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccC
Q 004205 114 KRRLHTTHS----------WDFMGLMGEESM-EIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESG 182 (768)
Q Consensus 114 ~~~~~~~~s----------~~~~g~~~~~~~-~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~ 182 (768)
.+++..... ...|++..+... .+|+.+.+| +||+|||||||||++||+|.+... .
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~~~~G-~gv~VaViDtGid~~Hp~~~~~~~-------~------ 170 (471)
T 3t41_A 105 STCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDDLPKH-ANTKIAIIDTGVMKNHDDLKNNFS-------T------ 170 (471)
T ss_dssp SSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGGCCSS-CCCCEEEEESCCCTTCTTTTTTBC-------T------
T ss_pred eeccccccccccCCCCccccccccHhhccCcHHHHhccCCC-CCcEEEEEeCCCCCCChhHhcCcc-------c------
Confidence 887754321 123555555554 789999999 999999999999999999975311 1
Q ss_pred CCCccccCCceeEEEEeccCCccccc-cccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEe
Q 004205 183 EAFNASSCNRKVIGARYYMSGYEAEE-DIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIA 261 (768)
Q Consensus 183 ~~f~~~~~n~ki~g~~~~~~~~~~~~-~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~ 261 (768)
+.+.+..+..... ......+...+.|..||||||||||+|++ .+.||||+|+|+
T Consensus 171 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiiaa~g------------~~~GvAp~a~l~ 225 (471)
T 3t41_A 171 -------------DSKNLVPLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTSANG------------KLIGVAPNNKFT 225 (471)
T ss_dssp -------------TCEECCCTTCGGGCCTTCCCCTTCCCCSSSHHHHHHHHHHCBS------------SSBCSSTTSCEE
T ss_pred -------------CCcccccCCCccCCCcccCCCCCCCcCCCCccchhhheeecCC------------ceeEECCCCeEE
Confidence 0111111100000 00001122356789999999999999864 248999999999
Q ss_pred eeeeecCCCCCHHHHHHHHHHHHHcCCcEEEeccCCCCC------CC-----CCchhHHHHHHHHhhcCCcEEEEeccCC
Q 004205 262 VYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPEAP------QG-----DYFSDAISIGSFHATSRGILVVASAGNE 330 (768)
Q Consensus 262 ~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~------~~-----~~~~~~~~~a~~~a~~~Gi~vV~AAGN~ 330 (768)
.+|++++..+..+++++||+||+++|++|||||||.... .. ....+.+..+++.+.++|++||+||||+
T Consensus 226 ~~kv~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~ 305 (471)
T 3t41_A 226 MYRVFGSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGND 305 (471)
T ss_dssp EEECCSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSS
T ss_pred EEEeccCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 999998877889999999999999999999999997420 00 0234678888999999999999999999
Q ss_pred CC-CC------------------CcccCCCceEEEcccCCCccceeeEEeCCCceEecccccccccccchhccccccccc
Q 004205 331 GN-EG------------------SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYA 391 (768)
Q Consensus 331 g~-~~------------------~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~ 391 (768)
|. .. ..|+.++++|+|||++.
T Consensus 306 g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~~---------------------------------------- 345 (471)
T 3t41_A 306 GIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQ---------------------------------------- 345 (471)
T ss_dssp CCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEEEEEECT----------------------------------------
T ss_pred CcCCCcccccccccccccCCceeeccccCCCeEEEEeeCC----------------------------------------
Confidence 98 32 26778889999997531
Q ss_pred cccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHH
Q 004205 392 GYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGN 471 (768)
Q Consensus 392 ~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~ 471 (768)
T Consensus 346 -------------------------------------------------------------------------------- 345 (471)
T 3t41_A 346 -------------------------------------------------------------------------------- 345 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCce----------------------E
Q 004205 472 KILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLN----------------------I 529 (768)
Q Consensus 472 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~----------------------I 529 (768)
.+.++.||+|||+. |||+|||++ |
T Consensus 346 ---------------------------~~~~a~fS~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i 391 (471)
T 3t41_A 346 ---------------------------KSNLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENI 391 (471)
T ss_dssp ---------------------------TSSBCTTCCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSE
T ss_pred ---------------------------CCCCCCccCCCCCC-------CeEEecCCCcccccccccccccccccccCcee
Confidence 25688999999974 599999987 9
Q ss_pred EEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCC-CCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcccc
Q 004205 530 IAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHP-SWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGS 608 (768)
Q Consensus 530 ~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~ 608 (768)
+++++. +.|..++|||||||||||++|||+|++| .++|++||++|++||.+.. ..++..|||
T Consensus 392 ~s~~~~----~~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~-------------~~~~~~~G~ 454 (471)
T 3t41_A 392 LTTANN----GRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKN-------------NKPFSRYGH 454 (471)
T ss_dssp EEECTT----SSEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCS-------------CCCHHHHTT
T ss_pred EecCCC----CCEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCC-------------CCCcCcccc
Confidence 999874 5699999999999999999999999999 8999999999999999642 145679999
Q ss_pred cccCccccCCCC
Q 004205 609 GFLNPRKVLSPG 620 (768)
Q Consensus 609 G~vn~~~Al~~~ 620 (768)
|++|+.+|++..
T Consensus 455 G~vd~~~Al~~a 466 (471)
T 3t41_A 455 GELDVYKALNVA 466 (471)
T ss_dssp CBBCHHHHTTTT
T ss_pred ChhCHHHHHHHH
Confidence 999999999853
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-58 Score=529.90 Aligned_cols=334 Identities=19% Similarity=0.189 Sum_probs=57.6
Q ss_pred cEEEEEeCCCCCCCCchhhHhHHHHHHHHhcCcccccccceEEEecceeeEEEEEeCHHHHHHHhcCCCeEEEEecceec
Q 004205 37 KVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKRR 116 (768)
Q Consensus 37 ~~yiV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~V~~~~~~~ 116 (768)
++|||+||+.... ...+.+.++++... . ......++.+.|++.|+||+++++++++++|+++|+|++|++++.+.
T Consensus 76 g~YIV~lk~~~~~---~~~~~~~~~l~a~~-~-~~g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~ 150 (692)
T 2p4e_P 76 GTYVVVLKEETHL---SQSERTARRLQAQA-A-RRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVF 150 (692)
T ss_dssp EEEEEEECTTCCH---HHHHHHHHHHHHHH-H-HTTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEE
T ss_pred CcEEEEECCCCCH---HHHHHHHHHHHHHH-h-hcccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccc
Confidence 4999999987531 13334444444332 0 11124578999999999999999999999999999999999999886
Q ss_pred cCCCCCcccccccccCCC----CcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCc
Q 004205 117 LHTTHSWDFMGLMGEESM----EIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNR 192 (768)
Q Consensus 117 ~~~~~s~~~~g~~~~~~~----~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ 192 (768)
.+ ... |++..+... ..|..+.+| +||+|||||||||++||+|.+... |. +|
T Consensus 151 ~~-~~p---WgL~~i~~~~~~~~~w~~~~~G-~GV~VaVIDTGId~~HpdL~gr~~------~~-------~~------- 205 (692)
T 2p4e_P 151 AQ-SIP---WNLERITPPRYRADEYQPPDGG-SLVEVYLLDTSIQSDHREIEGRVM------VT-------DF------- 205 (692)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred cC-CCC---cchhhcccccccccccccCCCC-CCcEEEEEcCCCCCCChhhcCceE------ec-------cc-------
Confidence 53 223 455443322 368788888 999999999999999999975310 00 01
Q ss_pred eeEEEEeccCCccccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-C
Q 004205 193 KVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-C 271 (768)
Q Consensus 193 ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~ 271 (768)
..+.++ +. ......+.|.+||||||||||+|+. .||||+|+|+++||+++.| +
T Consensus 206 -----~~~~d~-dg------~~~~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G~g 259 (692)
T 2p4e_P 206 -----ENVPEE-DG------TRFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKG 259 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----ccccCC-CC------CcccCCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEeecCCCCC
Confidence 001000 00 0001245689999999999999864 7999999999999998766 7
Q ss_pred CHHHHHHHHHHHHHc------CCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC--CCCcccCCCce
Q 004205 272 YDVDLLAAFDDAIRD------GVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN--EGSVTNLAPWM 343 (768)
Q Consensus 272 ~~~~i~~ai~~a~~~------g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~--~~~~~~~~p~v 343 (768)
+.+++++||+|++++ +++|||||||+.. ...+..+++++.++|++||+||||+|. ....|+..+++
T Consensus 260 ~~s~ii~aI~~a~~~~~~~~~g~~VINmSlGg~~------s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~v 333 (692)
T 2p4e_P 260 TVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGY------SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEV 333 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHhhhhcccCCceEEEecCCCCC------cHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCE
Confidence 788999999999986 8999999999752 345677777889999999999999998 44568889999
Q ss_pred EEEcccCCCccceeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecC
Q 004205 344 FTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAE 423 (768)
Q Consensus 344 itVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~ 423 (768)
|+|||++.+..
T Consensus 334 ItVGA~d~~~~--------------------------------------------------------------------- 344 (692)
T 2p4e_P 334 ITVGATNAQDQ--------------------------------------------------------------------- 344 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEcCCCC---------------------------------------------------------------------
Confidence 99998643210
Q ss_pred CCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccc
Q 004205 424 SSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVA 503 (768)
Q Consensus 424 ~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 503 (768)
....-+
T Consensus 345 --------------------------------------------------------------------------~a~~ss 350 (692)
T 2p4e_P 345 --------------------------------------------------------------------------PVTLGT 350 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------cccccc
Confidence 000012
Q ss_pred cccCCCCCCCCCCcccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 504 AFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 504 ~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
.||+|||. |||+|||++|+|+++. +.+.|..++|||||||||||++|||+|++|+|+|+|||++|++||.
T Consensus 351 ~fSn~G~~--------vDI~APG~~I~St~~~--~~~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~tA~ 420 (692)
T 2p4e_P 351 LGTNFGRC--------VDLFAPGEDIIGASSD--CSTCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSA 420 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCCc--------eeEEecCCcEEeeccC--CCCceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcc
Confidence 38999985 4999999999999984 3356999999999999999999999999999999999999999998
Q ss_pred cc
Q 004205 584 AL 585 (768)
Q Consensus 584 ~~ 585 (768)
+.
T Consensus 421 ~~ 422 (692)
T 2p4e_P 421 KD 422 (692)
T ss_dssp --
T ss_pred cc
Confidence 64
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-56 Score=511.31 Aligned_cols=367 Identities=24% Similarity=0.275 Sum_probs=278.1
Q ss_pred cCCCCcEEEEEeCCCCCCCCchhhHhHHHHHHHHhcCcccccccceEEEecceeeEEEEEeCH----HHHHHHhc--CCC
Q 004205 32 ICFSAKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTD----QQASQIAQ--MPG 105 (768)
Q Consensus 32 ~~~~~~~yiV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~----~~~~~L~~--~p~ 105 (768)
.+..+++|||+||+.. ...++++.+ +.++.+++. .+++++++++. +.+++|++ +|+
T Consensus 27 ~~~~~~~~IV~~k~~~---------~~~~~~~~~--------g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 88 (671)
T 1r6v_A 27 GEYTEGKILVGYNDRS---------EVDKIVKAV--------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKG 88 (671)
T ss_dssp TSBCTTEEEEEESSHH---------HHHHHHHHH--------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSS
T ss_pred CccCCccEEEEECCCc---------CHHHHHHhc--------CCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccCCC
Confidence 3557899999999752 122233332 346777776 78999999864 34567764 899
Q ss_pred eEEEEecceeccCC----C-----------------------CCcccccccccCCCCc-CCCCCCCCcceEEEEEeCCCC
Q 004205 106 VVSVFPNMKRRLHT----T-----------------------HSWDFMGLMGEESMEI-PGFSTKNQVNIIVGFIDTGIW 157 (768)
Q Consensus 106 V~~V~~~~~~~~~~----~-----------------------~s~~~~g~~~~~~~~~-~~~~~~Gg~GV~VgVIDtGid 157 (768)
|++|||+..+++.. . .....|++..+++..+ |+. .+| +||+|||||||||
T Consensus 89 V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I~~~~a~w~~-~tG-~gV~VAVIDTGVd 166 (671)
T 1r6v_A 89 IRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEE-ASG-TNIIVAVVDTGVD 166 (671)
T ss_dssp EEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHH-CSC-TTCEEEEEESCCB
T ss_pred ceEEecCeEEEeccccccCcccccccccccccccccccccccccccCCchhccCCchhhhhc-cCC-CCCEEEEEeCCCC
Confidence 99999997654321 0 0113467777788888 988 789 9999999999999
Q ss_pred CCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCCcchhhhcccccc
Q 004205 158 PESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRY 237 (768)
Q Consensus 158 ~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~ 237 (768)
++||+|.+. .+.+...+.+... + ...+..|.+||||||||||||..
T Consensus 167 ~~HpdL~~~--------------------------~~~g~~~~~~~~~-------p-~~~d~~d~~gHGThVAGiIAa~~ 212 (671)
T 1r6v_A 167 GTHPDLEGQ--------------------------VIAGYRPAFDEEL-------P-AGTDSSYGGSAGTHVAGTIAAKK 212 (671)
T ss_dssp TTSGGGTTT--------------------------BCCEEEGGGTEEE-------C-TTCBCCTTCSHHHHHHHHHHCCC
T ss_pred CCCcccccc--------------------------EEecccccCCCcC-------C-CCCCCccCCCcchhhhhhhhccC
Confidence 999999742 1112222211100 0 01234467899999999999974
Q ss_pred cccccccccCCCcceeccCCCcEeeeeeecC------CC-CCHHHHHHHHHHHHHcCCcEEEeccCCCCCCCCCchhHHH
Q 004205 238 VANMNYRGLAAGGARGGAPMARIAVYKTCWD------SG-CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAIS 310 (768)
Q Consensus 238 ~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~------~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~ 310 (768)
+ + . .+.||||+|+|+.+|+++. .+ ...+.+++||+||+++|++|||||||... ....+.
T Consensus 213 n-g---~-----gv~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~-----~s~~l~ 278 (671)
T 1r6v_A 213 D-G---K-----GIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG-----YSYTMK 278 (671)
T ss_dssp S-S---S-----SCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC-----CCHHHH
T ss_pred C-C---C-----ceEEECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC-----CCHHHH
Confidence 2 1 2 2489999999999999976 22 34567999999999999999999999863 345788
Q ss_pred HHHHHhhcCCcEEEEeccCCCC--CCCcccCCCceEEEcccCCCccceeeEEeCCCceEecccccccccccchhcccccc
Q 004205 311 IGSFHATSRGILVVASAGNEGN--EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIISASE 388 (768)
Q Consensus 311 ~a~~~a~~~Gi~vV~AAGN~g~--~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~ 388 (768)
.++++|.++|++||+||||+|. ....|+..+++|+|||++.+.
T Consensus 279 ~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g----------------------------------- 323 (671)
T 1r6v_A 279 EAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG----------------------------------- 323 (671)
T ss_dssp HHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET-----------------------------------
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCC-----------------------------------
Confidence 8888999999999999999998 467788899999999853110
Q ss_pred ccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEechh
Q 004205 389 AYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKK 468 (768)
Q Consensus 389 ~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~ 468 (768)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T 1r6v_A 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCC-----------
Q 004205 469 TGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAV----------- 537 (768)
Q Consensus 469 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~----------- 537 (768)
....++.|||+||.. ||+|||++|+|+++...
T Consensus 324 -----------------------------~~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~~~~~~~ 366 (671)
T 1r6v_A 324 -----------------------------GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENV 366 (671)
T ss_dssp -----------------------------TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTC
T ss_pred -----------------------------CceeeccccCCCCCe--------eEEecCCCEEeecCCCCccccccccccc
Confidence 002478999999986 99999999999987421
Q ss_pred ---CCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcccccccCcc
Q 004205 538 ---GKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPR 614 (768)
Q Consensus 538 ---~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~vn~~ 614 (768)
.++.|..++|||||||||||++|||+|++|+|+|.+||++|++||+++... ..+..+|+|++|+.
T Consensus 367 ~~~~~~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~------------g~d~~~G~G~vna~ 434 (671)
T 1r6v_A 367 PATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN------------GWDHDTGYGLVKLD 434 (671)
T ss_dssp CCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSS------------SCBTTTBTCBCCHH
T ss_pred cccCCCceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCC------------CCCCCcccceeCHH
Confidence 124699999999999999999999999999999999999999999975322 23468999999999
Q ss_pred ccCCCCeeecCCCcch
Q 004205 615 KVLSPGLIYDAQPIDY 630 (768)
Q Consensus 615 ~Al~~~l~~~~~~~~y 630 (768)
+|++..+..+....+|
T Consensus 435 ~Al~~~l~~~~~~~~~ 450 (671)
T 1r6v_A 435 AALQGPLPTQGGVEEF 450 (671)
T ss_dssp HHHHCCCCSSSEEEEE
T ss_pred HHhhhhcCCCCCccce
Confidence 9999777665544444
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-55 Score=493.56 Aligned_cols=381 Identities=23% Similarity=0.312 Sum_probs=278.7
Q ss_pred cccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCc
Q 004205 125 FMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGY 204 (768)
Q Consensus 125 ~~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~ 204 (768)
.|+++.++++.+|+.+ | +||+|||||||||++||+|.+. .+.+ +.+...
T Consensus 5 ~W~l~~i~~~~~w~~~--g-~gv~VaViDtGvd~~Hp~l~~~--------------------------~~~~-~~~~~~- 53 (441)
T 1y9z_A 5 PWGQTFVGATVLSDSQ--A-GNRTICIIDSGYDRSHNDLNAN--------------------------NVTG-TNNSGT- 53 (441)
T ss_dssp CHHHHHTTCSSSCCTT--G-GGCEEEEEESCCCTTSTTTTTS--------------------------EEEE-CCCTTS-
T ss_pred CCChhhcChhhhhhcC--C-CCcEEEEEcCCCCCCChhHhcC--------------------------cccC-cccCCC-
Confidence 4678888889999875 7 8999999999999999999632 2222 111111
Q ss_pred cccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCC--cEeeeeeecCCC-CCHHHHHHHHH
Q 004205 205 EAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMA--RIAVYKTCWDSG-CYDVDLLAAFD 281 (768)
Q Consensus 205 ~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A--~L~~~kv~~~~g-~~~~~i~~ai~ 281 (768)
.+...+.|..||||||||||+|..+. .| +.||||+| +|+.+|+++..+ +..+++++||+
T Consensus 54 ---------~~~~~~~d~~gHGT~vAgiia~~~~~----~g-----~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~ 115 (441)
T 1y9z_A 54 ---------GNWYQPGNNNAHGTHVAGTIAAIANN----EG-----VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAID 115 (441)
T ss_dssp ---------CCTTCCCSSCCHHHHHHHHHHCCCSS----SB-----CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHH
T ss_pred ---------CCCCCCCCCCCcHHHHHHHHhcccCC----CC-----ceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHH
Confidence 11134668899999999999997621 22 48999995 899999998776 77889999999
Q ss_pred HHHHc-CCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeE
Q 004205 282 DAIRD-GVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEI 359 (768)
Q Consensus 282 ~a~~~-g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~ 359 (768)
||+++ |++|||||||... ....+..++.++.++|++||+||||+|. ....|+..+++|+|||++.+.......
T Consensus 116 ~a~~~~g~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S 190 (441)
T 1y9z_A 116 TCVNSGGANVVTMSLGGSG-----STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFS 190 (441)
T ss_dssp HHHHTTCCSEEEECCCBSC-----CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTS
T ss_pred HHHHhcCCcEEEeCCCCCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccc
Confidence 99999 9999999999874 2346677888899999999999999998 677889999999999998765432221
Q ss_pred EeCC-------------------Cc----eEecccccc---cc--------cccchhccccccccccccCcccCCccCcC
Q 004205 360 VLGD-------------------GA----NFTGESLSL---CK--------MNASARIISASEAYAGYFTPYQSSYCLES 405 (768)
Q Consensus 360 ~~~~-------------------~~----~~~g~~~~~---~p--------~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 405 (768)
..+. +. .+.|.++.. .| +.+..+.... ........|...
T Consensus 191 ~~g~~vdv~ApG~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g-------~~~~~~~~C~~~ 263 (441)
T 1y9z_A 191 QYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINA-------SATGALAECTVN 263 (441)
T ss_dssp CCCTTEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCC-------EEEEEEEEEEEE
T ss_pred cCCCceEEEeccCCeeccccCCCcccceeecccccccccccCcccccccCCcccccccccc-------ccccchhccccc
Confidence 1111 11 111221100 00 0000000000 001122457654
Q ss_pred --CCCCCCCCCeEEEEeecCC--CchhHHHHHHHHHHcCceEEEEEcCCCCC---------CCccceeeEEEechhhHHH
Q 004205 406 --SLNSTKARGKVLVCRHAES--STESKLRKSMVVKEAGGVGMILVDEPGKD---------VAIPFVIPSAVVGKKTGNK 472 (768)
Q Consensus 406 --~~~~~~~~gkivl~~~~~~--g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~---------~~~~~~~p~~~i~~~~g~~ 472 (768)
.++..+++|||++|+|+.. ..+.+.+|..+++++|+.|+|++|+.... ......+|.+.++..+|+.
T Consensus 264 ~~~~~~~~~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~ 343 (441)
T 1y9z_A 264 GTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLA 343 (441)
T ss_dssp TTEEECCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHH
T ss_pred cccccCCCccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHH
Confidence 4577899999999996421 12377899999999999999999886542 1234679999999999999
Q ss_pred HHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCCCCcceEEeccccchh
Q 004205 473 ILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMAC 552 (768)
Q Consensus 473 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAa 552 (768)
|++|+.+. + .+ ++.. .+.|..+|||||||
T Consensus 344 l~~~~~~~----~-----------------------------------t~--------~~~~----~~~y~~~sGTSmAa 372 (441)
T 1y9z_A 344 LKAKLGQS----T-----------------------------------TV--------SNQG----NQDYEYYNGTSMAT 372 (441)
T ss_dssp HHTTTTSE----E-----------------------------------EE--------EEEE----EESEEEECSHHHHH
T ss_pred HHHHhcCC----c-----------------------------------cc--------cccc----CCCceeecccccCC
Confidence 99876321 0 11 1111 14699999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcccccccCccccCCCCeeecCCCcchhh
Q 004205 553 PHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLSPGLIYDAQPIDYTV 632 (768)
Q Consensus 553 P~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l~~~~~~~~y~~ 632 (768)
|||||++|||+|+||+|+|++||++||+||++++..+ ++.+||+|+||+.+|+ ||+.
T Consensus 373 P~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g------------~~~~~G~G~vn~~~A~-----------~~~~ 429 (441)
T 1y9z_A 373 PHVSGVATLVWSYHPECSASQVRAALNATADDLSVAG------------RDNQTGYGMINAVAAK-----------AYLD 429 (441)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSS------------CBTTTBTCBCCHHHHH-----------HHHH
T ss_pred cccchHHHHHHHHCCCCCHHHHHHHHHhhchhhccCC------------CcccccccccCHHHHH-----------HHHH
Confidence 9999999999999999999999999999999764332 2457999999999996 6899
Q ss_pred hhhccCCC
Q 004205 633 FLCSIGYD 640 (768)
Q Consensus 633 ~~~~~g~~ 640 (768)
|||++++.
T Consensus 430 ~lc~~~~~ 437 (441)
T 1y9z_A 430 ESCTGPTD 437 (441)
T ss_dssp HCTTCC--
T ss_pred hhhcCCCC
Confidence 99998764
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-52 Score=440.78 Aligned_cols=267 Identities=27% Similarity=0.349 Sum_probs=219.1
Q ss_pred ccccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCC
Q 004205 124 DFMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSG 203 (768)
Q Consensus 124 ~~~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~ 203 (768)
..|++..+++..+|+.+..| +||+|||||||||++||+|.+ +++..++|.++
T Consensus 11 ~~w~l~~i~~~~aw~~~~g~-~gv~VaViDtGvd~~hp~l~~---------------------------~~~~~~~~~~~ 62 (280)
T 1dbi_A 11 YQYGPQNTYTDYAWDVTKGS-SGQEIAVIDTGVDYTHPDLDG---------------------------KVIKGYDFVDN 62 (280)
T ss_dssp HCCTTGGGTHHHHTTTCCCC-TTCEEEEEESCCCTTSTTTTT---------------------------TEEEEEETTTT
T ss_pred CCCChhhcCcHHHHhhcCCC-CCCEEEEEeCCcCCCChhhcc---------------------------CcccceeccCC
Confidence 34677778888999998766 899999999999999999963 24445555443
Q ss_pred ccccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHH
Q 004205 204 YEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDD 282 (768)
Q Consensus 204 ~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ 282 (768)
. .++.|..||||||||||+|...++. .+.||||+|+|+.+|+++..+ +..+++++||+|
T Consensus 63 ~------------~~~~d~~gHGT~vAgiia~~~~~~~--------g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~ 122 (280)
T 1dbi_A 63 D------------YDPMDLNNHGTHVAGIAAAETNNAT--------GIAGMAPNTRILAVRALDRNGSGTLSDIADAIIY 122 (280)
T ss_dssp B------------SCCCCSSSHHHHHHHHHHCCCSSSS--------SCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHH
T ss_pred C------------CCCCCCCCcHHHHHHHHhCcCCCCC--------cceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHH
Confidence 1 2456889999999999999764332 248999999999999998766 778899999999
Q ss_pred HHHcCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeEEe
Q 004205 283 AIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVL 361 (768)
Q Consensus 283 a~~~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~~~ 361 (768)
|+++|++|||||||... ....+..+++++.++|++||+||||+|. ....|+..+++|+|||++.
T Consensus 123 a~~~g~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~---------- 187 (280)
T 1dbi_A 123 AADSGAEVINLSLGCDC-----HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ---------- 187 (280)
T ss_dssp HHHTTCSEEEECCSSCC-----CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT----------
T ss_pred HHHCCCCEEEeCCCCCC-----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCC----------
Confidence 99999999999999874 3467788888999999999999999998 6677888999999997531
Q ss_pred CCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCc
Q 004205 362 GDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGG 441 (768)
Q Consensus 362 ~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga 441 (768)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T 1dbi_A 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCc
Q 004205 442 VGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPD 521 (768)
Q Consensus 442 ~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPD 521 (768)
.+.++.||++||.. |
T Consensus 188 ---------------------------------------------------------~~~~~~~S~~G~~~--------d 202 (280)
T 1dbi_A 188 ---------------------------------------------------------YDRLASFSNYGTWV--------D 202 (280)
T ss_dssp ---------------------------------------------------------TSCBCTTBCCSTTC--------C
T ss_pred ---------------------------------------------------------CCCcCCCCCCCCCc--------e
Confidence 25678999999865 9
Q ss_pred eeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCC
Q 004205 522 VTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRG 601 (768)
Q Consensus 522 I~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~ 601 (768)
|+|||++|+++++. +.|..++|||||||||||++|||++ |.+++.|||++|++||+++..
T Consensus 203 v~ApG~~i~s~~~~----~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~-------------- 262 (280)
T 1dbi_A 203 VVAPGVDIVSTITG----NRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISG-------------- 262 (280)
T ss_dssp EEEECSSEEEEETT----TEEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTT--------------
T ss_pred EEEecCCeEeecCC----CCEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCC--------------
Confidence 99999999999874 5699999999999999999999987 899999999999999997531
Q ss_pred CCCcccccccCccccCC
Q 004205 602 NAFDYGSGFLNPRKVLS 618 (768)
Q Consensus 602 ~~~~~G~G~vn~~~Al~ 618 (768)
....||+|+||+.+|++
T Consensus 263 ~~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 263 TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp BTTTBSSEECCHHHHHT
T ss_pred CCCcccCCEECHHHHhc
Confidence 12479999999999985
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-52 Score=439.48 Aligned_cols=263 Identities=32% Similarity=0.464 Sum_probs=224.5
Q ss_pred cccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCc
Q 004205 125 FMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGY 204 (768)
Q Consensus 125 ~~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~ 204 (768)
.|+++.++++.+|..+++| +||+|+|||||| .+||+|+ +...+.|..+.
T Consensus 5 ~W~l~~i~~~~a~~~g~~G-~gv~VaViDtGi-~~h~~l~-----------------------------~~~~~~~~~~~ 53 (269)
T 1gci_A 5 PWGISRVQAPAAHNRGLTG-SGVKVAVLDTGI-STHPDLN-----------------------------IRGGASFVPGE 53 (269)
T ss_dssp CHHHHHTTHHHHHHTTCSC-TTCEEEEEESCC-CCCTTCC-----------------------------EEEEEECSTTC
T ss_pred CcChhhcCcHHHHhcCCCC-CCCEEEEECCCC-CCCHhhc-----------------------------ccCCcccCCCC
Confidence 4677778888999999999 999999999999 8999994 23334443320
Q ss_pred cccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHH
Q 004205 205 EAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDA 283 (768)
Q Consensus 205 ~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a 283 (768)
..+.|..||||||||||+|..+ + . .+.||||+|+|+.+|+++..+ +..+++++||+||
T Consensus 54 ------------~~~~d~~gHGT~vAgiia~~~~-~---~-----~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a 112 (269)
T 1gci_A 54 ------------PSTQDGNGHGTHVAGTIAALNN-S---I-----GVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWA 112 (269)
T ss_dssp ------------CSCSCSSSHHHHHHHHHHCCCS-S---S-----BCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHH
T ss_pred ------------CCCCCCCCChHHHHHHHhcCcC-C---C-----CcEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHH
Confidence 2356889999999999999631 1 2 248999999999999998765 6788999999999
Q ss_pred HHcCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeEEeC
Q 004205 284 IRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVLG 362 (768)
Q Consensus 284 ~~~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~~~~ 362 (768)
++++++|||||||... ....+..+++++.++|++||+||||+|. ....|+..+++|+|||++.
T Consensus 113 ~~~~~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~----------- 176 (269)
T 1gci_A 113 GNNGMHVANLSLGSPS-----PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ----------- 176 (269)
T ss_dssp HHTTCSEEEECCCBSS-----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT-----------
T ss_pred HHCCCeEEEeCCCCCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecC-----------
Confidence 9999999999999874 2457788888999999999999999998 7778888999999997531
Q ss_pred CCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCce
Q 004205 363 DGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGV 442 (768)
Q Consensus 363 ~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~ 442 (768)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T 1gci_A 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCce
Q 004205 443 GMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDV 522 (768)
Q Consensus 443 g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 522 (768)
.+.++.||++||.. ||
T Consensus 177 --------------------------------------------------------~~~~~~~S~~G~~~--------di 192 (269)
T 1gci_A 177 --------------------------------------------------------NNNRASFSQYGAGL--------DI 192 (269)
T ss_dssp --------------------------------------------------------TSCBCTTCCCSTTE--------EE
T ss_pred --------------------------------------------------------CCCCCCCCCCCCCc--------ce
Confidence 24578999999976 99
Q ss_pred eeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCC
Q 004205 523 TAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGN 602 (768)
Q Consensus 523 ~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~ 602 (768)
+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++.|||++|++||+++. +
T Consensus 193 ~APG~~i~s~~~~----~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g---------------~ 253 (269)
T 1gci_A 193 VAPGVNVQSTYPG----STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG---------------S 253 (269)
T ss_dssp EEECSSEEEEETT----TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS---------------C
T ss_pred EecCCCeEeecCC----CCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC---------------C
Confidence 9999999999874 56999999999999999999999999999999999999999999652 3
Q ss_pred CCcccccccCccccCC
Q 004205 603 AFDYGSGFLNPRKVLS 618 (768)
Q Consensus 603 ~~~~G~G~vn~~~Al~ 618 (768)
++.||+|+||+.+|++
T Consensus 254 ~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 254 TNLYGSGLVNAEAATR 269 (269)
T ss_dssp HHHHTTCBCCHHHHTC
T ss_pred CCCcccCccCHHHHcC
Confidence 5689999999999985
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-52 Score=441.42 Aligned_cols=264 Identities=31% Similarity=0.457 Sum_probs=223.0
Q ss_pred cccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCc
Q 004205 125 FMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGY 204 (768)
Q Consensus 125 ~~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~ 204 (768)
.|+++.++++.+|+.+++| +||+|+|||||||++||+|+ +...+.|..+.
T Consensus 5 ~w~l~~i~~~~~~~~g~~G-~gv~VaViDtGid~~h~~l~-----------------------------~~~g~~~~~~~ 54 (274)
T 1r0r_E 5 PYGIPLIKADKVQAQGFKG-ANVKVAVLDTGIQASHPDLN-----------------------------VVGGASFVAGE 54 (274)
T ss_dssp CTHHHHTTHHHHHHHTCSC-TTCEEEEEESCCCTTCTTCC-----------------------------EEEEEECSTTC
T ss_pred CCchhhcCCHHHHhcCCCC-CCCEEEEEcCCCCCCCHhHc-----------------------------CCCCccccCCC
Confidence 3677777888999999999 99999999999999999994 22334443320
Q ss_pred cccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHH
Q 004205 205 EAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDA 283 (768)
Q Consensus 205 ~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a 283 (768)
....|..||||||||||+|..+ + ..+.||||+|+|+.+|+++..+ +..+++++||+||
T Consensus 55 ------------~~~~d~~gHGT~vAgiia~~~~-~--------~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a 113 (274)
T 1r0r_E 55 ------------AYNTDGNGHGTHVAGTVAALDN-T--------TGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWA 113 (274)
T ss_dssp ------------CTTCCSSSHHHHHHHHHHCCSS-S--------SBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHH
T ss_pred ------------CCCCCCCCCHHHHHHHHHccCC-C--------CceEEECCCCEEEEEEEECCCCCccHHHHHHHHHHH
Confidence 2346789999999999999631 1 1248999999999999998766 6788999999999
Q ss_pred HHcCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-C----CCcccCCCceEEEcccCCCccceee
Q 004205 284 IRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-E----GSVTNLAPWMFTIAASSTDRDFTSE 358 (768)
Q Consensus 284 ~~~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~----~~~~~~~p~vitVgAs~~~~~~~~~ 358 (768)
++++++|||||||... ....+..+++++.++|++||+||||+|. . ...|+..+++|+|||++
T Consensus 114 ~~~~~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~-------- 180 (274)
T 1r0r_E 114 TTNGMDVINMSLGGAS-----GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVD-------- 180 (274)
T ss_dssp HHTTCSEEEECEEBSS-----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEEC--------
T ss_pred HHcCCCEEEeCCCCCC-----CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEec--------
Confidence 9999999999999874 2467788888999999999999999997 2 34577788999999743
Q ss_pred EEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHH
Q 004205 359 IVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKE 438 (768)
Q Consensus 359 ~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~ 438 (768)
T Consensus 181 -------------------------------------------------------------------------------- 180 (274)
T 1r0r_E 181 -------------------------------------------------------------------------------- 180 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcc
Q 004205 439 AGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEIL 518 (768)
Q Consensus 439 ~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~ 518 (768)
..+.++.||++||..
T Consensus 181 -----------------------------------------------------------~~~~~~~~S~~G~~~------ 195 (274)
T 1r0r_E 181 -----------------------------------------------------------SNSNRASFSSVGAEL------ 195 (274)
T ss_dssp -----------------------------------------------------------TTSCBCTTCCCSTTE------
T ss_pred -----------------------------------------------------------CCCCcCccCCCCCCc------
Confidence 124678899999865
Q ss_pred cCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCC
Q 004205 519 KPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKG 598 (768)
Q Consensus 519 KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~ 598 (768)
||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|+++|||++|++||+++.
T Consensus 196 --di~APG~~i~s~~~~----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g------------ 257 (274)
T 1r0r_E 196 --EVMAPGAGVYSTYPT----NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG------------ 257 (274)
T ss_dssp --EEEEECSSEEEEETT----TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS------------
T ss_pred --eEEeCCCCeEeecCC----CCEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC------------
Confidence 999999999999874 56999999999999999999999999999999999999999999642
Q ss_pred CCCCCCcccccccCccccCC
Q 004205 599 RRGNAFDYGSGFLNPRKVLS 618 (768)
Q Consensus 599 ~~~~~~~~G~G~vn~~~Al~ 618 (768)
++..||+|++|+.+|++
T Consensus 258 ---~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 258 ---SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp ---CHHHHTTCBCCHHHHTC
T ss_pred ---CCCCcccCccCHHHHhC
Confidence 35689999999999985
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-52 Score=439.05 Aligned_cols=266 Identities=30% Similarity=0.442 Sum_probs=223.8
Q ss_pred cccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCc
Q 004205 125 FMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGY 204 (768)
Q Consensus 125 ~~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~ 204 (768)
.|+++.+++..+|..+++| +||+|||||||||++||+|+ +...+.|..+.
T Consensus 5 ~w~l~~i~~~~~~~~g~~G-~gv~VaViDtGid~~h~~l~-----------------------------~~~g~~~~~~~ 54 (281)
T 1to2_E 5 PYGVSQIKAPALHSQGYTG-SNVKVAVIDSGIDSSHPDLK-----------------------------VAGGASMVPSE 54 (281)
T ss_dssp CHHHHHTTHHHHHHHTCSC-TTCEEEEEESCCCTTCTTCC-----------------------------EEEEEECCTTC
T ss_pred CcchhhcChHHHHhcCCCC-CCCEEEEEcCCCCCCCHHHc-----------------------------CcCCccccCCC
Confidence 4677778888999999999 99999999999999999994 22333343220
Q ss_pred cccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHH
Q 004205 205 EAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDA 283 (768)
Q Consensus 205 ~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a 283 (768)
.....|..||||||||||+|..+ + ..+.||||+|+|+.+|+++..+ +..+++++||+||
T Consensus 55 -----------~~~~~d~~gHGT~vAgiia~~~~-~--------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a 114 (281)
T 1to2_E 55 -----------TNPFQDNNSHGTHVAGTVAALNN-S--------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWA 114 (281)
T ss_dssp -----------CCTTCCSSSHHHHHHHHHHCCSS-S--------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHH
T ss_pred -----------CCCCCCCCCcHHHHHHHHhccCC-C--------CcceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHH
Confidence 01235789999999999999641 1 1248999999999999998766 6788999999999
Q ss_pred HHcCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-C----CCcccCCCceEEEcccCCCccceee
Q 004205 284 IRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-E----GSVTNLAPWMFTIAASSTDRDFTSE 358 (768)
Q Consensus 284 ~~~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~----~~~~~~~p~vitVgAs~~~~~~~~~ 358 (768)
++++++|||||||... ....+..+++++.++|++||+||||+|. . ...|+..+++|+|||++
T Consensus 115 ~~~~~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~-------- 181 (281)
T 1to2_E 115 IANNMDVINMSLGGPS-----GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVD-------- 181 (281)
T ss_dssp HHTTCSEEEECEEBSC-----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEEC--------
T ss_pred HHCCCcEEEECCcCCC-----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEec--------
Confidence 9999999999999874 2467888888999999999999999987 2 34577788999999743
Q ss_pred EEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHH
Q 004205 359 IVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKE 438 (768)
Q Consensus 359 ~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~ 438 (768)
T Consensus 182 -------------------------------------------------------------------------------- 181 (281)
T 1to2_E 182 -------------------------------------------------------------------------------- 181 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcc
Q 004205 439 AGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEIL 518 (768)
Q Consensus 439 ~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~ 518 (768)
..+.++.||++||..
T Consensus 182 -----------------------------------------------------------~~~~~~~fS~~G~~~------ 196 (281)
T 1to2_E 182 -----------------------------------------------------------SSNQRASFSSVGPEL------ 196 (281)
T ss_dssp -----------------------------------------------------------TTSCBCTTCCCSTTC------
T ss_pred -----------------------------------------------------------CCCCcCCcCCCCCCc------
Confidence 125678999999965
Q ss_pred cCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCC
Q 004205 519 KPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKG 598 (768)
Q Consensus 519 KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~ 598 (768)
||+|||++|+++++. +.|..++|||||||+|||++|||+|++|+|+++|||++|++||+++.
T Consensus 197 --di~APG~~i~s~~~~----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g------------ 258 (281)
T 1to2_E 197 --DVMAPGVSIQSTLPG----NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG------------ 258 (281)
T ss_dssp --CEEEECSSEEEEETT----TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS------------
T ss_pred --eEEecCCCeEeecCC----CCEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC------------
Confidence 999999999999874 56999999999999999999999999999999999999999999642
Q ss_pred CCCCCCcccccccCccccCCC
Q 004205 599 RRGNAFDYGSGFLNPRKVLSP 619 (768)
Q Consensus 599 ~~~~~~~~G~G~vn~~~Al~~ 619 (768)
+++.||||+||+.+|+++
T Consensus 259 ---~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 259 ---DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp ---CHHHHTTCBCCHHHHTSS
T ss_pred ---CCCCcccceecHHHHhhh
Confidence 356899999999999985
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=435.80 Aligned_cols=266 Identities=28% Similarity=0.399 Sum_probs=224.4
Q ss_pred ccccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCC
Q 004205 124 DFMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSG 203 (768)
Q Consensus 124 ~~~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~ 203 (768)
..|+++.+++..+|+.. +| +||+|||||||||++||+|.+ ++...++|.++
T Consensus 11 ~~w~l~~i~~~~aw~~~-~G-~gv~VaViDtGvd~~h~~l~~---------------------------~~~~~~~~~~~ 61 (279)
T 1thm_A 11 RQYGPQKIQAPQAWDIA-EG-SGAKIAIVDTGVQSNHPDLAG---------------------------KVVGGWDFVDN 61 (279)
T ss_dssp HCCHHHHTTHHHHHTTC-CC-TTCEEEEEESCCCTTCTTTTT---------------------------TEEEEEETTTT
T ss_pred cccChhhCChHHHHhcC-CC-CCCEEEEEccCCCCCCcchhc---------------------------CccccccccCC
Confidence 34677778888999987 68 999999999999999999963 34445555443
Q ss_pred ccccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHH
Q 004205 204 YEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDD 282 (768)
Q Consensus 204 ~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ 282 (768)
. ..+.|..||||||||||+|...++. .+.||||+|+|+.+|+++..+ ++.+++++||+|
T Consensus 62 ~------------~~~~d~~gHGT~vAgiia~~~~n~~--------g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~ 121 (279)
T 1thm_A 62 D------------STPQNGNGHGTHCAGIAAAVTNNST--------GIAGTAPKASILAVRVLDNSGSGTWTAVANGITY 121 (279)
T ss_dssp B------------SCCCCSSSHHHHHHHHHHCCCSSSS--------SCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHH
T ss_pred C------------CCCCCCCCcHHHHHHHHhCccCCCC--------ccEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHH
Confidence 1 2456889999999999999764332 248999999999999998766 778899999999
Q ss_pred HHHcCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeEEe
Q 004205 283 AIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVL 361 (768)
Q Consensus 283 a~~~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~~~ 361 (768)
|+++|++|||||||... ..+.+..+++++.++|++||+||||+|. ....|+..+++|+|||++.
T Consensus 122 a~~~g~~Vin~S~G~~~-----~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~---------- 186 (279)
T 1thm_A 122 AADQGAKVISLSLGGTV-----GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ---------- 186 (279)
T ss_dssp HHHTTCSEEEECCCBSS-----CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT----------
T ss_pred HHHCCCCEEEEecCCCC-----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCC----------
Confidence 99999999999999874 3467788888999999999999999998 6677888899999997531
Q ss_pred CCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCc
Q 004205 362 GDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGG 441 (768)
Q Consensus 362 ~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga 441 (768)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 1thm_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCc
Q 004205 442 VGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPD 521 (768)
Q Consensus 442 ~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPD 521 (768)
.+.++.||++||.. |
T Consensus 187 ---------------------------------------------------------~~~~~~fS~~G~~~--------d 201 (279)
T 1thm_A 187 ---------------------------------------------------------NDNKSSFSTYGSWV--------D 201 (279)
T ss_dssp ---------------------------------------------------------TSCBCTTCCCCTTC--------C
T ss_pred ---------------------------------------------------------CCCcCCcCCCCCce--------E
Confidence 24678999999875 9
Q ss_pred eeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCC
Q 004205 522 VTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRG 601 (768)
Q Consensus 522 I~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~ 601 (768)
|+|||++|+++++. +.|..++|||||||||||++||| ++|.+++++||++|++||+++...
T Consensus 202 v~APG~~i~s~~~~----~~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~------------- 262 (279)
T 1thm_A 202 VAAPGSSIYSTYPT----STYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGT------------- 262 (279)
T ss_dssp EEEECSSEEEEETT----TEEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTB-------------
T ss_pred EEEcCCCeEEEeCC----CCEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCC-------------
Confidence 99999999999874 56999999999999999999999 579999999999999999975321
Q ss_pred CCCcccccccCccccCC
Q 004205 602 NAFDYGSGFLNPRKVLS 618 (768)
Q Consensus 602 ~~~~~G~G~vn~~~Al~ 618 (768)
...||+|+||+.+|++
T Consensus 263 -~~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 263 -GTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp -TTTBSSEECCHHHHHH
T ss_pred -CccccCCeeCHHHHhc
Confidence 1478999999999974
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-52 Score=446.99 Aligned_cols=273 Identities=28% Similarity=0.366 Sum_probs=224.2
Q ss_pred ccccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCC
Q 004205 124 DFMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSG 203 (768)
Q Consensus 124 ~~~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~ 203 (768)
..|+++.++++.+|+.+++| +||+|||||||||++||+|.+ ++.+.++|..+
T Consensus 21 ~~w~l~~i~~~~aw~~~~~G-~gv~VaViDtGid~~Hp~l~~---------------------------~~~~~~~~~~~ 72 (327)
T 2x8j_A 21 VPMGVEIVEAPAVWRASAKG-AGQIIGVIDTGCQVDHPDLAE---------------------------RIIGGVNLTTD 72 (327)
T ss_dssp CCHHHHHTTHHHHHHHHGGG-TTCEEEEEESCCCTTCTTTGG---------------------------GEEEEEECSSG
T ss_pred cCcchhhcChHHHHhcCCCC-CCCEEEEEcCCCCCCChhHhh---------------------------cccCCccccCC
Confidence 34788878888999999999 999999999999999999952 35555666554
Q ss_pred ccccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHH
Q 004205 204 YEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDD 282 (768)
Q Consensus 204 ~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ 282 (768)
+... .....|..||||||||||+|..+ + ..+.||||+|+|+.+|+++..+ +..+++++||+|
T Consensus 73 ~~~~--------~~~~~d~~gHGT~VAgiia~~~~-~--------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~ 135 (327)
T 2x8j_A 73 YGGD--------ETNFSDNNGHGTHVAGTVAAAET-G--------SGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRY 135 (327)
T ss_dssp GGGC--------TTCCCCSSSHHHHHHHHHHCCCC-S--------SBCCCSSTTCEEEEEECSCTTSEECHHHHHHHHHH
T ss_pred CCCC--------CCCCCCCCCchHHHHHHHhccCC-C--------CCcEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHH
Confidence 3211 12356889999999999999742 1 1248999999999999998766 778899999999
Q ss_pred HHH------cCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-C-----CCcccCCCceEEEcccC
Q 004205 283 AIR------DGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-E-----GSVTNLAPWMFTIAASS 350 (768)
Q Consensus 283 a~~------~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~-----~~~~~~~p~vitVgAs~ 350 (768)
|++ .+++|||||||... ....+..+++++.++|++||+||||+|. . ...|+..+++|+|||++
T Consensus 136 a~~~~~~~~~~~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~ 210 (327)
T 2x8j_A 136 AVDWRGPKGEQMRIITMSLGGPT-----DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVD 210 (327)
T ss_dssp HHHCCCTTSCCCSEEEECEEBSC-----CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEEC
T ss_pred HHhhcccccCCceEEEECCCcCC-----CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEEC
Confidence 999 89999999999874 2467788888999999999999999997 2 35677889999999753
Q ss_pred CCccceeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHH
Q 004205 351 TDRDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKL 430 (768)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~ 430 (768)
.
T Consensus 211 ~------------------------------------------------------------------------------- 211 (327)
T 2x8j_A 211 F------------------------------------------------------------------------------- 211 (327)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCC
Q 004205 431 RKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGP 510 (768)
Q Consensus 431 ~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp 510 (768)
.+.++.||++||
T Consensus 212 --------------------------------------------------------------------~~~~~~fS~~G~ 223 (327)
T 2x8j_A 212 --------------------------------------------------------------------DLRLSDFTNTNE 223 (327)
T ss_dssp --------------------------------------------------------------------TCCBSCC---CC
T ss_pred --------------------------------------------------------------------CCCCCCccCCCC
Confidence 256789999998
Q ss_pred CCCCCCcccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHh-----CCCCCHHHHHHHHHhhcccc
Q 004205 511 NALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAV-----HPSWSPSAIKSAIMTTATAL 585 (768)
Q Consensus 511 ~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-----~p~lsp~~ik~~L~~TA~~~ 585 (768)
.. ||+|||++|+++++. +.|..++|||||||+|||++|||+|+ +|.+++.+||++|++||+++
T Consensus 224 ~~--------di~APG~~i~s~~~~----~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~ 291 (327)
T 2x8j_A 224 EI--------DIVAPGVGIKSTYLD----SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPI 291 (327)
T ss_dssp CC--------SEEEECSSEEEECST----TCEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECC
T ss_pred Cc--------eEecCcCceEeecCC----CCEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 65 999999999999874 46999999999999999999999999 99999999999999999964
Q ss_pred cCCCCCccCCCCCCCCCCCcccccccCccccCCC
Q 004205 586 DKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLSP 619 (768)
Q Consensus 586 ~~~g~p~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 619 (768)
. .++..+|+|++|+.+|++.
T Consensus 292 g--------------~~~~~~G~G~vd~~~A~~~ 311 (327)
T 2x8j_A 292 G--------------FTAQAEGNGFLTLDLVERI 311 (327)
T ss_dssp S--------------SCHHHHTTCEECTTHHHHH
T ss_pred C--------------CCCCceeeeEECHHHHHHh
Confidence 2 2456899999999999973
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-50 Score=434.88 Aligned_cols=288 Identities=30% Similarity=0.396 Sum_probs=230.5
Q ss_pred cccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCc
Q 004205 125 FMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGY 204 (768)
Q Consensus 125 ~~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~ 204 (768)
.|+++.++++.+|..+.+| +||+|||||||||++||+|.+ ++...++|..+.
T Consensus 7 ~W~l~~i~~~~~w~~~~~G-~gv~VaViDtGvd~~H~~l~~---------------------------~~~~~~~~~~~~ 58 (310)
T 2ixt_A 7 PWGIKAIYNNDTLTSTTGG-SGINIAVLDTGVNTSHPDLVN---------------------------NVEQCKDFTGAT 58 (310)
T ss_dssp CHHHHHHHTCTTCCCCCCC-TTCEEEEEESCCCTTCTTTTT---------------------------TEEEEEESSSSS
T ss_pred CCchhhcCchhhhhccCCC-CCcEEEEEecCCCCCCHHHhh---------------------------cccccccccCCC
Confidence 4677777888999999999 999999999999999999963 234445554431
Q ss_pred cccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHH
Q 004205 205 EAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDA 283 (768)
Q Consensus 205 ~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a 283 (768)
. .......|..||||||||||+|....+ ...+.||||+|+|+.+|++.+.+ +..+++++||+||
T Consensus 59 ~--------~~~~~~~d~~gHGT~vAgiia~~~~~n-------~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a 123 (310)
T 2ixt_A 59 T--------PINNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHA 123 (310)
T ss_dssp S--------CEETCCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHH
T ss_pred C--------CCCCCCCCCCCCHHHHHHHHhccCCCC-------CCceEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHH
Confidence 1 011235688999999999999875221 12348999999999999998766 6788999999999
Q ss_pred HHcCC-----cEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC---CCCcccCCCceEEEcccCCCccc
Q 004205 284 IRDGV-----HILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN---EGSVTNLAPWMFTIAASSTDRDF 355 (768)
Q Consensus 284 ~~~g~-----dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~---~~~~~~~~p~vitVgAs~~~~~~ 355 (768)
+++++ +|||||||... ....+..+++++.++|++||+||||+|. ....|+..+++|+|||++...
T Consensus 124 ~~~~~~~~~~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~-- 196 (310)
T 2ixt_A 124 ADQATATGTKTIISMSLGSSA-----NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ-- 196 (310)
T ss_dssp HHHHHHHTCCEEEEECCCBSS-----CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE--
T ss_pred HHhhhccCCCeEEEEcCCCCC-----CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc--
Confidence 99987 99999999874 2467788888999999999999999997 345678889999999853100
Q ss_pred eeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHH
Q 004205 356 TSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMV 435 (768)
Q Consensus 356 ~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~ 435 (768)
T Consensus 197 -------------------------------------------------------------------------------- 196 (310)
T 2ixt_A 197 -------------------------------------------------------------------------------- 196 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCC--ccccccCCCCCCC
Q 004205 436 VKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAP--RVAAFSSKGPNAL 513 (768)
Q Consensus 436 ~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~a~fSs~Gp~~~ 513 (768)
..+ .++.||++||...
T Consensus 197 --------------------------------------------------------------~~g~~~~~~~S~~G~~~~ 214 (310)
T 2ixt_A 197 --------------------------------------------------------------QNGTYRVADYSSRGYIST 214 (310)
T ss_dssp --------------------------------------------------------------ETTEEEECTTSCCCCTTT
T ss_pred --------------------------------------------------------------cCCCeeeccccCCCCccC
Confidence 012 5788999999542
Q ss_pred C----CCcccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCC
Q 004205 514 N----PEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNH 589 (768)
Q Consensus 514 ~----~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g 589 (768)
. ..+.||||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++++||++|++||++++..+
T Consensus 215 ~g~~~~~~~~~di~ApG~~i~s~~~~----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~ 290 (310)
T 2ixt_A 215 AGDYVIQEGDIEISAPGSSVYSTWYN----GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKG 290 (310)
T ss_dssp TTSSSCCTTCCCEEEECSSEEEECTT----SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCB
T ss_pred CccccccCCCeeEECCCCCEeeecCC----CCEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCC
Confidence 1 123599999999999999874 46999999999999999999999999999999999999999999875332
Q ss_pred CCccCCCCCCCCCCCcccccccCc
Q 004205 590 KPITVDPKGRRGNAFDYGSGFLNP 613 (768)
Q Consensus 590 ~p~~~~~~~~~~~~~~~G~G~vn~ 613 (768)
. ......++..+|||++|+
T Consensus 291 ~-----~~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 291 G-----YGAAIGDDYASGFGFARV 309 (310)
T ss_dssp S-----TTCCSSSBTTTBTCBCCC
T ss_pred C-----cccccCCccccccceeec
Confidence 1 123456778999999986
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-53 Score=463.11 Aligned_cols=304 Identities=20% Similarity=0.220 Sum_probs=196.9
Q ss_pred CcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccc-ccc
Q 004205 135 EIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDI-VET 213 (768)
Q Consensus 135 ~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~-~~~ 213 (768)
++|+++..| ++|+|||||||||++||+|++....+....|+..++........ .+..+.. . ...+....... ...
T Consensus 22 ~~w~~~~g~-~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-~~~~~~~~~~~~~~~ 97 (357)
T 4h6x_A 22 DLHNQTLGD-PQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYA-AFQSIRD-Q-GLKGKEKEEALEAVI 97 (357)
T ss_dssp HHHHHCSCC-TTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHH-HHHHHHH-H-TCCSHHHHHHHHHHC
T ss_pred HHHHhcCCC-CCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCccccc-ccccccC-c-ccccccccccccccc
Confidence 799998877 99999999999999999998776666666676655432110000 0000000 0 00000000000 000
Q ss_pred ccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC------CCHHHHHHHHHHHHHcC
Q 004205 214 VSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG------CYDVDLLAAFDDAIRDG 287 (768)
Q Consensus 214 ~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g------~~~~~i~~ai~~a~~~g 287 (768)
.+..++.|.+||||||||||||+..+ .+.||||+|+|+.+|++.... ....++++||+||++.|
T Consensus 98 ~~~~~~~D~~gHGThVAGiiag~~~~----------g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~~g 167 (357)
T 4h6x_A 98 PDTKDRIVLNDHACHVTSTIVGQEHS----------PVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELG 167 (357)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHCCTTS----------SCCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHHTT
T ss_pred CCCCCCcCCCCcHHHHHHHHhccCCC----------CceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHHcC
Confidence 01123456789999999999997522 348999999999999975322 33467899999999999
Q ss_pred CcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeEEeCCCce
Q 004205 288 VHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGAN 366 (768)
Q Consensus 288 ~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~ 366 (768)
++|||||||... ......+.+..++.++.++|++||+||||+|. ....|+..+++|+|||++
T Consensus 168 ~~Vin~S~G~~~-~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~---------------- 230 (357)
T 4h6x_A 168 ANIIHCAFCRPT-QTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAK---------------- 230 (357)
T ss_dssp CSEEEEC------------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEEC----------------
T ss_pred CCEEeeccccCC-ccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEec----------------
Confidence 999999999875 22345567888889999999999999999998 777888899999999853
Q ss_pred EecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEE
Q 004205 367 FTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMIL 446 (768)
Q Consensus 367 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~ 446 (768)
T Consensus 231 -------------------------------------------------------------------------------- 230 (357)
T 4h6x_A 231 -------------------------------------------------------------------------------- 230 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCC
Q 004205 447 VDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPG 526 (768)
Q Consensus 447 ~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG 526 (768)
..+.++.|||||+.. .||||+|||
T Consensus 231 ---------------------------------------------------~~~~~~~fSn~G~~~-----~~~di~APG 254 (357)
T 4h6x_A 231 ---------------------------------------------------VDGTPCHFSNWGGNN-----TKEGILAPG 254 (357)
T ss_dssp ---------------------------------------------------TTSSBCTTCC---CT-----TTTEEEEEC
T ss_pred ---------------------------------------------------cCCcccccccCCCCC-----CccceeecC
Confidence 125678999999754 589999999
Q ss_pred ceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHH----hCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCC
Q 004205 527 LNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKA----VHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGN 602 (768)
Q Consensus 527 ~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~ 602 (768)
++|+|+++. ++.|..++|||||||||||++|||++ ++|.|+++|||++|++||++++. .....
T Consensus 255 ~~i~s~~~~---~~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~----------~~~~~ 321 (357)
T 4h6x_A 255 EEILGAQPC---TEEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDP----------EVVEE 321 (357)
T ss_dssp SSEEECCTT---CSCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC---------------------
T ss_pred CCeEeccCC---CCcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCC----------CCCCC
Confidence 999999874 24578899999999999999999995 46789999999999999997632 12334
Q ss_pred CCcccccccCccccCC
Q 004205 603 AFDYGSGFLNPRKVLS 618 (768)
Q Consensus 603 ~~~~G~G~vn~~~Al~ 618 (768)
+.+||+|+||+.+|++
T Consensus 322 ~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 322 PERCLRGFVNIPGAMK 337 (357)
T ss_dssp ---CTTCBCCHHHHHH
T ss_pred cccceeEEecHHHHHH
Confidence 5689999999999997
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-51 Score=439.20 Aligned_cols=273 Identities=26% Similarity=0.394 Sum_probs=224.8
Q ss_pred ccccccccCCCCcCCCCCCCCc--ceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEecc
Q 004205 124 DFMGLMGEESMEIPGFSTKNQV--NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYM 201 (768)
Q Consensus 124 ~~~g~~~~~~~~~~~~~~~Gg~--GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~ 201 (768)
..|+++.++++.+|+.+ +| + ||+|||||||||++||+|.+ ++...++|.
T Consensus 8 ~~W~l~~i~~~~aw~~~-~G-~~~gv~VaViDtGid~~Hp~l~~---------------------------~~~~~~~~~ 58 (320)
T 2z30_A 8 IPWGIERVKAPSVWSIT-DG-SVSVIQVAVLDTGVDYDHPDLAA---------------------------NIAWCVSTL 58 (320)
T ss_dssp CCHHHHHTTCGGGTTTC-CS-CCTTCEEEEEESCBCTTCTTTGG---------------------------GEEEEEECG
T ss_pred CCCChhhcChHHHHHhc-CC-CcCCeEEEEECCCCCCCChhHhc---------------------------ccccCcccc
Confidence 34678888899999998 88 9 99999999999999999963 233444444
Q ss_pred CCccccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHH
Q 004205 202 SGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAF 280 (768)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai 280 (768)
.+.... +.....|..||||||||||+|.. ++ . .+.||||+|+|+.+|+++..+ +..+++++||
T Consensus 59 ~~~~~~-------~~~~~~d~~gHGT~vAgiia~~~-n~---~-----g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai 122 (320)
T 2z30_A 59 RGKVST-------KLRDCADQNGHGTHVIGTIAALN-ND---I-----GVVGVAPGVQIYSVRVLDARGSGSYSDIAIGI 122 (320)
T ss_dssp GGCCBC-------CHHHHBCSSSHHHHHHHHHHCCS-SS---B-----SCCCSSTTCEEEEEECSCTTSEEEHHHHHHHH
T ss_pred CCccCC-------CCCCCCCCCCCHHHHHHHHHccc-CC---C-----ceEeeCCCCEEEEEEeeCCCCCccHHHHHHHH
Confidence 321100 00123578899999999999963 11 2 248999999999999998766 6778999999
Q ss_pred HHHHHc--------------------CCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccC
Q 004205 281 DDAIRD--------------------GVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNL 339 (768)
Q Consensus 281 ~~a~~~--------------------g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~ 339 (768)
+||+++ +++|||||||... ....+..+++++.++|++||+||||+|. ....|+.
T Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~-----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~ 197 (320)
T 2z30_A 123 EQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA-----DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAA 197 (320)
T ss_dssp HHHHHTTTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSC-----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTT
T ss_pred HHHHhCcccccccccccccccccccCCceEEEecCCCCC-----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCccc
Confidence 999987 9999999999874 2456777888899999999999999998 7778889
Q ss_pred CCceEEEcccCCCccceeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEE
Q 004205 340 APWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVC 419 (768)
Q Consensus 340 ~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~ 419 (768)
.+++|+|||++.
T Consensus 198 ~~~vi~Vga~~~-------------------------------------------------------------------- 209 (320)
T 2z30_A 198 YPEVIAVGAIDS-------------------------------------------------------------------- 209 (320)
T ss_dssp STTEEEEEEECT--------------------------------------------------------------------
T ss_pred CCCeEEEEeeCC--------------------------------------------------------------------
Confidence 999999998531
Q ss_pred eecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCC
Q 004205 420 RHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPA 499 (768)
Q Consensus 420 ~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~ 499 (768)
.
T Consensus 210 -------------------------------------------------------------------------------~ 210 (320)
T 2z30_A 210 -------------------------------------------------------------------------------N 210 (320)
T ss_dssp -------------------------------------------------------------------------------T
T ss_pred -------------------------------------------------------------------------------C
Confidence 2
Q ss_pred CccccccCCCCCCCCCCcccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhC-------------
Q 004205 500 PRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVH------------- 566 (768)
Q Consensus 500 ~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------------- 566 (768)
+.++.||++|| +|+|||++|+++++. +.|..++|||||||||||++|||+|++
T Consensus 211 ~~~~~~S~~g~----------~v~APG~~i~s~~~~----~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~ 276 (320)
T 2z30_A 211 DNIASFSNRQP----------EVSAPGVDILSTYPD----DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTF 276 (320)
T ss_dssp SCBCTTSCSSC----------SEEEECSSEEEEETT----TEEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCT
T ss_pred CCcCcccCCCC----------CEEeCCCCeEEeccC----CCeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccC
Confidence 56789999997 789999999999874 569999999999999999999999998
Q ss_pred CCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcccccccCccccCCC
Q 004205 567 PSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLSP 619 (768)
Q Consensus 567 p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 619 (768)
|.|++.+||++|++||+++.. +.++..||+|+||+.+|++.
T Consensus 277 p~lt~~~v~~~L~~ta~~~~~------------~g~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 277 DDISKNTVRGILHITADDLGP------------TGWDADYGYGVVRAALAVQA 317 (320)
T ss_dssp TCCSTTSHHHHHHHHSBCCSS------------SSSBTTTBTCBCCHHHHHHH
T ss_pred CCCCHHHHHHHHHhhCccCCC------------CCCCCCcCCceeCHHHHHHH
Confidence 999999999999999997532 22456899999999999863
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-51 Score=432.84 Aligned_cols=264 Identities=24% Similarity=0.274 Sum_probs=209.4
Q ss_pred CCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCC
Q 004205 141 TKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPR 220 (768)
Q Consensus 141 ~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 220 (768)
.+|.+||+|||||||||++||+|.+. .+.+..++..+ ......
T Consensus 4 l~G~~gV~VaViDtGid~~Hpdl~g~--------------------------~~~~~~~~~~~-----------~~~~d~ 46 (282)
T 3zxy_A 4 LKGDHNIRVAILDGPVDIAHPCFQGA--------------------------DLTVLPTLAPT-----------AARSDG 46 (282)
T ss_dssp CCCCTTSEEEEEESCCCTTSGGGTTC--------------------------EEEECCCSSCC-----------CCCTTC
T ss_pred CcCCCCCEEEEEcCCCCCCChhHCCC--------------------------eeecCcCCCCC-----------CCCCCC
Confidence 45647999999999999999999642 12221111111 012233
Q ss_pred CCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC--CCHHHHHHHHHHHHHcCCcEEEeccCCC
Q 004205 221 DSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG--CYDVDLLAAFDDAIRDGVHILSLSLGPE 298 (768)
Q Consensus 221 D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 298 (768)
|.+||||||||||+|+..+ .+.||||+|+|+.+|++.+.+ .+..++++||+||++++++|||||||..
T Consensus 47 ~~~gHGT~VAGiiag~~~~----------~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~ 116 (282)
T 3zxy_A 47 FMSAHGTHVASIIFGQPET----------SVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGEL 116 (282)
T ss_dssp HHHHHHHHHHHHHHCCTTS----------SSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEE
T ss_pred CCCCcccceeehhhccCCc----------eeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCccc
Confidence 4678999999999987532 248999999999999986543 6778899999999999999999999976
Q ss_pred CCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeEEeCCCceEeccccccccc
Q 004205 299 APQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKM 377 (768)
Q Consensus 299 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~ 377 (768)
. ........+..++..+.++|+++|+||||+|. ....|+..+++|+|||++
T Consensus 117 ~-~~~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~--------------------------- 168 (282)
T 3zxy_A 117 T-DFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMD--------------------------- 168 (282)
T ss_dssp E-SSSCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEEC---------------------------
T ss_pred c-ccccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEc---------------------------
Confidence 4 22234567788888999999999999999998 777888899999999743
Q ss_pred ccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCcc
Q 004205 378 NASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIP 457 (768)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~ 457 (768)
T Consensus 169 -------------------------------------------------------------------------------- 168 (282)
T 3zxy_A 169 -------------------------------------------------------------------------------- 168 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCC
Q 004205 458 FVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAV 537 (768)
Q Consensus 458 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~ 537 (768)
..+.++.||+||+. ..||||+|||++|+++++.
T Consensus 169 ----------------------------------------~~~~~~~~S~~~~~-----~~~~di~ApG~~i~s~~~~-- 201 (282)
T 3zxy_A 169 ----------------------------------------DHGHPLDFSNWGST-----YEQQGILAPGEDILGAKPG-- 201 (282)
T ss_dssp ----------------------------------------TTSCBCSSSCCCHH-----HHHHEEEEECSSEEEECTT--
T ss_pred ----------------------------------------CCCccccccCCCCC-----ccccceeccCcceeeecCC--
Confidence 12567889999875 3689999999999999874
Q ss_pred CCcceEEeccccchhHHHHHHHHHHHHhC----CCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcccccccCc
Q 004205 538 GKMQFNILSGTSMACPHVTGIATLIKAVH----PSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNP 613 (768)
Q Consensus 538 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~----p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~vn~ 613 (768)
+.|..++|||||||||||++|||+|++ |.++|+|||++|++||++++. ..+.....+|+|+||+
T Consensus 202 --~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~----------~~~~~~~~~G~G~ln~ 269 (282)
T 3zxy_A 202 --GGTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDD----------DAPEQARRCLAGRLNV 269 (282)
T ss_dssp --SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC-----------------CGGGTTCBCCH
T ss_pred --CceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCC----------CCCCccCceeeeEeCH
Confidence 569999999999999999999999874 789999999999999996532 2234566899999999
Q ss_pred cccCC
Q 004205 614 RKVLS 618 (768)
Q Consensus 614 ~~Al~ 618 (768)
.+|++
T Consensus 270 ~~A~~ 274 (282)
T 3zxy_A 270 SGAFT 274 (282)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-50 Score=433.14 Aligned_cols=270 Identities=23% Similarity=0.283 Sum_probs=216.3
Q ss_pred CCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCcccccccccc
Q 004205 134 MEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVET 213 (768)
Q Consensus 134 ~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 213 (768)
+++|+....+ +||+|||||||||++||+|.+. .+.+..++..+.
T Consensus 11 ~~aW~~~~G~-~gV~VaViDtGid~~Hpdl~g~--------------------------~~~~~~~~~~~~--------- 54 (306)
T 4h6w_A 11 KKLWSETRGD-PKICVAVLDGIVDQNHPCFIGA--------------------------DLTRLPSLVSGE--------- 54 (306)
T ss_dssp HHHHHHCSCC-TTCEEEEESSCCCTTSGGGTTC--------------------------EEEECC---------------
T ss_pred HHHHhhhCCC-CCCEEEEEcCCCCCCChhHcCC--------------------------cccCCCcccCCC---------
Confidence 3799988766 9999999999999999999642 222322332221
Q ss_pred ccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC--CCHHHHHHHHHHHHHcCCcEE
Q 004205 214 VSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG--CYDVDLLAAFDDAIRDGVHIL 291 (768)
Q Consensus 214 ~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVI 291 (768)
.....|.+||||||||||+|+.. +.+.||||+|+|+.+|++.+.+ .....+++||+||++++++||
T Consensus 55 --~~~~~d~~gHGThVAGiiag~~~----------~~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi 122 (306)
T 4h6w_A 55 --ANANGSMSTHGTHVASIIFGQHD----------SPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANII 122 (306)
T ss_dssp ------CCCCHHHHHHHHHHHCCTT----------SSSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEE
T ss_pred --CCCCCCCCCchHHHHHHHHcccc----------CCcceeccccccceeeccccccccchHHHHHHHHHHhhcccceee
Confidence 12234678999999999998752 2348999999999999996543 677889999999999999999
Q ss_pred EeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeEEeCCCceEecc
Q 004205 292 SLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGE 370 (768)
Q Consensus 292 N~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~ 370 (768)
|+|||... ........+..+++.+.++|++||+||||+|. ....|+..+++|+|||++.
T Consensus 123 ~~s~g~~~-~~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~------------------- 182 (306)
T 4h6w_A 123 NVSAGQLT-DAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDD------------------- 182 (306)
T ss_dssp EECCCEEE-SSSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECT-------------------
T ss_pred eccccccc-cCCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecC-------------------
Confidence 99999754 22234567888888999999999999999998 7778888899999997531
Q ss_pred cccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCC
Q 004205 371 SLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEP 450 (768)
Q Consensus 371 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~ 450 (768)
T Consensus 183 -------------------------------------------------------------------------------- 182 (306)
T 4h6w_A 183 -------------------------------------------------------------------------------- 182 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEE
Q 004205 451 GKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNII 530 (768)
Q Consensus 451 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~ 530 (768)
.+.++.||+||+. ..||||+|||++|+
T Consensus 183 ------------------------------------------------~~~~~~~s~~g~~-----~~~~di~APG~~i~ 209 (306)
T 4h6w_A 183 ------------------------------------------------QGKPVDFSNWGDA-----YQKQGILAPGKDIL 209 (306)
T ss_dssp ------------------------------------------------TSCBCSSSCBCHH-----HHHHEEEEECSSEE
T ss_pred ------------------------------------------------CCCccccccccCC-----cCcceeecCCcCcc
Confidence 2457789999964 36899999999999
Q ss_pred EEecCCCCCcceEEeccccchhHHHHHHHHHHHHh----CCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcc
Q 004205 531 AAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAV----HPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606 (768)
Q Consensus 531 Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~ 606 (768)
++++. +.|..++|||||||||||++|||+++ +|.|+|+|||++|++||++++..+ ..+...|
T Consensus 210 s~~~~----~~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~----------~~~~~~~ 275 (306)
T 4h6w_A 210 GAKPN----GGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD----------TDDQSRC 275 (306)
T ss_dssp EECTT----SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT----------CSCGGGG
T ss_pred cccCC----CceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC----------CCCCCCc
Confidence 99874 56999999999999999999999864 699999999999999999764322 2234579
Q ss_pred cccccCccccCC
Q 004205 607 GSGFLNPRKVLS 618 (768)
Q Consensus 607 G~G~vn~~~Al~ 618 (768)
|+|+||+.+|++
T Consensus 276 G~G~ln~~~Av~ 287 (306)
T 4h6w_A 276 LMGKLNILDAIE 287 (306)
T ss_dssp TTCBCCHHHHHH
T ss_pred ceeecCHHHHHH
Confidence 999999999997
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-50 Score=438.87 Aligned_cols=279 Identities=20% Similarity=0.143 Sum_probs=223.1
Q ss_pred ccccccccCCCCcCCCCCCCCc--ceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEecc
Q 004205 124 DFMGLMGEESMEIPGFSTKNQV--NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYM 201 (768)
Q Consensus 124 ~~~g~~~~~~~~~~~~~~~Gg~--GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~ 201 (768)
..|+++.+++.++|+. .+| + ||+||||||||| +||+|.+ ++...++|.
T Consensus 23 ~~W~l~~i~~~~aw~~-~~G-~~~gv~VaViDsGid-~Hp~l~~---------------------------~~~~~~~~~ 72 (347)
T 2iy9_A 23 KPWYFDAIGLTETTMS-LTD-KNTPVVVSVVDSGVA-FIGGLSD---------------------------SEFAKFSFT 72 (347)
T ss_dssp CCHHHHHHTCCHHHHH-TSC-TTSCCEEEEEESCCC-CCGGGTT---------------------------CEEEEEECB
T ss_pred cCcchhhCChHHHHHH-hcC-CCCCCEEEEEcCCCc-CChhhhc---------------------------CcccCCccc
Confidence 3467777788899998 789 9 999999999999 9999963 234445554
Q ss_pred CCccccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHH
Q 004205 202 SGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFD 281 (768)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~ 281 (768)
++.. +.+...+.|..||||||||||+|+ .| +.||||+|+|+.+|++++.+.. ++++||+
T Consensus 73 ~~~~-------~~~~~~~~d~~gHGT~vAgiia~~-------~g-----~~GvAp~a~l~~~~v~~~~~~~--~~~~ai~ 131 (347)
T 2iy9_A 73 QDGS-------PFPVKKSEALYIHGTAMASLIASR-------YG-----IYGVYPHALISSRRVIPDGVQD--SWIRAIE 131 (347)
T ss_dssp TTCC-------SSCCSSSHHHHHHHHHHHHHHHCS-------SS-----SCCSSTTCEEEEEECCSSBCTT--HHHHHHH
T ss_pred CCCC-------CCCCCCCCCCCCcHHHHHHHHhcc-------cC-----CcccCCCCEEEEEEEecCCCHH--HHHHHHH
Confidence 3311 111124557889999999999997 12 3899999999999999765543 9999999
Q ss_pred HHHHc------CCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-C-------CCcccCCC------
Q 004205 282 DAIRD------GVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-E-------GSVTNLAP------ 341 (768)
Q Consensus 282 ~a~~~------g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~-------~~~~~~~p------ 341 (768)
||+++ |++|||||||... .......+..+++.+.++|++||+||||+|. . ...|+..+
T Consensus 132 ~a~~~~~~~~~~~~Vin~S~G~~~--~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~ 209 (347)
T 2iy9_A 132 SIMSNVFLAPGEEKIINISGGQKG--VASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVN 209 (347)
T ss_dssp HHHTCTTSCTTEEEEEEESSCBCC--C-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHH
T ss_pred HHHhhhhcccCCceEEEeccccCC--CCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccc
Confidence 99999 9999999999774 1245678888999999999999999999997 2 34567777
Q ss_pred ----ceEEEcccCC--CccceeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCe
Q 004205 342 ----WMFTIAASST--DRDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGK 415 (768)
Q Consensus 342 ----~vitVgAs~~--~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gk 415 (768)
++|+|||++. +...
T Consensus 210 ~~~~~vi~Vga~~~~~~g~~------------------------------------------------------------ 229 (347)
T 2iy9_A 210 KKQDPVIRVAALAQYRKGET------------------------------------------------------------ 229 (347)
T ss_dssp HHTCCEEEEEEECCCCTTSC------------------------------------------------------------
T ss_pred cccCCEEEEEEcccCCCCce------------------------------------------------------------
Confidence 8999998653 1100
Q ss_pred EEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecC
Q 004205 416 VLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLG 495 (768)
Q Consensus 416 ivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~ 495 (768)
T Consensus 230 -------------------------------------------------------------------------------- 229 (347)
T 2iy9_A 230 -------------------------------------------------------------------------------- 229 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHH
Q 004205 496 SEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIK 575 (768)
Q Consensus 496 ~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik 575 (768)
......++.||++||+ ||||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|+++|||
T Consensus 230 ~~~~~~~~~fS~~G~~-------~~di~APG~~i~s~~~~----~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~ 298 (347)
T 2iy9_A 230 PVLHGGGITGSRFGNN-------WVDIAAPGQNITFLRPD----AKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELK 298 (347)
T ss_dssp CCBCCCSSSCBCBCTT-------TCSEEEECSSEEEECTT----SCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHH
T ss_pred ecccCCCCCCCCCCCC-------CCEEEeCCCCeEeecCC----CCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 0011345799999994 56999999999999873 569999999999999999999999999999999999
Q ss_pred HHHHhhcccccCCCCCccCCCCCCCCCCCcccccccCccccCCC
Q 004205 576 SAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLSP 619 (768)
Q Consensus 576 ~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 619 (768)
++|++||+++... ....+|+|+||+.+|++.
T Consensus 299 ~~L~~tA~~~~~~-------------~~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 299 RTLLESADKYPSL-------------VDKVTEGRVLNAEKAISM 329 (347)
T ss_dssp HHHHHHSEECGGG-------------TTTSGGGEECCHHHHHHH
T ss_pred HHHHHhCccCCCC-------------CCccccCCEecHHHHHHH
Confidence 9999999976432 135899999999999984
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-50 Score=435.22 Aligned_cols=299 Identities=23% Similarity=0.333 Sum_probs=222.5
Q ss_pred cCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccc-cCCceeEEEEeccCCcccccc
Q 004205 131 EESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNAS-SCNRKVIGARYYMSGYEAEED 209 (768)
Q Consensus 131 ~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~-~~n~ki~g~~~~~~~~~~~~~ 209 (768)
+++..+|+.+++| +||+||||||||| +||+|.+.-.. .|+-........... ..........++ +.+..
T Consensus 19 i~~~~aw~~g~~G-~gV~VaViDtGi~-~hp~l~~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~--- 88 (340)
T 3lpc_A 19 VKADKVWDMGFTG-QNVVVAVVDTGIL-HHRDLNANVLP----GYDFISNSQISLDGDGRDADPFDEGDWF-DNWAC--- 88 (340)
T ss_dssp CCHHHHHHHTCSC-TTCEEEEEESCBC-CCTTTGGGBCC----CEECCCCHHHHCSSSSSBSCCBCCCCCB-CTTTT---
T ss_pred CCHHHHHHhcCCC-CCeEEEEEcCCCC-CChhhhccccc----CccccCCccccccCCCccCCcccccccc-ccccc---
Confidence 5677999999999 9999999999998 99999743211 111000000000000 000000000000 00000
Q ss_pred ccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHH----
Q 004205 210 IVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIR---- 285 (768)
Q Consensus 210 ~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~---- 285 (768)
...+.+.....|..||||||||||+|...++. .+.||||+|+|+.+|+++..++..+++++||+||++
T Consensus 89 ~~~~~~~~~~~d~~gHGT~vAgiia~~~~~~~--------g~~GvAp~a~l~~~~v~~~~~~~~~~~~~ai~~a~~~~~~ 160 (340)
T 3lpc_A 89 GGRPDPRKERSDSSWHGSHVAGTIAAVTNNRI--------GVAGVAYGAKVVPVRALGRCGGYDSDISDGLYWAAGGRIA 160 (340)
T ss_dssp SCTTCGGGSCBCCCCHHHHHHHHHHCCCSSSS--------SCCCTTTTSEEEEEECCBTTBCCHHHHHHHHHHHHTCCCT
T ss_pred cCCCCcccCCCCCCCCHHHHHHHHHccCCCCC--------cceeecCCCEEEEEEEecCCCCcHHHHHHHHHHHhccccc
Confidence 00112223457889999999999999765432 248999999999999998877888999999999998
Q ss_pred ------cCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC--CCCcccCCCceEEEcccCCCcccee
Q 004205 286 ------DGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN--EGSVTNLAPWMFTIAASSTDRDFTS 357 (768)
Q Consensus 286 ------~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~--~~~~~~~~p~vitVgAs~~~~~~~~ 357 (768)
.+++|||||||... .....+..+++++.++|++||+||||+|. ....|+..+++|+|||++.
T Consensus 161 ~~~~~~~~~~Vin~S~G~~~----~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------ 230 (340)
T 3lpc_A 161 GIPENRNPAKVINMSLGSDG----QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTS------ 230 (340)
T ss_dssp TSCCCSSCCSEEEECCCEES----CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECT------
T ss_pred ccccccCCCeEEEeCcCCCC----CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCC------
Confidence 88999999999864 23456777888899999999999999998 4456888899999997531
Q ss_pred eEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHH
Q 004205 358 EIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVK 437 (768)
Q Consensus 358 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~ 437 (768)
T Consensus 231 -------------------------------------------------------------------------------- 230 (340)
T 3lpc_A 231 -------------------------------------------------------------------------------- 230 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCc
Q 004205 438 EAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEI 517 (768)
Q Consensus 438 ~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~ 517 (768)
.+.++.||++||.
T Consensus 231 -------------------------------------------------------------~~~~~~~S~~g~~------ 243 (340)
T 3lpc_A 231 -------------------------------------------------------------RGIRASFSNYGVD------ 243 (340)
T ss_dssp -------------------------------------------------------------TSSBCTTCCBSTT------
T ss_pred -------------------------------------------------------------CCCcCCCCCCCCC------
Confidence 2567899999985
Q ss_pred ccCceeeCCceEEEEecCCC---CCcceEEeccccchhHHHHHHHHHHHHh-C---CCCCHHHHHHHHHhhcccccCCCC
Q 004205 518 LKPDVTAPGLNIIAAWSPAV---GKMQFNILSGTSMACPHVTGIATLIKAV-H---PSWSPSAIKSAIMTTATALDKNHK 590 (768)
Q Consensus 518 ~KPDI~APG~~I~Sa~~~~~---~~~~y~~~sGTSmAaP~VAG~aALl~q~-~---p~lsp~~ik~~L~~TA~~~~~~g~ 590 (768)
|||+|||++|+++++... ..+.|..++|||||||||||++|||+|+ + |.|++++||++|++||+++.
T Consensus 244 --~di~ApG~~i~s~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~---- 317 (340)
T 3lpc_A 244 --VDLAAPGQDILSTVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFN---- 317 (340)
T ss_dssp --CCEEEECSSEEEEEESCSSSCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCS----
T ss_pred --ceEEecCCCeecccCCCCcCCCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCC----
Confidence 499999999999987531 1345999999999999999999999998 5 99999999999999999642
Q ss_pred CccCCCCCCCCCCCcccccccCccccCCC
Q 004205 591 PITVDPKGRRGNAFDYGSGFLNPRKVLSP 619 (768)
Q Consensus 591 p~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 619 (768)
..+...+|+|+||+.+|++.
T Consensus 318 ---------~~~~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 318 ---------GRLDRALGSGIVDAEAAVNS 337 (340)
T ss_dssp ---------SCCSSCCCSSBCCHHHHHHH
T ss_pred ---------CCCCCCcccceecHHHHHHH
Confidence 23456899999999999874
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=469.18 Aligned_cols=352 Identities=22% Similarity=0.217 Sum_probs=247.4
Q ss_pred CCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC---CCHHHHHHHHHHHHH-----cCCcEE
Q 004205 220 RDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG---CYDVDLLAAFDDAIR-----DGVHIL 291 (768)
Q Consensus 220 ~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g---~~~~~i~~ai~~a~~-----~g~dVI 291 (768)
.|++||||||||||||.. ++ ..+.||||+|+|+.+|+++..+ .+..+++++|.+|++ .|++||
T Consensus 267 ~D~~GHGThVAGIIAa~~-N~--------~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVI 337 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH-SS--------RDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVI 337 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC-SS--------SSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred CCCCCcHHHHHHHHhcCC-CC--------CCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEE
Confidence 478999999999999986 22 2348999999999999997643 255778888888877 799999
Q ss_pred EeccCCCCCCCCCchhHHHHHHHHhh-cCCcEEEEeccCCCC-C--CCcccC--CCceEEEcccCCCccceeeEEeCCCc
Q 004205 292 SLSLGPEAPQGDYFSDAISIGSFHAT-SRGILVVASAGNEGN-E--GSVTNL--APWMFTIAASSTDRDFTSEIVLGDGA 365 (768)
Q Consensus 292 N~SlG~~~~~~~~~~~~~~~a~~~a~-~~Gi~vV~AAGN~g~-~--~~~~~~--~p~vitVgAs~~~~~~~~~~~~~~~~ 365 (768)
|||||.... ....+.+..++.++. ++|++||+||||+|. . ...|+. ++++|+|||++...........
T Consensus 338 NmS~G~~~~--~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~---- 411 (1354)
T 3lxu_X 338 NMSYGEHAN--WSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM---- 411 (1354)
T ss_dssp EECCCCCCS--CSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC--------
T ss_pred EcCCccCCC--CCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc----
Confidence 999998752 123456777777776 899999999999998 3 335664 8999999997543210000000
Q ss_pred eEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEE
Q 004205 366 NFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMI 445 (768)
Q Consensus 366 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i 445 (768)
T Consensus 412 -------------------------------------------------------------------------------- 411 (1354)
T 3lxu_X 412 -------------------------------------------------------------------------------- 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeC
Q 004205 446 LVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAP 525 (768)
Q Consensus 446 ~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 525 (768)
.....+.++.|||+||+. ++++||||+||
T Consensus 412 -------------------------------------------------~~~~~g~~asFSS~GPt~--dg~~KpDIaAP 440 (1354)
T 3lxu_X 412 -------------------------------------------------REKLPGNVYTWTSRDPCI--DGGQGVTVCAP 440 (1354)
T ss_dssp -------------------------------------------------------CCCCCCCCSCCS--SSSCCEEEEEE
T ss_pred -------------------------------------------------ccCCCCccccccCCCCCc--cCCCcceEEec
Confidence 011226789999999997 89999999999
Q ss_pred CceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHH----hCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCC
Q 004205 526 GLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKA----VHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRG 601 (768)
Q Consensus 526 G~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~ 601 (768)
|++|+++... ..+.|..++|||||||||||++|||++ ++|+|++.+||++|++||++++ ..
T Consensus 441 G~~I~St~~~--~~~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~-------------~~ 505 (1354)
T 3lxu_X 441 GGAIASVPQF--TMSKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLG-------------YV 505 (1354)
T ss_dssp C-----------------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCT-------------TS
T ss_pred CceEEEeecC--CCCceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCC-------------CC
Confidence 9999998653 235699999999999999999999987 7999999999999999999652 13
Q ss_pred CCCcccccccCccccCCCCeeecCCCcchhhhhhccCCC-ccceeEeecCCCcCCCCCCCCCCCCCCeEEecCCCccEEE
Q 004205 602 NAFDYGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGYD-EKSLHLVTRDNSKCSQKLPAPYDLNYPSITVPNLKGNFSV 680 (768)
Q Consensus 602 ~~~~~G~G~vn~~~Al~~~l~~~~~~~~y~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~t~ 680 (768)
+++.||+|+||+.+|++..+.|+..+++|+.|+|..+.. .+.|.+- .. ......++
T Consensus 506 ~~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~rgIylR--~~---------------------~~~~~~~~ 562 (1354)
T 3lxu_X 506 DPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIHLR--QG---------------------VQRNSIDY 562 (1354)
T ss_dssp CTTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBSSEEEC--SS---------------------CCCSCEEE
T ss_pred CcccccCCEeCHHHHHHHHHhcCCCCccceEEEEEecCCCCCceEEe--cc---------------------ccCCceEE
Confidence 456899999999999999999999999999999998853 3433221 11 01122333
Q ss_pred EEEEE----ecC---C-CceeE--EEEEeCCCceEEEEecCEEEEcCCCeEEEEEEEEEecCCCCceEEEEEEEEcC---
Q 004205 681 TRSVT----NVG---K-PRSIY--KAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLTSPPKGYGFGYLSWKNG--- 747 (768)
Q Consensus 681 ~~tv~----N~~---~-~~~ty--~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~i~~~~~--- 747 (768)
+++|+ |.. . ....| ++.+.... .+-..|..|.+ .++.++|.|.+++..+..+.+++.|...|-
T Consensus 563 tv~V~p~f~~~~~~~~~~~i~f~~~l~L~~t~--~wv~~p~~l~l--~~~~r~~~v~vDp~~L~~G~h~~~v~~~D~~~~ 638 (1354)
T 3lxu_X 563 NVYIEPIFYNDKEADPKDKFNFNVRLNLIASQ--PWVQCGAFLDL--SYGTRSIAVRVDPTGLQPGVHSAVIRAYDTDCV 638 (1354)
T ss_dssp EEEEEEEESSCSCSSSTTCSCCCCEEEEEESS--TTEEECSCEEC--TTSCEEEEEEECGGGCCSEEEEEEEEEEESSCT
T ss_pred EEEEeeeecCcccCChhhccceEEEEEEecCC--Cceecccceee--cCCCceEEEEECCCCCCCcceeEEEEEEEcCCc
Confidence 33332 211 1 11112 22222111 12333777777 577899999999988888999999998763
Q ss_pred --ceEEEEEEEEEE
Q 004205 748 --KLRVTSPLVVQV 759 (768)
Q Consensus 748 --~~~v~~P~~~~~ 759 (768)
+...|+|+.|..
T Consensus 639 ~~gp~f~ipvTv~~ 652 (1354)
T 3lxu_X 639 QKGSLFEIPVTVVQ 652 (1354)
T ss_dssp TSCCSEEEEEEEEE
T ss_pred ccCceEEeeEEEEe
Confidence 358999999984
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-49 Score=442.90 Aligned_cols=283 Identities=25% Similarity=0.301 Sum_probs=224.3
Q ss_pred CCCcCC-CCCCCCcceEEEEEeCCCCC------CCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCcc
Q 004205 133 SMEIPG-FSTKNQVNIIVGFIDTGIWP------ESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYE 205 (768)
Q Consensus 133 ~~~~~~-~~~~Gg~GV~VgVIDtGid~------~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~ 205 (768)
++.+|+ .+++| +||+|||||||||+ .||+|.+ ++...+.|.++
T Consensus 10 ~~~~~~~~g~~G-~gv~VaViDtGvd~~~~~~~~hp~l~~---------------------------~i~~~~~~~~~-- 59 (434)
T 1wmd_A 10 ADVAQSSYGLYG-QGQIVAVADTGLDTGRNDSSMHEAFRG---------------------------KITALYALGRT-- 59 (434)
T ss_dssp HHHHHHHHCCSC-TTCEEEEEESCCTTSCSSTTSCTTTTT---------------------------CEEEEEETTTT--
T ss_pred chhhhhccCCCC-cccEEEEEecCcCCCCCCcccCcccCC---------------------------CEeeeccccCC--
Confidence 448897 78999 99999999999999 7999953 34444455332
Q ss_pred ccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCC---CHHHHHHHHHH
Q 004205 206 AEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGC---YDVDLLAAFDD 282 (768)
Q Consensus 206 ~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~---~~~~i~~ai~~ 282 (768)
..+.|..||||||||||+|++. .+.||||+|+|+.+|+++..+. ..+++.++|++
T Consensus 60 -----------~~~~d~~gHGT~VAgiiag~g~-----------~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~ai~~ 117 (434)
T 1wmd_A 60 -----------NNANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQ 117 (434)
T ss_dssp -----------TCCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHH
T ss_pred -----------CCCCCCCCcHHHHHHHHHcCCC-----------CceeeCCCCEEEEEEeecCCCccccccHHHHHHHHH
Confidence 2466889999999999998641 1489999999999999987653 34679999999
Q ss_pred HHHcCCcEEEeccCCCCCCCCCchhHHHHHHHHh-hcCCcEEEEeccCCCC---CCCcccCCCceEEEcccCCCccceee
Q 004205 283 AIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHA-TSRGILVVASAGNEGN---EGSVTNLAPWMFTIAASSTDRDFTSE 358 (768)
Q Consensus 283 a~~~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~---~~~~~~~~p~vitVgAs~~~~~~~~~ 358 (768)
|+++|++|||||||.... . ..+....+++++ .++|++||+||||+|. ....|+.++++|+|||++..+...
T Consensus 118 a~~~g~~Vin~S~G~~~~-~--~~~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~-- 192 (434)
T 1wmd_A 118 AYSAGARIHTNSWGAAVN-G--AYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF-- 192 (434)
T ss_dssp HHHTTCSEEEECCCBCCT-T--CCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG--
T ss_pred HHhcCCeEEEecCCCCcC-C--cCCHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCccc--
Confidence 999999999999998741 1 123445556555 5899999999999997 345678899999999975432100
Q ss_pred EEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHH
Q 004205 359 IVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKE 438 (768)
Q Consensus 359 ~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~ 438 (768)
+
T Consensus 193 ------------------------------------------------------------------~------------- 193 (434)
T 1wmd_A 193 ------------------------------------------------------------------G------------- 193 (434)
T ss_dssp ------------------------------------------------------------------C-------------
T ss_pred ------------------------------------------------------------------C-------------
Confidence 0
Q ss_pred cCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcc
Q 004205 439 AGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEIL 518 (768)
Q Consensus 439 ~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~ 518 (768)
. .....+.++.|||+||+. ++++
T Consensus 194 --~-----------------------------------------------------~~~~~~~~a~fS~~G~~~--~g~~ 216 (434)
T 1wmd_A 194 --S-----------------------------------------------------YADNINHVAQFSSRGPTK--DGRI 216 (434)
T ss_dssp --G-----------------------------------------------------GGSCTTSBCTTSCCCCCT--TSCC
T ss_pred --c-----------------------------------------------------ccCCCCccccccCCCCCC--CCCC
Confidence 0 011236789999999998 8999
Q ss_pred cCceeeCCceEEEEecCCC--------CCcceEEeccccchhHHHHHHHHHHHHhCCCC-----CHHHHHHHHHhhcccc
Q 004205 519 KPDVTAPGLNIIAAWSPAV--------GKMQFNILSGTSMACPHVTGIATLIKAVHPSW-----SPSAIKSAIMTTATAL 585 (768)
Q Consensus 519 KPDI~APG~~I~Sa~~~~~--------~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~l-----sp~~ik~~L~~TA~~~ 585 (768)
||||+|||++|+++++... ....|..++|||||||||||++|||+|++|++ ++++||++|++||+++
T Consensus 217 kpdi~ApG~~i~s~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~ 296 (434)
T 1wmd_A 217 KPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADI 296 (434)
T ss_dssp CCCEEEECSSEEEECCTTCCGGGSSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCC
T ss_pred CceEEcCCCCeEecCCCCCCCcccccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCccc
Confidence 9999999999999986321 13569999999999999999999999998865 8999999999999964
Q ss_pred cCCCCCccCCCCCCCCCCCcccccccCccccCCCC
Q 004205 586 DKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLSPG 620 (768)
Q Consensus 586 ~~~g~p~~~~~~~~~~~~~~~G~G~vn~~~Al~~~ 620 (768)
. ...+.+.||||++|+.+|+...
T Consensus 297 ~------------~~~~~~~~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 297 G------------LGYPNGNQGWGRVTLDKSLNVA 319 (434)
T ss_dssp S------------SCSSCTTTTTCBCCHHHHHTCE
T ss_pred C------------CCCCCccCCcCeEeHHHhcccc
Confidence 2 2346779999999999999754
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-48 Score=411.19 Aligned_cols=234 Identities=24% Similarity=0.336 Sum_probs=201.5
Q ss_pred CCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccc
Q 004205 133 SMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVE 212 (768)
Q Consensus 133 ~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~ 212 (768)
...+|..+.+| +||+|||||||||++||+|.+ ++...++|.++.
T Consensus 18 ~~~aw~~~~~G-~gv~VaViDtGvd~~h~~l~~---------------------------~~~~~~~~~~~~-------- 61 (284)
T 1sh7_A 18 LDRNYNANFDG-FGVTAYVIDTGVNNNHEEFGG---------------------------RSVSGYDFVDND-------- 61 (284)
T ss_dssp CCSBCCCSCCC-TTCEEEEEESCCCTTCTTTTT---------------------------CEEEEEETTTTB--------
T ss_pred chhhhhcCCCC-CCCEEEEEcCCCCCCChhHcC---------------------------CccccccccCCC--------
Confidence 35689999999 999999999999999999963 233444554331
Q ss_pred cccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHc--CCc
Q 004205 213 TVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRD--GVH 289 (768)
Q Consensus 213 ~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~--g~d 289 (768)
..+.|..||||||||||+|+. .||||+|+|+.+|+++..+ +..+++++||+|++++ +++
T Consensus 62 ----~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~~~~ 123 (284)
T 1sh7_A 62 ----ADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPS 123 (284)
T ss_dssp ----SCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCCSSE
T ss_pred ----CCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCCCCc
Confidence 245688999999999999864 6999999999999998766 6788999999999984 799
Q ss_pred EEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC--CCCcccCCCceEEEcccCCCccceeeEEeCCCceE
Q 004205 290 ILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN--EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANF 367 (768)
Q Consensus 290 VIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~--~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~ 367 (768)
|||||||... ...+..+++++.++|++||+||||+|. ....|+..+++|+|||++.
T Consensus 124 Vin~S~G~~~------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------------- 181 (284)
T 1sh7_A 124 VANMSLGGGQ------STALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTS---------------- 181 (284)
T ss_dssp EEEECCCBSC------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECT----------------
T ss_pred EEEeCCCCCC------CHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecC----------------
Confidence 9999999873 357788888999999999999999998 4567888999999997531
Q ss_pred ecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEE
Q 004205 368 TGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILV 447 (768)
Q Consensus 368 ~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~ 447 (768)
T Consensus 182 -------------------------------------------------------------------------------- 181 (284)
T 1sh7_A 182 -------------------------------------------------------------------------------- 181 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCc
Q 004205 448 DEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGL 527 (768)
Q Consensus 448 n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~ 527 (768)
.+.++.||++||.. ||+|||+
T Consensus 182 ---------------------------------------------------~~~~~~~S~~G~~~--------di~ApG~ 202 (284)
T 1sh7_A 182 ---------------------------------------------------SDSRSSFSNWGSCV--------DLFAPGS 202 (284)
T ss_dssp ---------------------------------------------------TSBBCTTCCBSTTC--------CEEEECS
T ss_pred ---------------------------------------------------CCCcCcccCCCCcc--------EEEeccC
Confidence 25678999999976 9999999
Q ss_pred eEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccc
Q 004205 528 NIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATAL 585 (768)
Q Consensus 528 ~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~ 585 (768)
+|+++++. +.|..++|||||||||||++|||+|++|+|+++|||++|++||++.
T Consensus 203 ~i~s~~~~----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~ 256 (284)
T 1sh7_A 203 QIKSAWYD----GGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASEN 256 (284)
T ss_dssp SEEEECTT----SSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred CeEEecCC----CCEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccC
Confidence 99999874 4699999999999999999999999999999999999999999965
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-48 Score=409.65 Aligned_cols=238 Identities=29% Similarity=0.357 Sum_probs=200.8
Q ss_pred ccccccccCCCC------cCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEE
Q 004205 124 DFMGLMGEESME------IPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGA 197 (768)
Q Consensus 124 ~~~g~~~~~~~~------~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~ 197 (768)
..|+++.++++. .|+. .+| +||+|+|||||||++||+|.+ ++...
T Consensus 6 ~~W~l~~i~~~~~~~~~~~~~~-~~G-~gv~VaViDsGvd~~H~~l~~---------------------------~~~~~ 56 (279)
T 2pwa_A 6 APWGLARISSTSPGTSTYYYDE-SAG-QGSCVYVIDTGIEASHPEFEG---------------------------RAQMV 56 (279)
T ss_dssp CCHHHHHHTCSSTTCCCEECCT-TTT-TTEEEEEEESCCCTTCGGGTT---------------------------CEEEE
T ss_pred CCcChhhcCCCCcccccccccC-CCC-CCCEEEEEeCCCCCCChhHhC---------------------------ccccc
Confidence 345666555544 4554 678 999999999999999999963 23333
Q ss_pred EeccCCccccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHH
Q 004205 198 RYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDL 276 (768)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i 276 (768)
++|.+ .+.|..||||||||||+|+. .||||+|+|+.+|++++.+ +..+++
T Consensus 57 ~~~~~---------------~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~ 107 (279)
T 2pwa_A 57 KTYYY---------------SSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTI 107 (279)
T ss_dssp EESSS---------------CSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHH
T ss_pred cCCCC---------------CCCCCCCCHHHHHHHHHhcc--------------cccCCCCEEEEEEeEcCCCCcCHHHH
Confidence 44431 24578899999999999863 7999999999999998776 788999
Q ss_pred HHHHHHHHHcCC-------cEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC--CCCcccCCCceEEEc
Q 004205 277 LAAFDDAIRDGV-------HILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN--EGSVTNLAPWMFTIA 347 (768)
Q Consensus 277 ~~ai~~a~~~g~-------dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~--~~~~~~~~p~vitVg 347 (768)
++||+|++++++ +|||||||... .+.+..+++++.++|++||+||||+|. ....|+..+++|+||
T Consensus 108 ~~ai~~a~~~~~~~~~~~~~Vin~S~G~~~------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vg 181 (279)
T 2pwa_A 108 IAGMDFVASDKNNRNCPKGVVASLSLGGGY------SSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVG 181 (279)
T ss_dssp HHHHHHHHHHGGGSCCTTEEEEEECCCEEC------CHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEE
T ss_pred HHHHHHHHhcCccccCCCccEEEecCCCCC------CHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEE
Confidence 999999999887 99999999752 367888888999999999999999998 345688899999999
Q ss_pred ccCCCccceeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCch
Q 004205 348 ASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTE 427 (768)
Q Consensus 348 As~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~ 427 (768)
|++.
T Consensus 182 a~~~---------------------------------------------------------------------------- 185 (279)
T 2pwa_A 182 ASDR---------------------------------------------------------------------------- 185 (279)
T ss_dssp EECT----------------------------------------------------------------------------
T ss_pred EecC----------------------------------------------------------------------------
Confidence 7531
Q ss_pred hHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccC
Q 004205 428 SKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSS 507 (768)
Q Consensus 428 ~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs 507 (768)
.+.++.||+
T Consensus 186 -----------------------------------------------------------------------~~~~~~~S~ 194 (279)
T 2pwa_A 186 -----------------------------------------------------------------------YDRRSSFSN 194 (279)
T ss_dssp -----------------------------------------------------------------------TSBBCTTCC
T ss_pred -----------------------------------------------------------------------CCCcCCcCC
Confidence 256789999
Q ss_pred CCCCCCCCCcccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccc
Q 004205 508 KGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATAL 585 (768)
Q Consensus 508 ~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~ 585 (768)
|||.. ||+|||++|+++++. +.|..++|||||||||||++|||+|+ |+++++|||++|++||++.
T Consensus 195 ~G~~~--------di~APG~~i~s~~~~----~~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~ 259 (279)
T 2pwa_A 195 YGSVL--------DIFGPGTDILSTWIG----GSTRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKG 259 (279)
T ss_dssp BSTTC--------CEEEECSSEEEEETT----TEEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEES
T ss_pred CCCcc--------eEEEecCCeEEeecC----CCEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccc
Confidence 99976 999999999999884 46999999999999999999999999 9999999999999999964
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-48 Score=405.89 Aligned_cols=236 Identities=27% Similarity=0.345 Sum_probs=201.1
Q ss_pred CCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccc
Q 004205 133 SMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVE 212 (768)
Q Consensus 133 ~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~ 212 (768)
...+|..+++| +||+|||||||||++||+|.+ ++...++|.++
T Consensus 20 ~~~~~~~~~~G-~gv~VaViDtGid~~Hpdl~~---------------------------~~~~~~d~~~~--------- 62 (278)
T 2b6n_A 20 LDNNYHTDYDG-SGVTAFVIDTGVLNTHNEFGG---------------------------RASSGYDFIDN--------- 62 (278)
T ss_dssp CCSEEECSCCC-TTCEEEEEESCCCTTCGGGTT---------------------------CEEEEEETTTT---------
T ss_pred cchhcccCCCC-CCCEEEEEeCCCCCCChhHhc---------------------------ccccCeecCCC---------
Confidence 44689999999 999999999999999999963 23334455432
Q ss_pred cccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHH--cCCc
Q 004205 213 TVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIR--DGVH 289 (768)
Q Consensus 213 ~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~--~g~d 289 (768)
..++.|..||||||||||+|+. .||||+|+|+.+|++++.+ +..+++++||+|+++ .+++
T Consensus 63 ---~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~g~~ 125 (278)
T 2b6n_A 63 ---DYDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPA 125 (278)
T ss_dssp ---BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSE
T ss_pred ---CCCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCCCCe
Confidence 1245688999999999999863 7999999999999998766 778899999999998 5899
Q ss_pred EEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC--CCCcccCCCceEEEcccCCCccceeeEEeCCCceE
Q 004205 290 ILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN--EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANF 367 (768)
Q Consensus 290 VIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~--~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~ 367 (768)
|||||||... ...+..+++++.++|++||+||||+|. ....|+..+++|+|||++.
T Consensus 126 Vin~S~G~~~------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------------- 183 (278)
T 2b6n_A 126 VANMSLGGGA------SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTS---------------- 183 (278)
T ss_dssp EEEECCCEEC------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT----------------
T ss_pred EEEECCCCCc------CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCC----------------
Confidence 9999999863 356778888899999999999999998 3456788899999997531
Q ss_pred ecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEE
Q 004205 368 TGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILV 447 (768)
Q Consensus 368 ~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~ 447 (768)
T Consensus 184 -------------------------------------------------------------------------------- 183 (278)
T 2b6n_A 184 -------------------------------------------------------------------------------- 183 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCc
Q 004205 448 DEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGL 527 (768)
Q Consensus 448 n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~ 527 (768)
.+.++.||++||.. ||+|||+
T Consensus 184 ---------------------------------------------------~~~~~~~S~~G~~~--------di~ApG~ 204 (278)
T 2b6n_A 184 ---------------------------------------------------NDSRSSFSNYGTCL--------DIYAPGS 204 (278)
T ss_dssp ---------------------------------------------------TSBBCTTCCBSTTC--------CEEEECS
T ss_pred ---------------------------------------------------CCCcCCcCCCCCCC--------eEEeCCC
Confidence 25678999999965 9999999
Q ss_pred eEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccc
Q 004205 528 NIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATAL 585 (768)
Q Consensus 528 ~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~ 585 (768)
+|++++.. ..+.|..++|||||||||||++|||+|++|+|+++|||++|++||++.
T Consensus 205 ~i~s~~~~--~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~ 260 (278)
T 2b6n_A 205 SITSSWYT--SNSATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATAD 260 (278)
T ss_dssp SEEEECTT--STTCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred CeECcccC--CCCCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccC
Confidence 99999874 335699999999999999999999999999999999999999999864
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=405.17 Aligned_cols=237 Identities=27% Similarity=0.349 Sum_probs=203.2
Q ss_pred cCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccc
Q 004205 131 EESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDI 210 (768)
Q Consensus 131 ~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~ 210 (768)
++...+|..+.+| +||+|||||||||++||+|.+ ++...+++..
T Consensus 18 ~~~~~a~~~~~~G-~gv~VaViDtGvd~~h~~l~~---------------------------~~~~~~~~~~-------- 61 (276)
T 4dzt_A 18 LPLSNSYTYTATG-RGVNVYVIDTGIRTTHREFGG---------------------------RARVGYDALG-------- 61 (276)
T ss_dssp SSCCSCEECSCCC-TTCEEEEEESCCCTTCGGGTT---------------------------CEEEEEETTS--------
T ss_pred CCcccceecCCCC-CCcEEEEEccCCCCCChhHcc---------------------------CeeccccCCC--------
Confidence 3456789999999 999999999999999999963 2333344432
Q ss_pred cccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHc--C
Q 004205 211 VETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRD--G 287 (768)
Q Consensus 211 ~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~--g 287 (768)
....|.+||||||||||+|.. .||||+|+|+.+|++++.+ +..++++++++|+++. +
T Consensus 62 ------~~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~ 121 (276)
T 4dzt_A 62 ------GNGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRR 121 (276)
T ss_dssp ------SCSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCS
T ss_pred ------CCCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCC
Confidence 235578899999999999864 7999999999999998766 7889999999999987 8
Q ss_pred CcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC--CCCcccCCCceEEEcccCCCccceeeEEeCCCc
Q 004205 288 VHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN--EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGA 365 (768)
Q Consensus 288 ~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~--~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~ 365 (768)
++|||||||... ...+..+++++.++|+++|+||||+|. ....|+..+++|+|||++
T Consensus 122 ~~vin~S~g~~~------~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~--------------- 180 (276)
T 4dzt_A 122 PAVANMSLGGGV------STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATT--------------- 180 (276)
T ss_dssp SEEEEECCCEEC------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC---------------
T ss_pred CeEEEECCCCCC------CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEEC---------------
Confidence 999999999763 467888888999999999999999998 344578889999999743
Q ss_pred eEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEE
Q 004205 366 NFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMI 445 (768)
Q Consensus 366 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i 445 (768)
T Consensus 181 -------------------------------------------------------------------------------- 180 (276)
T 4dzt_A 181 -------------------------------------------------------------------------------- 180 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeC
Q 004205 446 LVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAP 525 (768)
Q Consensus 446 ~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 525 (768)
..+.++.||++||.. ||+||
T Consensus 181 ----------------------------------------------------~~~~~~~~S~~g~~~--------dv~Ap 200 (276)
T 4dzt_A 181 ----------------------------------------------------SSDARASFSNYGSCV--------DLFAP 200 (276)
T ss_dssp ----------------------------------------------------TTSBBCTTCCBSTTC--------CEEEE
T ss_pred ----------------------------------------------------CCCCcCCcCCCCCCc--------eEEeC
Confidence 125678999999987 99999
Q ss_pred CceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhccccc
Q 004205 526 GLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALD 586 (768)
Q Consensus 526 G~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~ 586 (768)
|++|+++++. ....|..++|||||||+|||++|||+|++|+++++|||++|++||++..
T Consensus 201 G~~i~s~~~~--~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 259 (276)
T 4dzt_A 201 GASIPSAWYT--SDTATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGR 259 (276)
T ss_dssp CSSEEEECTT--SSSCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred CCCeEccccC--CCCceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCc
Confidence 9999999874 3346999999999999999999999999999999999999999999753
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-47 Score=424.77 Aligned_cols=287 Identities=20% Similarity=0.185 Sum_probs=206.8
Q ss_pred ccccccCCCC----cCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEecc
Q 004205 126 MGLMGEESME----IPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYM 201 (768)
Q Consensus 126 ~g~~~~~~~~----~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~ 201 (768)
|+|+++.... .|..+.+| +||+|+|||||||++||+|.+. .......+.
T Consensus 4 WgL~rI~~~~~~~~aw~~~~tG-~GV~VaVIDTGId~~HpdL~gr--------------------------~~~~~~~~v 56 (546)
T 2qtw_B 4 WNLERITPPRYRADEYQPPDGG-SLVEVYLLDTSIQSDHREIEGR--------------------------VMVTDFENV 56 (546)
T ss_dssp HHHHHTSCSSCC--------CC-TTSEEEEEESCCCTTSTTTTTT--------------------------EEEEEEECC
T ss_pred CChhhcCCCcccchhcccCCCC-CCcEEEEECCCCCCCChHHccc--------------------------ccccCcccc
Confidence 4555554433 78888889 9999999999999999999742 111111111
Q ss_pred CCccccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHH
Q 004205 202 SGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAF 280 (768)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai 280 (768)
.+.+.. . ....+.|.+||||||||||+|+. .||||+|+|+.+|+++..+ ++.+++++||
T Consensus 57 ~~~dg~-----~-f~~~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai 116 (546)
T 2qtw_B 57 PEEDGT-----R-FHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGL 116 (546)
T ss_dssp CCCC-------------CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHH
T ss_pred cCCCCc-----c-ccCCCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHH
Confidence 110000 0 00235688999999999999864 6999999999999998766 6788999999
Q ss_pred HHHHHc------CCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC--CCCcccCCCceEEEcccCCC
Q 004205 281 DDAIRD------GVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN--EGSVTNLAPWMFTIAASSTD 352 (768)
Q Consensus 281 ~~a~~~------g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~--~~~~~~~~p~vitVgAs~~~ 352 (768)
+|+++. +++|||||||... ...+..+++++.++|++||+||||+|. ....|+..+++|+|||++.+
T Consensus 117 ~~a~~~~~~~~~g~~VINmSlGg~~------s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~ 190 (546)
T 2qtw_B 117 EFIRKSQLVQPVGPLVVLLPLAGGY------SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQ 190 (546)
T ss_dssp HHHHHHHHHSCCSCEEEEECEEEEC------CHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTT
T ss_pred HHHHHhhhhccCCCeEEEecCCCCC------cHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCC
Confidence 999984 8999999999752 357788888999999999999999998 45568889999999986432
Q ss_pred ccceeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHH
Q 004205 353 RDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRK 432 (768)
Q Consensus 353 ~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k 432 (768)
..
T Consensus 191 g~------------------------------------------------------------------------------ 192 (546)
T 2qtw_B 191 DQ------------------------------------------------------------------------------ 192 (546)
T ss_dssp SC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred HHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCC
Q 004205 433 SMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNA 512 (768)
Q Consensus 433 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 512 (768)
....-..||+||+.+
T Consensus 193 -----------------------------------------------------------------~a~~s~~fSn~G~~v 207 (546)
T 2qtw_B 193 -----------------------------------------------------------------PVTLGTLGTNFGRCV 207 (546)
T ss_dssp -----------------------------------------------------------------BCEETTEECCBSTTC
T ss_pred -----------------------------------------------------------------cccccCCcCCCCCcc
Confidence 000001289999854
Q ss_pred CCCCcccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCc
Q 004205 513 LNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPI 592 (768)
Q Consensus 513 ~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~ 592 (768)
||+|||++|+++++. +...|..++|||||||||||++|||+|++|+|+|+|||++|++||.+.......+
T Consensus 208 --------DI~APG~~I~St~~~--~~~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~i~~~~~ 277 (546)
T 2qtw_B 208 --------DLFAPGEDIIGASSD--CSTCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDVINEAWF 277 (546)
T ss_dssp --------CEEEECSSEEEECTT--STTCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESCSCGGGS
T ss_pred --------eEEecCccEEeeccC--CCCcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccccCCccC
Confidence 999999999999884 3356999999999999999999999999999999999999999998643211000
Q ss_pred c-----CCCC---CCCCCCCcccccc--cCccccCC
Q 004205 593 T-----VDPK---GRRGNAFDYGSGF--LNPRKVLS 618 (768)
Q Consensus 593 ~-----~~~~---~~~~~~~~~G~G~--vn~~~Al~ 618 (768)
. ..++ ........+|+|+ .++..+..
T Consensus 278 p~~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~a~s 313 (546)
T 2qtw_B 278 PEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHS 313 (546)
T ss_dssp CHHHHTTSCCEECCCCCTTCC--CCCEEEEEECCCC
T ss_pred ccccCCCCccchhccCCcccccCCCcchhchhccCC
Confidence 0 0001 1122456678888 77777765
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-47 Score=427.91 Aligned_cols=296 Identities=17% Similarity=0.138 Sum_probs=218.7
Q ss_pred cCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccc
Q 004205 131 EESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDI 210 (768)
Q Consensus 131 ~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~ 210 (768)
+++..+|+.+++| +||+|||||||||++||+|.+.-. . ...++|.++..
T Consensus 25 i~~~~aw~~g~~G-~gv~VaViDtGvd~~Hpdl~~~~~------------~-------------~~~~d~~~~~~----- 73 (471)
T 1p8j_A 25 LNVKEAWAQGFTG-HGIVVSILDDGIEKNHPDLAGNYD------------P-------------GASFDVNDQDP----- 73 (471)
T ss_dssp CCCHHHHHTTCSC-TTCEEEEEEBCCCTTCTTTGGGBC------------G-------------GGCEETTTTBS-----
T ss_pred CChHHHHhcCCCC-CCCEEEEEeCCcCCCChhHhhccC------------c-------------cCcccccCCCC-----
Confidence 6778999999999 999999999999999999974210 0 01123332211
Q ss_pred cccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHH-cCCc
Q 004205 211 VETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIR-DGVH 289 (768)
Q Consensus 211 ~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~-~g~d 289 (768)
.+.+...+.|.+||||||||||||...++. .+.||||+|+|+.+|+++ +..+++++|++++++ ++++
T Consensus 74 -~p~~~~~~~d~~gHGT~vAGiiaa~~~n~~--------g~~GvAp~a~i~~~rv~~---g~~~~~~~ai~~a~~~~~~~ 141 (471)
T 1p8j_A 74 -DPQPRYTQMNDNRHGTRCAGEVAAVANNGV--------CGVGVAYNARIGGVRMLD---GEVTDAVEARSLGLNPNHIH 141 (471)
T ss_dssp -CCCCCCCTTCTTCHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECSS---SCCCHHHHHHHHTSCTTTCC
T ss_pred -CCCCccCCCCCCCcHHHHHHHHHeeccCCC--------CCEEECCCCeEEEEEccC---CchhHHHHHHHhhhccCCCe
Confidence 011112456889999999999999764332 238999999999999985 446789999999999 9999
Q ss_pred EEEeccCCCCCCC--CCchhHHHHHHHHhh-----cCCcEEEEeccCCCC-CC----CcccCCCceEEEcccCCCcccee
Q 004205 290 ILSLSLGPEAPQG--DYFSDAISIGSFHAT-----SRGILVVASAGNEGN-EG----SVTNLAPWMFTIAASSTDRDFTS 357 (768)
Q Consensus 290 VIN~SlG~~~~~~--~~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~-~~----~~~~~~p~vitVgAs~~~~~~~~ 357 (768)
|||||||....+. ......+..++.++. .+|++||+||||+|. .. ..+..++++|+|||++.
T Consensus 142 Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~------ 215 (471)
T 1p8j_A 142 IYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ------ 215 (471)
T ss_dssp EEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT------
T ss_pred EEEeccCcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccC------
Confidence 9999999864211 011233444555554 479999999999997 22 12334578999997531
Q ss_pred eEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHH
Q 004205 358 EIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVK 437 (768)
Q Consensus 358 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~ 437 (768)
T Consensus 216 -------------------------------------------------------------------------------- 215 (471)
T 1p8j_A 216 -------------------------------------------------------------------------------- 215 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCc
Q 004205 438 EAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEI 517 (768)
Q Consensus 438 ~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~ 517 (768)
.+.++.||++||.. ...
T Consensus 216 -------------------------------------------------------------~g~~a~~S~~g~~~--~~~ 232 (471)
T 1p8j_A 216 -------------------------------------------------------------FGNVPWYSEACSST--LAT 232 (471)
T ss_dssp -------------------------------------------------------------TSCCCTTCCBCTTC--CEE
T ss_pred -------------------------------------------------------------CCCcccccCCCCcc--eEE
Confidence 25678999999987 455
Q ss_pred ccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCC
Q 004205 518 LKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPK 597 (768)
Q Consensus 518 ~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~ 597 (768)
.+|...+||..|+++... +..|..++|||||||||||++|||+|++|+|++++||++|++||++++......... .
T Consensus 233 ~~~~~~~~g~~i~st~~~---~~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n-~ 308 (471)
T 1p8j_A 233 TYSSGNQNEKQIVTTDLR---QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATN-G 308 (471)
T ss_dssp EECCCSTTSCCEEEEETT---TEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEEC-T
T ss_pred eCCCCCCCCCCEEEeeCC---CCccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceec-C
Confidence 666777778899999863 246999999999999999999999999999999999999999999875432222111 1
Q ss_pred CCCCCCCcccccccCccccCCCCee
Q 004205 598 GRRGNAFDYGSGFLNPRKVLSPGLI 622 (768)
Q Consensus 598 ~~~~~~~~~G~G~vn~~~Al~~~l~ 622 (768)
........||+|+||+.+|++....
T Consensus 309 ~g~~~~~~~G~G~vda~~Av~~a~~ 333 (471)
T 1p8j_A 309 VGRKVSHSYGYGLLDAGAMVALAQN 333 (471)
T ss_dssp TSCEEBTTTBTCBCCHHHHHHHHHT
T ss_pred CCcccCCCCCCEEEcHhHHHHHhhc
Confidence 1123457899999999999985443
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-46 Score=396.05 Aligned_cols=227 Identities=30% Similarity=0.397 Sum_probs=194.5
Q ss_pred CcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccc
Q 004205 135 EIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETV 214 (768)
Q Consensus 135 ~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 214 (768)
.+|+.. +| +||+|||||||||++||+|.+ ++...+.|.++
T Consensus 24 ~~~~~~-~G-~gv~VaViDtGvd~~h~~l~~---------------------------~~~~~~~~~~~----------- 63 (279)
T 3f7m_A 24 YAYDTS-AG-AGACVYVIDTGVEDTHPDFEG---------------------------RAKQIKSYAST----------- 63 (279)
T ss_dssp EEECTT-TT-TTEEEEEEESCCCTTCGGGTT---------------------------CEEEEEECSSS-----------
T ss_pred eeecCC-CC-CCCEEEEEcCCCCCCChhhcc---------------------------ccccccCCCCC-----------
Confidence 456555 79 999999999999999999963 23444444332
Q ss_pred cCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHcC------
Q 004205 215 SFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRDG------ 287 (768)
Q Consensus 215 ~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~g------ 287 (768)
..|.+||||||||||+|+. .||||+|+|+.+|+++..+ +..+++++||+|+++++
T Consensus 64 ----~~d~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~ 125 (279)
T 3f7m_A 64 ----ARDGHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCP 125 (279)
T ss_dssp ----SSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCT
T ss_pred ----CCCCCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCC
Confidence 2278899999999999864 7999999999999998766 78899999999999986
Q ss_pred -CcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC--CCCcccCCCceEEEcccCCCccceeeEEeCCC
Q 004205 288 -VHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN--EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDG 364 (768)
Q Consensus 288 -~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~--~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~ 364 (768)
++|||||||.. ....+..+++++.++|++||+||||+|. ....|+..+++|+|||++
T Consensus 126 ~~~Vin~S~g~~------~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~-------------- 185 (279)
T 3f7m_A 126 RRTVASMSLGGG------YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATD-------------- 185 (279)
T ss_dssp TEEEEEECCCEE------CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC--------------
T ss_pred CCeEEEeCCCcC------ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecC--------------
Confidence 89999999965 3467888888999999999999999998 444588889999999743
Q ss_pred ceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEE
Q 004205 365 ANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGM 444 (768)
Q Consensus 365 ~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~ 444 (768)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 3f7m_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceee
Q 004205 445 ILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTA 524 (768)
Q Consensus 445 i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~A 524 (768)
..+.++.||++||.. ||+|
T Consensus 186 -----------------------------------------------------~~~~~~~~S~~g~~~--------di~A 204 (279)
T 3f7m_A 186 -----------------------------------------------------SNDVRSTFSNYGRVV--------DIFA 204 (279)
T ss_dssp -----------------------------------------------------TTSBBCTTCCBSTTC--------CEEE
T ss_pred -----------------------------------------------------CCCCCCCCCCCCCCC--------eEEE
Confidence 125678999999976 9999
Q ss_pred CCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccc
Q 004205 525 PGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATAL 585 (768)
Q Consensus 525 PG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~ 585 (768)
||++|+++++. +.|..++|||||||+|||++|||+|++|+ ++++||++|++||++.
T Consensus 205 pG~~i~s~~~~----~~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~ 260 (279)
T 3f7m_A 205 PGTSITSTWIG----GRTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKN 260 (279)
T ss_dssp ECSSEEEECGG----GCEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEES
T ss_pred CCCCeEeecCC----CCEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhcccc
Confidence 99999999874 55999999999999999999999999999 9999999999999974
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-46 Score=425.75 Aligned_cols=288 Identities=18% Similarity=0.168 Sum_probs=216.4
Q ss_pred ccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCcccccc
Q 004205 130 GEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEED 209 (768)
Q Consensus 130 ~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~ 209 (768)
.+++..+|+.+++| +||+|||||||||++||+|.+.-. ..+.++|.++..
T Consensus 40 ~i~~~~aw~~g~tG-~gv~VaViDtGvd~~Hpdl~~~~~-------------------------~~~~~d~~~~~~---- 89 (503)
T 2id4_A 40 DINVLDLWYNNITG-AGVVAAIVDDGLDYENEDLKDNFC-------------------------AEGSWDFNDNTN---- 89 (503)
T ss_dssp SCCCHHHHHTTCSC-TTCEEEEEESCCCTTSTTTTTTBC-------------------------GGGCEETTTTBS----
T ss_pred ccChHHHHhcCCCC-CCeEEEEEeCCCCCCChhHhhccc-------------------------ccCcccCCCCCC----
Confidence 35677899999999 999999999999999999974310 001233433211
Q ss_pred ccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHHcCCc
Q 004205 210 IVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVH 289 (768)
Q Consensus 210 ~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~~g~d 289 (768)
+.....|.+||||||||||||...++. .+.||||+|+|+.+|+++.. ++..++++||+||++++ +
T Consensus 90 -----~~~p~~d~~gHGT~vAGiiaa~~~n~~--------~~~GvAp~a~i~~~rv~~~~-~~~~~~~~ai~~a~~~~-~ 154 (503)
T 2id4_A 90 -----LPKPRLSDDYHGTRCAGEIAAKKGNNF--------CGVGVGYNAKISGIRILSGD-ITTEDEAASLIYGLDVN-D 154 (503)
T ss_dssp -----CCCCCSTTTTHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECTTSC-CCHHHHHHHTTTTTTTC-S
T ss_pred -----CCCCCCCCCChHHHHHHHHHhccCCCC--------CcEEECCCCEEEEEEeeCCC-CChHHHHHHHHhHhhcC-C
Confidence 011235788999999999999764332 23899999999999999743 67888999999999998 9
Q ss_pred EEEeccCCCCCCC--CCchhHHHHHHHHhh-----cCCcEEEEeccCCCC-CC--Ccc--cCCCceEEEcccCCCcccee
Q 004205 290 ILSLSLGPEAPQG--DYFSDAISIGSFHAT-----SRGILVVASAGNEGN-EG--SVT--NLAPWMFTIAASSTDRDFTS 357 (768)
Q Consensus 290 VIN~SlG~~~~~~--~~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~-~~--~~~--~~~p~vitVgAs~~~~~~~~ 357 (768)
|||||||....+. ......+..++.++. .+|++||+||||+|. .. ..+ ..++++|+|||++.
T Consensus 155 Iin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~------ 228 (503)
T 2id4_A 155 IYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH------ 228 (503)
T ss_dssp EEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT------
T ss_pred EEEeCCCcCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCC------
Confidence 9999999864211 112345666666665 479999999999997 22 222 25677899987431
Q ss_pred eEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHH
Q 004205 358 EIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVK 437 (768)
Q Consensus 358 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~ 437 (768)
T Consensus 229 -------------------------------------------------------------------------------- 228 (503)
T 2id4_A 229 -------------------------------------------------------------------------------- 228 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCc
Q 004205 438 EAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEI 517 (768)
Q Consensus 438 ~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~ 517 (768)
.+.++.||++||..
T Consensus 229 -------------------------------------------------------------~~~~a~~S~~g~~~----- 242 (503)
T 2id4_A 229 -------------------------------------------------------------KDLHPPYSEGCSAV----- 242 (503)
T ss_dssp -------------------------------------------------------------TSCCCTTCCCCTTE-----
T ss_pred -------------------------------------------------------------CCCcCCcCCCCCcc-----
Confidence 25678999999987
Q ss_pred ccCceee----CCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCC-CCCc
Q 004205 518 LKPDVTA----PGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKN-HKPI 592 (768)
Q Consensus 518 ~KPDI~A----PG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~-g~p~ 592 (768)
|++| ||..|+++..+ +..|..++|||||||||||++|||+|++|+|++++||++|++||++++.. ....
T Consensus 243 ---~~~a~~~gpG~~I~st~~~---~~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~ 316 (503)
T 2id4_A 243 ---MAVTYSSGSGEYIHSSDIN---GRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDW 316 (503)
T ss_dssp ---EEEEECSBTTBCEEEECST---TCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCC
T ss_pred ---eEeecCCCCCCceEeecCC---CCceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCc
Confidence 8887 89999999543 25699999999999999999999999999999999999999999976533 1111
Q ss_pred cCCCCCCCCCCCcccccccCccccCCCCe
Q 004205 593 TVDPKGRRGNAFDYGSGFLNPRKVLSPGL 621 (768)
Q Consensus 593 ~~~~~~~~~~~~~~G~G~vn~~~Al~~~l 621 (768)
... .........||+|+||+++|++...
T Consensus 317 ~~~-~~g~~~~~~~G~G~vda~~Av~~a~ 344 (503)
T 2id4_A 317 RDS-AMGKKYSHRYGFGKIDAHKLIEMSK 344 (503)
T ss_dssp EEC-SSSSEEBTTTBTCBCCHHHHHHHHT
T ss_pred eec-CCCCccCcccCCcEecHHHHHHHHh
Confidence 111 1122345689999999999998543
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=422.25 Aligned_cols=315 Identities=18% Similarity=0.208 Sum_probs=203.4
Q ss_pred cCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccc
Q 004205 131 EESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDI 210 (768)
Q Consensus 131 ~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~ 210 (768)
+++..+|.++++| +||+|||||||||++||||.+.- ..+.+++.++..
T Consensus 57 inv~~aw~~g~tG-~GV~VaViDtGid~~HpDL~~n~--------------------------~~~~~~~~~~~~----- 104 (600)
T 3hjr_A 57 LNLWWAHRTGVLG-QGVNVAVVDDGLAIAHPDLADNV--------------------------RPGSKNVVTGSD----- 104 (600)
T ss_dssp CCCHHHHHHTCSC-TTCEEEEESSCCCTTCTTTGGGB--------------------------CSCCBCTTTSSS-----
T ss_pred cCHHHHHHcCCCC-CCeEEEEEcCCCCCCChhHhhcc--------------------------ccCcceeecCCC-----
Confidence 5677899999999 99999999999999999996421 112223332211
Q ss_pred cccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHH-HHHHHcCC
Q 004205 211 VETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAF-DDAIRDGV 288 (768)
Q Consensus 211 ~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai-~~a~~~g~ 288 (768)
+.....|.+||||||||||||.. ++ .| +.||||+|+|+.+|++++.+ +..++++.|+ +++..+++
T Consensus 105 ----dp~p~~~~~gHGThVAGiIAa~~-n~---~g-----~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~ 171 (600)
T 3hjr_A 105 ----DPTPTDPDTAHGTSVSGIIAAVD-NA---IG-----TKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDN 171 (600)
T ss_dssp ----CCCCCSTTCCHHHHHHHHHHCCS-SS---SS-----CCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTC
T ss_pred ----CCCCCCCCCChHHHHHHHHhEeC-CC---CC-----cEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCC
Confidence 11223457899999999999853 11 22 38999999999999998765 6677777776 67888999
Q ss_pred cEEEeccCCCCCCCCCc----hhHHHHHHHHh--hcCCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeEEe
Q 004205 289 HILSLSLGPEAPQGDYF----SDAISIGSFHA--TSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVL 361 (768)
Q Consensus 289 dVIN~SlG~~~~~~~~~----~~~~~~a~~~a--~~~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~~~ 361 (768)
+|||||||......... ...+..++..+ ..+|+++|+||||.+. .... . +.+.+..
T Consensus 172 ~I~n~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~-----~-~~~~~~g----------- 234 (600)
T 3hjr_A 172 RVFNQSYGMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAG-----G-YVLNRTG----------- 234 (600)
T ss_dssp SEEEECCCCCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEET-----T-EEEEEES-----------
T ss_pred CEEecccCccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCcccccccc-----c-cccccCC-----------
Confidence 99999999764211111 12233333222 3689999999999774 1000 0 0000000
Q ss_pred CCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCc
Q 004205 362 GDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGG 441 (768)
Q Consensus 362 ~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga 441 (768)
++ .......|.-.. +......|.+-
T Consensus 235 -~~------------------------------~~~~~~~~~~d~--~~~~~~~IsVg---------------------- 259 (600)
T 3hjr_A 235 -NG------------------------------PKLPFENSNLDP--SNSNFWNLVVS---------------------- 259 (600)
T ss_dssp -SC------------------------------CCCCSSBTTSSG--GGGSSSEEEEE----------------------
T ss_pred -CC------------------------------CCCCcccccccC--ccccCcceEEe----------------------
Confidence 00 000000010000 00000011111
Q ss_pred eEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCc
Q 004205 442 VGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPD 521 (768)
Q Consensus 442 ~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPD 521 (768)
.....+.++.||++|+.. +
T Consensus 260 -----------------------------------------------------A~~~~g~~a~yS~~G~~v--------~ 278 (600)
T 3hjr_A 260 -----------------------------------------------------ALNADGVRSSYSSVGSNI--------F 278 (600)
T ss_dssp -----------------------------------------------------EECTTSSBCTTCCBCTTC--------C
T ss_pred -----------------------------------------------------eecCCCCEeecccCCcce--------e
Confidence 123447789999999988 8
Q ss_pred eeeCCce-------EEEE-ecCC----------------------CCCcceEEeccccchhHHHHHHHHHHHHhCCCCCH
Q 004205 522 VTAPGLN-------IIAA-WSPA----------------------VGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSP 571 (768)
Q Consensus 522 I~APG~~-------I~Sa-~~~~----------------------~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp 571 (768)
++|||.. +..+ .+.. ...+.|..++|||||||||||++|||+|++|+||+
T Consensus 279 ~~apg~~~~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~lt~ 358 (600)
T 3hjr_A 279 LSATGGEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSV 358 (600)
T ss_dssp EEEECCSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred eccCCCCCCCCCcceeeecCCCccccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCCCCH
Confidence 9999875 2222 2110 12346889999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCccCC-------------------CCCCCCCCCcccccccCccccCCCCeee
Q 004205 572 SAIKSAIMTTATALDKNHKPITVD-------------------PKGRRGNAFDYGSGFLNPRKVLSPGLIY 623 (768)
Q Consensus 572 ~~ik~~L~~TA~~~~~~g~p~~~~-------------------~~~~~~~~~~~G~G~vn~~~Al~~~l~~ 623 (768)
+|||++|++||++++....|+... ..........||+|++|+.+|++.+..|
T Consensus 359 ~~v~~~L~~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yGfG~vDA~~aV~~A~~w 429 (600)
T 3hjr_A 359 RDLRDLLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALELAANH 429 (600)
T ss_dssp HHHHHHHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHHHHHHHHTTC
T ss_pred HHHHHHHHhhCccCCCCCCcccccccccccccccccccCCcccccCCceEccccCCceecHHHHHHHhhcC
Confidence 999999999999988766553211 0112223567999999999998754333
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.9e-25 Score=250.39 Aligned_cols=97 Identities=26% Similarity=0.347 Sum_probs=78.2
Q ss_pred ceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHH---cCCcEEEeccCCCCCC-CCCchhHHHHHHHHhhcCCcEEEEe
Q 004205 251 ARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIR---DGVHILSLSLGPEAPQ-GDYFSDAISIGSFHATSRGILVVAS 326 (768)
Q Consensus 251 ~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~---~g~dVIN~SlG~~~~~-~~~~~~~~~~a~~~a~~~Gi~vV~A 326 (768)
+.||||+|+|+.|++. ...++++++|+||++ ++++|||||||..... .......++.++.+|..+||+||+|
T Consensus 274 ~~gvAp~a~i~~~~~~----~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi~vv~A 349 (552)
T 1t1e_A 274 AGALAPGAKIAVYFAP----NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAA 349 (552)
T ss_dssp HHHHCTTSEEEEEECC----SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhccCCCCeEEEEEcC----CCCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 4899999999999984 356789999999998 7899999999987411 0012346777788888999999999
Q ss_pred ccCCCC-C--------CCcccCCCceEEEcccCC
Q 004205 327 AGNEGN-E--------GSVTNLAPWMFTIAASST 351 (768)
Q Consensus 327 AGN~g~-~--------~~~~~~~p~vitVgAs~~ 351 (768)
|||+|. . ...|+.+|++++||+++.
T Consensus 350 sGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 350 AGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp CCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred cCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 999996 3 245678999999999763
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-22 Score=216.55 Aligned_cols=100 Identities=19% Similarity=0.209 Sum_probs=80.5
Q ss_pred eeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHH-cCCcEEEeccCCCCCC--CCCchhHHHHHHHHhhcCCcEEEEecc
Q 004205 252 RGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIR-DGVHILSLSLGPEAPQ--GDYFSDAISIGSFHATSRGILVVASAG 328 (768)
Q Consensus 252 ~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVIN~SlG~~~~~--~~~~~~~~~~a~~~a~~~Gi~vV~AAG 328 (768)
..+||+|+++.|++.+..++..++++++|+||++ ++++|||||||..... .......++.++.+|..+||+||+|||
T Consensus 90 g~~aP~a~~~~~~~~~~~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~AsG 169 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSG 169 (372)
T ss_dssp HHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hhcCCCCcEEEEEeCCCCCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 4578999999999987655777899999999998 8999999999976410 011235677888888899999999999
Q ss_pred CCCC-C-C------------CcccCCCceEEEcccCC
Q 004205 329 NEGN-E-G------------SVTNLAPWMFTIAASST 351 (768)
Q Consensus 329 N~g~-~-~------------~~~~~~p~vitVgAs~~ 351 (768)
|+|. . . ..|+.+|++++||+++.
T Consensus 170 d~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~ 206 (372)
T 1ga6_A 170 DEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 206 (372)
T ss_dssp SBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred CCCCccccccCccCCccCCcCCCCCCCCeEEEEeeec
Confidence 9997 2 1 45678999999999764
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=99.02 E-value=2.6e-10 Score=102.20 Aligned_cols=81 Identities=14% Similarity=0.082 Sum_probs=67.6
Q ss_pred cCCCCcEEEEEeCCCCCCCCchhhHhHHHHHHHHhcCcccccccceEEEecceeeEEEEEeCHHHHHHHhcCCCeEEEEe
Q 004205 32 ICFSAKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFP 111 (768)
Q Consensus 32 ~~~~~~~yiV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~V~~ 111 (768)
....+++|||+|++... ......|.+|+.+++ .+ +....++.|+|++.|+||+++++++++++|+++|+|.+|||
T Consensus 33 ~~~ip~~YIV~lk~~~~---~~~~~~h~~~l~s~~-~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~ 107 (114)
T 2w2n_P 33 PWRLPGTYVVVLKEETH---LSQSERTARRLQAQA-AR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEE 107 (114)
T ss_dssp GGEEEEEEEEEECTTCC---HHHHHHHHHHHHHHH-HH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEE
T ss_pred ccCCCCcEEEEECCCCC---HHHHHHHHHHHHHHh-hh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEe
Confidence 34568999999998752 225668899999987 32 23567899999999999999999999999999999999999
Q ss_pred cceecc
Q 004205 112 NMKRRL 117 (768)
Q Consensus 112 ~~~~~~ 117 (768)
|+.++.
T Consensus 108 D~~v~~ 113 (114)
T 2w2n_P 108 DSSVFA 113 (114)
T ss_dssp EEEEEE
T ss_pred CceEec
Confidence 998764
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=123.96 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=63.8
Q ss_pred eeccCCCcEeeeeeecCCCCCHHHHHHHHHHHH--HcCCcEEEeccCCCCCC-CCCchhHHHHHHHHhhcCCcEEEEecc
Q 004205 252 RGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAI--RDGVHILSLSLGPEAPQ-GDYFSDAISIGSFHATSRGILVVASAG 328 (768)
Q Consensus 252 ~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~--~~g~dVIN~SlG~~~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAG 328 (768)
.+++++..++.|-..+. ....+.++..+++.. .+-++|||+|||..... +..+...+..++.++..+||.|++|+|
T Consensus 262 ~a~~~~i~~~~~~~~g~-~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~ASG 340 (544)
T 3edy_A 262 MSAGANISTWVYSSPGR-HEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASG 340 (544)
T ss_dssp HHHSTTSEEEEECCCSC-CTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hccCCCceEEEEecCCc-ccccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 34455555555543211 111233444444433 24589999999987511 111234566777788899999999999
Q ss_pred CCCC-CC----------CcccCCCceEEEcccCC
Q 004205 329 NEGN-EG----------SVTNLAPWMFTIAASST 351 (768)
Q Consensus 329 N~g~-~~----------~~~~~~p~vitVgAs~~ 351 (768)
|+|. +. ..|+.+||+++||+++.
T Consensus 341 D~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 341 DSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp SSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred CCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 9997 42 45788999999999764
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.92 E-value=2.8e-09 Score=89.33 Aligned_cols=75 Identities=15% Similarity=0.129 Sum_probs=57.1
Q ss_pred CCCCcEEEEEeCCCCCCCCchhhHhHHHHHHHHhcCcccccccceEEEecceeeEEEEEeCHHHHHHHhcCCCeEEEEec
Q 004205 33 CFSAKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPN 112 (768)
Q Consensus 33 ~~~~~~yiV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~V~~~ 112 (768)
...+++|||+||+.... . . .+. +++ ...+.++.++|.+ |+||+++++++++++|+++|+|.+||||
T Consensus 5 ~~i~~~YIV~~k~~~~~--~-~--~~~----~~~----~~~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D 70 (80)
T 3cnq_P 5 SNGEKKYIVGFKQGFKS--C-A--KKE----DVI----SEKGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEED 70 (80)
T ss_dssp ---CCEEEEEECTTCCS--H-H--HHH----HHH----HTTTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEEC
T ss_pred ccCCCCEEEEECCCCCh--H-H--HHH----HHH----HHcCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeC
Confidence 45689999999987532 1 1 122 222 1234689999998 9999999999999999999999999999
Q ss_pred ceeccCCCC
Q 004205 113 MKRRLHTTH 121 (768)
Q Consensus 113 ~~~~~~~~~ 121 (768)
+.++++++.
T Consensus 71 ~~v~~~tt~ 79 (80)
T 3cnq_P 71 KLYRALSAT 79 (80)
T ss_dssp CEEEECCC-
T ss_pred cEEEEeeec
Confidence 999887654
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-08 Score=92.54 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=62.7
Q ss_pred CCCCcEEEEEeCCCCCCCCchhhHhHHHHHHHHhcCcccccccceEEEecceeeEEEEEeCHHHHHHHhcCCCeEEEEec
Q 004205 33 CFSAKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPN 112 (768)
Q Consensus 33 ~~~~~~yiV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~V~~~ 112 (768)
...+++|||+||+... ......|.+++.++.+ ++....++.|+|++.|+||+++++++++++|+++|+|.+|+++
T Consensus 44 ~~Ip~~YIV~~K~~~~---~~~~~~~~~~l~~~~~--~r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D 118 (124)
T 2qtw_A 44 WRLPGTYVVVLKEETH---LSQSERTARRLQAQAA--RRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEED 118 (124)
T ss_dssp GEEEEEEEEEECTTCC---HHHHHHHHHHHHHHHH--HTTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEE
T ss_pred cCCCCCEEEEECCCCC---HHHHHHHHHHHHHHHh--hcccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeC
Confidence 4468999999998752 2244556666665441 1114568999999999999999999999999999999999999
Q ss_pred ceecc
Q 004205 113 MKRRL 117 (768)
Q Consensus 113 ~~~~~ 117 (768)
+.++.
T Consensus 119 ~~v~a 123 (124)
T 2qtw_A 119 SSVFA 123 (124)
T ss_dssp EEEEE
T ss_pred ceEec
Confidence 88764
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.73 E-value=5.4e-08 Score=80.40 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=57.6
Q ss_pred CcEEEEEeCCCCCCCCchhhHhHHHHHHHHhcCcccccccceEEEe-cceeeEEEEEeCHHHHHHHhcC--CCeEEEEec
Q 004205 36 AKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSY-KHGFRGFAAKLTDQQASQIAQM--PGVVSVFPN 112 (768)
Q Consensus 36 ~~~yiV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y-~~~~~g~s~~~~~~~~~~L~~~--p~V~~V~~~ 112 (768)
.++|||+||+.. +....+.|.++++... .++.+.| ...|+||++.++++++++|+++ |.|.+||+|
T Consensus 2 ~~sYIV~lk~~~---~~~~~~~~~~~~~~~g--------g~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D 70 (76)
T 1v5i_B 2 AGKFIVIFKNDV---SEDKIRETKDEVIAEG--------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED 70 (76)
T ss_dssp CEEEEEEECTTC---CHHHHHHHHHHHHHHT--------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred CceEEEEECCCC---CHHHHHHHHHHHHhhC--------CceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCC
Confidence 378999999875 2234556666666543 4688999 4799999999999999999999 889999999
Q ss_pred ceecc
Q 004205 113 MKRRL 117 (768)
Q Consensus 113 ~~~~~ 117 (768)
+.++.
T Consensus 71 ~~v~~ 75 (76)
T 1v5i_B 71 HVAHA 75 (76)
T ss_dssp CEEEC
T ss_pred cEEeC
Confidence 98764
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.1e-07 Score=89.28 Aligned_cols=91 Identities=18% Similarity=0.206 Sum_probs=73.4
Q ss_pred cCCccCcCCCCCCC-------CCCeEEEEeecCCCc-hhHHHHHHHHHHcCceEEEEEcCCC-CC----CC--ccceeeE
Q 004205 398 QSSYCLESSLNSTK-------ARGKVLVCRHAESST-ESKLRKSMVVKEAGGVGMILVDEPG-KD----VA--IPFVIPS 462 (768)
Q Consensus 398 ~~~~c~~~~~~~~~-------~~gkivl~~~~~~g~-~~~~~k~~~~~~~Ga~g~i~~n~~~-~~----~~--~~~~~p~ 462 (768)
....|.+..+.... .+|||+|++ ||+ |+|.+|+.+++++||.++|+||+.. +. +. ....+|+
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~---RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPs 158 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQ---RGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVA 158 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEE---SCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEE
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEE---CCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeE
Confidence 45789886643222 479999999 688 9999999999999999999999852 21 22 2346999
Q ss_pred EEechhhHHHHHHHHhccCccEEEEecCe
Q 004205 463 AVVGKKTGNKILSYISHTSKAISKIFPAK 491 (768)
Q Consensus 463 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 491 (768)
++|++.+|+.|++++.++...+++|....
T Consensus 159 v~Is~~~G~~L~~~L~~G~~Vtvti~vg~ 187 (194)
T 3icu_A 159 IMIGNLKGTKILQSIQRGIQVTMVIEVGK 187 (194)
T ss_dssp EEECHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred EEECHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 99999999999999999988888877654
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0002 Score=56.88 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=50.4
Q ss_pred cEEEEEeCCCCCCCCchhhHhHHHHHHHHhcCcccccccceEEEecceeeEEEEEeCHHHHHHHhcCCCeEEEEecceec
Q 004205 37 KVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKRR 116 (768)
Q Consensus 37 ~~yiV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~V~~~~~~~ 116 (768)
.+|||.|++.... .+.. ...+.++.++|. .++++++++|++.++.|+++|+|++|++|...+
T Consensus 2 ~~~IV~f~~~~~~-------------~~~i----~~~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 2 IRVIVSVDKAKFN-------------PHEV----LGIGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp EEEEEEECGGGCC-------------GGGG----GGGTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred eeEEEEEcCcchh-------------HHHH----HHCCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 5899999875210 0112 456789999997 899999999999999999999999999998765
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0075 Score=66.48 Aligned_cols=71 Identities=11% Similarity=0.207 Sum_probs=59.0
Q ss_pred CCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCC----C--ccceeeEEEechhhHHHHHHHHh
Q 004205 405 SSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDV----A--IPFVIPSAVVGKKTGNKILSYIS 478 (768)
Q Consensus 405 ~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~----~--~~~~~p~~~i~~~~g~~l~~~~~ 478 (768)
.++...+++|||+|+. +|.|.+.+|..+++++||.|+|++++..... . ....+|...++.++++.|+.++.
T Consensus 106 ~D~~~~dv~GkIvlv~---~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 106 ADVAGKDLNGKIALIQ---RGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp TTTTTSCCTTSEEEEE---CCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred hhcCCCCcCceEEEEe---CCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 3444558999999999 6789999999999999999999999865431 1 23568999999999999999984
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.043 Score=49.11 Aligned_cols=75 Identities=19% Similarity=0.229 Sum_probs=55.6
Q ss_pred CccEEEEEEEEecCCCceeEEEEEeCCCceEEEEecCEEEEcCCCeEEEEEEEEEecCCCCceEEEEEEEE-cCceEEEE
Q 004205 675 KGNFSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLTSPPKGYGFGYLSWK-NGKLRVTS 753 (768)
Q Consensus 675 ~~~~t~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~i~~~-~~~~~v~~ 753 (768)
+...+.+++|+|.|+....|+..... -++++|..-++ ++||++.++|+|.+.. .+.+++.|.+. +++..+.+
T Consensus 40 ~~~~~~~~~l~N~g~~~~~f~~~~~~----~F~i~P~~g~L-~pg~~~~i~V~F~P~~--~g~~~~~l~v~~~~g~~~~v 112 (122)
T 2ys4_A 40 KYSTQKILLVRNIGNKNAVFHIKTCR----PFSIEPAIGTL-NVGESMQLEVEFEPQS--VGDHSGRLIVCYDTGEKVFV 112 (122)
T ss_dssp SSCEEEEEEEECCSSSCEEEEEECCT----TEEEESSEEEE-CTTCEEEEEEEECCSS--SBCCCCBCEEEESSSCEECC
T ss_pred CCeEEEEEEEEECCCCCEEEEEecCC----CeEEECCcCEE-CCCCEEEEEEEEEcCC--CccEEEEEEEEECCCCEEEE
Confidence 56778889999999988888877543 27788999989 7899999999998753 34466666655 44445555
Q ss_pred EEE
Q 004205 754 PLV 756 (768)
Q Consensus 754 P~~ 756 (768)
++.
T Consensus 113 ~L~ 115 (122)
T 2ys4_A 113 SLY 115 (122)
T ss_dssp EEC
T ss_pred EEE
Confidence 543
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.072 Score=58.97 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=57.6
Q ss_pred CCCCCCCeEEEEeecCCCch---------hHHHH----HHHHHHcCceEEEEEcCCCCC--------CC---ccceeeEE
Q 004205 408 NSTKARGKVLVCRHAESSTE---------SKLRK----SMVVKEAGGVGMILVDEPGKD--------VA---IPFVIPSA 463 (768)
Q Consensus 408 ~~~~~~gkivl~~~~~~g~~---------~~~~k----~~~~~~~Ga~g~i~~n~~~~~--------~~---~~~~~p~~ 463 (768)
...+++|||||+.+ +.| .+..| ..++.++||.|+|++++.... .. ....+|++
T Consensus 123 ~~~dvkGKIVlv~~---~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~ 199 (444)
T 3iib_A 123 EAGSLNDKIAFIDA---KTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAA 199 (444)
T ss_dssp CTTTTTTCEEEECC---CCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEE
T ss_pred cccccCccEEEEeC---CCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeE
Confidence 35689999999985 444 24444 457899999999999865432 11 12468999
Q ss_pred EechhhHHHHHHHHhccCccEEEEec
Q 004205 464 VVGKKTGNKILSYISHTSKAISKIFP 489 (768)
Q Consensus 464 ~i~~~~g~~l~~~~~~~~~~~~~i~~ 489 (768)
.|+.++++.|+..+..+....+++..
T Consensus 200 ~Is~~da~~L~~~l~~g~~~~v~l~~ 225 (444)
T 3iib_A 200 AISNPDADLINAMLKRDKEVVISLEL 225 (444)
T ss_dssp EECHHHHHHHHHHHTTTCCCEEEEEE
T ss_pred EecHHHHHHHHHHHhCCCCeEEEEEE
Confidence 99999999999999876555555543
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=94.59 E-value=0.061 Score=62.06 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=54.1
Q ss_pred CCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC-C---------------C------------------
Q 004205 410 TKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD-V---------------A------------------ 455 (768)
Q Consensus 410 ~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~-~---------------~------------------ 455 (768)
.+++|||+|+. +|.|.+.+|..+++++||.|+|+|++.... . .
T Consensus 128 vdv~GkIvlv~---~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~ 204 (640)
T 3kas_A 128 TPVNGSIVIVR---AGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPS 204 (640)
T ss_dssp SCCTTSEEEEE---SCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCC
T ss_pred cccCCcEEEEe---cCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCcccccccccccc
Confidence 58999999999 678999999999999999999999875321 0 0
Q ss_pred ---ccceeeEEEechhhHHHHHHHHh
Q 004205 456 ---IPFVIPSAVVGKKTGNKILSYIS 478 (768)
Q Consensus 456 ---~~~~~p~~~i~~~~g~~l~~~~~ 478 (768)
....+|+..|+.++++.|+..+.
T Consensus 205 ~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 205 RSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp SSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred cccCCCCCCEEecCHHHHHHHHHHcc
Confidence 01258999999999999988764
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=94.52 E-value=0.034 Score=64.82 Aligned_cols=68 Identities=24% Similarity=0.379 Sum_probs=55.1
Q ss_pred CCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCC-----C------------------CC------Cc---
Q 004205 409 STKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPG-----K------------------DV------AI--- 456 (768)
Q Consensus 409 ~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~-----~------------------~~------~~--- 456 (768)
..+++|||+|++ +|.|.+.+|+.+++++||.|+|+|++.. + .. .+
T Consensus 150 ~~~v~GkIvlv~---~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~T 226 (707)
T 3fed_A 150 GINCTGKIVIAR---YGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLT 226 (707)
T ss_dssp CCCCTTCEEEEE---CCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTC
T ss_pred CCCCCCeEEEEE---CCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCC
Confidence 568999999999 6789999999999999999999998621 0 00 00
Q ss_pred -------------------cceeeEEEechhhHHHHHHHHhc
Q 004205 457 -------------------PFVIPSAVVGKKTGNKILSYISH 479 (768)
Q Consensus 457 -------------------~~~~p~~~i~~~~g~~l~~~~~~ 479 (768)
.-.||+..|+..+++.|+..+..
T Consensus 227 PG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 227 PGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp TTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred CCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 13589999999999999998754
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.53 Score=43.03 Aligned_cols=87 Identities=7% Similarity=-0.004 Sum_probs=63.3
Q ss_pred CccEEEEEEEEecCCCceeEEEEEeCC----CceEEEEecCEEEEcCCCeEEEEEEEEEecC-----CC--CceEEEEEE
Q 004205 675 KGNFSVTRSVTNVGKPRSIYKAVVSSP----VGVTVTVAPERLIFNSYGQKINFTVHFKLTS-----PP--KGYGFGYLS 743 (768)
Q Consensus 675 ~~~~t~~~tv~N~~~~~~ty~~~~~~~----~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~-----~~--~~~~~G~i~ 743 (768)
....+-++||+|.|.-..+|++..... ..--++++|..-++ .+|++++++|++.++. ++ ..-++--|+
T Consensus 42 ~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLv 120 (140)
T 3qbt_B 42 RQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGEDKIEDILV 120 (140)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEE
T ss_pred eeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEEccCcccccccchhhhheeEE
Confidence 345677789999999999999974321 11236778999989 7899999999998642 11 123456666
Q ss_pred EE-cCceEEEEEEEEEEecC
Q 004205 744 WK-NGKLRVTSPLVVQVAPS 762 (768)
Q Consensus 744 ~~-~~~~~v~~P~~~~~~~~ 762 (768)
+. .++....+|+...+.||
T Consensus 121 L~Ve~G~d~fI~v~g~~~ps 140 (140)
T 3qbt_B 121 LHLDRGKDYFLTISGNYLPS 140 (140)
T ss_dssp EEETTSCEEEEEEEEEECCC
T ss_pred EEeecCCcEEEEEeccccCC
Confidence 65 56678899999988775
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=90.65 E-value=0.12 Score=57.05 Aligned_cols=47 Identities=21% Similarity=0.336 Sum_probs=33.0
Q ss_pred CCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCCCCcceEEeccccc
Q 004205 496 SEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSM 550 (768)
Q Consensus 496 ~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSm 550 (768)
....+.++.||++|+.. ||+|||++|+++++..++......+.|+||
T Consensus 180 ~~~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~g~g~~~~~~~~G~s~ 226 (441)
T 1y9z_A 180 VDSNLDHAAFSQYTDQV--------EISGPGEAILSTVTVGEGRLADITIGGQSY 226 (441)
T ss_dssp ECTTCCBCTTSCCCTTE--------EEEEECSSEEEECSTTCEEEEEEEETTEEC
T ss_pred ECCCCCCCccccCCCce--------EEEeccCCeeccccCCCcccceeecccccc
Confidence 34557899999999876 999999999999874222112234555554
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.40 E-value=1.4 Score=38.18 Aligned_cols=81 Identities=11% Similarity=0.060 Sum_probs=54.5
Q ss_pred CccEEEEEEEEecCCCceeEEEEEeC-CCceEEEEecCEEEEcCCCeEEEEEEEEEecCCCCceEEEEEEEEc-C-ceEE
Q 004205 675 KGNFSVTRSVTNVGKPRSIYKAVVSS-PVGVTVTVAPERLIFNSYGQKINFTVHFKLTSPPKGYGFGYLSWKN-G-KLRV 751 (768)
Q Consensus 675 ~~~~t~~~tv~N~~~~~~ty~~~~~~-~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~i~~~~-~-~~~v 751 (768)
....+.+++++|.|+....|+..... ..+..++++|..-.+ ++|++++|+|+|.+... +.+.=.|++.- + ...+
T Consensus 25 g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~~~~--g~f~~~i~v~~~g~~~~~ 101 (112)
T 2e6j_A 25 GSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSSIIL--GNFEEEFLVNVNGSPEPV 101 (112)
T ss_dssp SCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECCCCC--EEEEEEECEEESSCSSCC
T ss_pred CCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEECCCc--ceEEEEEEEEECCCCceE
Confidence 44577789999999999999984211 112347778999888 68999999999987543 34445566653 2 2334
Q ss_pred EEEEEEE
Q 004205 752 TSPLVVQ 758 (768)
Q Consensus 752 ~~P~~~~ 758 (768)
++-+-..
T Consensus 102 ~L~i~G~ 108 (112)
T 2e6j_A 102 KLTIRGC 108 (112)
T ss_dssp CEEEEEE
T ss_pred EEEEEEE
Confidence 4444443
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=85.02 E-value=5.2 Score=35.08 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=42.9
Q ss_pred cEEEEEEEEecCCCceeEEEEEeCCCceEEEEecCEEEEcCCCeEEEEEEEEEec
Q 004205 677 NFSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLT 731 (768)
Q Consensus 677 ~~t~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~ 731 (768)
.-.+++.|.|......+|.+++...+|+++. .+..+++ ++|+..++.|.+..+
T Consensus 32 ~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v-~~g~~~~~~v~v~~~ 84 (118)
T 2r39_A 32 ENTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQV-EPGEVLNLPMSLGAD 84 (118)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEE-CTTCEEEEEEEEEEC
T ss_pred EEEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEE-CCCCEEEEEEEEEEC
Confidence 3567799999999999999999887776553 2556777 789999999999875
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=84.89 E-value=0.43 Score=58.80 Aligned_cols=24 Identities=13% Similarity=0.418 Sum_probs=21.8
Q ss_pred CCCCCcceEEEEEeCCCCCCCCCCC
Q 004205 140 STKNQVNIIVGFIDTGIWPESPSFS 164 (768)
Q Consensus 140 ~~~Gg~GV~VgVIDtGid~~Hp~f~ 164 (768)
.+.| +||+|||+|||||+.+|.|.
T Consensus 32 ~ydG-rgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 32 EYDG-RDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TCSS-TTCEEEEEESCCCTTSTTSS
T ss_pred CCCC-CccEEEEEeCCCCCCCCcce
Confidence 4678 99999999999999999994
|
| >3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A | Back alignment and structure |
|---|
Probab=84.85 E-value=6.5 Score=41.92 Aligned_cols=91 Identities=8% Similarity=0.017 Sum_probs=66.2
Q ss_pred CccEEEEEEEEecCCCceeEEEEEeCCCceE----EEEecCEEEEcCCCeEEEEEEEEEecCC-----C--CceEEEEEE
Q 004205 675 KGNFSVTRSVTNVGKPRSIYKAVVSSPVGVT----VTVAPERLIFNSYGQKINFTVHFKLTSP-----P--KGYGFGYLS 743 (768)
Q Consensus 675 ~~~~t~~~tv~N~~~~~~ty~~~~~~~~g~~----v~~~p~~~~~~~~~~~~~~~vt~~~~~~-----~--~~~~~G~i~ 743 (768)
....+-++||+|.|.-..+|++.-....... ++++|..-++ .+|++++++|++.++.. . ..-.+--|+
T Consensus 45 ~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l-~Pge~~~i~l~~~v~~~~~~~ln~g~~~l~diLv 123 (366)
T 3qis_A 45 RQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGEDKIEDILV 123 (366)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCTTTHHHHHHTSSCSCEEEE
T ss_pred CCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEE-CCCCEEEEEEEEEECHHHHHHHhcCccccceEEE
Confidence 3566777899999999999999654322222 7788999888 78999999999987531 1 223455566
Q ss_pred EE-cCceEEEEEEEEEEecCccCc
Q 004205 744 WK-NGKLRVTSPLVVQVAPSDMGL 766 (768)
Q Consensus 744 ~~-~~~~~v~~P~~~~~~~~~~~~ 766 (768)
+. .++...-+|+-+.+.++-|+.
T Consensus 124 L~ve~G~d~FI~v~~~~~~s~FG~ 147 (366)
T 3qis_A 124 LHLDRGKDYFLTISGNYLPSCFGT 147 (366)
T ss_dssp EEETTSCEEEEEEEEEECCCSTTS
T ss_pred EEEeCCCcEEEEeccccCCccccC
Confidence 65 456677889988888887764
|
| >2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=82.77 E-value=6.5 Score=38.58 Aligned_cols=84 Identities=11% Similarity=0.001 Sum_probs=57.1
Q ss_pred ccEEEEEEEEecCCCceeEEEEEeCCCceEEEEecCEEEEcCCCeEEEEEEEEEecCCC-CceEEEEEEEEc----C-c-
Q 004205 676 GNFSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLTSPP-KGYGFGYLSWKN----G-K- 748 (768)
Q Consensus 676 ~~~t~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~-~~~~~G~i~~~~----~-~- 748 (768)
...+.+++++|.|+.+.+++... .|.-.++ .+..-.+ ++|++.+++|+++..... -+...+.|++.. + .
T Consensus 19 ~~~~~~~~i~N~g~~pl~i~~~~-~p~~~~~--~~~~~~I-~PG~~g~I~vt~~~~~~~~~G~~~~~i~v~~~~~~~~~~ 94 (220)
T 2qsv_A 19 DEGVVRLVVNNTDESDLQVAVVS-LPSFVSL--DDRAFRL-QAREPRELNLSLAVPRNMPPGMKDEPLVLEVTSPETGKK 94 (220)
T ss_dssp CCCEEEEEEEECSSSCEEEEEEE-CCTTEEC--SCCEEEE-CSSSCEEEEEEECCCTTCCSEEEEEEEEEEEECTTTCCE
T ss_pred CcceEEEEEEeCCCCceEEEecc-CCCceEe--eeCccee-CCCCceEEEEEEcchhcccCCceeeEEEEEEEcCCCCcc
Confidence 34566789999999998888753 3554444 3333445 789999999999876543 356677777763 2 2
Q ss_pred eEEEEEEEEEEecCc
Q 004205 749 LRVTSPLVVQVAPSD 763 (768)
Q Consensus 749 ~~v~~P~~~~~~~~~ 763 (768)
...++|+.....+.+
T Consensus 95 ~~~~i~v~g~v~p~~ 109 (220)
T 2qsv_A 95 AVDSVMVSLPLVDNF 109 (220)
T ss_dssp EEEEEEEEEEECCCG
T ss_pred cccEEEEEEEEcccc
Confidence 245888887776654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 768 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 1e-35 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 6e-14 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 1e-12 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 9e-06 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 2e-12 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 2e-12 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 7e-12 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 3e-04 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 4e-11 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 5e-11 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 5e-09 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 5e-08 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 9e-07 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 3e-06 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 7e-04 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 1e-05 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 138 bits (347), Expect = 1e-35
Identities = 76/493 (15%), Positives = 147/493 (29%), Gaps = 109/493 (22%)
Query: 146 NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYE 205
N + ID+G + V G
Sbjct: 23 NRTICIIDSGYDRSHNDLNA--------------------------NNVTGT-------- 48
Query: 206 AEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKT 265
+ T ++ P +++ HG+H A T A G G P ++
Sbjct: 49 ---NNSGTGNWYQPGNNNAHGTHVAGTIAAIA---------NNEGVVGVMPNQNANIHIV 96
Query: 266 CWDSGCYDVDLLAAFDDAI----RDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGI 321
+ + G +++++SLG + + G+
Sbjct: 97 KVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGG-----SGSTTTERNALNTHYNNGV 151
Query: 322 LVVASAGNEGNEG-SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNAS 380
L++A+AGN G+ S + ++AA ++ D + D +G ++
Sbjct: 152 LLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILST--- 208
Query: 381 ARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAG 440
T + + + V+ S S + G
Sbjct: 209 -------------VTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATG 255
Query: 441 GVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAP 500
+ V+ + ++ + + + +I K +
Sbjct: 256 ALAECTVNG----------TSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKG 305
Query: 501 RVAAFSSKGPNALNPEIL--KPDVTAPGLNIIAAWSPAV-------------GKMQFNIL 545
+ +S P NP ++ D+T P +++ A A+ G +
Sbjct: 306 IIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYY 365
Query: 546 SGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFD 605
+GTSMA PHV+G+ATL+ + HP S S +++A+ TA D G
Sbjct: 366 NGTSMATPHVSGVATLVWSYHPECSASQVRAALNATA------------DDLSVAGRDNQ 413
Query: 606 YGSGFLNPRKVLS 618
G G +N +
Sbjct: 414 TGYGMINAVAAKA 426
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 71.1 bits (172), Expect = 6e-14
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 519 KPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAI 578
+++APG ++ + W +N +SGTSMA PHV+G+A I A +PS S + ++S +
Sbjct: 224 DIEISAPGSSVYSTWYN----GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNL 279
Query: 579 MTTATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
A ++D I G+ + G GF
Sbjct: 280 QERAKSVD-----IKGGYGAAIGDDYASGFGFAR 308
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 68.9 bits (167), Expect = 1e-12
Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 26/127 (20%)
Query: 520 PDVTAPGLNIIAAW--------------SPAVGKMQFNILSGTSMACPHVTGIATLIKAV 565
V APG+ I++ PA ++ GTSMA PHVTG+ ++
Sbjct: 338 VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 566 HPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLSPGLIYDA 625
P+ P I+ + TA G D G G + L L
Sbjct: 398 FPNAKPWQIRKLLENTAF------------DFNGNGWDHDTGYGLVKLDAALQGPLPTQG 445
Query: 626 QPIDYTV 632
++ V
Sbjct: 446 GVEEFQV 452
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 46.6 bits (109), Expect = 9e-06
Identities = 47/325 (14%), Positives = 83/325 (25%), Gaps = 82/325 (25%)
Query: 63 AVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKRRLHTTHS 122
V + + G K + + + G+ V P+ KR L
Sbjct: 47 IVKAVNGKVVLELPQIKVVSIKLNGMTVKQAYDKI-KALALKGIRYVEPSYKRELIKPTV 105
Query: 123 W---DFMGLMGEESMEIPGFSTKNQV-----------------------NIIVGFIDTGI 156
M + + + ++ NIIV +DTG+
Sbjct: 106 VKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGV 165
Query: 157 WPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSF 216
P + + + +G
Sbjct: 166 DGTHPDLEGQVIAGYRPAFDEELPAGT--------------------------------- 192
Query: 217 RSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGC----- 271
G+H A T A + G AP A+I D
Sbjct: 193 -DSSYGGSAGTHVAGTIAAKKDGKG---------IVGVAPGAKIMPIVIFDDPALVGGNG 242
Query: 272 --YDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGN 329
D + A A G +++ S G +S + +A G+++V SAGN
Sbjct: 243 YVGDDYVAAGIIWATDHGAKVMNHSW-----GGWGYSYTMKEAFDYAMEHGVVMVVSAGN 297
Query: 330 EGNEGSVTNLAPWMFTIAASSTDRD 354
++ A + I ++ D
Sbjct: 298 NTSDSHHQYPAGYPGVIQVAALDYY 322
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 66.1 bits (160), Expect = 2e-12
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 27/124 (21%)
Query: 492 TVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMA 551
V ++ A+FS G D+ APG+N+ + + + L+GTSMA
Sbjct: 170 AVGATDQNNNRASFSQYGAG--------LDIVAPGVNVQSTYPG----STYASLNGTSMA 217
Query: 552 CPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFL 611
PHV G A L+K +PSWS I++ + TAT+L + YGSG +
Sbjct: 218 TPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNL---------------YGSGLV 262
Query: 612 NPRK 615
N
Sbjct: 263 NAEA 266
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 66.1 bits (160), Expect = 2e-12
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 19/99 (19%)
Query: 519 KPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAI 578
+ +V APG + + + + L+GTSMA PHV G A LI + HP+ S S +++ +
Sbjct: 194 ELEVMAPGAGVYSTYPTN----TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRL 249
Query: 579 MTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVL 617
+TAT G++F YG G +N
Sbjct: 250 SSTAT---------------YLGSSFYYGKGLINVEAAA 273
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 64.5 bits (156), Expect = 7e-12
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 27/126 (21%)
Query: 492 TVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMA 551
V + + + A+FSS GP + DV APG++I + ++ +GTSMA
Sbjct: 176 AVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPGN----KYGAYNGTSMA 223
Query: 552 CPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFL 611
PHV G A LI + HP+W+ + ++S++ T T L G++F YG G +
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYYGKGLI 268
Query: 612 NPRKVL 617
N +
Sbjct: 269 NVQAAA 274
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 41.0 bits (95), Expect = 3e-04
Identities = 46/212 (21%), Positives = 73/212 (34%), Gaps = 58/212 (27%)
Query: 146 NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYE 205
N+ V ID+GI P G G + S N
Sbjct: 25 NVKVAVIDSGIDSSHPDLKVAG--------------GASMVPSETN-------------- 56
Query: 206 AEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKT 265
+D++ HG+H VA + G G AP A + K
Sbjct: 57 ------------PFQDNNSHGTH---------VAGTVAALNNSIGVLGVAPSASLYAVKV 95
Query: 266 CWDSG-CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVV 324
G ++ + AI + + ++++SLG G S A+ A + G++VV
Sbjct: 96 LGADGSGQYSWIINGIEWAIANNMDVINMSLG-----GPSGSAALKAAVDKAVASGVVVV 150
Query: 325 ASAGNE---GNEGSVTNLAPWMFTIAASSTDR 353
A+AGNE G+ +V + IA + D
Sbjct: 151 AAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS 182
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.5 bits (150), Expect = 4e-11
Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 533 WSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPI 592
+ + + +GTS + P GI L + + + ++ ++ T+ N
Sbjct: 244 VTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDW 303
Query: 593 TVDPKGRRGNAFDYGSGFLNPRKVLS 618
+ GR+ + YG G L+ +++
Sbjct: 304 ATNGVGRKVS-HSYGYGLLDAGAMVA 328
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.5 bits (150), Expect = 5e-11
Identities = 18/72 (25%), Positives = 34/72 (47%)
Query: 546 SGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFD 605
GTS A P G+ TL+ +P+ + ++ + +A L+KN D + +
Sbjct: 261 GGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHR 320
Query: 606 YGSGFLNPRKVL 617
YG G ++ K++
Sbjct: 321 YGFGKIDAHKLI 332
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 56.4 bits (134), Expect = 5e-09
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 25/113 (22%)
Query: 518 LKPDVTAPGLNIIAAWSP--------AVGKMQFNILSGTSMACPHVTGIATLIKAVHP-- 567
+KPDV APG I++A S A ++ + GTSMA P V G ++
Sbjct: 216 IKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKN 275
Query: 568 ---SWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVL 617
+ PS +K+A++ A + G + G G + K L
Sbjct: 276 RGITPKPSLLKAALIAGAADI------------GLGYPNGNQGWGRVTLDKSL 316
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 52.8 bits (125), Expect = 5e-08
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 540 MQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKP 591
+SGTSMA PHV G+A + + + + SA + I TA D ++ P
Sbjct: 215 GSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTANKGDLSNIP 265
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 49.2 bits (116), Expect = 9e-07
Identities = 23/129 (17%), Positives = 35/129 (27%), Gaps = 13/129 (10%)
Query: 221 DSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGC-YDVDLLAA 279
+ + L + G A A + D + L A
Sbjct: 66 SNGDYSDDQQGQGEW---------DLDSQSIVGSAGGAVQQLLFYMADQSASGNTGLTQA 116
Query: 280 FDDAIRDG---VHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSV 336
F+ A+ D V +SL D A A ++G S+G+EG
Sbjct: 117 FNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECN 176
Query: 337 TNLAPWMFT 345
P T
Sbjct: 177 NRGYPDGST 185
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 47.6 bits (112), Expect = 3e-06
Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 28/126 (22%)
Query: 493 VLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMAC 552
V + R+A+FS+ G DV AP + ++ +SGTSMA
Sbjct: 182 VGAVDQYDRLASFSNYGTW--------VDVVAP----GVDIVSTITGNRYAYMSGTSMAS 229
Query: 553 PHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
PHV G+A L+ + I+ AI TA + G + G +N
Sbjct: 230 PHVAGLAALLA--SQGRNNIEIRQAIEQTADKIS--------------GTGTYFKYGRIN 273
Query: 613 PRKVLS 618
++
Sbjct: 274 SYNAVT 279
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 39.9 bits (92), Expect = 7e-04
Identities = 40/211 (18%), Positives = 66/211 (31%), Gaps = 55/211 (26%)
Query: 146 NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYE 205
+ IDTG+ P + + G + + Y+
Sbjct: 32 GQEIAVIDTGVDYTHPDLD--------------------------GKVIKGYDFVDNDYD 65
Query: 206 AEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKT 265
P D + HG+H A A G G AP RI +
Sbjct: 66 -------------PMDLNNHGTHVAGI--------AAAETNNATGIAGMAPNTRILAVRA 104
Query: 266 CWDSG-CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVV 324
+G D+ A A G +++LS D + + +A ++G +VV
Sbjct: 105 LDRNGSGTLSDIADAIIYAADSGAEVINLS-----LGCDCHTTTLENAVNYAWNKGSVVV 159
Query: 325 ASAGNEGNEGSVT--NLAPWMFTIAASSTDR 353
A+AGN G+ + + + A DR
Sbjct: 160 AAAGNNGSSTTFEPASYENVIAVGAVDQYDR 190
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 45.5 bits (106), Expect = 1e-05
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 16/85 (18%)
Query: 533 WSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPI 592
+ LSGTSMA PHV G+A L+ + S S I++AI TA +
Sbjct: 209 IYSTYPTSTYASLSGTSMATPHVAGVAGLLASQGRSA--SNIRAAIENTADKIS------ 260
Query: 593 TVDPKGRRGNAFDYGSGFLNPRKVL 617
G + G +N K +
Sbjct: 261 --------GTGTYWAKGRVNAYKAV 277
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 768 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.78 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.74 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 96.72 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.13 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 93.71 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=2.7e-54 Score=505.23 Aligned_cols=357 Identities=25% Similarity=0.281 Sum_probs=269.0
Q ss_pred CCCcEEEEEeCCCCCCCCchhhHhHHHHHHHHhcCcccccccceEEEecceeeEEEEEeCHHHH----HHH--hcCCCeE
Q 004205 34 FSAKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQA----SQI--AQMPGVV 107 (768)
Q Consensus 34 ~~~~~yiV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~----~~L--~~~p~V~ 107 (768)
..+++|||.||+.. ...++++++ ..++++.+. .++.+.++++...+ +.+ ..+|+|+
T Consensus 29 ~~~~~~iV~~k~~~---------~~~~~~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 90 (671)
T d1r6va_ 29 YTEGKILVGYNDRS---------EVDKIVKAV--------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIR 90 (671)
T ss_dssp BCTTEEEEEESSHH---------HHHHHHHHH--------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEE
T ss_pred cCCCeEEEEECCcc---------CHHHHHHhc--------CCEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcCCCce
Confidence 35899999999753 223334433 245666665 56777888764332 233 3579999
Q ss_pred EEEecceeccCCC---------------------------CCcccccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCC
Q 004205 108 SVFPNMKRRLHTT---------------------------HSWDFMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPES 160 (768)
Q Consensus 108 ~V~~~~~~~~~~~---------------------------~s~~~~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~H 160 (768)
+|+|+...++... .....|+++.+++.++|.+..+| +||+|||||||||++|
T Consensus 91 ~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~a~~~~~tG-~gV~VaViDtGvd~~H 169 (671)
T d1r6va_ 91 YVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEEASG-TNIIVAVVDTGVDGTH 169 (671)
T ss_dssp EEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHHCSC-TTCEEEEEESCCBTTS
T ss_pred EECcceeEeeccccccCCCccccccccccccccccCcCccccccCcChhhcCccHHHHhcCCC-CCCEEEEEcCCcCCCC
Confidence 9999865443210 01123667767777765556789 9999999999999999
Q ss_pred CCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCCcchhhhccccccccc
Q 004205 161 PSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVAN 240 (768)
Q Consensus 161 p~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~ 240 (768)
|+|.+. ++..+.+..+.+. ....++.|..||||||||||||+.+.
T Consensus 170 pdl~~~---------------------------~~~~~~~~~~~~~-------~~~~~~~d~~gHGT~VAGiiaa~~~~- 214 (671)
T d1r6va_ 170 PDLEGQ---------------------------VIAGYRPAFDEEL-------PAGTDSSYGGSAGTHVAGTIAAKKDG- 214 (671)
T ss_dssp GGGTTT---------------------------BCCEEEGGGTEEE-------CTTCBCCTTCSHHHHHHHHHHCCCSS-
T ss_pred hhhcCC---------------------------cccCccccccCCC-------CCCCcCcccCCCCccccceeeeeccc-
Confidence 999642 1122222211110 01134567889999999999997521
Q ss_pred ccccccCCCcceeccCCCcEeeeeeecC------CC-CCHHHHHHHHHHHHHcCCcEEEeccCCCCCCCCCchhHHHHHH
Q 004205 241 MNYRGLAAGGARGGAPMARIAVYKTCWD------SG-CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGS 313 (768)
Q Consensus 241 ~~~~G~~~g~~~GVAP~A~L~~~kv~~~------~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~a~ 313 (768)
..+.||||+|+|+++|++++ .+ ...+.+++||+||+++|++|||||||+.. ....+..++
T Consensus 215 --------~g~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~-----~~~~~~~ai 281 (671)
T d1r6va_ 215 --------KGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG-----YSYTMKEAF 281 (671)
T ss_dssp --------SSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC-----CCHHHHHHH
T ss_pred --------cceeeecCcceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEeccccccc-----CChHHHHHH
Confidence 23489999999999999974 23 56678999999999999999999999874 345677888
Q ss_pred HHhhcCCcEEEEeccCCCC--CCCcccCCCceEEEcccCCCccceeeEEeCCCceEecccccccccccchhccccccccc
Q 004205 314 FHATSRGILVVASAGNEGN--EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYA 391 (768)
Q Consensus 314 ~~a~~~Gi~vV~AAGN~g~--~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~ 391 (768)
+.|.++|+++|+||||++. ....|+..|++|+|||++..
T Consensus 282 ~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~--------------------------------------- 322 (671)
T d1r6va_ 282 DYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYY--------------------------------------- 322 (671)
T ss_dssp HHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEE---------------------------------------
T ss_pred HHHHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCC---------------------------------------
Confidence 8999999999999999998 56788899999999985311
Q ss_pred cccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHH
Q 004205 392 GYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGN 471 (768)
Q Consensus 392 ~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~ 471 (768)
T Consensus 323 -------------------------------------------------------------------------------- 322 (671)
T d1r6va_ 323 -------------------------------------------------------------------------------- 322 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCC--------------C
Q 004205 472 KILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPA--------------V 537 (768)
Q Consensus 472 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~--------------~ 537 (768)
.....++.||+|||.. ||+|||++|+|+++.. .
T Consensus 323 -------------------------~~~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~ 369 (671)
T d1r6va_ 323 -------------------------GGTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPAT 369 (671)
T ss_dssp -------------------------TTEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCS
T ss_pred -------------------------CCcceeeeccCCCCCc--------eEEecCCCeEeecCCCCcccccccccccccc
Confidence 0113578999999986 9999999999998732 1
Q ss_pred CCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcccccccCccccC
Q 004205 538 GKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVL 617 (768)
Q Consensus 538 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~vn~~~Al 617 (768)
.++.|..++|||||||||||++|||+|++|+|+++|||++|++||++++. ...+..||||+||+.+|+
T Consensus 370 ~~~~y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~------------~g~~~~~G~G~vna~~Av 437 (671)
T d1r6va_ 370 NGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNG------------NGWDHDTGYGLVKLDAAL 437 (671)
T ss_dssp SSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSS------------SSCBTTTBTCBCCHHHHH
T ss_pred CCCeeeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC------------CCCCCCcccChhCHHHHh
Confidence 24579999999999999999999999999999999999999999997532 234568999999999999
Q ss_pred CCCe
Q 004205 618 SPGL 621 (768)
Q Consensus 618 ~~~l 621 (768)
+..+
T Consensus 438 ~~~~ 441 (671)
T d1r6va_ 438 QGPL 441 (671)
T ss_dssp HCCC
T ss_pred hCcC
Confidence 7544
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=1.3e-49 Score=445.18 Aligned_cols=371 Identities=23% Similarity=0.314 Sum_probs=243.3
Q ss_pred cccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCc
Q 004205 125 FMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGY 204 (768)
Q Consensus 125 ~~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~ 204 (768)
.||+..++++.+|+. +| +||+|||||||||++||+|++. ++..+++...
T Consensus 5 ~wg~~~i~a~~~~~~--~G-~gv~VaviDtGid~~Hp~~~~~---------------------------~~~~~~~~~~- 53 (435)
T d1v6ca_ 5 PWGQTFVGATVLSDS--QA-GNRTICIIDSGYDRSHNDLNAN---------------------------NVTGTNNSGT- 53 (435)
T ss_dssp CHHHHHTTGGGSCCT--TG-GGCEEEEEESCCCTTSTTTTTS---------------------------EEEECCCTTS-
T ss_pred CccHhhcCcchhhhc--CC-CCcEEEEEcCCCCCCChhhccC---------------------------eeeeeccCCC-
Confidence 367777888888874 68 9999999999999999999632 2222222221
Q ss_pred cccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccC--CCcEeeeeeecCCC-CCHHHHHHHHH
Q 004205 205 EAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAP--MARIAVYKTCWDSG-CYDVDLLAAFD 281 (768)
Q Consensus 205 ~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP--~A~L~~~kv~~~~g-~~~~~i~~ai~ 281 (768)
.+...+.|++||||||||||||+..+ ..+.|||| +++|+.+|++.... +...++++||+
T Consensus 54 ---------~~~~~~~d~~gHGThvAgiiag~~~~---------~g~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~ 115 (435)
T d1v6ca_ 54 ---------GNWYQPGNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAID 115 (435)
T ss_dssp ---------CCTTCCCSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHH
T ss_pred ---------CCCCCCCCCCCcHHHHHHHHhccCCC---------CceEEEecccCceeeeeecccccccchhhhhhhHHH
Confidence 11245678999999999999997632 23489999 89999999997654 66678999999
Q ss_pred HHHH-cCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeE
Q 004205 282 DAIR-DGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEI 359 (768)
Q Consensus 282 ~a~~-~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~ 359 (768)
++++ .+++|||+|||... ....+..+++.+.++|+++|+||||+|. ..+.++..+++|+|||++.+.......
T Consensus 116 ~a~~~~~~~vin~S~g~~~-----~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s 190 (435)
T d1v6ca_ 116 TCVNSGGANVVTMSLGGSG-----STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFS 190 (435)
T ss_dssp HHHHTTCCSEEEECCCBSC-----CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTS
T ss_pred HHhhcccceEEecccCCCC-----CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCccccc
Confidence 9996 59999999999874 3355667778889999999999999999 778899999999999987664332211
Q ss_pred EeCCCceE--ecccc-cccc---------------cccch----hcccccccc---c--cccCcccCCccC--cCCCCCC
Q 004205 360 VLGDGANF--TGESL-SLCK---------------MNASA----RIISASEAY---A--GYFTPYQSSYCL--ESSLNST 410 (768)
Q Consensus 360 ~~~~~~~~--~g~~~-~~~p---------------~~~~~----~~~~~~~~~---~--~~~~~~~~~~c~--~~~~~~~ 410 (768)
..+....+ .|..+ ..++ ..... ......+.. . ..........|. .......
T Consensus 191 ~~g~~vdv~apG~~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (435)
T d1v6ca_ 191 QYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCG 270 (435)
T ss_dssp CCCSSEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECC
T ss_pred CCCCceEEeecccceeeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeecc
Confidence 11111110 01100 0000 00000 000000000 0 000000000000 1112234
Q ss_pred CCCCeEEEEeecC--CCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEe
Q 004205 411 KARGKVLVCRHAE--SSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIF 488 (768)
Q Consensus 411 ~~~gkivl~~~~~--~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~ 488 (768)
++.+++.++.+.. ........+.......+..+++.+++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 311 (435)
T d1v6ca_ 271 NMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSN--------------------------------------- 311 (435)
T ss_dssp CCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECC---------------------------------------
T ss_pred ccccccceeeccCCccccceeeeeceeecccCCcceEEecc---------------------------------------
Confidence 5667777776432 11223445555555556655554433
Q ss_pred cCeeecCCCCCCccccccCCCCCCCC--CCcccCceeeCCceEEEEecCC-------------CCCcceEEeccccchhH
Q 004205 489 PAKTVLGSEPAPRVAAFSSKGPNALN--PEILKPDVTAPGLNIIAAWSPA-------------VGKMQFNILSGTSMACP 553 (768)
Q Consensus 489 ~~~~~~~~~~~~~~a~fSs~Gp~~~~--~~~~KPDI~APG~~I~Sa~~~~-------------~~~~~y~~~sGTSmAaP 553 (768)
+.+|.... ....||||.+||..|.++.... .....|..|||||||||
T Consensus 312 ------------------~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP 373 (435)
T d1v6ca_ 312 ------------------SALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATP 373 (435)
T ss_dssp ------------------SSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHH
T ss_pred ------------------CCCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHH
Confidence 22222211 2457889999998876432100 12356999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcccccccCccccCC
Q 004205 554 HVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLS 618 (768)
Q Consensus 554 ~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~vn~~~Al~ 618 (768)
||||++|||+|++|+|+++|||++||+||++++ ..+++++||+|+||+.+|++
T Consensus 374 ~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~------------~~~~~~~~G~G~vn~~~A~~ 426 (435)
T d1v6ca_ 374 HVSGVATLVWSYHPECSASQVRAALNATADDLS------------VAGRDNQTGYGMINAVAAKA 426 (435)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCS------------SSSCBTTTBTCBCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccC------------CCCCCCCcccceecHHHHHH
Confidence 999999999999999999999999999999652 23567799999999999963
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=3.4e-49 Score=415.33 Aligned_cols=266 Identities=27% Similarity=0.358 Sum_probs=217.4
Q ss_pred cccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCc
Q 004205 125 FMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGY 204 (768)
Q Consensus 125 ~~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~ 204 (768)
.|+++.++++.+|+++.+| +||+|||||||||++||+|.+ +++..+.+.+.
T Consensus 12 qw~l~~i~~~~aw~~~~~G-~gv~VaviDsGi~~~h~~l~~---------------------------~~~~~~~~~~~- 62 (280)
T d1dbia_ 12 QYGPQNTYTDYAWDVTKGS-SGQEIAVIDTGVDYTHPDLDG---------------------------KVIKGYDFVDN- 62 (280)
T ss_dssp CCTTGGGTHHHHTTTCCCC-TTCEEEEEESCCCTTSTTTTT---------------------------TEEEEEETTTT-
T ss_pred ccChhhCCHHHHHhccCCC-CCeEEEEEccCcCCCChhhcC---------------------------CeeecccccCC-
Confidence 3688888899999999999 999999999999999999963 23444444332
Q ss_pred cccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHH
Q 004205 205 EAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDA 283 (768)
Q Consensus 205 ~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a 283 (768)
...+.|.++|||||||+|+|...+. ..+.||||+|+|+.+|+++..+ +...++++||+|+
T Consensus 63 -----------~~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a 123 (280)
T d1dbia_ 63 -----------DYDPMDLNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYA 123 (280)
T ss_dssp -----------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHH
T ss_pred -----------CCccccccccccceeEeeeccccCC--------CceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHH
Confidence 1346688999999999999876432 3458999999999999998765 7889999999999
Q ss_pred HHcCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeEEeC
Q 004205 284 IRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVLG 362 (768)
Q Consensus 284 ~~~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~~~~ 362 (768)
+++|++|||||||... ..+....+...+.++|+++|+||||+|. ....|+..+++|+|||.+
T Consensus 124 ~~~g~~iin~S~g~~~-----~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~------------ 186 (280)
T d1dbia_ 124 ADSGAEVINLSLGCDC-----HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD------------ 186 (280)
T ss_dssp HHTTCSEEEECCSSCC-----CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEEC------------
T ss_pred HHcCCcEeeccccccc-----cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeec------------
Confidence 9999999999999874 3345566777888999999999999998 777888899999999743
Q ss_pred CCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCce
Q 004205 363 DGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGV 442 (768)
Q Consensus 363 ~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~ 442 (768)
T Consensus 187 -------------------------------------------------------------------------------- 186 (280)
T d1dbia_ 187 -------------------------------------------------------------------------------- 186 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCce
Q 004205 443 GMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDV 522 (768)
Q Consensus 443 g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 522 (768)
..++++.||++||.. |+
T Consensus 187 -------------------------------------------------------~~~~~a~~S~~g~~~--------d~ 203 (280)
T d1dbia_ 187 -------------------------------------------------------QYDRLASFSNYGTWV--------DV 203 (280)
T ss_dssp -------------------------------------------------------TTSCBCTTBCCSTTC--------CE
T ss_pred -------------------------------------------------------CCCCcCCcCCCCCcc--------cc
Confidence 125678999999977 99
Q ss_pred eeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCC
Q 004205 523 TAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGN 602 (768)
Q Consensus 523 ~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~ 602 (768)
+|||.+|+++... ..|..++|||||||+|||++|||+|. .+++.+||++|++||+++. .+
T Consensus 204 ~apg~~i~~~~~~----~~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~--------------~~ 263 (280)
T d1dbia_ 204 VAPGVDIVSTITG----NRYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKIS--------------GT 263 (280)
T ss_dssp EEECSSEEEEETT----TEEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCT--------------TB
T ss_pred cCCccceeccccC----cceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCC--------------CC
Confidence 9999999999874 56999999999999999999999995 5689999999999998642 23
Q ss_pred CCcccccccCccccCC
Q 004205 603 AFDYGSGFLNPRKVLS 618 (768)
Q Consensus 603 ~~~~G~G~vn~~~Al~ 618 (768)
...||+|+||+++||+
T Consensus 264 ~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 264 GTYFKYGRINSYNAVT 279 (280)
T ss_dssp TTTBSSEECCHHHHHT
T ss_pred CCcCCCCeEcHHHHcC
Confidence 4579999999999985
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=3e-49 Score=414.93 Aligned_cols=263 Identities=31% Similarity=0.465 Sum_probs=220.4
Q ss_pred ccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCcc
Q 004205 126 MGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYE 205 (768)
Q Consensus 126 ~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~ 205 (768)
||++.++++.+|.++++| +||+|||||||||++||+|+ +.+.++|..+
T Consensus 6 wgl~~i~~~~~~~~g~tG-~gv~VaViDtGv~~~Hp~l~-----------------------------~~~~~~~~~~-- 53 (274)
T d1r0re_ 6 YGIPLIKADKVQAQGFKG-ANVKVAVLDTGIQASHPDLN-----------------------------VVGGASFVAG-- 53 (274)
T ss_dssp THHHHTTHHHHHHHTCSC-TTCEEEEEESCCCTTCTTCC-----------------------------EEEEEECSTT--
T ss_pred cchhhcChHHHHHcCCCC-CCeEEEEECCCCCCCChhhc-----------------------------ccCCccccCC--
Confidence 577777888999999999 99999999999999999994 2344445432
Q ss_pred ccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHH
Q 004205 206 AEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAI 284 (768)
Q Consensus 206 ~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~ 284 (768)
...+.|.+||||||||||++.... ..+.|+||+|+|+.+|+++..+ +..+++++|++++.
T Consensus 54 ----------~~~~~d~~gHGT~vAgii~~~~~~---------~~~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~a~ 114 (274)
T d1r0re_ 54 ----------EAYNTDGNGHGTHVAGTVAALDNT---------TGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWAT 114 (274)
T ss_dssp ----------CCTTCCSSSHHHHHHHHHHCCSSS---------SBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHH
T ss_pred ----------CCCCCCcccccccccccccccccc---------ccccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHHHH
Confidence 134567889999999999987632 2248999999999999998776 67889999999999
Q ss_pred HcCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-----CCCcccCCCceEEEcccCCCccceeeE
Q 004205 285 RDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-----EGSVTNLAPWMFTIAASSTDRDFTSEI 359 (768)
Q Consensus 285 ~~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-----~~~~~~~~p~vitVgAs~~~~~~~~~~ 359 (768)
+++++|+|+|||... ..........++.++++++|+||||+|. ....++..+++|+|||.+.
T Consensus 115 ~~~~~i~n~S~~~~~-----~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~-------- 181 (274)
T d1r0re_ 115 TNGMDVINMSLGGAS-----GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS-------- 181 (274)
T ss_dssp HTTCSEEEECEEBSS-----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT--------
T ss_pred hcCCceecccccccc-----chhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECC--------
Confidence 999999999999885 2344556667888999999999999986 2344677889999997431
Q ss_pred EeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHc
Q 004205 360 VLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEA 439 (768)
Q Consensus 360 ~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~ 439 (768)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T d1r0re_ 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCccc
Q 004205 440 GGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILK 519 (768)
Q Consensus 440 Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~K 519 (768)
.+.++.||++||..
T Consensus 182 -----------------------------------------------------------~~~~~~~s~~g~~~------- 195 (274)
T d1r0re_ 182 -----------------------------------------------------------NSNRASFSSVGAEL------- 195 (274)
T ss_dssp -----------------------------------------------------------TSCBCTTCCCSTTE-------
T ss_pred -----------------------------------------------------------CCCcccccCCCCCE-------
Confidence 25678999999855
Q ss_pred CceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCC
Q 004205 520 PDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGR 599 (768)
Q Consensus 520 PDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~ 599 (768)
||+|||++|+++.+. +.|..++|||||||+|||++|||+|++|+|++++||++|++||+++.
T Consensus 196 -di~APG~~i~~~~~~----~~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~------------- 257 (274)
T d1r0re_ 196 -EVMAPGAGVYSTYPT----NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG------------- 257 (274)
T ss_dssp -EEEEECSSEEEEETT----TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS-------------
T ss_pred -EEEecCCCcccccCC----CCeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC-------------
Confidence 999999999999874 56999999999999999999999999999999999999999998642
Q ss_pred CCCCCcccccccCccccCC
Q 004205 600 RGNAFDYGSGFLNPRKVLS 618 (768)
Q Consensus 600 ~~~~~~~G~G~vn~~~Al~ 618 (768)
+...||+|+||+.+|++
T Consensus 258 --~~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 258 --SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp --CHHHHTTCBCCHHHHTC
T ss_pred --CCCceEcCeecHHHhcC
Confidence 24589999999999985
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=5.3e-49 Score=414.52 Aligned_cols=265 Identities=30% Similarity=0.451 Sum_probs=221.2
Q ss_pred ccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCcc
Q 004205 126 MGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYE 205 (768)
Q Consensus 126 ~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~ 205 (768)
|+++.++++.+|+++++| +||+|||||||||++||+|+ ....+++....
T Consensus 6 ~~l~~i~a~~aw~~g~tG-~Gv~IaviDtGv~~~Hp~l~-----------------------------~~~~~~~~~~~- 54 (281)
T d1to2e_ 6 YGVSQIKAPALHSQGYTG-SNVKVAVIDSGIDSSHPDLK-----------------------------VAGGASMVPSE- 54 (281)
T ss_dssp HHHHHTTHHHHHHHTCSC-TTCEEEEEESCCCTTCTTCC-----------------------------EEEEEECCTTC-
T ss_pred cChHHhCcHHHHHCCCCC-CCeEEEEECCCCCCCChhhh-----------------------------hcCCccccCCC-
Confidence 577788899999999999 99999999999999999995 22233333221
Q ss_pred ccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHH
Q 004205 206 AEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAI 284 (768)
Q Consensus 206 ~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~ 284 (768)
.....+..+|||||||||+|.... ....||||+|+|+.+|++...+ +...++++||+|++
T Consensus 55 ----------~~~~~~~~~HGT~vAgiiag~~~~---------~~~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~a~ 115 (281)
T d1to2e_ 55 ----------TNPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAI 115 (281)
T ss_dssp ----------CCTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHH
T ss_pred ----------CCCCcCcCCCCceeecccccCCCC---------CCcceeecccEEEEEEEeCCCCCcCHHHHHHHHHHHH
Confidence 012234679999999999987522 2348999999999999998766 67788999999999
Q ss_pred HcCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-----CCCcccCCCceEEEcccCCCccceeeE
Q 004205 285 RDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-----EGSVTNLAPWMFTIAASSTDRDFTSEI 359 (768)
Q Consensus 285 ~~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-----~~~~~~~~p~vitVgAs~~~~~~~~~~ 359 (768)
+.+++|||+|||... ....+..+++.+.++|+++|+||||+|. ....|+..+++|+|||.+.
T Consensus 116 ~~~~~v~n~S~g~~~-----~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~-------- 182 (281)
T d1to2e_ 116 ANNMDVINMSLGGPS-----GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS-------- 182 (281)
T ss_dssp HTTCSEEEECEEBSC-----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT--------
T ss_pred hccccccccccCCCc-----chHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecC--------
Confidence 999999999999874 4466778888999999999999999987 2335677889999997431
Q ss_pred EeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHc
Q 004205 360 VLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEA 439 (768)
Q Consensus 360 ~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~ 439 (768)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T d1to2e_ 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCccc
Q 004205 440 GGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILK 519 (768)
Q Consensus 440 Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~K 519 (768)
.++++.||++||..
T Consensus 183 -----------------------------------------------------------~~~~~~~S~~G~~~------- 196 (281)
T d1to2e_ 183 -----------------------------------------------------------SNQRASFSSVGPEL------- 196 (281)
T ss_dssp -----------------------------------------------------------TSCBCTTCCCSTTC-------
T ss_pred -----------------------------------------------------------CCCCCcccCCCCCc-------
Confidence 25678999999987
Q ss_pred CceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCC
Q 004205 520 PDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGR 599 (768)
Q Consensus 520 PDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~ 599 (768)
|++|||.+|+++.+. +.|..++|||||||+|||++|||+|++|.|++++||++|++||+++.
T Consensus 197 -d~~apG~~i~s~~~~----~~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~------------- 258 (281)
T d1to2e_ 197 -DVMAPGVSIQSTLPG----NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG------------- 258 (281)
T ss_dssp -CEEEECSSEEEEETT----TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS-------------
T ss_pred -cccCCCCCceeecCC----CeeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC-------------
Confidence 999999999999874 56999999999999999999999999999999999999999999642
Q ss_pred CCCCCcccccccCccccCCC
Q 004205 600 RGNAFDYGSGFLNPRKVLSP 619 (768)
Q Consensus 600 ~~~~~~~G~G~vn~~~Al~~ 619 (768)
+...||+|+||+.+|++.
T Consensus 259 --~~~~~G~G~ld~~~A~~~ 276 (281)
T d1to2e_ 259 --DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp --CHHHHTTCBCCHHHHTSS
T ss_pred --CCCCcccCcccHHHHHhh
Confidence 245799999999999983
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=2.1e-48 Score=409.45 Aligned_cols=265 Identities=28% Similarity=0.406 Sum_probs=224.4
Q ss_pred cccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCc
Q 004205 125 FMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGY 204 (768)
Q Consensus 125 ~~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~ 204 (768)
.|+++.++++++|+.+ +| +||+|+|||||||++||+|.+ +++..++|.++
T Consensus 12 ~w~l~~i~a~~aw~~~-tG-~Gv~VaViDsGi~~~H~~~~~---------------------------~~~~~~~~~~~- 61 (279)
T d1thma_ 12 QYGPQKIQAPQAWDIA-EG-SGAKIAIVDTGVQSNHPDLAG---------------------------KVVGGWDFVDN- 61 (279)
T ss_dssp CCHHHHTTHHHHHTTC-CC-TTCEEEEEESCCCTTCTTTTT---------------------------TEEEEEETTTT-
T ss_pred CcChhhCCHHHHHhcc-CC-CCcEEEEEcCCCCCCChhhcC---------------------------Ceecccccccc-
Confidence 3688888899999987 89 999999999999999999963 34455555443
Q ss_pred cccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHH
Q 004205 205 EAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDA 283 (768)
Q Consensus 205 ~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a 283 (768)
...+.|..+|||||||+|++...++ ..+.||||+|+|+.+|++...+ +...+++++|+++
T Consensus 62 -----------~~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~ 122 (279)
T d1thma_ 62 -----------DSTPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYA 122 (279)
T ss_dssp -----------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHH
T ss_pred -----------CcccccccccccccceeeeeccCCC--------ccccccCCcceEEEEEEEecCCCCcHHHHHHHHHHH
Confidence 1356788999999999999976432 2358999999999999998766 7888999999999
Q ss_pred HHcCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeEEeC
Q 004205 284 IRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVLG 362 (768)
Q Consensus 284 ~~~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~~~~ 362 (768)
.+.+++|+|||||... .......+...+.++|+++|+|+||+|. ....+...+++|+|||++.
T Consensus 123 ~~~~~~i~n~S~G~~~-----~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~----------- 186 (279)
T d1thma_ 123 ADQGAKVISLSLGGTV-----GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ----------- 186 (279)
T ss_dssp HHTTCSEEEECCCBSS-----CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT-----------
T ss_pred hhcCCceeccccCccc-----cchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccC-----------
Confidence 9999999999999874 3455667777889999999999999998 7777888899999997431
Q ss_pred CCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCce
Q 004205 363 DGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGV 442 (768)
Q Consensus 363 ~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~ 442 (768)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d1thma_ 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCce
Q 004205 443 GMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDV 522 (768)
Q Consensus 443 g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 522 (768)
.++++.||++|++. ||
T Consensus 187 --------------------------------------------------------~~~~~~~S~~G~~~--------di 202 (279)
T d1thma_ 187 --------------------------------------------------------NDNKSSFSTYGSWV--------DV 202 (279)
T ss_dssp --------------------------------------------------------TSCBCTTCCCCTTC--------CE
T ss_pred --------------------------------------------------------CCCCccccCCCceE--------EE
Confidence 25678999999987 99
Q ss_pred eeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCC
Q 004205 523 TAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGN 602 (768)
Q Consensus 523 ~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~ 602 (768)
+|||.+|+++.+. +.|..++|||||||+|||++|||+|++| ++.+||++|++||+++. .+
T Consensus 203 ~Apg~~i~~~~~~----~~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~--------------g~ 262 (279)
T d1thma_ 203 AAPGSSIYSTYPT----STYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKIS--------------GT 262 (279)
T ss_dssp EEECSSEEEEETT----TEEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCT--------------TB
T ss_pred eeeeeccccccCc----ccccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCC--------------CC
Confidence 9999999999874 5699999999999999999999999665 89999999999998652 23
Q ss_pred CCcccccccCccccCC
Q 004205 603 AFDYGSGFLNPRKVLS 618 (768)
Q Consensus 603 ~~~~G~G~vn~~~Al~ 618 (768)
+..||+|+||+.+||+
T Consensus 263 ~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 263 GTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp TTTBSSEECCHHHHHH
T ss_pred CCcceeeeEcHHHhhC
Confidence 4579999999999985
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=2.4e-48 Score=406.78 Aligned_cols=262 Identities=32% Similarity=0.453 Sum_probs=221.3
Q ss_pred ccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCcc
Q 004205 126 MGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYE 205 (768)
Q Consensus 126 ~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~ 205 (768)
|+++.++++.+|+++++| +||+||||||||| +||+|.. ...++|..+
T Consensus 6 w~l~~i~~~~aw~~g~tG-~gv~V~ViDsGv~-~h~~l~~-----------------------------~~~~~~~~~-- 52 (269)
T d1gcia_ 6 WGISRVQAPAAHNRGLTG-SGVKVAVLDTGIS-THPDLNI-----------------------------RGGASFVPG-- 52 (269)
T ss_dssp HHHHHTTHHHHHHTTCSC-TTCEEEEEESCCC-CCTTCCE-----------------------------EEEEECSTT--
T ss_pred cchhHhCcHHHHhCCCCC-CCeEEEEECCCCC-CCcccCc-----------------------------cccccccCC--
Confidence 567777888999999999 9999999999998 8999941 223344332
Q ss_pred ccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHH
Q 004205 206 AEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAI 284 (768)
Q Consensus 206 ~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~ 284 (768)
...+.|.++|||||||||++.... ....|+||+|+|+.+|++...+ .....+.++++++.
T Consensus 53 ----------~~~~~d~~~HGT~vAgii~~~~~~---------~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~ 113 (269)
T d1gcia_ 53 ----------EPSTQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAG 113 (269)
T ss_dssp ----------CCSCSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHH
T ss_pred ----------CCCccccchhhheecccccccCCC---------ccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHH
Confidence 134567889999999999887632 2347999999999999998765 67788999999999
Q ss_pred HcCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeEEeCC
Q 004205 285 RDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVLGD 363 (768)
Q Consensus 285 ~~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~ 363 (768)
.+++++||+|||... .......+...+.++|++||+||||+|. ....|+..+++|+||+++.
T Consensus 114 ~~~~~~in~s~g~~~-----~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------ 176 (269)
T d1gcia_ 114 NNGMHVANLSLGSPS-----PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ------------ 176 (269)
T ss_dssp HTTCSEEEECCCBSS-----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT------------
T ss_pred hcccccccccccccc-----ccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEcc------------
Confidence 999999999999874 2344556677889999999999999998 7778889999999997431
Q ss_pred CceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceE
Q 004205 364 GANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVG 443 (768)
Q Consensus 364 ~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g 443 (768)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T d1gcia_ 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCcee
Q 004205 444 MILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVT 523 (768)
Q Consensus 444 ~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~ 523 (768)
.+.++.||++||.. ||+
T Consensus 177 -------------------------------------------------------~~~~~~~S~~G~~~--------di~ 193 (269)
T d1gcia_ 177 -------------------------------------------------------NNNRASFSQYGAGL--------DIV 193 (269)
T ss_dssp -------------------------------------------------------TSCBCTTCCCSTTE--------EEE
T ss_pred -------------------------------------------------------CCCcccccCCCCCc--------eEE
Confidence 25678999999976 999
Q ss_pred eCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCC
Q 004205 524 APGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNA 603 (768)
Q Consensus 524 APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~ 603 (768)
|||.++.++.+. ..|..++|||||||+|||++|||+|++|+|+++|||++|++||+++. ++
T Consensus 194 Apg~~~~~~~~~----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g---------------~~ 254 (269)
T d1gcia_ 194 APGVNVQSTYPG----STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG---------------ST 254 (269)
T ss_dssp EECSSEEEEETT----TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS---------------CH
T ss_pred EeeecceeccCC----CceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC---------------CC
Confidence 999999999874 56999999999999999999999999999999999999999999642 23
Q ss_pred CcccccccCccccCC
Q 004205 604 FDYGSGFLNPRKVLS 618 (768)
Q Consensus 604 ~~~G~G~vn~~~Al~ 618 (768)
..||+|+||+++|++
T Consensus 255 ~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 255 NLYGSGLVNAEAATR 269 (269)
T ss_dssp HHHTTCBCCHHHHTC
T ss_pred CCcccCeEcHHHhcC
Confidence 478999999999985
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=2e-44 Score=384.39 Aligned_cols=294 Identities=29% Similarity=0.369 Sum_probs=224.4
Q ss_pred cccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCc
Q 004205 125 FMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGY 204 (768)
Q Consensus 125 ~~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~ 204 (768)
.||++.++++.+|..+++| +||+|||||||||++||+|.+ ++...++|....
T Consensus 7 ~wgl~~i~~~~aw~~~~~G-~gv~V~ViDsGv~~~Hp~~~~---------------------------~~~~~~~~~~~~ 58 (309)
T d2ixta1 7 PWGIKAIYNNDTLTSTTGG-SGINIAVLDTGVNTSHPDLVN---------------------------NVEQCKDFTGAT 58 (309)
T ss_dssp CHHHHHHHTCTTCCCCCCC-TTCEEEEEESCCCTTCTTTTT---------------------------TEEEEEESSSSS
T ss_pred ChhHhhcCChhhhccCCCC-CCeEEEEEccCCCCCChhHhc---------------------------cccccccccCCC
Confidence 4688888899999999999 999999999999999999963 244445554432
Q ss_pred cccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHH
Q 004205 205 EAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDA 283 (768)
Q Consensus 205 ~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a 283 (768)
.. ......|.+||||||||||+|...++ ...+.||||+|+|+.+|++...+ +..++++++++++
T Consensus 59 ~~--------~~~~~~d~~gHGT~VAgiiaa~~~~~-------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a 123 (309)
T d2ixta1 59 TP--------INNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHA 123 (309)
T ss_dssp SC--------EETCCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHH
T ss_pred CC--------CCCCcccccccccccccccccccccc-------chhhhhhhhhccceeeeeecCCCCccccccccccccc
Confidence 11 11345678899999999999876332 22358999999999999998765 7788899999998
Q ss_pred HHcC-----CcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC---CCCcccCCCceEEEcccCCCccc
Q 004205 284 IRDG-----VHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN---EGSVTNLAPWMFTIAASSTDRDF 355 (768)
Q Consensus 284 ~~~g-----~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~---~~~~~~~~p~vitVgAs~~~~~~ 355 (768)
++.+ ..|+|+|++... .......++..+.++|+++|+||||++. ....++..+++++|++.......
T Consensus 124 ~~~~~~~~~~~v~~~s~~~~~-----~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~ 198 (309)
T d2ixta1 124 ADQATATGTKTIISMSLGSSA-----NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQN 198 (309)
T ss_dssp HHHHHHHTCCEEEEECCCBSS-----CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEET
T ss_pred ccccccccccccccccccccc-----cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhcccccccccccccc
Confidence 8753 479999999874 3345566677888999999999999987 33456677888888864321100
Q ss_pred eeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHH
Q 004205 356 TSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMV 435 (768)
Q Consensus 356 ~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~ 435 (768)
.. . .
T Consensus 199 ~~----------------------------------------------------------~---~--------------- 202 (309)
T d2ixta1 199 GT----------------------------------------------------------Y---R--------------- 202 (309)
T ss_dssp TE----------------------------------------------------------E---E---------------
T ss_pred cc----------------------------------------------------------c---c---------------
Confidence 00 0 0
Q ss_pred HHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCC
Q 004205 436 VKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNP 515 (768)
Q Consensus 436 ~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~ 515 (768)
.........++++|+.. .
T Consensus 203 ------------------------------------------------------------~~~~~~~~~~~~~~~~~--~ 220 (309)
T d2ixta1 203 ------------------------------------------------------------VADYSSRGYISTAGDYV--I 220 (309)
T ss_dssp ------------------------------------------------------------ECTTSCCCCTTTTTSSS--C
T ss_pred ------------------------------------------------------------ccccccccccccccccc--c
Confidence 00112344567777765 4
Q ss_pred CcccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCC
Q 004205 516 EILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVD 595 (768)
Q Consensus 516 ~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~ 595 (768)
...||||+|||.+|+++.+. ..|..++|||||||+|||++|||+|++|+|+++|||++|++||++++..+..
T Consensus 221 ~~~~vdi~apG~~~~s~~~~----~~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~---- 292 (309)
T d2ixta1 221 QEGDIEISAPGSSVYSTWYN----GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY---- 292 (309)
T ss_dssp CTTCCCEEEECSSEEEECTT----SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBST----
T ss_pred CCCcceeecCCCceeeecCC----CcceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCc----
Confidence 66899999999999999774 5699999999999999999999999999999999999999999987644321
Q ss_pred CCCCCCCCCcccccccCc
Q 004205 596 PKGRRGNAFDYGSGFLNP 613 (768)
Q Consensus 596 ~~~~~~~~~~~G~G~vn~ 613 (768)
.....+++.+|+|++|+
T Consensus 293 -g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 293 -GAAIGDDYASGFGFARV 309 (309)
T ss_dssp -TCCSSSBTTTBTCBCCC
T ss_pred -CCccCCCcccCCCEecC
Confidence 23455677889999875
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=3.7e-43 Score=369.17 Aligned_cols=249 Identities=29% Similarity=0.351 Sum_probs=198.7
Q ss_pred ccccccCCCCcCC-----CCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEec
Q 004205 126 MGLMGEESMEIPG-----FSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYY 200 (768)
Q Consensus 126 ~g~~~~~~~~~~~-----~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~ 200 (768)
|||++++..+.+. ...+| +||+|||||||||++||+|.+. +.....+
T Consensus 8 wgl~~i~~~~~~~~~~~~~~~tG-~Gv~VaViDsGid~~Hpdf~g~---------------------------~~~~~~~ 59 (279)
T d2pwaa1 8 WGLARISSTSPGTSTYYYDESAG-QGSCVYVIDTGIEASHPEFEGR---------------------------AQMVKTY 59 (279)
T ss_dssp HHHHHHTCSSTTCCCEECCTTTT-TTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEES
T ss_pred CchhhhCCCCcCCCcceecCCCC-CCeEEEEECcCCCCCChhhcCC---------------------------ceeccCC
Confidence 5665554444433 34479 9999999999999999999632 1111111
Q ss_pred cCCccccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHH
Q 004205 201 MSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAA 279 (768)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~a 279 (768)
. ..+.|.+||||||||||+|+. .|+||+|+|+.+|++.... ...+.+.++
T Consensus 60 ~---------------~~~~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~ 110 (279)
T d2pwaa1 60 Y---------------YSSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAG 110 (279)
T ss_dssp S---------------SCSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHH
T ss_pred C---------------CCcccccCccccccccccccc--------------cccCCCccccceeeecCCcccccccccch
Confidence 1 234577899999999999865 7999999999999998665 677889999
Q ss_pred HHHHHHcC-------CcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC--CCCcccCCCceEEEcccC
Q 004205 280 FDDAIRDG-------VHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN--EGSVTNLAPWMFTIAASS 350 (768)
Q Consensus 280 i~~a~~~g-------~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~--~~~~~~~~p~vitVgAs~ 350 (768)
++++.... ++|+|+|||... .+.+..++..+.++|+++|+||||++. ....+...|++|+|||++
T Consensus 111 ~~~~~~~~~~~~~~~~~i~n~s~g~~~------~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~ 184 (279)
T d2pwaa1 111 MDFVASDKNNRNCPKGVVASLSLGGGY------SSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASD 184 (279)
T ss_dssp HHHHHHHGGGSCCTTEEEEEECCCEEC------CHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEEC
T ss_pred hheecccccccccccccceeccCCCcc------ccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEe
Confidence 99988653 469999999763 356677778889999999999999998 445677889999999743
Q ss_pred CCccceeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHH
Q 004205 351 TDRDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKL 430 (768)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~ 430 (768)
T Consensus 185 -------------------------------------------------------------------------------- 184 (279)
T d2pwaa1 185 -------------------------------------------------------------------------------- 184 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCC
Q 004205 431 RKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGP 510 (768)
Q Consensus 431 ~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp 510 (768)
..+.++.||++||
T Consensus 185 -------------------------------------------------------------------~~g~~~~~S~~G~ 197 (279)
T d2pwaa1 185 -------------------------------------------------------------------RYDRRSSFSNYGS 197 (279)
T ss_dssp -------------------------------------------------------------------TTSBBCTTCCBST
T ss_pred -------------------------------------------------------------------ecCCCccccCCCC
Confidence 2256889999999
Q ss_pred CCCCCCcccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCC
Q 004205 511 NALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHK 590 (768)
Q Consensus 511 ~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~ 590 (768)
.. ||+|||.+|+++++. +.|..++|||||||+|||++|||+|++|.++++++|. |++||++.
T Consensus 198 ~~--------dv~APG~~i~s~~~~----~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~----- 259 (279)
T d2pwaa1 198 VL--------DIFGPGTDILSTWIG----GSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKG----- 259 (279)
T ss_dssp TC--------CEEEECSSEEEEETT----TEEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEES-----
T ss_pred cc--------ccccccccccccccC----CcccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCC-----
Confidence 86 999999999999874 5699999999999999999999999999999887775 77888752
Q ss_pred CccCCCCCCCCCCCcccccccCc
Q 004205 591 PITVDPKGRRGNAFDYGSGFLNP 613 (768)
Q Consensus 591 p~~~~~~~~~~~~~~~G~G~vn~ 613 (768)
.....|+|++|+
T Consensus 260 -----------~~~~~g~g~~n~ 271 (279)
T d2pwaa1 260 -----------DLSNIPFGTVNL 271 (279)
T ss_dssp -----------CCBSCCTTSCCE
T ss_pred -----------CCCCCCCCChhh
Confidence 123579999886
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=2.7e-41 Score=361.53 Aligned_cols=288 Identities=25% Similarity=0.290 Sum_probs=216.6
Q ss_pred CCCcCCC-CCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCcccccccc
Q 004205 133 SMEIPGF-STKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIV 211 (768)
Q Consensus 133 ~~~~~~~-~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~ 211 (768)
++.+|.. +++| +||+|||||||||++||+|.... .| ..++...+.+...
T Consensus 10 ~~~~~~~~G~tG-~Gv~VaIiDsGi~~~h~~~~~~~----------------~~-----~~~~~~~~~~~~~-------- 59 (318)
T d1wmda2 10 ADVAQSSYGLYG-QGQIVAVADTGLDTGRNDSSMHE----------------AF-----RGKITALYALGRT-------- 59 (318)
T ss_dssp HHHHHHHHCCSC-TTCEEEEEESCCTTSCSSTTSCT----------------TT-----TTCEEEEEETTTT--------
T ss_pred chhHHHccCccc-cCeEEEEEcCCcCCCCcccccCc----------------cc-----CCcEEeecCCCCC--------
Confidence 3477775 9999 99999999999999999996421 01 2234444443322
Q ss_pred ccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC---CCHHHHHHHHHHHHHcCC
Q 004205 212 ETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG---CYDVDLLAAFDDAIRDGV 288 (768)
Q Consensus 212 ~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g---~~~~~i~~ai~~a~~~g~ 288 (768)
.++.|..||||||||||+|+... ..||||+|+|+.+|+++..+ .....+..+++++...++
T Consensus 60 -----~~~~d~~gHGT~vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (318)
T d1wmda2 60 -----NNANDTNGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGA 123 (318)
T ss_dssp -----TCCCCSSSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTC
T ss_pred -----CCCCCCCCCCccceeeccccccc-----------cchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCC
Confidence 34567899999999999987522 28999999999999998655 334557889999999999
Q ss_pred cEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CC--CcccCCCceEEEcccCCCccceeeEEeCCCc
Q 004205 289 HILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EG--SVTNLAPWMFTIAASSTDRDFTSEIVLGDGA 365 (768)
Q Consensus 289 dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~--~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~ 365 (768)
+|+|+|||..... ........+.+.+.+.++++|+|+||.|. .. ..++..+.++++.+........
T Consensus 124 ~i~~~S~g~~~~~--~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------- 192 (318)
T d1wmda2 124 RIHTNSWGAAVNG--AYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF--------- 192 (318)
T ss_dssp SEEEECCCBCCTT--CCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG---------
T ss_pred ceeeccccccccc--ccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCccccc---------
Confidence 9999999987522 33445555666778999999999999997 33 3344567777777643221000
Q ss_pred eEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEE
Q 004205 366 NFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMI 445 (768)
Q Consensus 366 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i 445 (768)
.
T Consensus 193 --------------~----------------------------------------------------------------- 193 (318)
T d1wmda2 193 --------------G----------------------------------------------------------------- 193 (318)
T ss_dssp --------------C-----------------------------------------------------------------
T ss_pred --------------c-----------------------------------------------------------------
Confidence 0
Q ss_pred EEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeC
Q 004205 446 LVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAP 525 (768)
Q Consensus 446 ~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 525 (768)
........+..+|++||.. +...|||++||
T Consensus 194 ------------------------------------------------~~~~~~~~~~~~s~~G~~~--~~~~~~~~~a~ 223 (318)
T d1wmda2 194 ------------------------------------------------SYADNINHVAQFSSRGPTK--DGRIKPDVMAP 223 (318)
T ss_dssp ------------------------------------------------GGGSCTTSBCTTSCCCCCT--TSCCCCCEEEE
T ss_pred ------------------------------------------------cccccccccccccccCCCc--CCCcccceeec
Confidence 0011234577899999987 67899999999
Q ss_pred CceEEEEecCCC--------CCcceEEeccccchhHHHHHHHHHHHHhC-----CCCCHHHHHHHHHhhcccccCCCCCc
Q 004205 526 GLNIIAAWSPAV--------GKMQFNILSGTSMACPHVTGIATLIKAVH-----PSWSPSAIKSAIMTTATALDKNHKPI 592 (768)
Q Consensus 526 G~~I~Sa~~~~~--------~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p~lsp~~ik~~L~~TA~~~~~~g~p~ 592 (768)
|.+|+++..... ....|..++|||||||+|||++|||+|++ +.++|.+||++|++||+++.
T Consensus 224 G~~i~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~------ 297 (318)
T d1wmda2 224 GTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG------ 297 (318)
T ss_dssp CSSEEEECCTTCCGGGSSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCS------
T ss_pred CceEEeccccccccCccccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCC------
Confidence 999999876431 13457889999999999999999999974 45789999999999999653
Q ss_pred cCCCCCCCCCCCcccccccCccccCC
Q 004205 593 TVDPKGRRGNAFDYGSGFLNPRKVLS 618 (768)
Q Consensus 593 ~~~~~~~~~~~~~~G~G~vn~~~Al~ 618 (768)
...+...||||+||+.+||+
T Consensus 298 ------~~~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 298 ------LGYPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp ------SCSSCTTTTTCBCCHHHHHT
T ss_pred ------CCCCCCCeeeceecHHHHhC
Confidence 23456689999999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.3e-39 Score=347.51 Aligned_cols=287 Identities=18% Similarity=0.200 Sum_probs=192.9
Q ss_pred cCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccc
Q 004205 131 EESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDI 210 (768)
Q Consensus 131 ~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~ 210 (768)
++++++|+.+.+| +||+|||||||||++||+|.+.. ..+..| .+.+. ..
T Consensus 24 in~~~aw~~g~~G-~gv~VaViDtGv~~~Hpdl~~~~------------~~~~~~-------------~~~~~-~~---- 72 (334)
T d1p8ja2 24 LNVKEAWAQGFTG-HGIVVSILDDGIEKNHPDLAGNY------------DPGASF-------------DVNDQ-DP---- 72 (334)
T ss_dssp CCCHHHHHTTCSC-TTCEEEEEEBCCCTTCTTTGGGB------------CGGGCE-------------ETTTT-BS----
T ss_pred CCHHHHHhcCCCC-CCeEEEEEccCCCCCChhHhhcc------------ccCCCc-------------cccCC-CC----
Confidence 5677899999999 99999999999999999997421 000000 11110 00
Q ss_pred cccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHH-cCCc
Q 004205 211 VETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIR-DGVH 289 (768)
Q Consensus 211 ~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~-~g~d 289 (768)
...+.....|..+|||||||||+|...++. ...|+||+|+++.+|++.. ...+.+.++.++++ ++++
T Consensus 73 -~~~~~~~~~~~~gHGT~vAgiia~~~~n~~--------~~~g~a~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 140 (334)
T d1p8ja2 73 -DPQPRYTQMNDNRHGTRCAGEVAAVANNGV--------CGVGVAYNARIGGVRMLDG---EVTDAVEARSLGLNPNHIH 140 (334)
T ss_dssp -CCCCCCCTTCTTCHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECSSS---CCCHHHHHHHHTSCTTTCC
T ss_pred -ccccccccccCccchhhhhhhhhhcccccc--------ccccccccccccchhhccc---cccchHHHHHHHhhhcCCc
Confidence 011123455789999999999999765432 2378999999999999753 33455667777765 6799
Q ss_pred EEEeccCCCCCCCCC---c----hhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcc----cCCCceEEEcccCCCcccee
Q 004205 290 ILSLSLGPEAPQGDY---F----SDAISIGSFHATSRGILVVASAGNEGN-EGSVT----NLAPWMFTIAASSTDRDFTS 357 (768)
Q Consensus 290 VIN~SlG~~~~~~~~---~----~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~----~~~p~vitVgAs~~~~~~~~ 357 (768)
++|||||........ . ...+..+...+..+|+++|+||||++. ..... ...+.+++|++.+
T Consensus 141 ~~n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~------- 213 (334)
T d1p8ja2 141 IYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT------- 213 (334)
T ss_dssp EEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEEC-------
T ss_pred EEeCCCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCccccccccccccccccc-------
Confidence 999999976521111 0 122333445566899999999999876 22111 1233445554422
Q ss_pred eEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHH
Q 004205 358 EIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVK 437 (768)
Q Consensus 358 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~ 437 (768)
T Consensus 214 -------------------------------------------------------------------------------- 213 (334)
T d1p8ja2 214 -------------------------------------------------------------------------------- 213 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCc
Q 004205 438 EAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEI 517 (768)
Q Consensus 438 ~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~ 517 (768)
..+..+.||++|+...
T Consensus 214 ------------------------------------------------------------~~g~~~~~s~~~~~~~---- 229 (334)
T d1p8ja2 214 ------------------------------------------------------------QFGNVPWYSEACSSTL---- 229 (334)
T ss_dssp ------------------------------------------------------------TTSCCCTTCCBCTTCC----
T ss_pred ------------------------------------------------------------cCCceeeecccCCccc----
Confidence 2244556666665541
Q ss_pred ccCceeeCCc-----eEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCc
Q 004205 518 LKPDVTAPGL-----NIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPI 592 (768)
Q Consensus 518 ~KPDI~APG~-----~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~ 592 (768)
.+..+||. .+.+.. ....|..++|||||||+|||++|||+|++|+|++.|||++|++||++.+..+..+
T Consensus 230 --~~~~~~~~~~~~~~~~~~~----~~~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~~~~ 303 (334)
T d1p8ja2 230 --ATTYSSGNQNEKQIVTTDL----RQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDW 303 (334)
T ss_dssp --EEEECCCSTTSCCEEEEET----TTEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCC
T ss_pred --ccccccccccccccccccc----CCccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCccc
Confidence 13334432 344432 2356899999999999999999999999999999999999999999765444333
Q ss_pred cCCCCCCCCCCCcccccccCccccCC
Q 004205 593 TVDPKGRRGNAFDYGSGFLNPRKVLS 618 (768)
Q Consensus 593 ~~~~~~~~~~~~~~G~G~vn~~~Al~ 618 (768)
... .........||+|+||+++||+
T Consensus 304 ~~~-~~~~~~~~~~G~G~lna~~Av~ 328 (334)
T d1p8ja2 304 ATN-GVGRKVSHSYGYGLLDAGAMVA 328 (334)
T ss_dssp EEC-TTSCEEBTTTBTCBCCHHHHHH
T ss_pred ccc-CCCcccCCCCcceEeCHHHHHH
Confidence 222 2233345688999999999997
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.1e-39 Score=349.88 Aligned_cols=290 Identities=18% Similarity=0.161 Sum_probs=204.0
Q ss_pred cCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccc
Q 004205 131 EESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDI 210 (768)
Q Consensus 131 ~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~ 210 (768)
+++..+|.++++| +||+|||||||||++||+|.+.-.. .+.+.|.+...
T Consensus 33 in~~~aw~~g~~G-~gv~VaViDtGid~~Hp~l~~~~~~-------------------------~~~~~~~~~~~----- 81 (339)
T d2id4a2 33 INVLDLWYNNITG-AGVVAAIVDDGLDYENEDLKDNFCA-------------------------EGSWDFNDNTN----- 81 (339)
T ss_dssp CCCHHHHHTTCSC-TTCEEEEEESCCCTTSTTTTTTBCG-------------------------GGCEETTTTBS-----
T ss_pred cCHHHHHhcCCCC-CCcEEEEECcCcCCCChHHhcCccc-------------------------ccccccccCCC-----
Confidence 5677899999999 9999999999999999999753110 01123332211
Q ss_pred cccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHHcCCcE
Q 004205 211 VETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHI 290 (768)
Q Consensus 211 ~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~~g~dV 290 (768)
......+..+|||||||+|+|....+. .+.||||+|+|+.++++.. .....++..++.++++. .+|
T Consensus 82 ----~~~~~~~~~~HGT~vag~iaa~~~~~~--------~~~Gvap~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~v 147 (339)
T d2id4a2 82 ----LPKPRLSDDYHGTRCAGEIAAKKGNNF--------CGVGVGYNAKISGIRILSG-DITTEDEAASLIYGLDV-NDI 147 (339)
T ss_dssp ----CCCCCSTTTTHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECTTS-CCCHHHHHHHTTTTTTT-CSE
T ss_pred ----ccCCCcccccccceeeecccccccccc--------cccccccccccceEEEeec-cccchHHHHHHHHHHhh-CCE
Confidence 112345678999999999998764332 2489999999999999753 36677788888877665 489
Q ss_pred EEeccCCCCCCCCC------chhH-HHHHHHHhhcCCcEEEEeccCCCC-CCC--ccc--CCCceEEEcccCCCccceee
Q 004205 291 LSLSLGPEAPQGDY------FSDA-ISIGSFHATSRGILVVASAGNEGN-EGS--VTN--LAPWMFTIAASSTDRDFTSE 358 (768)
Q Consensus 291 IN~SlG~~~~~~~~------~~~~-~~~a~~~a~~~Gi~vV~AAGN~g~-~~~--~~~--~~p~vitVgAs~~~~~~~~~ 358 (768)
+|+|+|........ .... ...+...+..+|+++|+||||.+. ... .+. ..+.+++|+++
T Consensus 148 ~~~s~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~--------- 218 (339)
T d2id4a2 148 YSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAI--------- 218 (339)
T ss_dssp EEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEE---------
T ss_pred EeccCCCCCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCccccccccccccccccccc---------
Confidence 99999975421111 1112 223444556899999999999875 211 111 22333333322
Q ss_pred EEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHH
Q 004205 359 IVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKE 438 (768)
Q Consensus 359 ~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~ 438 (768)
T Consensus 219 -------------------------------------------------------------------------------- 218 (339)
T d2id4a2 219 -------------------------------------------------------------------------------- 218 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcc
Q 004205 439 AGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEIL 518 (768)
Q Consensus 439 ~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~ 518 (768)
...+..+.||++|+.. ..
T Consensus 219 ----------------------------------------------------------~~~g~~~~~s~~~~~~----~~ 236 (339)
T d2id4a2 219 ----------------------------------------------------------DHKDLHPPYSEGCSAV----MA 236 (339)
T ss_dssp ----------------------------------------------------------CTTSCCCTTCCCCTTE----EE
T ss_pred ----------------------------------------------------------cccccccccccccCcc----ce
Confidence 1235566777777653 45
Q ss_pred cCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCC
Q 004205 519 KPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKG 598 (768)
Q Consensus 519 KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~ 598 (768)
.++..+||..+.++... +..|..++|||||||||||++|||+|++|+|++.|||.+|++||++++..+.+.......
T Consensus 237 ~~~~~~~g~~~~s~~~~---~~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~~~ 313 (339)
T d2id4a2 237 VTYSSGSGEYIHSSDIN---GRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAM 313 (339)
T ss_dssp EEECSBTTBCEEEECST---TCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSS
T ss_pred eeeeeccccccceeccC---CCccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCccccccCC
Confidence 56888899999987653 256889999999999999999999999999999999999999999775432211111123
Q ss_pred CCCCCCcccccccCccccCCC
Q 004205 599 RRGNAFDYGSGFLNPRKVLSP 619 (768)
Q Consensus 599 ~~~~~~~~G~G~vn~~~Al~~ 619 (768)
.......||||+||+.+||+.
T Consensus 314 ~~~~~~~~G~G~ln~~~Av~~ 334 (339)
T d2id4a2 314 GKKYSHRYGFGKIDAHKLIEM 334 (339)
T ss_dssp SSEEBTTTBTCBCCHHHHHHH
T ss_pred CCCcCCCccchhhCHHHHHHH
Confidence 344566799999999999974
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=3.8e-31 Score=286.39 Aligned_cols=315 Identities=16% Similarity=0.106 Sum_probs=185.2
Q ss_pred CCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCC
Q 004205 138 GFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFR 217 (768)
Q Consensus 138 ~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 217 (768)
.++++| +||+|||||||||++||+|.+. |+. + ++.. ...
T Consensus 18 ~~G~tG-~Gv~VaViDtGvd~~H~dl~~~--------~~~-------~-----------------~~~~--------~~~ 56 (357)
T d1t1ga_ 18 PEGLDG-QGQCIAIIALGGGYDETSLAQY--------FAS-------L-----------------GVSA--------PQV 56 (357)
T ss_dssp CTTCCC-TTCEEEEEESSCCCCHHHHHHH--------HHH-------T-----------------TCCC--------CCE
T ss_pred CCCCCC-CCCEEEEEEcCCCCCcHHHHHH--------Hhh-------c-----------------CCCC--------CCC
Confidence 368899 9999999999999999999521 000 0 0000 001
Q ss_pred CCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHH---cCCcEEEec
Q 004205 218 SPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIR---DGVHILSLS 294 (768)
Q Consensus 218 ~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~---~g~dVIN~S 294 (768)
.+.|.++|+|||+|++++....... ....+.||||+|+|+.+|+.. .......++++++. ++++|||||
T Consensus 57 ~~~~~~g~~~~~~g~~~~~~~~~~~----d~~~~~GvAp~A~i~~~~~~~----~~~~~~~~i~~~~~~~~~~~~Vin~S 128 (357)
T d1t1ga_ 57 VSVSVDGATNQPTGDPNGPDGEVEL----DIEVAGALAPGAKIAVYFAPN----TDAGFLNAITTAVHDPTHKPSIVSIS 128 (357)
T ss_dssp EEEESTTCCCCCCSCTTSTHHHHHH----HHHHHHHHSTTSEEEEEECCS----SHHHHHHHHHHHHHCTTTCCSEEEEC
T ss_pred ceeCCCCCCCCCCCccccccccccC----CcccceeecccCeEEEEeccc----CCCchHHHHHHHHHhhhcCCeEEecc
Confidence 2234668889988888764422110 111348999999999999974 33455666666654 589999999
Q ss_pred cCCCCCC-CCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CC--------CcccCCCceEEEcccCCCccceeeEEeCCC
Q 004205 295 LGPEAPQ-GDYFSDAISIGSFHATSRGILVVASAGNEGN-EG--------SVTNLAPWMFTIAASSTDRDFTSEIVLGDG 364 (768)
Q Consensus 295 lG~~~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~--------~~~~~~p~vitVgAs~~~~~~~~~~~~~~~ 364 (768)
||..... .......+..+...+..+|+++|+|+||+|. .. ..+...+++++|++....... +
T Consensus 129 ~G~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~ 200 (357)
T d1t1ga_ 129 WGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASA--------G 200 (357)
T ss_dssp CCEEGGGSCHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECS--------S
T ss_pred cccCcCccccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCCC--------C
Confidence 9976411 1112345666677788999999999999986 21 223456788888865322110 0
Q ss_pred ceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEE
Q 004205 365 ANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGM 444 (768)
Q Consensus 365 ~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~ 444 (768)
... .++. ....... ......+.
T Consensus 201 ~~~-~~~~-----~~~~~~~-----------~~~~~g~s----------------------------------------- 222 (357)
T d1t1ga_ 201 RIE-RETV-----WNDGPDG-----------GSTGGGVS----------------------------------------- 222 (357)
T ss_dssp CEE-EEEE-----CBCHHHH-----------CBCCCEEC-----------------------------------------
T ss_pred ccc-ccee-----ccccccc-----------ccccCCcc-----------------------------------------
Confidence 000 0000 0000000 00000000
Q ss_pred EEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceee
Q 004205 445 ILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTA 524 (768)
Q Consensus 445 i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~A 524 (768)
.... ...........+++.+++. .++.|||+.+
T Consensus 223 --------------------------------------------~~~~-~p~~~~~~~~~~~~~~~~~--~~~~~pd~~~ 255 (357)
T d1t1ga_ 223 --------------------------------------------RIFP-LPSWQERANVPPSANPGAG--SGRGVPDVAG 255 (357)
T ss_dssp --------------------------------------------SSSC-CCGGGTTSCCCCCSSTTCC--CCCEECSEEE
T ss_pred --------------------------------------------cccc-cCcccccccccccccCCCC--CCceecceec
Confidence 0000 0011224456677777776 7999999999
Q ss_pred CCceE--EEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCC---CCHHHHHHHHHhhcccccCCCCCccCC---C
Q 004205 525 PGLNI--IAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPS---WSPSAIKSAIMTTATALDKNHKPITVD---P 596 (768)
Q Consensus 525 PG~~I--~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~---lsp~~ik~~L~~TA~~~~~~g~p~~~~---~ 596 (768)
++... .++... +.|..++|||||||||||++|||+|+++. +...+++++...+.+++...-...... .
T Consensus 256 ~~~~~~~~~~~~~----~~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g~~~~~~~~~~~ 331 (357)
T d1t1ga_ 256 NADPATGYEVVID----GETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNNDIANRARIY 331 (357)
T ss_dssp ECCTTEEEEEEET----TEEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSCBCCCSSSSCCS
T ss_pred ccCCCCceEEecC----CceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccceecccccCCCCCCCCCcc
Confidence 86554 444442 56999999999999999999999998643 233444443333333221000000000 0
Q ss_pred CCCCCCCCcccccccCccccCC
Q 004205 597 KGRRGNAFDYGSGFLNPRKVLS 618 (768)
Q Consensus 597 ~~~~~~~~~~G~G~vn~~~Al~ 618 (768)
...+.++..+|+|++|+.++++
T Consensus 332 ~a~~G~d~~tG~G~~n~~~~~~ 353 (357)
T d1t1ga_ 332 QAGPGWDPCTGLGSPIGIRLLQ 353 (357)
T ss_dssp BCCSSSBTTTBTCEECHHHHHH
T ss_pred cCccCCCCCccCchhhHHHHHH
Confidence 1244567789999999988775
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=1.1e-28 Score=268.83 Aligned_cols=121 Identities=19% Similarity=0.155 Sum_probs=93.3
Q ss_pred CCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHc-CCcEEEeccCCC
Q 004205 221 DSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRD-GVHILSLSLGPE 298 (768)
Q Consensus 221 D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~-g~dVIN~SlG~~ 298 (768)
+..+||||+++++.+.... ..+.||||+|+|+.+|++.+.+ ....+++++|+||+++ +++|||+|||..
T Consensus 66 ~~~~~~~~~~~~~e~~ld~---------~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~ 136 (369)
T d1ga6a_ 66 SNGDYSDDQQGQGEWDLDS---------QSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWC 136 (369)
T ss_dssp TTSCCCBCHHHHHHHHHHH---------HHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEE
T ss_pred CCCCCCCCCCcceeecccc---------ccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeecccccc
Confidence 4678999999998765422 1248999999999999998766 6678899999999965 799999999975
Q ss_pred CC--CCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CC-------------CcccCCCceEEEcccC
Q 004205 299 AP--QGDYFSDAISIGSFHATSRGILVVASAGNEGN-EG-------------SVTNLAPWMFTIAASS 350 (768)
Q Consensus 299 ~~--~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~-------------~~~~~~p~vitVgAs~ 350 (768)
.. ......+.+..++.++..+||+||+||||+|. .. ..++..+++++|+++.
T Consensus 137 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~ 204 (369)
T d1ga6a_ 137 EADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT 204 (369)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred ccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence 31 11134456777888889999999999999986 21 2345677889998754
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.78 E-value=8.6e-09 Score=81.77 Aligned_cols=70 Identities=17% Similarity=0.169 Sum_probs=55.3
Q ss_pred CcEEEEEeCCCCCCCCchhhHhHHHHHHHHhcCcccccccceEEEecceeeEEEEEeCHHHHHHHhcCCCeEEEEeccee
Q 004205 36 AKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNMKR 115 (768)
Q Consensus 36 ~~~yiV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~V~~~~~~ 115 (768)
.++|||+||+..... ....+.++++ ..+.++.+.|+ .||||++++++++++.|+++|+|.+||+|+.+
T Consensus 1 e~~YIV~fK~~~~~~---~~~~~~~~v~--------~~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~ 68 (71)
T d1scjb_ 1 EKKYIVGFKQTMSAM---SSAKKKDVIS--------QKGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIA 68 (71)
T ss_dssp CEEEEEEECSSSSCC---SHHHHHHHHH--------TTTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEE
T ss_pred CCcEEEEECCCCChH---HHHHHHHHHH--------HcCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEE
Confidence 478999999985332 2333433333 34578999998 79999999999999999999999999999987
Q ss_pred cc
Q 004205 116 RL 117 (768)
Q Consensus 116 ~~ 117 (768)
+.
T Consensus 69 ~a 70 (71)
T d1scjb_ 69 HE 70 (71)
T ss_dssp EE
T ss_pred Ec
Confidence 64
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.74 E-value=2e-08 Score=79.82 Aligned_cols=67 Identities=21% Similarity=0.351 Sum_probs=51.3
Q ss_pred CcEEEEEeCCCCCCCCchhhHhHHHHHHHHhcCcccccccceEEEec-ceeeEEEEEeCHHHHHHHhcCCC--eEEEEec
Q 004205 36 AKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQAQASHVYSYK-HGFRGFAAKLTDQQASQIAQMPG--VVSVFPN 112 (768)
Q Consensus 36 ~~~yiV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~-~~~~g~s~~~~~~~~~~L~~~p~--V~~V~~~ 112 (768)
.++|||+||+... ....+.|..+++.. ...+.+.|. +.|+||+++++++.+++|+++|. |.+||+|
T Consensus 2 aG~YIVvlK~~~~---~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D 70 (72)
T d1v5ib1 2 AGKFIVIFKNDVS---EDKIRETKDEVIAE--------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED 70 (72)
T ss_dssp CEEEEEEECTTCC---HHHHHHHHHHHHHH--------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred CccEEEEECCCCC---HHHHHHHHHHHHhc--------CCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCC
Confidence 5899999999752 22444555555443 345667777 68999999999999999999665 9999998
Q ss_pred c
Q 004205 113 M 113 (768)
Q Consensus 113 ~ 113 (768)
.
T Consensus 71 ~ 71 (72)
T d1v5ib1 71 H 71 (72)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.72 E-value=0.00055 Score=63.71 Aligned_cols=79 Identities=11% Similarity=0.239 Sum_probs=59.8
Q ss_pred ccCCccCcCCCC--CCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC--------------C--Cc--
Q 004205 397 YQSSYCLESSLN--STKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD--------------V--AI-- 456 (768)
Q Consensus 397 ~~~~~c~~~~~~--~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~--------------~--~~-- 456 (768)
++...|...+++ ..+++|||+|++ +|.+.+.+|+.+++.+||.|+|+|.+.... . .+
T Consensus 44 Vy~n~G~~~Df~~L~~~v~GkI~l~r---~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPl 120 (193)
T d1de4c2 44 VHANFGTKKDFEDLYTPVNGSIVIVR---AGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPY 120 (193)
T ss_dssp EECSTTCHHHHHTCSSCCTTSEEEEE---SCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTT
T ss_pred EEccCCCHHHHHHhccccCceEEEEe---CCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCC
Confidence 444455544433 367999999999 678999999999999999999999865432 0 00
Q ss_pred -------------------cceeeEEEechhhHHHHHHHHh
Q 004205 457 -------------------PFVIPSAVVGKKTGNKILSYIS 478 (768)
Q Consensus 457 -------------------~~~~p~~~i~~~~g~~l~~~~~ 478 (768)
--.||+.-|+..|++.|+..+.
T Consensus 121 TPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 121 TPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp STTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred CCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence 0137899999999999998774
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.13 E-value=0.025 Score=46.97 Aligned_cols=90 Identities=11% Similarity=0.041 Sum_probs=60.0
Q ss_pred CCCCeEEecCCCccEEEEEEEEecCCCcee-EEEEEeCCCceEEEEecCEEEEcCCCeEEEEEEEEEecCC-CCceEEEE
Q 004205 664 LNYPSITVPNLKGNFSVTRSVTNVGKPRSI-YKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLTSP-PKGYGFGY 741 (768)
Q Consensus 664 ln~ps~~~~~~~~~~t~~~tv~N~~~~~~t-y~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~-~~~~~~G~ 741 (768)
+..|++.+.- ....+++++|+|.|....+ -.+.+..|.|=+++ +....+ ++||+++++++++++.. ..+.|.=.
T Consensus 6 ~t~p~~~v~p-G~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~--~~~~~L-~pG~s~~~~~~Vt~p~~a~~G~Y~i~ 81 (103)
T d1w8oa1 6 FTIPDVALEP-GQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQ--GSVEPL-MPGRQAKGQVTITVPAGTTPGRYRVG 81 (103)
T ss_dssp EECCCEEECT-TCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEE--EEECCB-CTTCEEEEEEEEECCTTCCCEEEEEE
T ss_pred ccCcceeeCC-CCeEEEEEEEEeCCCCceeeeeEEEcCCCCcccc--Ccceee-CCCCcEEEEEEEECCCCCCCceEEEE
Confidence 3445655522 4678999999999987654 56777889996654 555556 78999999999997632 33444445
Q ss_pred EEEEcCceEEEEEEEE
Q 004205 742 LSWKNGKLRVTSPLVV 757 (768)
Q Consensus 742 i~~~~~~~~v~~P~~~ 757 (768)
+..+.+.......|.+
T Consensus 82 ~~a~~~~~~~s~t~tv 97 (103)
T d1w8oa1 82 ATLRTSAGNASTTFTV 97 (103)
T ss_dssp EEEEETTEEEEEEEEE
T ss_pred EEEEeCCcceEEEEEE
Confidence 6666665544444443
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.71 E-value=0.026 Score=53.73 Aligned_cols=53 Identities=21% Similarity=0.301 Sum_probs=43.3
Q ss_pred CcccCCccCcCCCC------CCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCC
Q 004205 395 TPYQSSYCLESSLN------STKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEP 450 (768)
Q Consensus 395 ~~~~~~~c~~~~~~------~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~ 450 (768)
..++...|...++. ..+++|||+|++ +|.+.+.+|+.+|+.+||.|+|+|++.
T Consensus 56 ~~VyvnyG~~~Df~~L~~~~gi~~~gkIvl~r---yG~~~~~~Kv~~A~~~GA~GviiysDP 114 (233)
T d3bi1a2 56 DLVYVNYARTEDFFKLERDMKINCSGKIVIAR---YGKVFRGNKVKNAQLAGAKGVILYSDP 114 (233)
T ss_dssp CEEECTTCCHHHHHHHHHTSCCCCTTCEEEEE---CCSSCHHHHHHHHHHTTCSEEEEECCH
T ss_pred EEEEecCCcHHHHHHHHHhcCCcccceEEEEe---CCCCchhHHHHHHHHcCceEEEEecCh
Confidence 34556666665542 468999999999 578899999999999999999999874
|