Citrus Sinensis ID: 004207

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------77
Protein Sequence
MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK
Secondary Structure (PSIPRED)
cccccHHHHcHHHHHHHHHHHHccHHHHHHHHHHccccccccEEEEccccEEEHHHHHHHHHHHHHHcccccHHcccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHccccccccEEccccccHHHHHHHHccccccccccccccccccccccccccccEEEcccccccccccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHcccccccccccccccccccEEEcccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEEccccEEEEEEcccccEEEEEEEcccEEEcccccccEEEcccccccccccccccccccccccccccEEEEEcccccEEEEEEccccEEEEEcccccEEccccEEEEEcccEEEEEEcccccccccccccEEEccccccccccEEEccccccEEEEEEcccccEEEEEcccccEEEEEccccccccccccccccEEEEEEcccccEEEEEcccccEEEEEcccccccccccccccccEEEEEEccccccEEEEEcccccEEEEEcccccEEEEEEccccEEEEEEEccccEEEEEEcccEEEEEEcccccccccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEccccEEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccHcccccHHHHHHHccccccccccEEEcccccHHHHHHHcccccccccccccccccccccccccccccEEEccccccccccccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHccccccccccccHcccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccEEEcccccEcccccccEEEEEccccEEEEEccHcccccccEEEEccccccEEEEEccccccccccEEEEEEccccccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEccccEEEEEEcccccccccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEcc
Coil and Loop (DISEMBL)
msqnnweadKMLDVYIYDYLLKRKLHASAKAFQtegkvstdpvaidapggfLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTqhlndtgddlrpgfAKAFTTKMYEDRlkklpfqrdslddatikprlsdnmtqlldpNHATLLKAaaigsqpsgqtlhgthgvsqqvqsrsqqpplstqevktemnptmnpraagsegsligvhgsnqgagnvtlkgwpltgldqfRSGLLQQQKSLTQPYNQLQLQQLMLQAQQnlaspsandlesRKLRMLHnsrnmglardgssnsvgDLVSTVGSAmqiispglprgdndLLIKIQQQQQQLqhyshhplssqqsqnsnpllQQQDkilaggsmtmdgsmsntfqgndqasknqigrkrkqavsssgpanssgtantpgptpsspsspsthtpgdvisrptlqhngassksllmfgsdgmgsltsapnqltdmdrfvddgslddnvesflspddadprdrvgrsaevgkgftftefqlipastskveschfspdgkllatgghdkkAVLWCTESFTVKSTLEEHTQWitdvrfspslsrlatssadrtvrvwdtenpdyslrtftghsttvmsldfhpskedllcscdnnseirywsinngscagvfkcqsgatqmrfqPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNmtenktltLSAHDKLVSSLAASTVNGMVAsashdkcvkiwk
Flexible Loop (DISEMBL)
msqnnweadkMLDVYIYDYLLKRKLHASAKAFqtegkvstdpvAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDstqhlndtgddlrpGFAKAFTTKMYedrlkklpfqrdslddatikPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVSQqvqsrsqqpplstQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRnmglardgssnsVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQavsssgpanssgtantpgptpsspsspSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVEsflspddadprdrVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTqwitdvrfspslsrlatssadrtvrvwdtenpdyslrtftGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNgmvasashdkcvkiwk
Low Complexity Region (SEG)
MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREqqqqqqqqhqkpqqhqqmqvqqlllqrhaqqqqqqqrrDSTQHLNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGvsqqvqsrsqqPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYnqlqlqqlmlqaqqnlaSPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIqqqqqqlqhyshhplssqqsqnsnpllqqqDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANssgtantpgptpsspsspsthtpgDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK
Disordered region (IsUnstruct)
*******ADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIART**********************************************************************************************************************************************************************************************AGNVTLKGWPLTGLDQFRSGLL************************************************************************************LI******************************************************************************************************************************************************************************GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA*****KCVK***
Disordered Region (DISOPRED)
********DKMLDVYIYDYLLKRKLHASAKA*****KVSTDPVAIDAPGGFLFEWWSVFWDIFI********************************************************************************KAFTTKMYEDR**************************LL************************************************************************QGAGNVTLKGWPLTGLDQFRS***************************************RKLRMLHNSRN*********NSVGDLVSTV**********************************************************GSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK
Disordered Region (DISEMBL)
MSQNNWEADKMLDVYIYDYLLKRKLHASAKA********TDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQ*************************************************LNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPS*******************************MNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKI*************************LLQQQDKILAGGSMTMDGSMSNTFQG***********************************************GDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK
Disordered Region (DISPRO)
****NWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQ***************A*********************LRPGFAKA*****YEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAI****S*Q******GVSQQVQSRSQQP*LSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLA*****DLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQ******************************************************************************************TPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	768	2.2.26 [Sep-21-2011]
Q9FUY2	931	Transcriptional corepress	yes	no	0.807	0.665	0.538	0.0
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.279	0.140	0.330	2e-23
Q00808	1356	Vegetative incompatibilit	yes	no	0.261	0.148	0.318	1e-20
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.261	0.119	0.292	2e-19
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.259	0.158	0.312	1e-18
Q7ZUV2	694	Katanin p80 WD40 repeat-c	no	no	0.266	0.295	0.296	6e-17
Q8BG40	658	Katanin p80 WD40 repeat-c	yes	no	0.236	0.276	0.290	2e-16
Q6NVM2	655	Katanin p80 WD40 repeat-c	yes	no	0.236	0.277	0.300	2e-16
Q4V7Y7	655	Katanin p80 WD40 repeat-c	N/A	no	0.236	0.277	0.300	2e-16
Q9BVA0	655	Katanin p80 WD40 repeat-c	yes	no	0.236	0.277	0.290	2e-16

>sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/683 (53%), Positives = 469/683 (68%), Gaps = 63/683 (9%)

Query: 125 RRDSTQHLNDTGDDL-----------RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKP 173
           RRD +   N + + L            PG   +  +K YE+R+K +P QR+SLD+A +K 
Sbjct: 185 RRDGSHLANGSANGLVGNNSEPVMRQNPGSGSSLASKAYEERVK-MPTQRESLDEAAMK- 242

Query: 174 RLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHG-VSQQVQSRSQQPPLSTQEVKTE 232
           R  DN+ QLLDP+HA++LK+AA   QP+GQ LH T G +S QVQ+R+QQ P S  ++K+E
Sbjct: 243 RFGDNVGQLLDPSHASILKSAAASGQPAGQVLHSTSGGMSPQVQTRNQQLPGSAVDIKSE 302

Query: 233 MNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSL--TQPYN 290
           +NP + PR A  EGSLIG+ GSNQG+ N+TLKGWPLTG DQ RSGLLQQQK    +Q ++
Sbjct: 303 INPVLTPRTAVPEGSLIGIPGSNQGSNNLTLKGWPLTGFDQLRSGLLQQQKPFMQSQSFH 362

Query: 291 QLQL------QQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
           QL +      QQLML AQQNL S S ++ E+R+L+ML N+R+M L +DG  +SVGD++  
Sbjct: 363 QLNMLTPQHQQQLML-AQQNLNSQSVSE-ENRRLKMLLNNRSMTLGKDGLGSSVGDVLPN 420

Query: 345 VGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHH-------------------PLSSQ 385
           VGS++Q     LPRGD D+L+K++    Q Q  +                      L++ 
Sbjct: 421 VGSSLQPGGSLLPRGDTDMLLKLKMALLQQQQQNQQQGGGNPPQPQPQPQPLNQLALTNP 480

Query: 386 QSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSG 445
           Q Q+SN  + QQ+K+  GGS+TMDGS+SN+F+GN+Q  KNQ GRKRKQ VSSSGPANSSG
Sbjct: 481 QPQSSNHSIHQQEKLGGGGSITMDGSISNSFRGNEQVLKNQSGRKRKQPVSSSGPANSSG 540

Query: 446 TANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTD 504
           TANT GP+PSS  S  + HTPGDVIS P L H+G SSKS++MFG++G G+LTS  NQL D
Sbjct: 541 TANTAGPSPSSAPSTPSTHTPGDVISMPNLPHSGGSSKSMMMFGTEGTGTLTSPSNQLAD 600

Query: 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS 564
           MDRFV+DGSLDDNVESFLS +D D RD V R  +V KGFTFTE   + AST+KV  CHFS
Sbjct: 601 MDRFVEDGSLDDNVESFLSQEDGDQRDAVTRCMDVSKGFTFTEVNSVRASTTKVTCCHFS 660

Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
            DGK+LA+ GHDKKAVLW T++   K+TLEEHT  ITD+RFSPS  RLATSS D+TVRVW
Sbjct: 661 SDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVW 720

Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG 684
           D +N  YSLRTF GHS+ V SLDFHP K+DL+CSCDN++EIRYWSINNGSC  V+K   G
Sbjct: 721 DADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCTRVYK--GG 778

Query: 685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVS 744
           +TQ+RFQPR+G+ LAA+  N +++LDVETQ  R  LQ                 H   ++
Sbjct: 779 STQIRFQPRVGKYLAASSANLVNVLDVETQAIRHSLQ----------------GHANPIN 822

Query: 745 SLAASTVNGMVASASHDKCVKIW 767
           S+        +AS S D  VK+W
Sbjct: 823 SVCWDPSGDFLASVSED-MVKVW 844

Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and SEUSS to repress AGAMOUS expression. Also plays a role in ovule and pollen development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  111 bits (278), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 116/239 (48%), Gaps = 24/239 (10%)

Query: 531  DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK 590
            D+  R  E+        FQ     TS V S  F+PDG +LA+G  DK   LW   S    
Sbjct: 1221 DQTVRLWEINSSKCLCTFQ---GHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCL 1277

Query: 591  STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650
             T + HT W+  V F+P  S LA+ S D+TVR+W+  +    L TF GH++ V S+ F P
Sbjct: 1278 HTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSK-CLHTFQGHTSWVSSVTFSP 1336

Query: 651  SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISIL 709
                +L S  ++  +R WSI++G C   F   +     + F P  G ILA+   +     
Sbjct: 1337 DGT-MLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPD-GAILASGSGD----- 1389

Query: 710  DVETQVCRLKLQTLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
                       QT+ LW+++  K L TL  H+  V S+  S    ++AS S D+ V++W
Sbjct: 1390 -----------QTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLW 1437

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score =  102 bits (253), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 101/220 (45%), Gaps = 19/220 (8%)

Query: 549  QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 608
            Q +      V S  FSPDG+ +A+G  DK   +W T S T   TLE H  W+  V FSP 
Sbjct: 1003 QTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPD 1062

Query: 609  LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
              R+A+ S D T+++WD  +   + +T  GH  +V S+ F P  +  + S   +  I+ W
Sbjct: 1063 GQRVASGSDDHTIKIWDAVSGTCT-QTLEGHGDSVWSVAFSPDGQR-VASGSIDGTIKIW 1120

Query: 669  SINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWN 727
               +G+C    +   G    + F P   R+ + +I+  I I D  +  C           
Sbjct: 1121 DAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTC----------- 1169

Query: 728  MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
                 T TL  H   V S+A S     VAS S DK +KIW
Sbjct: 1170 -----TQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIW 1204

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 109/222 (49%), Gaps = 21/222 (9%)

Query: 548  FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
            F+ +      V S  FSPDG+ +A+GG DK   LW T   T+  T+  H Q + +V FSP
Sbjct: 1106 FRTLNGHEDAVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVYFSP 1165

Query: 608  SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
                LA++S+D ++++WDT +    L T TGHS  V+++ F P  + +    ++ + ++ 
Sbjct: 1166 DGKNLASASSDHSIKLWDTTSGQL-LMTLTGHSAGVITVRFSPDGQTIAAGSEDKT-VKL 1223

Query: 668  WSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
            W   +G         Q     + F P  G+ LA+A  +                +T++LW
Sbjct: 1224 WHRQDGKLLKTLNGHQDWVNSLSFSPD-GKTLASASAD----------------KTIKLW 1266

Query: 727  NMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
             + + K + TL  H+  V  +  S+    +ASAS D  +K+W
Sbjct: 1267 RIADGKLVKTLKGHNDSVWDVNFSSDGKAIASASRDNTIKLW 1308

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 95.5 bits (236), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 25/224 (11%)

Query: 548  FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
            FQ++   T  V +  F P GK++ATG  D    LW   +     TL EH+  I  + +SP
Sbjct: 1013 FQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSP 1072

Query: 608  SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
                LA++SAD++VR+WD       +    GHS  V S  F P+ E ++ +C  +  ++ 
Sbjct: 1073 DGQLLASASADQSVRLWDC-CTGRCVGILRGHSNRVYSAIFSPNGE-IIATCSTDQTVKI 1130

Query: 668  WSINNGSCAGVFKCQSGATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQTLE 724
            W    G C    K  +G T   F       G+ILA+A  +                QT+ 
Sbjct: 1131 WDWQQGKC---LKTLTGHTNWVFDIAFSPDGKILASASHD----------------QTVR 1171

Query: 725  LWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVKIW 767
            +W++   K   +   H  LVSS+A S    +VAS S D+ V+IW
Sbjct: 1172 IWDVNTGKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIW 1215

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q7ZUV2|KTNB1_DANRE Katanin p80 WD40 repeat-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 24/229 (10%)

Query: 544 TFTEFQL--IPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI 600
           T T ++L  I A +S V S       G+LLATGG D +  +W         +L  HT  +
Sbjct: 7   TITSWKLQEIVAHSSNVSSLVLGKSSGRLLATGGEDCRVNIWAVSKPNCIMSLTGHTSAV 66

Query: 601 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660
             ++F+ S  R+   S   ++R+WD E     LRT  GH  ++ SLDFHP  E  L S  
Sbjct: 67  GCIQFNSSEERVVAGSLSGSLRLWDLEAAKI-LRTLMGHKASISSLDFHPMGE-YLASGS 124

Query: 661 NNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLK 719
            +S I+ W +    C   +K  + A + + F P  G+ LA+A ++               
Sbjct: 125 VDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPD-GKWLASASDD--------------- 168

Query: 720 LQTLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
             T++LW++   K +T  ++H   V+ +       ++AS S D+ VK+W
Sbjct: 169 -STVKLWDLIAGKMITEFTSHTSAVNVVQFHPNEYLLASGSADRTVKLW 216

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Danio rerio (taxid: 7955)

>sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 21/203 (10%)

Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626
           G+LLATGG D +  LW         +L  HT  +  VR +     +   S   ++RVWD 
Sbjct: 33  GRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDL 92

Query: 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT 686
           E     LRT  GH   + SLDFHP  E  + S   ++ I+ W I    C   ++  S A 
Sbjct: 93  EAAKI-LRTLMGHKANICSLDFHPYGE-FVASGSQDTNIKLWDIRRKGCVFRYRGHSQAV 150

Query: 687 Q-MRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLT-LSAHDKLVS 744
           + +RF P  G+ LA+A +++                T++LW++T  K ++    H   V+
Sbjct: 151 RCLRFSPD-GKWLASAADDH----------------TVKLWDLTAGKMMSEFPGHTGPVN 193

Query: 745 SLAASTVNGMVASASHDKCVKIW 767
            +       ++AS S D+ ++ W
Sbjct: 194 VVEFHPNEYLLASGSSDRTIRFW 216

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Mus musculus (taxid: 10090)

>sp|Q6NVM2|KTNB1_XENTR Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 97/203 (47%), Gaps = 21/203 (10%)

Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626
           G+L+ATGG D +  LW         +L  HT  +  VRF+ +   +   S   ++RVWD 
Sbjct: 33  GRLVATGGDDCRVNLWSVNKPNCIMSLTGHTTPVESVRFNNAEELIVAGSQSGSLRVWDL 92

Query: 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT 686
           E     LRT  GH   V SLDFHP   D + S   ++ I+ W +    C   +K  + A 
Sbjct: 93  EAAKI-LRTLMGHKANVCSLDFHPYG-DFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAV 150

Query: 687 Q-MRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLT-LSAHDKLVS 744
           + +RF P  G+ LA+A +++                +++LW++T  K +  LS H   V+
Sbjct: 151 RCLRFSPD-GKWLASASDDH----------------SVKLWDLTAGKMMAELSEHKGPVN 193

Query: 745 SLAASTVNGMVASASHDKCVKIW 767
            +       ++AS S D+ V+ W
Sbjct: 194 IIEFHPNEYLLASGSADRTVRFW 216

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Xenopus tropicalis (taxid: 8364)

>sp|Q4V7Y7|KTNB1_XENLA Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 97/203 (47%), Gaps = 21/203 (10%)

Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626
           G+L+ATGG D +  LW         +L  HT  +  VRF+ S   +   S   ++R+WD 
Sbjct: 33  GRLVATGGDDCRVHLWSVNKPNCIMSLTGHTTPVESVRFNNSEELIVAGSQSGSLRIWDL 92

Query: 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT 686
           E     LRT  GH   V SLDFHP  E  + S   ++ I+ W +    C   +K  + A 
Sbjct: 93  EAAKI-LRTLMGHKANVSSLDFHPYGE-FVASGSLDTNIKLWDVRRKGCVFRYKGHTQAV 150

Query: 687 Q-MRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLT-LSAHDKLVS 744
           + +RF P  G+ LA+A +++                +++LW++T  K +  LS H   V+
Sbjct: 151 RCLRFSPD-GKWLASASDDH----------------SVKLWDLTAGKMMAELSEHKGPVN 193

Query: 745 SLAASTVNGMVASASHDKCVKIW 767
            +       ++AS S D+ V+ W
Sbjct: 194 IIEFHPNEYLLASGSADRTVRFW 216

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Xenopus laevis (taxid: 8355)

>sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 21/203 (10%)

Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626
           G+LLATGG D +  LW         +L  HT  +  VR +     +   S   ++RVWD 
Sbjct: 33  GRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDL 92

Query: 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT 686
           E     LRT  GH   + SLDFHP  E  + S   ++ I+ W I    C   ++  S A 
Sbjct: 93  EAAKI-LRTLMGHKANICSLDFHPYGE-FVASGSQDTNIKLWDIRRKGCVFRYRGHSQAV 150

Query: 687 Q-MRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLT-LSAHDKLVS 744
           + +RF P  G+ LA+A +++                T++LW++T  K ++    H   V+
Sbjct: 151 RCLRFSPD-GKWLASAADDH----------------TVKLWDLTAGKMMSEFPGHTGPVN 193

Query: 745 SLAASTVNGMVASASHDKCVKIW 767
            +       ++AS S D+ ++ W
Sbjct: 194 VVEFHPNEYLLASGSSDRTIRFW 216

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	768
297738887	871	unnamed protein product [Vitis vinifera]	0.930	0.820	0.691	0.0
280967728	905	LisH-SSDP-WD40 [Malus x domestica]	0.955	0.811	0.661	0.0
225445366	878	PREDICTED: transcriptional corepressor L	0.930	0.814	0.684	0.0
359484630	883	PREDICTED: transcriptional corepressor L	0.927	0.806	0.677	0.0
147784075	946	hypothetical protein VITISV_002025 [Viti	0.929	0.754	0.655	0.0
356515484	892	PREDICTED: transcriptional corepressor L	0.970	0.835	0.610	0.0
357466351	941	NAD(P)H-quinone oxidoreductase subunit [	0.993	0.810	0.546	0.0
449441952	891	PREDICTED: transcriptional corepressor L	0.966	0.832	0.605	0.0
449441950	900	PREDICTED: transcriptional corepressor L	0.966	0.824	0.599	0.0
449522548	900	PREDICTED: transcriptional corepressor L	0.966	0.824	0.599	0.0

>gi|297738887|emb|CBI28132.3| unnamed protein product [Vitis vinifera]

 Score =  907 bits (2343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/761 (69%), Positives = 586/761 (77%), Gaps = 46/761 (6%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
           DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q  Q   Q+  QQ 
Sbjct: 61  DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120

Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
           Q QQ                  D TQ LN +G+ L          P  A    TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180

Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
           LK LP QRD LDDA +K R  DNM QLL+PNHA+LLK+AA+  QP GQTLHG   G+S  
Sbjct: 181 LK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 238

Query: 213 -QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGL 271
            QQVQSR+QQ  +S+ ++K+EMNP MNPRAAG EGSLIGVHGSNQG  N+TLKGWPLTGL
Sbjct: 239 LQQVQSRNQQLQVSS-DIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGL 297

Query: 272 DQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNM 327
           DQ RSG+LQQ KSL QP    +     QQL+LQAQQNLASPSA+DLE RKLRML NSRN 
Sbjct: 298 DQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN- 356

Query: 328 GLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSH-----HPL 382
            L +DG  N+VGD+V+ VGS MQ+  P LPRGD D+LIK+QQQQ Q  +        HPL
Sbjct: 357 SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKLQQQQLQNSNQQQQQYLQHPL 416

Query: 383 SSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPA 441
           SSQQSQ+SN  LL QQDK++  GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ VSSSGPA
Sbjct: 417 SSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPVSSSGPA 476

Query: 442 NSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPN 500
           NSSGT NT GP+PSS  S  + HTPGDVIS PTL HNG SSKSLLM+GSDGMG+ TSAPN
Sbjct: 477 NSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMGTHTSAPN 536

Query: 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560
           QL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS +  KGF+F+E + I ASTSKVE 
Sbjct: 537 QLADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITASTSKVEC 596

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
           CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RFSPS+ RLATSSAD+T
Sbjct: 597 CHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLATSSADKT 656

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           VRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EIRYWSI NGSC  VFK
Sbjct: 657 VRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNGSCTRVFK 716

Query: 681 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721
              G   MRFQPR GR LAAA E  +SILDVETQ CR KLQ
Sbjct: 717 --GGTNHMRFQPRHGRYLAAAAEGVVSILDVETQACRQKLQ 755

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|280967728|gb|ACZ98534.1| LisH-SSDP-WD40 [Malus x domestica]

 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/792 (66%), Positives = 602/792 (76%), Gaps = 58/792 (7%)

Query: 9   DKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN 68
           D  LDVYIYDYL+KRKLHASAKAFQ EGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN
Sbjct: 4   DHRLDVYIYDYLMKRKLHASAKAFQDEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN 63

Query: 69  EKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRR-- 126
           EKHSE+AASYIE+QVIKAREQQQQQ+ Q Q   Q QQ+ +Q+   Q+  Q+QQQQQ++  
Sbjct: 64  EKHSEAAASYIETQVIKAREQQQQQKPQLQDQMQMQQLLLQRHAQQQQQQRQQQQQQQQP 123

Query: 127 -----------DSTQHLNDTGDD--LR--PGFAKAFTTKMYEDRLKKLPFQRDSLDDATI 171
                      D TQ  N T +D  LR  P  A +  TKMYE+RLK LP QRD++DDA I
Sbjct: 124 QQQQQQQQQRRDGTQLHNGTANDSLLRQNPATANSMATKMYEERLK-LPPQRDAMDDAAI 182

Query: 172 KPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVS----QQVQSRSQQPPLSTQ 227
           K RL DNM+QLLDPNH +++KAA  G QP GQ LHGT G      QQ  SRSQQ P S+Q
Sbjct: 183 KQRLGDNMSQLLDPNHVSMMKAATAGGQPPGQMLHGTPGGVLGNLQQPHSRSQQLPGSSQ 242

Query: 228 EVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQ 287
           ++K+E+   MNPRA   EGSLIG HGSNQG  N+TLKGWPLTG D+ RSG+LQQQ SL Q
Sbjct: 243 DIKSEV---MNPRAVAPEGSLIGTHGSNQGNNNLTLKGWPLTGFDRLRSGILQQQNSLMQ 299

Query: 288 ---PYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
              PYNQL  QQ ++ AQQNLASPS+NDL++R+++ML N+RNM L +DG  +SV   V  
Sbjct: 300 SPQPYNQLLQQQQLMLAQQNLASPSSNDLDNRRMKMLLNNRNMVLGKDGQLSSVD--VPN 357

Query: 345 VGSAMQIISPGLPRGDNDLLIK---------IQQQQQQLQHYSHHPLSSQQSQNSNPLLQ 395
           VGS  Q+  P LPRGD D+L+K         +Q   QQ Q YS HPLS Q SQNS+  LQ
Sbjct: 358 VGSPAQVGCPVLPRGDADMLMKPTYQLQQQQMQSNNQQQQPYSQHPLSGQHSQNSSQHLQ 417

Query: 396 QQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPS 455
           Q +KI+  GSM  DGSM NT QGNDQASKNQ+GRKRKQ VSSSGPANSSGT NT GP+PS
Sbjct: 418 QHEKIMGSGSMAPDGSMPNTLQGNDQASKNQLGRKRKQPVSSSGPANSSGTVNTTGPSPS 477

Query: 456 SPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLD 515
           SPS+PSTHT GDV+S PTL HNG SSKSLLMFGSDG+GS  SAPN+LTD+DRFVDDGSL+
Sbjct: 478 SPSTPSTHTAGDVMSMPTLPHNGGSSKSLLMFGSDGLGSRASAPNKLTDVDRFVDDGSLE 537

Query: 516 DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575
           DNVESFLS DDADPR RV R ++V KGF+F E QLIPAST+KVE CH S DGK LATGGH
Sbjct: 538 DNVESFLSHDDADPRGRVVRCSDVSKGFSFKEVQLIPASTNKVECCHLSSDGKSLATGGH 597

Query: 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635
           D+KAVLWCTE+++VKSTL+EH+QWITDVRFSPS+SRLATSSAD+TVRVWD +NP YSLRT
Sbjct: 598 DRKAVLWCTETYSVKSTLDEHSQWITDVRFSPSMSRLATSSADKTVRVWDADNPGYSLRT 657

Query: 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 695
           FTGHS+TVMS+DFHPSKED LCSCDNNSEIRYWSI NGSCAGVFK   GA+Q+RFQP  G
Sbjct: 658 FTGHSSTVMSVDFHPSKEDFLCSCDNNSEIRYWSIKNGSCAGVFK--GGASQVRFQPCFG 715

Query: 696 RILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV 755
           R LAAA +N++SILDVETQVCRLKLQ                 H   V S+        +
Sbjct: 716 RNLAAAADNFVSILDVETQVCRLKLQ----------------GHKSAVHSVCWDPSGDYL 759

Query: 756 ASASHDKCVKIW 767
           AS S D  V++W
Sbjct: 760 ASVS-DDLVRVW 770

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445366|ref|XP_002284908.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Vitis vinifera]

 Score =  904 bits (2335), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/768 (68%), Positives = 585/768 (76%), Gaps = 53/768 (6%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
           DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q  Q   Q+  QQ 
Sbjct: 61  DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120

Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
           Q QQ                  D TQ LN +G+ L          P  A    TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180

Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
           LK LP QRD LDDA +K R  DNM QLL+PNHA+LLK+AA+  QP GQTLHG   G+S  
Sbjct: 181 LK-LPLQRDPLDDAAMK-RFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 237

Query: 213 -QQVQSRSQQPPLSTQ-EVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTG 270
            QQVQSR+QQ  +S+  ++K+EMNP MNPRAAG EGSLIGVHGSNQG  N+TLKGWPLTG
Sbjct: 238 LQQVQSRNQQLQVSSACDIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTG 297

Query: 271 LDQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRN 326
           LDQ RSG+LQQ KSL QP    +     QQL+LQAQQNLASPSA+DLE RKLRML NSRN
Sbjct: 298 LDQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN 357

Query: 327 MGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK-----------IQQQQQQLQ 375
             L +DG  N+VGD+V+ VGS MQ+  P LPRGD D+LIK           +Q   QQ Q
Sbjct: 358 -SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKRLNVSQLQQQQLQNSNQQQQ 416

Query: 376 HYSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQA 434
            Y  HPLSSQQSQ+SN  LL QQDK++  GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ 
Sbjct: 417 QYLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQP 476

Query: 435 VSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMG 493
           VSSSGPANSSGT NT GP+PSS  S  + HTPGDVIS PTL HNG SSKSLLM+GSDGMG
Sbjct: 477 VSSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMG 536

Query: 494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553
           + TSAPNQL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS +  KGF+F+E + I A
Sbjct: 537 THTSAPNQLADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITA 596

Query: 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
           STSKVE CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RFSPS+ RLA
Sbjct: 597 STSKVECCHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLA 656

Query: 614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
           TSSAD+TVRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EIRYWSI NG
Sbjct: 657 TSSADKTVRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNG 716

Query: 674 SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721
           SC  VFK   G   MRFQPR GR LAAA E  +SILDVETQ CR KLQ
Sbjct: 717 SCTRVFK--GGTNHMRFQPRHGRYLAAAAEGVVSILDVETQACRQKLQ 762

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484630|ref|XP_003633134.1| PREDICTED: transcriptional corepressor LEUNIG-like [Vitis vinifera]

 Score =  899 bits (2324), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/776 (67%), Positives = 583/776 (75%), Gaps = 64/776 (8%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
           DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q  Q   Q+  QQ 
Sbjct: 61  DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120

Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
           Q QQ                  D TQ LN +G+ L          P  A    TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180

Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
           LK LP QRD LDDA +K R  DNM QLL+PNHA+LLK+AA+  QP GQTLHG   G+S  
Sbjct: 181 LK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 238

Query: 213 -QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGL 271
            QQVQSR+QQ     Q++K+EMNP MNPRAAG EGSLIGVHGSNQG  N+TLKGWPLTGL
Sbjct: 239 LQQVQSRNQQ----LQDIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGL 294

Query: 272 DQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNM 327
           DQ RSG+LQQ KSL QP    +     QQL+LQAQQNLASPSA+DLE RKLRML NSRN 
Sbjct: 295 DQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN- 353

Query: 328 GLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK-----------IQQQQQQLQH 376
            L +DG  N+VGD+V+ VGS MQ+  P LPRGD D+LIK           +Q   QQ Q 
Sbjct: 354 SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKRLNVSQLQQQQLQNSNQQQQQ 413

Query: 377 YSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAV 435
           Y  HPLSSQQSQ+SN  LL QQDK++  GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ V
Sbjct: 414 YLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPV 473

Query: 436 SSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGS 494
           SSSGPANSSGT NT GP+PSS  S  + HTPGDVIS PTL HNG SSKSLLM+GSDGMG+
Sbjct: 474 SSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMGT 533

Query: 495 LTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545
            TSAPNQL          D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS +  KGF+F
Sbjct: 534 HTSAPNQLWNNRYNNLQADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSF 593

Query: 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 605
           +E + I ASTSKVE CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RF
Sbjct: 594 SEVRCITASTSKVECCHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRF 653

Query: 606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
           SPS+ RLATSSAD+TVRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EI
Sbjct: 654 SPSMPRLATSSADKTVRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEI 713

Query: 666 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721
           RYWSI NGSC  VFK   G   MRFQPR GR LAAA E  +SILDVETQ CR KLQ
Sbjct: 714 RYWSIPNGSCTRVFK--GGTNHMRFQPRHGRYLAAAAEGVVSILDVETQACRQKLQ 767

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784075|emb|CAN76829.1| hypothetical protein VITISV_002025 [Vitis vinifera]

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/804 (65%), Positives = 587/804 (73%), Gaps = 90/804 (11%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIE-------------------SQVIKAREQQQQQQQQHQKPQ 101
           DIFIARTNEKHSE+AASYIE                   +Q+IKARE QQQQQQQ Q+ Q
Sbjct: 61  DIFIARTNEKHSEAAASYIELFLEKFFNNLTVKSMLKCQTQLIKARELQQQQQQQQQQQQ 120

Query: 102 QHQQMQVQQLLLQRHAQQQQQQQRR------------------DSTQHLNDTGDDL---- 139
           Q QQ Q  Q   Q+  QQQQ Q ++                  D TQ LN +G+ L    
Sbjct: 121 QQQQHQKPQQQQQQQQQQQQMQMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSND 180

Query: 140 -----RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAA 194
                 P  A    TKMYE+RLK LP QRD LDDA +K R  DNM QLL+PNHA+LLK+A
Sbjct: 181 ALMRQNPATANTLATKMYEERLK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSA 239

Query: 195 AIGSQPSGQTLHGT-HGVS---QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIG 250
           A+  QP GQTLHG   G+S   QQVQSR+QQ     Q++K+EMNP MNPRAAG EGSLIG
Sbjct: 240 AVSGQP-GQTLHGAPGGISGNLQQVQSRNQQ----LQDIKSEMNPMMNPRAAGPEGSLIG 294

Query: 251 VHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLA 306
           VHGSNQG  N+TLKGWPLTGLDQ RSG+LQQ KSL QP    +     QQL+LQAQQNLA
Sbjct: 295 VHGSNQGGNNLTLKGWPLTGLDQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLA 354

Query: 307 SPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK 366
           SPSA+DLE RKLRML NSRN  L +DG  N+VGD+V+ VGS MQ+  P LPRGD D+LIK
Sbjct: 355 SPSASDLECRKLRMLLNSRN-SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIK 413

Query: 367 -----------IQQQQQQLQHYSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSN 414
                      +Q   QQ Q Y  HPLSSQQSQ+SN  LL QQDK++  GS+ +DGSMSN
Sbjct: 414 RLNVSQLQQQQLQNSNQQQQQYLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSN 473

Query: 415 TFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPT 473
           TF+GNDQ SK QIGRKRKQ VSSSGPANSSGT NT GP+PSS  S  + HTPGDVIS PT
Sbjct: 474 TFRGNDQTSKGQIGRKRKQPVSSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPT 533

Query: 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQL--------------TDMDRFVDDGSLDDNVE 519
           L HNG SSKSLLM+GSDGMG+ TSAPNQL               D+DRFVDDGSLDDNVE
Sbjct: 534 LSHNGGSSKSLLMYGSDGMGTHTSAPNQLHSVGQWNNRYNNLQADVDRFVDDGSLDDNVE 593

Query: 520 SFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579
           SFL+ DD DPRD VGRS +  KGF+F+E + I ASTSKVE CHFS DGKLLATGG DKKA
Sbjct: 594 SFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITASTSKVECCHFSSDGKLLATGGQDKKA 653

Query: 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
           VLWCTESFT KS LEEH+Q ITD+RFSPS+ RLATSSAD+TVRVWD +NP YSLRTFTGH
Sbjct: 654 VLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLATSSADKTVRVWDVDNPVYSLRTFTGH 713

Query: 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA 699
           ST V SLDFHP+K+DL+CSCD N EIRYWSI NGSC  VFK   G   MRFQPR GR LA
Sbjct: 714 STNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNGSCTRVFK--GGTNHMRFQPRHGRYLA 771

Query: 700 AAIENYISILDVETQVCRLKLQTL 723
           AA E  +SILDVETQ CR KLQ+L
Sbjct: 772 AAAEGVVSILDVETQACRQKLQSL 795

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515484|ref|XP_003526430.1| PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max]

 Score =  875 bits (2261), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/827 (61%), Positives = 589/827 (71%), Gaps = 82/827 (9%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L ASA+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
           DIFIARTNEKHSE AASYIE+Q+IKAREQQQQQ QQ  +PQQ Q  Q    + Q   Q+ 
Sbjct: 61  DIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQHMQMQQLLLQRA 120

Query: 121 QQQQR------------------------RDSTQHLNDTGDDL--RPGFAKAFTTKMYED 154
           QQQQ+                        RD    LN + + L   PG A A  TKMYE+
Sbjct: 121 QQQQQQQQQQQQQPQSQQQQSQPQQQQQSRDRPHLLNGSANGLVGNPGTANALATKMYEE 180

Query: 155 RLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHG-VSQ 213
           RLK LP QRDSLDDA  K R  +NM QLLDPNHA +LK+AA   QPSGQ LHG  G +S 
Sbjct: 181 RLK-LPLQRDSLDDAATKQRFGENMGQLLDPNHAPILKSAAAPGQPSGQVLHGAAGGMSP 239

Query: 214 QVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQ 273
           QVQ+R+QQ P ST ++K E++P +NPRA G EGSL+G+ GSN G+ N+TLKGWPLTGL+Q
Sbjct: 240 QVQARTQQLPGSTLDIKGEISPVLNPRAVGPEGSLMGMPGSNPGSNNLTLKGWPLTGLEQ 299

Query: 274 FRSGLLQQQKSLTQ---PYNQLQL------QQLMLQAQQNLASPSANDLESRKLRMLHNS 324
            RSGLLQQQK   Q   P++QLQ+      QQLML AQQNLASPSA++ ESR+LRML N+
Sbjct: 300 LRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLML-AQQNLASPSASE-ESRRLRMLLNN 357

Query: 325 RNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSH----- 379
           RN+GL +DG SN VGD+VS VGS +Q   P  PRGD D+L+K++  Q Q Q         
Sbjct: 358 RNIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLVKLKLAQLQQQQQQQSSTNA 417

Query: 380 -------HPLSSQQSQNSNPLLQQQDKILAGG--SMTMDGSMSNTFQGNDQASKNQIGRK 430
                  H LS+QQSQ SN  + QQDK+  GG  S+T+DGSMSN+F+GNDQ SKNQIGRK
Sbjct: 418 QQQQLQQHTLSNQQSQTSNHSMHQQDKVGGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRK 477

Query: 431 RKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGS 489
           RKQ  SSSGPANSSGTANT GP+PSS  S  + HTPGDVIS P L H+G+SSK L+MF +
Sbjct: 478 RKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFST 537

Query: 490 DGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540
           DG G+LTS  NQL          D+DRFV+DGSLD+NVESFLS DD DPRD VGR  +V 
Sbjct: 538 DGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVS 597

Query: 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI 600
           KGFTF++   + ASTSKV  CHFS DGKLLA+GGHDKK VLW T+S   K+TLEEH+  I
Sbjct: 598 KGFTFSDVNSVRASTSKVSCCHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLI 657

Query: 601 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660
           TDVRFSPS+ RLATSS D+TVRVWD +NP YSLRTFTGHST+VMSLDFHP+K+DL+CSCD
Sbjct: 658 TDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCD 717

Query: 661 NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720
            + EIRYWSINNGSCA V K   G TQMRFQPRLGR LAAA EN +SI DVETQVCR  L
Sbjct: 718 GDGEIRYWSINNGSCARVSK--GGTTQMRFQPRLGRYLAAAAENIVSIFDVETQVCRYSL 775

Query: 721 QTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
           +                 H K V  +       ++AS S D  V++W
Sbjct: 776 K----------------GHTKPVVCVCWDPSGELLASVSEDS-VRVW 805

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466351|ref|XP_003603460.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] gi|355492508|gb|AES73711.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]

 Score =  872 bits (2254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/946 (54%), Positives = 610/946 (64%), Gaps = 183/946 (19%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L ASA+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQ------------------------- 95
           DIFIARTNEKHSE AASYIE+Q+IKAREQQQQQQQ                         
Sbjct: 61  DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQPQQSQHAQQQQQQHMQMQQ 120

Query: 96  ----QHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDL--RPGFAKAFTT 149
               +H + QQ QQ   QQ   Q    Q QQQQ RD T  LN + + L   P  A A  T
Sbjct: 121 LLMQRHAQQQQQQQQHQQQPQSQPQQPQPQQQQNRDRTHLLNGSANGLAGNPATANAIAT 180

Query: 150 KMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTH 209
           KMYE+RLK  P QRDSLDDA +K R  +NM QLLDPNHA++LK+AA G QPSGQ LHGT 
Sbjct: 181 KMYEERLKGPP-QRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAAGGQPSGQVLHGTA 239

Query: 210 G-VSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPL 268
           G +S QVQ+RSQQ P ST ++K+E+NP +NPRAAG EGSL+G+ GSNQG  N+TLKGWPL
Sbjct: 240 GGMSPQVQARSQQLPGSTTDIKSEINPVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPL 299

Query: 269 TGLDQFRSGLLQQQKSLTQ---PYNQLQL------QQLMLQAQQNLASPSANDLESRKLR 319
           TGL+Q RSGLLQQQK   Q   P++QLQ+      QQLML AQQ+LASPSA++ ESR+LR
Sbjct: 300 TGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQLML-AQQSLASPSASE-ESRRLR 357

Query: 320 MLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQ--------- 370
           ML N+RN+GL +DG SN  GD++S VGS +    P  PRGD D+L+K++           
Sbjct: 358 MLLNNRNIGLNKDGLSNPGGDMLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQQQQ 417

Query: 371 --------QQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGG-SMTMDGSMSNTFQGNDQ 421
                     Q Q    H LS+QQSQ SN  + QQDK+  GG S+TMDGSMSN+++GNDQ
Sbjct: 418 QHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQ 477

Query: 422 --------------------------------------------ASKNQIGRKRKQAVSS 437
                                                        SKNQ+GRKRKQ VSS
Sbjct: 478 IKVQPTEQSEEVLMFCGIPPFACFWSKDEILNDGWLHSPIFAIVVSKNQMGRKRKQPVSS 537

Query: 438 SGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLT 496
           SGPANSSGTANT GP+PSS  S  + HTPGD +S P L HN +SSK L+MF +DG G+LT
Sbjct: 538 SGPANSSGTANTAGPSPSSAPSTPSTHTPGDAVSMPALPHNSSSSKPLMMFSTDGTGTLT 597

Query: 497 SAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE 547
           S  NQL          D+DRFVDDGSLDDNVESFLS DD DPRD VGR  +V KGFTF++
Sbjct: 598 SPSNQLWDDKDLELKADVDRFVDDGSLDDNVESFLSQDDTDPRDPVGRCMDVSKGFTFSD 657

Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
              + AS+SK+  CHFS DGKLLA+GGHDKKAV+W  +S   K+ LEEH+  ITDVRFS 
Sbjct: 658 VNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYADSLKQKAILEEHSALITDVRFSA 717

Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
           S+ RLATSS D+TVRVWD +NP YSLRTFTGHST+VMSLDFHP+K+DL+CSCD + EIRY
Sbjct: 718 SMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRY 777

Query: 668 WSINNGSCAGVFKCQSGATQMRFQPRLGR------------------------------- 696
           WSINNGSC  V K   G TQMRFQPRLGR                               
Sbjct: 778 WSINNGSCVRVSK--GGTTQMRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTI 835

Query: 697 ----------ILAAAIENYISILDVETQV-------------CRLK-----------LQT 722
                     +LA+  E+ + I  +E +              C               Q+
Sbjct: 836 DSVCWDPSGELLASVSEDSVRIWTLEGECVHELSCNGSKFHSCVFHPTFPSLLVIGCYQS 895

Query: 723 LELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768
           LELWNM ENKT+TLSAHD L+++LA STVNG+VASASHDK +K+WK
Sbjct: 896 LELWNMAENKTMTLSAHDGLITALAVSTVNGLVASASHDKFIKLWK 941

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441952|ref|XP_004138746.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Cucumis sativus]

 Score =  868 bits (2244), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/829 (60%), Positives = 582/829 (70%), Gaps = 87/829 (10%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
           DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q  QQ       LL+QRHAQ
Sbjct: 61  DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120

Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
           QQQQQQ                        RRD  Q LN + +            PG   
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180

Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
           A  TKMYEDRLK LP QRDSLDD  +K R  DN+ QLLDPNHA++LK+AA  SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239

Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
           HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G  N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299

Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
           GWPLTGLDQ RSG+LQQQK   Q    + QLQ+      QQLML AQQNL SPS ND + 
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357

Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
           R+LRML N+R   +A+DG SNSVGD+V  VGS +Q  SP LPRGDN D+++KI+      
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414

Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
                    QQQQ Q    H LS+QQSQ+SN  + QQ+KI   GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474

Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
           Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS  S  + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534

Query: 480 SSKSL-LMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538
           SSK L +MF SDG G+ TS  NQL DMDR+V+DGSLDDNV+SFLS DD DPRD VGR  +
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLADMDRYVEDGSLDDNVDSFLSHDDGDPRDPVGRCMD 594

Query: 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ 598
             KGFTFTE   + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+   K++LEEH  
Sbjct: 595 GSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKPKTSLEEHAA 654

Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
            +TDVRFSPS+ RLATSS DRTVRVWD +N  YSLRTFTGHS +VMSLDFHP K+D +CS
Sbjct: 655 IVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFHPKKDDFICS 714

Query: 659 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 718
           CD + EIRYW+I NGSCA VFK  +G   MRFQPRLGR  +A ++N ++I DVETQ    
Sbjct: 715 CDGDGEIRYWNITNGSCAAVFKGGTGP--MRFQPRLGRYFSAVVDNIVTIFDVETQA--- 769

Query: 719 KLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
                        +  +L  H K V SL        +AS S D  V++W
Sbjct: 770 -------------RVHSLRGHTKTVQSLCWDPSGEFLASVSEDS-VRVW 804

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441950|ref|XP_004138745.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Cucumis sativus]

 Score =  860 bits (2222), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/838 (59%), Positives = 582/838 (69%), Gaps = 96/838 (11%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
           DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q  QQ       LL+QRHAQ
Sbjct: 61  DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120

Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
           QQQQQQ                        RRD  Q LN + +            PG   
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180

Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
           A  TKMYEDRLK LP QRDSLDD  +K R  DN+ QLLDPNHA++LK+AA  SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239

Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
           HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G  N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299

Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
           GWPLTGLDQ RSG+LQQQK   Q    + QLQ+      QQLML AQQNL SPS ND + 
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357

Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
           R+LRML N+R   +A+DG SNSVGD+V  VGS +Q  SP LPRGDN D+++KI+      
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414

Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
                    QQQQ Q    H LS+QQSQ+SN  + QQ+KI   GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474

Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
           Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS  S  + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534

Query: 480 SSKSL-LMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADP 529
           SSK L +MF SDG G+ TS  NQL          DMDR+V+DGSLDDNV+SFLS DD DP
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDGSLDDNVDSFLSHDDGDP 594

Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
           RD VGR  +  KGFTFTE   + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+   
Sbjct: 595 RDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKP 654

Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
           K++LEEH   +TDVRFSPS+ RLATSS DRTVRVWD +N  YSLRTFTGHS +VMSLDFH
Sbjct: 655 KTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFH 714

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 709
           P K+D +CSCD + EIRYW+I NGSCA VFK  +G   MRFQPRLGR  +A ++N ++I 
Sbjct: 715 PKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGP--MRFQPRLGRYFSAVVDNIVTIF 772

Query: 710 DVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
           DVETQ                 +  +L  H K V SL        +AS S D  V++W
Sbjct: 773 DVETQA----------------RVHSLRGHTKTVQSLCWDPSGEFLASVSEDS-VRVW 813

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522548|ref|XP_004168288.1| PREDICTED: transcriptional corepressor LEUNIG-like [Cucumis sativus]

 Score =  860 bits (2221), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/838 (59%), Positives = 582/838 (69%), Gaps = 96/838 (11%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
           DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q  QQ       LL+QRHAQ
Sbjct: 61  DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120

Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
           QQQQQQ                        RRD  Q LN + +            PG   
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180

Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
           A  TKMYEDRLK LP QRDSLDD  +K R  DN+ QLLDPNHA++LK+AA  SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239

Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
           HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G  N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299

Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
           GWPLTGLDQ RSG+LQQQK   Q    + QLQ+      QQLML AQQNL SPS ND + 
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357

Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
           R+LRML N+R   +A+DG SNSVGD+V  VGS +Q  SP LPRGDN D+++KI+      
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414

Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
                    QQQQ Q    H LS+QQSQ+SN  + QQ+KI   GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHTLSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474

Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
           Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS  S  + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534

Query: 480 SSKSL-LMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADP 529
           SSK L +MF SDG G+ TS  NQL          DMDR+V+DGSLDDNV+SFLS DD DP
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDGSLDDNVDSFLSHDDGDP 594

Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
           RD VGR  +  KGFTFTE   + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+   
Sbjct: 595 RDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKP 654

Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
           K++LEEH   +TDVRFSPS+ RLATSS DRTVRVWD +N  YSLRTFTGHS +VMSLDFH
Sbjct: 655 KTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFH 714

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 709
           P K+D +CSCD + EIRYW+I NGSCA VFK  +G   MRFQPRLGR  +A ++N ++I 
Sbjct: 715 PKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGP--MRFQPRLGRYFSAVVDNIVTIF 772

Query: 710 DVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
           DVETQ                 +  +L  H K V SL        +AS S D  V++W
Sbjct: 773 DVETQA----------------RVHSLRGHTKTVQSLCWDPSGEFLASVSEDS-VRVW 813

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	768
UNIPROTKB|H3BPK1	210	KATNB1 "Katanin p80 WD40 repea	0.214	0.785	0.321	4.2e-15
DICTYBASE|DDB_G0287273	335	wdr5 "WD40 repeat-containing p	0.266	0.611	0.255	5.6e-15
ASPGD|ASPL0000038644	577	AN10391 [Emericella nidulans (	0.169	0.225	0.388	6.3e-15
UNIPROTKB|H3BPD8	208	KATNB1 "Katanin p80 WD40 repea	0.225	0.831	0.313	6.8e-15
ZFIN|ZDB-GENE-051120-180	756	taf5 "TAF5 RNA polymerase II,	0.190	0.193	0.350	1.3e-14
CGD|CAL0000165	798	orf19.536 [Candida albicans (t	0.242	0.233	0.293	1.9e-14
FB|FBgn0021874	488	Nle "Notchless" [Drosophila me	0.210	0.331	0.291	1.9e-14
TAIR|locus:2140215	333	WDR5b "AT4G02730" [Arabidopsis	0.252	0.582	0.261	2.2e-14
ZFIN|ZDB-GENE-040426-1993	416	poc1a "POC1 centriolar protein	0.208	0.384	0.319	2.7e-14
UNIPROTKB|F1S845	542	TAF5 "Uncharacterized protein"	0.188	0.267	0.346	2.8e-14

UNIPROTKB|H3BPK1 KATNB1 "Katanin p80 WD40 repeat-containing subunit B1" [Homo sapiens (taxid:9606)]

 Score = 201 (75.8 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 55/171 (32%), Positives = 81/171 (47%)

Query:   544 TFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 602
             T  + Q I A  S V S       G+LLATGG D +  LW         +L  HT  +  
Sbjct:     9 TAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVES 68

Query:   603 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
             VR +     +   S   ++RVWD E     LRT  GH   + SLDFHP  E  + S   +
Sbjct:    69 VRLNTPEELIVAGSQSGSIRVWDLEAAKI-LRTLMGHKANICSLDFHPYGE-FVASGSQD 126

Query:   663 SEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIENY-ISILDV 711
             + I+ W I    C   ++  S A + +RF P  G+ LA+A +++ + + D+
Sbjct:   127 TNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPD-GKWLASAADDHTVKLWDL 176

GO:0008017 "microtubule binding" evidence=IEA

GO:0008352 "katanin complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0010942 "positive regulation of cell death" evidence=IEA

GO:0010976 "positive regulation of neuron projection development" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0045502 "dynein binding" evidence=IEA

GO:0051013 "microtubule severing" evidence=IEA

DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 215 (80.7 bits), Expect = 5.6e-15, P = 5.6e-15
 Identities = 54/211 (25%), Positives = 100/211 (47%)

Query:   558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
             + S  FSPDGK LA+   DK   +W       + TLE H + I+D+ +S     + ++S 
Sbjct:    49 ISSVKFSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASD 108

Query:   618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677
             D+T+++WD E+    ++T  GH   V  + F+P + +L+ S   +  +R W +N G C  
Sbjct:   109 DKTIKIWDVESGKM-VKTLKGHKEYVFGVSFNP-QSNLIVSGSFDENVRIWDVNTGECTK 166

Query:   678 VFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTL 736
             +    S   T + F      +++ + +  + I D  T   +L L T+   +  E   +  
Sbjct:   167 MISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTG--QL-LNTISTEDGKEVSFVKF 223

Query:   737 SAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
             S + K V +        + +  ++ KC+K +
Sbjct:   224 SPNGKFVLAGTLDNTLRLWSYNNNKKCLKTY 254

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000038644 AN10391 [Emericella nidulans (taxid:162425)]

 Score = 222 (83.2 bits), Expect = 6.3e-15, P = 6.3e-15
 Identities = 52/134 (38%), Positives = 70/134 (52%)

Query:   558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
             V S  FS D +LLA+   D    +W T + +++ TLE H  W+  V FS     LA++S 
Sbjct:   424 VRSVIFSHDSQLLASASDDSTVKIWDTGTGSLQHTLEGHRDWVRSVIFSHDSRLLASASD 483

Query:   618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSINNGSCA 676
             DRTVR+WDTE   +   T  GHS+ V S+ F H S+  LL S  N+  +R W I   S  
Sbjct:   484 DRTVRIWDTEKGSHK-HTLEGHSSLVTSVSFSHDSR--LLASASNDQTVRIWDIEARSLQ 540

Query:   677 GVFKCQSGATQMRF 690
               F   +    MRF
Sbjct:   541 HTFDLDATIEAMRF 554

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|H3BPD8 KATNB1 "Katanin p80 WD40 repeat-containing subunit B1" [Homo sapiens (taxid:9606)]

 Score = 199 (75.1 bits), Expect = 6.8e-15, P = 6.8e-15
 Identities = 58/185 (31%), Positives = 86/185 (46%)

Query:   530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT 588
             RDR  ++A V         + I A  S V S       G+LLATGG D +  LW      
Sbjct:     5 RDRCAQAAAVAA------VEEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPN 58

Query:   589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648
                +L  HT  +  VR +     +   S   ++RVWD E     LRT  GH   + SLDF
Sbjct:    59 CIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKI-LRTLMGHKANICSLDF 117

Query:   649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIENY-I 706
             HP  E  + S   ++ I+ W I    C   ++  S A + +RF P  G+ LA+A +++ +
Sbjct:   118 HPYGE-FVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPD-GKWLASAADDHTV 175

Query:   707 SILDV 711
              + D+
Sbjct:   176 KLWDL 180

GO:0008017 "microtubule binding" evidence=IEA

GO:0008352 "katanin complex" evidence=IEA

GO:0051013 "microtubule severing" evidence=IEA

ZFIN|ZDB-GENE-051120-180 taf5 "TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Danio rerio (taxid:7955)]

 Score = 221 (82.9 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 53/151 (35%), Positives = 80/151 (52%)

Query:   563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
             FSP G    +GGHD+ A LW T+ +        H   +T  RF P+ + +AT S+DRTVR
Sbjct:   549 FSPFGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYVATGSSDRTVR 608

Query:   623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 682
             +WD  N +  +R FTGH   + SL F P+ +  L S   +  +  W I +G      K  
Sbjct:   609 LWDVLNGN-CVRIFTGHKGPIHSLAFSPNGK-FLASGSTDGRVLLWDIGHGLMIAELKGH 666

Query:   683 SGATQ-MRFQPRLGRILAA-AIENYISILDV 711
             +G    ++F  R G I+A+ +I+N + + DV
Sbjct:   667 TGTIYALKFS-RDGEIIASGSIDNTVRLWDV 696

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

CGD|CAL0000165 orf19.536 [Candida albicans (taxid:5476)]

 Score = 220 (82.5 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 61/208 (29%), Positives = 101/208 (48%)

Query:   563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
             FSPD K L +   DK   LW  +++T   + + HTQ + DV+FSP      T+S D+T R
Sbjct:   525 FSPDNKYLLSCSEDKTVRLWSLDTYTALVSYKGHTQPVWDVKFSPLGHYFVTASHDQTAR 584

Query:   623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 682
             +W T++  Y LR F GH   V  ++FHP+   +     + +  R W ++ G+C  VF   
Sbjct:   585 LWATDHI-YPLRIFAGHINDVDCVEFHPNSNYVFTGSSDKT-CRMWDVHTGNCVRVFLGH 642

Query:   683 SGATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTL-TLSAHD 740
             + +   +   P  GR LA+  E+ I        +C        +W++   + L ++  H 
Sbjct:   643 TNSVNCLAVSPD-GRWLASGGEDGI--------IC--------VWDIGSGRRLKSMRGHA 685

Query:   741 KL-VSSLAASTVNGMVASASHDKCVKIW 767
             +  + SLA S    ++ S   D  V++W
Sbjct:   686 RASLYSLAFSRDGTVLVSGCADNSVRVW 713

GO:0000124 "SAGA complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0046695 "SLIK (SAGA-like) complex" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0016573 "histone acetylation" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

FB|FBgn0021874 Nle "Notchless" [Drosophila melanogaster (taxid:7227)]

 Score = 173 (66.0 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
 Identities = 49/168 (29%), Positives = 71/168 (42%)

Query:   513 SLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEF-QLIPASTSKVESCHFSPDGKLLA 571
             SL+D ++   S D  +  D V +   V K    T     +P     V S +FSPDG  LA
Sbjct:    77 SLEDTLD-LASVDTENVIDIVYQPQAVFKVRPVTRCTSSMPGHAEAVVSLNFSPDGAHLA 135

Query:   572 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631
             +G  D    LW   + T   T   H QW+  V ++P   RLA+     ++ +WD E    
Sbjct:   136 SGSGDTTVRLWDLNTETPHFTCTGHKQWVLCVSWAPDGKRLASGCKAGSIIIWDPETGQQ 195

Query:   632 SLRTFTGHSTTVMSLDFHPSKEDLLC----SCDNNSEIRYWSINNGSC 675
               R  +GH   +  L + P   D  C    S   + + R W +  G C
Sbjct:   196 KGRPLSGHKKHINCLAWEPYHRDPECRKLASASGDGDCRIWDVKLGQC 243

GO:0007219 "Notch signaling pathway" evidence=ISS;TAS

GO:0005112 "Notch binding" evidence=TAS

TAIR|locus:2140215 WDR5b "AT4G02730" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 52/199 (26%), Positives = 92/199 (46%)

Query:   526 DADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585
             +A+     G S  V     +   + +   T+ +    FS DG LLA+   DK  +LW   
Sbjct:    14 NANSTGNAGTSGNVPIYKPYRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSAT 73

Query:   586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
             ++++    E H+  I+D+ +S       ++S D T+R+WD  +P   L+   GH+  V  
Sbjct:    74 NYSLIHRYEGHSSGISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFC 133

Query:   646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIEN 704
             ++F+P   +L+ S   +  IR W +  G C  + K  S   + + F      I++A+ + 
Sbjct:   134 VNFNPPS-NLIVSGSFDETIRIWEVKTGKCVRMIKAHSMPISSVHFNRDGSLIVSASHDG 192

Query:   705 YISILDVETQVCRLKLQTL 723
                I D +   C   L+TL
Sbjct:   193 SCKIWDAKEGTC---LKTL 208

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

ZFIN|ZDB-GENE-040426-1993 poc1a "POC1 centriolar protein homolog A (Chlamydomonas)" [Danio rerio (taxid:7955)]

 Score = 213 (80.0 bits), Expect = 2.7e-14, P = 2.7e-14
 Identities = 54/169 (31%), Positives = 81/169 (47%)

Query:   547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
             E  L  A T  V S  FS DG+ L T   D+   LW      +  TL EH  W+   RFS
Sbjct:    94 ESVLFRAHTGSVRSVCFSADGQSLLTASDDQSIKLWSVHRQKIICTLREHNNWVRCARFS 153

Query:   607 PSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNS 663
             P    + + S DRTV++WD  +    + TF    G+S+ V   DFHPS   +  +  +N+
Sbjct:   154 PDGQLMVSVSDDRTVKLWDASSRQL-IHTFCEPGGYSSYV---DFHPSSTCIATASSDNT 209

Query:   664 EIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIENYISILDV 711
              +R W I   +    ++  S A   + F P    +L A+ ++ + ILD+
Sbjct:   210 -VRVWDIRTHTLLQHYQVHSAAVNALSFHPSGNHLLTASSDSTLKILDL 257

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0030030 "cell projection organization" evidence=IEA

UNIPROTKB|F1S845 TAF5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 214 (80.4 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
 Identities = 52/150 (34%), Positives = 77/150 (51%)

Query:   563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
             FSP G    +GGHD+ A LW T+ +        H   +   RF P+ + +AT SADRTVR
Sbjct:   353 FSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVR 412

Query:   623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 682
             +WD  N +  +R FTGH   + SL F P+    L +   +  +  W I +G   G  K  
Sbjct:   413 LWDVLNGN-CVRIFTGHKGPIHSLTFSPNGR-FLATGATDGRVLLWDIGHGLMVGELKGH 470

Query:   683 SGAT-QMRFQPRLGRILAA-AIENYISILD 710
             +     +RF  R G ILA+ +++N + + D
Sbjct:   471 TDTVCSLRFS-RDGEILASGSMDNTVRLWD 499

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FUY2	LEUNG_ARATH	No assigned EC number	0.5387	0.8072	0.6659	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_VI1732 hypothetical protein (894 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	768
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-43
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-40
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-28
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-27
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-23
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-10
smart00320	40	smart00320, WD40, WD40 repeats	7e-10
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-08
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-06
pfam08513	27	pfam08513, LisH, LisH	1e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	3e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	4e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-05
smart00320	40	smart00320, WD40, WD40 repeats	8e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	7e-04
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	8e-04
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	8e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.002
smart00320	40	smart00320, WD40, WD40 repeats	0.002
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.002
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.004
pfam07321	152	pfam07321, YscO, Type III secretion protein YscO	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  157 bits (400), Expect = 4e-43
 Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 21/216 (9%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           TS V S  FSPDG++L++   DK   +W  E+    +TL  HT W+  V FSP  + +A+
Sbjct: 93  TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           SS D T+++WD       + T TGH+  V S+ F P  E LL S  + + I+ W ++ G 
Sbjct: 153 SSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGK 210

Query: 675 CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKT 733
           C G  +  ++G   + F P  G +LA+  E+                 T+ +W++   + 
Sbjct: 211 CLGTLRGHENGVNSVAFSPD-GYLLASGSED----------------GTIRVWDLRTGEC 253

Query: 734 L-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768
           + TLS H   V+SLA S     +AS S D  ++IW 
Sbjct: 254 VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  150 bits (380), Expect = 1e-40
 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 21/219 (9%)

Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
           +   T  V    FSPDGKLLATG  D    +W  E+  +  TL+ HT  + DV  S   +
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64

Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
            LA+ S+D+T+R+WD E  +  +RT TGH++ V S+ F P    +L S   +  I+ W +
Sbjct: 65  YLASGSSDKTIRLWDLETGE-CVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDV 122

Query: 671 NNGSCAGVFKCQSGATQM-RFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMT 729
             G C    +  +       F P    + +++ +  I +                 W++ 
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL-----------------WDLR 165

Query: 730 ENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
             K + TL+ H   V+S+A S     + S+S D  +K+W
Sbjct: 166 TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  115 bits (290), Expect = 2e-28
 Identities = 47/159 (29%), Positives = 68/159 (42%), Gaps = 3/159 (1%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T      +   T  V S  FSPDG  +A+   D    LW   +    +TL  HT  +  V
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183

Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
            FSP   +L +SS+D T+++WD       L T  GH   V S+ F P    LL S   + 
Sbjct: 184 AFSPDGEKLLSSSSDGTIKLWDLSTGK-CLGTLRGHENGVNSVAFSPDG-YLLASGSEDG 241

Query: 664 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA 701
            IR W +  G C        +  T + + P   R+ + +
Sbjct: 242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  111 bits (280), Expect = 3e-27
 Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 21/180 (11%)

Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
           + TL+ HT  +T V FSP    LAT S D T++VWD E  +  LRT  GH+  V  +   
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-LRTLKGHTGPVRDVAAS 60

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISI 708
                L     + + IR W +  G C        S  + + F P  GRIL+++  +    
Sbjct: 61  ADGTYLASGSSDKT-IRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRD---- 114

Query: 709 LDVETQVCRLKLQTLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
                       +T+++W++   K L TL  H   V+S+A S     VAS+S D  +K+W
Sbjct: 115 ------------KTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  104 bits (258), Expect = 2e-23
 Identities = 60/208 (28%), Positives = 85/208 (40%), Gaps = 18/208 (8%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTV 621
           FSPDG LLA+G  D    LW   S +    TL  H+  +  V FSP    LA+ S+D TV
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308

Query: 622 RVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           R+WD E     S  T  GH   V SL F P    L+    ++  IR W +  G      +
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368

Query: 681 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD 740
             S    + F P    + + + +  + + D+ T                      L  H 
Sbjct: 369 GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL----------------RNLDGHT 412

Query: 741 KLVSSLAASTVNGMVASASHDKCVKIWK 768
             V+SL  S     +AS S D  +++W 
Sbjct: 413 SRVTSLDFSPDGKSLASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 97.9 bits (242), Expect = 2e-21
 Identities = 71/306 (23%), Positives = 114/306 (37%), Gaps = 40/306 (13%)

Query: 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556
           S   + +++   ++  SL     S               S                    
Sbjct: 13  SKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGH------ED 66

Query: 557 KVESCHFSPDGKLLATGGHDKKAVLWC--TESFTVKSTLEEHTQWITDVRF-SPSLSRLA 613
            + S  FSPDG+LL +G  D    LW        +KS    H   ++ +   SP  + + 
Sbjct: 67  SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSIL 126

Query: 614 T--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
              SS D TV++WD   P   +RT  GHS +V SL F P  + L      +  I+ W + 
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186

Query: 672 NGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIE-NYISILDVET-QVCRLKLQ------- 721
            G         +   + + F P  G ++A+      I + D+ T ++ R  L        
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246

Query: 722 -----------------TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDK 762
                            T+ LW++  + +L  TLS H   V S+A S    ++AS S D 
Sbjct: 247 SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDG 306

Query: 763 CVKIWK 768
            V++W 
Sbjct: 307 TVRLWD 312

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 87.5 bits (215), Expect = 4e-18
 Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 23/230 (10%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLW-CTESFTVKSTLEEHTQWIT 601
           T      +   T  V S  FSPDG  L+A+G  D    LW  +    ++STL  H+  + 
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246

Query: 602 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
              FSP  S LA+ S+D T+R+WD  +    LRT +GHS++V+S+ F P    LL S  +
Sbjct: 247 SS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD-GKLLASGSS 304

Query: 662 NSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 718
           +  +R W +  G        +      + + F P    +++   ++              
Sbjct: 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD-------------- 350

Query: 719 KLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768
              T+ LW++   K L        V S++ S    +V+S S D  V++W 
Sbjct: 351 --GTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWD 398

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 31/82 (37%), Positives = 42/82 (51%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T      +    + V S  FSPDG LLA+G  D    +W   +     TL  HT  +T +
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL 267

Query: 604 RFSPSLSRLATSSADRTVRVWD 625
            +SP   RLA+ SAD T+R+WD
Sbjct: 268 AWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 18/137 (13%)

Query: 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRF 690
             RT  GH+  V  + F P    LL +   +  I+ W +  G      K  +G    +  
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 691 QPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAST 750
                 + + + +  I + D+ET  C                  TL+ H   VSS+A S 
Sbjct: 60  SADGTYLASGSSDKTIRLWDLETGEC----------------VRTLTGHTSYVSSVAFSP 103

Query: 751 VNGMVASASHDKCVKIW 767
              +++S+S DK +K+W
Sbjct: 104 DGRILSSSSRDKTIKVW 120

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 54.2 bits (131), Expect = 7e-10
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
           S  +  TL+ HT  +T V FSP    LA+ S D T+++WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 19/39 (48%), Positives = 24/39 (61%)

Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
             +  TL+ HT  +T V FSP  + LA+ S D TVRVWD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 28/78 (35%), Positives = 45/78 (57%)

Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
           S V S  FSPDG+++++G  D    LW   + ++   L+ HT  +T + FSP    LA+ 
Sbjct: 371 SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430

Query: 616 SADRTVRVWDTENPDYSL 633
           S+D T+R+WD +    S+
Sbjct: 431 SSDNTIRLWDLKTSLKSV 448

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 51.1 bits (122), Expect = 2e-06
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 8/88 (9%)

Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVM 644
           L+ HT  I D++F+P  S  LA+ S D T+RVW+  + D S++          GH   + 
Sbjct: 70  LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129

Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSINN 672
            +D++P    ++CS   +S +  W I N
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIEN 157

Length = 568

>gnl|CDD|149534 pfam08513, LisH, LisH

 Score = 42.3 bits (101), Expect = 1e-05
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36
          + L+  IYDYL+K     +A+AF  E 
Sbjct: 1  EELNRLIYDYLVKSGYKETAEAFAKES 27

The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 600 ITDVRFSP-SLSRLATSSADRTVRVWD------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
           I DV F+P    +L T+S D T+  W       T+N    +    GH+  V  + FHPS 
Sbjct: 78  IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA 137

Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683
            ++L S   +  +  W +  G    V KC S
Sbjct: 138 MNVLASAGADMVVNVWDVERGKAVEVIKCHS 168

Length = 493

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 47.0 bits (111), Expect = 4e-05
 Identities = 55/253 (21%), Positives = 100/253 (39%), Gaps = 54/253 (21%)

Query: 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--------------W 599
           S++ V +  F  DG+  AT G +KK  ++  ES  +K   + H                W
Sbjct: 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESI-IKDGRDIHYPVVELASRSKLSGICW 540

Query: 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
            + ++     S++A+S+ +  V+VWD       +     H   V S+D+  +   LL S 
Sbjct: 541 NSYIK-----SQVASSNFEGVVQVWDVARSQL-VTEMKEHEKRVWSIDYSSADPTLLASG 594

Query: 660 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA-------------------- 699
            ++  ++ WSIN G   G  K ++    ++F    GR LA                    
Sbjct: 595 SDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPL 654

Query: 700 ------AAIENYISILDVETQVCRLKLQTLELWNMT-------ENKTLTLSAHDKLVSSL 746
                 +   +Y+  +D  T V      TL+LW+++       E    +   H  + + +
Sbjct: 655 CTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV 714

Query: 747 AASTVNGMVASAS 759
             S  +G +A+ S
Sbjct: 715 GLSVSDGYIATGS 727

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 730 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768
                TL  H   V+S+A S    ++AS S D  V++W 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582
           +    + +   T  V S  FSPDGK LA+G  D    LW
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 729 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768
           +     TL  H   V+S+A S     +AS S D  +K+W 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582
           +   T  V S  FSPDG LLA+G  D    +W
Sbjct: 7   LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
           LRT  GH+  V S+ F P   +LL S  ++  +R W 
Sbjct: 4   LRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.8 bits (101), Expect = 7e-04
 Identities = 15/51 (29%), Positives = 18/51 (35%)

Query: 81  SQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQH 131
           SQ         Q  QQ    QQ Q   + Q +     Q  QQQQ+    Q 
Sbjct: 224 SQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 42.6 bits (101), Expect = 8e-04
 Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 88  EQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAF 147
           +Q Q  Q Q Q  QQ QQ Q QQ   Q    Q  Q    +  Q L D     R G     
Sbjct: 625 QQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMG 684

Query: 148 TTKMYEDRLKKLPFQRDSLDDA 169
                          RD+L  A
Sbjct: 685 GEAGEAA--------RDALGRA 698

Length = 820

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 37.0 bits (87), Expect = 8e-04
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39
            L+  I +YLL+     +A+  Q E  +S
Sbjct: 4  SELNRLILEYLLRNGYEETAETLQKESGLS 33

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 735 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768
           TL  H   V+ +A S    ++A+ S D  +K+W 
Sbjct: 4   TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWD 37

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
           L+T  GH+  V S+ F P     L S  ++  I+ W 
Sbjct: 5   LKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.4 bits (98), Expect = 0.002
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 87  REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQ------QQQRRDSTQHLNDTGDDLR 140
           + Q  QQ QQ Q  QQ QQ Q  Q      A++QQ       +QR        + G+  R
Sbjct: 633 QGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMGGEAGEAAR 692

Query: 141 PGFAKA 146
               +A
Sbjct: 693 DALGRA 698

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 40.3 bits (95), Expect = 0.004
 Identities = 11/44 (25%), Positives = 16/44 (36%)

Query: 87  REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQ 130
           R+ Q+Q   Q  + Q  Q    Q         QQ Q Q++    
Sbjct: 609 RDLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQG 652

Length = 820

>gnl|CDD|148750 pfam07321, YscO, Type III secretion protein YscO

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 62  IFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQ 121
           + + R NE   E   +  + ++   R++ +Q +QQ Q+ ++  Q +  +L  Q  A+ Q 
Sbjct: 76  VGLLRENEASLEQQLAEAKQRLEAERQRLRQARQQLQEARK-AQEKFAELARQEQAEAQA 134

Query: 122 QQQRR 126
           Q+Q  
Sbjct: 135 QRQYL 139

This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis. Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	768
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0286	343	consensus G-protein beta subunit [General function	99.98
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.98
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.96
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.96
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.95
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.95
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.95
KOG0286	343	consensus G-protein beta subunit [General function	99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.95
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.95
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG0266	456	consensus WD40 repeat-containing protein [General	99.95
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.95
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.95
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.94
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.94
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0645	312	consensus WD40 repeat protein [General function pr	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.94
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.93
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.93
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.93
KOG0296	399	consensus Angio-associated migratory cell protein	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.93
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.93
PLN00181	793	protein SPA1-RELATED; Provisional	99.93
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.93
PTZ00421	493	coronin; Provisional	99.93
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.93
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.93
PLN00181	793	protein SPA1-RELATED; Provisional	99.93
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.92
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
PTZ00420	568	coronin; Provisional	99.92
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.92
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.92
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.91
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.91
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.91
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.91
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.91
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.91
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.9
KOG0641	350	consensus WD40 repeat protein [General function pr	99.9
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.9
KOG0289	506	consensus mRNA splicing factor [General function p	99.9
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.9
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.9
PTZ00421	493	coronin; Provisional	99.9
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.9
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.9
KOG0296	399	consensus Angio-associated migratory cell protein	99.9
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.89
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.89
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.89
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.89
PTZ00420	568	coronin; Provisional	99.89
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.88
KOG0643	327	consensus Translation initiation factor 3, subunit	99.88
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.88
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.88
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.87
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.87
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.87
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.87
KOG0267	825	consensus Microtubule severing protein katanin p80	99.87
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.87
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.86
KOG0289	506	consensus mRNA splicing factor [General function p	99.86
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.86
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.86
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.86
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.86
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.85
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.85
KOG0641	350	consensus WD40 repeat protein [General function pr	99.85
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.85
KOG1274	933	consensus WD40 repeat protein [General function pr	99.85
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.85
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.84
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.84
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.84
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.84
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.84
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.84
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.83
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.83
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.83
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.83
KOG0267	825	consensus Microtubule severing protein katanin p80	99.82
KOG2055	514	consensus WD40 repeat protein [General function pr	99.82
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.82
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.82
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.81
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.81
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.81
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.81
KOG1273	405	consensus WD40 repeat protein [General function pr	99.8
KOG0639	705	consensus Transducin-like enhancer of split protei	99.8
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.8
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.8
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.8
KOG1539	910	consensus WD repeat protein [General function pred	99.79
KOG4328	498	consensus WD40 protein [Function unknown]	99.79
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.79
KOG2096	420	consensus WD40 repeat protein [General function pr	99.79
KOG2048	691	consensus WD40 repeat protein [General function pr	99.78
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.78
KOG2096	420	consensus WD40 repeat protein [General function pr	99.78
KOG0639	705	consensus Transducin-like enhancer of split protei	99.77
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.77
KOG1274	933	consensus WD40 repeat protein [General function pr	99.77
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.77
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.76
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.76
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.76
KOG1188	376	consensus WD40 repeat protein [General function pr	99.75
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.75
KOG1539	910	consensus WD repeat protein [General function pred	99.74
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.74
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.74
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.74
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.73
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.73
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.72
KOG0646	476	consensus WD40 repeat protein [General function pr	99.72
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.7
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.7
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.69
KOG4328	498	consensus WD40 protein [Function unknown]	99.69
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.69
COG2319	466	FOG: WD40 repeat [General function prediction only	99.69
KOG2055	514	consensus WD40 repeat protein [General function pr	99.68
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.68
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.68
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.68
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.67
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.67
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.67
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.66
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.65
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.64
COG2319	466	FOG: WD40 repeat [General function prediction only	99.64
KOG2048	691	consensus WD40 repeat protein [General function pr	99.64
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.63
KOG1310	758	consensus WD40 repeat protein [General function pr	99.63
KOG4227	609	consensus WD40 repeat protein [General function pr	99.63
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.63
KOG0649	325	consensus WD40 repeat protein [General function pr	99.62
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.61
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.61
KOG1273	405	consensus WD40 repeat protein [General function pr	99.61
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.61
PRK11028	330	6-phosphogluconolactonase; Provisional	99.6
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.59
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.59
PRK01742	429	tolB translocation protein TolB; Provisional	99.59
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.58
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.57
KOG4227	609	consensus WD40 repeat protein [General function pr	99.57
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.56
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.55
KOG1188	376	consensus WD40 repeat protein [General function pr	99.55
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.54
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.54
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.53
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.52
KOG0649	325	consensus WD40 repeat protein [General function pr	99.52
KOG1310	758	consensus WD40 repeat protein [General function pr	99.51
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.5
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.5
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.5
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.5
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.48
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.47
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.46
PRK02889	427	tolB translocation protein TolB; Provisional	99.45
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.45
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.44
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.44
KOG1963	792	consensus WD40 repeat protein [General function pr	99.44
PRK05137	435	tolB translocation protein TolB; Provisional	99.43
KOG4594	354	consensus Sequence-specific single-stranded-DNA-bi	99.42
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.42
PRK04922	433	tolB translocation protein TolB; Provisional	99.42
PRK03629	429	tolB translocation protein TolB; Provisional	99.42
KOG2321	703	consensus WD40 repeat protein [General function pr	99.41
KOG1963	792	consensus WD40 repeat protein [General function pr	99.4
KOG2139	445	consensus WD40 repeat protein [General function pr	99.39
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.39
PRK01742	429	tolB translocation protein TolB; Provisional	99.39
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.38
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.38
KOG1334	559	consensus WD40 repeat protein [General function pr	99.36
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.36
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.34
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.34
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.31
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.3
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.3
PRK11028	330	6-phosphogluconolactonase; Provisional	99.3
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.27
PRK00178	430	tolB translocation protein TolB; Provisional	99.26
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.26
KOG2139	445	consensus WD40 repeat protein [General function pr	99.26
PRK03629	429	tolB translocation protein TolB; Provisional	99.26
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.26
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.25
PRK05137	435	tolB translocation protein TolB; Provisional	99.25
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.24
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.23
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.23
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.22
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.21
PRK04792	448	tolB translocation protein TolB; Provisional	99.21
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.18
PRK02889	427	tolB translocation protein TolB; Provisional	99.17
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.17
PRK04922	433	tolB translocation protein TolB; Provisional	99.16
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.13
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.13
PRK01029	428	tolB translocation protein TolB; Provisional	99.11
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.1
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.1
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.08
PRK01029	428	tolB translocation protein TolB; Provisional	99.06
KOG4547	541	consensus WD40 repeat-containing protein [General	99.04
KOG2321	703	consensus WD40 repeat protein [General function pr	99.03
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.02
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.01
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.97
COG4946	668	Uncharacterized protein related to the periplasmic	98.95
PRK00178	430	tolB translocation protein TolB; Provisional	98.94
PRK04792	448	tolB translocation protein TolB; Provisional	98.93
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.91
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.9
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.89
PRK04043	419	tolB translocation protein TolB; Provisional	98.87
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.86
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.85
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.85
KOG2315	566	consensus Predicted translation initiation factor	98.84
KOG4547	541	consensus WD40 repeat-containing protein [General	98.84
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.8
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.75
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.72
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.71
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.71
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.69
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.68
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.68
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.67
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.62
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.62
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.61
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.6
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.58
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.57
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.56
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.55
KOG2315	566	consensus Predicted translation initiation factor	98.54
KOG1334	559	consensus WD40 repeat protein [General function pr	98.53
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.53
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.51
COG4946	668	Uncharacterized protein related to the periplasmic	98.49
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	98.47
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.47
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.44
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.44
KOG2314	698	consensus Translation initiation factor 3, subunit	98.41
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.4
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.39
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.39
KOG2695	425	consensus WD40 repeat protein [General function pr	98.39
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.38
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.36
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.35
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.33
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.32
PRK04043	419	tolB translocation protein TolB; Provisional	98.31
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.3
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.3
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.29
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.29
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.28
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.28
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.28
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.25
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.24
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.24
KOG2314	698	consensus Translation initiation factor 3, subunit	98.18
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.17
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.16
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.05
KOG2695	425	consensus WD40 repeat protein [General function pr	98.04
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.02
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.98
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.96
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.96
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.94
PRK02888	635	nitrous-oxide reductase; Validated	97.89
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.88
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.85
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.8
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.79
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.75
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.74
KOG3621	726	consensus WD40 repeat-containing protein [General	97.7
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.69
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.67
COG3391	381	Uncharacterized conserved protein [Function unknow	97.63
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.62
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.62
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.58
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.58
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.52
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.5
PRK02888	635	nitrous-oxide reductase; Validated	97.5
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.5
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.45
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.44
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.42
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.37
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.33
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.28
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.2
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.12
KOG3621	726	consensus WD40 repeat-containing protein [General	97.12
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.11
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.11
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.08
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.07
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.06
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.03
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.02
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	97.01
COG3391	381	Uncharacterized conserved protein [Function unknow	97.0
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.99
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.92
PRK13616	591	lipoprotein LpqB; Provisional	96.9
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.87
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.84
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.82
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.79
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.78
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.78
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.76
PRK13616	591	lipoprotein LpqB; Provisional	96.59
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.57
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.52
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.48
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.44
KOG2444	238	consensus WD40 repeat protein [General function pr	96.38
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.35
PRK10115	686	protease 2; Provisional	96.22
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.19
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.14
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.06
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.03
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.01
KOG2395	644	consensus Protein involved in vacuole import and d	95.82
KOG2444	238	consensus WD40 repeat protein [General function pr	95.77
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.72
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.7
PHA02713	557	hypothetical protein; Provisional	95.67
KOG2395	644	consensus Protein involved in vacuole import and d	95.66
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.65
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.62
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.58
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.57
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	95.57
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.48
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.46
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	95.45
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.37
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.24
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.22
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.19
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.14
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.11
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.08
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.04
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.97
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.96
PHA02713	557	hypothetical protein; Provisional	94.89
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.85
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.83
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.66
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.65
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.49
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.36
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.28
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.07
PF14727	418	PHTB1_N: PTHB1 N-terminus	93.94
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.91
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	93.82
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.8
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.76
PHA03098	534	kelch-like protein; Provisional	93.5
PRK10350	145	hypothetical protein; Provisional	93.46
PF14727	418	PHTB1_N: PTHB1 N-terminus	93.42
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.34
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	93.29
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.23
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.2
PHA03098	534	kelch-like protein; Provisional	92.95
PHA02790	480	Kelch-like protein; Provisional	92.88
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.82
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	92.63
COG5276	370	Uncharacterized conserved protein [Function unknow	92.51
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	92.4
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	92.37
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	92.21
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	92.07
PRK13684	334	Ycf48-like protein; Provisional	91.63
PRK13684	334	Ycf48-like protein; Provisional	91.63
PHA02790	480	Kelch-like protein; Provisional	91.4
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.26
PF11498	468	Activator_LAG-3: Transcriptional activator LAG-3;	91.26
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	90.77
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.45
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.43
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.3
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	89.97
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	89.62
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.6
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	89.09
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	89.02
PLN00033	398	photosystem II stability/assembly factor; Provisio	88.92
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	88.91
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	88.82
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	88.43
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.23
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	88.21
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.0
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	87.94
PF13449	326	Phytase-like: Esterase-like activity of phytase	87.42
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	87.13
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.01
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	86.33
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	86.25
PLN02153	341	epithiospecifier protein	86.19
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	85.83
PRK10115	686	protease 2; Provisional	85.45
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	85.44
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	85.4
COG5167	776	VID27 Protein involved in vacuole import and degra	85.32
COG5276	370	Uncharacterized conserved protein [Function unknow	84.95
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	84.87
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	83.73
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	83.51
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.48
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	83.3
KOG2377	657	consensus Uncharacterized conserved protein [Funct	83.26
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	83.16
COG5167	776	VID27 Protein involved in vacuole import and degra	83.13
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	82.91
KOG2247	615	consensus WD40 repeat-containing protein [General	82.78
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	82.71
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	82.68
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	82.59
TIGR01063	800	gyrA DNA gyrase, A subunit. This model describes t	82.3
PRK10350	145	hypothetical protein; Provisional	82.14
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	81.97
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	81.73
KOG2247	615	consensus WD40 repeat-containing protein [General	81.58
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	81.18
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	80.94
PLN00033	398	photosystem II stability/assembly factor; Provisio	80.31
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	80.19
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	80.11

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.8e-35  Score=309.20  Aligned_cols=248  Identities=26%  Similarity=0.397  Sum_probs=223.7

Q ss_pred             ccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC--CCEEEEEeCCC
Q 004207          500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDK  577 (768)
Q Consensus       500 ~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd--g~~LaSgs~Dg  577 (768)
                      ..+...+..|++||++|.+++|.++..                   ..+.++++|++.|.++.|+|.  +..||||+.||
T Consensus       181 ~~fS~ds~~laT~swsG~~kvW~~~~~-------------------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dg  241 (459)
T KOG0272|consen  181 CSFSRDSKHLATGSWSGLVKVWSVPQC-------------------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADG  241 (459)
T ss_pred             eEeecCCCeEEEeecCCceeEeecCCc-------------------ceeEEEeccccceeeEEEccCCCccceeeeccCC
Confidence            334556789999999999999965433                   457889999999999999996  56899999999


Q ss_pred             cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEE
Q 004207          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC  657 (768)
Q Consensus       578 ~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLa  657 (768)
                      +|++|++++.+++..+.+|...|..++|+|+|++|+|+|.|.+-++||++++.. +....||...|.+|+|+++|. +++
T Consensus       242 tvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~DGS-L~~  319 (459)
T KOG0272|consen  242 TVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQPDGS-LAA  319 (459)
T ss_pred             ceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-hHhhcccccccceeEecCCCc-eee
Confidence            999999999999999999999999999999999999999999999999999775 677889999999999999987 888


Q ss_pred             EEeCCCcEEEEECCCCeeEEEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc---------------
Q 004207          658 SCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ---------------  721 (768)
Q Consensus       658 Sgs~Dg~I~iWDl~sg~~i~~~~~~-~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~---------------  721 (768)
                      ||+.|..-+|||+|+|.++..+.++ ..|..|.|+|+|-.+++|+.|++++|||++.......+.               
T Consensus       320 tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~  399 (459)
T KOG0272|consen  320 TGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE  399 (459)
T ss_pred             ccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccC
Confidence            9999999999999999999999864 569999999999999999999999999998876554443               


Q ss_pred             -----------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 -----------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 -----------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                 ++++|...+..++ .+.+|++.|.++++++++.+|+|++.|.+||+|.
T Consensus       400 g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  400 GYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             CeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence                       8899998887766 6789999999999999999999999999999994

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-33  Score=293.23  Aligned_cols=253  Identities=26%  Similarity=0.419  Sum_probs=216.0

Q ss_pred             cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 004207          494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATG  573 (768)
Q Consensus       494 ~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSg  573 (768)
                      .-++.+.++.+.+..+++|+-|.++|+|+....                   .+..+.++|...|.|++|+|||+.||+|
T Consensus       115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te-------------------Tp~~t~KgH~~WVlcvawsPDgk~iASG  175 (480)
T KOG0271|consen  115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE-------------------TPLFTCKGHKNWVLCVAWSPDGKKIASG  175 (480)
T ss_pred             CCcEEEEEecCCCceEEecCCCceEEeeccCCC-------------------CcceeecCCccEEEEEEECCCcchhhcc
Confidence            334445566777889999999999999954322                   3567788999999999999999999999


Q ss_pred             eCCCcEEEEECCCCeEE-EEeccCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEE
Q 004207          574 GHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD  647 (768)
Q Consensus       574 s~Dg~I~VWdl~t~~~~-~tl~~h~~~V~sl~fsp-----dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sla  647 (768)
                      +.||.|++||.++++.+ ..+.+|...|++++|.|     .+++|++++.||+|+|||+..+.+ +..+.+|..+|+||.
T Consensus       176 ~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~-~~~lsgHT~~VTCvr  254 (480)
T KOG0271|consen  176 SKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC-VRTLSGHTASVTCVR  254 (480)
T ss_pred             ccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE-EEEeccCccceEEEE
Confidence            99999999999988765 67899999999999976     578999999999999999987664 899999999999999


Q ss_pred             EeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----------------------------------------------
Q 004207          648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----------------------------------------------  681 (768)
Q Consensus       648 fsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~----------------------------------------------  681 (768)
                      |--  ..++++|+.|++|++|+...|.+.+++++                                              
T Consensus       255 wGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~  332 (480)
T KOG0271|consen  255 WGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL  332 (480)
T ss_pred             EcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence            974  45899999999999998765432221110                                              


Q ss_pred             ----------------------------------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc------
Q 004207          682 ----------------------------------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ------  721 (768)
Q Consensus       682 ----------------------------------~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~------  721 (768)
                                                        ..-|..+.|+|++.++++++.|..|++||.++++....++      
T Consensus       333 ~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~V  412 (480)
T KOG0271|consen  333 KDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAV  412 (480)
T ss_pred             ccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcccee
Confidence                                              1125779999999999999999999999999987766554      


Q ss_pred             -------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 -------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 -------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                         ++++|++.+.++. .+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus       413 YqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  413 YQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence                               8999999988876 6889999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-32  Score=283.53  Aligned_cols=222  Identities=28%  Similarity=0.453  Sum_probs=199.2

Q ss_pred             eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      ++-..+.+|.++|.|+.|+|+|..|++|+.|.++++||+.+..+.++.++|..+|.||+|+|||+.||+|+.||+|++||
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD  185 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence            34566889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeEEEeecCCCCeEEEEEeCC----CCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEE
Q 004207          626 TENPDYSLRTFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA  700 (768)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~slafsp~----g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llag  700 (768)
                      .++++...+.+.+|...|++++|.|-    +..+|++++.||.|+|||+..+.++..+.+ ...|+|++|--+ ++++++
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySg  264 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSG  264 (480)
T ss_pred             CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEec
Confidence            99999888999999999999999873    234788999999999999999999999886 456999999875 689999


Q ss_pred             EcCCeEEEEECCCceEeeecc-----------------------------------------------------------
Q 004207          701 AIENYISILDVETQVCRLKLQ-----------------------------------------------------------  721 (768)
Q Consensus       701 s~Dg~I~IwD~~t~~~~~~~~-----------------------------------------------------------  721 (768)
                      +.|++|++|+...+.+...+.                                                           
T Consensus       265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD  344 (480)
T KOG0271|consen  265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD  344 (480)
T ss_pred             CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence            999999999998765444332                                                           


Q ss_pred             --eeEEeecCCCc--eEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 --TLELWNMTENK--TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 --~I~iwd~~~~~--~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                        ++.+|+....+  +..+.+|...|+.+.|+||+++||++|-|..|++||
T Consensus       345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~  395 (480)
T KOG0271|consen  345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWD  395 (480)
T ss_pred             CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeee
Confidence              78888865443  336779999999999999999999999999999997

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.5e-32  Score=302.97  Aligned_cols=252  Identities=23%  Similarity=0.406  Sum_probs=217.5

Q ss_pred             cccCccccCCCCEEEeecCCCcEEEeecCCCC--------C-------CCCccccccccCCCceeeEEEEecCCCCCeEE
Q 004207          496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA--------D-------PRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (768)
Q Consensus       496 ~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~--------d-------~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~s  560 (768)
                      .+.+..+.+..+.+|.|-.|..|++|......        .       ..+......+.   ..-...+++.+|.++|+.
T Consensus       380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~---~~~~~~~~L~GH~GPVyg  456 (707)
T KOG0263|consen  380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDD---DSSGTSRTLYGHSGPVYG  456 (707)
T ss_pred             cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccc---cCCceeEEeecCCCceee
Confidence            44556677788899999999999999554211        0       01111122222   222345568899999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCC
Q 004207          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS  640 (768)
Q Consensus       561 l~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~  640 (768)
                      +.|+|+.++|++|+.|++|++|.+.+..++..+.+|..+|+++.|+|.|-||||+|.|++.++|..+... +++.+.+|-
T Consensus       457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-PlRifaghl  535 (707)
T KOG0263|consen  457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK-PLRIFAGHL  535 (707)
T ss_pred             eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC-chhhhcccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999998754 599999999


Q ss_pred             CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207          641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK  719 (768)
Q Consensus       641 ~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~  719 (768)
                      +.|.|+.|||+.. ++++|+.|.+|++||+.+|..++.|.+ .++|.+++|+|+|.+|++|+.|+.|.+||+.++..+. 
T Consensus       536 sDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~-  613 (707)
T KOG0263|consen  536 SDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK-  613 (707)
T ss_pred             cccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh-
Confidence            9999999999966 777999999999999999999999986 5679999999999999999999999999998876543 


Q ss_pred             cceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          720 LQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       720 ~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                     .+.+|.+.|.+|.|+.+|.+||+||.|.+|++||
T Consensus       614 ---------------~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD  647 (707)
T KOG0263|consen  614 ---------------QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD  647 (707)
T ss_pred             ---------------hhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence                           3458999999999999999999999999999997

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.98  E-value=2.2e-30  Score=261.63  Aligned_cols=263  Identities=19%  Similarity=0.315  Sum_probs=228.2

Q ss_pred             ccccCCCCCceEEEEecCCC-Cccc-------ccCccccCCCCEEEeecCCCcEEEeecCCC-CCCCCccccccccCCCc
Q 004207          473 TLQHNGASSKSLLMFGSDGM-GSLT-------SAPNQLTDMDRFVDDGSLDDNVESFLSPDD-ADPRDRVGRSAEVGKGF  543 (768)
Q Consensus       473 ~l~~s~s~~~~~l~~~~~~~-~~~~-------~~~~~l~~~~~~latGS~D~~v~~w~~~~~-~d~~~~~~~~~~~~~~~  543 (768)
                      ..+.+++.+..+++|..... ..++       +-..++.+.+.+||+|+.|....+|..... .++              
T Consensus        68 r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g--------------  133 (343)
T KOG0286|consen   68 RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEG--------------  133 (343)
T ss_pred             CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccc--------------
Confidence            46678888999999998765 2222       226678999999999999999999955422 111              


Q ss_pred             eeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEE
Q 004207          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVR  622 (768)
Q Consensus       544 ~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIr  622 (768)
                      .....+.+.+|++.+.||.|-. ...|+|++.|.++.+||++++..+..+.+|.+.|.++.++| +++.|++|+.|++.+
T Consensus       134 ~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak  212 (343)
T KOG0286|consen  134 NVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK  212 (343)
T ss_pred             cceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence            1233466889999999999987 55788999999999999999999999999999999999999 899999999999999


Q ss_pred             EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEE
Q 004207          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILA  699 (768)
Q Consensus       623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~lla  699 (768)
                      |||++.+. ++++|.+|...|.+|+|+|+|. -|++|++|+++++||+|....+..+.+   ..+|++++|+..|++|++
T Consensus       213 lWD~R~~~-c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfa  290 (343)
T KOG0286|consen  213 LWDVRSGQ-CVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFA  290 (343)
T ss_pred             eeeccCcc-eeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEe
Confidence            99999985 4999999999999999999986 677999999999999999988888876   456899999999999999


Q ss_pred             EEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          700 AAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       700 gs~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |..|..+.+||.-..+.+                ..+.+|++.|+||..+|||.-|+|||.|..|+||.
T Consensus       291 gy~d~~c~vWDtlk~e~v----------------g~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  291 GYDDFTCNVWDTLKGERV----------------GVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eecCCceeEeeccccceE----------------EEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            999999999997655443                34569999999999999999999999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.98  E-value=2e-30  Score=260.75  Aligned_cols=267  Identities=25%  Similarity=0.367  Sum_probs=219.1

Q ss_pred             CccccCCCCCceEEEEecCCC-------------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccc
Q 004207          472 PTLQHNGASSKSLLMFGSDGM-------------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE  538 (768)
Q Consensus       472 ~~l~~s~s~~~~~l~~~~~~~-------------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~  538 (768)
                      ++...++++++.+++|.....             |.+.+....+...+.+..++|+|+++++|+...+            
T Consensus        28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g------------   95 (315)
T KOG0279|consen   28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG------------   95 (315)
T ss_pred             CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC------------
Confidence            356678889999999986643             3455556666777778888999999999955432            


Q ss_pred             cCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC--CCCEEEEEEcCC--CCEEEE
Q 004207          539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPS--LSRLAT  614 (768)
Q Consensus       539 ~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h--~~~V~sl~fspd--g~~LaT  614 (768)
                             +....|.+|...|.+++|++|.+.|++|+.|++|++|++.. .+..++..+  .+.|+|++|+|+  ..+|++
T Consensus        96 -------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs  167 (315)
T KOG0279|consen   96 -------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVS  167 (315)
T ss_pred             -------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence                   34567889999999999999999999999999999999875 555555443  789999999997  789999


Q ss_pred             EeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCC
Q 004207          615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL  694 (768)
Q Consensus       615 gs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~  694 (768)
                      +++|++|+|||+++-+. ...+.+|.+.++.++++|||. ++++|+.||.+.+||++.++++..+.+...|.+++|+|+ 
T Consensus       168 ~s~DktvKvWnl~~~~l-~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspn-  244 (315)
T KOG0279|consen  168 ASWDKTVKVWNLRNCQL-RTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPN-  244 (315)
T ss_pred             ccCCceEEEEccCCcch-hhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCC-
Confidence            99999999999998664 788899999999999999987 777999999999999999999999999999999999998 


Q ss_pred             CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          695 GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       695 ~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .+.+++..+..|+|||+++..++..+. +.+   ...   ......-...+++|+++|..|++|-.|+.|++|.
T Consensus       245 rywL~~at~~sIkIwdl~~~~~v~~l~-~d~---~g~---s~~~~~~~clslaws~dG~tLf~g~td~~irv~q  311 (315)
T KOG0279|consen  245 RYWLCAATATSIKIWDLESKAVVEELK-LDG---IGP---SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ  311 (315)
T ss_pred             ceeEeeccCCceEEEeccchhhhhhcc-ccc---ccc---ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence            677777777889999999987765543 111   000   1122233456789999999999999999999994

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.96  E-value=7.7e-30  Score=267.19  Aligned_cols=245  Identities=24%  Similarity=0.444  Sum_probs=206.0

Q ss_pred             ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004207          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (768)
Q Consensus       502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~V  581 (768)
                      -.+.++-|.+|+..|.+.+|+                   +..|....++.+|..+|.++.|++++.++++|+.+|.|++
T Consensus       104 WtPeGRRLltgs~SGEFtLWN-------------------g~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKy  164 (464)
T KOG0284|consen  104 WTPEGRRLLTGSQSGEFTLWN-------------------GTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKY  164 (464)
T ss_pred             EcCCCceeEeecccccEEEec-------------------CceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEe
Confidence            345678899999999999993                   3344445667899999999999999999999999999999


Q ss_pred             EECCCCeEEEEecc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe
Q 004207          582 WCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (768)
Q Consensus       582 Wdl~t~~~~~tl~~-h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs  660 (768)
                      |+..-.. +..+.. |...|++++|+|+...|+||+.||+|+|||....+. .+.+.+|.-.|.|++|||... ++++++
T Consensus       165 Wqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-e~vL~GHgwdVksvdWHP~kg-Liasgs  241 (464)
T KOG0284|consen  165 WQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGHGWDVKSVDWHPTKG-LIASGS  241 (464)
T ss_pred             cccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-hheeccCCCCcceeccCCccc-eeEEcc
Confidence            9976443 444444 458999999999999999999999999999987665 567799999999999999955 888999


Q ss_pred             CCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc------------------
Q 004207          661 NNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ------------------  721 (768)
Q Consensus       661 ~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~------------------  721 (768)
                      .|..|++||.++++|+.++.. ...|..+.|++++++|++++.|..+++||+++.+....++                  
T Consensus       242 kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~l  321 (464)
T KOG0284|consen  242 KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESL  321 (464)
T ss_pred             CCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccc
Confidence            999999999999999998875 5669999999999999999999999999998543322221                  


Q ss_pred             --------eeEEeecCCCceE-E-eccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 --------TLELWNMTENKTL-T-LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 --------~I~iwd~~~~~~~-~-l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                              .|..|.+...+.+ . -.+|...|++++|+|-|.+|++|+.|.++++|.
T Consensus       322 ftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  322 FTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             eeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence                    6667776633333 2 348999999999999999999999999999993

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.96  E-value=4e-28  Score=244.18  Aligned_cols=231  Identities=16%  Similarity=0.228  Sum_probs=195.5

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      ....+.+++.|.++.+|....+              +...-..++.+.+|...|..+..++||.+.++++.|+++++||+
T Consensus        27 ~~~~l~sasrDk~ii~W~L~~d--------------d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl   92 (315)
T KOG0279|consen   27 NSDILVSASRDKTIIVWKLTSD--------------DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL   92 (315)
T ss_pred             CCceEEEcccceEEEEEEeccC--------------ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEe
Confidence            4568899999999999965443              12223457788999999999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee-cCCCCeEEEEEeCCC-CeEEEEEeCC
Q 004207          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSK-EDLLCSCDNN  662 (768)
Q Consensus       585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~-~h~~~V~slafsp~g-~~lLaSgs~D  662 (768)
                      .+++....|.+|...|.+++|++|.+.+++|+.|++|++|++..... ..... .+.+-|.|+.|+|+. +.+|++++.|
T Consensus        93 ~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D  171 (315)
T KOG0279|consen   93 ATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPNESNPIIVSASWD  171 (315)
T ss_pred             cCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCCCCCcEEEEccCC
Confidence            99999999999999999999999999999999999999999986432 33322 237889999999985 5688899999


Q ss_pred             CcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCC
Q 004207          663 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK  741 (768)
Q Consensus       663 g~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~  741 (768)
                      ++|++||+++.+....+.+ .+.++.+.++|||...++|+.||.+.+||++.+++...                 ..|..
T Consensus       172 ktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys-----------------l~a~~  234 (315)
T KOG0279|consen  172 KTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS-----------------LEAFD  234 (315)
T ss_pred             ceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe-----------------ccCCC
Confidence            9999999999888877765 45689999999999999999999999999988766433                 35888


Q ss_pred             CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          742 LVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       742 ~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .|.+++|+|+.-+| ++..+..|+|||
T Consensus       235 ~v~sl~fspnrywL-~~at~~sIkIwd  260 (315)
T KOG0279|consen  235 IVNSLCFSPNRYWL-CAATATSIKIWD  260 (315)
T ss_pred             eEeeEEecCCceeE-eeccCCceEEEe
Confidence            99999999976555 455566799997

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=2.4e-27  Score=269.95  Aligned_cols=256  Identities=26%  Similarity=0.470  Sum_probs=217.7

Q ss_pred             cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 004207          494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATG  573 (768)
Q Consensus       494 ~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSg  573 (768)
                      +..+....+...+.++++++.|+.+++|......+                 .....+.+|...|.+++|+||+++++++
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~l~~h~~~v~~~~fs~d~~~l~s~  221 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----------------NLLRELSGHTRGVSDVAFSPDGSYLLSG  221 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-----------------hhhccccccccceeeeEECCCCcEEEEe
Confidence            44444566677888999999999999996622210                 2334457999999999999999999999


Q ss_pred             eCCCcEEEEEC-CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC
Q 004207          574 GHDKKAVLWCT-ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK  652 (768)
Q Consensus       574 s~Dg~I~VWdl-~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g  652 (768)
                      +.|++|+|||+ ..+..+.++++|...|++++|+|+++++++|+.|++|+|||+++++. +..+.+|...|++++|++++
T Consensus       222 s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~-~~~l~~hs~~is~~~f~~d~  300 (456)
T KOG0266|consen  222 SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC-VRKLKGHSDGISGLAFSPDG  300 (456)
T ss_pred             cCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE-EEeeeccCCceEEEEECCCC
Confidence            99999999999 55689999999999999999999999999999999999999999664 89999999999999999998


Q ss_pred             CeEEEEEeCCCcEEEEECCCCe--eEEEEecC--C-CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc------
Q 004207          653 EDLLCSCDNNSEIRYWSINNGS--CAGVFKCQ--S-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ------  721 (768)
Q Consensus       653 ~~lLaSgs~Dg~I~iWDl~sg~--~i~~~~~~--~-~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~------  721 (768)
                      . +|++++.|+.|+|||+.++.  ++..+...  . .++++.|+|++.++++++.|+.+++||+....+.....      
T Consensus       301 ~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~  379 (456)
T KOG0266|consen  301 N-LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLV  379 (456)
T ss_pred             C-EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcc
Confidence            7 55577889999999999998  55665542  2 57999999999999999999999999998764333221      


Q ss_pred             ----------------------eeEEeecCCCceE-EeccC-CCCeeEEEEeCCCCEEEEEE--CCCcEEEeC
Q 004207          722 ----------------------TLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASAS--HDKCVKIWK  768 (768)
Q Consensus       722 ----------------------~I~iwd~~~~~~~-~l~~H-~~~I~sla~spdg~~LaSgs--~DG~V~IWD  768 (768)
                                            .|.+||..++..+ .+.+| ...|..++|++...++++++  .|+.|++|+
T Consensus       380 ~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~  452 (456)
T KOG0266|consen  380 RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK  452 (456)
T ss_pred             eeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence                                  8899999865444 67789 88999999999999999998  799999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.96  E-value=2.3e-27  Score=235.17  Aligned_cols=241  Identities=23%  Similarity=0.370  Sum_probs=202.8

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      ..-+|++++.|.+||+|....+                   .+..++....+.|..+.+.||++.||+++. -.|++||+
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG-------------------~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~   68 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTG-------------------ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDL   68 (311)
T ss_pred             CceEEEeccCcceeeeeehhcC-------------------eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEc
Confidence            4568899999999999955433                   356667777788999999999999999986 57999999


Q ss_pred             CCCe--EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC
Q 004207          585 ESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (768)
Q Consensus       585 ~t~~--~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D  662 (768)
                      .+++  ++.++++|+..|++|.|..+|+.++||++||+++|||++...+ .+.+ .|..+|++|..+|+...|| +|+.+
T Consensus        69 ~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~-qR~~-~~~spVn~vvlhpnQteLi-s~dqs  145 (311)
T KOG0315|consen   69 NSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC-QRNY-QHNSPVNTVVLHPNQTELI-SGDQS  145 (311)
T ss_pred             cCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc-chhc-cCCCCcceEEecCCcceEE-eecCC
Confidence            8865  5889999999999999999999999999999999999998543 3444 4779999999999977555 99999


Q ss_pred             CcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-------------------
Q 004207          663 SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-------------------  721 (768)
Q Consensus       663 g~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-------------------  721 (768)
                      |.|++||+....+.+.+..  ...|.++.+.|+|..++++...|..++|++-+......+.                   
T Consensus       146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP  225 (311)
T KOG0315|consen  146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP  225 (311)
T ss_pred             CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC
Confidence            9999999998877766543  4568899999999999999999999999986542221111                   


Q ss_pred             ------------eeEEeecCCC--ceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 ------------TLELWNMTEN--KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 ------------~I~iwd~~~~--~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                  +++||+.++-  ..+.+.+|...+..++||.|+.||+||+.|+.+++||
T Consensus       226 d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~  286 (311)
T KOG0315|consen  226 DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD  286 (311)
T ss_pred             CCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence                        8999998876  2235779999999999999999999999999999997

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1e-28  Score=259.99  Aligned_cols=215  Identities=30%  Similarity=0.480  Sum_probs=195.5

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCC
Q 004207          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENP  629 (768)
Q Consensus       552 ~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVWDl~t~  629 (768)
                      .+.+.+|..+.|+.|++.||||+.+|.++||+..+...+.++.+|+..|.++.|+|.  +..||||+.||+|++|++++.
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e  251 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE  251 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence            467789999999999999999999999999999999999999999999999999996  568999999999999999975


Q ss_pred             CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISI  708 (768)
Q Consensus       630 ~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~I  708 (768)
                      . ++..+.+|...|..++|||+|. +|+|++.|.+-++||++++..+.-..+ ..+|.+++|+++|..+++|+.|..-+|
T Consensus       252 ~-~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv  329 (459)
T KOG0272|consen  252 T-PLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV  329 (459)
T ss_pred             c-chhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence            4 4889999999999999999988 566999999999999999887766665 566999999999999999999999999


Q ss_pred             EECCCceEeeecc-------------------------eeEEeecCCCceE-EeccCCCCeeEEEEeC-CCCEEEEEECC
Q 004207          709 LDVETQVCRLKLQ-------------------------TLELWNMTENKTL-TLSAHDKLVSSLAAST-VNGMVASASHD  761 (768)
Q Consensus       709 wD~~t~~~~~~~~-------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~sp-dg~~LaSgs~D  761 (768)
                      ||++++.++..+.                         +++|||++....+ ++.+|.+.|+.|+|+| .|.+|+|+|.|
T Consensus       330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD  409 (459)
T KOG0272|consen  330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD  409 (459)
T ss_pred             eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence            9999998876654                         8999999876554 7889999999999998 67899999999


Q ss_pred             CcEEEeC
Q 004207          762 KCVKIWK  768 (768)
Q Consensus       762 G~V~IWD  768 (768)
                      ++++||.
T Consensus       410 ~t~kiWs  416 (459)
T KOG0272|consen  410 NTVKIWS  416 (459)
T ss_pred             cceeeec
Confidence            9999994

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.3e-27  Score=245.79  Aligned_cols=261  Identities=20%  Similarity=0.333  Sum_probs=228.2

Q ss_pred             ccccCCCCCceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCce
Q 004207          473 TLQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT  544 (768)
Q Consensus       473 ~l~~s~s~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~  544 (768)
                      .+...++++.++.+|.....        ++.++-.+.++..+.+++++|.|-.+.+|+..                  ..
T Consensus       121 ~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~------------------~~  182 (406)
T KOG0295|consen  121 ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD------------------TF  182 (406)
T ss_pred             eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH------------------HH
Confidence            45566778889999987654        34445577788888999999988888888432                  12


Q ss_pred             eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (768)
Q Consensus       545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVW  624 (768)
                      +..++.+.+|...|.+++|-|-|.+|++++.|.+|+.|++.++-++.++.+|...|..++.+.||.++++|+.|.+|++|
T Consensus       183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW  262 (406)
T KOG0295|consen  183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW  262 (406)
T ss_pred             HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence            45567778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCCeeEEEeecCCCCeEEEEEeCC--------------CCeEEEEEeCCCcEEEEECCCCeeEEEEecC-CCeeEEE
Q 004207          625 DTENPDYSLRTFTGHSTTVMSLDFHPS--------------KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMR  689 (768)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~slafsp~--------------g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-~~i~sl~  689 (768)
                      -+.++.+ ...+..|..+|.|++|.|.              +..++++++.|++|++||+.++.|+.++.++ .-|..++
T Consensus       263 ~~~t~~~-k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a  341 (406)
T KOG0295|consen  263 VVATKQC-KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA  341 (406)
T ss_pred             Eeccchh-hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeE
Confidence            9998764 6788889999999999772              2358889999999999999999999999875 4599999


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          690 FQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       690 fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |+|.|.||+++..|+++++||+.+..|...                +.+|..-|++++|+.+..+++||+-|.++++|.
T Consensus       342 f~p~Gkyi~ScaDDktlrvwdl~~~~cmk~----------------~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  342 FSPGGKYILSCADDKTLRVWDLKNLQCMKT----------------LEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             EcCCCeEEEEEecCCcEEEEEeccceeeec----------------cCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            999999999999999999999999888543                338999999999999999999999999999995

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.95  E-value=1.8e-27  Score=245.62  Aligned_cols=223  Identities=22%  Similarity=0.453  Sum_probs=201.8

Q ss_pred             ceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 004207          543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR  622 (768)
Q Consensus       543 ~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIr  622 (768)
                      ..++..+.+.+|.+.|.|+++.|...+|++|+.|++|+|||+.++.+..++.+|...|..|++++...||++++.|+.|+
T Consensus       139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK  218 (460)
T ss_pred             CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence            45667788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEE
Q 004207          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA  701 (768)
Q Consensus       623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags  701 (768)
                      .||++..+. ++.+.+|-+.|.|++.+|.-+ +|++|+.|.+++|||+|+...+.++.+ ...|..+.+.|....+++++
T Consensus       219 CwDLe~nkv-IR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S  296 (460)
T KOG0285|consen  219 CWDLEYNKV-IRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS  296 (460)
T ss_pred             EEechhhhh-HHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec
Confidence            999998776 899999999999999999855 777999999999999999999999985 56799999999989999999


Q ss_pred             cCCeEEEEECCCceEeeecc------------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEE
Q 004207          702 IENYISILDVETQVCRLKLQ------------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA  756 (768)
Q Consensus       702 ~Dg~I~IwD~~t~~~~~~~~------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~La  756 (768)
                      .|++|++||++.++....+.                        .++.|++..+..+ .+.+|...|++++.+.|+ +++
T Consensus       297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~  375 (460)
T KOG0285|consen  297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLV  375 (460)
T ss_pred             CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCc-eEE
Confidence            99999999998876544332                        6788888887765 577999999999988764 788


Q ss_pred             EEECCCcEEEeC
Q 004207          757 SASHDKCVKIWK  768 (768)
Q Consensus       757 Sgs~DG~V~IWD  768 (768)
                      +|+++|.+.+||
T Consensus       376 ~G~dng~~~fwd  387 (460)
T KOG0285|consen  376 SGGDNGSIMFWD  387 (460)
T ss_pred             EcCCceEEEEEe
Confidence            999999999997

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.95  E-value=4e-27  Score=264.60  Aligned_cols=244  Identities=25%  Similarity=0.344  Sum_probs=202.5

Q ss_pred             cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 004207          494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATG  573 (768)
Q Consensus       494 ~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSg  573 (768)
                      +-.+....+.+..+||.++|.|++||+|..                   .++..+..+++|..+|.++.|+|-|-|||||
T Consensus       451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl-------------------~t~s~~V~y~GH~~PVwdV~F~P~GyYFata  511 (707)
T KOG0263|consen  451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSL-------------------DTWSCLVIYKGHLAPVWDVQFAPRGYYFATA  511 (707)
T ss_pred             CCceeeeeecccccceeeccCCcceeeeec-------------------ccceeEEEecCCCcceeeEEecCCceEEEec
Confidence            444556677889999999999999999933                   2345677889999999999999999999999


Q ss_pred             eCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCC
Q 004207          574 GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  653 (768)
Q Consensus       574 s~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~  653 (768)
                      +.|++.++|..+...+++.+.+|-..|.|+.|+|+..|++|||.|.+||+||+.++.. ++.|.||.++|++|+|+|+|.
T Consensus       512 s~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~Gr  590 (707)
T KOG0263|consen  512 SHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-VRIFTGHKGPVTALAFSPCGR  590 (707)
T ss_pred             CCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE-EEEecCCCCceEEEEEcCCCc
Confidence            9999999999999999999999999999999999999999999999999999999886 999999999999999999987


Q ss_pred             eEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEe------
Q 004207          654 DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW------  726 (768)
Q Consensus       654 ~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iw------  726 (768)
                       .|++|+.|+.|++||+.+++.+..+.. .+.|.++.|+.+|+.|++++.|+.|++||+...........+...      
T Consensus       591 -~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~  669 (707)
T KOG0263|consen  591 -YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQ  669 (707)
T ss_pred             -eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccc
Confidence             677999999999999999999887765 456899999999999999999999999999765443111111111      


Q ss_pred             --ecCCCceEEeccCCCCeeEEEEeCCCCEEEEE
Q 004207          727 --NMTENKTLTLSAHDKLVSSLAASTVNGMVASA  758 (768)
Q Consensus       727 --d~~~~~~~~l~~H~~~I~sla~spdg~~LaSg  758 (768)
                        +....-+..+..-..+|.+|.|.-..-.|++|
T Consensus       670 ~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  670 ENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             cCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence              01111122444556689999998765444444

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.95  E-value=3e-26  Score=231.85  Aligned_cols=229  Identities=24%  Similarity=0.406  Sum_probs=199.0

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      ..+.|+++|.||.+-+|++...                   ..++.++-....|..|+|+|.|+++|+|+-|....||++
T Consensus        66 Dsr~ivSaSqDGklIvWDs~Tt-------------------nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l  126 (343)
T KOG0286|consen   66 DSRRIVSASQDGKLIVWDSFTT-------------------NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL  126 (343)
T ss_pred             CcCeEEeeccCCeEEEEEcccc-------------------cceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence            4678999999999999955333                   345666777788999999999999999999999999999


Q ss_pred             CCC------eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207          585 ESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (768)
Q Consensus       585 ~t~------~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS  658 (768)
                      .+.      ...+.+.+|++.+.|+.|-+| ..|+|+|.|.++.+||++++.. +..|.+|.+.|.+|++.|...+.|++
T Consensus       127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~-~~~f~GH~gDV~slsl~p~~~ntFvS  204 (343)
T KOG0286|consen  127 STRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQ-TQVFHGHTGDVMSLSLSPSDGNTFVS  204 (343)
T ss_pred             ccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceE-EEEecCCcccEEEEecCCCCCCeEEe
Confidence            865      455778999999999999985 5789999999999999999876 89999999999999999955568889


Q ss_pred             EeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEec
Q 004207          659 CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLS  737 (768)
Q Consensus       659 gs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~  737 (768)
                      |+.|+..++||+|.+.++..|.+ ...|.+++|.|+|.-+++|+.|++.++||++....+.      +|.        -.
T Consensus       205 g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a------~ys--------~~  270 (343)
T KOG0286|consen  205 GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELA------VYS--------HD  270 (343)
T ss_pred             cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEe------eec--------cC
Confidence            99999999999999999999986 5679999999999999999999999999999865432      222        11


Q ss_pred             cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          738 AHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       738 ~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .-...|++|+|+..|++|++|..|.++.|||
T Consensus       271 ~~~~gitSv~FS~SGRlLfagy~d~~c~vWD  301 (343)
T KOG0286|consen  271 SIICGITSVAFSKSGRLLFAGYDDFTCNVWD  301 (343)
T ss_pred             cccCCceeEEEcccccEEEeeecCCceeEee
Confidence            2235699999999999999999999999998

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=1.6e-25  Score=231.11  Aligned_cols=245  Identities=29%  Similarity=0.516  Sum_probs=208.4

Q ss_pred             cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (768)
Q Consensus       503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VW  582 (768)
                      .+.+.++++++.|+.+.+|......                   ....+..|...|.++.|++++++|++++.||.|++|
T Consensus        18 ~~~~~~l~~~~~~g~i~i~~~~~~~-------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~   78 (289)
T cd00200          18 SPDGKLLATGSGDGTIKVWDLETGE-------------------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW   78 (289)
T ss_pred             cCCCCEEEEeecCcEEEEEEeeCCC-------------------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEE
Confidence            4456789999999999999654321                   344566888999999999999999999999999999


Q ss_pred             ECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC
Q 004207          583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (768)
Q Consensus       583 dl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D  662 (768)
                      |+.+++.+..+..|...|.++.|++++.++++++.|+.|++||+++++. ...+..|...|.+++|+|++. ++++++.|
T Consensus        79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~  156 (289)
T cd00200          79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-LTTLRGHTDWVNSVAFSPDGT-FVASSSQD  156 (289)
T ss_pred             EcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-EEEeccCCCcEEEEEEcCcCC-EEEEEcCC
Confidence            9998888888889998999999999988899888899999999997554 666778999999999999854 66677779


Q ss_pred             CcEEEEECCCCeeEEEEecCC-CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc--------------------
Q 004207          663 SEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------------------  721 (768)
Q Consensus       663 g~I~iWDl~sg~~i~~~~~~~-~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~--------------------  721 (768)
                      +.|++||+++++.+..+..+. .+.++.|+|++..+++++.++.|++||+++......+.                    
T Consensus       157 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  236 (289)
T cd00200         157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS  236 (289)
T ss_pred             CcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE
Confidence            999999999888888777644 79999999999899999999999999998654433331                    


Q ss_pred             -----eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 -----TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 -----~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                           .+.+|++..+... .+..|...|.+++|++++.+|++++.||.|+|||
T Consensus       237 ~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence                 6888998865544 5668889999999999999999999999999997

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.8e-26  Score=229.10  Aligned_cols=262  Identities=21%  Similarity=0.324  Sum_probs=209.1

Q ss_pred             ccCCCCCceEEEEecCC------------CCcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCC
Q 004207          475 QHNGASSKSLLMFGSDG------------MGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG  542 (768)
Q Consensus       475 ~~s~s~~~~~l~~~~~~------------~~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~  542 (768)
                      ..+.+.++.+..|+..+            .+...+..++..+++++|++||+|.++.+|.-.                 +
T Consensus        30 lAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~-----------------~   92 (312)
T KOG0645|consen   30 LASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE-----------------D   92 (312)
T ss_pred             EEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC-----------------C
Confidence            34455566666666552            245667788889999999999999999999332                 3


Q ss_pred             ceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004207          543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (768)
Q Consensus       543 ~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t---~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg  619 (768)
                      -.|+.+..+.+|...|.|++|+++|.|||+|+.|+.|-||.+..   .++...+..|+..|..+.|+|...+|+++|+|.
T Consensus        93 ~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn  172 (312)
T KOG0645|consen   93 GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN  172 (312)
T ss_pred             CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC
Confidence            35678999999999999999999999999999999999998863   567889999999999999999999999999999


Q ss_pred             cEEEEECCC-C-CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEE
Q 004207          620 TVRVWDTEN-P-DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI  697 (768)
Q Consensus       620 tIrVWDl~t-~-~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~l  697 (768)
                      +|++|+-.. . -.++.++.+|...|.+++|++.|. .+++|+.|++|+||-..+.   ....+...+..+.|.  .+.|
T Consensus       173 TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~I  246 (312)
T KOG0645|consen  173 TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVI  246 (312)
T ss_pred             eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEecCCcceEeeeeccC---cchhcccceEeeeec--ccce
Confidence            999998763 2 245789999999999999999986 5669999999999986621   111234678889998  5689


Q ss_pred             EEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC-CCEEEEEECCCcEEEeC
Q 004207          698 LAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK  768 (768)
Q Consensus       698 lags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd-g~~LaSgs~DG~V~IWD  768 (768)
                      ++++.|+.|++|..........      |++..   ..-..|...|++|.|+|. .+.|++|+.||.|++|.
T Consensus       247 aS~ggD~~i~lf~~s~~~d~p~------~~l~~---~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~  309 (312)
T KOG0645|consen  247 ASGGGDDAIRLFKESDSPDEPS------WNLLA---KKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE  309 (312)
T ss_pred             EeccCCCEEEEEEecCCCCCch------HHHHH---hhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence            9999999999997653211111      11000   022378899999999995 68999999999999994

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.95  E-value=2.1e-26  Score=245.11  Aligned_cols=235  Identities=17%  Similarity=0.317  Sum_probs=201.9

Q ss_pred             CceEEEEecCCCCcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEE
Q 004207          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (768)
Q Consensus       481 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~s  560 (768)
                      +.+.+.|..+               +.+||+|+.||.+++|.....                    .+.++..|+++|.+
T Consensus       237 dVT~L~Wn~~---------------G~~LatG~~~G~~riw~~~G~--------------------l~~tl~~HkgPI~s  281 (524)
T KOG0273|consen  237 DVTSLDWNND---------------GTLLATGSEDGEARIWNKDGN--------------------LISTLGQHKGPIFS  281 (524)
T ss_pred             CcceEEecCC---------------CCeEEEeecCcEEEEEecCch--------------------hhhhhhccCCceEE
Confidence            5666777664               569999999999999954322                    35567789999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCe-----------------------------------------EEEEeccCCCC
Q 004207          561 CHFSPDGKLLATGGHDKKAVLWCTESFT-----------------------------------------VKSTLEEHTQW  599 (768)
Q Consensus       561 l~fSpdg~~LaSgs~Dg~I~VWdl~t~~-----------------------------------------~~~tl~~h~~~  599 (768)
                      +.|+.+|.||++++.|+++.+||..+++                                         ++.++.+|.+.
T Consensus       282 lKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~  361 (524)
T KOG0273|consen  282 LKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGE  361 (524)
T ss_pred             EEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCc
Confidence            9999999999999999999999985432                                         23345679999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC--------CeEEEEEeCCCcEEEEECC
Q 004207          600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK--------EDLLCSCDNNSEIRYWSIN  671 (768)
Q Consensus       600 V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g--------~~lLaSgs~Dg~I~iWDl~  671 (768)
                      |.++.|+|.+.+|++||.|+|++||....... ...+.+|...|+.+.|+|+|        ...+++++.|++|++||+.
T Consensus       362 V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~-~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~  440 (524)
T KOG0273|consen  362 VNALKWNPTGSLLASCSDDGTLKIWSMGQSNS-VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE  440 (524)
T ss_pred             eEEEEECCCCceEEEecCCCeeEeeecCCCcc-hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc
Confidence            99999999999999999999999999876554 78889999999999999865        3568899999999999999


Q ss_pred             CCeeEEEE-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeC
Q 004207          672 NGSCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAST  750 (768)
Q Consensus       672 sg~~i~~~-~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~sp  750 (768)
                      .+.++++| ++..+|.+++|+|++.++++|+.|+.|.||+..+++.....                 ...+.|..|+|+.
T Consensus       441 ~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~-----------------~~~~~Ifel~Wn~  503 (524)
T KOG0273|consen  441 SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY-----------------QGTGGIFELCWNA  503 (524)
T ss_pred             CCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee-----------------cCCCeEEEEEEcC
Confidence            99999999 67889999999999999999999999999998887665433                 3456699999999


Q ss_pred             CCCEEEEEECCCcEEEeC
Q 004207          751 VNGMVASASHDKCVKIWK  768 (768)
Q Consensus       751 dg~~LaSgs~DG~V~IWD  768 (768)
                      +|.+|..+-.||.|+|-|
T Consensus       504 ~G~kl~~~~sd~~vcvld  521 (524)
T KOG0273|consen  504 AGDKLGACASDGSVCVLD  521 (524)
T ss_pred             CCCEEEEEecCCCceEEE
Confidence            999999999999999864

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.6e-27  Score=246.36  Aligned_cols=257  Identities=21%  Similarity=0.284  Sum_probs=217.7

Q ss_pred             CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 004207          493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT  572 (768)
Q Consensus       493 ~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaS  572 (768)
                      ++..+--..+...+.++|++|.|.+.-+|....+.                .++..+++.+|..+|..+.||||.++|++
T Consensus       223 htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~----------------~~kl~~tlvgh~~~V~yi~wSPDdryLla  286 (519)
T KOG0293|consen  223 HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV----------------HFKLKKTLVGHSQPVSYIMWSPDDRYLLA  286 (519)
T ss_pred             CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc----------------ceeeeeeeecccCceEEEEECCCCCeEEe
Confidence            44444455567788999999999999999654431                25677889999999999999999999999


Q ss_pred             EeCCCcEEEEECCCCeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCC-CCeEEEEEeC
Q 004207          573 GGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHP  650 (768)
Q Consensus       573 gs~Dg~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~-~~V~slafsp  650 (768)
                      |+.|..+.+||+.++.+...+. +|...+.+++|.|||..+++|+.|++|..||++...  +..+.+.. -.|.+++..+
T Consensus       287 Cg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait~  364 (519)
T KOG0293|consen  287 CGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAITY  364 (519)
T ss_pred             cCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEcC
Confidence            9999999999999999887774 345789999999999999999999999999998543  34444432 4699999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc---------
Q 004207          651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ---------  721 (768)
Q Consensus       651 ~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~---------  721 (768)
                      ||+.+++++ .|..|++|+.++...+..+..+.+|++++++.++.++++.-.+..|.+||++..+.+.++.         
T Consensus       365 Dgk~vl~v~-~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiI  443 (519)
T KOG0293|consen  365 DGKYVLLVT-VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFII  443 (519)
T ss_pred             CCcEEEEEe-cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEE
Confidence            999888655 6999999999988877778888999999999999999999999999999998654433222         


Q ss_pred             -------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 004207          722 -------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK  768 (768)
Q Consensus       722 -------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IWD  768 (768)
                                         .|+||+..+++++ ++.+|...|+||+|+|.. .+||++|+||+|+||.
T Consensus       444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg  511 (519)
T KOG0293|consen  444 RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG  511 (519)
T ss_pred             EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence                               8999999988876 688999999999999977 5899999999999994

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.95  E-value=1.1e-26  Score=239.91  Aligned_cols=254  Identities=16%  Similarity=0.267  Sum_probs=215.3

Q ss_pred             CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 004207          493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT  572 (768)
Q Consensus       493 ~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaS  572 (768)
                      +.-.+.+..+++.+.++++|+.|+++++|+...+                   ....++.+|...|..+++|+-..||++
T Consensus       150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg-------------------~LkltltGhi~~vr~vavS~rHpYlFs  210 (460)
T KOG0285|consen  150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG-------------------QLKLTLTGHIETVRGVAVSKRHPYLFS  210 (460)
T ss_pred             ccceEEEEeeCCCceeEEecCCCceeEEEEcccC-------------------eEEEeecchhheeeeeeecccCceEEE
Confidence            4455667888999999999999999999965433                   345677899999999999999999999


Q ss_pred             EeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC
Q 004207          573 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK  652 (768)
Q Consensus       573 gs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g  652 (768)
                      ++.|+.|+.||++..+.++.+.+|-..|+|++.+|.-..|+||+.|.++||||+++... +..+.+|..+|.++.+.|..
T Consensus       211 ~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~-V~~l~GH~~~V~~V~~~~~d  289 (460)
T KOG0285|consen  211 AGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS-VHVLSGHTNPVASVMCQPTD  289 (460)
T ss_pred             ecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce-EEEecCCCCcceeEEeecCC
Confidence            99999999999999999999999999999999999999999999999999999998654 89999999999999999886


Q ss_pred             CeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc----------
Q 004207          653 EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ----------  721 (768)
Q Consensus       653 ~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~----------  721 (768)
                      .. +++|+.|++|++||++.|+...++.+ ...+.+++.+|....+++++.| .|+-|++..+.....+.          
T Consensus       290 pq-vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~  367 (460)
T KOG0285|consen  290 PQ-VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLS  367 (460)
T ss_pred             Cc-eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeee
Confidence            64 45999999999999999988777765 5568999999986655555554 58888887765544422          


Q ss_pred             --------------eeEEeecCCCceEEec---------cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 --------------TLELWNMTENKTLTLS---------AHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 --------------~I~iwd~~~~~~~~l~---------~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                    .+.+||..++..+...         ..+..|++.+|...+..|++|..|.+|++|+
T Consensus       368 ~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  368 VNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK  437 (460)
T ss_pred             eccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence                          7888998887655211         2345799999999999999999999999995

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.95  E-value=1.7e-26  Score=245.93  Aligned_cols=254  Identities=21%  Similarity=0.321  Sum_probs=206.7

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~  585 (768)
                      +.++++|+.|...++|...+...... .............   +. ...+..|++++|+.+|.+||+|+.||.++||+..
T Consensus       191 ~~llasg~~~s~ari~~l~e~~~~~~-~q~~lrh~~~~~~---~s-~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~  265 (524)
T KOG0273|consen  191 DGLLASGSGDSTARIWNLLENSNIGS-TQLVLRHCIREGG---KS-VPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD  265 (524)
T ss_pred             hhhhhccCCccceeeeeehhhccccc-hhhhhhhhhhhhc---cc-CCccCCcceEEecCCCCeEEEeecCcEEEEEecC
Confidence            34889999999999997654211000 0000000000000   01 1223569999999999999999999999999964


Q ss_pred             CCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcE
Q 004207          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (768)
Q Consensus       586 t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I  665 (768)
                       +..+.++..|.++|.++.|+..|+||++++.|+++.+||..++.. ...+.-|..+-..|.|-.+.  -|++++.|+.|
T Consensus       266 -G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i  341 (524)
T KOG0273|consen  266 -GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-KQQFEFHSAPALDVDWQSND--EFATSSTDGCI  341 (524)
T ss_pred             -chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-EEeeeeccCCccceEEecCc--eEeecCCCceE
Confidence             678889999999999999999999999999999999999998775 66777788877889998664  47799999999


Q ss_pred             EEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-----------------------
Q 004207          666 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-----------------------  721 (768)
Q Consensus       666 ~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-----------------------  721 (768)
                      +|+.+....++.++.+ ++.|.++.|.|.+..|++++.|++++||......+...+.                       
T Consensus       342 ~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~  421 (524)
T KOG0273|consen  342 HVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNM  421 (524)
T ss_pred             EEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcC
Confidence            9999998888888875 6779999999999999999999999999987665544433                       


Q ss_pred             -----------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 -----------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 -----------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                 +|++||+..+.++ ++..|..+|.+|+|+|+++|||+|+.||.|+||+
T Consensus       422 ~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws  480 (524)
T KOG0273|consen  422 NLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS  480 (524)
T ss_pred             CceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence                       8999999988776 6779999999999999999999999999999996

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.95  E-value=2.6e-26  Score=233.12  Aligned_cols=249  Identities=17%  Similarity=0.278  Sum_probs=210.2

Q ss_pred             ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 004207          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD  576 (768)
Q Consensus       497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D  576 (768)
                      +....+++.+.++++|+.|..|.+|+...+-                  +.+..+++|.++|..+.|.+|+..|++++.|
T Consensus        50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc------------------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtD  111 (338)
T KOG0265|consen   50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGDC------------------ENFWVLKGHSGAVMELHGMRDGSHILSCGTD  111 (338)
T ss_pred             EEEEEECCCCCeEeecCCcceEEEEeccccc------------------cceeeeccccceeEeeeeccCCCEEEEecCC
Confidence            3344556678899999999999999654331                  2244566999999999999999999999999


Q ss_pred             CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeE
Q 004207          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL  655 (768)
Q Consensus       577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg-~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~l  655 (768)
                      ++|++||+++++.++.+++|...|+++.-+.-| .++.+++.|++++|||+++.+. +.++. ....++++.|...+..+
T Consensus       112 k~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~~-~kyqltAv~f~d~s~qv  189 (338)
T KOG0265|consen  112 KTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTFE-NKYQLTAVGFKDTSDQV  189 (338)
T ss_pred             ceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhccc-cceeEEEEEecccccce
Confidence            999999999999999999999999999854444 4678889999999999997554 55554 35679999999887766


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee----cc---------
Q 004207          656 LCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK----LQ---------  721 (768)
Q Consensus       656 LaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~----~~---------  721 (768)
                      + +|+-|+.|++||++...+.+++.+ ...|+.+..++++.++++-+.|+++++||++......+    +.         
T Consensus       190 ~-sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn  268 (338)
T KOG0265|consen  190 I-SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN  268 (338)
T ss_pred             e-eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence            6 899999999999999999999987 45699999999999999999999999999976532222    21         


Q ss_pred             --------------------eeEEeecCC-CceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207          722 --------------------TLELWNMTE-NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  766 (768)
Q Consensus       722 --------------------~I~iwd~~~-~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~I  766 (768)
                                          .+.+||... .-++.+.+|.+.|++++|+|...+|.+++.|.+|++
T Consensus       269 lL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  269 LLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             cceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence                                788999877 445588999999999999999999999999999976

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.4e-26  Score=252.66  Aligned_cols=235  Identities=21%  Similarity=0.341  Sum_probs=213.0

Q ss_pred             CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK  578 (768)
Q Consensus       499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~  578 (768)
                      ++.+++.+.++.++-..|.|.+|+....                   ..++.+.-..-+|.++.|-.-.+++++|+.|..
T Consensus        18 sVd~HPtePw~la~LynG~V~IWnyetq-------------------tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~   78 (794)
T KOG0276|consen   18 SVDFHPTEPWILAALYNGDVQIWNYETQ-------------------TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQ   78 (794)
T ss_pred             eeecCCCCceEEEeeecCeeEEEecccc-------------------eeeeeeeecccchhhheeeeccceEEEecCCce
Confidence            4556777889999999999999976443                   345556666778999999999999999999999


Q ss_pred             EEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207          579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (768)
Q Consensus       579 I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS  658 (768)
                      |+||+..+++.+..++.|.+.|.||+.+|.-.+++|+|.|-+|++||.+....+..++.+|...|.+|+|+|.....|++
T Consensus        79 IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS  158 (794)
T KOG0276|consen   79 IRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFAS  158 (794)
T ss_pred             EEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceee
Confidence            99999999999999999999999999999999999999999999999999888899999999999999999999999999


Q ss_pred             EeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCC--CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEE
Q 004207          659 CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL--GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLT  735 (768)
Q Consensus       659 gs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~--~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~  735 (768)
                      |+-|++|+||.+.+..+..++.+ ..+|.+++|-+.+  .++++|+.|.+|+|||..+..|+..                
T Consensus       159 ~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T----------------  222 (794)
T KOG0276|consen  159 ASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT----------------  222 (794)
T ss_pred             eeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH----------------
Confidence            99999999999999999999886 5679999998754  4899999999999999999887654                


Q ss_pred             eccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          736 LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       736 l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +.+|...|..++|+|.-.+|+|||+||+|+||+
T Consensus       223 LeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh  255 (794)
T KOG0276|consen  223 LEGHTNNVSFVFFHPELPIIISGSEDGTVRIWN  255 (794)
T ss_pred             hhcccccceEEEecCCCcEEEEecCCccEEEec
Confidence            449999999999999999999999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=1.6e-25  Score=255.00  Aligned_cols=206  Identities=32%  Similarity=0.529  Sum_probs=182.6

Q ss_pred             EEEecC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207          548 FQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (768)
Q Consensus       548 ~~~l~~-H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVW  624 (768)
                      ...+.. |...|+|+.|+++|++|++++.|+.+++|+..+.+  ....+.+|...|.+++|+|++.++++++.|++|+||
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW  230 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence            444444 47899999999999999999999999999998777  777888999999999999999999999999999999


Q ss_pred             ECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-CCeeEEEEecCCCEEEEEEcC
Q 004207          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE  703 (768)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-~~i~sl~fsp~~~~llags~D  703 (768)
                      |++.....++++.+|...|++++|+|++ .++++|+.|++|+|||+++++++..+..+ ..|++++|++++.+|++++.|
T Consensus       231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d  309 (456)
T KOG0266|consen  231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD  309 (456)
T ss_pred             eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence            9966656789999999999999999999 68889999999999999999999999874 579999999999999999999


Q ss_pred             CeEEEEECCCceEeeecceeEEeecCCCceEEeccCCC--CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          704 NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       704 g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~--~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +.|+|||+.++...              ....+..+..  .++++.|+|++.+|++++.|+.|++||
T Consensus       310 ~~i~vwd~~~~~~~--------------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~  362 (456)
T KOG0266|consen  310 GTIRVWDLETGSKL--------------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWD  362 (456)
T ss_pred             ccEEEEECCCCcee--------------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEE
Confidence            99999999987632              0112224443  499999999999999999999999997

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=4.8e-28  Score=248.69  Aligned_cols=218  Identities=22%  Similarity=0.428  Sum_probs=188.3

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      .+..+++|..|.+|++|+..                   .+...+.+.+|++.|.|+.|  |.+.|++|+.|.+|+|||+
T Consensus       206 DD~kiVSGlrDnTikiWD~n-------------------~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv  264 (499)
T KOG0281|consen  206 DDEKIVSGLRDNTIKIWDKN-------------------SLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDV  264 (499)
T ss_pred             cchhhhcccccCceEEeccc-------------------cHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEec
Confidence            35578999999999999432                   23446778899999999999  6779999999999999999


Q ss_pred             CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe--eEEEeecCCCCeEEEEEeCCCCeEEEEEeCC
Q 004207          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (768)
Q Consensus       585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~--~~~~~~~h~~~V~slafsp~g~~lLaSgs~D  662 (768)
                      ++++++.++..|...|..+.|+  ..+++|++.|.+|.|||+..+..  +.+.+.||...|..+.|+.   .++++++.|
T Consensus       265 ~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgD  339 (499)
T KOG0281|consen  265 NTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGD  339 (499)
T ss_pred             cCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCC
Confidence            9999999999999999999998  45999999999999999987652  2367889999999999984   378899999


Q ss_pred             CcEEEEECCCCeeEEEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCC
Q 004207          663 SEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK  741 (768)
Q Consensus       663 g~I~iWDl~sg~~i~~~~~~-~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~  741 (768)
                      .+|++|++.++++++++.++ .+|.|+.+.  +..+++|++|++|++||+..+.|...                +.+|+.
T Consensus       340 RTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRv----------------LeGHEe  401 (499)
T KOG0281|consen  340 RTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRV----------------LEGHEE  401 (499)
T ss_pred             ceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHH----------------HhchHH
Confidence            99999999999999999864 456666554  56899999999999999988876443                449999


Q ss_pred             CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          742 LVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       742 ~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      -|.|+.|.  .+.|++|+.||+|+|||
T Consensus       402 LvRciRFd--~krIVSGaYDGkikvWd  426 (499)
T KOG0281|consen  402 LVRCIRFD--NKRIVSGAYDGKIKVWD  426 (499)
T ss_pred             hhhheeec--CceeeeccccceEEEEe
Confidence            99999997  67899999999999997

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.4e-27  Score=242.59  Aligned_cols=238  Identities=24%  Similarity=0.404  Sum_probs=207.7

Q ss_pred             cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 004207          494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATG  573 (768)
Q Consensus       494 ~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSg  573 (768)
                      +..+..+.+++...++++++.|.+|++|+...+                   .....+++|++.|.+|+|+..|++||++
T Consensus       108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg-------------------~~e~~LrGHt~sv~di~~~a~Gk~l~tc  168 (406)
T KOG0295|consen  108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETG-------------------ELERSLRGHTDSVFDISFDASGKYLATC  168 (406)
T ss_pred             ccceeeeeeccCceEEEEecCCceEEEEEccch-------------------hhhhhhhccccceeEEEEecCccEEEec
Confidence            334445556777889999999999999966443                   2256788999999999999999999999


Q ss_pred             eCCCcEEEEECCC-CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC
Q 004207          574 GHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK  652 (768)
Q Consensus       574 s~Dg~I~VWdl~t-~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g  652 (768)
                      +.|-.+++||..+ .++++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++.+ +.++.+|..-|..++.+.||
T Consensus       169 SsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c-v~t~~~h~ewvr~v~v~~DG  247 (406)
T KOG0295|consen  169 SSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC-VKTFPGHSEWVRMVRVNQDG  247 (406)
T ss_pred             CCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee-EEeccCchHhEEEEEecCCe
Confidence            9999999999887 678888899999999999999999999999999999999999765 99999999999999999997


Q ss_pred             CeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCC---------------CEEEEEEcCCeEEEEECCCceE
Q 004207          653 EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL---------------GRILAAAIENYISILDVETQVC  716 (768)
Q Consensus       653 ~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~---------------~~llags~Dg~I~IwD~~t~~~  716 (768)
                      . ++++|+.|.+|++|-+.++.|...+.. +..|.+++|.|..               .++++++.|++|++||+.++.|
T Consensus       248 t-i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c  326 (406)
T KOG0295|consen  248 T-IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC  326 (406)
T ss_pred             e-EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE
Confidence            5 999999999999999999988777664 5668888887741               3788888899999999888766


Q ss_pred             eeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          717 RLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       717 ~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .                +++.+|.+.|..++|+|.|+||+++.+|++++|||
T Consensus       327 L----------------~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwd  362 (406)
T KOG0295|consen  327 L----------------FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWD  362 (406)
T ss_pred             E----------------EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEE
Confidence            3                46679999999999999999999999999999997

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.95  E-value=1.6e-25  Score=241.01  Aligned_cols=240  Identities=22%  Similarity=0.368  Sum_probs=195.9

Q ss_pred             EEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004207          509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT  588 (768)
Q Consensus       509 latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~  588 (768)
                      +++|+.|.+|.+|                   .+..|+....++.|..-|.|+.|+|||.+||+++.||+|.|||-++++
T Consensus       163 i~T~sdDn~v~ff-------------------eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge  223 (603)
T KOG0318|consen  163 IATGSDDNTVAFF-------------------EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE  223 (603)
T ss_pred             EEeccCCCeEEEe-------------------eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc
Confidence            5667777777766                   456677778889999999999999999999999999999999999999


Q ss_pred             EEEEec---cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe----------------------------------
Q 004207          589 VKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----------------------------------  631 (768)
Q Consensus       589 ~~~tl~---~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~----------------------------------  631 (768)
                      .+..+.   +|.+.|++|.|+||+..|+|++.|.+++|||+.+.+.                                  
T Consensus       224 ~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in  303 (603)
T KOG0318|consen  224 KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTIN  303 (603)
T ss_pred             EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEE
Confidence            999997   8999999999999999999999999999999975432                                  


Q ss_pred             --------eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee----------------------------
Q 004207          632 --------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----------------------------  675 (768)
Q Consensus       632 --------~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~----------------------------  675 (768)
                              .+..+.+|...|+++..++++. .|++|+.||.|.-||..++..                            
T Consensus       304 ~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~  382 (603)
T KOG0318|consen  304 YLNPSDPSVLKVISGHNKSITALTVSPDGK-TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGW  382 (603)
T ss_pred             EecccCCChhheecccccceeEEEEcCCCC-EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEec
Confidence                    1234568999999999999986 555999999999999864321                            


Q ss_pred             ---EEEEec---------------------------------------------------CCCeeEEEEecCCCEEEEEE
Q 004207          676 ---AGVFKC---------------------------------------------------QSGATQMRFQPRLGRILAAA  701 (768)
Q Consensus       676 ---i~~~~~---------------------------------------------------~~~i~sl~fsp~~~~llags  701 (768)
                         ++.+..                                                   .-...+++++|++.++++|+
T Consensus       383 Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG  462 (603)
T KOG0318|consen  383 DDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG  462 (603)
T ss_pred             CCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec
Confidence               011100                                                   00124678899999999999


Q ss_pred             cCCeEEEEECCCceEeeecc---------------------------eeEEeecCCCceE--EeccCCCCeeEEEEeCCC
Q 004207          702 IENYISILDVETQVCRLKLQ---------------------------TLELWNMTENKTL--TLSAHDKLVSSLAASTVN  752 (768)
Q Consensus       702 ~Dg~I~IwD~~t~~~~~~~~---------------------------~I~iwd~~~~~~~--~l~~H~~~I~sla~spdg  752 (768)
                      .|+.|+||.+..........                           .+.+||..+.+..  .+.-|...|.||+|+|+.
T Consensus       463 ~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n  542 (603)
T KOG0318|consen  463 QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN  542 (603)
T ss_pred             ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc
Confidence            99999999997754221110                           7888998877664  344599999999999999


Q ss_pred             CEEEEEECCCcEEEeC
Q 004207          753 GMVASASHDKCVKIWK  768 (768)
Q Consensus       753 ~~LaSgs~DG~V~IWD  768 (768)
                      .+|||||.|-.|.||+
T Consensus       543 ~~vATGSlDt~Viiys  558 (603)
T KOG0318|consen  543 KLVATGSLDTNVIIYS  558 (603)
T ss_pred             eEEEeccccceEEEEE
Confidence            9999999999999995

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=3e-26  Score=254.92  Aligned_cols=232  Identities=24%  Similarity=0.374  Sum_probs=200.2

Q ss_pred             CCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEE
Q 004207          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLW  582 (768)
Q Consensus       504 ~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VW  582 (768)
                      ..+.++++||.|.++++|...+.               ......+....+|+..|.+++++..+. +|+++|.|++|++|
T Consensus       375 ~~g~llat~sKD~svilWr~~~~---------------~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W  439 (775)
T KOG0319|consen  375 SSGDLLATGSKDKSVILWRLNNN---------------CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLW  439 (775)
T ss_pred             ccCcEEEEecCCceEEEEEecCC---------------cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEe
Confidence            45569999999999999966222               122234555679999999999977554 79999999999999


Q ss_pred             ECCCCeE-----E----EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCC
Q 004207          583 CTESFTV-----K----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  653 (768)
Q Consensus       583 dl~t~~~-----~----~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~  653 (768)
                      ++...+.     +    .+...|...|+||+++|+.++|||||.|++.+||+++... ...++.+|...|.||.|++...
T Consensus       440 ~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-l~~vLsGH~RGvw~V~Fs~~dq  518 (775)
T KOG0319|consen  440 DLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-LLGVLSGHTRGVWCVSFSKNDQ  518 (775)
T ss_pred             cCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce-EEEEeeCCccceEEEEeccccc
Confidence            9876221     1    1335799999999999999999999999999999999655 4899999999999999999854


Q ss_pred             eEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCc
Q 004207          654 DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENK  732 (768)
Q Consensus       654 ~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~  732 (768)
                       +++||+.|++|+||.+.+++|+.+|.+ ...|..+.|-.++..|++++.||-|++|++.+..|..              
T Consensus       519 -~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~--------------  583 (775)
T KOG0319|consen  519 -LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM--------------  583 (775)
T ss_pred             -eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh--------------
Confidence             888999999999999999999999995 5668999999999999999999999999999988854              


Q ss_pred             eEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          733 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       733 ~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                        ++..|.+.|++++.++.+.+++||+.||.|.+|+
T Consensus       584 --tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  584 --TLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             --hhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence              4459999999999999999999999999999995

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.94  E-value=3.3e-26  Score=232.41  Aligned_cols=205  Identities=26%  Similarity=0.470  Sum_probs=188.7

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~-t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      ++..+.+|.+.|+++.|+|+|.+||+|+.|..|.+|++. ..+-..++++|+++|..+.|.+|++.|++++.|++|+.||
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence            455678999999999999999999999999999999954 3455678889999999999999999999999999999999


Q ss_pred             CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCe
Q 004207          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY  705 (768)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~  705 (768)
                      +++++. ++.+.+|...|.+++-...|..++++++.|+++++||+|...+++++.....++++.|...+..+++|+-|+.
T Consensus       119 ~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~  197 (338)
T KOG0265|consen  119 AETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND  197 (338)
T ss_pred             ccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence            999886 8889999999999997777888999999999999999999999999988889999999999999999999999


Q ss_pred             EEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          706 ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       706 I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |++||++.....+                ++.+|.+.|+.+..+++|.++.+-+.|.+|++||
T Consensus       198 ikvWd~r~~d~~~----------------~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd  244 (338)
T KOG0265|consen  198 IKVWDLRKNDGLY----------------TLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWD  244 (338)
T ss_pred             eeeeccccCcceE----------------EeecccCceeeEEeccCCCccccccccceEEEEE
Confidence            9999998766543                4569999999999999999999999999999997

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.94  E-value=2.5e-26  Score=245.59  Aligned_cols=238  Identities=19%  Similarity=0.300  Sum_probs=197.3

Q ss_pred             cccccCccccC-CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 004207          494 SLTSAPNQLTD-MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT  572 (768)
Q Consensus       494 ~~~~~~~~l~~-~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaS  572 (768)
                      +-+++.+.+-+ ...++.+++.|+.|++|.+.++.                  ..++++.+|..+|.+++|+.+|..|++
T Consensus       214 ~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~------------------~~lrtf~gH~k~Vrd~~~s~~g~~fLS  275 (503)
T KOG0282|consen  214 TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR------------------RCLRTFKGHRKPVRDASFNNCGTSFLS  275 (503)
T ss_pred             ccccchhhhccceeeEEEecCCCceEEEEEEecCc------------------ceehhhhcchhhhhhhhccccCCeeee
Confidence            44455555555 78899999999999999665431                  457889999999999999999999999


Q ss_pred             EeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCC
Q 004207          573 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS  651 (768)
Q Consensus       573 gs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg-~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~  651 (768)
                      ++.|+.|++||+++|+++..+.. ...++|+.|+|++ +.|++|+.|+.|+.||+++++. +..+..|-+.|..+.|-++
T Consensus       276 ~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-vqeYd~hLg~i~~i~F~~~  353 (503)
T KOG0282|consen  276 ASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-VQEYDRHLGAILDITFVDE  353 (503)
T ss_pred             eecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-HHHHHhhhhheeeeEEccC
Confidence            99999999999999999998864 4578999999987 8999999999999999999885 7888889999999999999


Q ss_pred             CCeEEEEEeCCCcEEEEECCCCee--------------------------------EEEEec-----------------C
Q 004207          652 KEDLLCSCDNNSEIRYWSINNGSC--------------------------------AGVFKC-----------------Q  682 (768)
Q Consensus       652 g~~lLaSgs~Dg~I~iWDl~sg~~--------------------------------i~~~~~-----------------~  682 (768)
                      +.. +++.++|++|+||+.+....                                +..+..                 .
T Consensus       354 g~r-FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va  432 (503)
T KOG0282|consen  354 GRR-FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA  432 (503)
T ss_pred             Cce-EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc
Confidence            875 55888899999999874321                                112211                 1


Q ss_pred             CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECC
Q 004207          683 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHD  761 (768)
Q Consensus       683 ~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~D  761 (768)
                      +..+.+.|+|+|.+|++|..||.+.+||.++.+.+.                .+.+|+..+..+.|+|.. ..||||+.|
T Consensus       433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~----------------~lkah~~~ci~v~wHP~e~Skvat~~w~  496 (503)
T KOG0282|consen  433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVS----------------KLKAHDQPCIGVDWHPVEPSKVATCGWD  496 (503)
T ss_pred             CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhh----------------ccccCCcceEEEEecCCCcceeEecccC
Confidence            234568888998888888889988888888755433                445899999999999975 689999999


Q ss_pred             CcEEEeC
Q 004207          762 KCVKIWK  768 (768)
Q Consensus       762 G~V~IWD  768 (768)
                      |.|++||
T Consensus       497 G~Ikiwd  503 (503)
T KOG0282|consen  497 GLIKIWD  503 (503)
T ss_pred             ceeEecC
Confidence            9999997

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=1.8e-24  Score=240.79  Aligned_cols=296  Identities=22%  Similarity=0.327  Sum_probs=231.2

Q ss_pred             CCccccCCCCCceEEEEecCCCCccc----------ccCccccCCCCEEEeecCCCcEEEeecCCCC----------CCC
Q 004207          471 RPTLQHNGASSKSLLMFGSDGMGSLT----------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDA----------DPR  530 (768)
Q Consensus       471 ~~~l~~s~s~~~~~l~~~~~~~~~~~----------~~~~~l~~~~~~latGS~D~~v~~w~~~~~~----------d~~  530 (768)
                      +..+...++++-+..+|..++...+.          +...-+.....-+.+-+.||.+.+|.....+          ++.
T Consensus       156 DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~  235 (893)
T KOG0291|consen  156 DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGS  235 (893)
T ss_pred             CCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccc
Confidence            33566777778888888776653211          1111122233345678899999999554211          111


Q ss_pred             CccccccccCC----Cce-eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEE
Q 004207          531 DRVGRSAEVGK----GFT-FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF  605 (768)
Q Consensus       531 ~~~~~~~~~~~----~~~-~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~f  605 (768)
                      +......+...    .+. ......+......|+|++|++..+.||+|-..|...+|.+....+++.+.-...+|..+.|
T Consensus       236 ~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~  315 (893)
T KOG0291|consen  236 DDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSF  315 (893)
T ss_pred             ccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEe
Confidence            11111111110    111 1112334444578999999999999999999999999999999999999877788999999


Q ss_pred             cCCCCEEEEEeCC-CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CC
Q 004207          606 SPSLSRLATSSAD-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QS  683 (768)
Q Consensus       606 spdg~~LaTgs~D-gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~  683 (768)
                      +..|..|+.|+.. |.+-||++.+..+ +....+|...+++++++|||. ++++|++||.|+|||..++-|+.+|.. ..
T Consensus       316 N~tGDWiA~g~~klgQLlVweWqsEsY-VlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTFteHts  393 (893)
T KOG0291|consen  316 NSTGDWIAFGCSKLGQLLVWEWQSESY-VLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTEHTS  393 (893)
T ss_pred             cccCCEEEEcCCccceEEEEEeeccce-eeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEeccCCC
Confidence            9999999998765 7999999998776 667788999999999999987 777999999999999999999999975 66


Q ss_pred             CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc---------------------------eeEEeecCCCceE-E
Q 004207          684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ---------------------------TLELWNMTENKTL-T  735 (768)
Q Consensus       684 ~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~---------------------------~I~iwd~~~~~~~-~  735 (768)
                      .|+.+.|+..++.+++.+.||+|+.||+....+...+.                           .|.+|++.+|+++ .
T Consensus       394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi  473 (893)
T KOG0291|consen  394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI  473 (893)
T ss_pred             ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence            79999999999999999999999999997765544432                           8999999999998 5


Q ss_pred             eccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          736 LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       736 l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +.+|+++|.+++|+|++..|+++|.|.+|++||
T Consensus       474 LsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~  506 (893)
T KOG0291|consen  474 LSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD  506 (893)
T ss_pred             hcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence            779999999999999999999999999999997

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.4e-24  Score=217.94  Aligned_cols=224  Identities=23%  Similarity=0.425  Sum_probs=189.2

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEe-cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l-~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      +.++|+++.|..|++|.....                -++.....+ .+|+..|.+|+|+|.|++||+|+.|.++.||.-
T Consensus        27 g~ilAscg~Dk~vriw~~~~~----------------~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k   90 (312)
T KOG0645|consen   27 GVILASCGTDKAVRIWSTSSG----------------DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKK   90 (312)
T ss_pred             ceEEEeecCCceEEEEecCCC----------------CcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeec
Confidence            668999999999999955431                112333333 479999999999999999999999999999975


Q ss_pred             C--CCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--eeEEEeecCCCCeEEEEEeCCCCeEEEEEe
Q 004207          585 E--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (768)
Q Consensus       585 ~--t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~--~~~~~~~~h~~~V~slafsp~g~~lLaSgs  660 (768)
                      .  +.+++.++++|...|.|++|+++|++||||+.|+.|.||.+....  .++..+..|...|..+.|||... +|++|+
T Consensus        91 ~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~S  169 (312)
T KOG0645|consen   91 EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCS  169 (312)
T ss_pred             CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEec
Confidence            4  467899999999999999999999999999999999999997433  35678899999999999999854 888999


Q ss_pred             CCCcEEEEECC---CCeeEEEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEe
Q 004207          661 NNSEIRYWSIN---NGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTL  736 (768)
Q Consensus       661 ~Dg~I~iWDl~---sg~~i~~~~~~-~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l  736 (768)
                      .|.+|++|+-.   ...++.++..+ ..|.+++|++.|..+++++.|++|+||...+...                    
T Consensus       170 YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~--------------------  229 (312)
T KOG0645|consen  170 YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS--------------------  229 (312)
T ss_pred             cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc--------------------
Confidence            99999999766   34678888764 4799999999999999999999999997653211                    


Q ss_pred             ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          737 SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       737 ~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .-|...++.++|.  ...|+|++.|+.|+||.
T Consensus       230 ~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~  259 (312)
T KOG0645|consen  230 GMHSRALYDVPWD--NGVIASGGGDDAIRLFK  259 (312)
T ss_pred             hhcccceEeeeec--ccceEeccCCCEEEEEE
Confidence            1477889999998  67899999999999984

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=4.1e-26  Score=226.18  Aligned_cols=245  Identities=18%  Similarity=0.237  Sum_probs=212.5

Q ss_pred             ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004207          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (768)
Q Consensus       502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~V  581 (768)
                      +.+.+.|+.++|.|+.-.+-.                   +.+-.=+.+|.+|.+.|++.+++.+...-|+++.|-+.+|
T Consensus        25 itp~g~flisa~kd~~pmlr~-------------------g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv   85 (334)
T KOG0278|consen   25 ITPDGYFLISASKDGKPMLRN-------------------GDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV   85 (334)
T ss_pred             CCCCceEEEEeccCCCchhcc-------------------CCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence            467888999999888754431                   1122236788999999999999988888999999999999


Q ss_pred             EECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeC
Q 004207          582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (768)
Q Consensus       582 Wdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~  661 (768)
                      ||.-++..+..+. |..-|.+++|+.|.++|+||+.++.+||||++..+.+...+.+|.+.|..+.|......+| +...
T Consensus        86 w~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSad  163 (334)
T KOG0278|consen   86 WDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSAD  163 (334)
T ss_pred             hhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEE-eecc
Confidence            9999999998885 8889999999999999999999999999999999888899999999999999998766555 6688


Q ss_pred             CCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc--------------------
Q 004207          662 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------------------  721 (768)
Q Consensus       662 Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~--------------------  721 (768)
                      |++||+||.+++..+..+....+|+++.++++|. +++.+..+.|.+||..+...+..+.                    
T Consensus       164 d~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~-ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaG  242 (334)
T KOG0278|consen  164 DKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR-ILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAG  242 (334)
T ss_pred             CCceEEEEeccCcEEEEEecCCCCcceeeccCCC-EEEEecCceeEEeccccccceeeccCccccccccccCCCceEEec
Confidence            9999999999999999999999999999999965 5666777889999998876554433                    


Q ss_pred             ----eeEEeecCCCceEEe--ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 ----TLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 ----~I~iwd~~~~~~~~l--~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                          .++.||..++..+..  .+|.++|.||.|+|+|...++||.||+|+||.
T Consensus       243 ged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ  295 (334)
T KOG0278|consen  243 GEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ  295 (334)
T ss_pred             CcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence                677889888877644  69999999999999999999999999999993

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.94  E-value=1.1e-24  Score=234.58  Aligned_cols=254  Identities=19%  Similarity=0.386  Sum_probs=215.9

Q ss_pred             CCcccccCccccCCCCEEEeecCCCcEEEeecCCC------------------------------CCCCCccccccccCC
Q 004207          492 MGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD------------------------------ADPRDRVGRSAEVGK  541 (768)
Q Consensus       492 ~~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~------------------------------~d~~~~~~~~~~~~~  541 (768)
                      .|.+.+....+.+.+.|+|+|...|+||+|.....                              .++++++++.+-.+.
T Consensus        57 EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS  136 (603)
T KOG0318|consen   57 EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDS  136 (603)
T ss_pred             cccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecC
Confidence            36777778888999999999999999999964431                              244555665555555


Q ss_pred             CceeeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCc
Q 004207          542 GFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT  620 (768)
Q Consensus       542 ~~~~~~~~~l~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dgt  620 (768)
                      +..   +-.+.+|...|.+|+|-|... .++||+.|++|.+|+-.-.+...++..|...|.|++|+|||.+|+|++.||+
T Consensus       137 G~S---vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk  213 (603)
T KOG0318|consen  137 GNS---VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK  213 (603)
T ss_pred             CCc---cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence            543   445679999999999999877 4999999999999999888999999999999999999999999999999999


Q ss_pred             EEEEECCCCCeeEEEee---cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC----eeEEEEecC
Q 004207          621 VRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG----ATQMRFQPR  693 (768)
Q Consensus       621 IrVWDl~t~~~~~~~~~---~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~----i~sl~fsp~  693 (768)
                      |.+||-.+++. +..+.   +|.+.|.+|+|+||+..++ +++.|.+++|||+.+.+++.++.....    -..+.|.  
T Consensus       214 i~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--  289 (603)
T KOG0318|consen  214 IYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--  289 (603)
T ss_pred             EEEEcCCCccE-EEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--
Confidence            99999999886 66665   8999999999999987555 899999999999999999999987544    3456676  


Q ss_pred             CCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          694 LGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       694 ~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ...|++.+.+|+|.+++......                ...+.+|...|+++..++++.+|++|+.||.|.-||
T Consensus       290 kd~lItVSl~G~in~ln~~d~~~----------------~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~  348 (603)
T KOG0318|consen  290 KDHLITVSLSGTINYLNPSDPSV----------------LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD  348 (603)
T ss_pred             CCeEEEEEcCcEEEEecccCCCh----------------hheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence            45899999999999998876542                335669999999999999999999999999999996

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.5e-25  Score=253.98  Aligned_cols=220  Identities=24%  Similarity=0.365  Sum_probs=185.2

Q ss_pred             eEEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--------------------------------------
Q 004207          546 TEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--------------------------------------  586 (768)
Q Consensus       546 ~~~~~l~-~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t--------------------------------------  586 (768)
                      .....+. +|.+.|.|+.||+||+|||+||.|+.|+||.+..                                      
T Consensus       257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~  336 (712)
T KOG0283|consen  257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT  336 (712)
T ss_pred             EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence            3445566 9999999999999999999999999999997644                                      


Q ss_pred             ----------------------CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeE
Q 004207          587 ----------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM  644 (768)
Q Consensus       587 ----------------------~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~  644 (768)
                                            .+++..+.+|.+.|.+|.|+.+ .+|++++.|+|||+|++.... ++.+|. |...|+
T Consensus       337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-CL~~F~-HndfVT  413 (712)
T KOG0283|consen  337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-CLKVFS-HNDFVT  413 (712)
T ss_pred             cccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc-eeeEEe-cCCeeE
Confidence                                  0122345689999999999987 589999999999999999755 477776 999999


Q ss_pred             EEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc---
Q 004207          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ---  721 (768)
Q Consensus       645 slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~---  721 (768)
                      ||+|+|..+++|++|+-||.|+||++...+.+.....+.-|++++|.|+|.+.++|+.+|.+++|+....+......   
T Consensus       414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~  493 (712)
T KOG0283|consen  414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL  493 (712)
T ss_pred             EEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence            99999999999999999999999999998888888888999999999999999999999999999997765443322   


Q ss_pred             -------------------------------eeEEeecCCCceE-EeccCCC--CeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          722 -------------------------------TLELWNMTENKTL-TLSAHDK--LVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       722 -------------------------------~I~iwd~~~~~~~-~l~~H~~--~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                                                     .|+|+|..+..++ .+.++..  .-....|+.||++|+++++|..|+||
T Consensus       494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW  573 (712)
T KOG0283|consen  494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW  573 (712)
T ss_pred             ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence                                           7888888655544 4444332  33567889999999999999999999


Q ss_pred             C
Q 004207          768 K  768 (768)
Q Consensus       768 D  768 (768)
                      +
T Consensus       574 ~  574 (712)
T KOG0283|consen  574 K  574 (712)
T ss_pred             e
Confidence            6

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=1.5e-26  Score=235.65  Aligned_cols=256  Identities=23%  Similarity=0.368  Sum_probs=210.0

Q ss_pred             ccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 004207          500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA  579 (768)
Q Consensus       500 ~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I  579 (768)
                      ..+.+.+.|+++||.||.|++|+...+.-.           ++..+..-..+--|.++|.|++||.|...||+|+.||.|
T Consensus       219 A~FSPDgqyLvsgSvDGFiEVWny~~GKlr-----------KDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI  287 (508)
T KOG0275|consen  219 ARFSPDGQYLVSGSVDGFIEVWNYTTGKLR-----------KDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI  287 (508)
T ss_pred             eeeCCCCceEeeccccceeeeehhccchhh-----------hhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence            345567789999999999999988766432           233333344556788999999999999999999999999


Q ss_pred             EEEECCCCeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207          580 VLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (768)
Q Consensus       580 ~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS  658 (768)
                      +||.+.+|.|++.+. .|+..|+|+.|+.|+..+++++.|-+|||.-+.+++. +..+.+|.+.|+...|.++|.+++ +
T Consensus       288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~ii-s  365 (508)
T KOG0275|consen  288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHII-S  365 (508)
T ss_pred             EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEE-E
Confidence            999999999999886 8999999999999999999999999999999999886 899999999999999999988666 8


Q ss_pred             EeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCceEee----------------
Q 004207          659 CDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRL----------------  718 (768)
Q Consensus       659 gs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~-~~llags~Dg~I~IwD~~t~~~~~----------------  718 (768)
                      ++.||+|++|+..+.+|+.+|+.   ...|.++...|.. ..++++...++|+|.++.......                
T Consensus       366 aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~l  445 (508)
T KOG0275|consen  366 ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAIL  445 (508)
T ss_pred             ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEe
Confidence            99999999999999999988875   3446676666644 357777778888887765421111                


Q ss_pred             -----------ecceeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          719 -----------KLQTLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       719 -----------~~~~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                 ....+.+|...++++. ++..|+..|..++-+|..+.||+-++||.+++|+
T Consensus       446 SpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  446 SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence                       1114555666666554 5668999999999999999999999999999996

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.93  E-value=4e-25  Score=219.29  Aligned_cols=199  Identities=20%  Similarity=0.407  Sum_probs=178.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe-eEEEeecCCCCeEEE
Q 004207          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSL  646 (768)
Q Consensus       568 ~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~-~~~~~~~h~~~V~sl  646 (768)
                      -+|++++.|.+|++|...+|.+..++.-..+.|+.+...|+++.||+++.- .||+||++++.. ++.++.+|...|++|
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE
Confidence            379999999999999999999999998778899999999999999988754 699999998775 789999999999999


Q ss_pred             EEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-----
Q 004207          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-----  721 (768)
Q Consensus       647 afsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-----  721 (768)
                      .|..+|+ .+++|++||+++|||+|...+-+.+.+..+|+++..+|+...|+++..+|.|++||+.+..+...+-     
T Consensus        90 gF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~  168 (311)
T KOG0315|consen   90 GFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT  168 (311)
T ss_pred             EEeecCe-EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence            9999987 5569999999999999999999999999999999999999999999999999999998875443321     


Q ss_pred             ---------------------eeEEeecCCCce-------EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 ---------------------TLELWNMTENKT-------LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 ---------------------~I~iwd~~~~~~-------~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                           ...+|++.....       ..+.+|.+.|..+.+||++++||++|.|.+|+||+
T Consensus       169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn  243 (311)
T KOG0315|consen  169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN  243 (311)
T ss_pred             ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe
Confidence                                 778898765432       25779999999999999999999999999999995

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=2.4e-24  Score=239.75  Aligned_cols=253  Identities=18%  Similarity=0.296  Sum_probs=211.9

Q ss_pred             CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 004207          493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT  572 (768)
Q Consensus       493 ~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaS  572 (768)
                      |...+.+..+.+.+.+|++|+.|+.|++|+...+                   .++.++..|+..|+.+.|+..|+.+++
T Consensus       349 H~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-------------------fC~vTFteHts~Vt~v~f~~~g~~lls  409 (893)
T KOG0291|consen  349 HSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-------------------FCFVTFTEHTSGVTAVQFTARGNVLLS  409 (893)
T ss_pred             cccceeeEEECCCCcEEEeccCCCcEEEEeccCc-------------------eEEEEeccCCCceEEEEEEecCCEEEE
Confidence            4555667778899999999999999999955332                   357888999999999999999999999


Q ss_pred             EeCCCcEEEEECCCCeEEEEeccCC-CCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCCeeEEEeecCCCCeEEEEEeC
Q 004207          573 GGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTVMSLDFHP  650 (768)
Q Consensus       573 gs~Dg~I~VWdl~t~~~~~tl~~h~-~~V~sl~fspdg~~LaTgs~Dg-tIrVWDl~t~~~~~~~~~~h~~~V~slafsp  650 (768)
                      ++-||+|+.||+...+..+++.... -...||+..|.|.+++.|+.|. .|.||++.+|+. +..+.||.++|.+++|+|
T Consensus       410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql-lDiLsGHEgPVs~l~f~~  488 (893)
T KOG0291|consen  410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL-LDILSGHEGPVSGLSFSP  488 (893)
T ss_pred             eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee-eehhcCCCCcceeeEEcc
Confidence            9999999999999999999887543 2467889999999999998887 799999999886 899999999999999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCC-CeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecC
Q 004207          651 SKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMT  729 (768)
Q Consensus       651 ~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~  729 (768)
                      .+. +|++++.|.+|++||+-. ...+.++.....+..++|.|+|..+++++.||.|.+||.........+...+  |+.
T Consensus       489 ~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idgrk--D~~  565 (893)
T KOG0291|consen  489 DGS-LLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRK--DLS  565 (893)
T ss_pred             ccC-eEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchh--hcc
Confidence            987 888999999999999864 3467778888999999999999999999999999999998876554333111  222


Q ss_pred             CCceE--E----eccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          730 ENKTL--T----LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       730 ~~~~~--~----l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .++..  .    -.+....++++++++||.+|++||....|+||+
T Consensus       566 ~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~  610 (893)
T KOG0291|consen  566 GGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD  610 (893)
T ss_pred             ccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence            22221  1    113346789999999999999999999999986

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.6e-25  Score=250.23  Aligned_cols=235  Identities=22%  Similarity=0.418  Sum_probs=204.2

Q ss_pred             CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK  578 (768)
Q Consensus       499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~  578 (768)
                      ...+++...+|.++-..|.|.+|++.-+                   ..+..|..|.++|..++|+|...+|++|+.|.+
T Consensus        14 glsFHP~rPwILtslHsG~IQlWDYRM~-------------------tli~rFdeHdGpVRgv~FH~~qplFVSGGDDyk   74 (1202)
T KOG0292|consen   14 GLSFHPKRPWILTSLHSGVIQLWDYRMG-------------------TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYK   74 (1202)
T ss_pred             ceecCCCCCEEEEeecCceeeeehhhhh-------------------hHHhhhhccCCccceeeecCCCCeEEecCCccE
Confidence            3456777889999999999999966443                   235667899999999999999999999999999


Q ss_pred             EEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207          579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (768)
Q Consensus       579 I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS  658 (768)
                      |+||+.++.+++.++.+|-+.|..+.|++...+++++|.|-|||||++.+.++ +..++||...|.|..|||..+ ++++
T Consensus        75 IkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~-iavltGHnHYVMcAqFhptED-lIVS  152 (1202)
T KOG0292|consen   75 IKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC-IAVLTGHNHYVMCAQFHPTED-LIVS  152 (1202)
T ss_pred             EEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce-EEEEecCceEEEeeccCCccc-eEEE
Confidence            99999999999999999999999999999999999999999999999998775 999999999999999999855 8889


Q ss_pred             EeCCCcEEEEECCC--------C-------------------ee--EEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207          659 CDNNSEIRYWSINN--------G-------------------SC--AGVFKC-QSGATQMRFQPRLGRILAAAIENYISI  708 (768)
Q Consensus       659 gs~Dg~I~iWDl~s--------g-------------------~~--i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~I  708 (768)
                      ++-|-+|+|||+..        +                   .+  .+++.+ ..+|..++|+|....|++|+.|..|++
T Consensus       153 aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKl  232 (1202)
T KOG0292|consen  153 ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL  232 (1202)
T ss_pred             ecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeE
Confidence            99999999999852        1                   01  122232 456899999999999999999999999


Q ss_pred             EECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          709 LDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       709 wD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |.+...         ..|.++     +..+|.+.|.++-|+|..++|+|.|+|++|+|||
T Consensus       233 Wrmnet---------KaWEvD-----tcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD  278 (1202)
T KOG0292|consen  233 WRMNET---------KAWEVD-----TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD  278 (1202)
T ss_pred             EEeccc---------cceeeh-----hhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence            988763         345543     4569999999999999999999999999999998

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.93  E-value=2.6e-24  Score=223.41  Aligned_cols=263  Identities=17%  Similarity=0.239  Sum_probs=220.3

Q ss_pred             CceEEEEecCCCCcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEE
Q 004207          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (768)
Q Consensus       481 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~s  560 (768)
                      +-++..|.......+   ...++++.+++++|+.|....+|....+.                   ....+.+|++.|+|
T Consensus        54 DdS~~tF~~H~~svF---avsl~P~~~l~aTGGgDD~AflW~~~~ge-------------------~~~eltgHKDSVt~  111 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVF---AVSLHPNNNLVATGGGDDLAFLWDISTGE-------------------FAGELTGHKDSVTC  111 (399)
T ss_pred             ccceeehhhcCCceE---EEEeCCCCceEEecCCCceEEEEEccCCc-------------------ceeEecCCCCceEE
Confidence            444555544433333   34455688999999999999999665442                   34567899999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCC
Q 004207          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS  640 (768)
Q Consensus       561 l~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~  640 (768)
                      +.|+.||.+||||+.+|.|+||...++.....+...-..|.-++|+|.+.+|+.|+.||.|.+|.+.+... .+.+.+|.
T Consensus       112 ~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~-~kv~~Gh~  190 (399)
T KOG0296|consen  112 CSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL-CKVMSGHN  190 (399)
T ss_pred             EEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce-eeEecCCC
Confidence            99999999999999999999999999999888875667788999999999999999999999999998644 78899999


Q ss_pred             CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEee
Q 004207          641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL  718 (768)
Q Consensus       641 ~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~  718 (768)
                      .++++=.|.|+|++++ ++..||+|++||..++.++..+..  +....++.++..+..++.|..++.+++....+++.+.
T Consensus       191 ~~ct~G~f~pdGKr~~-tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~  269 (399)
T KOG0296|consen  191 SPCTCGEFIPDGKRIL-TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN  269 (399)
T ss_pred             CCcccccccCCCceEE-EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence            9999999999988555 899999999999999999888874  4456778888887778888888877777766665443


Q ss_pred             ecc------------------------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 004207          719 KLQ------------------------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK  762 (768)
Q Consensus       719 ~~~------------------------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG  762 (768)
                      ...                                    +|.|||+...++.....|...|+.+.|-+ ..+|++++.||
T Consensus       270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g  348 (399)
T KOG0296|consen  270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANG  348 (399)
T ss_pred             ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCc
Confidence            221                                    89999999999888889999999999998 78999999999


Q ss_pred             cEEEeC
Q 004207          763 CVKIWK  768 (768)
Q Consensus       763 ~V~IWD  768 (768)
                      .|++||
T Consensus       349 ~v~~wD  354 (399)
T KOG0296|consen  349 KVRQWD  354 (399)
T ss_pred             eEEeee
Confidence            999997

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=1.9e-25  Score=226.95  Aligned_cols=268  Identities=15%  Similarity=0.245  Sum_probs=215.1

Q ss_pred             CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK  578 (768)
Q Consensus       499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~  578 (768)
                      ..++...+.++++||.|..|+++....-- .+.....+...+.....-.++++..|.++|+++.|+|....|++|+.|++
T Consensus       117 ~aafs~DG~lvATGsaD~SIKildverml-aks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~t  195 (430)
T KOG0640|consen  117 AAAFSPDGSLVATGSADASIKILDVERML-AKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNT  195 (430)
T ss_pred             eeeeCCCCcEEEccCCcceEEEeehhhhh-hhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCe
Confidence            44556678899999999999999654211 01111112222222223457889999999999999999999999999999


Q ss_pred             EEEEECCCCeEEEEec--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE--EeecCCCCeEEEEEeCCCCe
Q 004207          579 AVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR--TFTGHSTTVMSLDFHPSKED  654 (768)
Q Consensus       579 I~VWdl~t~~~~~tl~--~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~--~~~~h~~~V~slafsp~g~~  654 (768)
                      |++||...-...+.++  ....+|.+|.|+|.|.+|+.|..-.++++||+++-.+.+.  .-..|.+.|+++.+++.++ 
T Consensus       196 vKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-  274 (430)
T KOG0640|consen  196 VKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS-  274 (430)
T ss_pred             EEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCcc-
Confidence            9999987533332221  2356899999999999999999999999999998665332  2346899999999999977 


Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc----------
Q 004207          655 LLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ----------  721 (768)
Q Consensus       655 lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~----------  721 (768)
                      +.++++.||.|++||--+++|+.++..   ...|++..|..++.++++.+.|..|++|.+.++.++..+.          
T Consensus       275 lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~  354 (430)
T KOG0640|consen  275 LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKH  354 (430)
T ss_pred             EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhh
Confidence            777999999999999999999998864   4568999999999999999999999999999988766543          


Q ss_pred             ---------------------eeEEeecCCCceEE--eccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 ---------------------TLELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 ---------------------~I~iwd~~~~~~~~--l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                           .+..||.++...+.  ..+|.+.+..+.-+|.+.-|++||.|-.+++|-
T Consensus       355 rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  355 RTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             hhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence                                 67778887766553  348999999999999999999999999999993

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.93  E-value=5.3e-26  Score=243.13  Aligned_cols=221  Identities=20%  Similarity=0.361  Sum_probs=187.9

Q ss_pred             eEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 004207          546 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  623 (768)
Q Consensus       546 ~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t-~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrV  623 (768)
                      +.+..+.+|+..|+++.|.| .+.+|++++.|+.|+||++-. +++++++.+|..+|.+++|+.+|..|++++.|++|++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            45788899999999999999 888999999999999999876 8999999999999999999999999999999999999


Q ss_pred             EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEc
Q 004207          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI  702 (768)
Q Consensus       624 WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~  702 (768)
                      ||+++|.+ +..+. ....++|+.|+|++.++|++|+.|+.|+.||+|+++.+..+.. -+.|..+.|-+++.++++++.
T Consensus       285 wDtETG~~-~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD  362 (503)
T KOG0282|consen  285 WDTETGQV-LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD  362 (503)
T ss_pred             eccccceE-EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence            99999986 44444 2457899999999988999999999999999999998888765 467999999999999999999


Q ss_pred             CCeEEEEECCCceEeeecc--------------------------eeEEeecCC----CceEEeccCC--CCeeEEEEeC
Q 004207          703 ENYISILDVETQVCRLKLQ--------------------------TLELWNMTE----NKTLTLSAHD--KLVSSLAAST  750 (768)
Q Consensus       703 Dg~I~IwD~~t~~~~~~~~--------------------------~I~iwd~~~----~~~~~l~~H~--~~I~sla~sp  750 (768)
                      |+.|+||+.+....+....                          .+.++....    .+...+.+|.  +.-..|.|||
T Consensus       363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp  442 (503)
T KOG0282|consen  363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP  442 (503)
T ss_pred             CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence            9999999998764332221                          344444322    2222455664  4566789999


Q ss_pred             CCCEEEEEECCCcEEEeC
Q 004207          751 VNGMVASASHDKCVKIWK  768 (768)
Q Consensus       751 dg~~LaSgs~DG~V~IWD  768 (768)
                      ||.+|++|+.||.|.+||
T Consensus       443 DG~~l~SGdsdG~v~~wd  460 (503)
T KOG0282|consen  443 DGRTLCSGDSDGKVNFWD  460 (503)
T ss_pred             CCCeEEeecCCccEEEee
Confidence            999999999999999997

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1e-24  Score=214.78  Aligned_cols=248  Identities=18%  Similarity=0.285  Sum_probs=210.3

Q ss_pred             cccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 004207          496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH  575 (768)
Q Consensus       496 ~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~  575 (768)
                      ++....+...++|..+++.|.+|++|+...+                   ..++++.+|...|..++.+.|...|++|+.
T Consensus        19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg-------------------~liktYsghG~EVlD~~~s~Dnskf~s~Gg   79 (307)
T KOG0316|consen   19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-------------------ALIKTYSGHGHEVLDAALSSDNSKFASCGG   79 (307)
T ss_pred             ceEEEEEccCCCEEEEcCCCceEEeeccccc-------------------ceeeeecCCCceeeeccccccccccccCCC
Confidence            3445556778889999999999999954333                   357888999999999999999999999999


Q ss_pred             CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-eeEEEeecCCCCeEEEEEeCCCCe
Q 004207          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKED  654 (768)
Q Consensus       576 Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~-~~~~~~~~h~~~V~slafsp~g~~  654 (768)
                      |+.|.+||+.+++.++.+.+|.+.|+.|+|+.+...+++|+.|.+|++||.++.. .+++++......|.+|...   ++
T Consensus        80 Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~h  156 (307)
T KOG0316|consen   80 DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EH  156 (307)
T ss_pred             CceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---cc
Confidence            9999999999999999999999999999999999999999999999999998654 4577888788899999998   45


Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-------------
Q 004207          655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-------------  721 (768)
Q Consensus       655 lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-------------  721 (768)
                      .+++|+.||+++.||++.|...... ...+|++++|+++++..++++.|++|++.|-++++....+.             
T Consensus       157 eIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l  235 (307)
T KOG0316|consen  157 EIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCL  235 (307)
T ss_pred             EEEeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeee
Confidence            7889999999999999998875543 35889999999999999999999999999998876544332             


Q ss_pred             --------------eeEEeecCCCceE-EeccCCCC-eeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          722 --------------TLELWNMTENKTL-TLSAHDKL-VSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       722 --------------~I~iwd~~~~~~~-~l~~H~~~-I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                                    .+.+||+.....+ .+..|... |++++++|.-..|+++...+ +.+|
T Consensus       236 ~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~  296 (307)
T KOG0316|consen  236 NQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFW  296 (307)
T ss_pred             cccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eece
Confidence                          8999999888776 45566666 78999999887777776544 3344

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.93  E-value=1.1e-23  Score=255.85  Aligned_cols=235  Identities=21%  Similarity=0.270  Sum_probs=189.4

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl  584 (768)
                      ..+|++++.|++|++|+....                   ..+..+.+|.+.|++++|+| ++.+|++|+.|++|+|||+
T Consensus       545 ~~~las~~~Dg~v~lWd~~~~-------------------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~  605 (793)
T PLN00181        545 KSQVASSNFEGVVQVWDVARS-------------------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI  605 (793)
T ss_pred             CCEEEEEeCCCeEEEEECCCC-------------------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC
Confidence            567888888888888854321                   34566789999999999997 7899999999999999999


Q ss_pred             CCCeEEEEeccCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC
Q 004207          585 ESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (768)
Q Consensus       585 ~t~~~~~tl~~h~~~V~sl~fs-pdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg  663 (768)
                      .++..+..+..+ ..|.++.|+ +++.+|++|+.|++|++||+++....+..+.+|...|.++.|. ++. .|++++.|+
T Consensus       606 ~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~  682 (793)
T PLN00181        606 NQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDN  682 (793)
T ss_pred             CCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCC
Confidence            999988888755 579999995 4689999999999999999988765567788999999999997 444 677899999


Q ss_pred             cEEEEECCCC------eeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCc---e
Q 004207          664 EIRYWSINNG------SCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENK---T  733 (768)
Q Consensus       664 ~I~iWDl~sg------~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~---~  733 (768)
                      +|++||++.+      .++..+.. ...+..++|++++.+|++|+.|+.|++|+.........      |......   .
T Consensus       683 ~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s------~~~~~~~~~~~  756 (793)
T PLN00181        683 TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLS------YKFKTIDPVSG  756 (793)
T ss_pred             EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEE------EecccCCcccc
Confidence            9999999743      45666665 34578899999999999999999999999876533211      1111111   1


Q ss_pred             EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          734 LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       734 ~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .....|...|.+++|++++.+|++|+.||.|+|||
T Consensus       757 ~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~  791 (793)
T PLN00181        757 LEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE  791 (793)
T ss_pred             cccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence            12345677899999999999999999999999996

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.7e-25  Score=219.41  Aligned_cols=232  Identities=21%  Similarity=0.328  Sum_probs=194.4

Q ss_pred             cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEE
Q 004207          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVL  581 (768)
Q Consensus       503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~V  581 (768)
                      ..+++.+++++-||++++|.....                  -.++..++.|...|.+|.|++ ++..+++++.|++|++
T Consensus        70 e~~e~~~~~a~GDGSLrl~d~~~~------------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKL  131 (311)
T KOG0277|consen   70 ENHENQVIAASGDGSLRLFDLTMP------------------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKL  131 (311)
T ss_pred             CCCcceEEEEecCceEEEeccCCC------------------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEe
Confidence            457888999999999999953222                  236788899999999999999 5667888999999999


Q ss_pred             EECCCCeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe
Q 004207          582 WCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (768)
Q Consensus       582 Wdl~t~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs  660 (768)
                      |+....+.+.++.+|...|+...|+|. .++|+++|.|+++++||++.....+. +..|...|.|+.|+.-..++++||+
T Consensus       132 W~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~  210 (311)
T KOG0277|consen  132 WDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGG  210 (311)
T ss_pred             ecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecC
Confidence            999999999999999999999999994 78999999999999999998765344 8889999999999998899999999


Q ss_pred             CCCcEEEEECCCC-eeEEEEecC-CCeeEEEEecCCCE-EEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEec
Q 004207          661 NNSEIRYWSINNG-SCAGVFKCQ-SGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLS  737 (768)
Q Consensus       661 ~Dg~I~iWDl~sg-~~i~~~~~~-~~i~sl~fsp~~~~-llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~  737 (768)
                      .|+.|++||+++- ..+.++..+ -.|..+.|+|...- |++++.|-+++|||.......               ..+..
T Consensus       211 vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~---------------~e~~~  275 (311)
T KOG0277|consen  211 VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA---------------IETVD  275 (311)
T ss_pred             CCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh---------------hhhhh
Confidence            9999999999974 345566543 34899999997554 667888999999998754321               11233


Q ss_pred             cCCCCeeEEEEeCC-CCEEEEEECCCcEEEeC
Q 004207          738 AHDKLVSSLAASTV-NGMVASASHDKCVKIWK  768 (768)
Q Consensus       738 ~H~~~I~sla~spd-g~~LaSgs~DG~V~IWD  768 (768)
                      .|.+-|..+.|++- ..++|+++.|+.++||+
T Consensus       276 ~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  276 HHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             ccceEEeccccccccCceeeecccccceeeec
Confidence            68888999999874 57999999999999996

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=8.4e-24  Score=241.26  Aligned_cols=203  Identities=18%  Similarity=0.283  Sum_probs=167.7

Q ss_pred             EecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEeccCCCCEEEEEEcCCC-CEEEEEeCCCc
Q 004207          550 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADRT  620 (768)
Q Consensus       550 ~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~-------~~~~tl~~h~~~V~sl~fspdg-~~LaTgs~Dgt  620 (768)
                      .+.+|.+.|++++|+| ++.+|++|+.|++|+|||+.+.       +.+..+.+|...|.+|+|+|++ .+|++++.|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            4679999999999999 8899999999999999999764       3567889999999999999975 69999999999


Q ss_pred             EEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC--eeEEEEecCCCEEE
Q 004207          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRIL  698 (768)
Q Consensus       621 IrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~--i~sl~fsp~~~~ll  698 (768)
                      |+|||++++.. +..+.+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+..+..  +..+.|.+++..++
T Consensus       150 VrIWDl~tg~~-~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv  227 (493)
T PTZ00421        150 VNVWDVERGKA-VEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII  227 (493)
T ss_pred             EEEEECCCCeE-EEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence            99999998764 777888999999999999976 677999999999999999998888776543  45678999888888


Q ss_pred             EEE----cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 004207          699 AAA----IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK  768 (768)
Q Consensus       699 ags----~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~IWD  768 (768)
                      +++    .|+.|++||+++.....     ...+         ..+...+....|++++.+|++++ .||.|++||
T Consensus       228 t~G~s~s~Dr~VklWDlr~~~~p~-----~~~~---------~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwd  288 (493)
T PTZ00421        228 TLGCSKSQQRQIMLWDTRKMASPY-----STVD---------LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFE  288 (493)
T ss_pred             EEecCCCCCCeEEEEeCCCCCCce-----eEec---------cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEE
Confidence            765    37889999987643211     1111         12334566678999999999888 599999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.93  E-value=1e-23  Score=217.68  Aligned_cols=218  Identities=32%  Similarity=0.550  Sum_probs=187.8

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t  628 (768)
                      ..+.+|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+.++.|++++++|++++.||.|++||+.+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            45678999999999999999999999999999999999888888889999999999999999999999999999999997


Q ss_pred             CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEE
Q 004207          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYIS  707 (768)
Q Consensus       629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~  707 (768)
                      ++. +..+..|...|.++.|++++. ++++++.|+.|++||+++++.+..+.. ...+.+++|+|++.++++++.|+.|+
T Consensus        83 ~~~-~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~  160 (289)
T cd00200          83 GEC-VRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK  160 (289)
T ss_pred             ccc-eEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence            654 667778888999999999854 777777899999999998888887773 55799999999977777777799999


Q ss_pred             EEECCCceEeeecc-------------------------eeEEeecCCCceEEe-ccCCCCeeEEEEeCCCCEEEEEECC
Q 004207          708 ILDVETQVCRLKLQ-------------------------TLELWNMTENKTLTL-SAHDKLVSSLAASTVNGMVASASHD  761 (768)
Q Consensus       708 IwD~~t~~~~~~~~-------------------------~I~iwd~~~~~~~~l-~~H~~~I~sla~spdg~~LaSgs~D  761 (768)
                      +||+++......+.                         .+.+||+..+..... ..|...|.+++|++++.++++++.|
T Consensus       161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  240 (289)
T cd00200         161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED  240 (289)
T ss_pred             EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC
Confidence            99997654322221                         788999887666644 4888899999999998888888889


Q ss_pred             CcEEEeC
Q 004207          762 KCVKIWK  768 (768)
Q Consensus       762 G~V~IWD  768 (768)
                      |.|++||
T Consensus       241 ~~i~i~~  247 (289)
T cd00200         241 GTIRVWD  247 (289)
T ss_pred             CcEEEEE
Confidence            9999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.93  E-value=8.7e-26  Score=232.15  Aligned_cols=260  Identities=23%  Similarity=0.370  Sum_probs=213.3

Q ss_pred             CCccccCCCCCceEEEEecCCCC------cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCce
Q 004207          471 RPTLQHNGASSKSLLMFGSDGMG------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT  544 (768)
Q Consensus       471 ~~~l~~s~s~~~~~l~~~~~~~~------~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~  544 (768)
                      ....+.+|.++.++-+|......      ++.-+...+.-.++++++||.|.+|++|+...+                  
T Consensus       206 DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tg------------------  267 (499)
T KOG0281|consen  206 DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTG------------------  267 (499)
T ss_pred             cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCC------------------
Confidence            34567889999999999987652      333345556667889999999999999966544                  


Q ss_pred             eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 004207          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTV  621 (768)
Q Consensus       545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~---~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtI  621 (768)
                       +.++++-+|...|..+.|+  ..++++++.|.+|.|||+....   +...+.+|...|+.+.|+  .+++++++.|.+|
T Consensus       268 -e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTi  342 (499)
T KOG0281|consen  268 -EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI  342 (499)
T ss_pred             -chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceE
Confidence             3466778999999999995  6799999999999999987654   335678999999999997  4699999999999


Q ss_pred             EEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC-CeeEEEEecCCCEEEEE
Q 004207          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAA  700 (768)
Q Consensus       622 rVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~-~i~sl~fsp~~~~llag  700 (768)
                      ++|++.+.++ ++++.+|...|.|+.+.   ..++++|+.|.+|++||+..|.|++.+.++. -|.++.|..  ..+++|
T Consensus       343 kvW~~st~ef-vRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--krIVSG  416 (499)
T KOG0281|consen  343 KVWSTSTCEF-VRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSG  416 (499)
T ss_pred             EEEeccceee-ehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ceeeec
Confidence            9999999886 99999999999999886   5588999999999999999999999998754 488999975  489999


Q ss_pred             EcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          701 AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +.||+|+|||+.+..-.....       .+-.+.++..|.+.|..+.|.  ...|++++.|.+|.|||
T Consensus       417 aYDGkikvWdl~aaldpra~~-------~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd  475 (499)
T KOG0281|consen  417 AYDGKIKVWDLQAALDPRAPA-------STLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD  475 (499)
T ss_pred             cccceEEEEecccccCCcccc-------cchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence            999999999998754321110       011122556899999999997  66899999999999997

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.93  E-value=1.2e-23  Score=255.72  Aligned_cols=249  Identities=14%  Similarity=0.255  Sum_probs=195.4

Q ss_pred             cccccCccccCCCCEEEeecCCCcEEEeecCCCC-CCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEE
Q 004207          494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA-DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLA  571 (768)
Q Consensus       494 ~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~La  571 (768)
                      ...+....+++.+.++++|+.|+.|++|...... +..           ... ..+..+. +...|.+++|++ ++.+|+
T Consensus       483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-----------~~~-~~~~~~~-~~~~v~~l~~~~~~~~~la  549 (793)
T PLN00181        483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-----------DIH-YPVVELA-SRSKLSGICWNSYIKSQVA  549 (793)
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-----------ccc-cceEEec-ccCceeeEEeccCCCCEEE
Confidence            3344556677788999999999999999653210 000           000 0112222 346799999987 578999


Q ss_pred             EEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeC
Q 004207          572 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP  650 (768)
Q Consensus       572 Sgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp  650 (768)
                      +++.||+|+|||+.+++.+..+.+|...|++++|+| ++.+|++|+.|++|++||++++.. +..+..+ ..|.++.|++
T Consensus       550 s~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~~-~~v~~v~~~~  627 (793)
T PLN00181        550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKTK-ANICCVQFPS  627 (793)
T ss_pred             EEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEecC-CCeEEEEEeC
Confidence            999999999999999999999999999999999997 788999999999999999998764 5566544 6799999976


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCe-eEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeec
Q 004207          651 SKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNM  728 (768)
Q Consensus       651 ~g~~lLaSgs~Dg~I~iWDl~sg~-~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~  728 (768)
                      ....+|++|+.|+.|++||+++.. .+..+.. ...|.++.|. ++.++++++.|+.|++||+.......          
T Consensus       628 ~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~----------  696 (793)
T PLN00181        628 ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGI----------  696 (793)
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcccc----------
Confidence            655688899999999999998765 3445543 4579999997 56889999999999999987532110          


Q ss_pred             CCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          729 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       729 ~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ....+..+.+|...|.+++|++++.+|++|+.||.|+||+
T Consensus       697 ~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~  736 (793)
T PLN00181        697 NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH  736 (793)
T ss_pred             CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence            1112335678999999999999999999999999999996

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.93  E-value=1.7e-24  Score=225.56  Aligned_cols=229  Identities=21%  Similarity=0.329  Sum_probs=194.0

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC---EEEEEeCCCcEEE
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK---LLATGGHDKKAVL  581 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~---~LaSgs~Dg~I~V  581 (768)
                      ...+|.+|++||.+++|...                 |   +....+.+|.++|.+++|.-...   .|++++.|.++++
T Consensus       114 ~~~~IltgsYDg~~riWd~~-----------------G---k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L  173 (423)
T KOG0313|consen  114 ASKWILTGSYDGTSRIWDLK-----------------G---KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL  173 (423)
T ss_pred             cCceEEEeecCCeeEEEecC-----------------C---ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEE
Confidence            38899999999999999432                 2   35677889999999888865333   5999999999999


Q ss_pred             EECCCCeEE----EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------------------------CeeE
Q 004207          582 WCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP------------------------DYSL  633 (768)
Q Consensus       582 Wdl~t~~~~----~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~------------------------~~~~  633 (768)
                      |-.+.++..    ....+|...|-+|...+++..+++|+.|.+|.||+.++.                        +.++
T Consensus       174 w~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~  253 (423)
T KOG0313|consen  174 WKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL  253 (423)
T ss_pred             EEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence            988766533    334599999999999999999999999999999993210                        1245


Q ss_pred             EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       634 ~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                      .++.+|..+|.+|.|++.  ..+++++.|.+|+.||+.++.++..+.+...+.++.++|....|++|+.|..|++||.++
T Consensus       254 vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~  331 (423)
T KOG0313|consen  254 VTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT  331 (423)
T ss_pred             EEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCC
Confidence            678899999999999983  467899999999999999999999999999999999999999999999999999999988


Q ss_pred             ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 004207          714 QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK  768 (768)
Q Consensus       714 ~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IWD  768 (768)
                      +....             ....+.+|.+.|.+|.|+|.. ..|++|+.|+++++||
T Consensus       332 ~~gs~-------------v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWD  374 (423)
T KOG0313|consen  332 GDGSV-------------VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWD  374 (423)
T ss_pred             CCCce-------------eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence            63211             123677999999999999987 4788999999999998

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.92  E-value=5.6e-24  Score=213.06  Aligned_cols=250  Identities=16%  Similarity=0.175  Sum_probs=202.9

Q ss_pred             ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 004207          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD  576 (768)
Q Consensus       497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D  576 (768)
                      +..+.+.-.+.+|.+++.|.++.+|.+..+                   ..+-++.+|++.|+||..+-+.+++++|+.|
T Consensus        13 lTqiKyN~eGDLlFscaKD~~~~vw~s~nG-------------------erlGty~GHtGavW~~Did~~s~~liTGSAD   73 (327)
T KOG0643|consen   13 LTQIKYNREGDLLFSCAKDSTPTVWYSLNG-------------------ERLGTYDGHTGAVWCCDIDWDSKHLITGSAD   73 (327)
T ss_pred             cceEEecCCCcEEEEecCCCCceEEEecCC-------------------ceeeeecCCCceEEEEEecCCcceeeecccc
Confidence            334445556789999999999999976554                   2467788999999999999999999999999


Q ss_pred             CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCC------CeeEEEeecCCCCeEE
Q 004207          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENP------DYSLRTFTGHSTTVMS  645 (768)
Q Consensus       577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~-----DgtIrVWDl~t~------~~~~~~~~~h~~~V~s  645 (768)
                      .++++||+++|+++.+++. ..+|..+.|++++++++.+..     .+.|.++|++..      +.++..+..+.+.++.
T Consensus        74 ~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~  152 (327)
T KOG0643|consen   74 QTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITS  152 (327)
T ss_pred             ceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceee
Confidence            9999999999999999974 568999999999998877654     368999999832      2345666778899999


Q ss_pred             EEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE-EEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc--
Q 004207          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--  721 (768)
Q Consensus       646 lafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~-~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~--  721 (768)
                      +-|.|-++ .|++|.+||.|.+||++++.... ... +...|+.+.++++..++++++.|.+-++||+.+..+...+.  
T Consensus       153 a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te  231 (327)
T KOG0643|consen  153 ALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE  231 (327)
T ss_pred             eeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence            99999987 45599999999999999985443 322 45679999999999999999999999999999987766554  


Q ss_pred             ------------------------------------eeEEeecC-CCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 004207          722 ------------------------------------TLELWNMT-ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCV  764 (768)
Q Consensus       722 ------------------------------------~I~iwd~~-~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V  764 (768)
                                                          ..++|++- ..++-.+.+|-++|++|+|+|+|+..++|++||.|
T Consensus       232 ~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~V  311 (327)
T KOG0643|consen  232 RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYV  311 (327)
T ss_pred             ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceE
Confidence                                                11111111 11122567899999999999999999999999999


Q ss_pred             EEe
Q 004207          765 KIW  767 (768)
Q Consensus       765 ~IW  767 (768)
                      +|.
T Consensus       312 R~h  314 (327)
T KOG0643|consen  312 RLH  314 (327)
T ss_pred             EEE
Confidence            984

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=5.5e-24  Score=232.60  Aligned_cols=236  Identities=22%  Similarity=0.338  Sum_probs=196.8

Q ss_pred             cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 004207          494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATG  573 (768)
Q Consensus       494 ~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSg  573 (768)
                      ...+....+-...+++++||.|..|++|+...                   ...++.|.+|.+.|.||+.+|.-.+++|+
T Consensus        55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt-------------------~ekV~~FeAH~DyIR~iavHPt~P~vLts  115 (794)
T KOG0276|consen   55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT-------------------GEKVKTFEAHSDYIRSIAVHPTLPYVLTS  115 (794)
T ss_pred             ccchhhheeeeccceEEEecCCceEEEEeccc-------------------ceeeEEeeccccceeeeeecCCCCeEEec
Confidence            34455666777889999999999999996543                   35688899999999999999999999999


Q ss_pred             eCCCcEEEEECCC-CeEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCC
Q 004207          574 GHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS  651 (768)
Q Consensus       574 s~Dg~I~VWdl~t-~~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~  651 (768)
                      +.|.+|++||.+. ..+..++++|+..|-+|+|+| |.+.|+++|-|+||+||.+..... ..++.+|...|.||++-+.
T Consensus       116 SDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~-nfTl~gHekGVN~Vdyy~~  194 (794)
T KOG0276|consen  116 SDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP-NFTLEGHEKGVNCVDYYTG  194 (794)
T ss_pred             CCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC-ceeeeccccCcceEEeccC
Confidence            9999999999875 568889999999999999999 578999999999999999998664 7889999999999999875


Q ss_pred             C-CeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecC
Q 004207          652 K-EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMT  729 (768)
Q Consensus       652 g-~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~  729 (768)
                      | +-.+++|++|.+|+|||..+..|+.++++ ...|..++|+|.-..+++|+.||+|+||+..+.+....+.        
T Consensus       195 gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn--------  266 (794)
T KOG0276|consen  195 GDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN--------  266 (794)
T ss_pred             CCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh--------
Confidence            5 34677999999999999999999999996 4569999999999999999999999999988865543321        


Q ss_pred             CCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 004207          730 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVK  765 (768)
Q Consensus       730 ~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~  765 (768)
                              -.-+.|+|++-.+.++.+++|.++|.|.
T Consensus       267 --------~gleRvW~I~~~k~~~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  267 --------YGLERVWCIAAHKGDGKIAVGFDEGSVT  294 (794)
T ss_pred             --------cCCceEEEEeecCCCCeEEEeccCCcEE
Confidence                    1223456666555555666666665554

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.5e-23  Score=214.35  Aligned_cols=248  Identities=20%  Similarity=0.322  Sum_probs=201.7

Q ss_pred             EEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004207          509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT  588 (768)
Q Consensus       509 latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~  588 (768)
                      +++|++...|..|......+..       ......++.++..+.+|.++|+|+++  ++.|+|+|+.|-+|+|||+.+..
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~-------~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~   74 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGC-------TDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK   74 (362)
T ss_pred             EEEeeeeeEEEEEEeccCcccc-------ccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh
Confidence            5678888888877543332111       11223556677888999999999999  69999999999999999999999


Q ss_pred             EEEEeccCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 004207          589 VKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (768)
Q Consensus       589 ~~~tl~~h~~~V~sl~fspdg~--~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~  666 (768)
                      .+..+..|.+.|+++.|.+.-.  .|++|+.||.|.+|+...- ..+.++.+|.+.|+.|++||.++ +.++.+.|+.++
T Consensus        75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr  152 (362)
T KOG0294|consen   75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLR  152 (362)
T ss_pred             hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCc-eEEEEcCCceee
Confidence            9999999999999999998754  8999999999999999876 45899999999999999999987 555777799999


Q ss_pred             EEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee-----------------------ccee
Q 004207          667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK-----------------------LQTL  723 (768)
Q Consensus       667 iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~-----------------------~~~I  723 (768)
                      +||+-.|+.-.........+.+.|+|.|.+++.+..+ .|-||.+.+......                       ...+
T Consensus       153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i  231 (362)
T KOG0294|consen  153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWI  231 (362)
T ss_pred             eehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceE
Confidence            9999999888777777777779999999988777664 477887765321111                       1178


Q ss_pred             EEeecCCCceE-EeccCCCCeeEEEE--eCCCCEEEEEECCCcEEEeC
Q 004207          724 ELWNMTENKTL-TLSAHDKLVSSLAA--STVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       724 ~iwd~~~~~~~-~l~~H~~~I~sla~--spdg~~LaSgs~DG~V~IWD  768 (768)
                      .+||.....+. .+.+|...|.++.+  .|++.||+|+|.||.|+|||
T Consensus       232 ~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd  279 (362)
T KOG0294|consen  232 SLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD  279 (362)
T ss_pred             EEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence            88998865554 67799999999984  36678999999999999997

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=1.4e-22  Score=232.71  Aligned_cols=206  Identities=16%  Similarity=0.227  Sum_probs=159.9

Q ss_pred             EEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe--------EEEEeccCCCCEEEEEEcCCCCE-EEEEe
Q 004207          547 EFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSR-LATSS  616 (768)
Q Consensus       547 ~~~~l~~H~~~I~sl~fSpd-g~~LaSgs~Dg~I~VWdl~t~~--------~~~tl~~h~~~V~sl~fspdg~~-LaTgs  616 (768)
                      .+..+.+|.+.|.+|+|+|+ +.+||+|+.|++|+|||+.++.        ++..+.+|...|.+|+|+|++.. |++++
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence            56778899999999999996 7899999999999999997542        34567889999999999998775 57899


Q ss_pred             CCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC-eeE-----EEE
Q 004207          617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQ-----MRF  690 (768)
Q Consensus       617 ~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~-i~s-----l~f  690 (768)
                      .|++|+|||++++.. +..+. |...|.+++|+++|. +|++++.|+.|+|||+++++++..+..+.. +..     ..|
T Consensus       146 ~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~f  222 (568)
T PTZ00420        146 FDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGL  222 (568)
T ss_pred             CCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeE
Confidence            999999999998775 44444 567899999999987 566777899999999999999888876543 222     234


Q ss_pred             ecCCCEEEEEEcCC----eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207          691 QPRLGRILAAAIEN----YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  766 (768)
Q Consensus       691 sp~~~~llags~Dg----~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~I  766 (768)
                      ++++.+|++++.|+    .|+|||++.....     +..        ..+..+.+.+......+++.++++|+.|+.|++
T Consensus       223 s~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p-----l~~--------~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~  289 (568)
T PTZ00420        223 GGDDNYILSTGFSKNNMREMKLWDLKNTTSA-----LVT--------MSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY  289 (568)
T ss_pred             cCCCCEEEEEEcCCCCccEEEEEECCCCCCc-----eEE--------EEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence            58888999988774    6999998853211     111        122233344444444556889999999999999


Q ss_pred             eC
Q 004207          767 WK  768 (768)
Q Consensus       767 WD  768 (768)
                      |+
T Consensus       290 ~e  291 (568)
T PTZ00420        290 YQ  291 (568)
T ss_pred             EE
Confidence            96

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=5.9e-24  Score=209.42  Aligned_cols=219  Identities=21%  Similarity=0.361  Sum_probs=189.9

Q ss_pred             eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      +....+..|.++|.++.|+-||+|.++|+.|.+|++|+...+.+++++.+|...|.+++.+.|...|++|+.|+.|.+||
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            34677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC--CeeEEEEec-CCCeeEEEEecCCCEEEEEEc
Q 004207          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFKC-QSGATQMRFQPRLGRILAAAI  702 (768)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s--g~~i~~~~~-~~~i~sl~fsp~~~~llags~  702 (768)
                      +++++. ++.+.+|.+.|..+.|+.+.. ++++|+.|.+|++||.++  .+++.++.. ...|.++....  ..|++|+.
T Consensus        88 V~TGkv-~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--heIvaGS~  163 (307)
T KOG0316|consen   88 VNTGKV-DRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEIVAGSV  163 (307)
T ss_pred             cccCee-eeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--cEEEeecc
Confidence            999886 899999999999999998854 888999999999999986  456666653 56788888775  47999999


Q ss_pred             CCeEEEEECCCceEeeecc-----------------------eeEEeecCCCceE-EeccCCCCee--EEEEeCCCCEEE
Q 004207          703 ENYISILDVETQVCRLKLQ-----------------------TLELWNMTENKTL-TLSAHDKLVS--SLAASTVNGMVA  756 (768)
Q Consensus       703 Dg~I~IwD~~t~~~~~~~~-----------------------~I~iwd~~~~~~~-~l~~H~~~I~--sla~spdg~~La  756 (768)
                      ||+++.||++.+......-                       ++++.|..+++++ .+.+|.+.-.  .++++....+++
T Consensus       164 DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~  243 (307)
T KOG0316|consen  164 DGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVF  243 (307)
T ss_pred             CCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEE
Confidence            9999999999875443221                       7888898888877 5668876544  456666678999


Q ss_pred             EEECCCcEEEeC
Q 004207          757 SASHDKCVKIWK  768 (768)
Q Consensus       757 Sgs~DG~V~IWD  768 (768)
                      +||+||.|++||
T Consensus       244 sgSEDG~Vy~wd  255 (307)
T KOG0316|consen  244 SGSEDGKVYFWD  255 (307)
T ss_pred             eccCCceEEEEE
Confidence            999999999997

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.7e-23  Score=231.99  Aligned_cols=237  Identities=20%  Similarity=0.331  Sum_probs=204.5

Q ss_pred             cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecC-CCCCeEEEEEcCCCCEEEE
Q 004207          494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFSPDGKLLAT  572 (768)
Q Consensus       494 ~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~-H~~~I~sl~fSpdg~~LaS  572 (768)
                      ...+.++.....+.+|++|..+|.|.+|+....                   +.+..+.+ |...|-|++|+  +..+.+
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~-------------------k~~~~~~~~h~~rvg~laW~--~~~lss  275 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ-------------------KKTRTLRGSHASRVGSLAWN--SSVLSS  275 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhc-------------------cccccccCCcCceeEEEecc--CceEEE
Confidence            345567777889999999999999999955333                   23444556 99999999997  778999


Q ss_pred             EeCCCcEEEEECCCCeEEEE-eccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCC
Q 004207          573 GGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS  651 (768)
Q Consensus       573 gs~Dg~I~VWdl~t~~~~~t-l~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~  651 (768)
                      |+.|+.|.++|+...+.... +.+|...|+.+.|++|+.+||+|+.|+.|.|||..... .+..+..|.+.|.+++|+|-
T Consensus       276 Gsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~awcP~  354 (484)
T KOG0305|consen  276 GSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALAWCPW  354 (484)
T ss_pred             ecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEEeccceeeeEeeeCCC
Confidence            99999999999988765544 88999999999999999999999999999999996555 47788889999999999999


Q ss_pred             CCeEEEEEe--CCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE--cCCeEEEEECCCceEeeecceeEEee
Q 004207          652 KEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKLQTLELWN  727 (768)
Q Consensus       652 g~~lLaSgs--~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags--~Dg~I~IwD~~t~~~~~~~~~I~iwd  727 (768)
                      ...+||+|+  .|+.|++||+.++..+..+.....|+.+.|++..+.|+++.  .++.|.||+..+...           
T Consensus       355 q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~-----------  423 (484)
T KOG0305|consen  355 QSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL-----------  423 (484)
T ss_pred             ccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce-----------
Confidence            888999875  69999999999999999999999999999999988877754  567788888776433           


Q ss_pred             cCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          728 MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       728 ~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                           ...+.+|...|..++++|||..|++|+.|.++++|+
T Consensus       424 -----~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~  459 (484)
T KOG0305|consen  424 -----VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN  459 (484)
T ss_pred             -----eeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence                 235669999999999999999999999999999996

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.91  E-value=4.9e-23  Score=214.80  Aligned_cols=262  Identities=19%  Similarity=0.313  Sum_probs=203.9

Q ss_pred             CccccCCCCCceEEEEecCCCCcccc----------cCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCC
Q 004207          472 PTLQHNGASSKSLLMFGSDGMGSLTS----------APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK  541 (768)
Q Consensus       472 ~~l~~s~s~~~~~l~~~~~~~~~~~~----------~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~  541 (768)
                      ...+++++.+....+|...+...+.+          .....+.....+++++.|.++++|....+...            
T Consensus       115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~------------  182 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK------------  182 (423)
T ss_pred             CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh------------
Confidence            35778889999999999887632211          12223444456899999999999965444211            


Q ss_pred             CceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-------------------------CCeEEEEeccC
Q 004207          542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-------------------------SFTVKSTLEEH  596 (768)
Q Consensus       542 ~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~-------------------------t~~~~~tl~~h  596 (768)
                         .+.++.-.+|.+.|.|++..++|..+++|+.|..|+||+..                         +..++.++.+|
T Consensus       183 ---~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH  259 (423)
T KOG0313|consen  183 ---VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH  259 (423)
T ss_pred             ---hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence               11122234999999999999999999999999999999832                         12356678999


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe--
Q 004207          597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--  674 (768)
Q Consensus       597 ~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~--  674 (768)
                      ..+|.+|.|++ ...+++++.|.+|++||++++.. +..+.+ ...+.|++.+|. ..+|++|+.|..|++||.|++.  
T Consensus       260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~-~~~~~~-~ksl~~i~~~~~-~~Ll~~gssdr~irl~DPR~~~gs  335 (423)
T KOG0313|consen  260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL-KSTLTT-NKSLNCISYSPL-SKLLASGSSDRHIRLWDPRTGDGS  335 (423)
T ss_pred             ccceeeEEEcC-CCceEeecccceEEEEEeecccc-eeeeec-CcceeEeecccc-cceeeecCCCCceeecCCCCCCCc
Confidence            99999999998 67899999999999999999886 444443 467999999997 4588899999999999998753  


Q ss_pred             e-EEEEec-CCCeeEEEEecCCCE-EEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC
Q 004207          675 C-AGVFKC-QSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV  751 (768)
Q Consensus       675 ~-i~~~~~-~~~i~sl~fsp~~~~-llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd  751 (768)
                      . ...+.+ ..-|.++.|+|...+ |++++.|+++++||+++..               ..+..+.+|.+.|.++.|+. 
T Consensus       336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k---------------~plydI~~h~DKvl~vdW~~-  399 (423)
T KOG0313|consen  336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK---------------APLYDIAGHNDKVLSVDWNE-  399 (423)
T ss_pred             eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC---------------CcceeeccCCceEEEEeccC-
Confidence            2 234443 445889999998777 6778899999999998843               22445668999999999984 


Q ss_pred             CCEEEEEECCCcEEEeC
Q 004207          752 NGMVASASHDKCVKIWK  768 (768)
Q Consensus       752 g~~LaSgs~DG~V~IWD  768 (768)
                      +.+|++||.|.+|+|++
T Consensus       400 ~~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  400 GGLIVSGGADNKLRIFK  416 (423)
T ss_pred             CceEEeccCcceEEEec
Confidence            67999999999999974

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.91  E-value=8e-23  Score=233.94  Aligned_cols=236  Identities=26%  Similarity=0.442  Sum_probs=204.9

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEE-ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWd  583 (768)
                      ++.++.+|+.|.++++|.....                   ..+.. +.+|.+.|.+++|...+.+|++|+.|.+++|||
T Consensus       217 ~~~~~~~~s~~~tl~~~~~~~~-------------------~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd  277 (537)
T KOG0274|consen  217 HDGFFKSGSDDSTLHLWDLNNG-------------------YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD  277 (537)
T ss_pred             ecCeEEecCCCceeEEeecccc-------------------eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence            3778999999999999944322                   33444 899999999999987788999999999999999


Q ss_pred             CCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC
Q 004207          584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (768)
Q Consensus       584 l~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg  663 (768)
                      +.++.+..++.+|.+.|.++...+  .++++|+.|.+|+||++.++.. +..+.+|.+.|.++..+   ..++++|+.|+
T Consensus       278 ~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V~~v~~~---~~~lvsgs~d~  351 (537)
T KOG0274|consen  278 CSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGAC-LNLLRGHTGPVNCVQLD---EPLLVSGSYDG  351 (537)
T ss_pred             cCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcce-EEEeccccccEEEEEec---CCEEEEEecCc
Confidence            999999999999999999998874  4788899999999999998775 88888899999999998   34788999999


Q ss_pred             cEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCc-eEeeecc--------------------
Q 004207          664 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQ--------------------  721 (768)
Q Consensus       664 ~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~-~~~~~~~--------------------  721 (768)
                      +|++||+.++++++++.+ ...|.++.+... .++++|+.|++|++||+++. .|+..+.                    
T Consensus       352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~  430 (537)
T KOG0274|consen  352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSS  430 (537)
T ss_pred             eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEecc
Confidence            999999999999999986 456888888775 78999999999999999998 6665554                    


Q ss_pred             ---eeEEeecCCCceE-Eecc-CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 ---TLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 ---~I~iwd~~~~~~~-~l~~-H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                         +|++||..++.++ ++.+ |...|+++++.  ...+++++.||.+++||
T Consensus       431 aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d  480 (537)
T KOG0274|consen  431 ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD  480 (537)
T ss_pred             ccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence               8999999998877 4445 56889888876  56899999999999997

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.91  E-value=2e-24  Score=226.67  Aligned_cols=195  Identities=17%  Similarity=0.420  Sum_probs=173.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~  634 (768)
                      ..+|..|.|.|+|+.|++|+..|.+.+|+..+......+..|..+|.++.|++++.++++|+.+|.|++|+..-..  +.
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--Vk  173 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--VK  173 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--hH
Confidence            4569999999999999999999999999987777667778999999999999999999999999999999987543  44


Q ss_pred             EeecC-CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004207          635 TFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE  712 (768)
Q Consensus       635 ~~~~h-~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~  712 (768)
                      .+.+| ...|++++|+|+. ..|++|++||+|+|||....+....+.+ +-.|.++.|+|..+.|++++.|+.|++||.+
T Consensus       174 ~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr  252 (464)
T KOG0284|consen  174 IIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR  252 (464)
T ss_pred             HhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence            44444 4899999999974 4778999999999999998888777776 4569999999999999999999999999999


Q ss_pred             CceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          713 TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       713 t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ++.|+..                +.+|+..|..+.|++++++|+|+|.|..+++||
T Consensus       253 Sg~cl~t----------------lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~D  292 (464)
T KOG0284|consen  253 SGSCLAT----------------LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFD  292 (464)
T ss_pred             Ccchhhh----------------hhhccceEEEEEEcCCCCeeEEccCCceEEEEe
Confidence            9887654                448999999999999999999999999999997

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.91  E-value=5.1e-23  Score=229.22  Aligned_cols=251  Identities=24%  Similarity=0.370  Sum_probs=207.4

Q ss_pred             CCceEEEEecCCCC------cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecC
Q 004207          480 SSKSLLMFGSDGMG------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (768)
Q Consensus       480 ~~~~~l~~~~~~~~------~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~  553 (768)
                      ...++..|..+...      |--.....+.+.+++|+.|...|.+.+|.....                   ..+.++++
T Consensus       392 a~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-------------------~l~Eti~A  452 (888)
T KOG0306|consen  392 AGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASA-------------------SLVETIRA  452 (888)
T ss_pred             CCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehh-------------------hhhhhhhc
Confidence            34566777777542      223335567788889999998888888843222                   22455679


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-----CeE---E-----EEeccCCCCEEEEEEcCCCCEEEEEeCCCc
Q 004207          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FTV---K-----STLEEHTQWITDVRFSPSLSRLATSSADRT  620 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t-----~~~---~-----~tl~~h~~~V~sl~fspdg~~LaTgs~Dgt  620 (768)
                      |.+.|.+++.+||++.+++|+.|.+|++||.+-     +..   +     .+++ -...|.|+.+|||+++|+++--|.+
T Consensus       453 HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnT  531 (888)
T KOG0306|consen  453 HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNT  531 (888)
T ss_pred             cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCe
Confidence            999999999999999999999999999998642     111   1     2222 3567999999999999999999999


Q ss_pred             EEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEE
Q 004207          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA  699 (768)
Q Consensus       621 IrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~lla  699 (768)
                      |+||=+++-+. ...+-||.-+|.|++.+|++. +++||+.|.+|++|-+.-|.|-+.+.. ...|.++.|.|....+++
T Consensus       532 VkVyflDtlKF-flsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt  609 (888)
T KOG0306|consen  532 VKVYFLDTLKF-FLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFT  609 (888)
T ss_pred             EEEEEecceee-eeeecccccceeEEeccCCcC-eEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEE
Confidence            99999998776 667788999999999999976 777999999999999999999887765 567899999999888999


Q ss_pred             EEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          700 AAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       700 gs~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ++.|+.|+-||....+++.                ++.+|...|+|++.+|+|.+++++|+|.+|++|.
T Consensus       610 ~gKD~kvKqWDg~kFe~iq----------------~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  610 CGKDGKVKQWDGEKFEEIQ----------------KLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             ecCcceEEeechhhhhhhe----------------eeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence            9999999999988765543                4559999999999999999999999999999995

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=8.5e-23  Score=219.06  Aligned_cols=231  Identities=21%  Similarity=0.304  Sum_probs=191.0

Q ss_pred             ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC-CCEEEEEeC
Q 004207          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGH  575 (768)
Q Consensus       497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd-g~~LaSgs~  575 (768)
                      +.+..+...++++++|...|.|++|+...                   ..-+..+.+|..+|..+.|+|. +..|++|+.
T Consensus        71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-------------------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD  131 (487)
T KOG0310|consen   71 VYSVDFRSDGRLLAAGDESGHVKVFDMKS-------------------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD  131 (487)
T ss_pred             eeEEEeecCCeEEEccCCcCcEEEecccc-------------------HHHHHHHhhccCceeEEEecccCCeEEEecCC
Confidence            34556677899999999999999994211                   1124567899999999999994 557889999


Q ss_pred             CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCe
Q 004207          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  654 (768)
Q Consensus       576 Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~  654 (768)
                      |+.+++||+.+......+.+|++.|.|.+|+|- +.+++|||+||+||+||++.....+..+. |..+|..+.+.|.|. 
T Consensus       132 d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs-  209 (487)
T KOG0310|consen  132 DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGS-  209 (487)
T ss_pred             CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCC-
Confidence            999999999999887789999999999999995 56899999999999999998754455555 889999999999977 


Q ss_pred             EEEEEeCCCcEEEEECCCC-eeEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCc
Q 004207          655 LLCSCDNNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENK  732 (768)
Q Consensus       655 lLaSgs~Dg~I~iWDl~sg-~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~  732 (768)
                      ++++++ ...|++||+-+| +.+..+. ++..|+|+++..++..|++++-|+.|++||+.+.+.++.+            
T Consensus       210 ~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~------------  276 (487)
T KOG0310|consen  210 LIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW------------  276 (487)
T ss_pred             EEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee------------
Confidence            565666 468999999865 4444444 6788999999999999999999999999998776664433            


Q ss_pred             eEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207          733 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  766 (768)
Q Consensus       733 ~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~I  766 (768)
                           .-.++|.+++.+|++..++.|..||.+.+
T Consensus       277 -----~~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  277 -----KYPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             -----ecccceeeEEecCCCceEEEecccceeee
Confidence                 24578999999999999999999998754

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=4.7e-23  Score=219.56  Aligned_cols=264  Identities=21%  Similarity=0.329  Sum_probs=205.8

Q ss_pred             CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccC--CCceeeEEEEecCCCCCeEEEEEcCCCCEE
Q 004207          493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG--KGFTFTEFQLIPASTSKVESCHFSPDGKLL  570 (768)
Q Consensus       493 ~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~l~~H~~~I~sl~fSpdg~~L  570 (768)
                      |-+.+....+.+.+.++.+++.|++|--|....+.+.+....+. +..  .+..+++-.  ++|...|.|++.|+||+||
T Consensus       141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-ev~k~~~~~~k~~r--~~h~keil~~avS~Dgkyl  217 (479)
T KOG0299|consen  141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-EVLKSHGNPLKESR--KGHVKEILTLAVSSDGKYL  217 (479)
T ss_pred             ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc-hhhhhccCCCCccc--ccccceeEEEEEcCCCcEE
Confidence            33444555667788899999999999999776655433332221 111  122222222  4899999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeC
Q 004207          571 ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP  650 (768)
Q Consensus       571 aSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp  650 (768)
                      |+|+.|..|.||+.++.+.+..+.+|.+.|.+++|-.....|++++.|.+|++|+++...+ +.++.+|.+.|.+|+...
T Consensus       218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-vetlyGHqd~v~~IdaL~  296 (479)
T KOG0299|consen  218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VETLYGHQDGVLGIDALS  296 (479)
T ss_pred             EecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-HHHHhCCccceeeechhc
Confidence            9999999999999999999999999999999999998888999999999999999998776 788889999999999887


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCC
Q 004207          651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTE  730 (768)
Q Consensus       651 ~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~  730 (768)
                      .+ .++++|+.|+++++|++.....+-...+.+.+-|++|-.+ ..+++|+.+|.|.+|++-+.+.+....      ..-
T Consensus       297 re-R~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~------~AH  368 (479)
T KOG0299|consen  297 RE-RCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSR------LAH  368 (479)
T ss_pred             cc-ceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEee------ccc
Confidence            64 4787888999999999965443333334567889998876 679999999999999998876654332      111


Q ss_pred             CceE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          731 NKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       731 ~~~~--~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +...  .-..+...|++|+..|..+++++|+.+|.|++|.
T Consensus       369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~  408 (479)
T KOG0299|consen  369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK  408 (479)
T ss_pred             cccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence            1111  1113345899999999999999999999999994

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=7.8e-23  Score=203.63  Aligned_cols=206  Identities=20%  Similarity=0.344  Sum_probs=171.2

Q ss_pred             eeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC-CeEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcE
Q 004207          545 FTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTV  621 (768)
Q Consensus       545 ~~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl~t-~~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtI  621 (768)
                      +.+...+.- .+.+..++|++.. +.+++++.||+++|||+.. .+++..+++|...|.+|.|++ +...++++|.|++|
T Consensus        51 i~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~Ti  129 (311)
T KOG0277|consen   51 IQECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTI  129 (311)
T ss_pred             eEEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCce
Confidence            444444433 3559999999954 4788899999999999643 467888999999999999998 46678899999999


Q ss_pred             EEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-CeeEEEEec-CCCeeEEEEecCCC-EEE
Q 004207          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRLG-RIL  698 (768)
Q Consensus       622 rVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~~-~~~i~sl~fsp~~~-~ll  698 (768)
                      ++|+...+.. +.++.+|...|+...|+|....+|++++.|+.+++||++. |+.+. +.. ...+.++.|+.-.. .++
T Consensus       130 KLW~~~r~~S-v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~  207 (311)
T KOG0277|consen  130 KLWDPNRPNS-VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLA  207 (311)
T ss_pred             EeecCCCCcc-eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEE
Confidence            9999987664 8899999999999999999999999999999999999986 44444 554 44899999987544 577


Q ss_pred             EEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 004207          699 AAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK  768 (768)
Q Consensus       699 ags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IWD  768 (768)
                      +++.|+.|++||++..+.               .+..+.+|.-.|..|.|+|.. .+|++++.|-+++|||
T Consensus       208 Tg~vd~~vr~wDir~~r~---------------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~  263 (311)
T KOG0277|consen  208 TGGVDNLVRGWDIRNLRT---------------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWD  263 (311)
T ss_pred             ecCCCceEEEEehhhccc---------------cceeecCCceEEEEEecCcchhhHhhhccccceEEecc
Confidence            888999999999987542               134567999999999999976 6899999999999997

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.1e-21  Score=192.08  Aligned_cols=252  Identities=17%  Similarity=0.222  Sum_probs=200.2

Q ss_pred             CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 004207          493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT  572 (768)
Q Consensus       493 ~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaS  572 (768)
                      ..-++..+.+++.+.+.++||...+.++..+++-.+.+..    .+..+.......+.-+.|.+.|+|.+|+|+|.+|++
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat  106 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT  106 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence            4556677888889999999999999999876655444322    111122223345666789999999999999999999


Q ss_pred             EeCCCcEEEEECCCCeE-----EEEeccCCCCEEEEEEcCC----CCEEEEEeC-CCcEEEEECCCCCeeEEEeecCCCC
Q 004207          573 GGHDKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPS----LSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTT  642 (768)
Q Consensus       573 gs~Dg~I~VWdl~t~~~-----~~tl~~h~~~V~sl~fspd----g~~LaTgs~-DgtIrVWDl~t~~~~~~~~~~h~~~  642 (768)
                      |+.|++|++.......+     ...+.-|.+.|.+++|-.+    +.+|++++. |..|++-|..++.. +..+.+|.+.
T Consensus       107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~-~~a~sghtgh  185 (350)
T KOG0641|consen  107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG-FHALSGHTGH  185 (350)
T ss_pred             cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc-ceeecCCccc
Confidence            99999999975543222     2345669999999999653    556777654 66788888877765 7889999999


Q ss_pred             eEEEE-EeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207          643 VMSLD-FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       643 V~sla-fsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--------~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                      |.++- |+   ..+|++|+.|.+|++||++-..++.++..        ...|..++..|.|..+++|-.|....+||++.
T Consensus       186 ilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg  262 (350)
T KOG0641|consen  186 ILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG  262 (350)
T ss_pred             EEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence            98874 55   56999999999999999999999888763        24588999999999999999999999999998


Q ss_pred             ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          714 QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       714 ~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +..+..                +..|...|.||.|+|...|+++++.|..|++-|
T Consensus       263 ~r~iq~----------------f~phsadir~vrfsp~a~yllt~syd~~ikltd  301 (350)
T KOG0641|consen  263 GRMIQR----------------FHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTD  301 (350)
T ss_pred             Cceeee----------------eCCCccceeEEEeCCCceEEEEecccceEEEee
Confidence            776543                448999999999999999999999999999854

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.7e-23  Score=219.72  Aligned_cols=225  Identities=23%  Similarity=0.379  Sum_probs=185.1

Q ss_pred             CceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC
Q 004207          542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD  618 (768)
Q Consensus       542 ~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t---~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D  618 (768)
                      ..+..+.+++..|++.|.-+.||++|+|||+++.|.+..||.+..   .+..+++.+|..+|..|.|+||.++|++|+.|
T Consensus       211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~  290 (519)
T KOG0293|consen  211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD  290 (519)
T ss_pred             cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence            345567788999999999999999999999999999999997654   45678999999999999999999999999999


Q ss_pred             CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCE
Q 004207          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR  696 (768)
Q Consensus       619 gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~  696 (768)
                      ..+++||+.++......-.+|...+.+++|.|||.. +++|+.|+.|..||+. |.....++.  ...|.++++.++|.+
T Consensus       291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~  368 (519)
T KOG0293|consen  291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKY  368 (519)
T ss_pred             HheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcE
Confidence            999999999988644444456688999999999886 5599999999999997 555555554  245899999999999


Q ss_pred             EEEEEcCCeEEEEECCCceEeeecc------------------------eeEEeecCCCceE-EeccCCCC--eeEEEEe
Q 004207          697 ILAAAIENYISILDVETQVCRLKLQ------------------------TLELWNMTENKTL-TLSAHDKL--VSSLAAS  749 (768)
Q Consensus       697 llags~Dg~I~IwD~~t~~~~~~~~------------------------~I~iwd~~~~~~~-~l~~H~~~--I~sla~s  749 (768)
                      +++.+.|..|++|+.++........                        .+++||+.+.+.+ .+.+|+..  |..-||-
T Consensus       369 vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg  448 (519)
T KOG0293|consen  369 VLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG  448 (519)
T ss_pred             EEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence            9999999999999987764431111                        8899999977665 56677653  4444554


Q ss_pred             C-CCCEEEEEECCCcEEEeC
Q 004207          750 T-VNGMVASASHDKCVKIWK  768 (768)
Q Consensus       750 p-dg~~LaSgs~DG~V~IWD  768 (768)
                      - +..++++||+|+.|+||+
T Consensus       449 g~~~~fiaSGSED~kvyIWh  468 (519)
T KOG0293|consen  449 GGNDKFIASGSEDSKVYIWH  468 (519)
T ss_pred             CCCcceEEecCCCceEEEEE
Confidence            3 347999999999999996

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.5e-22  Score=216.22  Aligned_cols=214  Identities=21%  Similarity=0.235  Sum_probs=187.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC------
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN------  628 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t------  628 (768)
                      .++|.|+.-+|+|.+|+.|+..|.|++|.+.+|+.+..+..|-..|+|+.|+-|+.+|+||+.||.|++|++.+      
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence            46799999999999999998999999999999999999999999999999999999999999999999998642      


Q ss_pred             --CCeeEEEeecCCCCeEEEEEeCCC-CeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCe
Q 004207          629 --PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY  705 (768)
Q Consensus       629 --~~~~~~~~~~h~~~V~slafsp~g-~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~  705 (768)
                        ...++..+..|.-+|+++...+.+ +..++|++.|.+|++||+..+..+.++.....+.+++.+|-+..+++|+.+|.
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~  240 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK  240 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce
Confidence              223578899999999999987763 34677999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCceEeeecceeEEeecCCCceEEeccCCC--CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          706 ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       706 I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~--~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |.+.++.........-..+.++....+...+.+|.+  .|+|++++-||.+|++|+.||.|+|||
T Consensus       241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd  305 (476)
T KOG0646|consen  241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD  305 (476)
T ss_pred             EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence            999988765422211123455566666677889998  999999999999999999999999997

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=5.4e-23  Score=220.56  Aligned_cols=201  Identities=22%  Similarity=0.325  Sum_probs=174.8

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC
Q 004207          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP  629 (768)
Q Consensus       551 l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~  629 (768)
                      +....+.|++++|..||++||+|...|.|+|||+++...+..+.+|..+|..+.|+|. +..|++|+.|+.+++||+.+.
T Consensus        64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a  143 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA  143 (487)
T ss_pred             HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence            3344567999999999999999999999999998877788899999999999999995 667888999999999999987


Q ss_pred             CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC-eeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI  708 (768)
Q Consensus       630 ~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg-~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~I  708 (768)
                      .. ...+.+|+..|.|.+|+|-..++++||+.||.|++||++.. ..+.++.++.+|..+.+-|.|..|++++ .+.|+|
T Consensus       144 ~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkV  221 (487)
T KOG0310|consen  144 YV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKV  221 (487)
T ss_pred             EE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEE
Confidence            64 67899999999999999999999999999999999999986 8889999999999999999877666655 466888


Q ss_pred             EECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          709 LDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       709 wD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ||+.++....               ..+..|...|+|+++..++..|++||-|+.|+|||
T Consensus       222 WDl~~G~qll---------------~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd  266 (487)
T KOG0310|consen  222 WDLTTGGQLL---------------TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFD  266 (487)
T ss_pred             EEecCCceeh---------------hhhhcccceEEEEEeecCCceEeecccccceEEEE
Confidence            8887543211               12234999999999999999999999999999996

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.90  E-value=4.9e-22  Score=210.12  Aligned_cols=260  Identities=16%  Similarity=0.246  Sum_probs=214.4

Q ss_pred             ccccCCCCCceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCce
Q 004207          473 TLQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT  544 (768)
Q Consensus       473 ~l~~s~s~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~  544 (768)
                      +.+..|..+++.++|.....        +...+....++.....+.+++.|..|++|.+....                 
T Consensus       232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-----------------  294 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-----------------  294 (506)
T ss_pred             CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-----------------
Confidence            45566777888888876543        45555677778888899999999999999654432                 


Q ss_pred             eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc--CCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 004207          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVR  622 (768)
Q Consensus       545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~--h~~~V~sl~fspdg~~LaTgs~DgtIr  622 (768)
                        +...++.|.++|+.+..+|.|+||++++.|++..+.|++++..+.....  ..-.+++++|+|||-+|.+|..|+.|+
T Consensus       295 --~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vk  372 (506)
T KOG0289|consen  295 --EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVK  372 (506)
T ss_pred             --CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEE
Confidence              2345678999999999999999999999999999999999998866543  223589999999999999999999999


Q ss_pred             EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC--CeeEEEEecCCCEEEEE
Q 004207          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAA  700 (768)
Q Consensus       623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~--~i~sl~fsp~~~~llag  700 (768)
                      |||+..+. .+..|.+|.++|.+|+|+.+|. +++++.+|+.|++||+|..+...++....  ++.+++|.+.|.+++++
T Consensus       373 iwdlks~~-~~a~Fpght~~vk~i~FsENGY-~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~  450 (506)
T KOG0289|consen  373 IWDLKSQT-NVAKFPGHTGPVKAISFSENGY-WLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA  450 (506)
T ss_pred             EEEcCCcc-ccccCCCCCCceeEEEeccCce-EEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence            99999877 4888999999999999999865 66688889999999999888777776543  59999999999999999


Q ss_pred             EcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          701 AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      +.|=.|++++-.+..          |.    +...+..|.+..+++.|.....+++++|.|..++|+
T Consensus       451 g~~l~Vy~~~k~~k~----------W~----~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  451 GSDLQVYICKKKTKS----------WT----EIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY  503 (506)
T ss_pred             cceeEEEEEeccccc----------ce----eeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence            888777777754432          11    123455788889999999999999999999999986

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=9.3e-22  Score=200.24  Aligned_cols=256  Identities=20%  Similarity=0.277  Sum_probs=189.6

Q ss_pred             CCccccCCCCCceEEEEecCCCCcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEE
Q 004207          471 RPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL  550 (768)
Q Consensus       471 ~~~l~~s~s~~~~~l~~~~~~~~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  550 (768)
                      +.++..++.+.++.+.|++.              .+.+++.||+|++||+|.......                +.. +.
T Consensus        19 d~ev~~pP~DsIS~l~FSP~--------------~~~~~~A~SWD~tVR~wevq~~g~----------------~~~-ka   67 (347)
T KOG0647|consen   19 DYEVPNPPEDSISALAFSPQ--------------ADNLLAAGSWDGTVRIWEVQNSGQ----------------LVP-KA   67 (347)
T ss_pred             ceecCCCcccchheeEeccc--------------cCceEEecccCCceEEEEEecCCc----------------ccc-hh
Confidence            33555666677777777772              357888999999999996654310                011 34


Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCC
Q 004207          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTEN  628 (768)
Q Consensus       551 l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~--~LaTgs~DgtIrVWDl~t  628 (768)
                      ...|.++|.|++|+.||..+++|+.|+.+++||+.++. +..+..|.++|.++.|-+...  .|+|||+|++|+.||++.
T Consensus        68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~  146 (347)
T KOG0647|consen   68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS  146 (347)
T ss_pred             hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCC
Confidence            46899999999999999999999999999999999984 456778999999999987654  899999999999999997


Q ss_pred             CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE-EEe--cCCCeeEEEEecCCCEEEEEEcCCe
Q 004207          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFK--CQSGATQMRFQPRLGRILAAAIENY  705 (768)
Q Consensus       629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~-~~~--~~~~i~sl~fsp~~~~llags~Dg~  705 (768)
                      ... +.++. -.+.|++++..   ..+++++..+..|.+|+++++.... .+.  ....+.++++..+....+.|+-+|.
T Consensus       147 ~~p-v~t~~-LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr  221 (347)
T KOG0647|consen  147 SNP-VATLQ-LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR  221 (347)
T ss_pred             CCe-eeeee-ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce
Confidence            654 44444 35678888765   3377788889999999998764332 221  2455889999888888899999999


Q ss_pred             EEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          706 ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       706 I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +.|..+........+ ++++- ..++.   ..+.--.|++|+|+|....|+|+|.||++.+||
T Consensus       222 v~iq~id~~~~~~nF-tFkCH-R~~~~---~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD  279 (347)
T KOG0647|consen  222 VAIQYIDDPNPKDNF-TFKCH-RSTNS---VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD  279 (347)
T ss_pred             EEEEecCCCCccCce-eEEEe-ccCCC---CCCceEEecceEeecccceEEEecCCceEEEec
Confidence            999888764221111 01110 00000   000112478899999999999999999999998

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.90  E-value=1.7e-22  Score=225.21  Aligned_cols=251  Identities=23%  Similarity=0.345  Sum_probs=214.2

Q ss_pred             cCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC
Q 004207          498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFSPDGKLLATGGHD  576 (768)
Q Consensus       498 ~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~-H~~~I~sl~fSpdg~~LaSgs~D  576 (768)
                      ....+.+.+.++.+.+...-+++|..+.+     +              .++..++ |.+||.-++|+|.+.++++|+.|
T Consensus        66 ta~~l~~d~~~L~~a~rs~llrv~~L~tg-----k--------------~irswKa~He~Pvi~ma~~~~g~LlAtggaD  126 (775)
T KOG0319|consen   66 TALALTPDEEVLVTASRSQLLRVWSLPTG-----K--------------LIRSWKAIHEAPVITMAFDPTGTLLATGGAD  126 (775)
T ss_pred             heeeecCCccEEEEeeccceEEEEEcccc-----h--------------HhHhHhhccCCCeEEEEEcCCCceEEecccc
Confidence            34445566888888888899999955443     2              2334445 99999999999999999999999


Q ss_pred             CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCe
Q 004207          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  654 (768)
Q Consensus       577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~--~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~  654 (768)
                      +.|+|||+..+.+...+++|.+.|.++.|+|+-.  .|++|..|++|++||+++...++.+...|.+.|++++|.+++..
T Consensus       127 ~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~  206 (775)
T KOG0319|consen  127 GRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLE  206 (775)
T ss_pred             ceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCce
Confidence            9999999999999999999999999999999744  58999999999999999766668888999999999999999776


Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecC-----CCEEEEEEcCCeEEEEECCCceEeeecc--------
Q 004207          655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-----LGRILAAAIENYISILDVETQVCRLKLQ--------  721 (768)
Q Consensus       655 lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~-----~~~llags~Dg~I~IwD~~t~~~~~~~~--------  721 (768)
                      +| +++.|..|.+||+...++.+++.....+.++.+-++     +.++++++.+|.+++||.++..+.....        
T Consensus       207 ~l-s~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~  285 (775)
T KOG0319|consen  207 LL-SVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEID  285 (775)
T ss_pred             EE-EeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhh
Confidence            55 778899999999988888888887778888888877     7799999999999999998875543321        


Q ss_pred             -------------------------------------------------------------eeEEeecCCCceEEeccCC
Q 004207          722 -------------------------------------------------------------TLELWNMTENKTLTLSAHD  740 (768)
Q Consensus       722 -------------------------------------------------------------~I~iwd~~~~~~~~l~~H~  740 (768)
                                                                                   .+++|+..+..+..+.+|+
T Consensus       286 ~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~  365 (775)
T KOG0319|consen  286 HLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHT  365 (775)
T ss_pred             cceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCch
Confidence                                                                         7788888888888889999


Q ss_pred             CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          741 KLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       741 ~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +.|.+++...+|.+|+|||.|.+|++|+
T Consensus       366 e~vlSL~~~~~g~llat~sKD~svilWr  393 (775)
T KOG0319|consen  366 EAVLSLDVWSSGDLLATGSKDKSVILWR  393 (775)
T ss_pred             hheeeeeecccCcEEEEecCCceEEEEE
Confidence            9999999667788999999999999993

>PTZ00421 coronin; Provisional

Probab=99.90  E-value=1.4e-21  Score=222.96  Aligned_cols=200  Identities=16%  Similarity=0.189  Sum_probs=160.8

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWC  583 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWd  583 (768)
                      .+.+|++|+.|++|++|...+....            ......+..+.+|...|.+|+|+|++ .+|++|+.|++|+|||
T Consensus        87 d~~~LaSgS~DgtIkIWdi~~~~~~------------~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWD  154 (493)
T PTZ00421         87 DPQKLFTASEDGTIMGWGIPEEGLT------------QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWD  154 (493)
T ss_pred             CCCEEEEEeCCCEEEEEecCCCccc------------cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEE
Confidence            4578999999999999976543210            00113456788999999999999975 6999999999999999


Q ss_pred             CCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCC-eEEEEEeCCCCeEEEEE---
Q 004207          584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHPSKEDLLCSC---  659 (768)
Q Consensus       584 l~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~-V~slafsp~g~~lLaSg---  659 (768)
                      +.+++.+..+.+|...|.+++|+|++.+|++++.|++|+|||++++.. +..+.+|.+. +..+.|.+++..++++|   
T Consensus       155 l~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~  233 (493)
T PTZ00421        155 VERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-VSSVEAHASAKSQRCLWAKRKDLIITLGCSK  233 (493)
T ss_pred             CCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-EEEEecCCCCcceEEEEcCCCCeEEEEecCC
Confidence            999999999999999999999999999999999999999999998775 6777888765 45678998877666555   


Q ss_pred             eCCCcEEEEECCCCe-eEEEEec--CCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEe
Q 004207          660 DNNSEIRYWSINNGS-CAGVFKC--QSGATQMRFQPRLGRILAAA-IENYISILDVETQVCR  717 (768)
Q Consensus       660 s~Dg~I~iWDl~sg~-~i~~~~~--~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~  717 (768)
                      +.|+.|++||+++.. ++..+..  ...+....|++++..+++++ .|+.|++||+.++...
T Consensus       234 s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~  295 (493)
T PTZ00421        234 SQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT  295 (493)
T ss_pred             CCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence            347999999998754 3333332  23455667899999988887 5999999999887643

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.90  E-value=2e-22  Score=214.92  Aligned_cols=252  Identities=15%  Similarity=0.271  Sum_probs=196.5

Q ss_pred             cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEE
Q 004207          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVL  581 (768)
Q Consensus       503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd-g~~LaSgs~Dg~I~V  581 (768)
                      .-...+||+++..+.|.+|+...........+         .+.+-..+.+|.+.-++++|++. ..+|++++.|++|++
T Consensus       134 PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~l  204 (422)
T KOG0264|consen  134 PQNPNIVATKTSSGDVYVFDYTKHPSKPKASG---------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICL  204 (422)
T ss_pred             CCCCcEEEecCCCCCEEEEEeccCCCcccccc---------cCCCceEEEeecccccccccccccceeEeeccCCCcEEE
Confidence            33467889999999999997765543222111         23445567899998999999994 447999999999999


Q ss_pred             EECCCCe-------EEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CCeeEEEeecCCCCeEEEEEeCCC
Q 004207          582 WCTESFT-------VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPSK  652 (768)
Q Consensus       582 Wdl~t~~-------~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t-~~~~~~~~~~h~~~V~slafsp~g  652 (768)
                      ||+....       ....+.+|...|.+++|++ +..+|++++.|+.+.|||+++ ...+.....+|.+.|.|++|+|-+
T Consensus       205 wdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~  284 (422)
T KOG0264|consen  205 WDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN  284 (422)
T ss_pred             EeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC
Confidence            9986532       3466789999999999999 467899999999999999996 334467788999999999999999


Q ss_pred             CeEEEEEeCCCcEEEEECCCC-eeEEEEec-CCCeeEEEEecCCCE-EEEEEcCCeEEEEECCCceEeeecceeEEeecC
Q 004207          653 EDLLCSCDNNSEIRYWSINNG-SCAGVFKC-QSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQTLELWNMT  729 (768)
Q Consensus       653 ~~lLaSgs~Dg~I~iWDl~sg-~~i~~~~~-~~~i~sl~fsp~~~~-llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~  729 (768)
                      ..+||+|+.|++|++||+|+- .+++++.. ...|.+|.|+|.... |++++.|+.+.|||+..-.......     |..
T Consensus       285 ~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e-----da~  359 (422)
T KOG0264|consen  285 EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE-----DAE  359 (422)
T ss_pred             CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh-----hhc
Confidence            999999999999999999974 45666665 566999999998665 5566789999999997633221100     111


Q ss_pred             CC---ceEEeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 004207          730 EN---KTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK  768 (768)
Q Consensus       730 ~~---~~~~l~~H~~~I~sla~spdg~-~LaSgs~DG~V~IWD  768 (768)
                      .+   -++.-.+|...|..+.|+|... .|+|.+.|+.+.||+
T Consensus       360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~  402 (422)
T KOG0264|consen  360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ  402 (422)
T ss_pred             cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence            22   2335569999999999999986 567788999999995

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.90  E-value=2.1e-23  Score=212.76  Aligned_cols=214  Identities=21%  Similarity=0.317  Sum_probs=178.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe--------ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--------EEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl--------~~h~~~V~sl~fspdg~~LaTgs~DgtIrVW  624 (768)
                      +....+.|..|||||.||++|+.||.|-|||..+|+....+        .-+..+|.|+.|+.|...|++|+.||.|+||
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            34556899999999999999999999999999998876544        3477899999999999999999999999999


Q ss_pred             ECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-CCeeEEEEecCCCEEEEEEcC
Q 004207          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE  703 (768)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-~~i~sl~fsp~~~~llags~D  703 (768)
                      .++++.+..+.-.+|...|+|+.|+.|+..++ +++.|.+|++.-+.+|++++.+.++ ..|+...|.++|.++++++.|
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD  369 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD  369 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence            99999874444458999999999999988666 8999999999999999999999875 458899999999999999999


Q ss_pred             CeEEEEECCCceEeeecc----------------------------eeEEeecCCCceEEecc---CCCCeeEEEEeCCC
Q 004207          704 NYISILDVETQVCRLKLQ----------------------------TLELWNMTENKTLTLSA---HDKLVSSLAASTVN  752 (768)
Q Consensus       704 g~I~IwD~~t~~~~~~~~----------------------------~I~iwd~~~~~~~~l~~---H~~~I~sla~spdg  752 (768)
                      |+|++|+..+.+|...++                            ++.+.++...-+..+..   ..+...+++.+|.|
T Consensus       370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkG  449 (508)
T KOG0275|consen  370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKG  449 (508)
T ss_pred             ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCC
Confidence            999999999988877665                            33333333322223321   23455677789999


Q ss_pred             CEEEEEECCCcEEEe
Q 004207          753 GMVASASHDKCVKIW  767 (768)
Q Consensus       753 ~~LaSgs~DG~V~IW  767 (768)
                      .++++.++|+.++.|
T Consensus       450 ewiYcigED~vlYCF  464 (508)
T KOG0275|consen  450 EWIYCIGEDGVLYCF  464 (508)
T ss_pred             cEEEEEccCcEEEEE
Confidence            999999999999876

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.90  E-value=1.6e-21  Score=202.87  Aligned_cols=275  Identities=14%  Similarity=0.200  Sum_probs=217.4

Q ss_pred             cccCCCCCceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCcee
Q 004207          474 LQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF  545 (768)
Q Consensus       474 l~~s~s~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~  545 (768)
                      +...|+.+...++|.....        +...+....+...+.+||+|..+|.|.+|....+.                  
T Consensus        78 l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~------------------  139 (399)
T KOG0296|consen   78 LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG------------------  139 (399)
T ss_pred             eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc------------------
Confidence            4445555666666665432        33344566677788899999999999999654432                  


Q ss_pred             eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                       ....+...-..|.=+.|+|-+..|+.|+.||.|-+|.+.+......+.+|..++++-.|.|+|++++++..||+|++||
T Consensus       140 -~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn  218 (399)
T KOG0296|consen  140 -EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWN  218 (399)
T ss_pred             -eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEe
Confidence             1222334456688899999999999999999999999999888889999999999999999999999999999999999


Q ss_pred             CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---------CCCeeEEE---EecC
Q 004207          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---------QSGATQMR---FQPR  693 (768)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---------~~~i~sl~---fsp~  693 (768)
                      +.++......-........++.++..+. ++++|+.++.+++.+..+|+.+.....         ...+.++.   ++..
T Consensus       219 ~ktg~p~~~~~~~e~~~~~~~~~~~~~~-~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~  297 (399)
T KOG0296|consen  219 PKTGQPLHKITQAEGLELPCISLNLAGS-TLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSK  297 (399)
T ss_pred             cCCCceeEEecccccCcCCccccccccc-eeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccc
Confidence            9998763333323345678888888865 666999999999999999988877762         22234444   4444


Q ss_pred             CCEEEEEEcCCeEEEEECCCceEeeecc-----------------------eeEEeecCCCceE-EeccCCCCeeEEEEe
Q 004207          694 LGRILAAAIENYISILDVETQVCRLKLQ-----------------------TLELWNMTENKTL-TLSAHDKLVSSLAAS  749 (768)
Q Consensus       694 ~~~llags~Dg~I~IwD~~t~~~~~~~~-----------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~s  749 (768)
                      -...++|+.||+|.|||+...+..+.+.                       .|+.||.+++.++ ++.+|...|.+++++
T Consensus       298 lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls  377 (399)
T KOG0296|consen  298 LPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS  377 (399)
T ss_pred             cchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEc
Confidence            4567788899999999998765444332                       8999999999876 678999999999999


Q ss_pred             CCCCEEEEEECCCcEEEeC
Q 004207          750 TVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       750 pdg~~LaSgs~DG~V~IWD  768 (768)
                      |+.++|+|+|.|++.+||+
T Consensus       378 ~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  378 PQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             CCCcEEEEecCCCeEEEEe
Confidence            9999999999999999985

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.89  E-value=5.8e-22  Score=213.00  Aligned_cols=260  Identities=18%  Similarity=0.237  Sum_probs=197.5

Q ss_pred             CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 004207          493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT  572 (768)
Q Consensus       493 ~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaS  572 (768)
                      ++-+++...+++.+..+++|+.|.+|++|+...- +...+.++           .+.  ......|.++.|++.|..|++
T Consensus       166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gM-das~~~fr-----------~l~--P~E~h~i~sl~ys~Tg~~iLv  231 (641)
T KOG0772|consen  166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGM-DASMRSFR-----------QLQ--PCETHQINSLQYSVTGDQILV  231 (641)
T ss_pred             CceEEEEeeecCCCceeeeccccceEEEEecccc-cccchhhh-----------ccC--cccccccceeeecCCCCeEEE
Confidence            5667778888999999999999999999965432 11111111           111  233456999999999998888


Q ss_pred             EeCCCcEEEEECCCCeEEEEe------------ccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEee--
Q 004207          573 GGHDKKAVLWCTESFTVKSTL------------EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFT--  637 (768)
Q Consensus       573 gs~Dg~I~VWdl~t~~~~~tl------------~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~--  637 (768)
                      .+....++|+|.+..+.+...            ++|...++|.+|+|+ ...|+|++.||++||||++..+.-+..+.  
T Consensus       232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k  311 (641)
T KOG0772|consen  232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK  311 (641)
T ss_pred             EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence            888889999998876655433            579999999999996 45799999999999999987664444433  


Q ss_pred             ---cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeE--EEEe--c--CCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207          638 ---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFK--C--QSGATQMRFQPRLGRILAAAIENYISI  708 (768)
Q Consensus       638 ---~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i--~~~~--~--~~~i~sl~fsp~~~~llags~Dg~I~I  708 (768)
                         +..-++++++|++++. +|++|..||.|.+||.++....  ..++  +  ...|+||.|+++|++|++-+.|+++++
T Consensus       312 ~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv  390 (641)
T KOG0772|consen  312 PAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV  390 (641)
T ss_pred             cCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence               2345789999999988 4778888999999998653322  2221  1  346999999999999999999999999


Q ss_pred             EECCCceEeeecc----------------------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCC
Q 004207          709 LDVETQVCRLKLQ----------------------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNG  753 (768)
Q Consensus       709 wD~~t~~~~~~~~----------------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~  753 (768)
                      ||++..+......                                  .+.+||..+-..+ ++.-....|..+.|+|.-+
T Consensus       391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLN  470 (641)
T KOG0772|consen  391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLN  470 (641)
T ss_pred             eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhh
Confidence            9998753221111                                  5777776654443 4445567799999999999


Q ss_pred             EEEEEECCCcEEEe
Q 004207          754 MVASASHDKCVKIW  767 (768)
Q Consensus       754 ~LaSgs~DG~V~IW  767 (768)
                      .|+.|+.||+++||
T Consensus       471 Qi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  471 QIFAGSGDGTAHVY  484 (641)
T ss_pred             heeeecCCCceEEE
Confidence            99999999999986

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=8.5e-22  Score=222.11  Aligned_cols=255  Identities=16%  Similarity=0.264  Sum_probs=203.1

Q ss_pred             cCCCCCceEEEEecC--------CCCcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeE
Q 004207          476 HNGASSKSLLMFGSD--------GMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE  547 (768)
Q Consensus       476 ~s~s~~~~~l~~~~~--------~~~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~  547 (768)
                      +.+-++..+-.|.-.        ..|.-.+..+.+++...+.++|+.|..|++|++...                   ++
T Consensus        25 LtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r-------------------rc   85 (1202)
T KOG0292|consen   25 LTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR-------------------RC   85 (1202)
T ss_pred             EEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc-------------------ee
Confidence            334445555555432        224555667888999999999999999999966433                   45


Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (768)
Q Consensus       548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~  627 (768)
                      +.++.+|-+.|..+.|++.-.+|+++|.|-+|+||+..+.+++..+.+|...|-|..|+|....++++|-|-+|||||+.
T Consensus        86 lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDis  165 (1202)
T KOG0292|consen   86 LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDIS  165 (1202)
T ss_pred             hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeec
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999999985


Q ss_pred             CC---------------------------C-eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE--
Q 004207          628 NP---------------------------D-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--  677 (768)
Q Consensus       628 t~---------------------------~-~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~--  677 (768)
                      .-                           . .....+.||...|..++|||.-. +|++|++|..|++|.+...+.-.  
T Consensus       166 GLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvD  244 (1202)
T KOG0292|consen  166 GLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVD  244 (1202)
T ss_pred             chhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccceeeh
Confidence            21                           0 12356789999999999999865 88899999999999987533221  


Q ss_pred             E-EecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEE
Q 004207          678 V-FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA  756 (768)
Q Consensus       678 ~-~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~La  756 (768)
                      + ..+...|.++.|+|..+.+++.+.|++|+|||+...+.+..++                ...+.-+.++.+|..++++
T Consensus       245 tcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr----------------rendRFW~laahP~lNLfA  308 (1202)
T KOG0292|consen  245 TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR----------------RENDRFWILAAHPELNLFA  308 (1202)
T ss_pred             hhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee----------------ccCCeEEEEEecCCcceee
Confidence            1 1235679999999999999999999999999998877654432                3345567788888887776


Q ss_pred             EEECCCcEEEe
Q 004207          757 SASHDKCVKIW  767 (768)
Q Consensus       757 Sgs~DG~V~IW  767 (768)
                      .|- |+-+.||
T Consensus       309 AgH-DsGm~VF  318 (1202)
T KOG0292|consen  309 AGH-DSGMIVF  318 (1202)
T ss_pred             eec-CCceEEE
Confidence            554 4444444

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.89  E-value=6.5e-23  Score=215.76  Aligned_cols=242  Identities=19%  Similarity=0.337  Sum_probs=205.7

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      ....+++|+.|..|++|.....                 ....+.++.+..+.|+++.|.++++++++++.|+.+++|++
T Consensus       186 ~sdtlatgg~Dr~Ik~W~v~~~-----------------k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv  248 (459)
T KOG0288|consen  186 NSDTLATGGSDRIIKLWNVLGE-----------------KSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV  248 (459)
T ss_pred             Ccchhhhcchhhhhhhhhcccc-----------------hhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence            4457799999999999955322                 13345677788899999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc
Q 004207          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (768)
Q Consensus       585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~  664 (768)
                      .......++.+|++.|+++.|......+++|+.|.+|++||+....+ .+++.. .+.+..|+..   ...+++|-.|++
T Consensus       249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C-~kt~l~-~S~cnDI~~~---~~~~~SgH~Dkk  323 (459)
T KOG0288|consen  249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC-SKTVLP-GSQCNDIVCS---ISDVISGHFDKK  323 (459)
T ss_pred             cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe-eccccc-cccccceEec---ceeeeecccccc
Confidence            99999999999999999999998777799999999999999998655 443332 2456666665   346779999999


Q ss_pred             EEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-----------------------
Q 004207          665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-----------------------  721 (768)
Q Consensus       665 I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-----------------------  721 (768)
                      |++||+++..++.....++.|+++..++++..+++++.|+++.++|+++......+.                       
T Consensus       324 vRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva  403 (459)
T KOG0288|consen  324 VRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA  403 (459)
T ss_pred             eEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee
Confidence            999999999999999999999999999999999999999999999999987666544                       


Q ss_pred             ------eeEEeecCCCceEEec--cCCC-CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 ------TLELWNMTENKTLTLS--AHDK-LVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 ------~I~iwd~~~~~~~~l~--~H~~-~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                            .|++|++.++++....  .+.. .|++++|+|.|.+|++++.++.+.+|.
T Consensus       404 AGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  404 AGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             eccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence                  8999999998876432  2333 699999999999999999999999994

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.89  E-value=8.3e-22  Score=228.56  Aligned_cols=260  Identities=19%  Similarity=0.292  Sum_probs=198.8

Q ss_pred             CccccCCCCEEEeec--CCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 004207          499 PNQLTDMDRFVDDGS--LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD  576 (768)
Q Consensus       499 ~~~l~~~~~~latGS--~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D  576 (768)
                      ++.+++....+++|+  .|+.+++|....-.+.       .+.....-.+.+.....|.+.|+|+.|++||.+||+|+.|
T Consensus        18 SIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~-------~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   18 SIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE-------KEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             EEEecCCceeEecCCccccccceeeccccccch-------hhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            444566777889999  9999999943221100       0000000123456678999999999999999999999999


Q ss_pred             CcEEEEECCC------------------CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeec
Q 004207          577 KKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (768)
Q Consensus       577 g~I~VWdl~t------------------~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~  638 (768)
                      +.|.||....                  .+++..+.+|...|.+++|+|++.+|++++.|++|.||+..+. ..+..+.+
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~  169 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRG  169 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeec
Confidence            9999998762                  2467788999999999999999999999999999999999998 55899999


Q ss_pred             CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-------CCCeeEEEEecCCCEEEEEEc----CCeEE
Q 004207          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILAAAI----ENYIS  707 (768)
Q Consensus       639 h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-------~~~i~sl~fsp~~~~llags~----Dg~I~  707 (768)
                      |.+.|..+.|+|-|+ +||+-+.|++|+||++.+..+.+.+..       ...+..+.|+|+|.+|++...    -.++.
T Consensus       170 H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~  248 (942)
T KOG0973|consen  170 HQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA  248 (942)
T ss_pred             ccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence            999999999999987 777999999999999888777766653       234778999999998887542    23455


Q ss_pred             EEECCCceEee------------------------------------------ecceeEEeecCCCceEEec--cCCCCe
Q 004207          708 ILDVETQVCRL------------------------------------------KLQTLELWNMTENKTLTLS--AHDKLV  743 (768)
Q Consensus       708 IwD~~t~~~~~------------------------------------------~~~~I~iwd~~~~~~~~l~--~H~~~I  743 (768)
                      |++-.+.++..                                          ..++|.+|.....+++...  --...|
T Consensus       249 IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI  328 (942)
T KOG0973|consen  249 IIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSI  328 (942)
T ss_pred             EEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCce
Confidence            55443332111                                          1116777776555554322  224579


Q ss_pred             eEEEEeCCCCEEEEEECCCcEEEe
Q 004207          744 SSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       744 ~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      .+++|+|||..|+.+|.||+|.++
T Consensus       329 ~DmsWspdG~~LfacS~DGtV~~i  352 (942)
T KOG0973|consen  329 VDMSWSPDGFSLFACSLDGTVALI  352 (942)
T ss_pred             eeeeEcCCCCeEEEEecCCeEEEE
Confidence            999999999999999999999886

>PTZ00420 coronin; Provisional

Probab=99.89  E-value=4.1e-21  Score=220.70  Aligned_cols=180  Identities=22%  Similarity=0.325  Sum_probs=153.2

Q ss_pred             EeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCe-------eEEEeecCCCCeE
Q 004207          573 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVM  644 (768)
Q Consensus       573 gs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~-------~~~~~~~h~~~V~  644 (768)
                      |+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.++..       .+..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            567889999998887888899999999999999996 78999999999999999976431       2446788999999


Q ss_pred             EEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeE
Q 004207          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLE  724 (768)
Q Consensus       645 slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~  724 (768)
                      +|+|+|++..+|++++.|++|+|||++++..+..+.+...|.+++|+|++..|++++.|+.|+|||++++....      
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~------  203 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS------  203 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE------
Confidence            99999998888889999999999999999888877777889999999999999999999999999999876543      


Q ss_pred             EeecCCCceEEeccCCCCeeE-----EEEeCCCCEEEEEECCC----cEEEeC
Q 004207          725 LWNMTENKTLTLSAHDKLVSS-----LAASTVNGMVASASHDK----CVKIWK  768 (768)
Q Consensus       725 iwd~~~~~~~~l~~H~~~I~s-----la~spdg~~LaSgs~DG----~V~IWD  768 (768)
                                .+.+|.+.+.+     ..|++++.+|++++.|+    .|+|||
T Consensus       204 ----------tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWD  246 (568)
T PTZ00420        204 ----------SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWD  246 (568)
T ss_pred             ----------EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEE
Confidence                      23467665433     33558889999988775    799997

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.4e-21  Score=199.24  Aligned_cols=279  Identities=19%  Similarity=0.298  Sum_probs=217.6

Q ss_pred             cCCCCCceEEEEecCCCCcc--------cccCccccCCCCEEEeecCCCcEEEee------cCCC-----CCCCCccc--
Q 004207          476 HNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFL------SPDD-----ADPRDRVG--  534 (768)
Q Consensus       476 ~s~s~~~~~l~~~~~~~~~~--------~~~~~~l~~~~~~latGS~D~~v~~w~------~~~~-----~d~~~~~~--  534 (768)
                      ..++.+.+...|+.....|+        .+.++.++..+.++.++|-|++.++|.      .+..     ..+.+...  
T Consensus       164 gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~s  243 (481)
T KOG0300|consen  164 GTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHS  243 (481)
T ss_pred             eecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcc
Confidence            34556777778887765333        344778888999999999999999995      1111     01111111  


Q ss_pred             ----cccc---cCCCcee-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEc
Q 004207          535 ----RSAE---VGKGFTF-TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS  606 (768)
Q Consensus       535 ----~~~~---~~~~~~~-~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fs  606 (768)
                          +..+   ..++.++ .++..+.+|.+.|.|+.|-..|+.+++++.|.+..+||+++++++..+.+|....+.++-+
T Consensus       244 De~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstH  323 (481)
T KOG0300|consen  244 DEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTH  323 (481)
T ss_pred             cccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccC
Confidence                1111   1223333 3677889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC-eeEEEEecCCCe
Q 004207          607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGA  685 (768)
Q Consensus       607 pdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg-~~i~~~~~~~~i  685 (768)
                      |.-++++|++.|.+.++||++..-..+..|.+|...|+++.|.-+.+  +++|+.|.+|++||+++. ..+.++....++
T Consensus       324 ptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIRtdS~~  401 (481)
T KOG0300|consen  324 PTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIRTDSPA  401 (481)
T ss_pred             CcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeeecCCcc
Confidence            99999999999999999999976666889999999999999998744  669999999999999974 577888888999


Q ss_pred             eEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC--CEEEEEECCCc
Q 004207          686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN--GMVASASHDKC  763 (768)
Q Consensus       686 ~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg--~~LaSgs~DG~  763 (768)
                      ..++++..+..|+.--.+..|++||+.........            ...-.+|...|+|++|..+.  .-|++++-|..
T Consensus       402 NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP------------rtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~  469 (481)
T KOG0300|consen  402 NRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP------------RTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRM  469 (481)
T ss_pred             ceeEeecCCceEEeccCCceEEEEecCCCccccCC------------cccccccceeeeeeeccccCcccccccccccce
Confidence            99999886555555555667999998765432111            11234899999999998654  46789999998


Q ss_pred             EEEeC
Q 004207          764 VKIWK  768 (768)
Q Consensus       764 V~IWD  768 (768)
                      +.=|+
T Consensus       470 v~gW~  474 (481)
T KOG0300|consen  470 VAGWK  474 (481)
T ss_pred             eeeeE
Confidence            88774

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.88  E-value=6.4e-21  Score=191.20  Aligned_cols=202  Identities=21%  Similarity=0.257  Sum_probs=175.2

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004207          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (768)
Q Consensus       550 ~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~  629 (768)
                      .+.+|..+|+-|.|+.+|.+|++|+.|.++.||-..+++.+.++.+|++.|+||..+.+.++|+||+.|.++++||++++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            35789999999999999999999999999999999899999999999999999999999999999999999999999999


Q ss_pred             CeeEEEeecCCCCeEEEEEeCCCCeEEEEEe----CCCcEEEEECCC-------CeeEEEEec-CCCeeEEEEecCCCEE
Q 004207          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSINN-------GSCAGVFKC-QSGATQMRFQPRLGRI  697 (768)
Q Consensus       630 ~~~~~~~~~h~~~V~slafsp~g~~lLaSgs----~Dg~I~iWDl~s-------g~~i~~~~~-~~~i~sl~fsp~~~~l  697 (768)
                      +. +..+. ...+|..+.|+.+|+.++++.+    ..+.|.++|++.       .+++..+.. ...++.+.|.|.+.+|
T Consensus        85 k~-la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   85 KQ-LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             cE-EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            86 55555 4578999999999886665543    347899999983       444555543 6779999999999999


Q ss_pred             EEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          698 LAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       698 lags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ++|..||.|.+||++++.....               ....|...|+.+.+++|..+|+++|.|.+-++||
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~---------------s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D  218 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVD---------------SDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVD  218 (327)
T ss_pred             EEecCCCcEEEEEcccCceeee---------------chhhhccccccccccCCcceEEecccCccceeee
Confidence            9999999999999998644321               1236888999999999999999999999999997

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=7.7e-22  Score=217.17  Aligned_cols=233  Identities=16%  Similarity=0.266  Sum_probs=198.1

Q ss_pred             CCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (768)
Q Consensus       504 ~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWd  583 (768)
                      +.++++.+|+.|+.|++|.........             .-.....+..|.+.|..+....+++.|++++.|-+|++|+
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~-------------s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~  101 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEP-------------STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWN  101 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCc-------------ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEee
Confidence            457789999999999999655442110             0113556778999999999999999999999999999999


Q ss_pred             CCCC--eEEEEeccCCCCEEEEEE-cCCCCEEEEEeCCCcEEEEECCCCCe---------eEEEee-cCCCCeEEEEEeC
Q 004207          584 TESF--TVKSTLEEHTQWITDVRF-SPSLSRLATSSADRTVRVWDTENPDY---------SLRTFT-GHSTTVMSLDFHP  650 (768)
Q Consensus       584 l~t~--~~~~tl~~h~~~V~sl~f-spdg~~LaTgs~DgtIrVWDl~t~~~---------~~~~~~-~h~~~V~slafsp  650 (768)
                      ....  -++.++..|.+.|.|+++ .++...+|+|+-|+.|.|||++++..         ....+. ++...|++++.++
T Consensus       102 ~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~  181 (735)
T KOG0308|consen  102 AHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ  181 (735)
T ss_pred             cccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence            8876  577888999999999999 78889999999999999999997622         122233 7889999999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecC
Q 004207          651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMT  729 (768)
Q Consensus       651 ~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~  729 (768)
                      .| .+|++|+..+.|++||.++.+.+..+.+ ...|..+..+++|..++++++||+|++||+...+|...          
T Consensus       182 t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T----------  250 (735)
T KOG0308|consen  182 TG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT----------  250 (735)
T ss_pred             cc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee----------
Confidence            87 5888999999999999999888777775 45699999999999999999999999999998887653          


Q ss_pred             CCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207          730 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  766 (768)
Q Consensus       730 ~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~I  766 (768)
                            +..|+..|+++..+|+-.+|++|+.||.|..
T Consensus       251 ------~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~  281 (735)
T KOG0308|consen  251 ------YIVHKEGVWALQSSPSFTHVYSGGRDGNIYR  281 (735)
T ss_pred             ------EEeccCceEEEeeCCCcceEEecCCCCcEEe
Confidence                  4489999999999999999999999999875

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.88  E-value=7.9e-22  Score=200.77  Aligned_cols=205  Identities=27%  Similarity=0.422  Sum_probs=173.5

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------------------CeEEEEeccCCCCEEEEEEcCC
Q 004207          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSPS  608 (768)
Q Consensus       547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t------------------~~~~~tl~~h~~~V~sl~fspd  608 (768)
                      +...+..|+.++.+.+|++||.++|+|+.|..|+|+|++.                  --+++++..|.+.|+++.|+|.
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            4566789999999999999999999999999999999871                  1256788899999999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCe--eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----cC
Q 004207          609 LSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQ  682 (768)
Q Consensus       609 g~~LaTgs~DgtIrVWDl~t~~~--~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~----~~  682 (768)
                      ..+|++|+.|++|++||+.....  ..+.+. ...+|.+|.|||.|+.++ +|..-.++++||+.+..|...-.    +.
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht  261 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHT  261 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCcccccc
Confidence            99999999999999999976432  122232 346899999999998555 78888899999999988765443    35


Q ss_pred             CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCC-CCeeEEEEeCCCCEEEEEECC
Q 004207          683 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHD  761 (768)
Q Consensus       683 ~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~-~~I~sla~spdg~~LaSgs~D  761 (768)
                      +.|+++.+++.+...++++.||.|++||--+.+|+..+.               .+|. ..|.+..|..+++||++.|.|
T Consensus       262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~---------------~AH~gsevcSa~Ftkn~kyiLsSG~D  326 (430)
T KOG0640|consen  262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG---------------NAHGGSEVCSAVFTKNGKYILSSGKD  326 (430)
T ss_pred             cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH---------------hhcCCceeeeEEEccCCeEEeecCCc
Confidence            679999999999999999999999999988888765544               2565 468999999999999999999


Q ss_pred             CcEEEeC
Q 004207          762 KCVKIWK  768 (768)
Q Consensus       762 G~V~IWD  768 (768)
                      ..|++|+
T Consensus       327 S~vkLWE  333 (430)
T KOG0640|consen  327 STVKLWE  333 (430)
T ss_pred             ceeeeee
Confidence            9999995

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=5.5e-22  Score=222.02  Aligned_cols=229  Identities=18%  Similarity=0.329  Sum_probs=190.2

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWC  583 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWd  583 (768)
                      .+++|++++..|.|.+|+.....                .-+.+..|..|...|++++|++ .-.+|++|+.||+|++||
T Consensus        99 ~~NlIAT~s~nG~i~vWdlnk~~----------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~D  162 (839)
T KOG0269|consen   99 YSNLIATCSTNGVISVWDLNKSI----------------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWD  162 (839)
T ss_pred             hhhhheeecCCCcEEEEecCccc----------------cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEe
Confidence            46789999999999999654321                1123456789999999999998 456899999999999999


Q ss_pred             CCCCeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC
Q 004207          584 TESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (768)
Q Consensus       584 l~t~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D  662 (768)
                      ++..+...++.+....|.+|.|+|. +.+|+++...|.|.+||++.+..+...+.+|.++|.|+.|||+ +.+||||+.|
T Consensus       163 lR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn-r~~lATGGRD  241 (839)
T KOG0269|consen  163 LRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN-REWLATGGRD  241 (839)
T ss_pred             eecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC-CceeeecCCC
Confidence            9999988899888999999999994 7889999999999999999998888999999999999999996 4588899999


Q ss_pred             CcEEEEECCCCe--eEEEEecCCCeeEEEEecCCCEEEEEE---cCCeEEEEECCCceEeeecceeEEeecCCCceEEec
Q 004207          663 SEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAA---IENYISILDVETQVCRLKLQTLELWNMTENKTLTLS  737 (768)
Q Consensus       663 g~I~iWDl~sg~--~i~~~~~~~~i~sl~fsp~~~~llags---~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~  737 (768)
                      +.|+|||+.+.+  .+.++....++.+|.|-|...+.++.+   .|-.|+|||++..-..               ..++.
T Consensus       242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP---------------~~t~~  306 (839)
T KOG0269|consen  242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP---------------YATFL  306 (839)
T ss_pred             ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccc---------------ceeee
Confidence            999999998643  556677778999999999988755544   3677888888653221               22566


Q ss_pred             cCCCCeeEEEEeC-CCCEEEEEECCCcEE
Q 004207          738 AHDKLVSSLAAST-VNGMVASASHDKCVK  765 (768)
Q Consensus       738 ~H~~~I~sla~sp-dg~~LaSgs~DG~V~  765 (768)
                      .|...++.++|.. |...|.+++.||+|.
T Consensus       307 eH~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  307 EHTDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             ccCccccceeccCCCceeeEeecCccHHH
Confidence            8999999999975 346899999999874

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=2.6e-21  Score=191.87  Aligned_cols=247  Identities=18%  Similarity=0.244  Sum_probs=192.8

Q ss_pred             CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC--CCCEE
Q 004207          493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLL  570 (768)
Q Consensus       493 ~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp--dg~~L  570 (768)
                      +...+....++--+..|+++|.|++|++|......                ....+.++.+|.++|.-++|..  -|.+|
T Consensus        10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~----------------~s~ll~~L~Gh~GPVwqv~wahPk~G~iL   73 (299)
T KOG1332|consen   10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG----------------QSKLLAELTGHSGPVWKVAWAHPKFGTIL   73 (299)
T ss_pred             hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC----------------CceeeeEecCCCCCeeEEeecccccCcEe
Confidence            34445556667778899999999999999554331                1356778899999999999976  79999


Q ss_pred             EEEeCCCcEEEEECCCCe--EEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCC--CeeEEEeecCCCCeE
Q 004207          571 ATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENP--DYSLRTFTGHSTTVM  644 (768)
Q Consensus       571 aSgs~Dg~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVWDl~t~--~~~~~~~~~h~~~V~  644 (768)
                      |+|+.||.|.||.-++++  .......|...|++|+|.|.  |-.|++++.||.|.|.+++..  ....+...+|.-.|+
T Consensus        74 AScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvn  153 (299)
T KOG1332|consen   74 ASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVN  153 (299)
T ss_pred             eEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccc
Confidence            999999999999988764  33455679999999999996  668999999999999998764  233466778999999


Q ss_pred             EEEEeCC---C----------CeEEEEEeCCCcEEEEECCCCeeE--EEEec-CCCeeEEEEecCC----CEEEEEEcCC
Q 004207          645 SLDFHPS---K----------EDLLCSCDNNSEIRYWSINNGSCA--GVFKC-QSGATQMRFQPRL----GRILAAAIEN  704 (768)
Q Consensus       645 slafsp~---g----------~~lLaSgs~Dg~I~iWDl~sg~~i--~~~~~-~~~i~sl~fsp~~----~~llags~Dg  704 (768)
                      +++|.|.   |          -..|++|+.|..|+||+..+++-+  .++.. .+-|..++|.|..    .+|++++.|+
T Consensus       154 sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg  233 (299)
T KOG1332|consen  154 SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG  233 (299)
T ss_pred             eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence            9999985   3          135789999999999999886432  23433 3458899999875    3589999999


Q ss_pred             eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          705 YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       705 ~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +|.||..+....        -|     +...+......+..+.|+..|++|++++.|..|++|+
T Consensus       234 ~viIwt~~~e~e--------~w-----k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  234 TVIIWTKDEEYE--------PW-----KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             cEEEEEecCccC--------cc-----cccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            999998763211        11     1122233557799999999999999999999999995

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.87  E-value=4e-21  Score=212.34  Aligned_cols=199  Identities=22%  Similarity=0.354  Sum_probs=172.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCC
Q 004207          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENP  629 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd---g~~LaTgs~DgtIrVWDl~t~  629 (768)
                      +..-.|.|++++|+|++||+|..-|+++||++...+....++.|...|.|+.|+..   .++||+++.|.-|+|||+...
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn  536 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN  536 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence            34556999999999999999999999999999999999999999999999999852   578999999999999999865


Q ss_pred             CeeEEEeecCCCCeEEEEEeC-------------------------------------------------CCCeEEEEEe
Q 004207          630 DYSLRTFTGHSTTVMSLDFHP-------------------------------------------------SKEDLLCSCD  660 (768)
Q Consensus       630 ~~~~~~~~~h~~~V~slafsp-------------------------------------------------~g~~lLaSgs  660 (768)
                      -..+.++.+|...|++|.|..                                                 ..+ ++++++
T Consensus       537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~c  615 (1080)
T KOG1408|consen  537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVC  615 (1080)
T ss_pred             cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEe
Confidence            555566666666666666643                                                 323 456788


Q ss_pred             CCCcEEEEECCCCeeEEEEec----CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEe
Q 004207          661 NNSEIRYWSINNGSCAGVFKC----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTL  736 (768)
Q Consensus       661 ~Dg~I~iWDl~sg~~i~~~~~----~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l  736 (768)
                      .|..|+|||+.+++.++.|+.    ++....+...|.+.|+++.+.|.++.+||+.+++|+...                
T Consensus       616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m----------------  679 (1080)
T KOG1408|consen  616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM----------------  679 (1080)
T ss_pred             cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh----------------
Confidence            899999999999999999986    356888999999999999999999999999998886543                


Q ss_pred             ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          737 SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       737 ~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .+|...|+.+.|.+|.++|++.+.||+|.||+
T Consensus       680 ~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~  711 (1080)
T KOG1408|consen  680 TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK  711 (1080)
T ss_pred             cCcchheeeeeecccchhheeecCCceEEEEE
Confidence            49999999999999999999999999999995

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.87  E-value=6.3e-21  Score=211.51  Aligned_cols=245  Identities=20%  Similarity=0.304  Sum_probs=193.0

Q ss_pred             cccCCCCCceEEEEecCCC-----------CcccccCccccCCC-CEEEeecCCCcEEEeecCCCCCCCCccccccccCC
Q 004207          474 LQHNGASSKSLLMFGSDGM-----------GSLTSAPNQLTDMD-RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK  541 (768)
Q Consensus       474 l~~s~s~~~~~l~~~~~~~-----------~~~~~~~~~l~~~~-~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~  541 (768)
                      .+.+++++.+..+|...+.           ..+......+...+ ..+.+|+.|.++.+|...                 
T Consensus        27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~-----------------   89 (745)
T KOG0301|consen   27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS-----------------   89 (745)
T ss_pred             EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecC-----------------
Confidence            4677888888888887443           11112223333333 347889999999999332                 


Q ss_pred             CceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 004207          542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV  621 (768)
Q Consensus       542 ~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtI  621 (768)
                        ...++.++++|...|.|++...++. +++|+.|.+++||..  +++...+.+|...|+++++-|+. .++|||.|++|
T Consensus        90 --~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtI  163 (745)
T KOG0301|consen   90 --QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTI  163 (745)
T ss_pred             --CCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCccee
Confidence              2245778899999999999877777 999999999999975  46667799999999999999987 88999999999


Q ss_pred             EEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEE
Q 004207          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA  700 (768)
Q Consensus       622 rVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llag  700 (768)
                      ++|.-.   ..++++.+|...|..+++.+++.  |++|+.||.|++|++ +|+++....+ ...+.++....+++.++++
T Consensus       164 klWk~~---~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~  237 (745)
T KOG0301|consen  164 KLWKGG---TLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVST  237 (745)
T ss_pred             eeccCC---chhhhhccchhheeeeEEecCCC--eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEe
Confidence            999863   35889999999999999998855  569999999999999 5777776665 5568899988888999999


Q ss_pred             EcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCC-CCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          701 AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~-~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      +.|++++||+..  .|...+                 .|. ..|+++.+-++|+ |++|+.||.|+||
T Consensus       238 gEDrtlriW~~~--e~~q~I-----------------~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf  285 (745)
T KOG0301|consen  238 GEDRTLRIWKKD--ECVQVI-----------------TLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF  285 (745)
T ss_pred             cCCceEEEeecC--ceEEEE-----------------ecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence            999999999876  222211                 232 3678888877776 6789999999998

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.5e-22  Score=224.90  Aligned_cols=222  Identities=22%  Similarity=0.325  Sum_probs=193.7

Q ss_pred             cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (768)
Q Consensus       503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VW  582 (768)
                      ....+++++|+.|..+.+|.....                   ..+..+.+|..+|.||.|+++..+|+.|+.+|+|+||
T Consensus        37 ~~s~r~~~~Gg~~~k~~L~~i~kp-------------------~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~w   97 (825)
T KOG0267|consen   37 RKSSRSLVTGGEDEKVNLWAIGKP-------------------NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVW   97 (825)
T ss_pred             eccceeeccCCCceeeccccccCC-------------------chhheeeccCCcceeeecCcchhhhcccccCCceeee
Confidence            456789999999999999944322                   1233478999999999999999999999999999999


Q ss_pred             ECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC
Q 004207          583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (768)
Q Consensus       583 dl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D  662 (768)
                      |++..+.++++.+|...+.+|.|+|-+.+++.|+.|+.+++||++...+ ...+.+|...|.++.|+|+|. +++++++|
T Consensus        98 DleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc-~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed  175 (825)
T KOG0267|consen   98 DLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC-SHTYKSHTRVVDVLRLSPDGR-WVASGGED  175 (825)
T ss_pred             ehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCc-eeeecCCcceeEEEeecCCCc-eeeccCCc
Confidence            9999999999999999999999999999999999999999999997554 888899999999999999987 66689999


Q ss_pred             CcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCC
Q 004207          663 SEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK  741 (768)
Q Consensus       663 g~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~  741 (768)
                      .+++|||+..|+.+..|+ +.+.+..+.|+|..-.+..|+.|.+|++||+++...+...+                ....
T Consensus       176 ~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~----------------~~~~  239 (825)
T KOG0267|consen  176 NTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK----------------PETD  239 (825)
T ss_pred             ceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC----------------CccC
Confidence            999999999999999998 56779999999997778889999999999999876654332                3356


Q ss_pred             CeeEEEEeCCCCEEEEEECC
Q 004207          742 LVSSLAASTVNGMVASASHD  761 (768)
Q Consensus       742 ~I~sla~spdg~~LaSgs~D  761 (768)
                      .|.+++|+|++..+++|..+
T Consensus       240 ~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  240 GVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             CceeeeecCCceeeecCchh
Confidence            79999999999988888654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.87  E-value=1.6e-20  Score=187.82  Aligned_cols=229  Identities=18%  Similarity=0.300  Sum_probs=188.2

Q ss_pred             cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEE
Q 004207          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVL  581 (768)
Q Consensus       503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~V  581 (768)
                      .-.+..+++|+.|+++.+|+....                 .+..-...++|.+.|..++|+| ....|++++.|++|++
T Consensus        29 n~~g~~lasgs~dktv~v~n~e~~-----------------r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~   91 (313)
T KOG1407|consen   29 NCDGTKLASGSFDKTVSVWNLERD-----------------RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRI   91 (313)
T ss_pred             cccCceeeecccCCceEEEEecch-----------------hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEE
Confidence            345678999999999999966433                 1112234579999999999998 5568999999999999


Q ss_pred             EECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe------------------------------
Q 004207          582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY------------------------------  631 (768)
Q Consensus       582 Wdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~------------------------------  631 (768)
                      ||+..+++...+....+. .-+.|+|+|.+++.++.|..|.+.|.++.+.                              
T Consensus        92 wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~  170 (313)
T KOG1407|consen   92 WDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC  170 (313)
T ss_pred             EEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence            999999999888755444 4678999999999999999998888763211                              


Q ss_pred             ----------eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEE
Q 004207          632 ----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA  700 (768)
Q Consensus       632 ----------~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llag  700 (768)
                                ++..+.+|.....||.|+|+|+ .|++|+.|-.+.+||+..--|++.+.. .-+|..+.|+.+|.+|+++
T Consensus       171 v~ILsypsLkpv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa  249 (313)
T KOG1407|consen  171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA  249 (313)
T ss_pred             EEEEeccccccccccccCCcceEEEEECCCCc-eEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence                      2345668999999999999987 777999999999999998888888864 6789999999999999999


Q ss_pred             EcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC---------CcEEEe
Q 004207          701 AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD---------KCVKIW  767 (768)
Q Consensus       701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D---------G~V~IW  767 (768)
                      +.|..|-|=+++++..+..+                 .+.++...|+|+|...+||-+++|         |+||||
T Consensus       250 SEDh~IDIA~vetGd~~~eI-----------------~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF  308 (313)
T KOG1407|consen  250 SEDHFIDIAEVETGDRVWEI-----------------PCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF  308 (313)
T ss_pred             CccceEEeEecccCCeEEEe-----------------eccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence            99999999888887654332                 478889999999999999988764         577775

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=4.8e-20  Score=189.43  Aligned_cols=219  Identities=23%  Similarity=0.324  Sum_probs=175.9

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC--CCcEEEE
Q 004207          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW  624 (768)
Q Consensus       547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~--DgtIrVW  624 (768)
                      ..+.++.-.+.|+++.|+++|.++++++.|.+|+|||..+++.+.++..+...|..++|......++.++.  |.+||..
T Consensus         6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL   85 (311)
T KOG1446|consen    6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL   85 (311)
T ss_pred             cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence            33445556788999999999999999999999999999999999999988888999999877777777776  8899999


Q ss_pred             ECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCC
Q 004207          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN  704 (768)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg  704 (768)
                      ++.+.++ ++.+.||...|.+|+.+|-++ .|++++.|++|++||++..+|...+... .-..++|+|.|-+++++...+
T Consensus        86 sl~dNky-lRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~pi~AfDp~GLifA~~~~~~  162 (311)
T KOG1446|consen   86 SLHDNKY-LRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLS-GRPIAAFDPEGLIFALANGSE  162 (311)
T ss_pred             EeecCce-EEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecC-CCcceeECCCCcEEEEecCCC
Confidence            9999887 999999999999999999975 6669999999999999988888777653 334578999987777777777


Q ss_pred             eEEEEECCCceEe--eecc----------------------------eeEEeecCCCceE-EeccCCC---CeeEEEEeC
Q 004207          705 YISILDVETQVCR--LKLQ----------------------------TLELWNMTENKTL-TLSAHDK---LVSSLAAST  750 (768)
Q Consensus       705 ~I~IwD~~t~~~~--~~~~----------------------------~I~iwd~~~~~~~-~l~~H~~---~I~sla~sp  750 (768)
                      .|++||++.....  ..+.                            .+.+.|.-+|.+. ++..+..   .....+|+|
T Consensus       163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP  242 (311)
T KOG1446|consen  163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP  242 (311)
T ss_pred             eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence            9999999875211  0000                            3444555555443 3333322   225678999


Q ss_pred             CCCEEEEEECCCcEEEeC
Q 004207          751 VNGMVASASHDKCVKIWK  768 (768)
Q Consensus       751 dg~~LaSgs~DG~V~IWD  768 (768)
                      |+.+|++|+.||+|.||+
T Consensus       243 ds~Fvl~gs~dg~i~vw~  260 (311)
T KOG1446|consen  243 DSKFVLSGSDDGTIHVWN  260 (311)
T ss_pred             CCcEEEEecCCCcEEEEE
Confidence            999999999999999996

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.86  E-value=1.7e-20  Score=198.49  Aligned_cols=228  Identities=18%  Similarity=0.205  Sum_probs=191.8

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~  585 (768)
                      ..++.+|+.|.++-+|+....                   ..+.+++||...|+.+.|+++...+++++.|..|+||...
T Consensus       231 ~~~ilTGG~d~~av~~d~~s~-------------------q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~  291 (506)
T KOG0289|consen  231 SSKILTGGEDKTAVLFDKPSN-------------------QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVP  291 (506)
T ss_pred             CCcceecCCCCceEEEecchh-------------------hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccc
Confidence            467899999999999954322                   3467788999999999999999999999999999999998


Q ss_pred             CCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee-cCCCCeEEEEEeCCCCeEEEEEeCCCc
Q 004207          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (768)
Q Consensus       586 t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~-~h~~~V~slafsp~g~~lLaSgs~Dg~  664 (768)
                      ..........|..+|+.+..+|.|.||++++.|++..+.|++++........ ...-.+++.+|||||- +|.+|..|+.
T Consensus       292 ~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~  370 (506)
T KOG0289|consen  292 LSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGV  370 (506)
T ss_pred             cccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCce
Confidence            8777888889999999999999999999999999999999999876333322 2334589999999975 8889999999


Q ss_pred             EEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCe
Q 004207          665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLV  743 (768)
Q Consensus       665 I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I  743 (768)
                      |+|||+.+...+..|.. .++|..+.|+.+|-++++++.|+.|++||++..+....+              .+ .....|
T Consensus       371 vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~--------------~l-~~~~~v  435 (506)
T KOG0289|consen  371 VKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI--------------QL-DEKKEV  435 (506)
T ss_pred             EEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee--------------ec-cccccc
Confidence            99999999988888875 567999999999999999999999999999886532221              11 222368


Q ss_pred             eEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          744 SSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       744 ~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .+++|...|.+|+.++.|=.|++++
T Consensus       436 ~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  436 NSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             eeEEEcCCCCeEEeecceeEEEEEe
Confidence            9999999999999998887777664

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.86  E-value=2.4e-21  Score=201.08  Aligned_cols=247  Identities=16%  Similarity=0.230  Sum_probs=193.7

Q ss_pred             cccCccccCCC-CEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 004207          496 TSAPNQLTDMD-RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG  574 (768)
Q Consensus       496 ~~~~~~l~~~~-~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs  574 (768)
                      ++...+.++.. ..+++|+.||.|++|+...                   ..++..+.+|.+.|..|++..  ..+++++
T Consensus        68 GV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-------------------R~~~~~f~AH~G~V~Gi~v~~--~~~~tvg  126 (433)
T KOG0268|consen   68 GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-------------------RECIRTFKAHEGLVRGICVTQ--TSFFTVG  126 (433)
T ss_pred             ccchhhcCcchhhhhhccccCceEEEEehhh-------------------hhhhheeecccCceeeEEecc--cceEEec
Confidence            33344444444 5689999999999995432                   235678889999999999975  7799999


Q ss_pred             CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCe
Q 004207          575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  654 (768)
Q Consensus       575 ~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~  654 (768)
                      .|++|+.|.++. .++.++.+ ...+..|.-+..+..++||+.+  |.|||..... ++..+.-....|.++.|+|....
T Consensus       127 dDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETs  201 (433)
T KOG0268|consen  127 DDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN-PVSSMSWGADSISSVKFNPVETS  201 (433)
T ss_pred             CCcceeeeeccC-Ccceeeec-cccccccccccccccccccCce--eeecccccCC-ccceeecCCCceeEEecCCCcch
Confidence            999999999875 46677754 4567888877778889998765  8999997644 47777766788999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee---------------
Q 004207          655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK---------------  719 (768)
Q Consensus       655 lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~---------------  719 (768)
                      +|++|..|+.|.+||++.+.++..+...-....++|+|..-.++++..|..++.||++.......               
T Consensus       202 ILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs  281 (433)
T KOG0268|consen  202 ILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS  281 (433)
T ss_pred             heeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence            99999999999999999999988887777788899999666677888889999999876432211               


Q ss_pred             -----------cceeEEeecCCCceEEec--cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          720 -----------LQTLELWNMTENKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       720 -----------~~~I~iwd~~~~~~~~l~--~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                 .++|+||....+....+.  ..-..|.||.|+.|..||+|||+|+.|++|+
T Consensus       282 ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk  343 (433)
T KOG0268|consen  282 PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK  343 (433)
T ss_pred             CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence                       117777776665544322  1123599999999999999999999999996

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=7.8e-21  Score=215.84  Aligned_cols=224  Identities=15%  Similarity=0.216  Sum_probs=171.7

Q ss_pred             CcccccCccccCCCCEEEeecCCCcEEEeecCCCC--------------------------------CCCCccc------
Q 004207          493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA--------------------------------DPRDRVG------  534 (768)
Q Consensus       493 ~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~--------------------------------d~~~~~~------  534 (768)
                      +.-++-...+...++|||+|+.|+.|++|.+.+..                                .++....      
T Consensus       266 h~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s  345 (712)
T KOG0283|consen  266 HKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS  345 (712)
T ss_pred             cCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence            33444556677788999999999999999766510                                0000000      


Q ss_pred             ---cccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcC-CCC
Q 004207          535 ---RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLS  610 (768)
Q Consensus       535 ---~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fsp-dg~  610 (768)
                         ........+.-+++..+.+|.+.|.+|.||. ..+|++++.|++|++|++...+++.+|. |.+.|+||+|+| |.+
T Consensus       346 ~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDr  423 (712)
T KOG0283|consen  346 PCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDR  423 (712)
T ss_pred             ccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCC
Confidence               0000011233456788999999999999995 5589999999999999999999999885 999999999999 789


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---------
Q 004207          611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---------  681 (768)
Q Consensus       611 ~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---------  681 (768)
                      ||++|+-||.||||++...+  +..+..-..-|++++|.|+|.. +++|+.+|.+++|+.+..+....+..         
T Consensus       424 yFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk~-avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~  500 (712)
T KOG0283|consen  424 YFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGKG-AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ  500 (712)
T ss_pred             cEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCce-EEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc
Confidence            99999999999999998754  4445445588999999999884 45899999999999987766544431         


Q ss_pred             CCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCceEeeecc
Q 004207          682 QSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQ  721 (768)
Q Consensus       682 ~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~~~~~~  721 (768)
                      +..|+.+.|.|... .+++.+.|..|+|||.++...+..++
T Consensus       501 ~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK  541 (712)
T KOG0283|consen  501 GKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK  541 (712)
T ss_pred             CceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc
Confidence            33699999987543 59999999999999997665554443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.86  E-value=4.4e-19  Score=188.31  Aligned_cols=238  Identities=13%  Similarity=0.124  Sum_probs=178.0

Q ss_pred             CEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 004207          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE  585 (768)
Q Consensus       507 ~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~L-aSgs~Dg~I~VWdl~  585 (768)
                      .++++++.|+.+++|.....                   ..+..+..|. .+.+++|+|+++.+ ++++.++.|++||..
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~-------------------~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~   61 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATL-------------------EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLA   61 (300)
T ss_pred             cEEEEecCCCEEEEEECCCC-------------------ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECC
Confidence            56788999999999964322                   1233344443 36789999999976 566788999999999


Q ss_pred             CCeEEEEeccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-C
Q 004207          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S  663 (768)
Q Consensus       586 t~~~~~tl~~h~~~V~sl~fspdg~~LaTg-s~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-g  663 (768)
                      +++.+..+..+.. +..++|+|+++.++++ +.|+.|++||+++... +..+. +...+.+++|+|++..++ ++..+ .
T Consensus        62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~dg~~l~-~~~~~~~  137 (300)
T TIGR03866        62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKV-LAEIP-VGVEPEGMAVSPDGKIVV-NTSETTN  137 (300)
T ss_pred             CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE-EeEee-CCCCcceEEECCCCCEEE-EEecCCC
Confidence            9888877765544 5788999999877655 5689999999987653 44444 234578899999988655 44444 4


Q ss_pred             cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeec----------------------
Q 004207          664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKL----------------------  720 (768)
Q Consensus       664 ~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~----------------------  720 (768)
                      .+.+||.++++.+..+.....+..++|+|++.++++++ .++.|++||+++.+....+                      
T Consensus       138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d  217 (300)
T TIGR03866       138 MAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD  217 (300)
T ss_pred             eEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC
Confidence            57788999888877665556678899999999886655 5899999999876432110                      


Q ss_pred             -----------ceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEE-ECCCcEEEeC
Q 004207          721 -----------QTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK  768 (768)
Q Consensus       721 -----------~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSg-s~DG~V~IWD  768 (768)
                                 ..+.+||..+++......+...+.+++|+|++.+|+++ +.+|.|+|||
T Consensus       218 g~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d  277 (300)
T TIGR03866       218 GKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID  277 (300)
T ss_pred             CCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence                       15778888877766544555679999999999999886 4689999997

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=2.5e-19  Score=184.18  Aligned_cols=248  Identities=18%  Similarity=0.234  Sum_probs=186.2

Q ss_pred             ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCC----------------------------ccccccccCCCceeeEE
Q 004207          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRD----------------------------RVGRSAEVGKGFTFTEF  548 (768)
Q Consensus       497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~----------------------------~~~~~~~~~~~~~~~~~  548 (768)
                      +.+..+++.+.++.+.+.|.++++|....+...+.                            ..+|....   ..-+.+
T Consensus        17 i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl---~dNkyl   93 (311)
T KOG1446|consen   17 INSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL---HDNKYL   93 (311)
T ss_pred             eeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe---ecCceE
Confidence            33444566677777788888888886654421111                            11111111   122457


Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t  628 (768)
                      +.+.||...|++|+.+|-++.|++++.|++|++||++..++...+....  -..++|+|+|-++|++...+.|++||++.
T Consensus        94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~~~~IkLyD~Rs  171 (311)
T KOG1446|consen   94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANGSELIKLYDLRS  171 (311)
T ss_pred             EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecCCCeEEEEEecc
Confidence            8899999999999999988999999999999999999888887775433  34588999999999998888999999986


Q ss_pred             C-CeeEEEee---cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC----eeEEEEecCCCEEEEE
Q 004207          629 P-DYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG----ATQMRFQPRLGRILAA  700 (768)
Q Consensus       629 ~-~~~~~~~~---~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~----i~sl~fsp~~~~llag  700 (768)
                      - +.+..++.   +-....+.|.|+|+|+.+|+ +...+.+++.|.-+|....++..+..    ....+|.|++.+++++
T Consensus       172 ~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl-sT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~g  250 (311)
T KOG1446|consen  172 FDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL-STNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSG  250 (311)
T ss_pred             cCCCCceeEccCCCCccceeeeEEcCCCCEEEE-EeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEe
Confidence            4 33333333   33577999999999998775 55578999999999998888876322    2478899999999999


Q ss_pred             EcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          701 AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      +.||+|.+|+++++..+..+.               ..+...+.++.|+|.-.+++|++.  .+.+|
T Consensus       251 s~dg~i~vw~~~tg~~v~~~~---------------~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw  300 (311)
T KOG1446|consen  251 SDDGTIHVWNLETGKKVAVLR---------------GPNGGPVSCVRFNPRYAMFVSASS--NLVFW  300 (311)
T ss_pred             cCCCcEEEEEcCCCcEeeEec---------------CCCCCCccccccCCceeeeeecCc--eEEEE
Confidence            999999999998876654332               126788999999998777777654  56666

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.85  E-value=4.6e-20  Score=186.96  Aligned_cols=257  Identities=18%  Similarity=0.290  Sum_probs=200.2

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWC  583 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWd  583 (768)
                      .++++.+|+.|+.|.+|+.....+.+....-+    +.........-.+|.-.|.++.|-| |...|.+++.|.+++|||
T Consensus        55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~----k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWD  130 (397)
T KOG4283|consen   55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIA----KHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWD  130 (397)
T ss_pred             cceEEeecCCCccEEEEEeccccchhhcccee----heeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEee
Confidence            57899999999999999765443222111000    1111112233457889999999999 777999999999999999


Q ss_pred             CCCCeEEEEeccCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe
Q 004207          584 TESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (768)
Q Consensus       584 l~t~~~~~tl~~h~~~V~sl~fspd---g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs  660 (768)
                      ..+......++ ..+.|++-+|+|-   ..++|+|..|-.|++.|+..+.+ ..++.+|...|.+|.|+|..+++|++|+
T Consensus       131 tnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-sH~LsGHr~~vlaV~Wsp~~e~vLatgs  208 (397)
T KOG4283|consen  131 TNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-SHTLSGHRDGVLAVEWSPSSEWVLATGS  208 (397)
T ss_pred             cccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-eeeeccccCceEEEEeccCceeEEEecC
Confidence            99988877775 4567999999983   44778888888999999999887 8999999999999999999999999999


Q ss_pred             CCCcEEEEECCCC-eeEEEEec---------------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc---
Q 004207          661 NNSEIRYWSINNG-SCAGVFKC---------------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ---  721 (768)
Q Consensus       661 ~Dg~I~iWDl~sg-~~i~~~~~---------------~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~---  721 (768)
                      .||.|++||++.. .|..++..               .+.+..++|..++.++++++.|..+++|+...+.......   
T Consensus       209 aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~  288 (397)
T KOG4283|consen  209 ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPI  288 (397)
T ss_pred             CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccc
Confidence            9999999999864 44444432               3457889999999999999999999999997764321110   


Q ss_pred             ---------------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          722 ---------------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       722 ---------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                                                 .+.++++-++..+ .+..|-..|.|.++-|+-..+.+|+.|+.|..|
T Consensus       289 ~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w  362 (397)
T KOG4283|consen  289 IHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMW  362 (397)
T ss_pred             cccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccc
Confidence                                       4455555554443 466787789999999988889999999999888

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.85  E-value=1.8e-20  Score=207.97  Aligned_cols=220  Identities=19%  Similarity=0.357  Sum_probs=186.3

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEE-EEEcC-CCCEEEEEeCCCcEEEEE
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES-CHFSP-DGKLLATGGHDKKAVLWC  583 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~s-l~fSp-dg~~LaSgs~Dg~I~VWd  583 (768)
                      +..+.++|.|+++++|.-                 .+..+.+...+.+|.+-|.+ ++|-+ ++..|++|+.|++|.+|.
T Consensus        25 ~~~i~s~sRd~t~~vw~~-----------------~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~   87 (745)
T KOG0301|consen   25 GVCIISGSRDGTVKVWAK-----------------KGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK   87 (745)
T ss_pred             CeEEeecCCCCceeeeec-----------------cCcccccceecccCcceeeccceeccccCcceEeecccceEEEEe
Confidence            346889999999999933                 23345556677888888887 88876 555699999999999999


Q ss_pred             CCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC
Q 004207          584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (768)
Q Consensus       584 l~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg  663 (768)
                      +....++.++++|...|+|+....++. +++||+|.+++||-...   +...+.+|...|+++.+.|++  .++||+.|.
T Consensus        88 ~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~--~~vTgsaDK  161 (745)
T KOG0301|consen   88 LSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN--TYVTGSADK  161 (745)
T ss_pred             cCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC--cEEeccCcc
Confidence            999999999999999999999887776 99999999999998764   245589999999999999986  577999999


Q ss_pred             cEEEEECCCCeeEEEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCC
Q 004207          664 EIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKL  742 (768)
Q Consensus       664 ~I~iWDl~sg~~i~~~~~~-~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~  742 (768)
                      +|++|.-  ++++++|.+| ..|..+++-++ ..+++++.||.|+.|++. +.+                +.++.+|.+.
T Consensus       162 tIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~~-ge~----------------l~~~~ghtn~  221 (745)
T KOG0301|consen  162 TIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDLD-GEV----------------LLEMHGHTNF  221 (745)
T ss_pred             eeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEecc-Cce----------------eeeeeccceE
Confidence            9999976  7888888864 45889999987 458899999999999883 333                3355699999


Q ss_pred             eeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          743 VSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       743 I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |++++...++..|+|+++|++++||+
T Consensus       222 vYsis~~~~~~~Ivs~gEDrtlriW~  247 (745)
T KOG0301|consen  222 VYSISMALSDGLIVSTGEDRTLRIWK  247 (745)
T ss_pred             EEEEEecCCCCeEEEecCCceEEEee
Confidence            99999888889999999999999996

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=4.4e-19  Score=173.85  Aligned_cols=256  Identities=20%  Similarity=0.256  Sum_probs=199.2

Q ss_pred             eEEEEecCCCCcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEE
Q 004207          483 SLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCH  562 (768)
Q Consensus       483 ~~l~~~~~~~~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~  562 (768)
                      +...+.....+.-.+......+.+.+|++||.|.+|++.....+..  ..        .+    .-..+.-|.+.|..++
T Consensus        78 p~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~--~~--------~g----~dle~nmhdgtirdl~  143 (350)
T KOG0641|consen   78 PSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTC--NA--------TG----HDLEFNMHDGTIRDLA  143 (350)
T ss_pred             CeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccc--cc--------cC----cceeeeecCCceeeeE
Confidence            3455555555555555556667889999999999999874433210  01        11    1234568999999999


Q ss_pred             EcCC----CCEEEEEe-CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee
Q 004207          563 FSPD----GKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (768)
Q Consensus       563 fSpd----g~~LaSgs-~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~  637 (768)
                      |-.+    +.+|++++ .|..|++-|..++.....+.+|++.|.++ ++-++-.|++|+.|.+||+||++-+.+ +.++.
T Consensus       144 fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~-v~~l~  221 (350)
T KOG0641|consen  144 FLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSC-VNTLD  221 (350)
T ss_pred             EecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccce-eeecc
Confidence            9643    45677764 46778888999999999999999999887 444588999999999999999987654 44332


Q ss_pred             c--C-----CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 004207          638 G--H-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISIL  709 (768)
Q Consensus       638 ~--h-----~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~Iw  709 (768)
                      .  |     .+.|.+++..|.|+ +|++|-.|....+||++.+..+..+.. ...|.++.|+|...|+++++.|..|++-
T Consensus       222 ~~~~~~glessavaav~vdpsgr-ll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~iklt  300 (350)
T KOG0641|consen  222 NDFHDGGLESSAVAAVAVDPSGR-LLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLT  300 (350)
T ss_pred             CcccCCCcccceeEEEEECCCcc-eeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEe
Confidence            1  2     36799999999976 888999999999999999999988764 5679999999999999999999999999


Q ss_pred             ECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          710 DVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       710 D~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      |+..... +.           -.++....|+..+..+.|+|..--|++.+.|.++.+|
T Consensus       301 dlqgdla-~e-----------l~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlw  346 (350)
T KOG0641|consen  301 DLQGDLA-HE-----------LPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLW  346 (350)
T ss_pred             ecccchh-hc-----------CceEEEEeccCceEEEEecCccceeeeccCcceEEEe
Confidence            9876321 11           1234556799999999999999899999999999999

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.85  E-value=4.4e-20  Score=197.10  Aligned_cols=196  Identities=22%  Similarity=0.390  Sum_probs=163.1

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl  584 (768)
                      .-.+++|+.|+.|++|.......            .+........+.+|.+.|..++|++ +..+|++++.|+.+.|||+
T Consensus       190 ~g~Lls~~~d~~i~lwdi~~~~~------------~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~  257 (422)
T KOG0264|consen  190 EGTLLSGSDDHTICLWDINAESK------------EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDT  257 (422)
T ss_pred             ceeEeeccCCCcEEEEecccccc------------CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEc
Confidence            45678899999999996654421            1233456678899999999999999 5668999999999999999


Q ss_pred             C--CCeEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeC
Q 004207          585 E--SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (768)
Q Consensus       585 ~--t~~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~  661 (768)
                      +  +.++.....+|.+.|.|++|+| ++.+|||||.|++|++||+++...++.++.+|...|.+|.|+|....+|++++.
T Consensus       258 R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~  337 (422)
T KOG0264|consen  258 RSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT  337 (422)
T ss_pred             CCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc
Confidence            9  5667778889999999999999 577899999999999999999888899999999999999999999999999999


Q ss_pred             CCcEEEEECCCCee------------EEEEec---CCCeeEEEEecCCCE-EEEEEcCCeEEEEECCC
Q 004207          662 NSEIRYWSINNGSC------------AGVFKC---QSGATQMRFQPRLGR-ILAAAIENYISILDVET  713 (768)
Q Consensus       662 Dg~I~iWDl~sg~~------------i~~~~~---~~~i~sl~fsp~~~~-llags~Dg~I~IwD~~t  713 (768)
                      |+.+.|||+..-..            ...|.+   ...|..+.|+|+..+ |++++.|+.+.||.+..
T Consensus       338 D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  338 DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             CCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            99999999964211            112322   345888999999887 44567889999998865

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.2e-19  Score=206.89  Aligned_cols=235  Identities=17%  Similarity=0.284  Sum_probs=192.3

Q ss_pred             ccCccccCCCCEEEeecCCCcEEEeecCCC-CCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 004207          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDD-ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH  575 (768)
Q Consensus       497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~  575 (768)
                      ...+.+++.+.+|.+++.|+.|++|....+ .++                   .++.-|...|.+|+.  ++.+|++|+.
T Consensus        16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-------------------~ti~~~g~~v~~ia~--~s~~f~~~s~   74 (933)
T KOG1274|consen   16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-------------------ETIDISGELVSSIAC--YSNHFLTGSE   74 (933)
T ss_pred             eEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-------------------chhhccCceeEEEee--cccceEEeec
Confidence            445566777889999999999999954433 111                   111126667888877  5669999999


Q ss_pred             CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeE
Q 004207          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL  655 (768)
Q Consensus       576 Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~l  655 (768)
                      +++|.+|...+++.-..+...+-++.+++|+-+|+++|.||.|-.|++-++.+... ...+.+|.++|.+|.|+|.++ +
T Consensus        75 ~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~-~~~lrgh~apVl~l~~~p~~~-f  152 (933)
T KOG1274|consen   75 QNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ-EKVLRGHDAPVLQLSYDPKGN-F  152 (933)
T ss_pred             cceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch-heeecccCCceeeeeEcCCCC-E
Confidence            99999999988876666666678899999999999999999999999999988765 788999999999999999976 7


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEec---------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEe
Q 004207          656 LCSCDNNSEIRYWSINNGSCAGVFKC---------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW  726 (768)
Q Consensus       656 LaSgs~Dg~I~iWDl~sg~~i~~~~~---------~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iw  726 (768)
                      ||+.+.||.|+|||+.++.+..++..         ...+..++|+|+++.+++.+.|+.|.+|+..+......+.     
T Consensus       153 LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr-----  227 (933)
T KOG1274|consen  153 LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR-----  227 (933)
T ss_pred             EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec-----
Confidence            77888899999999999888776653         2235678999999999999999999999988865543221     


Q ss_pred             ecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       727 d~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                               ...|...+.++.|+|+|.|||+++.||.|.|||
T Consensus       228 ---------~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn  260 (933)
T KOG1274|consen  228 ---------DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWN  260 (933)
T ss_pred             ---------ccccccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence                     123445599999999999999999999999997

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.85  E-value=5.7e-20  Score=210.55  Aligned_cols=206  Identities=24%  Similarity=0.463  Sum_probs=184.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE-eccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q 004207          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~t-l~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~  631 (768)
                      .|...|.|..|+  ..++++++.|.+|++||..++..+.. +.+|.+.|++++|...+.+|++|+.|.+++|||+.++.+
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C  283 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC  283 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence            356778999997  67899999999999999999998888 999999999999988788999999999999999998876


Q ss_pred             eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 004207          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILD  710 (768)
Q Consensus       632 ~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD  710 (768)
                       ..++.+|.+.|.++...+   .++++|+.|.+|++|++.++.++..+. +...|.++.++  +.++++|+.|++|.+||
T Consensus       284 -~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~  357 (537)
T KOG0274|consen  284 -THSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD  357 (537)
T ss_pred             -EEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence             899999999999998874   477789999999999999999999999 67889999988  67999999999999999


Q ss_pred             CCCceEeeecc------------------------eeEEeecCCC-ce-EEeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 004207          711 VETQVCRLKLQ------------------------TLELWNMTEN-KT-LTLSAHDKLVSSLAASTVNGMVASASHDKCV  764 (768)
Q Consensus       711 ~~t~~~~~~~~------------------------~I~iwd~~~~-~~-~~l~~H~~~I~sla~spdg~~LaSgs~DG~V  764 (768)
                      +.++++...+.                        .|++||+.+. ++ .++.+|.+.|..+.+.  +.+|++++.|++|
T Consensus       358 ~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~aD~~I  435 (537)
T KOG0274|consen  358 PRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSSADGTI  435 (537)
T ss_pred             hhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc--cceeEeccccccE
Confidence            99988877654                        6999999998 44 4788999988777765  7899999999999


Q ss_pred             EEeC
Q 004207          765 KIWK  768 (768)
Q Consensus       765 ~IWD  768 (768)
                      ++||
T Consensus       436 k~WD  439 (537)
T KOG0274|consen  436 KLWD  439 (537)
T ss_pred             EEee
Confidence            9997

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=1.3e-19  Score=185.33  Aligned_cols=208  Identities=19%  Similarity=0.315  Sum_probs=167.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 004207          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~  633 (768)
                      ..+.|.++.|+|.+..|+++++||.+++||+........+. |..++.+++|.++ ..+++|+.||.|+++|+.++.  .
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~--~   87 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN--E   87 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCCc--c
Confidence            35679999999999999999999999999999876655554 8899999999974 679999999999999999876  3


Q ss_pred             EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       634 ~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                      ..+..|..+|.||.+.+... .+++|+.|++|++||.+...++..+.....|.++...  ++.|++|+.|..|.+||+++
T Consensus        88 ~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn  164 (323)
T KOG1036|consen   88 DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN  164 (323)
T ss_pred             eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence            56667999999999997654 6669999999999999987777777777778777665  55899999999999999987


Q ss_pred             ceEeeecc-----------------------------eeEEeecC---CCceEEeccCCC---------CeeEEEEeCCC
Q 004207          714 QVCRLKLQ-----------------------------TLELWNMT---ENKTLTLSAHDK---------LVSSLAASTVN  752 (768)
Q Consensus       714 ~~~~~~~~-----------------------------~I~iwd~~---~~~~~~l~~H~~---------~I~sla~spdg  752 (768)
                      ........                             .++.+|..   ..+...+..|..         +|++|+|+|-.
T Consensus       165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~  244 (323)
T KOG1036|consen  165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH  244 (323)
T ss_pred             ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence            54322110                             33333333   123335666643         69999999999


Q ss_pred             CEEEEEECCCcEEEeC
Q 004207          753 GMVASASHDKCVKIWK  768 (768)
Q Consensus       753 ~~LaSgs~DG~V~IWD  768 (768)
                      ..||||+.||.|.+||
T Consensus       245 ~tfaTgGsDG~V~~Wd  260 (323)
T KOG1036|consen  245 GTFATGGSDGIVNIWD  260 (323)
T ss_pred             ceEEecCCCceEEEcc
Confidence            9999999999999997

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.84  E-value=3.6e-21  Score=202.75  Aligned_cols=216  Identities=21%  Similarity=0.354  Sum_probs=181.5

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl  626 (768)
                      ..+..|.+.|..+.|-++...|++|+.|..|++|++...+  .+.++.+..+.|+++.|.++++++++++.|+.+++|++
T Consensus       169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv  248 (459)
T KOG0288|consen  169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV  248 (459)
T ss_pred             hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence            4467899999999999998999999999999999987766  66788888899999999999999999999999999999


Q ss_pred             CCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeE
Q 004207          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYI  706 (768)
Q Consensus       627 ~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I  706 (768)
                      +.... ..++.+|...|+++.|.-.... +++|+.|.+|++||+....|.+++-....+..|+.++  ..++++-.|++|
T Consensus       249 d~~r~-~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~--~~~~SgH~Dkkv  324 (459)
T KOG0288|consen  249 DSLRL-RHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI--SDVISGHFDKKV  324 (459)
T ss_pred             cchhh-hhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEecc--eeeeecccccce
Confidence            98664 7899999999999999876443 7799999999999999999998887777777777763  467888899999


Q ss_pred             EEEECCCceEeeecc------------------------eeEEeecCCCceEE-ecc----CCCCeeEEEEeCCCCEEEE
Q 004207          707 SILDVETQVCRLKLQ------------------------TLELWNMTENKTLT-LSA----HDKLVSSLAASTVNGMVAS  757 (768)
Q Consensus       707 ~IwD~~t~~~~~~~~------------------------~I~iwd~~~~~~~~-l~~----H~~~I~sla~spdg~~LaS  757 (768)
                      ++||.++..+.....                        ++.+.|..+..+.. +.+    .....+.+.|||++.|+++
T Consensus       325 RfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaA  404 (459)
T KOG0288|consen  325 RFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAA  404 (459)
T ss_pred             EEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeee
Confidence            999998876655443                        56666766655542 211    1223889999999999999


Q ss_pred             EECCCcEEEeC
Q 004207          758 ASHDKCVKIWK  768 (768)
Q Consensus       758 gs~DG~V~IWD  768 (768)
                      ||.||.|+||+
T Consensus       405 GS~dgsv~iW~  415 (459)
T KOG0288|consen  405 GSADGSVYIWS  415 (459)
T ss_pred             ccCCCcEEEEE
Confidence            99999999996

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.84  E-value=5.4e-20  Score=198.00  Aligned_cols=209  Identities=19%  Similarity=0.290  Sum_probs=167.9

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 004207          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTL-EEHTQWITDVRFSPSLSRLATSSADRTV  621 (768)
Q Consensus       547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~----~~~tl-~~h~~~V~sl~fspdg~~LaTgs~DgtI  621 (768)
                      ....+++|+..|.++++.|.|..|++|+.|.+|++||+....    ..+.+ ......|.++.|++.+..|++.+....+
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            345678999999999999999999999999999999986532    12222 2234569999999999999999989999


Q ss_pred             EEEECCCCCee-----------EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe-eEEEEec------CC
Q 004207          622 RVWDTENPDYS-----------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC------QS  683 (768)
Q Consensus       622 rVWDl~t~~~~-----------~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~-~i~~~~~------~~  683 (768)
                      +|+|-+.....           +...++|...++|.+|+|..+..|++|+.||+++|||+.+.+ ...+|+.      ..
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            99997643321           123468999999999999999999999999999999998643 3444443      23


Q ss_pred             CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCC--CeeEEEEeCCCCEEEEEECC
Q 004207          684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK--LVSSLAASTVNGMVASASHD  761 (768)
Q Consensus       684 ~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~--~I~sla~spdg~~LaSgs~D  761 (768)
                      .++.++|++++..|++|+.||.|-+|+.........             ...-.+|..  .|+||.|+++|++|++-|.|
T Consensus       319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~-------------~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D  385 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV-------------MKVKDAHLPGQDITSISFSYDGNYLLSRGFD  385 (641)
T ss_pred             CceeeecCCCcchhhhcccCCceeeeecCCcccccc-------------eEeeeccCCCCceeEEEeccccchhhhccCC
Confidence            478999999999999999999999999865432211             112347877  89999999999999999999


Q ss_pred             CcEEEeC
Q 004207          762 KCVKIWK  768 (768)
Q Consensus       762 G~V~IWD  768 (768)
                      ++++|||
T Consensus       386 ~tLKvWD  392 (641)
T KOG0772|consen  386 DTLKVWD  392 (641)
T ss_pred             Cceeeee
Confidence            9999997

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=2.2e-20  Score=190.59  Aligned_cols=207  Identities=20%  Similarity=0.343  Sum_probs=177.2

Q ss_pred             eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (768)
Q Consensus       545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVW  624 (768)
                      +..++.+.+|.+.|+.++.......+.+++.|.+.+||.+++++|+.++.+|.+.|++|+|++.+.+++|++.|++.+||
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW  217 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence            34566778999999999988777789999999999999999999999999999999999999999999999999999999


Q ss_pred             ECC------C---------------------------------CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcE
Q 004207          625 DTE------N---------------------------------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (768)
Q Consensus       625 Dl~------t---------------------------------~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I  665 (768)
                      ...      .                                 -..++..+.+|.+.|.+..|...|.. +++++.|.+.
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q-~vTaSWDRTA  296 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ-MVTASWDRTA  296 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce-eeeeeccccc
Confidence            721      0                                 01134567899999999999988774 5599999999


Q ss_pred             EEEECCCCeeEEEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCee
Q 004207          666 RYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVS  744 (768)
Q Consensus       666 ~iWDl~sg~~i~~~~~~-~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~  744 (768)
                      .+||+++++.+..+.++ ...+.++-+|....+++.+.|.+.++||++....               .+..|.+|.+.|+
T Consensus       297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~---------------sV~VFQGHtdtVT  361 (481)
T KOG0300|consen  297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ---------------SVAVFQGHTDTVT  361 (481)
T ss_pred             eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcc---------------eeeeeccccccee
Confidence            99999999999998864 4578888999988899999999999999984321               1235679999999


Q ss_pred             EEEEeCCCCEEEEEECCCcEEEeC
Q 004207          745 SLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       745 sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ++.|..+. .+++|++|.+|+|||
T Consensus       362 S~vF~~dd-~vVSgSDDrTvKvWd  384 (481)
T KOG0300|consen  362 SVVFNTDD-RVVSGSDDRTVKVWD  384 (481)
T ss_pred             EEEEecCC-ceeecCCCceEEEee
Confidence            99998754 588999999999997

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.84  E-value=6.5e-20  Score=191.39  Aligned_cols=205  Identities=20%  Similarity=0.380  Sum_probs=171.7

Q ss_pred             ecCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCC----------------CeEEEEeccCCCCEEEEEEcCC-CCE
Q 004207          551 IPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTES----------------FTVKSTLEEHTQWITDVRFSPS-LSR  611 (768)
Q Consensus       551 l~~H~~~I~sl~fSpdg--~~LaSgs~Dg~I~VWdl~t----------------~~~~~tl~~h~~~V~sl~fspd-g~~  611 (768)
                      ..+|.+.|..+..++-+  .+.++-+..|.|.||++..                .+++.++.+|...=+.|+|||- ...
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            34677778888877754  4667778899999998742                4567888999999999999993 345


Q ss_pred             EEEEeCCCcEEEEECCCCCeeE--EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC---eeEEEEecCCCee
Q 004207          612 LATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKCQSGAT  686 (768)
Q Consensus       612 LaTgs~DgtIrVWDl~t~~~~~--~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg---~~i~~~~~~~~i~  686 (768)
                      |+||..-+.|++|...++...+  ..+.+|...|-.|+|+|..+.+|++|+.||+|+|||+|.+   .++.+-.+.+.|.
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN  306 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN  306 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence            8899888999999998876543  5677899999999999999999999999999999999998   5666655678899


Q ss_pred             EEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECCCcEE
Q 004207          687 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVK  765 (768)
Q Consensus       687 sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~  765 (768)
                      .+.|+.+...|++|+.||+++|||++..+..             ..+..+.-|..+|++|.|+|.. ..|+++|.|..|.
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~-------------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qit  373 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFKSG-------------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQIT  373 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhccCC-------------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEE
Confidence            9999999888999999999999999885432             2234677899999999999865 6888999999999


Q ss_pred             EeC
Q 004207          766 IWK  768 (768)
Q Consensus       766 IWD  768 (768)
                      |||
T Consensus       374 iWD  376 (440)
T KOG0302|consen  374 IWD  376 (440)
T ss_pred             EEE
Confidence            997

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=1.3e-19  Score=199.68  Aligned_cols=260  Identities=18%  Similarity=0.289  Sum_probs=204.7

Q ss_pred             cccCCCCCceEEEEecCCCC--------------cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCcccccccc
Q 004207          474 LQHNGASSKSLLMFGSDGMG--------------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV  539 (768)
Q Consensus       474 l~~s~s~~~~~l~~~~~~~~--------------~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~  539 (768)
                      ..+.++++..+..|......              ...+....+..+++.+.++|.|.+|++|....+.            
T Consensus        39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~------------  106 (735)
T KOG0308|consen   39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN------------  106 (735)
T ss_pred             eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc------------
Confidence            45778889999999876432              2233355667888899999999999999665431            


Q ss_pred             CCCceeeEEEEecCCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEECCCCeE--E--------EEec-cCCCCEEEEEEcC
Q 004207          540 GKGFTFTEFQLIPASTSKVESCHF-SPDGKLLATGGHDKKAVLWCTESFTV--K--------STLE-EHTQWITDVRFSP  607 (768)
Q Consensus       540 ~~~~~~~~~~~l~~H~~~I~sl~f-Spdg~~LaSgs~Dg~I~VWdl~t~~~--~--------~tl~-~h~~~V~sl~fsp  607 (768)
                           -.++.+++.|++.|.|+++ .++..++|+||-|+.|.|||+.++..  +        ..+. ++...|++++.++
T Consensus       107 -----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~  181 (735)
T KOG0308|consen  107 -----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ  181 (735)
T ss_pred             -----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence                 1346778899999999999 77888999999999999999997622  2        2223 7888999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCee
Q 004207          608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGAT  686 (768)
Q Consensus       608 dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~  686 (768)
                      .+..|++|+..+.|++||.++.+. +..+.+|...|.++..+++|..+| +++.||+|++||+...+|+.++.. ...|.
T Consensus       182 t~t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgqQrCl~T~~vH~e~VW  259 (735)
T KOG0308|consen  182 TGTIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQQRCLATYIVHKEGVW  259 (735)
T ss_pred             cceEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeeccccceeeeEEeccCceE
Confidence            999999999999999999999876 666779999999999999998666 888999999999999999998875 45688


Q ss_pred             EEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207          687 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  766 (768)
Q Consensus       687 sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~I  766 (768)
                      ++..+|+-.++++|+.|+.|+.-|+++....                ..+...+.+|..+..+....-+.+++.|+.|+-
T Consensus       260 aL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~----------------tlick~daPv~~l~~~~~~~~~WvtTtds~I~r  323 (735)
T KOG0308|consen  260 ALQSSPSFTHVYSGGRDGNIYRTDLRNPAKS----------------TLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKR  323 (735)
T ss_pred             EEeeCCCcceEEecCCCCcEEecccCCchhh----------------eEeecCCCchhhhhhccccCCceeeecccccee
Confidence            9999999999999999999999998874211                111123334555555544444466667777777


Q ss_pred             eC
Q 004207          767 WK  768 (768)
Q Consensus       767 WD  768 (768)
                      |.
T Consensus       324 W~  325 (735)
T KOG0308|consen  324 WK  325 (735)
T ss_pred             cC
Confidence            63

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1.1e-18  Score=178.39  Aligned_cols=255  Identities=18%  Similarity=0.324  Sum_probs=185.8

Q ss_pred             cCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC--CCCEEEEEeC
Q 004207          498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGH  575 (768)
Q Consensus       498 ~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp--dg~~LaSgs~  575 (768)
                      ....++.+++.+|++|.|.+|++|.+.++               ..++......+.|.+.|..|.|.+  -|..+|+|+.
T Consensus        17 hdVs~D~~GRRmAtCSsDq~vkI~d~~~~---------------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~   81 (361)
T KOG2445|consen   17 HDVSFDFYGRRMATCSSDQTVKIWDSTSD---------------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY   81 (361)
T ss_pred             eeeeecccCceeeeccCCCcEEEEeccCC---------------CCceEEeeeEEecCCcEEEEEecCccccceEEEEec
Confidence            34445668899999999999999976332               345666777889999999999976  5889999999


Q ss_pred             CCcEEEEECC---------CCeEEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCee------------
Q 004207          576 DKKAVLWCTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYS------------  632 (768)
Q Consensus       576 Dg~I~VWdl~---------t~~~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVWDl~t~~~~------------  632 (768)
                      |++|.||.-.         ......++......|++|.|.|.  |-.||+++.||+||||+.-..-..            
T Consensus        82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~  161 (361)
T KOG2445|consen   82 DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV  161 (361)
T ss_pred             CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence            9999999642         12234566777889999999995  778999999999999997653321            


Q ss_pred             EEEeecCCCCeEEEEEeCCC--CeEEEEEeCC-----CcEEEEECCCC--eeE--EEEe-cCCCeeEEEEecCCC----E
Q 004207          633 LRTFTGHSTTVMSLDFHPSK--EDLLCSCDNN-----SEIRYWSINNG--SCA--GVFK-CQSGATQMRFQPRLG----R  696 (768)
Q Consensus       633 ~~~~~~h~~~V~slafsp~g--~~lLaSgs~D-----g~I~iWDl~sg--~~i--~~~~-~~~~i~sl~fsp~~~----~  696 (768)
                      +.....+..+..||.|+|..  ..+|++|+.+     +.++||.....  +..  .++. +..+|+.++|.|+-+    .
T Consensus       162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~  241 (361)
T KOG2445|consen  162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHL  241 (361)
T ss_pred             cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceee
Confidence            11122466778999999752  3467777754     47888876432  222  2222 367899999999754    3


Q ss_pred             EEEEEcCCeEEEEECCCceEeeecc----eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          697 ILAAAIENYISILDVETQVCRLKLQ----TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       697 llags~Dg~I~IwD~~t~~~~~~~~----~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |++++.|| |+||.+........-.    ...+.++.-.++..+..|.+.|..+.|+-.|..|++.|.||+|++|+
T Consensus       242 lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  242 LAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK  316 (361)
T ss_pred             EEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence            77888888 9999997532111000    11112222233445779999999999999999999999999999995

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=1.1e-19  Score=193.22  Aligned_cols=251  Identities=17%  Similarity=0.247  Sum_probs=186.4

Q ss_pred             cCCCCEEEeecCCCcEEEeec--CCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcE
Q 004207          503 TDMDRFVDDGSLDDNVESFLS--PDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKA  579 (768)
Q Consensus       503 ~~~~~~latGS~D~~v~~w~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I  579 (768)
                      .+.++|+|.|..|..|.+|+.  .+...+...++....-.+...-+.-..-.+|++.|.+++|+..- +.||+||.|.+|
T Consensus       189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV  268 (463)
T KOG0270|consen  189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV  268 (463)
T ss_pred             CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence            456789999999999999943  23333322233221111111111122345799999999998854 479999999999


Q ss_pred             EEEECCCCeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207          580 VLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (768)
Q Consensus       580 ~VWdl~t~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS  658 (768)
                      ++||+.++++..++..|.+.|.++.|+|. ..+|++|+.|++|.+.|.+.....-..+. ..+.|-.++|+|.....+++
T Consensus       269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~  347 (463)
T KOG0270|consen  269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFV  347 (463)
T ss_pred             EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEE
Confidence            99999999999999999999999999995 77999999999999999996544333343 35789999999999989999


Q ss_pred             EeCCCcEEEEECCC-CeeEEEEec-CCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEE
Q 004207          659 CDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLT  735 (768)
Q Consensus       659 gs~Dg~I~iWDl~s-g~~i~~~~~-~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~  735 (768)
                      +..||+|+-+|+|+ ++++.++.. ..+|.++++++... .+++++.|+.|++|++..........    -++      .
T Consensus       348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~----~~~------~  417 (463)
T KOG0270|consen  348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE----HSF------K  417 (463)
T ss_pred             ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc----ccc------c
Confidence            99999999999997 488888875 56799999987654 47778899999999986643321100    000      0


Q ss_pred             eccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 004207          736 LSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK  768 (768)
Q Consensus       736 l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IWD  768 (768)
                          -+...|.++.|+- .+++.|+..+.++|||
T Consensus       418 ----~~rl~c~~~~~~~a~~la~GG~k~~~~vwd  447 (463)
T KOG0270|consen  418 ----LGRLHCFALDPDVAFTLAFGGEKAVLRVWD  447 (463)
T ss_pred             ----ccceeecccCCCcceEEEecCccceEEEee
Confidence                1125566777776 4677888888899997

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.83  E-value=1.7e-19  Score=180.65  Aligned_cols=201  Identities=18%  Similarity=0.301  Sum_probs=169.2

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004207          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD  625 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~--tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWD  625 (768)
                      +.+.+|...|.+|+|+.+|..|++|+.|+++.||+++..+...  ...+|.+.|-.++|+| ....|++++.|++|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            5567899999999999999999999999999999998775543  4478999999999988 467999999999999999


Q ss_pred             CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCe
Q 004207          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY  705 (768)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~  705 (768)
                      ++.+++...+.. ..+ =.-+.|+|+|.+ +++++.|..|.+.|.++.+.+........+..++|+-++..++....-|+
T Consensus        94 ~r~~k~~~~i~~-~~e-ni~i~wsp~g~~-~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~  170 (313)
T KOG1407|consen   94 IRSGKCTARIET-KGE-NINITWSPDGEY-IAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC  170 (313)
T ss_pred             eccCcEEEEeec-cCc-ceEEEEcCCCCE-EEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence            999887444443 233 345889999885 55788899999999999998888887788899999977777777777799


Q ss_pred             EEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          706 ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       706 I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |.|......+.                +..+.+|.....||.|+|+|+|||+|+.|-.|.+||
T Consensus       171 v~ILsypsLkp----------------v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD  217 (313)
T KOG1407|consen  171 VEILSYPSLKP----------------VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWD  217 (313)
T ss_pred             EEEEecccccc----------------ccccccCCcceEEEEECCCCceEeeccccceeeccC
Confidence            98887665433                335669999999999999999999999999999998

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.83  E-value=2.2e-19  Score=208.63  Aligned_cols=223  Identities=17%  Similarity=0.307  Sum_probs=182.6

Q ss_pred             ccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 004207          495 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG  574 (768)
Q Consensus       495 ~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs  574 (768)
                      -.+.++.+.+.+.++|+||.|..|.+|.... ......++..-.....+.|+.+..+++|...|..++|+|++.+||+++
T Consensus        70 ~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s  148 (942)
T KOG0973|consen   70 GSVNCVRFSPDGSYLASGSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS  148 (942)
T ss_pred             CceeEEEECCCCCeEeeccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec
Confidence            3445566677889999999999999996654 212222222223344567899999999999999999999999999999


Q ss_pred             CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe-----------------------
Q 004207          575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-----------------------  631 (768)
Q Consensus       575 ~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~-----------------------  631 (768)
                      .|++|.|||..+++.+.++.+|.+.|..+.|.|-|+|||+-+.|++|+||++.+...                       
T Consensus       149 ~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS  228 (942)
T KOG0973|consen  149 LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS  228 (942)
T ss_pred             ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC
Confidence            999999999999999999999999999999999999999999999999999642100                       


Q ss_pred             ----------------------------eEEEeecCCCCeEEEEEeCC--------CC--------eEEEEEeCCCcEEE
Q 004207          632 ----------------------------SLRTFTGHSTTVMSLDFHPS--------KE--------DLLCSCDNNSEIRY  667 (768)
Q Consensus       632 ----------------------------~~~~~~~h~~~V~slafsp~--------g~--------~lLaSgs~Dg~I~i  667 (768)
                                                  .-..+.||.+++.++.|+|.        |.        .++|+|+.|++|.|
T Consensus       229 PDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV  308 (942)
T KOG0973|consen  229 PDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV  308 (942)
T ss_pred             CCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence                                        01245689999999999982        11        27889999999999


Q ss_pred             EECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEee
Q 004207          668 WSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL  718 (768)
Q Consensus       668 WDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~  718 (768)
                      |.....+++.++..  ...|..++|+|+|-.|++++.||+|.++.++..+...
T Consensus       309 W~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~  361 (942)
T KOG0973|consen  309 WNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGV  361 (942)
T ss_pred             EecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCc
Confidence            99977777666543  6789999999999999999999999999998765443

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=5.3e-21  Score=212.68  Aligned_cols=204  Identities=26%  Similarity=0.480  Sum_probs=182.6

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (768)
Q Consensus       547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl  626 (768)
                      +.+.+..|...|.|+..-..++.+++|+.|..+.+|.+.....+..+.+|..+|.||.|+++..+|++|+.+|+|++||+
T Consensus        20 ~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl   99 (825)
T KOG0267|consen   20 DTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL   99 (825)
T ss_pred             cchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence            34556789999999998778899999999999999999888888889999999999999999999999999999999999


Q ss_pred             CCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-CCeeEEEEecCCCEEEEEEcCCe
Q 004207          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENY  705 (768)
Q Consensus       627 ~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-~~i~sl~fsp~~~~llags~Dg~  705 (768)
                      +..+. ++++.+|...+.+|+|+|-+. ++++|+.|+.+++||++...|++.+..+ ..+..+.|+|+|.+++.++.|..
T Consensus       100 eeAk~-vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t  177 (825)
T KOG0267|consen  100 EEAKI-VRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT  177 (825)
T ss_pred             hhhhh-hhhhhccccCcceeeeccceE-EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce
Confidence            98765 889999999999999999976 5589999999999999988888888864 34677899999999999999999


Q ss_pred             EEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          706 ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       706 I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +.|||+..++...                +|..|.+.|.++.|+|..-++++||.|++|++||
T Consensus       178 vki~d~~agk~~~----------------ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~d  224 (825)
T KOG0267|consen  178 VKIWDLTAGKLSK----------------EFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWD  224 (825)
T ss_pred             eeeeccccccccc----------------ccccccccccccccCchhhhhccCCCCceeeeec
Confidence            9999988766543                3448999999999999999999999999999997

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.5e-18  Score=185.18  Aligned_cols=253  Identities=15%  Similarity=0.237  Sum_probs=193.2

Q ss_pred             cccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC-EEEEEe
Q 004207          496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGG  574 (768)
Q Consensus       496 ~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~-~LaSgs  574 (768)
                      .+.+..+++...++.+++.|+++++|-....                 .-..+..+.-...+|.+++|.|+|. .+++++
T Consensus       215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk-----------------~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~  277 (514)
T KOG2055|consen  215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGK-----------------VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSG  277 (514)
T ss_pred             CceEEEecCCCceEEEecCCCcEEEEEecCc-----------------cChhheeeeeccCccceeeecCCCceEEEecc
Confidence            3445556667789999999999999954222                 2223455555677899999999999 899999


Q ss_pred             CCCcEEEEECCCCeEEE--EeccCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCC
Q 004207          575 HDKKAVLWCTESFTVKS--TLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS  651 (768)
Q Consensus       575 ~Dg~I~VWdl~t~~~~~--tl~~h~-~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~  651 (768)
                      ....++.||+.+.+...  .+.++. ..+.....++++++|+..+..|.|.+....+++. +.+++ -.+.|..++|+.+
T Consensus       278 rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-i~s~K-ieG~v~~~~fsSd  355 (514)
T KOG2055|consen  278 RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-ITSFK-IEGVVSDFTFSSD  355 (514)
T ss_pred             cceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-hheee-eccEEeeEEEecC
Confidence            99999999999876543  233333 3567788899999999999999999999988775 55555 4578999999999


Q ss_pred             CCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCe--eEEEEecCCCEEEEEEcCCeEEEEECCCceEe------eecc--
Q 004207          652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAIENYISILDVETQVCR------LKLQ--  721 (768)
Q Consensus       652 g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i--~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~------~~~~--  721 (768)
                      ++.++++| .+|.|.+||++...|++.+...+.|  +++|.++++.++++|+..|.|.|||..+....      ..+.  
T Consensus       356 sk~l~~~~-~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL  434 (514)
T KOG2055|consen  356 SKELLASG-GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL  434 (514)
T ss_pred             CcEEEEEc-CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh
Confidence            98777555 5889999999999999999876665  56777899999999999999999996543111      1110  


Q ss_pred             -------------------------eeEEeecCCCceEE-ec---cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 -------------------------TLELWNMTENKTLT-LS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 -------------------------~I~iwd~~~~~~~~-l~---~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                               .+++..+.+-.++. +.   ..-+.|+||+|+|.+.+||.|..+|.|.+|+
T Consensus       435 tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k  510 (514)
T KOG2055|consen  435 TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK  510 (514)
T ss_pred             heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence                                     45555555444432 11   2234699999999999999999999999995

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.82  E-value=9.9e-19  Score=195.28  Aligned_cols=224  Identities=18%  Similarity=0.276  Sum_probs=185.1

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      ...++++|+ .+.+++|+....                   ++++++..  +.|.|..|.|.++++++|...|.+.|||+
T Consensus       384 d~~~~~Sga-~~SikiWn~~t~-------------------kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl  441 (888)
T KOG0306|consen  384 DSILLASGA-GESIKIWNRDTL-------------------KCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDL  441 (888)
T ss_pred             CceeeeecC-CCcEEEEEccCc-------------------ceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEe
Confidence            344555554 467888854322                   34444433  37999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----CCe-e-E-----EEeecCCCCeEEEEEeCCC
Q 004207          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-----PDY-S-L-----RTFTGHSTTVMSLDFHPSK  652 (768)
Q Consensus       585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t-----~~~-~-~-----~~~~~h~~~V~slafsp~g  652 (768)
                      .+...+.++..|.+.|++++.+||++.++|||.|.+|++||..-     +.. . +     +++ .-...|.|+.++||+
T Consensus       442 aS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdg  520 (888)
T KOG0306|consen  442 ASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDG  520 (888)
T ss_pred             ehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCC
Confidence            99999999999999999999999999999999999999999741     111 0 1     112 235679999999998


Q ss_pred             CeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCC
Q 004207          653 EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTEN  731 (768)
Q Consensus       653 ~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~  731 (768)
                      . +||++--|.+|+||-+.+-+....+.+ .-+|.|+.++|++..+++|+.|..|+||-+.-+.|...            
T Consensus       521 k-~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS------------  587 (888)
T KOG0306|consen  521 K-LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS------------  587 (888)
T ss_pred             c-EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh------------
Confidence            7 677888899999999998887766665 56799999999999999999999999998887777543            


Q ss_pred             ceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          732 KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       732 ~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                          +.+|.+.|.+|.|.|...+|+++|.|+.|+-||
T Consensus       588 ----~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD  620 (888)
T KOG0306|consen  588 ----FFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD  620 (888)
T ss_pred             ----hhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence                449999999999999999999999999999997

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.82  E-value=5e-19  Score=184.80  Aligned_cols=252  Identities=19%  Similarity=0.294  Sum_probs=182.9

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWC  583 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWd  583 (768)
                      .+.+.++.+..|.|.+|.....-.....   .--......++++.++.+|.+.=+.|+||| ....|++|..-+.|++|.
T Consensus       164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~---~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~  240 (440)
T KOG0302|consen  164 NEVLCASWSENGRVQVWDLAPHLNALSE---PGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWE  240 (440)
T ss_pred             CcceeeeecccCcEEEEEchhhhhhhcC---ccccccccccCceEEecccCccceeeecccccccccccCccccceEeee
Confidence            4567788899999999954322110000   000112245678899999999999999999 233578888788899998


Q ss_pred             CCCCeEE---EEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-CeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207          584 TESFTVK---STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP-DYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (768)
Q Consensus       584 l~t~~~~---~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~-~~~~~~~~~h~~~V~slafsp~g~~lLaS  658 (768)
                      ..++.-.   .-+.+|+..|..++|+|. ...|++||.||+|+|||++.+ +......+.|.+.|..|.|+.... +|++
T Consensus       241 ~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLas  319 (440)
T KOG0302|consen  241 PSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLAS  319 (440)
T ss_pred             eccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeee
Confidence            8775432   345679999999999996 568999999999999999986 333445588999999999998866 8999


Q ss_pred             EeCCCcEEEEECCC---CeeEEEEec-CCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCceEeeecc--eeE-EeecCC
Q 004207          659 CDNNSEIRYWSINN---GSCAGVFKC-QSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQ--TLE-LWNMTE  730 (768)
Q Consensus       659 gs~Dg~I~iWDl~s---g~~i~~~~~-~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~~~~~~--~I~-iwd~~~  730 (768)
                      |+.||+++|||+|.   +.++..|+. ..+|+++.|+|... .|++++.|+.|.|||+....-.....  ... +-|+. 
T Consensus       320 G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlP-  398 (440)
T KOG0302|consen  320 GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLP-  398 (440)
T ss_pred             cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCC-
Confidence            99999999999986   556777774 67899999999755 47777899999999996543211000  000 11111 


Q ss_pred             CceEEeccC--CCCeeEEEEeCCC-CEEEEEECCCc
Q 004207          731 NKTLTLSAH--DKLVSSLAASTVN-GMVASASHDKC  763 (768)
Q Consensus       731 ~~~~~l~~H--~~~I~sla~spdg-~~LaSgs~DG~  763 (768)
                        ...+..|  ...|..|.|++.- .+|++.+.||.
T Consensus       399 --pQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  399 --PQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             --ceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence              1122234  4568899999865 68889888884

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.81  E-value=5.3e-19  Score=194.65  Aligned_cols=252  Identities=17%  Similarity=0.256  Sum_probs=183.6

Q ss_pred             cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (768)
Q Consensus       503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VW  582 (768)
                      ...+.+++.+..||.|.+|+.....      .+       .....++...+|...|..+.|.|....|++++.|.++++|
T Consensus        61 ~n~eHiLavadE~G~i~l~dt~~~~------fr-------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W  127 (720)
T KOG0321|consen   61 PNKEHILAVADEDGGIILFDTKSIV------FR-------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW  127 (720)
T ss_pred             CCccceEEEecCCCceeeecchhhh------cc-------hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeee
Confidence            4467889999999999999543221      11       1112245667999999999999966689999999999999


Q ss_pred             ECCCCeEEEE--eccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCe--------------------------eE
Q 004207          583 CTESFTVKST--LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY--------------------------SL  633 (768)
Q Consensus       583 dl~t~~~~~t--l~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~--------------------------~~  633 (768)
                      |+++.+++..  +.+|.+.|.+++|.|. ...|++|+.||.|.|||++-...                          .+
T Consensus       128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~  207 (720)
T KOG0321|consen  128 DVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI  207 (720)
T ss_pred             eeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence            9999998876  8999999999999995 56899999999999999873220                          01


Q ss_pred             EEeecCCCCeEE---EEEeCCCCeEEEEEeC-CCcEEEEECCCCeeEEEEe------c------CCCeeEEEEecCCCEE
Q 004207          634 RTFTGHSTTVMS---LDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFK------C------QSGATQMRFQPRLGRI  697 (768)
Q Consensus       634 ~~~~~h~~~V~s---lafsp~g~~lLaSgs~-Dg~I~iWDl~sg~~i~~~~------~------~~~i~sl~fsp~~~~l  697 (768)
                      .....+...|.+   +.+.-|.. .|++++. |+.|+|||++...+.....      .      ..++.++..+..|.++
T Consensus       208 ~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L  286 (720)
T KOG0321|consen  208 RKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL  286 (720)
T ss_pred             cccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence            122334444444   33444544 4556665 9999999999754432221      1      2347788888889999


Q ss_pred             EEEEcCCeEEEEECCCceEeee----------cc-------------------eeEEeecCCCc--eEEeccCCCCeeEE
Q 004207          698 LAAAIENYISILDVETQVCRLK----------LQ-------------------TLELWNMTENK--TLTLSAHDKLVSSL  746 (768)
Q Consensus       698 lags~Dg~I~IwD~~t~~~~~~----------~~-------------------~I~iwd~~~~~--~~~l~~H~~~I~sl  746 (768)
                      ++.+.|+.|++|++.+......          +.                   ...+|.+....  ...+.+|.-.|++|
T Consensus       287 ~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V  366 (720)
T KOG0321|consen  287 FASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTV  366 (720)
T ss_pred             EEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEE
Confidence            9999999999999976422111          00                   55666655433  33567899999999


Q ss_pred             EEeCCC-CEEEEEECCCcEEEeC
Q 004207          747 AASTVN-GMVASASHDKCVKIWK  768 (768)
Q Consensus       747 a~spdg-~~LaSgs~DG~V~IWD  768 (768)
                      +|.|.. .-++++++|-.++||+
T Consensus       367 ~w~pS~~t~v~TcSdD~~~kiW~  389 (720)
T KOG0321|consen  367 RWLPSATTPVATCSDDFRVKIWR  389 (720)
T ss_pred             eeccccCCCceeeccCcceEEEe
Confidence            998754 4577779999999996

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=1.2e-19  Score=180.05  Aligned_cols=203  Identities=21%  Similarity=0.324  Sum_probs=166.1

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eEEEEeccCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 004207          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD  625 (768)
Q Consensus       551 l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~---~~~~tl~~h~~~V~sl~fsp--dg~~LaTgs~DgtIrVWD  625 (768)
                      -..|.+.|..+...--|+.||||+.|++|+|+.++..   +++.++.+|.++|+.++|..  -|.+||+|++||.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            3578889999888888999999999999999998763   57889999999999999965  599999999999999999


Q ss_pred             CCCCCe-eEEEeecCCCCeEEEEEeCCCC-eEEEEEeCCCcEEEEECCCC--eeEE--EEecCCCeeEEEEecC---C--
Q 004207          626 TENPDY-SLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNG--SCAG--VFKCQSGATQMRFQPR---L--  694 (768)
Q Consensus       626 l~t~~~-~~~~~~~h~~~V~slafsp~g~-~lLaSgs~Dg~I~iWDl~sg--~~i~--~~~~~~~i~sl~fsp~---~--  694 (768)
                      -+.+.. ....+..|...|++|+|.|.+. .+|++++.||.|.|++.++.  -...  .+.+.-++++++|.|.   |  
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~  166 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL  166 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence            987753 2356678999999999998753 46778889999999988754  1221  2224567899999886   3  


Q ss_pred             ---------CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC----CEEEEEECC
Q 004207          695 ---------GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN----GMVASASHD  761 (768)
Q Consensus       695 ---------~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg----~~LaSgs~D  761 (768)
                               ..|++|+.|+.|+||+.....-.          +    ..++.+|.+.|+.++|.|.-    .+||++|.|
T Consensus       167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~----------~----e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD  232 (299)
T KOG1332|consen  167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK----------L----ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD  232 (299)
T ss_pred             cccCcccccceeeccCCccceeeeecCCcchh----------h----hhhhhhcchhhhhhhhccccCCCceeeEEecCC
Confidence                     45999999999999998875211          1    11367999999999999975    489999999


Q ss_pred             CcEEEe
Q 004207          762 KCVKIW  767 (768)
Q Consensus       762 G~V~IW  767 (768)
                      |+|.||
T Consensus       233 g~viIw  238 (299)
T KOG1332|consen  233 GTVIIW  238 (299)
T ss_pred             CcEEEE
Confidence            999999

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.81  E-value=5.2e-19  Score=179.40  Aligned_cols=212  Identities=21%  Similarity=0.345  Sum_probs=170.2

Q ss_pred             EecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe----------EEEE-----eccCCCCEEEEEEcC-CCCEE
Q 004207          550 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT----------VKST-----LEEHTQWITDVRFSP-SLSRL  612 (768)
Q Consensus       550 ~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~~----------~~~t-----l~~h~~~V~sl~fsp-dg~~L  612 (768)
                      ..+.|.+.|+++.+.+ .|+|+++|+.||.|.|||++...          .+..     -.+|...|.++.|-| |...|
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            3467899999999988 79999999999999999997533          1111     135888999999999 56688


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCC--CCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEE
Q 004207          613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR  689 (768)
Q Consensus       613 aTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~--g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~  689 (768)
                      .+++.|.+++|||.++-.. ...|+ -.+.|++-+|+|-  ...++++|..|-.|++-|+.+|.+.+++.+ ...|.++.
T Consensus       118 tssSFDhtlKVWDtnTlQ~-a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~  195 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQE-AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE  195 (397)
T ss_pred             ecccccceEEEeeccccee-eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence            9999999999999998654 33443 4567888888874  356888999999999999999999999986 56799999


Q ss_pred             EecCCCE-EEEEEcCCeEEEEECCCceEeeecceeEEeecCCCc---eE-EeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 004207          690 FQPRLGR-ILAAAIENYISILDVETQVCRLKLQTLELWNMTENK---TL-TLSAHDKLVSSLAASTVNGMVASASHDKCV  764 (768)
Q Consensus       690 fsp~~~~-llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~---~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V  764 (768)
                      |+|...+ |++|+.||.|++||++....     ++++.|...++   .+ +-.+|.+.|+.++|+.++.++++++.|..+
T Consensus       196 Wsp~~e~vLatgsaDg~irlWDiRrasg-----cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~  270 (397)
T KOG4283|consen  196 WSPSSEWVLATGSADGAIRLWDIRRASG-----CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI  270 (397)
T ss_pred             eccCceeEEEecCCCceEEEEEeecccc-----eeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccce
Confidence            9999888 45677899999999986521     23333443322   12 355899999999999999999999999999


Q ss_pred             EEeC
Q 004207          765 KIWK  768 (768)
Q Consensus       765 ~IWD  768 (768)
                      ++|+
T Consensus       271 r~wn  274 (397)
T KOG4283|consen  271 RVWN  274 (397)
T ss_pred             EEee
Confidence            9996

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.81  E-value=1.1e-19  Score=188.72  Aligned_cols=214  Identities=19%  Similarity=0.326  Sum_probs=174.8

Q ss_pred             EEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          547 EFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       547 ~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      .+..+.+|.+.|.|++=+|.. ..+++|+.||.|+|||+...++..++..|.+.|..|++..  ..+++++.|++|+.|.
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence            456678999999999999977 6899999999999999999999999999999999999987  6789999999999999


Q ss_pred             CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEE-cC
Q 004207          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA-IE  703 (768)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags-~D  703 (768)
                      ++.+  ++.++.+ .+.+..|+-+.. ..+++||+.  .|.|||.....++..+.. -..|.++.|+|....|++++ +|
T Consensus       136 ~~~~--p~~tilg-~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD  209 (433)
T KOG0268|consen  136 IDGP--PLHTILG-KSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD  209 (433)
T ss_pred             ccCC--cceeeec-cccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence            8863  4666664 456777776655 447888876  599999988888888876 45589999999877766555 99


Q ss_pred             CeEEEEECCCceEeeecc------------------------eeEEeecCCC--ceEEeccCCCCeeEEEEeCCCCEEEE
Q 004207          704 NYISILDVETQVCRLKLQ------------------------TLELWNMTEN--KTLTLSAHDKLVSSLAASTVNGMVAS  757 (768)
Q Consensus       704 g~I~IwD~~t~~~~~~~~------------------------~I~iwd~~~~--~~~~l~~H~~~I~sla~spdg~~LaS  757 (768)
                      +.|.+||+++.....+.-                        .+..+|+..-  .+....+|.+.|.+|+|+|.|.-|++
T Consensus       210 rsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvs  289 (433)
T KOG0268|consen  210 RSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVS  289 (433)
T ss_pred             CceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcc
Confidence            999999999876554432                        3344443321  12245688899999999999999999


Q ss_pred             EECCCcEEEeC
Q 004207          758 ASHDKCVKIWK  768 (768)
Q Consensus       758 gs~DG~V~IWD  768 (768)
                      ||.|.+|+||.
T Consensus       290 gsyDksIRIf~  300 (433)
T KOG0268|consen  290 GSYDKSIRIFP  300 (433)
T ss_pred             ccccceEEEee
Confidence            99999999984

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=2.8e-18  Score=175.62  Aligned_cols=207  Identities=19%  Similarity=0.338  Sum_probs=168.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee
Q 004207          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~  637 (768)
                      ..||.|++.|.+||+|+.||.|.|||+.|..+-..+.+|..+|++++|+++|+.|+|+|.|..|.+||+..+.. +..+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~-l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP-LKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc-eeEEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999998764 22221


Q ss_pred             cCCCCeEEEE-----------------------------------------------EeCCCCeEEEEEeCCCcEEEEEC
Q 004207          638 GHSTTVMSLD-----------------------------------------------FHPSKEDLLCSCDNNSEIRYWSI  670 (768)
Q Consensus       638 ~h~~~V~sla-----------------------------------------------fsp~g~~lLaSgs~Dg~I~iWDl  670 (768)
                       ..++|+.+.                                               |++.|+ ++++|...|.+.++|.
T Consensus       105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YIITGTSKGKLLVYDA  182 (405)
T ss_pred             -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EEEEecCcceEEEEec
Confidence             122333333                                               333444 5558888999999999


Q ss_pred             CCCeeEEEEecC--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEe---------eecc------------------
Q 004207          671 NNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVETQVCR---------LKLQ------------------  721 (768)
Q Consensus       671 ~sg~~i~~~~~~--~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~---------~~~~------------------  721 (768)
                      .+.+|+..++..  ..|..+.|+-.+.+|+.-+.|..|+.|+++.-...         +++.                  
T Consensus       183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge  262 (405)
T KOG1273|consen  183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE  262 (405)
T ss_pred             chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence            999999888753  56888999999999999999999999998632111         1111                  


Q ss_pred             ----------eeEEeecCCCceEEe-ccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 ----------TLELWNMTENKTLTL-SAHD-KLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 ----------~I~iwd~~~~~~~~l-~~H~-~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                .+.+|....|.++.+ .+.+ .....|.|+|-...|++- ..|.|+||.
T Consensus       263 Yv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~  320 (405)
T KOG1273|consen  263 YVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA  320 (405)
T ss_pred             EEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence                      789999999888754 4555 567889999998888887 779999994

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.80  E-value=2.8e-18  Score=184.07  Aligned_cols=211  Identities=20%  Similarity=0.360  Sum_probs=166.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~--~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~  632 (768)
                      ...|.+|.+.|||+.|++|+.-.+|.|||+.....  ...+....-..++++.+||.+.+++|+.||.|.|||+.+.. .
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~  543 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-L  543 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-e
Confidence            45699999999999999999999999999875443  33444333457889999999999999999999999999755 4


Q ss_pred             EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004207          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE  712 (768)
Q Consensus       633 ~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~  712 (768)
                      ++.|.+|...+.||+++++|..+. +|+-|.+|+.||++.+..+........|.++.+.|.+.++++|-..+.+.|....
T Consensus       544 VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s  622 (705)
T KOG0639|consen  544 VRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS  622 (705)
T ss_pred             eecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC
Confidence            899999999999999999988655 9999999999999998877776667788888888888888888888888777664


Q ss_pred             Cce---------Eeeecc---------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          713 TQV---------CRLKLQ---------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       713 t~~---------~~~~~~---------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      ...         |+..++               .+..|...-+..+.-....+.|.++.++.|.+||+|||.|....||
T Consensus       623 kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY  701 (705)
T KOG0639|consen  623 KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY  701 (705)
T ss_pred             CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence            421         111111               2223333333333333456789999999999999999999888777

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=3.6e-18  Score=175.09  Aligned_cols=200  Identities=15%  Similarity=0.285  Sum_probs=153.1

Q ss_pred             cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC--EEE
Q 004207          494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLA  571 (768)
Q Consensus       494 ~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~--~La  571 (768)
                      .|..+.-++.-..+++++||.|.+|++|+....                   .++..+-.|.+.|++|.|.++-.  +|+
T Consensus        41 aH~~sitavAVs~~~~aSGssDetI~IYDm~k~-------------------~qlg~ll~HagsitaL~F~~~~S~shLl  101 (362)
T KOG0294|consen   41 AHAGSITALAVSGPYVASGSSDETIHIYDMRKR-------------------KQLGILLSHAGSITALKFYPPLSKSHLL  101 (362)
T ss_pred             ccccceeEEEecceeEeccCCCCcEEEEeccch-------------------hhhcceeccccceEEEEecCCcchhhee
Confidence            344444455567889999999999999954322                   34556678999999999999765  899


Q ss_pred             EEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCC-----------
Q 004207          572 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-----------  640 (768)
Q Consensus       572 Sgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~-----------  640 (768)
                      +|+.||.|.+|++...+++.++++|.+.|+.|+.+|.+++-++.+.|+.+++||+-+++.....-..+.           
T Consensus       102 S~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd  181 (362)
T KOG0294|consen  102 SGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGD  181 (362)
T ss_pred             eecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCC
Confidence            999999999999999999999999999999999999999999999999999999977653221111111           


Q ss_pred             ---------------------------CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-CCeeEEEE--
Q 004207          641 ---------------------------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRF--  690 (768)
Q Consensus       641 ---------------------------~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-~~i~sl~f--  690 (768)
                                                 ..+.|+.|... . .+++|.+|+.|.+||..+..+...+..+ ..|-.+.+  
T Consensus       182 ~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~-~-~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~  259 (362)
T KOG0294|consen  182 HFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDG-S-ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYT  259 (362)
T ss_pred             EEEEEeccEEEEEecccHhHhhhhhccccceeeeecCC-c-eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEe
Confidence                                       12444444432 2 3457777888888888888888888774 34666653  


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCc
Q 004207          691 QPRLGRILAAAIENYISILDVETQ  714 (768)
Q Consensus       691 sp~~~~llags~Dg~I~IwD~~t~  714 (768)
                      .|++.+|+++++||.|+|||++..
T Consensus       260 ~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  260 NPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             cCCceEEEEeccCceEEEEEcccc
Confidence            566778888889999999988765

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=6.7e-19  Score=192.06  Aligned_cols=249  Identities=18%  Similarity=0.156  Sum_probs=189.0

Q ss_pred             CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 004207          493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT  572 (768)
Q Consensus       493 ~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaS  572 (768)
                      +...+...++.+.+..+++++.|+++++|+..+..           ......+.++.+|++|.++|.|+++.+.+..+++
T Consensus       293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~-----------~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ys  361 (577)
T KOG0642|consen  293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK-----------KSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYS  361 (577)
T ss_pred             chhhhhhhhcCCCCCeEEEeccccchhhhhhcccC-----------CccccceeeeEEEecccCceEEEEecCCceEEEe
Confidence            44455677788999999999999999999773321           2235567889999999999999999999999999


Q ss_pred             EeCCCcEEEEECCC----------CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCC
Q 004207          573 GGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT  642 (768)
Q Consensus       573 gs~Dg~I~VWdl~t----------~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~  642 (768)
                      |+.||+|+.|++..          .....++.||++.|+.+++|.....|++|+.||+||+|+......+........+.
T Consensus       362 gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~  441 (577)
T KOG0642|consen  362 GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGY  441 (577)
T ss_pred             eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCC
Confidence            99999999996541          12345778999999999999998899999999999999987655422222223344


Q ss_pred             eEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004207          643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (768)
Q Consensus       643 V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--------~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~  714 (768)
                      ..+++|-.....+.++...-+.--++|+..+..+..+..        ...+..+.++|.....+++..|+.|++||..++
T Consensus       442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~  521 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG  521 (577)
T ss_pred             cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence            566776554322332332233333444554544444442        134677889999999999999999999999887


Q ss_pred             eEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          715 VCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       715 ~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ..++..                .+|...++++++.|+|.+|++++.||.|++|+
T Consensus       522 ~~l~s~----------------~a~~~svtslai~~ng~~l~s~s~d~sv~l~k  559 (577)
T KOG0642|consen  522 KILHSM----------------VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK  559 (577)
T ss_pred             ccchhe----------------eeccceecceeecCCCceEEeecCCceeehhh
Confidence            765433                37999999999999999999999999999995

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.80  E-value=3e-18  Score=183.06  Aligned_cols=228  Identities=16%  Similarity=0.224  Sum_probs=184.8

Q ss_pred             cccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 004207          496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH  575 (768)
Q Consensus       496 ~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~  575 (768)
                      .+...++...++|+++|..|..|.+|...+                   ...++.+.+|.+.|.+++|-....-|++++.
T Consensus       204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t-------------------~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~  264 (479)
T KOG0299|consen  204 EILTLAVSSDGKYLATGGRDRHVQIWDCDT-------------------LEHVKVFKGHRGAVSSLAFRKGTSELYSASA  264 (479)
T ss_pred             eeEEEEEcCCCcEEEecCCCceEEEecCcc-------------------cchhhcccccccceeeeeeecCccceeeeec
Confidence            334555677889999999999999995432                   2346668999999999999887778999999


Q ss_pred             CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeE
Q 004207          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL  655 (768)
Q Consensus       576 Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~l  655 (768)
                      |++|++|+++....+.++.+|.+.|.+|....-++.+.+|+.|+++++|++..  ....++.+|.+.+-|++|-.+.  -
T Consensus       265 Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In~~--H  340 (479)
T KOG0299|consen  265 DRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFINDE--H  340 (479)
T ss_pred             CCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEeccc--c
Confidence            99999999999999999999999999999888778787888999999999953  3356788899999999998764  3


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEec-----CC--------CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecce
Q 004207          656 LCSCDNNSEIRYWSINNGSCAGVFKC-----QS--------GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQT  722 (768)
Q Consensus       656 LaSgs~Dg~I~iWDl~sg~~i~~~~~-----~~--------~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~  722 (768)
                      |++|+.||.|.+|++-..+++.+...     ..        =|++++..|....+++|+.+|.|++|-+..+....    
T Consensus       341 fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i----  416 (479)
T KOG0299|consen  341 FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI----  416 (479)
T ss_pred             eeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc----
Confidence            66999999999999998888877653     11        36788999998999999999999999988763211    


Q ss_pred             eEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE
Q 004207          723 LELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS  759 (768)
Q Consensus       723 I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs  759 (768)
                       .        ++.-..-.+.|++|+|+++|+.|++|-
T Consensus       417 -~--------~l~~ls~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  417 -N--------LLYSLSLVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             -c--------eeeecccccEEEEEEEccCCCEEEEec
Confidence             0        111112456799999999999666653

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.79  E-value=2e-17  Score=187.00  Aligned_cols=252  Identities=20%  Similarity=0.282  Sum_probs=188.1

Q ss_pred             cCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCE-EEEEeCC
Q 004207          498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL-LATGGHD  576 (768)
Q Consensus       498 ~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~-LaSgs~D  576 (768)
                      ....-.+.=.+|+.|..+|+|.+|+...+.                   .+..++-..+.|++|+|..||.. +|+|+..
T Consensus       206 T~ieqsPaLDVVaiG~~~G~ViifNlK~dk-------------------il~sFk~d~g~VtslSFrtDG~p~las~~~~  266 (910)
T KOG1539|consen  206 TAIEQSPALDVVAIGLENGTVIIFNLKFDK-------------------ILMSFKQDWGRVTSLSFRTDGNPLLASGRSN  266 (910)
T ss_pred             eEeccCCcceEEEEeccCceEEEEEcccCc-------------------EEEEEEccccceeEEEeccCCCeeEEeccCC
Confidence            344445666789999999999999765442                   23444444689999999999985 6777778


Q ss_pred             CcEEEEECCCCeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe---eEEEeecCCCCeEEEEEeCCC
Q 004207          577 KKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSK  652 (768)
Q Consensus       577 g~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~---~~~~~~~h~~~V~slafsp~g  652 (768)
                      |.+.+||++..+....+. .|.+.|..+.|.|....++|++.|..+++|-.+++..   .++.-.||..+..||.|....
T Consensus       267 G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~  346 (910)
T KOG1539|consen  267 GDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ  346 (910)
T ss_pred             ceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccC
Confidence            999999999988887665 7889999999999999999999999999997765442   356667888888888887433


Q ss_pred             CeEEEEEeCCCcEE-----------------------------------------------------------------E
Q 004207          653 EDLLCSCDNNSEIR-----------------------------------------------------------------Y  667 (768)
Q Consensus       653 ~~lLaSgs~Dg~I~-----------------------------------------------------------------i  667 (768)
                      .+.+.+++.|++++                                                                 .
T Consensus       347 g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t  426 (910)
T KOG1539|consen  347 GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT  426 (910)
T ss_pred             cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence            33444555555444                                                                 4


Q ss_pred             EECCCCee-EEEEecC------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-------------------
Q 004207          668 WSINNGSC-AGVFKCQ------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-------------------  721 (768)
Q Consensus       668 WDl~sg~~-i~~~~~~------~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-------------------  721 (768)
                      |+.++... .+++...      ..+++++.++.|++.+.|++.|.|.+|++.++.....+.                   
T Consensus       427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~  506 (910)
T KOG1539|consen  427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR  506 (910)
T ss_pred             EeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc
Confidence            44433222 2222222      346788888888888888888888888888776655552                   


Q ss_pred             --------------------------------------------------eeEEeecCCCceE-EeccCCCCeeEEEEeC
Q 004207          722 --------------------------------------------------TLELWNMTENKTL-TLSAHDKLVSSLAAST  750 (768)
Q Consensus       722 --------------------------------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~sp  750 (768)
                                                                        .|+++|..+.+++ .+.+|.+.|++++|||
T Consensus       507 ~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~  586 (910)
T KOG1539|consen  507 LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP  586 (910)
T ss_pred             eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC
Confidence                                                              4555555544443 4668999999999999


Q ss_pred             CCCEEEEEECCCcEEEeC
Q 004207          751 VNGMVASASHDKCVKIWK  768 (768)
Q Consensus       751 dg~~LaSgs~DG~V~IWD  768 (768)
                      ||++|++++.|++|++||
T Consensus       587 DgrWlisasmD~tIr~wD  604 (910)
T KOG1539|consen  587 DGRWLISASMDSTIRTWD  604 (910)
T ss_pred             CCcEEEEeecCCcEEEEe
Confidence            999999999999999998

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.79  E-value=2.9e-18  Score=182.95  Aligned_cols=261  Identities=13%  Similarity=0.206  Sum_probs=194.7

Q ss_pred             CCCceEEEEecCCCCcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCe
Q 004207          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (768)
Q Consensus       479 s~~~~~l~~~~~~~~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I  558 (768)
                      ...+.++.|++..             ...+|++|..-|.|-+|+....               ......+..+..|..+|
T Consensus       186 ~~Rit~l~fHPt~-------------~~~lva~GdK~G~VG~Wn~~~~---------------~~d~d~v~~f~~hs~~V  237 (498)
T KOG4328|consen  186 DRRITSLAFHPTE-------------NRKLVAVGDKGGQVGLWNFGTQ---------------EKDKDGVYLFTPHSGPV  237 (498)
T ss_pred             ccceEEEEecccC-------------cceEEEEccCCCcEEEEecCCC---------------CCccCceEEeccCCccc
Confidence            3456666666633             2468999999999999976311               11123466778999999


Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEE--EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 004207          559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (768)
Q Consensus       559 ~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~~~~--~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~  635 (768)
                      .+|.|+| +-..|++.+.||+|++-|+++....  ..+......+.++.|+.+...++++..=|...+||+++++.....
T Consensus       238 s~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~  317 (498)
T KOG4328|consen  238 SGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN  317 (498)
T ss_pred             cceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh
Confidence            9999999 5557999999999999999875433  333334556788889888777888877789999999998876777


Q ss_pred             eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC--e---eEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 004207          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--S---CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD  710 (768)
Q Consensus       636 ~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg--~---~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD  710 (768)
                      +.-|...|.+|+++|-..++|+||+.|++++|||+|.-  +   .+..+.+...|.+..|+|.++.|++.+.|+.|+|||
T Consensus       318 ~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  318 LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD  397 (498)
T ss_pred             hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence            78899999999999999999999999999999999862  2   356666778899999999999999999999999999


Q ss_pred             CC----Cce----E---------eeecc-----------------eeEEeecCCCceE-Eecc-CCCCeeEE-EEeCCCC
Q 004207          711 VE----TQV----C---------RLKLQ-----------------TLELWNMTENKTL-TLSA-HDKLVSSL-AASTVNG  753 (768)
Q Consensus       711 ~~----t~~----~---------~~~~~-----------------~I~iwd~~~~~~~-~l~~-H~~~I~sl-a~spdg~  753 (768)
                      ..    ...    .         ...++                 .|.++|...++.+ .+.. ....|.++ .|+|-+.
T Consensus       398 ss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~  477 (498)
T KOG4328|consen  398 SSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRD  477 (498)
T ss_pred             cccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeeccccc
Confidence            84    111    1         11111                 5666666666533 2222 22245544 7999888


Q ss_pred             EEEEE-ECCCcEEEe
Q 004207          754 MVASA-SHDKCVKIW  767 (768)
Q Consensus       754 ~LaSg-s~DG~V~IW  767 (768)
                      .+++| +..|.|+||
T Consensus       478 ~~~aG~~s~Gki~vf  492 (498)
T KOG4328|consen  478 TLAAGGNSSGKIYVF  492 (498)
T ss_pred             ceeccCCccceEEEE
Confidence            55555 467888888

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.79  E-value=5.2e-18  Score=173.08  Aligned_cols=198  Identities=17%  Similarity=0.259  Sum_probs=160.5

Q ss_pred             cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-eEE-EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207          552 PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-TVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (768)
Q Consensus       552 ~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~-~~~-~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t  628 (768)
                      ....+.|.+|+||| ...+++.++.|++|++|+++.. ..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence            45567899999999 5567779999999999999862 332 44567999999999999999999999999999999999


Q ss_pred             CCeeEEEeecCCCCeEEEEEeCCCC-eEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 004207          629 PDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS  707 (768)
Q Consensus       629 ~~~~~~~~~~h~~~V~slafsp~g~-~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~  707 (768)
                      +.  +..+..|.++|.++.|-+... .+|+||+.|++|++||.|....+.++.....+.++..-..  .++++..+..|.
T Consensus       104 ~Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~p--m~vVata~r~i~  179 (347)
T KOG0647|consen  104 GQ--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYP--MAVVATAERHIA  179 (347)
T ss_pred             CC--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCc--eeEEEecCCcEE
Confidence            85  677788999999999976533 4788999999999999999999999998888888776543  688888999999


Q ss_pred             EEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          708 ILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       708 IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      +|++++.....+..              ...-+--+.||+...+....+.|+-+|.|-|.
T Consensus       180 vynL~n~~te~k~~--------------~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq  225 (347)
T KOG0647|consen  180 VYNLENPPTEFKRI--------------ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQ  225 (347)
T ss_pred             EEEcCCCcchhhhh--------------cCcccceeeEEEEEecCCceEeeeecceEEEE
Confidence            99997754322110              01123347888888888878899988888763

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=4.3e-18  Score=174.35  Aligned_cols=210  Identities=18%  Similarity=0.240  Sum_probs=155.9

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-----EEEeccCCCCEEEEEEcCCCCEEEE-EeCCCcE
Q 004207          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPSLSRLAT-SSADRTV  621 (768)
Q Consensus       548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~-----~~tl~~h~~~V~sl~fspdg~~LaT-gs~DgtI  621 (768)
                      +..+++|.+.|+|++|+.||++|++++.|++|+||+++..+.     ++.-. .-+..+.++|.||.+-++. +-...++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEE
Confidence            456789999999999999999999999999999999987432     11111 1234688999999775544 4455689


Q ss_pred             EEEECCC---CCeeE--------EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEE
Q 004207          622 RVWDTEN---PDYSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR  689 (768)
Q Consensus       622 rVWDl~t---~~~~~--------~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~  689 (768)
                      ++|.+..   +....        .....|.-.|..+-.... ..+|.+|+.|..|.+||++ |..+..+.. ....+..+
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa  235 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA  235 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence            9998753   22111        122335556666665544 4577799999999999999 888877765 34456688


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          690 FQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       690 fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .+|+|+++++++..-.|++|.+--.+-.. +.       +-.+.+.+.+|...|..++|+++...++|.|.||+++|||
T Consensus       236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~-fq-------ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwd  306 (420)
T KOG2096|consen  236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGT-FQ-------EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWD  306 (420)
T ss_pred             eCCCCcEEEEecCCCCceEEEEEeccCcc-hh-------hhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEee
Confidence            99999999999988889999763221110 00       1123457789999999999999999999999999999997

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=7.1e-17  Score=179.40  Aligned_cols=235  Identities=16%  Similarity=0.218  Sum_probs=186.2

Q ss_pred             cccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCC-CCCeEEEEEcCCCCEEEEEe
Q 004207          496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS-TSKVESCHFSPDGKLLATGG  574 (768)
Q Consensus       496 ~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H-~~~I~sl~fSpdg~~LaSgs  574 (768)
                      ++.+.++....+.||.+-.||+|++|+....                  +-....+.++ +..|.+++|+ ++..|++.+
T Consensus        27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~------------------w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g   87 (691)
T KOG2048|consen   27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN------------------WFLEPVIHGPEDRSIESLAWA-EGGRLFSSG   87 (691)
T ss_pred             ceEEEEEeccCCceeeeccCCcEEEEccCCC------------------ceeeEEEecCCCCceeeEEEc-cCCeEEeec
Confidence            3344455556777999999999999966433                  1222333444 5689999999 556678888


Q ss_pred             CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE-EEeecCCCCeEEEEEeCCCC
Q 004207          575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKE  653 (768)
Q Consensus       575 ~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~-~~~~~h~~~V~slafsp~g~  653 (768)
                      .+|.|.-||+.+++.+..+....+.|++++.+|.+..++.|+.||.+..++...+.... +.+...++.|.+++|+|++.
T Consensus        88 ~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~  167 (691)
T KOG2048|consen   88 LSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT  167 (691)
T ss_pred             CCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc
Confidence            99999999999999999999999999999999999999999999988888887665433 34455678999999999976


Q ss_pred             eEEEEEeCCCcEEEEECCCCeeEEEEec-----C----CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeE
Q 004207          654 DLLCSCDNNSEIRYWSINNGSCAGVFKC-----Q----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLE  724 (768)
Q Consensus       654 ~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-----~----~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~  724 (768)
                      . +++|+.||.|++||+..+..++....     .    .-|.++.|-.+ +.|++|.+.|+|.+||...+..+..     
T Consensus       168 ~-i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS-----  240 (691)
T KOG2048|consen  168 K-IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQS-----  240 (691)
T ss_pred             E-EEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhh-----
Confidence            4 55999999999999999887773321     1    12566777644 6799999999999999888765443     


Q ss_pred             EeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          725 LWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       725 iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                                 +..|...|.+++.++++++|+++|.|+.|.-|
T Consensus       241 -----------~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~  272 (691)
T KOG2048|consen  241 -----------HSCHDADVLALAVADNEDRVFSAGVDPKIIQY  272 (691)
T ss_pred             -----------hhhhhcceeEEEEcCCCCeEEEccCCCceEEE
Confidence                       33789999999999999999999999988654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.78  E-value=5e-19  Score=176.07  Aligned_cols=215  Identities=21%  Similarity=0.265  Sum_probs=188.0

Q ss_pred             ecCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          551 IPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (768)
Q Consensus       551 l~~H~~~I~sl~fSp---dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~  627 (768)
                      -.+|+.+|..++|||   +|-+|++++.|+.-.+-+-+++.-+.++.+|.+.|++...+.+..+.++++.|-+-+|||.-
T Consensus        10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~   89 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAV   89 (334)
T ss_pred             EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhh
Confidence            358999999999987   78889999999999999999999999999999999999999998899999999999999999


Q ss_pred             CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe-eEEEEe-cCCCeeEEEEecCCCEEEEEEcCCe
Q 004207          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENY  705 (768)
Q Consensus       628 t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~-~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~  705 (768)
                      ++.. +..+. |+.-|.+++|+.|.+++| +|+.+..++|||+...+ ....+. +.+.|..+.|......|++++.|++
T Consensus        90 tgde-lhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t  166 (334)
T KOG0278|consen   90 TGDE-LHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT  166 (334)
T ss_pred             hhhh-hhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence            8875 66665 888999999999977555 99999999999997643 334444 4677999999888899999999999


Q ss_pred             EEEEECCCceEeeecc-----------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 004207          706 ISILDVETQVCRLKLQ-----------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK  762 (768)
Q Consensus       706 I~IwD~~t~~~~~~~~-----------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG  762 (768)
                      |++||.+++..+..+.                       .|.+||...-.++....-...|.+...+|+..++++|+.|.
T Consensus       167 VRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~  246 (334)
T KOG0278|consen  167 VRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDF  246 (334)
T ss_pred             eEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcce
Confidence            9999999998776654                       88899988877776666667799999999999999999999


Q ss_pred             cEEEeC
Q 004207          763 CVKIWK  768 (768)
Q Consensus       763 ~V~IWD  768 (768)
                      .++.||
T Consensus       247 ~~~kfD  252 (334)
T KOG0278|consen  247 KVYKFD  252 (334)
T ss_pred             EEEEEe
Confidence            999886

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=2.2e-17  Score=169.17  Aligned_cols=197  Identities=17%  Similarity=0.262  Sum_probs=152.3

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---C
Q 004207          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---N  628 (768)
Q Consensus       552 ~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~---t  628 (768)
                      +.|.-.|..+-....+++|++++.|.+|.+|+++ |..+..+......-+..+.+|+|++|++++..--|+||.+-   .
T Consensus       184 ~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kd  262 (420)
T KOG2096|consen  184 RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKD  262 (420)
T ss_pred             hhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccC
Confidence            3455566677777788899999999999999998 88888887766677889999999999999999999999863   2


Q ss_pred             CC----eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-------CeeEEEEe-----cCCCeeEEEEec
Q 004207          629 PD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVFK-----CQSGATQMRFQP  692 (768)
Q Consensus       629 ~~----~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-------g~~i~~~~-----~~~~i~sl~fsp  692 (768)
                      +.    ..+..+.+|...|..++|+++.. .+++.+.||+++|||+.-       .+.+++..     ..+....+..+|
T Consensus       263 G~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP  341 (420)
T KOG2096|consen  263 GTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP  341 (420)
T ss_pred             cchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC
Confidence            22    12467899999999999999976 555999999999999752       12223221     133455899999


Q ss_pred             CCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          693 RLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       693 ~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      .+. +++.+....|.+|..++++....++               ..|...|++++|+++|++++|++ |..++|+
T Consensus       342 ~g~-~lA~s~gs~l~~~~se~g~~~~~~e---------------~~h~~~Is~is~~~~g~~~atcG-dr~vrv~  399 (420)
T KOG2096|consen  342 SGD-SLAVSFGSDLKVFASEDGKDYPELE---------------DIHSTTISSISYSSDGKYIATCG-DRYVRVI  399 (420)
T ss_pred             CCc-EEEeecCCceEEEEcccCccchhHH---------------HhhcCceeeEEecCCCcEEeeec-ceeeeee
Confidence            866 5556666778999888765433222               36899999999999999999987 4677664

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.77  E-value=3.4e-18  Score=183.33  Aligned_cols=215  Identities=18%  Similarity=0.323  Sum_probs=172.0

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eEEEEecc--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (768)
Q Consensus       552 ~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~---~~~~tl~~--h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl  626 (768)
                      -.|..-|.++.+|...++++||+. |.|+|||+...   .++..+..  ....|.++...|||+.|++|++-.+|.|||+
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            378888889999999999999975 78999998642   23333332  3457899999999999999999999999999


Q ss_pred             CCCCeeEE-EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCC
Q 004207          627 ENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN  704 (768)
Q Consensus       627 ~t~~~~~~-~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg  704 (768)
                      ......+. .+....-..++++.+||.+ +.++|..||.|.|||+.+...++.|.+ ..++.||.++++|..|.+|+-|+
T Consensus       495 AapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn  573 (705)
T KOG0639|consen  495 AAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN  573 (705)
T ss_pred             cCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence            87664332 3333334577899999977 555777799999999999999999986 56799999999999999999999


Q ss_pred             eEEEEECCCceEeeecc------------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 004207          705 YISILDVETQVCRLKLQ------------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH  760 (768)
Q Consensus       705 ~I~IwD~~t~~~~~~~~------------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~  760 (768)
                      +|+.||++++.......                        .+.+-.........+.-|++.|.++.|.+.|++|++.+.
T Consensus       574 tvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGk  653 (705)
T KOG0639|consen  574 TVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGK  653 (705)
T ss_pred             ceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCc
Confidence            99999999875433221                        344444444444566678999999999999999999999


Q ss_pred             CCcEEEeC
Q 004207          761 DKCVKIWK  768 (768)
Q Consensus       761 DG~V~IWD  768 (768)
                      |..+..|.
T Consensus       654 DnlLnawr  661 (705)
T KOG0639|consen  654 DNLLNAWR  661 (705)
T ss_pred             hhhhhhcc
Confidence            99998884

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=3.5e-17  Score=167.70  Aligned_cols=231  Identities=17%  Similarity=0.246  Sum_probs=154.9

Q ss_pred             cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (768)
Q Consensus       503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VW  582 (768)
                      .+....|.++|+|+++++|.....                    +.+..-.|..+|.+|+|.+ ...+++|+.||.|+++
T Consensus        22 ~~~~~~LLvssWDgslrlYdv~~~--------------------~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~   80 (323)
T KOG1036|consen   22 SPSSSDLLVSSWDGSLRLYDVPAN--------------------SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRY   80 (323)
T ss_pred             cCcCCcEEEEeccCcEEEEeccch--------------------hhhhheecCCceeeeeccC-CceEEEeccCceEEEE
Confidence            334567788889999999955432                    1222236889999999985 5578999999999999


Q ss_pred             ECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC
Q 004207          583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (768)
Q Consensus       583 dl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D  662 (768)
                      |+.++... .+..|..+|.||.+++....+++|++|++|++||.+... ....+.. ...|.|++...   ..|++|..|
T Consensus        81 Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~d~-~kkVy~~~v~g---~~LvVg~~~  154 (323)
T KOG1036|consen   81 DLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTFDQ-GKKVYCMDVSG---NRLVVGTSD  154 (323)
T ss_pred             EecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-ccccccc-CceEEEEeccC---CEEEEeecC
Confidence            99987665 556799999999999988899999999999999998632 2344442 34799988773   356678889


Q ss_pred             CcEEEEECCCCeeEE---EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceE------eeec-------------
Q 004207          663 SEIRYWSINNGSCAG---VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RLKL-------------  720 (768)
Q Consensus       663 g~I~iWDl~sg~~i~---~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~------~~~~-------------  720 (768)
                      ..|.+||+++.....   .-...-.+.++++.|++.-+++++-||.|.+=.++....      ..+.             
T Consensus       155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP  234 (323)
T KOG1036|consen  155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP  234 (323)
T ss_pred             ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence            999999999643222   111122344455555444444444555444322221100      0000             


Q ss_pred             -------------------ceeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEEC
Q 004207          721 -------------------QTLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH  760 (768)
Q Consensus       721 -------------------~~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~  760 (768)
                                         ..|.+||+...+.+ .+..-...|.+++|+.+|..||+++.
T Consensus       235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  235 VNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence                               03444554433332 34455677999999999999999874

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=5e-17  Score=185.68  Aligned_cols=219  Identities=19%  Similarity=0.251  Sum_probs=171.8

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      ....+++|+.+++|.+|......                   +-..+...+-++.+++|+.+|+++|.|+.|-.|+|.++
T Consensus        65 ~s~~f~~~s~~~tv~~y~fps~~-------------------~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~  125 (933)
T KOG1274|consen   65 YSNHFLTGSEQNTVLRYKFPSGE-------------------EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNL  125 (933)
T ss_pred             cccceEEeeccceEEEeeCCCCC-------------------ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEec
Confidence            34477889999999999654432                   11123334567999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeec--------CCCCeEEEEEeCCCCeEE
Q 004207          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--------HSTTVMSLDFHPSKEDLL  656 (768)
Q Consensus       585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~--------h~~~V~slafsp~g~~lL  656 (768)
                      .+......+++|.++|.+|.|+|.+++||+.+.||.|+|||+.++.. ..++.+        ....+..++|+|++..++
T Consensus       126 ~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la  204 (933)
T KOG1274|consen  126 DDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGGTLA  204 (933)
T ss_pred             cccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchh-hhhcccCCccccccccceeeeeeecCCCCeEE
Confidence            99999999999999999999999999999999999999999997654 222221        134567789999988777


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCce
Q 004207          657 CSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKT  733 (768)
Q Consensus       657 aSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~  733 (768)
                      +.+. |+.|++|+..+++....+..   ...+..+.|+|+|.||++++.||.|.|||+++... +               
T Consensus       205 ~~~~-d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~---------------  267 (933)
T KOG1274|consen  205 VPPV-DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H---------------  267 (933)
T ss_pred             eecc-CCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c---------------
Confidence            5554 88999999999888877764   34488999999999999999999999999987211 1               


Q ss_pred             EEeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 004207          734 LTLSAHDKLVSSLAASTVNGMVASASHDKCV  764 (768)
Q Consensus       734 ~~l~~H~~~I~sla~spdg~~LaSgs~DG~V  764 (768)
                          .-...|++++|.|+.+-|-.-...|..
T Consensus       268 ----~~~~~Vc~~aw~p~~n~it~~~~~g~~  294 (933)
T KOG1274|consen  268 ----EFKRAVCCEAWKPNANAITLITALGTL  294 (933)
T ss_pred             ----cccceeEEEecCCCCCeeEEEeecccc
Confidence                122457778888777655444444443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=8.4e-18  Score=179.06  Aligned_cols=186  Identities=24%  Similarity=0.422  Sum_probs=154.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCCe---EEEE------------------eccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEE
Q 004207          567 GKLLATGGHDKKAVLWCTESFT---VKST------------------LEEHTQWITDVRFSPS-LSRLATSSADRTVRVW  624 (768)
Q Consensus       567 g~~LaSgs~Dg~I~VWdl~t~~---~~~t------------------l~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVW  624 (768)
                      |+|+|+|+.|..|.|||+.--.   +..+                  -.+|+..|.++.|+.. .+.||+||.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            6799999999999999986311   1111                  2368889999999875 5689999999999999


Q ss_pred             ECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-CeeEEEEecCCCeeEEEEecCCCE-EEEEEc
Q 004207          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGR-ILAAAI  702 (768)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~~~~~i~sl~fsp~~~~-llags~  702 (768)
                      |+.++++ ..++..|.+.|.++.|+|....+|++|+.|++|.+.|.|. ...-..++..+.|-.++|.|.... +++++.
T Consensus       272 D~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td  350 (463)
T KOG0270|consen  272 DVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD  350 (463)
T ss_pred             EcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence            9999886 7777889999999999999999999999999999999994 334456667799999999987665 666678


Q ss_pred             CCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 004207          703 ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK  768 (768)
Q Consensus       703 Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IWD  768 (768)
                      ||+|+-||++...               ..+.++.+|.+.|.+|++++.. .+++|++.|+.|++|+
T Consensus       351 dG~v~~~D~R~~~---------------~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~  402 (463)
T KOG0270|consen  351 DGTVYYFDIRNPG---------------KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWK  402 (463)
T ss_pred             CceEEeeecCCCC---------------CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEe
Confidence            9999999998752               1233566999999999999765 5899999999999996

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.76  E-value=2.9e-17  Score=176.17  Aligned_cols=242  Identities=17%  Similarity=0.199  Sum_probs=195.5

Q ss_pred             cCCCCCceEEEEecCCCCccccc-----------CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCce
Q 004207          476 HNGASSKSLLMFGSDGMGSLTSA-----------PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT  544 (768)
Q Consensus       476 ~s~s~~~~~l~~~~~~~~~~~~~-----------~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~  544 (768)
                      .+-+.++.+..|..++. .-.++           +........++++|+..+.|++|+....                  
T Consensus        51 as~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k------------------  111 (673)
T KOG4378|consen   51 ASMAGDKVMRIKEKDGK-TPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK------------------  111 (673)
T ss_pred             eecCCceeEEEecccCC-CCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHH------------------
Confidence            34456777777777665 11111           2222334578899999999999954321                  


Q ss_pred             eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC-CCCEEEEEEcCCCC-EEEEEeCCCcEE
Q 004207          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLS-RLATSSADRTVR  622 (768)
Q Consensus       545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h-~~~V~sl~fspdg~-~LaTgs~DgtIr  622 (768)
                       ..++.+++|...|+|+.|+....|||+++..|.|.|..+.++....++... ...|.-+.|+|..+ +|.+++++|+|.
T Consensus       112 -l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt  190 (673)
T KOG4378|consen  112 -LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT  190 (673)
T ss_pred             -HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence             234567899999999999999999999999999999999988777666544 34566899999755 567889999999


Q ss_pred             EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc
Q 004207          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI  702 (768)
Q Consensus       623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~  702 (768)
                      +||+............|..+...|+|+|..+.+|++.+.|+.|.+||++.......+....+...++|.++|.+|++|..
T Consensus       191 lwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s  270 (673)
T KOG4378|consen  191 LWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNS  270 (673)
T ss_pred             EEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecC
Confidence            99998776656677889999999999999999999999999999999998888888888899999999999999999999


Q ss_pred             CCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC
Q 004207          703 ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN  752 (768)
Q Consensus       703 Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg  752 (768)
                      .|.|..||++..+..               +..+.+|...|++|+|-+.-
T Consensus       271 ~G~~i~YD~R~~k~P---------------v~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  271 KGELIAYDMRSTKAP---------------VAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             CceEEEEecccCCCC---------------ceEeeecccceeEEEeeecc
Confidence            999999999875432               33556899999999998754

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=2.1e-18  Score=193.46  Aligned_cols=195  Identities=16%  Similarity=0.323  Sum_probs=160.0

Q ss_pred             eEEEEEcC-CCCEEEEEeCCCcEEEEECCC---CeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCee
Q 004207          558 VESCHFSP-DGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYS  632 (768)
Q Consensus       558 I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t---~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~  632 (768)
                      +..|.|+. +.++|||++..|.|.+||+..   .+.+..+..|+..|.+++|++. ..+|++||.||+|++||++..+. 
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-  168 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-  168 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-
Confidence            55677765 677999999999999999986   5566788899999999999984 67899999999999999998665 


Q ss_pred             EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC-eeEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 004207          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILD  710 (768)
Q Consensus       633 ~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg-~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD  710 (768)
                      ..++.+....|..|.|+|...+.|+++.+.|.+.+||+|.. .+...+. +.++|.++.|+|++.+|++|+.|+.|+|||
T Consensus       169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd  248 (839)
T KOG0269|consen  169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD  248 (839)
T ss_pred             cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence            66777788899999999998889999999999999999864 3444343 467899999999999999999999999999


Q ss_pred             CCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCC-EEEEEE--CCCcEEEeC
Q 004207          711 VETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS--HDKCVKIWK  768 (768)
Q Consensus       711 ~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs--~DG~V~IWD  768 (768)
                      +.+.+....               .....-.+|.+|.|-|+.. .|++++  .|-.|+|||
T Consensus       249 ~t~~~~~~~---------------~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD  294 (839)
T KOG0269|consen  249 MTDSRAKPK---------------HTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWD  294 (839)
T ss_pred             ccCCCccce---------------eEEeecceeeeeeeccCccchhhhhhccccceEEEEe
Confidence            986432211               1112345789999999875 566666  488999997

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=5e-17  Score=180.78  Aligned_cols=223  Identities=20%  Similarity=0.283  Sum_probs=177.2

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~  585 (768)
                      .+.|++| .+..|.+|....+.                 ...+..  -+...|+++.|+++|.+|++|..+|.|.|||..
T Consensus       188 ~n~laVa-lg~~vylW~~~s~~-----------------v~~l~~--~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~  247 (484)
T KOG0305|consen  188 ANVLAVA-LGQSVYLWSASSGS-----------------VTELCS--FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVK  247 (484)
T ss_pred             CCeEEEE-ecceEEEEecCCCc-----------------eEEeEe--cCCCceEEEEECCCCCEEEEeecCCeEEEEehh
Confidence            3456665 56788999654442                 112222  227789999999999999999999999999999


Q ss_pred             CCeEEEEecc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc
Q 004207          586 SFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (768)
Q Consensus       586 t~~~~~tl~~-h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~  664 (768)
                      +.+.+.++.+ |...|-+++|.  +..+.+|+.|+.|.++|++.......++.+|...|..+.|++++. .+++|+.|+.
T Consensus       248 ~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~-~lASGgnDN~  324 (484)
T KOG0305|consen  248 EQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN-QLASGGNDNV  324 (484)
T ss_pred             hccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC-eeccCCCccc
Confidence            9999999988 99999999999  668999999999999999987765566889999999999999976 7889999999


Q ss_pred             EEEEECCCCeeEEEE-ecCCCeeEEEEecCCCEEE-EEE--cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCC
Q 004207          665 IRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRIL-AAA--IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD  740 (768)
Q Consensus       665 I~iWDl~sg~~i~~~-~~~~~i~sl~fsp~~~~ll-ags--~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~  740 (768)
                      |.|||.........+ .+...|..++|+|-..-|+ +|+  .|++|++||..++..+...                 ...
T Consensus       325 ~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v-----------------dtg  387 (484)
T KOG0305|consen  325 VFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV-----------------DTG  387 (484)
T ss_pred             eEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc-----------------ccC
Confidence            999999766655544 4567899999999755544 443  5888999988876654332                 345


Q ss_pred             CCeeEEEEeCCCCEEEEEE--CCCcEEEeC
Q 004207          741 KLVSSLAASTVNGMVASAS--HDKCVKIWK  768 (768)
Q Consensus       741 ~~I~sla~spdg~~LaSgs--~DG~V~IWD  768 (768)
                      +-|.+|.|++..+-|+++.  .++.|.||+
T Consensus       388 sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~  417 (484)
T KOG0305|consen  388 SQVCSLIWSKKYKELLSTHGYSENQITLWK  417 (484)
T ss_pred             CceeeEEEcCCCCEEEEecCCCCCcEEEEe
Confidence            6799999999887666553  467888885

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=2e-17  Score=171.39  Aligned_cols=245  Identities=15%  Similarity=0.230  Sum_probs=184.5

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEE
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLW  582 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp--dg~~LaSgs~Dg~I~VW  582 (768)
                      .+..++++...++|++|+...+                   ..+..+++|...+..+.|..  ....+.+|+.||+|++|
T Consensus        39 ~e~~vav~lSngsv~lyd~~tg-------------------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w   99 (376)
T KOG1188|consen   39 FETAVAVSLSNGSVRLYDKGTG-------------------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW   99 (376)
T ss_pred             cceeEEEEecCCeEEEEeccch-------------------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence            4578899999999999944321                   23455667888888888877  35579999999999999


Q ss_pred             ECCCCeEEEE--eccCC-CCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCCeeE-EEeecCCCCeEEEEEeCCCCe
Q 004207          583 CTESFTVKST--LEEHT-QWITDVRFSPSLSRLATSSA----DRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKED  654 (768)
Q Consensus       583 dl~t~~~~~t--l~~h~-~~V~sl~fspdg~~LaTgs~----DgtIrVWDl~t~~~~~-~~~~~h~~~V~slafsp~g~~  654 (768)
                      |+++......  +..+. .+..|++....++.+++|..    |-.|.+||++.....+ .....|...|++|.|||....
T Consensus       100 D~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn  179 (376)
T KOG1188|consen  100 DIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN  179 (376)
T ss_pred             EeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC
Confidence            9987655433  34454 45677777767788888754    6689999999877644 445679999999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCC----eeEEEEecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCceEeeecc--------
Q 004207          655 LLCSCDNNSEIRYWSINNG----SCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQ--------  721 (768)
Q Consensus       655 lLaSgs~Dg~I~iWDl~sg----~~i~~~~~~~~i~sl~fsp~~-~~llags~Dg~I~IwD~~t~~~~~~~~--------  721 (768)
                      +|++|+.||.|.+||+...    .+..++.....|.++.|...+ ..|++.+...+..+|+++.+.+...+.        
T Consensus       180 lLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d  259 (376)
T KOG1188|consen  180 LLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADD  259 (376)
T ss_pred             eEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhh
Confidence            9999999999999999753    345666667789999998765 458999999999999998876544332        


Q ss_pred             ------------------------------eeEE---eecCCCce----EEec-cCCCCeeEEEEeCCCCEEEEEECCCc
Q 004207          722 ------------------------------TLEL---WNMTENKT----LTLS-AHDKLVSSLAASTVNGMVASASHDKC  763 (768)
Q Consensus       722 ------------------------------~I~i---wd~~~~~~----~~l~-~H~~~I~sla~spdg~~LaSgs~DG~  763 (768)
                                                    +..+   -+...+..    ..+. +|...|.++.|...+.+++|||+||.
T Consensus       260 ~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~  339 (376)
T KOG1188|consen  260 LRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGL  339 (376)
T ss_pred             HHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCce
Confidence                                          1111   11111111    1233 37778899999988999999999999


Q ss_pred             EEEeC
Q 004207          764 VKIWK  768 (768)
Q Consensus       764 V~IWD  768 (768)
                      |++|+
T Consensus       340 l~~Wk  344 (376)
T KOG1188|consen  340 LQAWK  344 (376)
T ss_pred             EEEEe
Confidence            99995

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=6.8e-18  Score=196.98  Aligned_cols=231  Identities=18%  Similarity=0.232  Sum_probs=180.7

Q ss_pred             CEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 004207          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTE  585 (768)
Q Consensus       507 ~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~  585 (768)
                      .+|+.|..||+|.+|+....             ..+.....+.....|++.|..+.|++... +||+|+.||.|.|||+.
T Consensus        81 GlIaGG~edG~I~ly~p~~~-------------~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDln  147 (1049)
T KOG0307|consen   81 GLIAGGLEDGNIVLYDPASI-------------IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLN  147 (1049)
T ss_pred             ceeeccccCCceEEecchhh-------------ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccC
Confidence            68999999999999954321             01223344566789999999999999655 99999999999999998


Q ss_pred             CCeEEEEec--cCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEeecCC--CCeEEEEEeCCCCeEEEEEe
Q 004207          586 SFTVKSTLE--EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHS--TTVMSLDFHPSKEDLLCSCD  660 (768)
Q Consensus       586 t~~~~~tl~--~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~--~~V~slafsp~g~~lLaSgs  660 (768)
                      ..+.-.++.  ...+.|.+|+|+.. ..+|++++.+|++.|||++..+. +..+..|.  ..+..|.|||+...-+++++
T Consensus       148 n~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p-ii~ls~~~~~~~~S~l~WhP~~aTql~~As  226 (1049)
T KOG0307|consen  148 KPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP-IIKLSDTPGRMHCSVLAWHPDHATQLLVAS  226 (1049)
T ss_pred             CcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc-ccccccCCCccceeeeeeCCCCceeeeeec
Confidence            755544442  24567999999875 56789999999999999998754 33333333  45788999999877777776


Q ss_pred             CC---CcEEEEECCCC-eeEEEEe-cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceE
Q 004207          661 NN---SEIRYWSINNG-SCAGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTL  734 (768)
Q Consensus       661 ~D---g~I~iWDl~sg-~~i~~~~-~~~~i~sl~fsp~~-~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~  734 (768)
                      .|   -.|.+||+|.- ..++++. |..+|.++.|.+.+ .++++++.|+.|.+|+.++++.+..+.             
T Consensus       227 ~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p-------------  293 (1049)
T KOG0307|consen  227 GDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP-------------  293 (1049)
T ss_pred             CCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC-------------
Confidence            55   36999999863 4566664 46779999999877 678889999999999999977655443             


Q ss_pred             EeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEe
Q 004207          735 TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIW  767 (768)
Q Consensus       735 ~l~~H~~~I~sla~spdg~-~LaSgs~DG~V~IW  767 (768)
                         ...+.+..+.|+|... .|++++-||.|-||
T Consensus       294 ---~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~  324 (1049)
T KOG0307|consen  294 ---AQGNWCFDVQWCPRNPSVMAAASFDGKISIY  324 (1049)
T ss_pred             ---CCCcceeeeeecCCCcchhhhheeccceeee
Confidence               5567899999999885 88888999999987

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.74  E-value=1.3e-16  Score=180.36  Aligned_cols=237  Identities=15%  Similarity=0.194  Sum_probs=190.7

Q ss_pred             cCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 004207          498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK  577 (768)
Q Consensus       498 ~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg  577 (768)
                      ....-...++++++.-.+...+.|+......++..+..             ..++.-...++||+.+++|++.+.|...|
T Consensus       404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~-------------~~~~~~~~~~~av~vs~CGNF~~IG~S~G  470 (910)
T KOG1539|consen  404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDP-------------KRFKKDDINATAVCVSFCGNFVFIGYSKG  470 (910)
T ss_pred             ccchhhhhcceeEEecCcceEEEEeccCcccccEEecC-------------ccccccCcceEEEEEeccCceEEEeccCC
Confidence            33444556777777777888888876655433222111             11122446799999999999999999999


Q ss_pred             cEEEEECCCCeEEEEe---ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCe
Q 004207          578 KAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  654 (768)
Q Consensus       578 ~I~VWdl~t~~~~~tl---~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~  654 (768)
                      +|-+|++.+|-....+   ..|.++|+.++..--++.+++++.+|.+++||..+... +..+. -...+.++..+.... 
T Consensus       471 ~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l-~~~l~-l~~~~~~iv~hr~s~-  547 (910)
T KOG1539|consen  471 TIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL-KKSLR-LGSSITGIVYHRVSD-  547 (910)
T ss_pred             eEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce-eeeec-cCCCcceeeeeehhh-
Confidence            9999999999888888   58999999999998889999999999999999987553 44443 345788888887754 


Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCce
Q 004207          655 LLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKT  733 (768)
Q Consensus       655 lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~  733 (768)
                      +++.+..|-.|+++|+.+.+.++.|.+ ...|+.++|+|+|++|++++.|++|++||+.++.++..+             
T Consensus       548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~-------------  614 (910)
T KOG1539|consen  548 LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL-------------  614 (910)
T ss_pred             hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE-------------
Confidence            666777799999999999999999984 667999999999999999999999999999887765332             


Q ss_pred             EEeccCCCCeeEEEEeCCCCEEEEEECC-CcEEEe
Q 004207          734 LTLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW  767 (768)
Q Consensus       734 ~~l~~H~~~I~sla~spdg~~LaSgs~D-G~V~IW  767 (768)
                          .-+.+++++.|+|+|.+|||...| .-|++|
T Consensus       615 ----~vd~~~~sls~SPngD~LAT~Hvd~~gIylW  645 (910)
T KOG1539|consen  615 ----LVDSPCTSLSFSPNGDFLATVHVDQNGIYLW  645 (910)
T ss_pred             ----ecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence                245678999999999999999998 679998

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.74  E-value=7.4e-17  Score=170.29  Aligned_cols=247  Identities=19%  Similarity=0.294  Sum_probs=180.5

Q ss_pred             EEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--
Q 004207          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--  585 (768)
Q Consensus       508 ~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~--  585 (768)
                      ++++|+.|..|++|......++          +.+........+..|...|++|.|+|+|++||+|+.+|.|.+|-..  
T Consensus        28 ~laT~G~D~~iriW~v~r~~~~----------~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~   97 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEPG----------GGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV   97 (434)
T ss_pred             ceecccCccceeeeeeeecCCC----------CCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence            8999999999999955433211          1224566778889999999999999999999999999999999654  


Q ss_pred             ------C--------CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCC
Q 004207          586 ------S--------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS  651 (768)
Q Consensus       586 ------t--------~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~  651 (768)
                            +        ......+.+|...|+.++|+|++.++++++.|.++++||+..+.. ...+..|...|..++|.|-
T Consensus        98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvqgvawDpl  176 (434)
T KOG1009|consen   98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQGVAWDPL  176 (434)
T ss_pred             CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee-Eeeccccccccceeecchh
Confidence                  2        334567788999999999999999999999999999999998875 7888999999999999998


Q ss_pred             CCeEEEEEeCCCcEEEEECCCCeeEEEEe--------------------c----CCCeeEEEEecCCCEEEEEEc----C
Q 004207          652 KEDLLCSCDNNSEIRYWSINNGSCAGVFK--------------------C----QSGATQMRFQPRLGRILAAAI----E  703 (768)
Q Consensus       652 g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~--------------------~----~~~i~sl~fsp~~~~llags~----D  703 (768)
                      +. .+++-+.|...+++++.....+....                    +    ..-...++|+|+|..+++.+.    +
T Consensus       177 ~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g  255 (434)
T KOG1009|consen  177 NQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVG  255 (434)
T ss_pred             hh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeC
Confidence            66 44466667666666654332222111                    1    112456889999888877542    2


Q ss_pred             C-----eEEEEECCCce-Eeeec------------------------------------------ceeEEeecCCCceEE
Q 004207          704 N-----YISILDVETQV-CRLKL------------------------------------------QTLELWNMTENKTLT  735 (768)
Q Consensus       704 g-----~I~IwD~~t~~-~~~~~------------------------------------------~~I~iwd~~~~~~~~  735 (768)
                      +     ..++|+-.... ....+                                          ..+.+||......+.
T Consensus       256 ~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~  335 (434)
T KOG1009|consen  256 GGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLA  335 (434)
T ss_pred             CceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceE
Confidence            2     23444432210 00000                                          056667766644442


Q ss_pred             --eccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207          736 --LSAHDKLVSSLAASTVNGMVASASHDKCVKI  766 (768)
Q Consensus       736 --l~~H~~~I~sla~spdg~~LaSgs~DG~V~I  766 (768)
                        -.-|-..|+.++|+++|.+|+..|.||...+
T Consensus       336 ~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~  368 (434)
T KOG1009|consen  336 VVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL  368 (434)
T ss_pred             EEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence              2357888999999999999999999997643

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.74  E-value=1.3e-16  Score=177.32  Aligned_cols=266  Identities=17%  Similarity=0.253  Sum_probs=202.5

Q ss_pred             cccCCCCCceEEEEecCCCCccc---------------ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccc
Q 004207          474 LQHNGASSKSLLMFGSDGMGSLT---------------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE  538 (768)
Q Consensus       474 l~~s~s~~~~~l~~~~~~~~~~~---------------~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~  538 (768)
                      ..++++.++++++|.++...+..               +-.....++.++|.+-+.-|..++|...              
T Consensus       281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~--------------  346 (764)
T KOG1063|consen  281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK--------------  346 (764)
T ss_pred             hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEecc--------------
Confidence            45778899999999999763322               2233445666777777777888888411              


Q ss_pred             cCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----CCeEEEEeccCCCCEEEEEEcCCCCEEEE
Q 004207          539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSPSLSRLAT  614 (768)
Q Consensus       539 ~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~----t~~~~~tl~~h~~~V~sl~fspdg~~LaT  614 (768)
                        +...+.....+.+|.+.|.+++|+|.|++|++++.|-+-+||-.-    +...+..-.-|...++|++|-+....|++
T Consensus       347 --d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVS  424 (764)
T KOG1063|consen  347 --DKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVS  424 (764)
T ss_pred             --CccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeee
Confidence              223345566778999999999999999999999999999998643    12334444568888999999986678889


Q ss_pred             EeCCCcEEEEECCC-------------------------------------------CCe--------------------
Q 004207          615 SSADRTVRVWDTEN-------------------------------------------PDY--------------------  631 (768)
Q Consensus       615 gs~DgtIrVWDl~t-------------------------------------------~~~--------------------  631 (768)
                      |...+.+|+|+...                                           +..                    
T Consensus       425 gAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP  504 (764)
T KOG1063|consen  425 GADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPP  504 (764)
T ss_pred             cccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCC
Confidence            88889999998640                                           000                    


Q ss_pred             ------------eEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEecC-CCeeEEEEecC
Q 004207          632 ------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQ-SGATQMRFQPR  693 (768)
Q Consensus       632 ------------~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-----g~I~iWDl~sg~~i~~~~~~-~~i~sl~fsp~  693 (768)
                                  .+..+-||...|++++.+|+++ ++++++..     ..|++|+..+...+..+..| -.|+.++|+|+
T Consensus       505 ~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpd  583 (764)
T KOG1063|consen  505 TEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPD  583 (764)
T ss_pred             hHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCC
Confidence                        0112347889999999999977 77676543     36999999998888776654 46999999999


Q ss_pred             CCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          694 LGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       694 ~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +.+|++++.|.++.+|.........            ........|...|.++.|+|++.+|+|+|.|.+|+||.
T Consensus       584 g~~LLsvsRDRt~sl~~~~~~~~~e------------~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~  646 (764)
T KOG1063|consen  584 GRYLLSVSRDRTVSLYEVQEDIKDE------------FRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE  646 (764)
T ss_pred             CcEEEEeecCceEEeeeeecccchh------------hhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence            9999999999999999875432210            01113568999999999999999999999999999994

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.74  E-value=7.3e-17  Score=163.67  Aligned_cols=222  Identities=22%  Similarity=0.342  Sum_probs=167.3

Q ss_pred             ceeeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEe-----ccCCCCEEEEEEcC--CCCEEE
Q 004207          543 FTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTL-----EEHTQWITDVRFSP--SLSRLA  613 (768)
Q Consensus       543 ~~~~~~~~l~-~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~-~~tl-----~~h~~~V~sl~fsp--dg~~La  613 (768)
                      .++..+..+. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+     .+|....++-+|+|  +++.++
T Consensus       110 ~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~  188 (370)
T KOG1007|consen  110 STLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA  188 (370)
T ss_pred             chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE
Confidence            3444555555 5667999999999999998875 88999999987665 3333     23556788899999  577777


Q ss_pred             EEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC-eeEEEEecCCC-eeEEEEe
Q 004207          614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSG-ATQMRFQ  691 (768)
Q Consensus       614 Tgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg-~~i~~~~~~~~-i~sl~fs  691 (768)
                      +. .|++++.||+++..+...+-.+|...|..++|+|+..++|++|+.||.|+|||.|.- ..+..+..+.. |.++.|+
T Consensus       189 tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn  267 (370)
T KOG1007|consen  189 TT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN  267 (370)
T ss_pred             Ee-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec
Confidence            75 689999999998877667778899999999999999999999999999999999864 45566655443 8899999


Q ss_pred             cCCC-EEEEEEcCCeEEEEECCCceEeeecc-------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCC-EEE
Q 004207          692 PRLG-RILAAAIENYISILDVETQVCRLKLQ-------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVA  756 (768)
Q Consensus       692 p~~~-~llags~Dg~I~IwD~~t~~~~~~~~-------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~-~La  756 (768)
                      |... .|+++++|..|.+|....-.....+.             .-+.--+..+.+.++..|.+.|++++|+.-.. .||
T Consensus       268 ~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFA  347 (370)
T KOG1007|consen  268 PEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFA  347 (370)
T ss_pred             CccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEE
Confidence            9654 47788999999998765432111100             00000123344557889999999999997766 567


Q ss_pred             EEECCCcEEE
Q 004207          757 SASHDKCVKI  766 (768)
Q Consensus       757 Sgs~DG~V~I  766 (768)
                      +-|.||.|.|
T Consensus       348 SLSYDGRviI  357 (370)
T KOG1007|consen  348 SLSYDGRVII  357 (370)
T ss_pred             EeccCceEEe
Confidence            8899999876

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=3.6e-16  Score=160.07  Aligned_cols=204  Identities=19%  Similarity=0.298  Sum_probs=153.1

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----CCeEEEEeccCCCCEEEEEEcC-C-CCEEEEEeCCCcEEEEE
Q 004207          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSP-S-LSRLATSSADRTVRVWD  625 (768)
Q Consensus       552 ~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~----t~~~~~tl~~h~~~V~sl~fsp-d-g~~LaTgs~DgtIrVWD  625 (768)
                      .+|.+-|+|+.|.+.|+.+|+|+.|++|+|||.+    +..+....+.|.+.|..|.|.+ . |..+|+|+.|++|.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            5788999999999999999999999999999954    3457778899999999999965 3 89999999999999997


Q ss_pred             CCC--C------CeeEEEeecCCCCeEEEEEeCCC-CeEEEEEeCCCcEEEEECCC------CeeEEEEe--------cC
Q 004207          626 TEN--P------DYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINN------GSCAGVFK--------CQ  682 (768)
Q Consensus       626 l~t--~------~~~~~~~~~h~~~V~slafsp~g-~~lLaSgs~Dg~I~iWDl~s------g~~i~~~~--------~~  682 (768)
                      -..  .      -....++....+.|++|.|.|.. ...+++++.||.||||+.-.      ....+.+.        .+
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            521  1      12245667778899999999963 35688999999999998654      23333333        34


Q ss_pred             CCeeEEEEecCC---CEEEEEEcC-----CeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC--
Q 004207          683 SGATQMRFQPRL---GRILAAAIE-----NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN--  752 (768)
Q Consensus       683 ~~i~sl~fsp~~---~~llags~D-----g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg--  752 (768)
                      ....|+.|+|..   .+|++|+.+     +.+.||........        |    .++.++.+|..+|++|+|.|+-  
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK--------w----~kva~L~d~~dpI~di~wAPn~Gr  237 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK--------W----LKVAELPDHTDPIRDISWAPNIGR  237 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce--------e----eeehhcCCCCCcceeeeeccccCC
Confidence            456788888742   335555544     26667665442210        1    1123566999999999999974  


Q ss_pred             --CEEEEEECCCcEEEeC
Q 004207          753 --GMVASASHDKCVKIWK  768 (768)
Q Consensus       753 --~~LaSgs~DG~V~IWD  768 (768)
                        .+||+++.|| |+||+
T Consensus       238 ~y~~lAvA~kDg-v~I~~  254 (361)
T KOG2445|consen  238 SYHLLAVATKDG-VRIFK  254 (361)
T ss_pred             ceeeEEEeecCc-EEEEE
Confidence              4899999999 99985

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.73  E-value=1.4e-16  Score=167.45  Aligned_cols=202  Identities=20%  Similarity=0.317  Sum_probs=155.2

Q ss_pred             EEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEeccCCCCEEEEEEcCC-CCEEEEEeCC
Q 004207          548 FQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPS-LSRLATSSAD  618 (768)
Q Consensus       548 ~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~-------~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~D  618 (768)
                      .-.+.+|+++|..++|+| +...||+|+.|.+|.||.+...       +.+..+.+|...|--|.|+|. .+.|++++.|
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            345679999999999999 5668999999999999988653       456788999999999999996 5789999999


Q ss_pred             CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC--eeEEEEecCCCE
Q 004207          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGR  696 (768)
Q Consensus       619 gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~--i~sl~fsp~~~~  696 (768)
                      .+|.|||+.+++. +..+. |...|++++|+.+|. +||+.+.|+.|+|||.++++.+..-..+.+  ...+.|-.++. 
T Consensus       154 n~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-  229 (472)
T KOG0303|consen  154 NTVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-  229 (472)
T ss_pred             ceEEEEeccCCce-eeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-
Confidence            9999999999886 44455 999999999999987 777888999999999999999988754333  55677888877 


Q ss_pred             EEEEE----cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEe
Q 004207          697 ILAAA----IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIW  767 (768)
Q Consensus       697 llags----~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~IW  767 (768)
                      +++.+    ++..|.+||.........+     .+        + ...+.|.---|.++.++|+.+| .|+.|+-|
T Consensus       230 i~tTGfsr~seRq~aLwdp~nl~eP~~~-----~e--------l-DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYy  291 (472)
T KOG0303|consen  230 IFTTGFSRMSERQIALWDPNNLEEPIAL-----QE--------L-DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYF  291 (472)
T ss_pred             eeeeccccccccceeccCcccccCccee-----EE--------e-ccCCceEEeeecCCCCEEEEEecCCcceEEE
Confidence            55544    4667888887664332111     11        1 2233444455677777665555 47777765

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.72  E-value=1.7e-16  Score=170.45  Aligned_cols=193  Identities=17%  Similarity=0.236  Sum_probs=159.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee
Q 004207          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~  637 (768)
                      -+|++......|+++|+..++|+|||++...+.+.+++|...|++|.++....|||+++..|.|.|..+.++.. ...|.
T Consensus        82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-tt~f~  160 (673)
T KOG4378|consen   82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-TTTFT  160 (673)
T ss_pred             HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-cccee
Confidence            44555555558999999999999999998778889999999999999999999999999999999999988664 33444


Q ss_pred             cC-CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeeEEEEecCCCE-EEEEEcCCeEEEEECCC
Q 004207          638 GH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGR-ILAAAIENYISILDVET  713 (768)
Q Consensus       638 ~h-~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~--~~~~i~sl~fsp~~~~-llags~Dg~I~IwD~~t  713 (768)
                      .. ...|.-+.|++..+.+|.+++.+|.|.+||+.....+..+.  +..+...+||+|.... |++.+.|..|.+||.+.
T Consensus       161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s  240 (673)
T KOG4378|consen  161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS  240 (673)
T ss_pred             cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence            33 34566899999999999999999999999999877776654  3567788999997665 66788999999999986


Q ss_pred             ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          714 QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       714 ~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .....++                 ....+..+|+|.++|.+|+.|...|.|..||
T Consensus       241 ~~s~~~l-----------------~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD  278 (673)
T KOG4378|consen  241 QASTDRL-----------------TYSHPLSTVAFSECGTYLCAGNSKGELIAYD  278 (673)
T ss_pred             cccccee-----------------eecCCcceeeecCCceEEEeecCCceEEEEe
Confidence            5443221                 2334678999999999999999999999987

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=3.2e-16  Score=168.01  Aligned_cols=200  Identities=20%  Similarity=0.310  Sum_probs=160.5

Q ss_pred             CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK  578 (768)
Q Consensus       499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~  578 (768)
                      ..+..+.+.||+.|...+++.+|....+.                   .+..+.+|=..|+|+.|+-||.+|+||+.||.
T Consensus        86 al~s~n~G~~l~ag~i~g~lYlWelssG~-------------------LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~  146 (476)
T KOG0646|consen   86 ALASSNLGYFLLAGTISGNLYLWELSSGI-------------------LLNVLSAHYQSITCLKFSDDGSHIITGSKDGA  146 (476)
T ss_pred             eeecCCCceEEEeecccCcEEEEEecccc-------------------HHHHHHhhccceeEEEEeCCCcEEEecCCCcc
Confidence            44456778899988899999999654442                   24455789999999999999999999999999


Q ss_pred             EEEEECC---------CCeEEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEE
Q 004207          579 AVLWCTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD  647 (768)
Q Consensus       579 I~VWdl~---------t~~~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sla  647 (768)
                      |.+|.+.         +-++++.+..|+-+|+++...+.  ..+|+|+|.|.+|++||+..+.. +.++. ....+.+++
T Consensus       147 V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L-Llti~-fp~si~av~  224 (476)
T KOG0646|consen  147 VLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL-LLTIT-FPSSIKAVA  224 (476)
T ss_pred             EEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee-eEEEe-cCCcceeEE
Confidence            9999753         24567888999999999988764  46899999999999999998875 33333 356899999


Q ss_pred             EeCCCCeEEEEEeCCCcEEEEECCCCe----------------eEEEEec-C--CCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207          648 FHPSKEDLLCSCDNNSEIRYWSINNGS----------------CAGVFKC-Q--SGATQMRFQPRLGRILAAAIENYISI  708 (768)
Q Consensus       648 fsp~g~~lLaSgs~Dg~I~iWDl~sg~----------------~i~~~~~-~--~~i~sl~fsp~~~~llags~Dg~I~I  708 (768)
                      .+|-+. .+++|+.+|.|.+.++....                .+..+.+ .  ..|+|++++-++..|++|+.||.|+|
T Consensus       225 lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vcv  303 (476)
T KOG0646|consen  225 LDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCV  303 (476)
T ss_pred             Eccccc-EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEE
Confidence            999866 55689999999998875322                2333333 2  36999999999999999999999999


Q ss_pred             EECCCceEeeec
Q 004207          709 LDVETQVCRLKL  720 (768)
Q Consensus       709 wD~~t~~~~~~~  720 (768)
                      ||+.+..++..+
T Consensus       304 Wdi~S~Q~iRtl  315 (476)
T KOG0646|consen  304 WDIYSKQCIRTL  315 (476)
T ss_pred             EecchHHHHHHH
Confidence            999887765443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.70  E-value=1.9e-16  Score=163.26  Aligned_cols=229  Identities=17%  Similarity=0.255  Sum_probs=169.9

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEC
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCT  584 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl  584 (768)
                      +.++|.|+.-|.|++.+....                   .....+.+|...|..|.|+|+. ++|++++.|..|++|++
T Consensus       105 ~p~la~~G~~GvIrVid~~~~-------------------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI  165 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSG-------------------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI  165 (385)
T ss_pred             CeeEEeecceeEEEEEecchh-------------------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence            456666666666666643222                   3456778999999999999965 68999999999999999


Q ss_pred             CCCeEEEEe---ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe------------------------e---EE
Q 004207          585 ESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY------------------------S---LR  634 (768)
Q Consensus       585 ~t~~~~~tl---~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~------------------------~---~~  634 (768)
                      .+..++..+   .+|.+.|.+|.|++++.+|++++.|..|++|++...+.                        .   ..
T Consensus       166 ~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs  245 (385)
T KOG1034|consen  166 QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS  245 (385)
T ss_pred             cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence            999999887   67999999999999999999999999999999983221                        0   01


Q ss_pred             EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEEC-CCCe-------------eEEEEec-CCCee--EEEEecCCCEE
Q 004207          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NNGS-------------CAGVFKC-QSGAT--QMRFQPRLGRI  697 (768)
Q Consensus       635 ~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl-~sg~-------------~i~~~~~-~~~i~--sl~fsp~~~~l  697 (768)
                      +-.-|...|-|+.|.-   .++++-+.++.|.+|.. .-++             .+..+.. ...+.  ..+|+|....|
T Consensus       246 t~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l  322 (385)
T KOG1034|consen  246 TTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML  322 (385)
T ss_pred             ccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence            2234777888888873   36668777889999976 2111             1222222 12233  35567877889


Q ss_pred             EEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          698 LAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       698 lags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +.|...|.|++||++......            ...++.......|...+|+.|+.+|+..++|++|.-||
T Consensus       323 a~gnq~g~v~vwdL~~~ep~~------------~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  323 ALGNQSGKVYVWDLDNNEPPK------------CTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             hhccCCCcEEEEECCCCCCcc------------CceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence            999999999999998754421            11222223345789999999999999999999999886

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.70  E-value=3.5e-15  Score=158.39  Aligned_cols=182  Identities=13%  Similarity=0.097  Sum_probs=142.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCeeEEEeecCCCCeEE
Q 004207          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  645 (768)
Q Consensus       567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~L-aTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~s  645 (768)
                      +.++++++.|+.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++. +..+..+. .+..
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~~~~   77 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGP-DPEL   77 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCC-CccE
Confidence            3578899999999999999999888887654 46789999999876 5667889999999998765 44444443 3578


Q ss_pred             EEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCceEeeecceeE
Q 004207          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQTLE  724 (768)
Q Consensus       646 lafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg-~I~IwD~~t~~~~~~~~~I~  724 (768)
                      ++|+|+++.+++++..++.|++||+++.+.+..+.....+..++|+|++..++++..++ .+.+||..+......     
T Consensus        78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~-----  152 (300)
T TIGR03866        78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN-----  152 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE-----
Confidence            89999998787777788999999999988888887666678899999999988887764 466778776543211     


Q ss_pred             EeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 004207          725 LWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK  768 (768)
Q Consensus       725 iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~IWD  768 (768)
                                 + .....+.+++|++++.+|++++ .|+.|++||
T Consensus       153 -----------~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d  185 (300)
T TIGR03866       153 -----------V-LVDQRPRFAEFTADGKELWVSSEIGGTVSVID  185 (300)
T ss_pred             -----------E-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEE
Confidence                       0 1223457899999999886554 699999996

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.69  E-value=7.8e-16  Score=170.88  Aligned_cols=232  Identities=13%  Similarity=0.188  Sum_probs=165.0

Q ss_pred             ccccCCCceeeEEEEecCCCCCeEEEEEcCC-----------CCEEEEEeCCCcEEEEECCCCeEEEE------------
Q 004207          536 SAEVGKGFTFTEFQLIPASTSKVESCHFSPD-----------GKLLATGGHDKKAVLWCTESFTVKST------------  592 (768)
Q Consensus       536 ~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd-----------g~~LaSgs~Dg~I~VWdl~t~~~~~t------------  592 (768)
                      +|++.+.........+--|...|+.+.--|.           ...|+||+.|++|++||+..+..-.+            
T Consensus       350 vWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~k  429 (1080)
T KOG1408|consen  350 VWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSK  429 (1080)
T ss_pred             EEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhc
Confidence            4555554444445555567777777665541           23589999999999999875211000            


Q ss_pred             -------------------------eccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEE
Q 004207          593 -------------------------LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD  647 (768)
Q Consensus       593 -------------------------l~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sla  647 (768)
                                               .......|.+|+.+|++.+||+|..-|+|||||+..-+. .....+|...|.|+.
T Consensus       430 i~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-~~~~eAHesEilcLe  508 (1080)
T KOG1408|consen  430 IPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-TCFMEAHESEILCLE  508 (1080)
T ss_pred             CccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh-hhheecccceeEEEe
Confidence                                     001334689999999999999999999999999987665 667788999999999


Q ss_pred             EeCC--CCeEEEEEeCCCcEEEEECCC-CeeEEEEec-CCCeeEEEEecCC--CEEEEEEcCCeEEE-------------
Q 004207          648 FHPS--KEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRL--GRILAAAIENYISI-------------  708 (768)
Q Consensus       648 fsp~--g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~~-~~~i~sl~fsp~~--~~llags~Dg~I~I-------------  708 (768)
                      |+--  +..+|++++.|..|.|||+.. ..++.++.. ...|+++.|.-.+  ..+++++.|..|.+             
T Consensus       509 yS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~  588 (1080)
T KOG1408|consen  509 YSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFP  588 (1080)
T ss_pred             ecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecc
Confidence            9742  456899999999999999853 445555554 4568888887665  45677776655432             


Q ss_pred             -----------EECCCc---e---EeeecceeEEeecCCCceEE-e---ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          709 -----------LDVETQ---V---CRLKLQTLELWNMTENKTLT-L---SAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       709 -----------wD~~t~---~---~~~~~~~I~iwd~~~~~~~~-l---~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                                 ||+.-.   +   .....+.|+||++..++... |   .+|++....|...|.|.||++.+.|.++.|+
T Consensus       589 r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~  668 (1080)
T KOG1408|consen  589 RHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFV  668 (1080)
T ss_pred             ccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEE
Confidence                       222110   0   01112278888888777653 2   2677888899999999999999999999998


Q ss_pred             C
Q 004207          768 K  768 (768)
Q Consensus       768 D  768 (768)
                      |
T Consensus       669 D  669 (1080)
T KOG1408|consen  669 D  669 (1080)
T ss_pred             E
Confidence            7

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.69  E-value=3.9e-16  Score=166.88  Aligned_cols=213  Identities=19%  Similarity=0.274  Sum_probs=163.6

Q ss_pred             ceeeEEEEecCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCC----CeEEEEeccCCCCEEEEEEcCC-CCEEEEE
Q 004207          543 FTFTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPS-LSRLATS  615 (768)
Q Consensus       543 ~~~~~~~~l~~H~~~I~sl~fSpdg--~~LaSgs~Dg~I~VWdl~t----~~~~~tl~~h~~~V~sl~fspd-g~~LaTg  615 (768)
                      ..+.....++-|.++|+|++|+|..  +++|+|..-|.|-+||+.+    ..-+..+..|..+|.++.|+|. ...+++.
T Consensus       174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss  253 (498)
T KOG4328|consen  174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS  253 (498)
T ss_pred             ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence            3445556677899999999999954  5788999999999999953    2234566789999999999994 5689999


Q ss_pred             eCCCcEEEEECCCCCee-EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee-EEEEe-cCCCeeEEEEec
Q 004207          616 SADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQP  692 (768)
Q Consensus       616 s~DgtIrVWDl~t~~~~-~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~-i~~~~-~~~~i~sl~fsp  692 (768)
                      |+||+|++-|++..... +.........+.++.|+.+...++ .++.=|...+||++++.. ...+. +...|..|+++|
T Consensus       254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP  332 (498)
T KOG4328|consen  254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP  332 (498)
T ss_pred             ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence            99999999999875421 222222345677788888766555 555566999999998654 33332 345799999999


Q ss_pred             CCCE-EEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          693 RLGR-ILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       693 ~~~~-llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ...+ +++++.|++++|||++.......            ..+....|...|.+.+|||.+..|+|.+.|..|+|||
T Consensus       333 ~~p~~laT~s~D~T~kIWD~R~l~~K~s------------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  333 VCPWFLATASLDQTAKIWDLRQLRGKAS------------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD  397 (498)
T ss_pred             CCchheeecccCcceeeeehhhhcCCCC------------cceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence            8765 77788999999999987433211            1344558999999999999999999999999999997

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=3.1e-16  Score=171.82  Aligned_cols=207  Identities=22%  Similarity=0.322  Sum_probs=154.9

Q ss_pred             ceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC--EEEEEeCC--
Q 004207          543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSAD--  618 (768)
Q Consensus       543 ~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~--~LaTgs~D--  618 (768)
                      +...+-..+++|++.|.||+..|.|.+|++|+.||+|+||.+.++.|+.++.. .+.|.||+|+|.+.  .||++-.+  
T Consensus       388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~  466 (733)
T KOG0650|consen  388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECV  466 (733)
T ss_pred             CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCce
Confidence            44456677899999999999999999999999999999999999999988753 45788888888643  33333221  


Q ss_pred             ------------------------------CcEEEEECCC--------------------------CCe-----------
Q 004207          619 ------------------------------RTVRVWDTEN--------------------------PDY-----------  631 (768)
Q Consensus       619 ------------------------------gtIrVWDl~t--------------------------~~~-----------  631 (768)
                                                    +.|..|.-..                          |.+           
T Consensus       467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~  546 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK  546 (733)
T ss_pred             EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence                                          1222332210                          000           


Q ss_pred             --e---------EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEE
Q 004207          632 --S---------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA  699 (768)
Q Consensus       632 --~---------~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~lla  699 (768)
                        .         ...|....+.|.++.|||....+|++ + -..|+|||+.....++.+.. ..-|..++++|.|..|++
T Consensus       547 ~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVa-T-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~  624 (733)
T KOG0650|consen  547 SVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVA-T-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL  624 (733)
T ss_pred             eEEEEecccccccCchhhcCCceeEEEecCCCceEEEE-e-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence              0         01111234678999999998866644 3 46899999988777766554 344788999999999999


Q ss_pred             EEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          700 AAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       700 gs~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      ++.|+.+..||+.-.               +....++.-|...|++|+|++.-.+|++|+.||+|.||
T Consensus       625 gs~d~k~~WfDldls---------------skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  625 GSYDKKMCWFDLDLS---------------SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF  677 (733)
T ss_pred             ecCCCeeEEEEcccC---------------cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence            999999999998643               22233556799999999999999999999999999987

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.69  E-value=2.5e-14  Score=154.54  Aligned_cols=238  Identities=26%  Similarity=0.403  Sum_probs=185.0

Q ss_pred             ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCC-CCeEEEEE-cCCCC-EEEEE
Q 004207          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHF-SPDGK-LLATG  573 (768)
Q Consensus       497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~I~sl~f-Spdg~-~LaSg  573 (768)
                      +....+......+..++.|+.+.+|......                  ..+..+..+. ..+..+.+ ++++. +++..
T Consensus        68 i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (466)
T COG2319          68 ITSIAFSPDGELLLSGSSDGTIKLWDLDNGE------------------KLIKSLEGLHDSSVSKLALSSPDGNSILLAS  129 (466)
T ss_pred             EEEEEECCCCcEEEEecCCCcEEEEEcCCCc------------------eeEEEEeccCCCceeeEEEECCCcceEEecc
Confidence            3444556677888888899999999654332                  1233333422 36777777 78887 55554


Q ss_pred             eC-CCcEEEEECCC-CeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeC
Q 004207          574 GH-DKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP  650 (768)
Q Consensus       574 s~-Dg~I~VWdl~t-~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp  650 (768)
                      +. |+.+.+|+... ......+..|...|.+++|+|++.++++++. |+.+++|++..+.. +..+.+|...|.+++|+|
T Consensus       130 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~  208 (466)
T COG2319         130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP-LSTLAGHTDPVSSLAFSP  208 (466)
T ss_pred             CCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce-EEeeccCCCceEEEEEcC
Confidence            44 99999999998 7888889999999999999999998888885 99999999997443 777788999999999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCeeEE-EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecC
Q 004207          651 SKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMT  729 (768)
Q Consensus       651 ~g~~lLaSgs~Dg~I~iWDl~sg~~i~-~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~  729 (768)
                      ++..++++++.|+.|++||...+..+. .+..+.......|++++..+++++.|+.+++||.......            
T Consensus       209 ~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~------------  276 (466)
T COG2319         209 DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSL------------  276 (466)
T ss_pred             CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcE------------
Confidence            887566666899999999999777777 4554443322279999888888999999999999875430            


Q ss_pred             CCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          730 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       730 ~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                         ...+..|...|.++.|+|++..+++++.|+.+++||
T Consensus       277 ---~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~  312 (466)
T COG2319         277 ---LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWD  312 (466)
T ss_pred             ---EEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence               111146788999999999888888899998899995

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.7e-15  Score=162.08  Aligned_cols=199  Identities=17%  Similarity=0.236  Sum_probs=163.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeEEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCC
Q 004207          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPD  630 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t--~~~~~tl~~h~~~V~sl~fspdg~-~LaTgs~DgtIrVWDl~t~~  630 (768)
                      ..+.|+||.|+|...+|++|+.|++++||.++.  ...+..+..-..+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            356799999999999999999999999997753  445666666678999999999998 89999999999999998866


Q ss_pred             ee-EEEeecCC-CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207          631 YS-LRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI  708 (768)
Q Consensus       631 ~~-~~~~~~h~-~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~I  708 (768)
                      .. +....++. ..+.....++++. +|+..+..|.|.+....+++.+..++..+.|..++|+.++..|++++.+|.|++
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v  370 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV  370 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence            42 22233333 3466778889987 555777799999999999999999999999999999999999999999999999


Q ss_pred             EECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          709 LDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       709 wD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ||++...|.+++.      -.. .        -.-+++|.+.++.|||+||..|.|.|||
T Consensus       371 ~nl~~~~~~~rf~------D~G-~--------v~gts~~~S~ng~ylA~GS~~GiVNIYd  415 (514)
T KOG2055|consen  371 WNLRQNSCLHRFV------DDG-S--------VHGTSLCISLNGSYLATGSDSGIVNIYD  415 (514)
T ss_pred             EecCCcceEEEEe------ecC-c--------cceeeeeecCCCceEEeccCcceEEEec
Confidence            9999987654332      111 1        1236778889999999999999999997

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=8.9e-17  Score=187.78  Aligned_cols=198  Identities=18%  Similarity=0.320  Sum_probs=157.0

Q ss_pred             CCeEEEEEcCCCCE----EEEEeCCCcEEEEECCCC------eEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEE
Q 004207          556 SKVESCHFSPDGKL----LATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVW  624 (768)
Q Consensus       556 ~~I~sl~fSpdg~~----LaSgs~Dg~I~VWdl~t~------~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVW  624 (768)
                      .+.+.++|.+.|..    ||.|..||.|.+||....      ..+.+...|++.|..+.|++. ++.||+|+.||.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            45778999886654    899999999999997652      345667789999999999997 5599999999999999


Q ss_pred             ECCCCCeeEEE-eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC---eeEEEEecCCCE-EEE
Q 004207          625 DTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG---ATQMRFQPRLGR-ILA  699 (768)
Q Consensus       625 Dl~t~~~~~~~-~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~---i~sl~fsp~~~~-lla  699 (768)
                      |+.+.+..... .....+.|.+|+|+..-.++|++++.+|.+.|||+|..+.+-.+.....   +..+.|+|+... +++
T Consensus       145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~  224 (1049)
T KOG0307|consen  145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV  224 (1049)
T ss_pred             ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence            99876543322 1224578999999988889999999999999999998877766654333   778999998765 666


Q ss_pred             EEcCC---eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 004207          700 AAIEN---YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK  768 (768)
Q Consensus       700 gs~Dg---~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IWD  768 (768)
                      ++.|.   .|.+||++....               ...++.+|...|.+|.|++.+ .+|+|++.|+.|.+|+
T Consensus       225 As~dd~~PviqlWDlR~ass---------------P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN  282 (1049)
T KOG0307|consen  225 ASGDDSAPVIQLWDLRFASS---------------PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWN  282 (1049)
T ss_pred             ecCCCCCceeEeecccccCC---------------chhhhcccccceeeeccCCCCchhhhcccCCCCeeEec
Confidence            66554   477777665322               223456899999999999987 8999999999999997

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.68  E-value=4.6e-16  Score=173.11  Aligned_cols=219  Identities=18%  Similarity=0.292  Sum_probs=170.0

Q ss_pred             eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004207          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (768)
Q Consensus       545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg-----~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg  619 (768)
                      |.+++.+.+|...|+|++.+|+++++|+++...     .|++|+..+...+..+.+|.-.|+.++|+||+++|+++|.|.
T Consensus       515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR  594 (764)
T KOG1063|consen  515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR  594 (764)
T ss_pred             chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc
Confidence            456778889999999999999999999997643     589999999988889999999999999999999999999999


Q ss_pred             cEEEEECCCCC---eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC--eeEE---EEecCCCeeEEEEe
Q 004207          620 TVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAG---VFKCQSGATQMRFQ  691 (768)
Q Consensus       620 tIrVWDl~t~~---~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg--~~i~---~~~~~~~i~sl~fs  691 (768)
                      ++.+|......   ......+.|..-|.+++|+|++. .|+|++.|++|++|.....  +.+.   .++....|+.++|.
T Consensus       595 t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~  673 (764)
T KOG1063|consen  595 TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-YFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYL  673 (764)
T ss_pred             eEEeeeeecccchhhhhccccccceEEEEcccCcccc-eeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEee
Confidence            99999875432   22344778999999999999976 4889999999999998876  4443   34456788888887


Q ss_pred             cCC-----CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC----------CEEE
Q 004207          692 PRL-----GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN----------GMVA  756 (768)
Q Consensus       692 p~~-----~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg----------~~La  756 (768)
                      |-.     ..+++|-..|.|.+|........   .++-.|.+... .....+|.+.|+.+.|.|..          ..|+
T Consensus       674 ~~~~~e~~~~vavGle~GeI~l~~~~~~~~~---~~~~~~~~~~~-l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la  749 (764)
T KOG1063|consen  674 PVDHNEKGDVVAVGLEKGEIVLWRRKREHRQ---VTVGTFNLDTR-LCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLA  749 (764)
T ss_pred             ccccccccceEEEEecccEEEEEeccccccc---ccceeeeeccc-cccccChHHhhheeEeccccccccccccceeEEe
Confidence            632     24566778899999986532211   11222222211 12344788899999999752          3679


Q ss_pred             EEECCCcEEEeC
Q 004207          757 SASHDKCVKIWK  768 (768)
Q Consensus       757 Sgs~DG~V~IWD  768 (768)
                      +|++|.+++|++
T Consensus       750 ~~g~D~~vri~n  761 (764)
T KOG1063|consen  750 VGGDDESVRIFN  761 (764)
T ss_pred             eecccceeEEee
Confidence            999999999985

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.68  E-value=1.6e-14  Score=155.92  Aligned_cols=189  Identities=21%  Similarity=0.338  Sum_probs=156.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-----
Q 004207          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----  630 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~-----  630 (768)
                      .-|.|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.+| +|+.|..|..||-+-.+     
T Consensus       247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~e  324 (626)
T KOG2106|consen  247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETE  324 (626)
T ss_pred             eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEecccccccccccc
Confidence            5699999999887 6799999999999998888888777999999999999998655 59999999999842100     


Q ss_pred             -----------------ee-----------------EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeE
Q 004207          631 -----------------YS-----------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA  676 (768)
Q Consensus       631 -----------------~~-----------------~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i  676 (768)
                                       ..                 .....+|......++.+|+.+ .+++|+.|+.+++|+  ..+.+
T Consensus       325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~--~~k~~  401 (626)
T KOG2106|consen  325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN--DHKLE  401 (626)
T ss_pred             CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc--CCcee
Confidence                             00                 012346888899999999965 667999999999999  56777


Q ss_pred             EEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEE
Q 004207          677 GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA  756 (768)
Q Consensus       677 ~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~La  756 (768)
                      .+.....++.++.|+|.+ .+++|+..|...++|.++...+                 ++......+++++|+|+|.+||
T Consensus       402 wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv-----------------~~~~d~~~ls~v~ysp~G~~lA  463 (626)
T KOG2106|consen  402 WTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLV-----------------TIHTDNEQLSVVRYSPDGAFLA  463 (626)
T ss_pred             EEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeE-----------------EEEecCCceEEEEEcCCCCEEE
Confidence            777778999999999998 8999999999999998884432                 2222367899999999999999


Q ss_pred             EEECCCcEEEe
Q 004207          757 SASHDKCVKIW  767 (768)
Q Consensus       757 Sgs~DG~V~IW  767 (768)
                      .|+.|+.|+||
T Consensus       464 vgs~d~~iyiy  474 (626)
T KOG2106|consen  464 VGSHDNHIYIY  474 (626)
T ss_pred             EecCCCeEEEE
Confidence            99999999998

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.67  E-value=8.2e-15  Score=158.08  Aligned_cols=220  Identities=20%  Similarity=0.236  Sum_probs=169.4

Q ss_pred             EEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004207          509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT  588 (768)
Q Consensus       509 latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~  588 (768)
                      +.+|..+|+|.+|..                 .+..  ..+...+|.+.|.|++.-.+|.+|- |+.|..|..||-.-.+
T Consensus       260 viTgDS~G~i~Iw~~-----------------~~~~--~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k  319 (626)
T KOG2106|consen  260 VITGDSGGNILIWSK-----------------GTNR--ISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRK  319 (626)
T ss_pred             EEeecCCceEEEEeC-----------------CCce--EEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccc
Confidence            467888999999932                 1111  2233339999999999999997655 9999999999832100


Q ss_pred             -----------E-----------------------------EEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207          589 -----------V-----------------------------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (768)
Q Consensus       589 -----------~-----------------------------~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t  628 (768)
                                 .                             ..+..+|....+.++.+|+...|+|++.|+.+++|+-  
T Consensus       320 ~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~--  397 (626)
T KOG2106|consen  320 LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND--  397 (626)
T ss_pred             cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccC--
Confidence                       0                             0112358888899999999999999999999999992  


Q ss_pred             CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI  708 (768)
Q Consensus       629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~I  708 (768)
                      .+. +- ..--..++.|++|+|.|  .++.|...|...+.|.++...+........+++++|+|+|.+|++++.|+.|+|
T Consensus       398 ~k~-~w-t~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyi  473 (626)
T KOG2106|consen  398 HKL-EW-TKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYI  473 (626)
T ss_pred             Cce-eE-EEEecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEE
Confidence            222 22 22234689999999998  677899999999999999777776666888999999999999999999999999


Q ss_pred             EECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          709 LDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       709 wD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |.+.........              .-..|..+|+.+.|++|+.+|.+-+-|-.|..|+
T Consensus       474 y~Vs~~g~~y~r--------------~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  474 YRVSANGRKYSR--------------VGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             EEECCCCcEEEE--------------eeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence            988664332110              0012337899999999999999999999999984

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.67  E-value=3.1e-15  Score=164.28  Aligned_cols=196  Identities=17%  Similarity=0.222  Sum_probs=145.7

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      ++.+++++|.|..|++|..+.+...+-            . .....+.+..-.|.|+.|+|...-|+..+..|+++|||+
T Consensus        91 ~D~LLAT~S~D~~VKiW~lp~g~~q~L------------S-ape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~  157 (1012)
T KOG1445|consen   91 ADELLATCSRDEPVKIWKLPRGHSQKL------------S-APEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDI  157 (1012)
T ss_pred             chhhhhcccCCCeeEEEecCCCccccc------------C-CcceeecCCceEEEEeecccCcCceEEeccCceEEEEEc
Confidence            578899999999999997663321100            0 011223344457899999996654555556789999999


Q ss_pred             CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCC-eEEEEEeCCCCeEEEEEeC--
Q 004207          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHPSKEDLLCSCDN--  661 (768)
Q Consensus       585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~-V~slafsp~g~~lLaSgs~--  661 (768)
                      .+.+.+..+.+|.+.|.+..|+.||.+|++++.|+.|+|||.+.....+....+|.+. =..+.|.-+-.+++.+|-.  
T Consensus       158 stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~  237 (1012)
T KOG1445|consen  158 STQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTK  237 (1012)
T ss_pred             ccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhcccchh
Confidence            9999999999999999999999999999999999999999999877778888888653 3446777665667755543  


Q ss_pred             -CCcEEEEECCC-CeeEEEEe--cCCCeeEEEEecCCCEEEEE-EcCCeEEEEECCC
Q 004207          662 -NSEIRYWSINN-GSCAGVFK--CQSGATQMRFQPRLGRILAA-AIENYISILDVET  713 (768)
Q Consensus       662 -Dg~I~iWDl~s-g~~i~~~~--~~~~i~sl~fsp~~~~llag-s~Dg~I~IwD~~t  713 (768)
                       -..|++||.+. +..++++.  ...++.--.|.|+.+.++.+ -.++.|..+.+..
T Consensus       238 R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d  294 (1012)
T KOG1445|consen  238 RIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQD  294 (1012)
T ss_pred             hheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecC
Confidence             35789999987 34555554  35566666789998875544 4677888877654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.67  E-value=4.1e-15  Score=151.22  Aligned_cols=200  Identities=21%  Similarity=0.306  Sum_probs=154.2

Q ss_pred             cCCCCCeEEEEEcCCCC-----EEEEEeCCCcEEEEECCC--CeEE--EEe-----ccCCCCEEEEEEcC-CCCEEEEEe
Q 004207          552 PASTSKVESCHFSPDGK-----LLATGGHDKKAVLWCTES--FTVK--STL-----EEHTQWITDVRFSP-SLSRLATSS  616 (768)
Q Consensus       552 ~~H~~~I~sl~fSpdg~-----~LaSgs~Dg~I~VWdl~t--~~~~--~tl-----~~h~~~V~sl~fsp-dg~~LaTgs  616 (768)
                      ..|.-+++.+.|.|+..     +|||++  -.+++|.+..  .+..  ..+     ..+..++++..|+. +.++|.|+|
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            37889999999999763     566654  3799998863  2211  111     23567899999987 678999999


Q ss_pred             CCCcEEEEECCCCC--eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEE---ec-CCCeeEEEE
Q 004207          617 ADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KC-QSGATQMRF  690 (768)
Q Consensus       617 ~DgtIrVWDl~t~~--~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~---~~-~~~i~sl~f  690 (768)
                      -|-|+.|||++++.  .....+.+|...|..|+|...+..+|++++.||.||+||+|.-+-...+   .. ..+...++|
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence            99999999999862  2456778899999999999988999999999999999999975433222   22 456778899


Q ss_pred             ecCCCE-EEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEe
Q 004207          691 QPRLGR-ILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIW  767 (768)
Q Consensus       691 sp~~~~-llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IW  767 (768)
                      ++.... +++-. ....|.|.|++...               ..+..+..|.+.|+.++|.|.. ..|+|+|+|..+.||
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P~---------------tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliW  315 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVPC---------------TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIW  315 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCCC---------------cceehhhcCcccccceEecCCCCceeeecCCcceEEEE
Confidence            886655 44433 34568888887532               2344677999999999999976 689999999999999


Q ss_pred             C
Q 004207          768 K  768 (768)
Q Consensus       768 D  768 (768)
                      |
T Consensus       316 D  316 (364)
T KOG0290|consen  316 D  316 (364)
T ss_pred             e
Confidence            7

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.66  E-value=6.2e-15  Score=155.17  Aligned_cols=196  Identities=18%  Similarity=0.271  Sum_probs=158.0

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWC  583 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd-g~~LaSgs~Dg~I~VWd  583 (768)
                      ++..||+||.|.+|.+|..++....++..            .++..+.+|...|--+.|+|. .+.|++++.|.+|.+||
T Consensus        93 nD~vIASgSeD~~v~vW~IPe~~l~~~lt------------epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWn  160 (472)
T KOG0303|consen   93 NDCVIASGSEDTKVMVWQIPENGLTRDLT------------EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWN  160 (472)
T ss_pred             CCceeecCCCCceEEEEECCCcccccCcc------------cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEe
Confidence            57789999999999999888775333221            467888999999999999995 45789999999999999


Q ss_pred             CCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCC-CeEEEEEeCCCCeEEEEEe--
Q 004207          584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDLLCSCD--  660 (768)
Q Consensus       584 l~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~-~V~slafsp~g~~lLaSgs--  660 (768)
                      +.+++.+.++. |.+-|+++.|+.||.+|+|.+.|+.|||||.++++. +..-.+|.+ .-..+.|..++. ++.||-  
T Consensus       161 v~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~-v~e~~~heG~k~~Raifl~~g~-i~tTGfsr  237 (472)
T KOG0303|consen  161 VGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV-VSEGVAHEGAKPARAIFLASGK-IFTTGFSR  237 (472)
T ss_pred             ccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE-eeecccccCCCcceeEEeccCc-eeeecccc
Confidence            99999998987 999999999999999999999999999999999886 544466754 344566777776 665553  


Q ss_pred             -CCCcEEEEECCCCe---eEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCce
Q 004207          661 -NNSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQV  715 (768)
Q Consensus       661 -~Dg~I~iWDl~sg~---~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~  715 (768)
                       .+..+-+||-.+-+   ....+....+|.---|.++...++.++ .|+.|+.|.+....
T Consensus       238 ~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  238 MSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             ccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence             46789999876533   344555667777777899888766555 79999999987764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.65  E-value=1.3e-14  Score=149.47  Aligned_cols=242  Identities=17%  Similarity=0.238  Sum_probs=173.5

Q ss_pred             CCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEec-CCCCCeEEEEEc-------CCCCEEEEEeC
Q 004207          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFS-------PDGKLLATGGH  575 (768)
Q Consensus       504 ~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~I~sl~fS-------pdg~~LaSgs~  575 (768)
                      +.+..|.+-+.|..+++|..+.+...+..-..       ..+.....++ .....|+..+|-       |+..++++.+.
T Consensus        59 PDGSciL~~sedn~l~~~nlP~dlys~~~~~~-------~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   59 PDGSCILSLSEDNCLNCWNLPFDLYSKKADGP-------LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             CCCceEEeecccCeeeEEecChhhcccCCCCc-------cccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            35567888889999999977655332221111       1111111111 123457888885       57789999999


Q ss_pred             CCcEEEEECCCCeEEEEecc--CCC---CEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCCe-eEEEe-----ecCCCCe
Q 004207          576 DKKAVLWCTESFTVKSTLEE--HTQ---WITDVRFSPSLSRLATSSADRTVRVWDT-ENPDY-SLRTF-----TGHSTTV  643 (768)
Q Consensus       576 Dg~I~VWdl~t~~~~~tl~~--h~~---~V~sl~fspdg~~LaTgs~DgtIrVWDl-~t~~~-~~~~~-----~~h~~~V  643 (768)
                      |.-|++||.-+++....+..  |..   ...+++|+|||..|++| ...+|+|||+ +.+.. .+...     .+..+.|
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii  210 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII  210 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence            99999999999998877643  332   34689999999999876 7789999999 44432 12222     2336789


Q ss_pred             EEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCceEeeecc
Q 004207          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQ  721 (768)
Q Consensus       644 ~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~-Dg~I~IwD~~t~~~~~~~~  721 (768)
                      .|++|+|....++++|+....+-||.-....++..+.. .++|+.++|.++|+.|++|+. |..|..||++.....    
T Consensus       211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p----  286 (406)
T KOG2919|consen  211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP----  286 (406)
T ss_pred             eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch----
Confidence            99999999888999999888998988877777776654 678999999999999999985 788999999874321    


Q ss_pred             eeEEeecCCCceEEeccCCC---CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 TLELWNMTENKTLTLSAHDK---LVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 ~I~iwd~~~~~~~~l~~H~~---~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                 +..+..|.+   --.-+...|++.+|++|+.||.|++||
T Consensus       287 -----------v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwd  325 (406)
T KOG2919|consen  287 -----------VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWD  325 (406)
T ss_pred             -----------hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEe
Confidence                       112233433   112244568899999999999999997

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.64  E-value=2.3e-15  Score=166.31  Aligned_cols=201  Identities=19%  Similarity=0.300  Sum_probs=149.7

Q ss_pred             EEEEcC---CCCEEEEEeCCCcEEEEECCCCeEE------EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004207          560 SCHFSP---DGKLLATGGHDKKAVLWCTESFTVK------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (768)
Q Consensus       560 sl~fSp---dg~~LaSgs~Dg~I~VWdl~t~~~~------~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~  630 (768)
                      ++.|++   ....|+.+..||.|.++|.+.....      ..+..|...|.++.|.|....|++++.|.++++||++..+
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~  133 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR  133 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence            366766   2347999999999999998754332      4566899999999999977789999999999999999876


Q ss_pred             ee-EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe--------------------eE-------EEEe-c
Q 004207          631 YS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--------------------CA-------GVFK-C  681 (768)
Q Consensus       631 ~~-~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~--------------------~i-------~~~~-~  681 (768)
                      .. ...+.+|.+.|.+++|++....+||+|+.||.|.|||++...                    ..       +..+ .
T Consensus       134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~  213 (720)
T KOG0321|consen  134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA  213 (720)
T ss_pred             eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence            42 235889999999999999999999999999999999997322                    00       0000 0


Q ss_pred             CCCeeE---EEEecCCCEEEEEEc-CCeEEEEECCCceEeeecceeEEeecCCCceEEeccC---CCCeeEEEEeCCCCE
Q 004207          682 QSGATQ---MRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAH---DKLVSSLAASTVNGM  754 (768)
Q Consensus       682 ~~~i~s---l~fsp~~~~llags~-Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H---~~~I~sla~spdg~~  754 (768)
                      ...|.+   +.+..|...|++++. |+.|+|||++...+......+.+        ..+..|   .-.+.++.....|.+
T Consensus       214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~--------~~~~t~skrs~G~~nL~lDssGt~  285 (720)
T KOG0321|consen  214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS--------DKYPTHSKRSVGQVNLILDSSGTY  285 (720)
T ss_pred             cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc--------cCccCcccceeeeEEEEecCCCCe
Confidence            112333   445555677887776 99999999999776554432221        111222   335788888888899


Q ss_pred             EEEEECCCcEEEeC
Q 004207          755 VASASHDKCVKIWK  768 (768)
Q Consensus       755 LaSgs~DG~V~IWD  768 (768)
                      |++.+.|+.|++||
T Consensus       286 L~AsCtD~sIy~yn  299 (720)
T KOG0321|consen  286 LFASCTDNSIYFYN  299 (720)
T ss_pred             EEEEecCCcEEEEe
Confidence            98888899999996

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.64  E-value=1.9e-13  Score=147.66  Aligned_cols=206  Identities=31%  Similarity=0.497  Sum_probs=163.0

Q ss_pred             eEEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEE
Q 004207          546 TEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRV  623 (768)
Q Consensus       546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~-Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~-~LaTgs~DgtIrV  623 (768)
                      .....+..|...|.+++|+|++.++++++. |+.+++|++..++.+..+.+|...|.+++|+|++. ++++++.|+.|++
T Consensus       146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~  225 (466)
T COG2319         146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL  225 (466)
T ss_pred             eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence            456777899999999999999999888885 99999999999889999999999999999999987 5556599999999


Q ss_pred             EECCCCCeeEE-EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee-EEEE-ecCCCeeEEEEecCCCEEEEE
Q 004207          624 WDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-KCQSGATQMRFQPRLGRILAA  700 (768)
Q Consensus       624 WDl~t~~~~~~-~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~-i~~~-~~~~~i~sl~fsp~~~~llag  700 (768)
                      ||...+.. +. .+.+|...+ ...|++++ .++++++.|+.+++||++.... +..+ .+...+.++.|.|++..++++
T Consensus       226 wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  302 (466)
T COG2319         226 WDLSTGKL-LRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG  302 (466)
T ss_pred             EECCCCcE-EeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence            99886554 44 678887775 44899998 4666899999999999987654 4444 335678999999988888888


Q ss_pred             EcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEE-ECCCcEEEeC
Q 004207          701 AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK  768 (768)
Q Consensus       701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSg-s~DG~V~IWD  768 (768)
                      +.|+.+.+||..+........              ...|...|..+.|.+++..++.+ ..|+.+.+|+
T Consensus       303 ~~d~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  357 (466)
T COG2319         303 SSDGTVRLWDLETGKLLSSLT--------------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD  357 (466)
T ss_pred             eCCCcEEEEEcCCCceEEEee--------------ecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence            888889999887765432111              23677778999984332455555 6788888885

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=5.1e-14  Score=156.94  Aligned_cols=207  Identities=17%  Similarity=0.246  Sum_probs=162.8

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEeccC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~-~~~tl~~h-~~~V~sl~fspdg~~LaTgs~DgtIrVWDl  626 (768)
                      +.+.--..+|+|++|+.+.+.||.+-.||.|-||++...- +..++.++ ...|.+++|++ +..|++.+.+|.|.-||+
T Consensus        19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl   97 (691)
T KOG2048|consen   19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDL   97 (691)
T ss_pred             EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEec
Confidence            3334445679999999999999999999999999998743 33455555 45799999994 567889999999999999


Q ss_pred             CCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEEEEcC
Q 004207          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIE  703 (768)
Q Consensus       627 ~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~llags~D  703 (768)
                      .+.+. +..+....+.|++++.+|.+. .++.|++||.+.++++..+++......   .+.+.++.|+|++..+++|+.|
T Consensus        98 ~~lk~-~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D  175 (691)
T KOG2048|consen   98 HTLKQ-KYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID  175 (691)
T ss_pred             ccCce-eEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence            98876 666777789999999999976 566777899888999988887765443   4779999999999999999999


Q ss_pred             CeEEEEECCCceEeeecceeEEeecCCCceEEecc-CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          704 NYISILDVETQVCRLKLQTLELWNMTENKTLTLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       704 g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~-H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |.|++||..++...+      +-++.   ...+.. ....|++|.|-. ...|++|..-|+|++||
T Consensus       176 g~Iriwd~~~~~t~~------~~~~~---~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd  231 (691)
T KOG2048|consen  176 GVIRIWDVKSGQTLH------IITMQ---LDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWD  231 (691)
T ss_pred             ceEEEEEcCCCceEE------Eeeec---ccccccCCceEEEEEEEee-cCcEEEecCCceEEEEc
Confidence            999999998876544      11111   111111 234578888874 45799999999999998

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.63  E-value=2.7e-14  Score=156.93  Aligned_cols=157  Identities=20%  Similarity=0.351  Sum_probs=129.0

Q ss_pred             CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEC
Q 004207          556 SKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDT  626 (768)
Q Consensus       556 ~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~-------~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl  626 (768)
                      ..|+.++|.| |...||+++.||.|++|.+..+       +....+..|...|++++|+|- ...|+++++|-+|++||+
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl  707 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL  707 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence            4599999999 8889999999999999998753       345678889999999999994 678999999999999999


Q ss_pred             CCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe-eEEEEec--CCCeeEEEEecCCCEEEEEEcC
Q 004207          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC--QSGATQMRFQPRLGRILAAAIE  703 (768)
Q Consensus       627 ~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~-~i~~~~~--~~~i~sl~fsp~~~~llags~D  703 (768)
                      .+.+. ...+.+|.+.|.+++|+|+|. .+++.+.||+|++|.-++++ .++.-++  ...-..+.|.-++.++++.+.|
T Consensus       708 ~~~~~-~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd  785 (1012)
T KOG1445|consen  708 ANAKL-YSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD  785 (1012)
T ss_pred             hhhhh-hheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence            98775 677889999999999999987 66688889999999998754 3333332  2334568899999998888765


Q ss_pred             C----eEEEEECCCc
Q 004207          704 N----YISILDVETQ  714 (768)
Q Consensus       704 g----~I~IwD~~t~  714 (768)
                      .    .|.+||..+.
T Consensus       786 k~SeRQv~~Y~Aq~l  800 (1012)
T KOG1445|consen  786 KSSERQVQMYDAQTL  800 (1012)
T ss_pred             ccchhhhhhhhhhhc
Confidence            4    4778887664

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.7e-15  Score=164.49  Aligned_cols=220  Identities=15%  Similarity=0.271  Sum_probs=159.4

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCCEEEEEEcC--CCCEEEEEeCCCcEEE
Q 004207          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVRV  623 (768)
Q Consensus       547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl-~~h~~~V~sl~fsp--dg~~LaTgs~DgtIrV  623 (768)
                      ....+.+|++.|.|+.|+.||.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-|  +.+++++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            34567899999999999999999999999999999999888877766 68999999999998  4678999999999999


Q ss_pred             EECCC---------CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe-eEEEEec----------CC
Q 004207          624 WDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC----------QS  683 (768)
Q Consensus       624 WDl~t---------~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~-~i~~~~~----------~~  683 (768)
                      ||+..         .+.....+.+|...|..|+..|++.+.|.++++||+|+-+|++... |......          --
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            99985         2334567788999999999999998999999999999999998632 1111100          12


Q ss_pred             CeeEEEEecCCCE-EEEEEcCCeEEEEECCCceEeee-c-----------ceeEEeecCCCceEEecc-CC---CCeeEE
Q 004207          684 GATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLK-L-----------QTLELWNMTENKTLTLSA-HD---KLVSSL  746 (768)
Q Consensus       684 ~i~sl~fsp~~~~-llags~Dg~I~IwD~~t~~~~~~-~-----------~~I~iwd~~~~~~~~l~~-H~---~~I~sl  746 (768)
                      ...++.++|...+ |++|+.|-..++||.+....... .           .++..|....  +....+ ..   ..++-+
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h--lkn~~gn~~~~~~~~t~v  279 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH--LKNSQGNLDRYITCCTYV  279 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc--ccCcccccccceeeeEEE
Confidence            3567889987655 77788899999999543211100 0           0122221110  000001 01   125678


Q ss_pred             EEeCCCCEEEEEECCCcEEEeC
Q 004207          747 AASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       747 a~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .|+|+|.-|++.-....|++||
T Consensus       280 tfnpNGtElLvs~~gEhVYlfd  301 (758)
T KOG1310|consen  280 TFNPNGTELLVSWGGEHVYLFD  301 (758)
T ss_pred             EECCCCcEEEEeeCCeEEEEEe
Confidence            8999997555554445787775

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.7e-14  Score=151.14  Aligned_cols=261  Identities=13%  Similarity=0.125  Sum_probs=177.3

Q ss_pred             ccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEe-cCCCCCeEEEEEcCCCCEEEEE
Q 004207          495 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATG  573 (768)
Q Consensus       495 ~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l-~~H~~~I~sl~fSpdg~~LaSg  573 (768)
                      -.+....+...+++|++|+.|..+++|........+             ..+++... ..|...|.|++|.....+|++|
T Consensus        57 GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k-------------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG  123 (609)
T KOG4227|consen   57 GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK-------------TPKPIGVMEHPHRSNIFSLEFDLENRFLYSG  123 (609)
T ss_pred             cccceeeeccCCeEEeecCCcceeeeechHHHHhhc-------------CCCCceeccCccccceEEEEEccCCeeEecC
Confidence            345566677789999999999999999543321110             01122222 3466899999999999999999


Q ss_pred             eCCCcEEEEECCCCeEEEEecc--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee--EEEeecCCCCeEEEEEe
Q 004207          574 GHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFH  649 (768)
Q Consensus       574 s~Dg~I~VWdl~t~~~~~tl~~--h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~--~~~~~~h~~~V~slafs  649 (768)
                      +.+++|.+.|+++.+.+..+..  ..+.|+.+..+|..+.|++.+.+|.|.+||.+.....  +...........++.|+
T Consensus       124 ~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~  203 (609)
T KOG4227|consen  124 ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFH  203 (609)
T ss_pred             CCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeec
Confidence            9999999999999888776632  2358999999999999999999999999999864422  23334455678899999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCee-EEEEe------c-CCCeeEEEEecCCCE-------------------------
Q 004207          650 PSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK------C-QSGATQMRFQPRLGR-------------------------  696 (768)
Q Consensus       650 p~g~~lLaSgs~Dg~I~iWDl~sg~~-i~~~~------~-~~~i~sl~fsp~~~~-------------------------  696 (768)
                      |....+|++.+..+-+.+||++.... +....      . ......+.|+|.|+.                         
T Consensus       204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~  283 (609)
T KOG4227|consen  204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS  283 (609)
T ss_pred             CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence            99999999999999999999974211 00000      0 011123334444333                         


Q ss_pred             -----------------------EEEEEcCCeEEEEECCCceEeeecceeEE------ee-cCCCceEEeccCCCCeeEE
Q 004207          697 -----------------------ILAAAIENYISILDVETQVCRLKLQTLEL------WN-MTENKTLTLSAHDKLVSSL  746 (768)
Q Consensus       697 -----------------------llags~Dg~I~IwD~~t~~~~~~~~~I~i------wd-~~~~~~~~l~~H~~~I~sl  746 (768)
                                             +++|+.+-.|++|.+........+..|--      -. +..+....+.+|...++.|
T Consensus       284 D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV  363 (609)
T KOG4227|consen  284 DHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV  363 (609)
T ss_pred             cCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence                                   44444444455554432211110000000      00 1123345788999999999


Q ss_pred             EEeCCCCEEEEEECCCcEEEeC
Q 004207          747 AASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       747 a~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .|++...+|++.+....++||.
T Consensus       364 RF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  364 RFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             eecCCcceEeccchhhheeccc
Confidence            9999999999999999999993

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=6.1e-15  Score=161.76  Aligned_cols=205  Identities=15%  Similarity=0.266  Sum_probs=159.6

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~D---g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      ...-.|...|..+.|+..|.||++...+   ..|.|+.+...+...-|....+.|.++.|+|...+|++++ -..|+|||
T Consensus       515 ~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYd  593 (733)
T KOG0650|consen  515 CIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYD  593 (733)
T ss_pred             EEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEe
Confidence            4555788899999999999999988654   4699999987776666655667899999999988888876 45799999


Q ss_pred             CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC-eeEEEEec-CCCeeEEEEecCCCEEEEEEcC
Q 004207          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKC-QSGATQMRFQPRLGRILAAAIE  703 (768)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg-~~i~~~~~-~~~i~sl~fsp~~~~llags~D  703 (768)
                      +..... +..+......|.+++.||.|.++| .|+.|+.++.||+.-. +....+.. ...+++|+|++.-..+++|+.|
T Consensus       594 L~kqel-vKkL~tg~kwiS~msihp~GDnli-~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD  671 (733)
T KOG0650|consen  594 LSKQEL-VKKLLTGSKWISSMSIHPNGDNLI-LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD  671 (733)
T ss_pred             hhHHHH-HHHHhcCCeeeeeeeecCCCCeEE-EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence            987543 444444556799999999999877 6788999999999754 44555554 4568999999998889999999


Q ss_pred             CeEEEEECCCceEeeecceeEEeecCCCc----eEEeccCCCC----eeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          704 NYISILDVETQVCRLKLQTLELWNMTENK----TLTLSAHDKL----VSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       704 g~I~IwD~~t~~~~~~~~~I~iwd~~~~~----~~~l~~H~~~----I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      +++.||.-.-..           |+..+.    +..+.+|...    |..+.|+|...+|++++.||+|++|
T Consensus       672 gtv~Vfhg~VY~-----------Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  672 GTVIVFHGMVYN-----------DLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CcEEEEeeeeeh-----------hhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            999988542211           121111    1245577654    8999999999999999999999998

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=8.8e-14  Score=138.51  Aligned_cols=202  Identities=12%  Similarity=0.155  Sum_probs=141.0

Q ss_pred             ccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 004207          500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA  579 (768)
Q Consensus       500 ~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I  579 (768)
                      .+..+...|+++|+.+|.|.++....-..+..         .......+....+|.++|+.++|.  ..+|++|+ ||.|
T Consensus        16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V   83 (325)
T KOG0649|consen   16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLV   83 (325)
T ss_pred             HhhCCcceEEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc-CceE
Confidence            34567788999999999999984433211111         111123455568999999999997  45677765 5999


Q ss_pred             EEEECCCCeE------EEEe--ccCC-----CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEE
Q 004207          580 VLWCTESFTV------KSTL--EEHT-----QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (768)
Q Consensus       580 ~VWdl~t~~~------~~tl--~~h~-----~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sl  646 (768)
                      +-|.......      +...  .-|.     -.|+++...|..+-+++++.|+.++-||+++++. .+.+.+|...|.++
T Consensus        84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i-~r~~rGHtDYvH~v  162 (325)
T KOG0649|consen   84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI-QREYRGHTDYVHSV  162 (325)
T ss_pred             EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE-EEEEcCCcceeeee
Confidence            9997654221      1111  1122     3588999999877788888999999999999886 89999999999999


Q ss_pred             EEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC-----------eeEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004207          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----------ATQMRFQPRLGRILAAAIENYISILDVETQV  715 (768)
Q Consensus       647 afsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~-----------i~sl~fsp~~~~llags~Dg~I~IwD~~t~~  715 (768)
                      .--.....+| +|++||++++||.++++++..+.....           |.+++.+.  .++++|+ ...+.+|.++..+
T Consensus       163 v~R~~~~qil-sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e--dWlvCGg-Gp~lslwhLrsse  238 (325)
T KOG0649|consen  163 VGRNANGQIL-SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE--DWLVCGG-GPKLSLWHLRSSE  238 (325)
T ss_pred             eecccCccee-ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC--ceEEecC-CCceeEEeccCCC
Confidence            8844434344 999999999999999999888764111           33444443  3555544 4557778777765


Q ss_pred             Eee
Q 004207          716 CRL  718 (768)
Q Consensus       716 ~~~  718 (768)
                      +..
T Consensus       239 ~t~  241 (325)
T KOG0649|consen  239 STC  241 (325)
T ss_pred             ceE
Confidence            543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.61  E-value=1.2e-14  Score=149.69  Aligned_cols=230  Identities=15%  Similarity=0.206  Sum_probs=166.1

Q ss_pred             CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCC---CeEEEEEcCCCCEEEEEeC
Q 004207          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGH  575 (768)
Q Consensus       499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~---~I~sl~fSpdg~~LaSgs~  575 (768)
                      .....+...++++.+.|.-|++|+.-++...             ..+..    -.|-+   ...|++|+|||..|++| .
T Consensus       116 M~s~qP~t~l~a~ssr~~PIh~wdaftG~lr-------------aSy~~----ydh~de~taAhsL~Fs~DGeqlfaG-y  177 (406)
T KOG2919|consen  116 MKSDQPSTNLFAVSSRDQPIHLWDAFTGKLR-------------ASYRA----YDHQDEYTAAHSLQFSPDGEQLFAG-Y  177 (406)
T ss_pred             cccCCCccceeeeccccCceeeeeccccccc-------------cchhh----hhhHHhhhhheeEEecCCCCeEeec-c
Confidence            4445667778888888888888866544210             01111    12222   35689999999999877 5


Q ss_pred             CCcEEEEEC-CCCeEE--E-Ee----ccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEE
Q 004207          576 DKKAVLWCT-ESFTVK--S-TL----EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (768)
Q Consensus       576 Dg~I~VWdl-~t~~~~--~-tl----~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sl  646 (768)
                      ...|+|||+ +.++..  . ++    .+..+.|.|++|+|. .+.+++++...++-||.-.... ++..+.+|.+.|+.+
T Consensus       178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-pl~llggh~gGvThL  256 (406)
T KOG2919|consen  178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-PLQLLGGHGGGVTHL  256 (406)
T ss_pred             cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC-ceeeecccCCCeeeE
Confidence            678999998 444321  1 11    233678999999995 5689999999999999877655 478888999999999


Q ss_pred             EEeCCCCeEEEEEeCCCcEEEEECCCC-eeEEEEecCCC----eeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc
Q 004207          647 DFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSG----ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (768)
Q Consensus       647 afsp~g~~lLaSgs~Dg~I~iWDl~sg-~~i~~~~~~~~----i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~  721 (768)
                      .|+++|+.++.-+..|-.|.+||+|.. .++..+..+..    -.-+...|.+++|++|+.||.|++||+.+...     
T Consensus       257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn-----  331 (406)
T KOG2919|consen  257 QWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN-----  331 (406)
T ss_pred             EeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC-----
Confidence            999999988866667889999999863 34444443222    12345578899999999999999999987211     


Q ss_pred             eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 004207          722 TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK  762 (768)
Q Consensus       722 ~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG  762 (768)
                                .+..+..|+..|+.|+++|--.++++++...
T Consensus       332 ----------~~sv~~~~sd~vNgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  332 ----------EVSVTGNYSDTVNGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             ----------cccccccccccccceecCcccceeeeccCce
Confidence                      1234457888899999999888888877543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=8.2e-15  Score=156.02  Aligned_cols=192  Identities=23%  Similarity=0.230  Sum_probs=149.7

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee-
Q 004207          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-  637 (768)
Q Consensus       559 ~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~-  637 (768)
                      .+++|+.+|..|++++.||+++||+......+.....|...|.++.|+||+++|++.+.| ..+||+++++.. +.... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-LARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-hhhcCC
Confidence            689999999999999999999999988888888888899999999999999999999999 899999998853 33322 


Q ss_pred             -cCCCCeEEEEEeCCC---C-eEEEEEeCCCcEEEEECCCCee------EEEEecCCCeeEEEEecCCCEEEEEEcCCeE
Q 004207          638 -GHSTTVMSLDFHPSK---E-DLLCSCDNNSEIRYWSINNGSC------AGVFKCQSGATQMRFQPRLGRILAAAIENYI  706 (768)
Q Consensus       638 -~h~~~V~slafsp~g---~-~lLaSgs~Dg~I~iWDl~sg~~------i~~~~~~~~i~sl~fsp~~~~llags~Dg~I  706 (768)
                       .-...+..+.|.-++   . ++++.-...+.|+.||+.....      ...+.....|++++.+++|++++.|+.||.|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence             223345667777664   2 2333334456677777653222      1222235689999999999999999999999


Q ss_pred             EEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          707 SILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       707 ~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      .||+..+..+....+               ..|...|+.|.|+|+.+++++.+.|..+.|.
T Consensus       306 ai~~~~~lq~~~~vk---------------~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~  351 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVK---------------EAHLGFVTGLTFSPDSRYLASVSSDNEAAVT  351 (398)
T ss_pred             EEEEeceeeeeEeeh---------------hhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence            999988766543322               3799999999999999999999888877653

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=1.5e-14  Score=148.42  Aligned_cols=152  Identities=18%  Similarity=0.297  Sum_probs=120.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEE
Q 004207          600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF  679 (768)
Q Consensus       600 V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~  679 (768)
                      ..|+.|++.|.+||+|+.||.|.|||+.+... .+.+.+|..+|++++|+++|+.+| |++.|..|.+||+..|.+++.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i-ar~lsaH~~pi~sl~WS~dgr~Ll-tsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI-ARMLSAHVRPITSLCWSRDGRKLL-TSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccch-hhhhhccccceeEEEecCCCCEee-eecCCceeEEEeccCCCceeEE
Confidence            68999999999999999999999999998663 788999999999999999988555 9999999999999999988888


Q ss_pred             ecCCCeeEEEEecC-----------------------------------------------CCEEEEEEcCCeEEEEECC
Q 004207          680 KCQSGATQMRFQPR-----------------------------------------------LGRILAAAIENYISILDVE  712 (768)
Q Consensus       680 ~~~~~i~sl~fsp~-----------------------------------------------~~~llags~Dg~I~IwD~~  712 (768)
                      ....+|..+.|+|.                                               |+++++|...|.+.+||..
T Consensus       104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~  183 (405)
T KOG1273|consen  104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE  183 (405)
T ss_pred             EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence            77666655555553                                               4455555555555555555


Q ss_pred             CceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          713 TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       713 t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +.+++..++              + .....|..+.|+-.|++|+.-+.|..|+.|+
T Consensus       184 t~e~vas~r--------------i-ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye  224 (405)
T KOG1273|consen  184 TLECVASFR--------------I-TSVQAIKQIIVSRKGRFLIINTSDRVIRTYE  224 (405)
T ss_pred             hheeeeeee--------------e-chheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence            554443322              0 0125688899999999999999999999985

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.61  E-value=2.9e-16  Score=177.09  Aligned_cols=217  Identities=22%  Similarity=0.358  Sum_probs=170.9

Q ss_pred             eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      +.++.+.+|...|+|+.|...|.+|++|+.|..|+||..++..++..+.+|.+.|+.++.+.+..++++++.|..|+||-
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            34567789999999999999999999999999999999999999999999999999999999989999999999999999


Q ss_pred             CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEE-----EecCCCeeEEEEecCCCEEEEE
Q 004207          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-----FKCQSGATQMRFQPRLGRILAA  700 (768)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~-----~~~~~~i~sl~fsp~~~~llag  700 (768)
                      +.++.. +..+.+|.+.|++|+|+|.-     +.+.||++++||.+-...+..     +....-+.++.|-..+..++++
T Consensus       261 l~~~~p-vsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg  334 (1113)
T KOG0644|consen  261 LPDGAP-VSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG  334 (1113)
T ss_pred             cCCCch-HHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence            998764 88899999999999999863     677899999999982222211     1123345566666666667777


Q ss_pred             EcCCeEEEEECCCceE-------------------ee-ecceeEEeecCCCceE-EeccCCCCeeEEEEeCCCC-EEEEE
Q 004207          701 AIENYISILDVETQVC-------------------RL-KLQTLELWNMTENKTL-TLSAHDKLVSSLAASTVNG-MVASA  758 (768)
Q Consensus       701 s~Dg~I~IwD~~t~~~-------------------~~-~~~~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~-~LaSg  758 (768)
                      +.|+.-..|.+.-..+                   .. ....+.+|++.++... .+.+|...+..+.++|-.. .-.++
T Consensus       335 s~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msa  414 (1113)
T KOG0644|consen  335 SRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSA  414 (1113)
T ss_pred             cCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhc
Confidence            7776555443321100                   00 0114667888777655 4568999999999999775 45688


Q ss_pred             ECCCcEEEeC
Q 004207          759 SHDKCVKIWK  768 (768)
Q Consensus       759 s~DG~V~IWD  768 (768)
                      +.||.+.|||
T Consensus       415 g~dgst~iwd  424 (1113)
T KOG0644|consen  415 GYDGSTIIWD  424 (1113)
T ss_pred             cCCCceEeee
Confidence            9999999997

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.60  E-value=5.4e-13  Score=145.83  Aligned_cols=241  Identities=12%  Similarity=0.198  Sum_probs=160.2

Q ss_pred             EEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC-C
Q 004207          509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE-S  586 (768)
Q Consensus       509 latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs-~Dg~I~VWdl~-t  586 (768)
                      .++...|+.|.+|.....  +              .+..+..+. +.+....++++|++++|++++ .++.|.+|+++ +
T Consensus         5 y~~~~~~~~I~~~~~~~~--g--------------~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~   67 (330)
T PRK11028          5 YIASPESQQIHVWNLNHE--G--------------ALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD   67 (330)
T ss_pred             EEEcCCCCCEEEEEECCC--C--------------ceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCC
Confidence            344567899999965321  1              122333333 234577899999999887664 57889999986 3


Q ss_pred             CeE--EEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCe---eEEEeecCCCCeEEEEEeCCCCeEEEEEe
Q 004207          587 FTV--KSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (768)
Q Consensus       587 ~~~--~~tl~~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~t~~~---~~~~~~~h~~~V~slafsp~g~~lLaSgs  660 (768)
                      ++.  +.... .......++|+|++++|++++. ++.|.+|++++...   .+..+. +.....+++++|+++.+++++.
T Consensus        68 g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~  145 (330)
T PRK11028         68 GALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCL  145 (330)
T ss_pred             CceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeC
Confidence            332  22222 2335678999999999888875 78999999974321   122222 3345678899999998888888


Q ss_pred             CCCcEEEEECCCCeeEE-------EEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCC--ce--Eeeec--------
Q 004207          661 NNSEIRYWSINNGSCAG-------VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET--QV--CRLKL--------  720 (768)
Q Consensus       661 ~Dg~I~iWDl~sg~~i~-------~~~~~~~i~sl~fsp~~~~llags~-Dg~I~IwD~~t--~~--~~~~~--------  720 (768)
                      .++.|.+||+.+...+.       .+........+.|+|++.+++++.. ++.|.+||+..  +.  ....+        
T Consensus       146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~  225 (330)
T PRK11028        146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS  225 (330)
T ss_pred             CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence            88999999997632221       1223455678999999999988876 89999999863  11  11000        


Q ss_pred             ------------------------ceeEEeecCCCc-eEEeccC---CCCeeEEEEeCCCCEEEEEEC-CCcEEEeC
Q 004207          721 ------------------------QTLELWNMTENK-TLTLSAH---DKLVSSLAASTVNGMVASASH-DKCVKIWK  768 (768)
Q Consensus       721 ------------------------~~I~iwd~~~~~-~~~l~~H---~~~I~sla~spdg~~LaSgs~-DG~V~IWD  768 (768)
                                              ..|.+|++.... ..++..|   ......++|+|+|++|+++.. +++|.||+
T Consensus       226 ~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~  302 (330)
T PRK11028        226 DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE  302 (330)
T ss_pred             CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence                                    056666654321 2222222   124568899999999998875 89999984

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.59  E-value=1.1e-14  Score=150.30  Aligned_cols=214  Identities=18%  Similarity=0.325  Sum_probs=166.7

Q ss_pred             ecCCCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCe---EEEEe--ccCCCCEEEEEEcCC----CCEEEEEe
Q 004207          551 IPASTSKVESCHFSP-----DGKLLATGGHDKKAVLWCTESFT---VKSTL--EEHTQWITDVRFSPS----LSRLATSS  616 (768)
Q Consensus       551 l~~H~~~I~sl~fSp-----dg~~LaSgs~Dg~I~VWdl~t~~---~~~tl--~~h~~~V~sl~fspd----g~~LaTgs  616 (768)
                      ...|+.+|..++|++     +-..+++++. .+|.+|......   .+..+  ..|....+.++|+-+    ..+||.++
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            457889999999985     2235666665 478888765432   33333  236777888999764    45789999


Q ss_pred             CCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCeeEEEEec
Q 004207          617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRFQP  692 (768)
Q Consensus       617 ~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~----~~~i~sl~fsp  692 (768)
                      .-|.|+|.|+.++.. ...+.+|...|..|.|+|+...++++|+.|..|++|++++..|+.+|.+    ...|.++.|++
T Consensus       113 ~~GvIrVid~~~~~~-~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~  191 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQC-SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL  191 (385)
T ss_pred             ceeEEEEEecchhhh-ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence            999999999998775 7888999999999999999999999999999999999999999999875    45699999999


Q ss_pred             CCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCc-------eE-----EeccCCCCeeEEEEeCCCCEEEEEEC
Q 004207          693 RLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENK-------TL-----TLSAHDKLVSSLAASTVNGMVASASH  760 (768)
Q Consensus       693 ~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~-------~~-----~l~~H~~~I~sla~spdg~~LaSgs~  760 (768)
                      ++.+|++++.|..|++|++........++...-|......       ..     +...|...|-|+.|-  |+++++-|-
T Consensus       192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksc  269 (385)
T KOG1034|consen  192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSC  269 (385)
T ss_pred             CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeeccc
Confidence            9999999999999999999865443333322222211111       00     334689999999998  789999999


Q ss_pred             CCcEEEeC
Q 004207          761 DKCVKIWK  768 (768)
Q Consensus       761 DG~V~IWD  768 (768)
                      ++.|..|+
T Consensus       270 enaI~~w~  277 (385)
T KOG1034|consen  270 ENAIVCWK  277 (385)
T ss_pred             CceEEEEe
Confidence            99999995

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.59  E-value=1.8e-13  Score=151.28  Aligned_cols=204  Identities=15%  Similarity=0.262  Sum_probs=155.4

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--------EEe-------------------------
Q 004207          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--------STL-------------------------  593 (768)
Q Consensus       547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~--------~tl-------------------------  593 (768)
                      .+.++++|.+.|+|++|+.||+.||+|+.|+.|.||+-+-...+        ..+                         
T Consensus        45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK  124 (1081)
T KOG1538|consen   45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQK  124 (1081)
T ss_pred             cccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhh
Confidence            46788999999999999999999999999999999975421111        000                         


Q ss_pred             --c--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-eeEEEeecCCCCeEEEEEeCCC----CeEEEEEeCCCc
Q 004207          594 --E--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK----EDLLCSCDNNSE  664 (768)
Q Consensus       594 --~--~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~-~~~~~~~~h~~~V~slafsp~g----~~lLaSgs~Dg~  664 (768)
                        .  .....|.+++|..||.+|+.|-.||+|.|-+-...+ ..+....+..++|.+++|+|..    ..++++.+...+
T Consensus       125 ~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT  204 (1081)
T KOG1538|consen  125 SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT  204 (1081)
T ss_pred             hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce
Confidence              0  022357888999999999999999999998654322 2233334567899999999863    357888888889


Q ss_pred             EEEEECCCCeeEE-EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCe
Q 004207          665 IRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLV  743 (768)
Q Consensus       665 I~iWDl~sg~~i~-~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I  743 (768)
                      +.+|.+. |+.+. .-...-...|+.+.++|.+++.|+.|+.+.+|.-+.- ..                -++...+..|
T Consensus       205 LSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv-rL----------------GTvg~~D~WI  266 (1081)
T KOG1538|consen  205 LSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV-RL----------------GTVGEQDSWI  266 (1081)
T ss_pred             eEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCe-EE----------------eeccccceeE
Confidence            9999886 55444 3333566788999999999999999999998865431 11                1223456789


Q ss_pred             eEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          744 SSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       744 ~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ++|+..|++.+++.|+.||+|..|+
T Consensus       267 WtV~~~PNsQ~v~~GCqDGTiACyN  291 (1081)
T KOG1538|consen  267 WTVQAKPNSQYVVVGCQDGTIACYN  291 (1081)
T ss_pred             EEEEEccCCceEEEEEccCeeehhh
Confidence            9999999999999999999998774

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=9.9e-14  Score=157.39  Aligned_cols=194  Identities=19%  Similarity=0.209  Sum_probs=137.2

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeE--EEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEE
Q 004207          549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVR  622 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~D---g~I~VWdl~t~~~--~~tl~~h~~~V~sl~fspdg~~LaTgs-~DgtIr  622 (768)
                      ..+..|...|.+.+|||||+.|+.++.+   ..|++||+.+++.  +..+.+|   ..+++|+|||+.|++++ .+|.+.
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~  273 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN  273 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence            3455778889999999999999887654   3699999988754  3333333   44789999999888764 688766


Q ss_pred             EE--ECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC-eeEEEEecCCCeeEEEEecCCCEEEE
Q 004207          623 VW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILA  699 (768)
Q Consensus       623 VW--Dl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg-~~i~~~~~~~~i~sl~fsp~~~~lla  699 (768)
                      ||  |+.++.  +..+..+...+.++.|+|+|+.++++++.++.+.||++... .....+.. .. ..+.|+|++.++++
T Consensus       274 Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~-~~-~~~~~SpDG~~ia~  349 (429)
T PRK01742        274 IYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG-RG-YSAQISADGKTLVM  349 (429)
T ss_pred             EEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC-CC-CCccCCCCCCEEEE
Confidence            55  555544  45566677778899999999988878777888888876532 22222322 22 45789999999888


Q ss_pred             EEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          700 AAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       700 gs~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ++.++ +.+||+.++....                 +..+ ....++.|+|++.+|++++.+|.+.+|+
T Consensus       350 ~~~~~-i~~~Dl~~g~~~~-----------------lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~  399 (429)
T PRK01742        350 INGDN-VVKQDLTSGSTEV-----------------LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQ  399 (429)
T ss_pred             EcCCC-EEEEECCCCCeEE-----------------ecCC-CCCCCceECCCCCEEEEEEcCCCceEEE
Confidence            77754 5558877654321                 1111 1134678999999999999999888763

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.58  E-value=2.5e-14  Score=155.16  Aligned_cols=207  Identities=16%  Similarity=0.194  Sum_probs=154.6

Q ss_pred             CEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (768)
Q Consensus       507 ~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t  586 (768)
                      ..++..+.||.+.+.....                    +..+.+.+|.+.|.|-.|+|||.-|++++.||.|++|.. +
T Consensus        76 d~~~i~s~DGkf~il~k~~--------------------rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-s  134 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSA--------------------RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-S  134 (737)
T ss_pred             ceEEEEcCCceEEEecccc--------------------hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-c
Confidence            3455667788877762211                    123456799999999999999999999999999999984 4


Q ss_pred             CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 004207          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (768)
Q Consensus       587 ~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~  666 (768)
                      |-+..++.-...+|+|++|.|+.+.++.| ..+.+.|=.+..... +..+.+|.+-|.+++|++..+ ++++|++|...+
T Consensus       135 GMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfK  211 (737)
T KOG1524|consen  135 GMLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFK  211 (737)
T ss_pred             chHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeecccccc-eeEEeccCcEEEEeecCcccc-ceeecCCceeEE
Confidence            55556666667889999999987665554 345566666654443 677889999999999999855 888999999999


Q ss_pred             EEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEE
Q 004207          667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSL  746 (768)
Q Consensus       667 iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sl  746 (768)
                      +||.-.......-.++.+|++++|.|+ ..++.++ -+++++                           .....+.|..+
T Consensus       212 vWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S-~nt~R~---------------------------~~p~~GSifnl  262 (737)
T KOG1524|consen  212 IWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWS-YNTARF---------------------------SSPRVGSIFNL  262 (737)
T ss_pred             eecccCcccccCChhccceeeeeeccc-cceeeee-eeeeee---------------------------cCCCccceEEE
Confidence            999874444344445778999999999 4344433 333331                           11345779999


Q ss_pred             EEeCCCCEEEEEECCCcEEE
Q 004207          747 AASTVNGMVASASHDKCVKI  766 (768)
Q Consensus       747 a~spdg~~LaSgs~DG~V~I  766 (768)
                      +|++||..+++|+..|.|.+
T Consensus       263 sWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  263 SWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             EEcCCCceeeccccCceEEE
Confidence            99999999999999998754

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.57  E-value=4.6e-14  Score=143.51  Aligned_cols=202  Identities=17%  Similarity=0.319  Sum_probs=151.8

Q ss_pred             EEecCCCCCeEEEEEcC-CCCEEEEEeCC-------CcEEEEECCC---------CeEEEEec-cCCCCEEEEEEcCCCC
Q 004207          549 QLIPASTSKVESCHFSP-DGKLLATGGHD-------KKAVLWCTES---------FTVKSTLE-EHTQWITDVRFSPSLS  610 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSp-dg~~LaSgs~D-------g~I~VWdl~t---------~~~~~tl~-~h~~~V~sl~fspdg~  610 (768)
                      +.|..|.+.|..|+-+| |.+.|+++..|       ..+.||.+..         .+++..+. .+-+.|.||.|.|++.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            45667889999999999 66677777552       2478998764         23344443 4556899999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEe-----ecCCCCeEEEEEeCC-CCeEEEEEeCCCcEEEEECCCCeeEEEEec--C
Q 004207          611 RLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVFKC--Q  682 (768)
Q Consensus       611 ~LaTgs~DgtIrVWDl~t~~~~~~~~-----~~h~~~V~slafsp~-g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--~  682 (768)
                      .|++-. |..|.+|++......+..+     ..|....++-+|+|. ..+.+++. .|+++..||+|+.++...+..  .
T Consensus       137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHg  214 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHG  214 (370)
T ss_pred             eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhc
Confidence            888875 8899999998765423222     235566888899983 23344444 489999999999888877763  4


Q ss_pred             CCeeEEEEecCCCE-EEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEEC
Q 004207          683 SGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASH  760 (768)
Q Consensus       683 ~~i~sl~fsp~~~~-llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~  760 (768)
                      ..|..+.|+|+..+ |++++.|+.|+|||.+..+.               .+.++.+|.-.|.+|.|+|.. .+|++||.
T Consensus       215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~---------------pv~el~~HsHWvW~VRfn~~hdqLiLs~~S  279 (370)
T KOG1007|consen  215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF---------------PVQELPGHSHWVWAVRFNPEHDQLILSGGS  279 (370)
T ss_pred             ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc---------------cccccCCCceEEEEEEecCccceEEEecCC
Confidence            45899999998776 56677899999999987433               244667999999999999975 58889999


Q ss_pred             CCcEEEe
Q 004207          761 DKCVKIW  767 (768)
Q Consensus       761 DG~V~IW  767 (768)
                      |..|.+|
T Consensus       280 Ds~V~Ls  286 (370)
T KOG1007|consen  280 DSAVNLS  286 (370)
T ss_pred             CceeEEE
Confidence            9999887

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=7e-14  Score=146.58  Aligned_cols=218  Identities=17%  Similarity=0.231  Sum_probs=159.1

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------CeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCc
Q 004207          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRT  620 (768)
Q Consensus       548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t------~~~~~tl~-~h~~~V~sl~fspdg~~LaTgs~Dgt  620 (768)
                      .+.+.+|.+.|.+|.|+.++++|++|+.|..++||+++.      .+++.... .|...|.|++|....++|++|..+++
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            355679999999999999999999999999999999864      34444332 35688999999999999999999999


Q ss_pred             EEEEECCCCCeeEEEee--cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe----eEEEEecCCCeeEEEEecCC
Q 004207          621 VRVWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVFKCQSGATQMRFQPRL  694 (768)
Q Consensus       621 IrVWDl~t~~~~~~~~~--~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~----~i~~~~~~~~i~sl~fsp~~  694 (768)
                      |.+.|+++... +..+.  ...+.|+.+..+|. .++|++.+.++.|.+||.+...    ++..-........+.|+|..
T Consensus       129 VI~HDiEt~qs-i~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  129 VIKHDIETKQS-IYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             eEeeeccccee-eeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence            99999998653 43333  23458999999999 4577788899999999998644    22222335668889999987


Q ss_pred             CEEE-EEEcCCeEEEEECCCceEeee-------cc-------------------------eeEEeecCCCceEEec-cCC
Q 004207          695 GRIL-AAAIENYISILDVETQVCRLK-------LQ-------------------------TLELWNMTENKTLTLS-AHD  740 (768)
Q Consensus       695 ~~ll-ags~Dg~I~IwD~~t~~~~~~-------~~-------------------------~I~iwd~~~~~~~~l~-~H~  740 (768)
                      ..|+ +.+..+.+-+||.+.......       +.                         .-.+||+....+..+. .|.
T Consensus       207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N  286 (609)
T KOG4227|consen  207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN  286 (609)
T ss_pred             ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence            7654 556678899999876422110       00                         2234455544443332 332


Q ss_pred             C-------CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          741 K-------LVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       741 ~-------~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .       .|.+++|..+ ..|++|+.+-.|++|+
T Consensus       287 ~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~Wk  320 (609)
T KOG4227|consen  287 PNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWK  320 (609)
T ss_pred             CCcceeeeeeeeeeeecc-eeeeccCcccceEEEe
Confidence            2       4667777654 3489999999999995

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.56  E-value=3.2e-14  Score=157.12  Aligned_cols=204  Identities=19%  Similarity=0.257  Sum_probs=151.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEe
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~  636 (768)
                      .|+.++|-|||.-|+.+.. ..+.|||...|..+.++++|.+.|+||+|+.||++|++|+.|+.|.||...-..  +.. 
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~Lk-   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--ILK-   89 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--eee-
Confidence            6999999999998877754 579999999999999999999999999999999999999999999999876433  122 


Q ss_pred             ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceE
Q 004207          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC  716 (768)
Q Consensus       637 ~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~  716 (768)
                      -.|...|.|+.|+|-.. .+++|+- ...-+|...... +...+....+.+++|..+|.+++.|-.+|+|.|-+......
T Consensus        90 YSH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek  166 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK  166 (1081)
T ss_pred             eccCCeeeEeecCchHH-Hhhhcch-hhccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence            24889999999999854 6667774 356788776433 33333456788999999999999999999999876544322


Q ss_pred             eeecc--------------------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 004207          717 RLKLQ--------------------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCV  764 (768)
Q Consensus       717 ~~~~~--------------------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V  764 (768)
                      +...+                                ++.++.+....+-.-..-.-...|+.+.++|.|+..||.|+.+
T Consensus       167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L  246 (1081)
T KOG1538|consen  167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQL  246 (1081)
T ss_pred             eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCce
Confidence            21111                                2222222111111111222346789999999999999999999


Q ss_pred             EEe
Q 004207          765 KIW  767 (768)
Q Consensus       765 ~IW  767 (768)
                      ++|
T Consensus       247 ~~f  249 (1081)
T KOG1538|consen  247 SLF  249 (1081)
T ss_pred             EEE
Confidence            887

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=1.9e-13  Score=157.91  Aligned_cols=247  Identities=15%  Similarity=0.166  Sum_probs=172.7

Q ss_pred             CCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (768)
Q Consensus       504 ~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWd  583 (768)
                      ....++.+|+.||.||+|..-....++.+++..|..-.+.     .  .+..+.=.-+.|.-...+|+++|.-..|+|||
T Consensus      1121 ~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~-----~--~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWD 1193 (1387)
T KOG1517|consen 1121 QDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQ-----L--PGARGTGLVVDWQQQSGHLLVTGDVRSIRIWD 1193 (1387)
T ss_pred             cchhheeeeccCceEEEecccccccCCceeEEeecccccc-----C--ccCCCCCeeeehhhhCCeEEecCCeeEEEEEe
Confidence            3456788999999999995433332334444444332221     1  11111113467877666777777788999999


Q ss_pred             CCCCeEEEEecc-CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCC--eeEEEeecCCCC--eEEEEEeCCCCeEEE
Q 004207          584 TESFTVKSTLEE-HTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTT--VMSLDFHPSKEDLLC  657 (768)
Q Consensus       584 l~t~~~~~tl~~-h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~~--~~~~~~~~h~~~--V~slafsp~g~~lLa  657 (768)
                      .....++..+.. ....|+++.-+- .|+.|+.|..||.||+||.+...  ..+..+..|...  |..+.+.+.|-.-|+
T Consensus      1194 a~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elv 1273 (1387)
T KOG1517|consen 1194 AHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELV 1273 (1387)
T ss_pred             cccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCccee
Confidence            998777776643 344566665433 47999999999999999987543  356778888887  999999998776678


Q ss_pred             EEeCCCcEEEEECCCCeeEEEEe------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCC
Q 004207          658 SCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTEN  731 (768)
Q Consensus       658 Sgs~Dg~I~iWDl~sg~~i~~~~------~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~  731 (768)
                      +|+.||.|++||+|.......+.      .++..+++..+++...+++|+. +.|.||++.......    ++ ++    
T Consensus      1274 Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~----~k-~n---- 1343 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNI----IK-YN---- 1343 (1387)
T ss_pred             eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcc----cc-cC----
Confidence            99999999999999743222211      1334899999999887777777 999999997654321    11 11    


Q ss_pred             ceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          732 KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       732 ~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                       ...+.-..+.+.|++|+|..-+||+|+.|.+|.||.
T Consensus      1344 -~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1344 -PGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             -cccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence             111222345679999999999999999999999983

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=7.4e-14  Score=145.09  Aligned_cols=187  Identities=17%  Similarity=0.303  Sum_probs=148.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCe-eEEEeecCC-CCe
Q 004207          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDY-SLRTFTGHS-TTV  643 (768)
Q Consensus       568 ~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fsp--dg~~LaTgs~DgtIrVWDl~t~~~-~~~~~~~h~-~~V  643 (768)
                      ..+|++...|.|++||..++..+..++++...++.++|..  ....+.+|+.||+||+||++.... ....+..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            4688888899999999999999999999999999999976  467899999999999999987543 345556665 466


Q ss_pred             EEEEEeCCCCeEEEEEe----CCCcEEEEECCCCee-EEEEe--cCCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCce
Q 004207          644 MSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSC-AGVFK--CQSGATQMRFQPRLG-RILAAAIENYISILDVETQV  715 (768)
Q Consensus       644 ~slafsp~g~~lLaSgs----~Dg~I~iWDl~sg~~-i~~~~--~~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~  715 (768)
                      .|++.... ..++++|.    .+-.|.+||+|.... ++.+.  ++..|++++|+|... .|++|+.||.|.+||+....
T Consensus       121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            77776655 44777764    366799999998765 55543  578899999999764 58889999999999997631


Q ss_pred             EeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 004207          716 CRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK  768 (768)
Q Consensus       716 ~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IWD  768 (768)
                                   ++..++....|...|.++.|..++ +.|.+-+..++..+|+
T Consensus       200 -------------EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~e  240 (376)
T KOG1188|consen  200 -------------EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYE  240 (376)
T ss_pred             -------------chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEE
Confidence                         222333445678889999999877 4688999999999996

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.54  E-value=1.1e-13  Score=146.38  Aligned_cols=203  Identities=20%  Similarity=0.318  Sum_probs=156.5

Q ss_pred             CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---------eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207          555 TSKVESCHFSPDGK-LLATGGHDKKAVLWCTESF---------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (768)
Q Consensus       555 ~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~---------~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVW  624 (768)
                      ..+|.++.|..+.. .|+||+.|..|+||-+...         +.+..+..|...|++|+|+|+|.+|++|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            45799999999766 9999999999999976532         2345677899999999999999999999999999999


Q ss_pred             ECC--------C-----C--CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEE
Q 004207          625 DTE--------N-----P--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQM  688 (768)
Q Consensus       625 Dl~--------t-----~--~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl  688 (768)
                      ...        +     .  ......+.+|...|+.++|+|++. ++++++.|..+++||+..|.....+.. ...+..+
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv  171 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV  171 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccceeEeecccccccccee
Confidence            765        2     1  123456778999999999999976 666899999999999999999888765 5668899


Q ss_pred             EEecCCCEEEEEEcCCeEEEEECCCceEeeecce----eEEeecCCCceEEeccCCC----CeeEEEEeCCCCEEEEEE
Q 004207          689 RFQPRLGRILAAAIENYISILDVETQVCRLKLQT----LELWNMTENKTLTLSAHDK----LVSSLAASTVNGMVASAS  759 (768)
Q Consensus       689 ~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~----I~iwd~~~~~~~~l~~H~~----~I~sla~spdg~~LaSgs  759 (768)
                      +|.|.+.++++-+.|...+++.+.....+.....    .....-..++...+. |++    -...++|+|+|.+|++.+
T Consensus       172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf-hDeTlksFFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF-HDETLKSFFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee-ecCchhhhhhhcccCCCCcEEEccc
Confidence            9999999999999998888888776655444331    111122223333322 222    245688999999988764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.54  E-value=1.2e-12  Score=153.62  Aligned_cols=258  Identities=17%  Similarity=0.212  Sum_probs=175.0

Q ss_pred             CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK  578 (768)
Q Consensus       499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~  578 (768)
                      .....++..++++||.||+|++|+..+-.            +.+...+...++..-..++.++...+.+..+|+++.||.
T Consensus      1054 ~a~s~~~~s~FvsgS~DGtVKvW~~~k~~------------~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1054 LAVSSEHTSLFVSGSDDGTVKVWNLRKLE------------GEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred             eeecCCCCceEEEecCCceEEEeeehhhh------------cCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence            33345667999999999999999665431            112333444445545678999999999999999999999


Q ss_pred             EEEEECCCCe-------------------EEE----------------E------------------e--ccCCCCEEEE
Q 004207          579 AVLWCTESFT-------------------VKS----------------T------------------L--EEHTQWITDV  603 (768)
Q Consensus       579 I~VWdl~t~~-------------------~~~----------------t------------------l--~~h~~~V~sl  603 (768)
                      |.+.+++..+                   .+.                +                  +  ....+.|+++
T Consensus      1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred             EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence            9998775310                   000                0                  0  0123569999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCC---eEEEEEe-CCCcEEEEECCCCeeEEEE
Q 004207          604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE---DLLCSCD-NNSEIRYWSINNGSCAGVF  679 (768)
Q Consensus       604 ~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~---~lLaSgs-~Dg~I~iWDl~sg~~i~~~  679 (768)
                      +.+|.+.++++|...|.+.+||++-+.........+..+|..+..+|...   ..++++. ..+.|.+|++.+|.+..++
T Consensus      1202 ~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred             EecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence            99999999999999999999999976553444445667888888877543   3444444 5789999999999877766


Q ss_pred             ecCCC--------------------eeEEEEecCCCEEEEEEcCCeEEEEECCCceEee-ecc-----------------
Q 004207          680 KCQSG--------------------ATQMRFQPRLGRILAAAIENYISILDVETQVCRL-KLQ-----------------  721 (768)
Q Consensus       680 ~~~~~--------------------i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~-~~~-----------------  721 (768)
                      .....                    ...+.+...++.++++++|..|+.||........ ...                 
T Consensus      1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~ 1361 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLST 1361 (1431)
T ss_pred             EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccc
Confidence            54311                    1123334445789999999999999987654331 000                 


Q ss_pred             ---------------eeEE-------eecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 004207          722 ---------------TLEL-------WNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK  768 (768)
Q Consensus       722 ---------------~I~i-------wd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IWD  768 (768)
                                     ++..       -.+..+.......|...|+++++.... .+|++++.||.|+||+
T Consensus      1362 i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1362 IPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             cCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence                           0000       000011111233588899999876544 6999999999999996

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.53  E-value=6.5e-13  Score=137.11  Aligned_cols=213  Identities=15%  Similarity=0.192  Sum_probs=161.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-C
Q 004207          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-N  628 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t---~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~-t  628 (768)
                      --..+|+|.+|++|+..+|++.....|.||....   .+...++..|...|++|+|+|..+.|++|+.|..-+||... .
T Consensus         8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence            3456899999999999999999999999998765   35778999999999999999999999999999999999984 3


Q ss_pred             CC-eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-----cCCCeeEEEEecCCCEEEEEEc
Q 004207          629 PD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQSGATQMRFQPRLGRILAAAI  702 (768)
Q Consensus       629 ~~-~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-----~~~~i~sl~fsp~~~~llags~  702 (768)
                      ++ .+...+..+...+++|.|+|.++ .|++|+.-..|.||-.+...--.+-+     ....|.++.|+|++-.+++|+.
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~  166 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST  166 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence            33 22345566889999999999965 77799988899888776543221111     2467899999999888999999


Q ss_pred             CCeEEEEECCCceEeeecceeEEeecC--CCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          703 ENYISILDVETQVCRLKLQTLELWNMT--ENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       703 Dg~I~IwD~~t~~~~~~~~~I~iwd~~--~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      |+..+||...-... .....-..|+-+  -+.++ ++....+.|..+.|+|.|..|+-.+.|..|.+=
T Consensus       167 D~k~rVfSayIK~V-dekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~  233 (361)
T KOG1523|consen  167 DGKCRVFSAYIKGV-DEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV  233 (361)
T ss_pred             CcceeEEEEeeecc-ccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence            99999986422110 000011122211  12222 233556789999999999999999999998764

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.52  E-value=8.6e-13  Score=150.87  Aligned_cols=236  Identities=14%  Similarity=0.150  Sum_probs=169.5

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEE
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHDKKAVLW  582 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~--~LaSgs~Dg~I~VW  582 (768)
                      +..+++.|+.+|.|.+|+.....+..         ..+.    -.....|..+|+.+.|-.+-.  -|++++.||.|+.|
T Consensus       254 ~p~ll~gG~y~GqV~lWD~~~~~~~~---------~s~l----s~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  254 DPNLLAGGCYNGQVVLWDLRKGSDTP---------PSGL----SALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             CcceEEeeccCceEEEEEccCCCCCC---------Cccc----ccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            56789999999999999776554321         0011    122347899999999977444  49999999999999


Q ss_pred             ECCCCeEEE------Eec------cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEC---CCCC----eeEEEeecCCCC
Q 004207          583 CTESFTVKS------TLE------EHTQWITDVRFSP-SLSRLATSSADRTVRVWDT---ENPD----YSLRTFTGHSTT  642 (768)
Q Consensus       583 dl~t~~~~~------tl~------~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl---~t~~----~~~~~~~~h~~~  642 (768)
                      +++......      ...      .....+++++|.+ +...|+.|+.+|.|..-.-   +...    .....+..|.++
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            877533210      011      1224589999988 4668999999998877332   2222    113356678999


Q ss_pred             eEEEEEeCCCCeEEEEEeCCCcEEEEECC-CCeeEEEEec-CCCeeEEEEecCCCE-EEEEEcCCeEEEEECCCceEeee
Q 004207          643 VMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC-QSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLK  719 (768)
Q Consensus       643 V~slafsp~g~~lLaSgs~Dg~I~iWDl~-sg~~i~~~~~-~~~i~sl~fsp~~~~-llags~Dg~I~IwD~~t~~~~~~  719 (768)
                      |+++.++|-+..+|.+++ |.+|+||... ...++..+.. ...+++++|+|.... |+++..||.|.|||+......  
T Consensus       401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~--  477 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE--  477 (555)
T ss_pred             eEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC--
Confidence            999999999888888887 9999999987 5555555554 344999999998665 455556999999998764322  


Q ss_pred             cceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          720 LQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       720 ~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                  .+.+...+....+.+.|++.|.+|++|...|.|++|+
T Consensus       478 ------------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~  514 (555)
T KOG1587|consen  478 ------------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK  514 (555)
T ss_pred             ------------CcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence                        1222223456677888999999999999999999985

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=3.2e-12  Score=127.54  Aligned_cols=195  Identities=17%  Similarity=0.255  Sum_probs=144.3

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      ++.++.+|+ ||.|+-|...+.... ....+.|+.....     +.-...-..|+++...|..+.|+.++.|+.++.||+
T Consensus        71 ~d~~Lls~g-dG~V~gw~W~E~~es-~~~K~lwe~~~P~-----~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dl  143 (325)
T KOG0649|consen   71 HDDFLLSGG-DGLVYGWEWNEEEES-LATKRLWEVKIPM-----QVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDL  143 (325)
T ss_pred             ehhheeecc-CceEEEeeehhhhhh-ccchhhhhhcCcc-----ccCcccCCccceeEeccCCCcEEEecCCeEEEEEEe
Confidence            466777775 499999976654322 2223334332211     110112245899999998888888889999999999


Q ss_pred             CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee---------cC-CCCeEEEEEeCCCCe
Q 004207          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT---------GH-STTVMSLDFHPSKED  654 (768)
Q Consensus       585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~---------~h-~~~V~slafsp~g~~  654 (768)
                      ++++...++++|++.|.++.-......+++|+.||++||||+++.+. +..+.         .| ...|.+++.+.+   
T Consensus       144 E~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~-v~~ie~yk~~~~lRp~~g~wigala~~ed---  219 (325)
T KOG0649|consen  144 EDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH-VSMIEPYKNPNLLRPDWGKWIGALAVNED---  219 (325)
T ss_pred             cCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccce-eEEeccccChhhcCcccCceeEEEeccCc---
Confidence            99999999999999999999866666799999999999999999875 43332         12 234667776643   


Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207          655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       655 lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                      .+ +|+....+.+|.++..+++.+|.....+..+.|..+  .+++++..+.|.-|.+..
T Consensus       220 Wl-vCGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  220 WL-VCGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             eE-EecCCCceeEEeccCCCceEEEecccceeEeeeecc--eEEEeccccceeeeeecc
Confidence            44 344467899999999999999999999999999876  688888788888887654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=5.4e-13  Score=145.23  Aligned_cols=196  Identities=18%  Similarity=0.287  Sum_probs=148.8

Q ss_pred             cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEE-EEecCCCCCeEEEEEcC--CCCEEEEEeCCCcE
Q 004207          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEF-QLIPASTSKVESCHFSP--DGKLLATGGHDKKA  579 (768)
Q Consensus       503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~l~~H~~~I~sl~fSp--dg~~LaSgs~Dg~I  579 (768)
                      ...+.++++||.|-.+.+|+...                   .+.+ ..-.+|...|.|+.|-|  +.+.+++|..|..|
T Consensus        59 n~dG~lL~SGSDD~r~ivWd~~~-------------------~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   59 NADGELLASGSDDTRLIVWDPFE-------------------YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             cCCCCEEeecCCcceEEeecchh-------------------cceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence            44677999999999999994421                   1222 23358999999999999  45689999999999


Q ss_pred             EEEECCC----------CeEEEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCeeEEE---------eecC
Q 004207          580 VLWCTES----------FTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRT---------FTGH  639 (768)
Q Consensus       580 ~VWdl~t----------~~~~~tl~~h~~~V~sl~fspdg-~~LaTgs~DgtIrVWDl~t~~~~~~~---------~~~h  639 (768)
                      +|||+..          .+....+..|...|..|+-.|++ ..|.+++.||+|+-||++....+...         +...
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~  199 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ  199 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence            9999984          23345567899999999999987 78999999999999999875432211         1222


Q ss_pred             CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC--------Ce----------eEEEEec-----C--------CCeeEE
Q 004207          640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--------GS----------CAGVFKC-----Q--------SGATQM  688 (768)
Q Consensus       640 ~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s--------g~----------~i~~~~~-----~--------~~i~sl  688 (768)
                      --...|++.+|...++|++|+.|-.+++||.+.        +.          |+..+..     .        ..++-+
T Consensus       200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v  279 (758)
T KOG1310|consen  200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV  279 (758)
T ss_pred             hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence            245789999999999999999999999999541        11          2333321     0        114567


Q ss_pred             EEecCCCEEEEEEcCCeEEEEECCCceEe
Q 004207          689 RFQPRLGRILAAAIENYISILDVETQVCR  717 (768)
Q Consensus       689 ~fsp~~~~llags~Dg~I~IwD~~t~~~~  717 (768)
                      .|+|+|..|++.-....|++||+...+..
T Consensus       280 tfnpNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  280 TFNPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             EECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence            89999999999888889999999876543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.50  E-value=2.7e-14  Score=161.44  Aligned_cols=234  Identities=18%  Similarity=0.259  Sum_probs=168.2

Q ss_pred             ccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 004207          495 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG  574 (768)
Q Consensus       495 ~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs  574 (768)
                      -++.+..++-.+++|.+|+.|..|++|...+.                   .+....++|.+.|+.++.+....++++++
T Consensus       191 naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-------------------~~lAs~rGhs~ditdlavs~~n~~iaaaS  251 (1113)
T KOG0644|consen  191 NAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-------------------RCLASCRGHSGDITDLAVSSNNTMIAAAS  251 (1113)
T ss_pred             hheeeeeeccccceEeecCccceeeeeeccch-------------------hhhccCCCCccccchhccchhhhhhhhcc
Confidence            34556778889999999999999999953322                   23456689999999999999999999999


Q ss_pred             CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCC-e-----------eEEE------
Q 004207          575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPD-Y-----------SLRT------  635 (768)
Q Consensus       575 ~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~-t~~-~-----------~~~~------  635 (768)
                      .|..|+||.+.++.++..+.+|++.|++|+|+|-.    +.+.||++++||.+ ... .           .+..      
T Consensus       252 ~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~  327 (1113)
T KOG0644|consen  252 NDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENN  327 (1113)
T ss_pred             cCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccc
Confidence            99999999999999999999999999999999964    77899999999987 110 0           0000      


Q ss_pred             ----eec------CCCCeEEEEEeC----------CCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCC
Q 004207          636 ----FTG------HSTTVMSLDFHP----------SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL  694 (768)
Q Consensus       636 ----~~~------h~~~V~slafsp----------~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~  694 (768)
                          ..+      ..-.+.+++|..          +...+.+++-.+..+++|++-+|...+.+.. ...+..+.++|..
T Consensus       328 ~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn  407 (1113)
T KOG0644|consen  328 GDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN  407 (1113)
T ss_pred             ccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC
Confidence                000      001122222222          2222333444566688888888887777665 4557888999987


Q ss_pred             CEE-EEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          695 GRI-LAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       695 ~~l-lags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      ..+ +.++.||.+.|||+-.+..+      +.|+         .+| ..+...+|+++|..++....-|.+.|.
T Consensus       408 ~ri~msag~dgst~iwdi~eg~pi------k~y~---------~gh-~kl~d~kFSqdgts~~lsd~hgql~i~  465 (1113)
T KOG0644|consen  408 PRIAMSAGYDGSTIIWDIWEGIPI------KHYF---------IGH-GKLVDGKFSQDGTSIALSDDHGQLYIL  465 (1113)
T ss_pred             cHhhhhccCCCceEeeecccCCcc------eeee---------ccc-ceeeccccCCCCceEecCCCCCceEEe
Confidence            664 46789999999998776543      2222         233 445667888888888777777777664

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.50  E-value=3.3e-12  Score=134.18  Aligned_cols=208  Identities=16%  Similarity=0.189  Sum_probs=149.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc---CCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCC
Q 004207          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFSPSLSRLATSS--ADRTVRVWDTENPD  630 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~---h~~~V~sl~fspdg~~LaTgs--~DgtIrVWDl~t~~  630 (768)
                      .+|.+|.++  .+.|+++-.+ .|+|||+++.+.+.++..   +...+.++.+++.+.+|+.-+  ..|.|.|||+.+-.
T Consensus        88 t~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~  164 (391)
T KOG2110|consen   88 TSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ  164 (391)
T ss_pred             CceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce
Confidence            457778774  5567776655 499999999999988753   444566666676677887643  36899999998765


Q ss_pred             eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc-EEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEEEEcCCeE
Q 004207          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYI  706 (768)
Q Consensus       631 ~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~-I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~llags~Dg~I  706 (768)
                      . +..+..|++.+.|++|+++|. ++||+++.|+ ||||++.+|..+..|..   ...|.+++|+|++.+|.+.+..++|
T Consensus       165 ~-v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTV  242 (391)
T KOG2110|consen  165 P-VNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETV  242 (391)
T ss_pred             e-eeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeE
Confidence            4 788889999999999999987 8889998886 78999999999999985   3447899999999999999999999


Q ss_pred             EEEECCCceEeeecc----------------------eeEEeecCCCceEEeccCCC--CeeEEEEeCCCCEEEEEECCC
Q 004207          707 SILDVETQVCRLKLQ----------------------TLELWNMTENKTLTLSAHDK--LVSSLAASTVNGMVASASHDK  762 (768)
Q Consensus       707 ~IwD~~t~~~~~~~~----------------------~I~iwd~~~~~~~~l~~H~~--~I~sla~spdg~~LaSgs~DG  762 (768)
                      +||.++.........                      -..+||....-........+  .+..+.-.+...++..++.||
T Consensus       243 HiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG  322 (391)
T KOG2110|consen  243 HIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDG  322 (391)
T ss_pred             EEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCC
Confidence            999987643111000                      01123322211111111111  344444345678999999999


Q ss_pred             cEEEeC
Q 004207          763 CVKIWK  768 (768)
Q Consensus       763 ~V~IWD  768 (768)
                      .++.|.
T Consensus       323 ~~y~y~  328 (391)
T KOG2110|consen  323 HLYSYR  328 (391)
T ss_pred             eEEEEE
Confidence            998873

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=1.2e-13  Score=151.28  Aligned_cols=213  Identities=15%  Similarity=0.213  Sum_probs=150.9

Q ss_pred             eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--------CeEEEEeccCCCCEEEEEEcCCCCEEEEEeC
Q 004207          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--------FTVKSTLEEHTQWITDVRFSPSLSRLATSSA  617 (768)
Q Consensus       546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t--------~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~  617 (768)
                      ..-.++..|.+.|..+.|++....|++|+.||+|++|++..        .+.+.++.+|.++|.|+++.+++.++++|+.
T Consensus       285 ~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~  364 (577)
T KOG0642|consen  285 NIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI  364 (577)
T ss_pred             ceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence            33347889999999999999999999999999999999832        3577899999999999999999999999999


Q ss_pred             CCcEEEEECCC---------CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe---cCCCe
Q 004207          618 DRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGA  685 (768)
Q Consensus       618 DgtIrVWDl~t---------~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~---~~~~i  685 (768)
                      ||+|+.|++..         .......+.||.+.|+.+++++.... |++|+.||+|+.|+...... .+|.   .++..
T Consensus       365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P  442 (577)
T KOG0642|consen  365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP  442 (577)
T ss_pred             CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence            99999996531         12334678899999999999998664 55999999999999876555 3332   23445


Q ss_pred             eEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 004207          686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVK  765 (768)
Q Consensus       686 ~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~  765 (768)
                      .++.+......+..  .+..+..+++.+.+....   +.++....   .....-...|.-+.++|...+.+++..|+.|+
T Consensus       443 lsvd~~ss~~a~~~--~s~~~~~~~~~~~ev~s~---~~~~~s~~---~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir  514 (577)
T KOG0642|consen  443 LSVDRTSSRPAHSL--ASFRFGYTSIDDMEVVSD---LLIFESSA---SPGPRRYPQINKVVSHPTADITFTAHEDRSIR  514 (577)
T ss_pred             ceEeeccchhHhhh--hhcccccccchhhhhhhh---eeeccccC---CCcccccCccceEEecCCCCeeEecccCCcee
Confidence            55665443211222  222233333332222211   11211110   01111224577888999999999999999999


Q ss_pred             EeC
Q 004207          766 IWK  768 (768)
Q Consensus       766 IWD  768 (768)
                      ++|
T Consensus       515 ~~d  517 (577)
T KOG0642|consen  515 FFD  517 (577)
T ss_pred             ccc
Confidence            986

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.50  E-value=5.3e-13  Score=136.01  Aligned_cols=189  Identities=14%  Similarity=0.225  Sum_probs=147.8

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWC  583 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWd  583 (768)
                      ..++|.+.|.|.+..+|....+                ........+-+|..+|+.|+|..++. .||+++.||.|++||
T Consensus       162 dp~~igtSSiDTTCTiWdie~~----------------~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFD  225 (364)
T KOG0290|consen  162 DPNLIGTSSIDTTCTIWDIETG----------------VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFD  225 (364)
T ss_pred             CcceeEeecccCeEEEEEEeec----------------cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEE
Confidence            4578899999999999965443                11222345679999999999998554 799999999999999


Q ss_pred             CCCCeEEEEecc---CCCCEEEEEEcC-CCCEEEEEeCCC-cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207          584 TESFTVKSTLEE---HTQWITDVRFSP-SLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (768)
Q Consensus       584 l~t~~~~~tl~~---h~~~V~sl~fsp-dg~~LaTgs~Dg-tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS  658 (768)
                      ++..+....+..   ...+...++|++ |-+++||-..|. .|.|.|++.+..++..+.+|.+.|..|+|.|.....+|+
T Consensus       226 LR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hict  305 (364)
T KOG0290|consen  226 LRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICT  305 (364)
T ss_pred             ecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeee
Confidence            988665544422   245788899988 467888866654 799999999988899999999999999999999999999


Q ss_pred             EeCCCcEEEEECCCC------eeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 004207          659 CDNNSEIRYWSINNG------SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL  709 (768)
Q Consensus       659 gs~Dg~I~iWDl~sg------~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~Iw  709 (768)
                      |+.|..+.+||+...      .++..+...+.|..+.|++...-.++.+.++++.|.
T Consensus       306 aGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL  362 (364)
T KOG0290|consen  306 AGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEIL  362 (364)
T ss_pred             cCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeEE
Confidence            999999999999752      233344457889999999766556666666665544

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.48  E-value=1.7e-12  Score=134.08  Aligned_cols=192  Identities=19%  Similarity=0.242  Sum_probs=151.5

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT-  584 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl-  584 (768)
                      ..-+|++.....|.+|....                ...++..+++..|...|++|+|+|..+.|++|+.|..-+||.. 
T Consensus        22 rt~iAv~~~~~evhiy~~~~----------------~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen   22 RTQIAVSPNNHEVHIYSMLG----------------ADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             CceEEeccCCceEEEEEecC----------------CCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            34677777777888883321                1225678889999999999999999999999999999999987 


Q ss_pred             CCC--eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe---eEEEeecCCCCeEEEEEeCCCCeEEEEE
Q 004207          585 ESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (768)
Q Consensus       585 ~t~--~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~---~~~~~~~h~~~V~slafsp~g~~lLaSg  659 (768)
                      +.+  ++...+..++..+++|.|+|.++.||+|+.-..|.||=++....   ...+-+.+.+.|++++|||++ .++++|
T Consensus        86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VLlaaG  164 (361)
T KOG1523|consen   86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VLLAAG  164 (361)
T ss_pred             CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-ceeccc
Confidence            333  45556677899999999999999999999999999998875331   223445567889999999994 588899


Q ss_pred             eCCCcEEEEEC-----CC-------------CeeEEEE-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004207          660 DNNSEIRYWSI-----NN-------------GSCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (768)
Q Consensus       660 s~Dg~I~iWDl-----~s-------------g~~i~~~-~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~  714 (768)
                      +.|+.++||..     +.             |..+..+ ...+-+..+.|+|.|..|+..+.|..|.+-|....
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence            99999999964     11             1223333 23566899999999999999999999999887665

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.47  E-value=2.2e-12  Score=151.57  Aligned_cols=223  Identities=18%  Similarity=0.237  Sum_probs=162.5

Q ss_pred             eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC-------CeEEEEeccCCCCEEEEEEcCCCCEEEEEeC
Q 004207          546 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSA  617 (768)
Q Consensus       546 ~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl~t-------~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~  617 (768)
                      ..+..+..|...|..++.+++. .+|+||+.||+|+||++..       .+...++......+.++.+.+.+..+|+++.
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence            4577788999999999998855 8999999999999999764       2333445445678999999999999999999


Q ss_pred             CCcEEEEECCCCCee------EEEeecC-CCCeEEE-EEeCC-CCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCe
Q 004207          618 DRTVRVWDTENPDYS------LRTFTGH-STTVMSL-DFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGA  685 (768)
Q Consensus       618 DgtIrVWDl~t~~~~------~~~~~~h-~~~V~sl-afsp~-g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i  685 (768)
                      ||.|++.+++.....      .+....+ .+.+.++ +|... +..+++.+...+.|..||+++......++.   ++.|
T Consensus      1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred             CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence            999999999862211      1122222 2333333 34333 234777888889999999998776666554   6889


Q ss_pred             eEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-------------------------------eeEEeecCCCceE
Q 004207          686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-------------------------------TLELWNMTENKTL  734 (768)
Q Consensus       686 ~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-------------------------------~I~iwd~~~~~~~  734 (768)
                      ++++.+|.+.+++.|++.|.+.+||++-...+....                               .+.+|++.++...
T Consensus      1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred             eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence            999999999999999999999999998765544332                               5778888877543


Q ss_pred             Ee-c-c------------------CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          735 TL-S-A------------------HDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       735 ~l-~-~------------------H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .. . .                  +.-....+++...+.++++|+.|..|+.||
T Consensus      1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred             EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence            21 1 1                  111222344444567999999999999998

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=4.3e-12  Score=146.94  Aligned_cols=238  Identities=15%  Similarity=0.193  Sum_probs=162.3

Q ss_pred             ccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC--CCCEEEEEeCCC
Q 004207          500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDK  577 (768)
Q Consensus       500 ~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp--dg~~LaSgs~Dg  577 (768)
                      ..+++-+..+++......|++|+..+.                ..+..+..-......|+.+.+-.  |..++++|+.||
T Consensus      1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~----------------~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dG 1133 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKG----------------RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDG 1133 (1387)
T ss_pred             eeecCCCceeEEcCCcceEEEEecccC----------------ceeccccCCCCCCCccceeeeecccchhheeeeccCc
Confidence            334555666666665667777755433                22222222223446788888866  556899999999


Q ss_pred             cEEEEEC-----CCCeEEEEecc-------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEE
Q 004207          578 KAVLWCT-----ESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  645 (768)
Q Consensus       578 ~I~VWdl-----~t~~~~~tl~~-------h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~s  645 (768)
                      .|+||+-     +..+.+..+.+       ..+.-.-+.|.....+|++++.-..|||||.+..........+....|++
T Consensus      1134 vIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1134 VIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTA 1213 (1387)
T ss_pred             eEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCcccee
Confidence            9999963     22344433322       11112345677766677777778899999999766544455556677888


Q ss_pred             EEEeCCCCeEEEEEeCCCcEEEEECCCCe---eEEEEec---CCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCceEee
Q 004207          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFKC---QSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRL  718 (768)
Q Consensus       646 lafsp~g~~lLaSgs~Dg~I~iWDl~sg~---~i~~~~~---~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~~~  718 (768)
                      +.-+-....++++|..||.|++||.|...   .+...+.   ..+|..+.+.+.|- .|++|+.||.|.+||++......
T Consensus      1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET 1293 (1387)
T ss_pred             ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc
Confidence            88766666799999999999999998643   3444433   23388899988654 49999999999999999852221


Q ss_pred             ecceeEEeecCCCceEEeccCC--C-CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          719 KLQTLELWNMTENKTLTLSAHD--K-LVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       719 ~~~~I~iwd~~~~~~~~l~~H~--~-~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .+              ++..|.  + ..+++..+++...+|||+. +.|+||+
T Consensus      1294 ~~--------------~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1294 FL--------------TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred             cc--------------eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence            11              122222  2 4899999999999999999 9999996

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=1.8e-11  Score=138.95  Aligned_cols=193  Identities=17%  Similarity=0.137  Sum_probs=130.0

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEEC
Q 004207          551 IPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDT  626 (768)
Q Consensus       551 l~~H~~~I~sl~fSpdg~~LaSgs~D---g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~La-Tgs~DgtIrVWDl  626 (768)
                      +..+...|.+.+|+|||+.|+..+.+   ..|.+||+.+++... +....+.+.+.+|+||++.|+ +.+.++...||.+
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            34667789999999999998877643   359999999887653 333345567899999998876 5677887677655


Q ss_pred             CCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEEC--CCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCC
Q 004207          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN  704 (768)
Q Consensus       627 ~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl--~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg  704 (768)
                      +........+..+...+.+..|+|+|+.+++++..++...+|.+  .++................|+|++.+|+.++.++
T Consensus       270 d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~  349 (427)
T PRK02889        270 NADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG  349 (427)
T ss_pred             ECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccC
Confidence            42222245555566667788999999988877766666666654  4454433322233345688999999988777654


Q ss_pred             ---eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 004207          705 ---YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK  762 (768)
Q Consensus       705 ---~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG  762 (768)
                         .|.+||+.++.                 ...+..+ .....+.|+|++++|+.++.++
T Consensus       350 g~~~I~v~d~~~g~-----------------~~~lt~~-~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        350 GAFKLYVQDLATGQ-----------------VTALTDT-TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             CcEEEEEEECCCCC-----------------eEEccCC-CCccCceECCCCCEEEEEEecC
Confidence               46666665543                 2222211 2345679999999888777544

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=7.4e-13  Score=141.23  Aligned_cols=193  Identities=18%  Similarity=0.190  Sum_probs=146.5

Q ss_pred             ccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 004207          500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA  579 (768)
Q Consensus       500 ~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I  579 (768)
                      .++...++.+++|..||.+|+|..+..                   ..+.....|.+.|.+++|+|||++|++.+.| ..
T Consensus       150 vaf~~~gs~latgg~dg~lRv~~~Ps~-------------------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~  209 (398)
T KOG0771|consen  150 VAFNGDGSKLATGGTDGTLRVWEWPSM-------------------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SA  209 (398)
T ss_pred             EEEcCCCCEeeeccccceEEEEecCcc-------------------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ce
Confidence            344566789999999999999965433                   1234456889999999999999999999999 89


Q ss_pred             EEEECCCCeEEEEec--cCCCCEEEEEEcCCC---C--EEEEEeCCCcEEEEECCCCCe----eEEEeecCCCCeEEEEE
Q 004207          580 VLWCTESFTVKSTLE--EHTQWITDVRFSPSL---S--RLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDF  648 (768)
Q Consensus       580 ~VWdl~t~~~~~tl~--~h~~~V~sl~fspdg---~--~LaTgs~DgtIrVWDl~t~~~----~~~~~~~h~~~V~slaf  648 (768)
                      +||++.++.++....  .....+..++|+.|+   .  +++....-+.|+.||+.....    ..+........|++++.
T Consensus       210 ~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V  289 (398)
T KOG0771|consen  210 RVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV  289 (398)
T ss_pred             EEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence            999999997766554  233457788898876   2  233334456777777653222    12222223457999999


Q ss_pred             eCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207          649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       649 sp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                      +++|+ +++.|+.||.|-|++..+-+++..++.  ...|+.+.|+|+.++++..+.|..+.+..+.-
T Consensus       290 S~dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  290 SDDGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             cCCCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            99987 777999999999999998888887764  45699999999999999999999888876644

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.44  E-value=2.6e-12  Score=146.94  Aligned_cols=199  Identities=18%  Similarity=0.246  Sum_probs=147.7

Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeE--EE----EeccCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEE
Q 004207          555 TSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KS----TLEEHTQWITDVRFSPSL--SRLATSSADRTVRVWD  625 (768)
Q Consensus       555 ~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~~~--~~----tl~~h~~~V~sl~fspdg--~~LaTgs~DgtIrVWD  625 (768)
                      ...|+|+.|+| +..+||.|+.+|.|.+||+..+..  ..    ....|..+|+.+.|..+.  .-|++++.||.|..|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            45699999999 667889999999999999987654  22    224688999999997653  4599999999999999


Q ss_pred             CCCCCeeEE-----Eee------cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEE---CCCCe-----eE-EEEecCCCe
Q 004207          626 TENPDYSLR-----TFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INNGS-----CA-GVFKCQSGA  685 (768)
Q Consensus       626 l~t~~~~~~-----~~~------~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWD---l~sg~-----~i-~~~~~~~~i  685 (768)
                      ++.-..+..     ...      .-...+++++|.+.....|++|+++|.|..-+   .+...     .. ....+.+.|
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v  401 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV  401 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence            875332111     111      12346899999999888999999999987733   22222     11 122246779


Q ss_pred             eEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECCCcE
Q 004207          686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCV  764 (768)
Q Consensus       686 ~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V  764 (768)
                      .++.++|-+..++..+.|.+|+||.....               ...++.+..+...|++++|||.. ..|+++..||.|
T Consensus       402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~---------------~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l  466 (555)
T KOG1587|consen  402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVI---------------ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNL  466 (555)
T ss_pred             EeeecCCCccceeeeeccceeEeccccCC---------------CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCce
Confidence            99999999888888777999999986521               11222344566779999999987 478888889999


Q ss_pred             EEeC
Q 004207          765 KIWK  768 (768)
Q Consensus       765 ~IWD  768 (768)
                      .|||
T Consensus       467 ~iWD  470 (555)
T KOG1587|consen  467 DIWD  470 (555)
T ss_pred             ehhh
Confidence            9998

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.44  E-value=3.9e-13  Score=135.46  Aligned_cols=204  Identities=19%  Similarity=0.255  Sum_probs=144.7

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      ++..+++|.+.|+|+.|-.+++ |.+|...|.|++|++.+.+.+..+. .|...|+.+.--|+ ..|.|-+.|+.+.+|+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~   83 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT   83 (323)
T ss_pred             CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence            3556779999999999987665 8899999999999999998888887 56778998888887 5688889999999999


Q ss_pred             CCCCCeeE-------------EEe---------------------------------------ecCCCCeEEEEEeC--C
Q 004207          626 TENPDYSL-------------RTF---------------------------------------TGHSTTVMSLDFHP--S  651 (768)
Q Consensus       626 l~t~~~~~-------------~~~---------------------------------------~~h~~~V~slafsp--~  651 (768)
                      +.-.....             ..+                                       .+..+.++|..|.-  .
T Consensus        84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~  163 (323)
T KOG0322|consen   84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG  163 (323)
T ss_pred             ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence            87422100             000                                       01123455555322  2


Q ss_pred             CCeEEEEEeCCCcEEEEECCCCeeEEEEe-----------cCCCeeE---------------------------------
Q 004207          652 KEDLLCSCDNNSEIRYWSINNGSCAGVFK-----------CQSGATQ---------------------------------  687 (768)
Q Consensus       652 g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-----------~~~~i~s---------------------------------  687 (768)
                      ...++++|.++|.|.+||+.++..+-.++           +..+|.+                                 
T Consensus       164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~  243 (323)
T KOG0322|consen  164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI  243 (323)
T ss_pred             ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence            34567788899999999998863222111           1223333                                 


Q ss_pred             -------------EEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCE
Q 004207          688 -------------MRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGM  754 (768)
Q Consensus       688 -------------l~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~  754 (768)
                                   +.+-||++.+++++.|+.|+||..++....                ..+.-|.+.|.+++|+|+..+
T Consensus       244 ~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL----------------AVLkyHsagvn~vAfspd~~l  307 (323)
T KOG0322|consen  244 RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL----------------AVLKYHSAGVNAVAFSPDCEL  307 (323)
T ss_pred             cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCch----------------hhhhhhhcceeEEEeCCCCch
Confidence                         444455555556666666666655554332                244579999999999999999


Q ss_pred             EEEEECCCcEEEeC
Q 004207          755 VASASHDKCVKIWK  768 (768)
Q Consensus       755 LaSgs~DG~V~IWD  768 (768)
                      +|.+|.|+.|.+|+
T Consensus       308 mAaaskD~rISLWk  321 (323)
T KOG0322|consen  308 MAAASKDARISLWK  321 (323)
T ss_pred             hhhccCCceEEeee
Confidence            99999999999996

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=1.8e-11  Score=140.62  Aligned_cols=213  Identities=18%  Similarity=0.282  Sum_probs=162.7

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (768)
Q Consensus       552 ~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t----~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~  627 (768)
                      ..|...++|.++||+++++|+|..||.|.||.--.    ......+.=|...|.+++|+++|.+|++|+..|.+.+|.++
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            46777799999999999999999999999996322    12234566688899999999999999999999999999999


Q ss_pred             CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec------------CCCeeEEEEecCCC
Q 004207          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLG  695 (768)
Q Consensus       628 t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~------------~~~i~sl~fsp~~~  695 (768)
                      +++  ...+..-.++|..+.++|+++ +++.+..|..|.+....+.....++.+            .+-.+.++++|..+
T Consensus       282 T~~--kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~  358 (792)
T KOG1963|consen  282 TGK--KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN  358 (792)
T ss_pred             CCC--cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence            977  455666678999999999987 444566699999988765544443332            12356789999888


Q ss_pred             EEEEEEcCCeEEEEECCCceEeeecc----------------------------------------------eeEEeecC
Q 004207          696 RILAAAIENYISILDVETQVCRLKLQ----------------------------------------------TLELWNMT  729 (768)
Q Consensus       696 ~llags~Dg~I~IwD~~t~~~~~~~~----------------------------------------------~I~iwd~~  729 (768)
                      .++..+..+.|-+||+.+...+..+.                                              .+++|-..
T Consensus       359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n  438 (792)
T KOG1963|consen  359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN  438 (792)
T ss_pred             ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence            88899999999999998765554433                                              56777654


Q ss_pred             CCceE------EeccCCCCeeEEEEeC-CCC-EEEEEECCCcEEEe
Q 004207          730 ENKTL------TLSAHDKLVSSLAAST-VNG-MVASASHDKCVKIW  767 (768)
Q Consensus       730 ~~~~~------~l~~H~~~I~sla~sp-dg~-~LaSgs~DG~V~IW  767 (768)
                      ....-      ....|...+...++.+ ... .++++|.||.++||
T Consensus       439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW  484 (792)
T KOG1963|consen  439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIW  484 (792)
T ss_pred             CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEE
Confidence            43211      2347887766666654 333 89999999999999

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=4e-11  Score=136.36  Aligned_cols=192  Identities=13%  Similarity=0.111  Sum_probs=135.8

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCCc--EE
Q 004207          549 QLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--VR  622 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~---Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~La-Tgs~Dgt--Ir  622 (768)
                      +.+..|...|.+.+|+|||+.|+..+.   +..|++||+.+++.. .+..+.+.+.+.+|+|||+.|+ +.+.++.  |+
T Consensus       195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  273 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY  273 (435)
T ss_pred             EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence            344577888999999999998887754   467999999887654 3445566788999999998765 5556665  77


Q ss_pred             EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEE
Q 004207          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA  700 (768)
Q Consensus       623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg--~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llag  700 (768)
                      +||++++.  ...+..+.....+..|+|+|+.++++...+|  .|++||+..+...........+....|+|++.+|+..
T Consensus       274 ~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~  351 (435)
T PRK05137        274 TMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFT  351 (435)
T ss_pred             EEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEE
Confidence            77888765  3455656666788999999998877665544  6888898876655544444556778999999998887


Q ss_pred             EcCC---eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207          701 AIEN---YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD  761 (768)
Q Consensus       701 s~Dg---~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D  761 (768)
                      ..++   .|.+||+.+..                 ...+. +...+..+.|+|||++|+..+.+
T Consensus       352 ~~~~~~~~i~~~d~~~~~-----------------~~~lt-~~~~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        352 KQGGGQFSIGVMKPDGSG-----------------ERILT-SGFLVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             EcCCCceEEEEEECCCCc-----------------eEecc-CCCCCCCCeECCCCCEEEEEEcc
Confidence            6532   45666654322                 11111 12236678999999988776543

>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]

Probab=99.42  E-value=8.7e-14  Score=140.37  Aligned_cols=76  Identities=33%  Similarity=0.768  Sum_probs=63.0

Q ss_pred             CcccHHhhHHHHHHHHHhcCChHHHHHHHHHhcCCCCCCcccCCCCCcchhhhHHHHHHhhhhccc----ccchhhhhhh
Q 004207            4 NNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNE----KHSESAASYI   79 (768)
Q Consensus         4 ~~~~~~~~L~~yiydyl~k~~~~~~A~~~~~e~~~~~~~~~~~~~~gfL~eww~~FWdlf~A~~~~----~~s~~a~qyi   79 (768)
                      ++-.|++.|..||||||++-|..++|++|+.|..+..+ +.+-.+.+||.+|||+|||+|+|...+    .|+..+..+-
T Consensus        12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~c~HSsEAKaFh   90 (354)
T KOG4594|consen   12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFH   90 (354)
T ss_pred             cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCcccccHhhhhhh
Confidence            56679999999999999999999999999999886555 667778899999999999999995444    4555555554


Q ss_pred             H
Q 004207           80 E   80 (768)
Q Consensus        80 q   80 (768)
                      .
T Consensus        91 d   91 (354)
T KOG4594|consen   91 D   91 (354)
T ss_pred             h
Confidence            4

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.42  E-value=1.5e-11  Score=134.15  Aligned_cols=168  Identities=17%  Similarity=0.251  Sum_probs=121.6

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEe----ccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCC---------
Q 004207          565 PDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD---------  630 (768)
Q Consensus       565 pdg~~LaSgs~Dg~I~VWdl~t~~~~~tl----~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~---------  630 (768)
                      +++--|++|-..|.|.+.|....+..+.+    .-....|+||.|-|. ...|+++-.+|.+++||.+-..         
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            34556788888889998886553222211    113467999999985 4567777889999999864110         


Q ss_pred             ------e------------eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEe
Q 004207          631 ------Y------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQ  691 (768)
Q Consensus       631 ------~------------~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fs  691 (768)
                            .            ++..+.-..+.|..++|+|||. .||+.+.||.+||||..+.+++..++. -+...|++|+
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS  341 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS  341 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence                  1            1112222345788999999987 666888899999999998877766654 5779999999


Q ss_pred             cCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEe
Q 004207          692 PRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAS  749 (768)
Q Consensus       692 p~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~s  749 (768)
                      ||+++|++|+.|.-|.||.+...+.+.+-.                +|++.|+.|+|.
T Consensus       342 PDGKyIvtGGEDDLVtVwSf~erRVVARGq----------------GHkSWVs~VaFD  383 (636)
T KOG2394|consen  342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQ----------------GHKSWVSVVAFD  383 (636)
T ss_pred             CCccEEEecCCcceEEEEEeccceEEEecc----------------ccccceeeEeec
Confidence            999999999999999999998876655433                566666666665

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=2.4e-11  Score=138.09  Aligned_cols=191  Identities=21%  Similarity=0.185  Sum_probs=132.1

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCC--cEEE
Q 004207          550 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVRV  623 (768)
Q Consensus       550 ~l~~H~~~I~sl~fSpdg~~LaSgs~D---g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~La-Tgs~Dg--tIrV  623 (768)
                      .+..|...|.+.+|+|||+.|+.++.+   ..|++||+.+++... +..+.+.+.+++|+|||+.|+ +.+.+|  .|++
T Consensus       198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~  276 (433)
T PRK04922        198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYV  276 (433)
T ss_pred             EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEE
Confidence            344667789999999999998887643   469999998876543 333444556889999998775 455665  5999


Q ss_pred             EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc--EEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE
Q 004207          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA  701 (768)
Q Consensus       624 WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~--I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags  701 (768)
                      ||+.++.  +..+..+......++|+|+|+.++++...++.  |+++|+.+++.............++|+|++.+|+..+
T Consensus       277 ~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~  354 (433)
T PRK04922        277 MDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVH  354 (433)
T ss_pred             EECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEE
Confidence            9998765  34455565566789999999988877766665  6667777766544333334455789999999988776


Q ss_pred             cCC---eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207          702 IEN---YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD  761 (768)
Q Consensus       702 ~Dg---~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D  761 (768)
                      .++   .|.+||+.++..                 ..+. +........|+|+|++|+..+.+
T Consensus       355 ~~~~~~~I~v~d~~~g~~-----------------~~Lt-~~~~~~~p~~spdG~~i~~~s~~  399 (433)
T PRK04922        355 GSGGQYRIAVMDLSTGSV-----------------RTLT-PGSLDESPSFAPNGSMVLYATRE  399 (433)
T ss_pred             CCCCceeEEEEECCCCCe-----------------EECC-CCCCCCCceECCCCCEEEEEEec
Confidence            543   466777655432                 2221 22234467899999987776653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=3.4e-11  Score=136.62  Aligned_cols=191  Identities=19%  Similarity=0.151  Sum_probs=130.0

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEE-eCCC--cEEEEE
Q 004207          552 PASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADR--TVRVWD  625 (768)
Q Consensus       552 ~~H~~~I~sl~fSpdg~~LaSgs~---Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTg-s~Dg--tIrVWD  625 (768)
                      ..+...+.+.+|||||+.|+..+.   +..|++|++.+++.... ....+.+.+++|+|||+.|+.. +.+|  .|++||
T Consensus       195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d  273 (429)
T PRK03629        195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD  273 (429)
T ss_pred             ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence            346678999999999998886542   35799999988764432 2233345578999999988765 4455  588999


Q ss_pred             CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc--EEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcC
Q 004207          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE  703 (768)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~--I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~D  703 (768)
                      ++++..  ..+..+...+....|+|+|+.++++...++.  |+++|+.++................|+|++.+++..+.+
T Consensus       274 ~~tg~~--~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~  351 (429)
T PRK03629        274 LASGQI--RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSN  351 (429)
T ss_pred             CCCCCE--EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEcc
Confidence            987653  3444455578899999999988777765555  444577766554333333445678999999998877654


Q ss_pred             C---eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 004207          704 N---YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC  763 (768)
Q Consensus       704 g---~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~  763 (768)
                      +   .|.+||+.++.                 ...+... .......|+|||.+|+.++.|+.
T Consensus       352 ~g~~~I~~~dl~~g~-----------------~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~  396 (429)
T PRK03629        352 GGQQHIAKQDLATGG-----------------VQVLTDT-FLDETPSIAPNGTMVIYSSSQGM  396 (429)
T ss_pred             CCCceEEEEECCCCC-----------------eEEeCCC-CCCCCceECCCCCEEEEEEcCCC
Confidence            3   35566665543                 2222211 12346789999999999988765

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=1.4e-11  Score=135.22  Aligned_cols=212  Identities=17%  Similarity=0.273  Sum_probs=158.6

Q ss_pred             CCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEE----------------------------eccCCC-----
Q 004207          553 ASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKST----------------------------LEEHTQ-----  598 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~-LaSgs~Dg~I~VWdl~t~~~~~t----------------------------l~~h~~-----  598 (768)
                      .|....+.|..+|||+| +|+|...-.|+|||+....+...                            +.-|..     
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            56677889999999997 56777788999999875432211                            011110     


Q ss_pred             ------CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC
Q 004207          599 ------WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (768)
Q Consensus       599 ------~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s  672 (768)
                            .-.+++++.-..-|++++....|+-++++.|.. +..+....+.+++|..++.. .||++|+.+|.|.+||.++
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf-L~P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~  206 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF-LNPFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRD  206 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEcccccc-ccccccccccceeeeecCcc-ceEEecccCceEEEecchh
Confidence                  012333332222355555666788889998876 67777677899999999884 4888999999999999998


Q ss_pred             CeeEEEEecCCC------------eeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-------------------
Q 004207          673 GSCAGVFKCQSG------------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-------------------  721 (768)
Q Consensus       673 g~~i~~~~~~~~------------i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-------------------  721 (768)
                      ...+..+.....            |+++.|+.+|-.+.+|+.+|.|.|||+++........                   
T Consensus       207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~  286 (703)
T KOG2321|consen  207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN  286 (703)
T ss_pred             hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc
Confidence            877777664332            8999999998889999999999999998864432211                   


Q ss_pred             --------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207          722 --------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  766 (768)
Q Consensus       722 --------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~I  766 (768)
                              .++|||..+++..........|+.+|+-|++.+|+++-.++.+..
T Consensus       287 ~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~  339 (703)
T KOG2321|consen  287 KVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHT  339 (703)
T ss_pred             eEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCccee
Confidence                    678999999998877777777999999999999999988876654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=3e-11  Score=138.82  Aligned_cols=258  Identities=16%  Similarity=0.248  Sum_probs=172.8

Q ss_pred             CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 004207          493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT  572 (768)
Q Consensus       493 ~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaS  572 (768)
                      +.+.+...++++.++++|+|..||.|.+|....-.            ++.   ...+.+.=|.++|.+++|+++|.+|++
T Consensus       204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~------------~~~---~t~t~lHWH~~~V~~L~fS~~G~~LlS  268 (792)
T KOG1963|consen  204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS------------DDS---ETCTLLHWHHDEVNSLSFSSDGAYLLS  268 (792)
T ss_pred             hcccceeEEeccccceEEEeccCCcEEEEeccccc------------ccc---ccceEEEecccccceeEEecCCceEee
Confidence            34444667889999999999999999999432210            011   124566789999999999999999999


Q ss_pred             EeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee--EEEe--------ecCCCC
Q 004207          573 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTF--------TGHSTT  642 (768)
Q Consensus       573 gs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~--~~~~--------~~h~~~  642 (768)
                      |+..|.+.+|.+.+++ ...+..-.++|..+.++||+.+.+....|..|.+....+....  +..+        ....+-
T Consensus       269 GG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l  347 (792)
T KOG1963|consen  269 GGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL  347 (792)
T ss_pred             cccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccc
Confidence            9999999999999988 4455566789999999999999999999999999987543321  1111        112445


Q ss_pred             eEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec------------CCCeeEEEEecCCCEEEEEEc--------
Q 004207          643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLGRILAAAI--------  702 (768)
Q Consensus       643 V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~------------~~~i~sl~fsp~~~~llags~--------  702 (768)
                      .+.++++|.-+ .++-++..|.|.+||+-+.+.+..+..            ..+++.++.+-.|.++++.-.        
T Consensus       348 ~t~~~idpr~~-~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~  426 (792)
T KOG1963|consen  348 TTGVSIDPRTN-SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFF  426 (792)
T ss_pred             ceeEEEcCCCC-ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhcc
Confidence            67788888533 455677789999999877665544431            112444555555555544321        


Q ss_pred             C--CeEEEEECCCceEeee--------------------------------cceeEEeecCCCc----------eEE-ec
Q 004207          703 E--NYISILDVETQVCRLK--------------------------------LQTLELWNMTENK----------TLT-LS  737 (768)
Q Consensus       703 D--g~I~IwD~~t~~~~~~--------------------------------~~~I~iwd~~~~~----------~~~-l~  737 (768)
                      |  ..+++|-.........                                ...+++|-+...+          +.. -.
T Consensus       427 ~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s  506 (792)
T KOG1963|consen  427 DGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS  506 (792)
T ss_pred             CceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeec
Confidence            1  2244554322111000                                0145666552211          111 11


Q ss_pred             cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          738 AHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       738 ~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      -|...+++++|+.||..| +.+.|++|.|||
T Consensus       507 y~k~~i~a~~fs~dGsll-a~s~~~~Itiwd  536 (792)
T KOG1963|consen  507 YHKTPITALCFSQDGSLL-AVSFDDTITIWD  536 (792)
T ss_pred             cccCcccchhhcCCCcEE-EEecCCEEEEec
Confidence            378899999999999655 567788999997

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=3.4e-11  Score=126.17  Aligned_cols=235  Identities=14%  Similarity=0.125  Sum_probs=150.2

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWC  583 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd-g~~LaSgs~Dg~I~VWd  583 (768)
                      |-..++++..|..|++|.......                   ...-......|+|++|-|. +..|++|+.. -|.||.
T Consensus       109 H~~~fava~nddvVriy~ksst~p-------------------t~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~  168 (445)
T KOG2139|consen  109 HIIAFAVATNDDVVRIYDKSSTCP-------------------TKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWS  168 (445)
T ss_pred             hhhhhhhhccCcEEEEeccCCCCC-------------------ceecchhhcceeEEEeccCCcceeeeeecc-eeEEEE
Confidence            334567888999999994432110                   0011123456999999994 4567777765 599997


Q ss_pred             CCCC----eE----------EEEeccCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCCeeEEEeecCCCCeEEEEE
Q 004207          584 TESF----TV----------KSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSLRTFTGHSTTVMSLDF  648 (768)
Q Consensus       584 l~t~----~~----------~~tl~~h~~~V~sl~fspdg~~LaTgs~D-gtIrVWDl~t~~~~~~~~~~h~~~V~slaf  648 (768)
                      .+.-    +.          +....+| .+|+++.|.+||..+++++.+ ..|.|||.+++.. +.......+.++-+.|
T Consensus       169 ~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~-~pL~~~glgg~slLkw  246 (445)
T KOG2139|consen  169 DSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK-IPLIPKGLGGFSLLKW  246 (445)
T ss_pred             cCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-ccccccCCCceeeEEE
Confidence            6421    11          1223455 579999999999999999875 5899999998775 3322234567889999


Q ss_pred             eCCCCeEEEEEeCCCcEEEEEC-CCCeeEEEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCceEeee----c-c
Q 004207          649 HPSKEDLLCSCDNNSEIRYWSI-NNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLK----L-Q  721 (768)
Q Consensus       649 sp~g~~lLaSgs~Dg~I~iWDl-~sg~~i~~~~~~~~i~sl~fsp~~~~llags~-Dg~I~IwD~~t~~~~~~----~-~  721 (768)
                      +||+..+| ++..|+..++|.. ++..+.+-.-..+.|...+|+|+|.+|+.++. +-.|+-...........    . .
T Consensus       247 SPdgd~lf-aAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~  325 (445)
T KOG2139|consen  247 SPDGDVLF-AATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKR  325 (445)
T ss_pred             cCCCCEEE-EecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCccccee
Confidence            99998776 5666999999954 44555555556678999999999998766554 34343332222111111    0 1


Q ss_pred             eeEEeecCCCceEEe-ccCCCCeeEEEEeCCCCEEEEEECCC
Q 004207          722 TLELWNMTENKTLTL-SAHDKLVSSLAASTVNGMVASASHDK  762 (768)
Q Consensus       722 ~I~iwd~~~~~~~~l-~~H~~~I~sla~spdg~~LaSgs~DG  762 (768)
                      .+-+-|+..-...+- .-..+.+.+++|.|.|.+||+.-..+
T Consensus       326 ~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  326 VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence            112223222111110 01246789999999999999876544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.39  E-value=3.6e-11  Score=121.68  Aligned_cols=150  Identities=19%  Similarity=0.302  Sum_probs=106.6

Q ss_pred             EEEEEcCCCCEEEEEeC---C-------CcEEEEECCC-CeEEEEecc-CCCCEEEEEEcCCCCEEEEE--eCCCcEEEE
Q 004207          559 ESCHFSPDGKLLATGGH---D-------KKAVLWCTES-FTVKSTLEE-HTQWITDVRFSPSLSRLATS--SADRTVRVW  624 (768)
Q Consensus       559 ~sl~fSpdg~~LaSgs~---D-------g~I~VWdl~t-~~~~~tl~~-h~~~V~sl~fspdg~~LaTg--s~DgtIrVW  624 (768)
                      ..+.|+++|++|++-..   |       +...||.++. ......+.. ..++|.+++|+|+++.||++  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            35789999987664332   1       2345555422 223333332 34579999999999987655  356799999


Q ss_pred             ECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe--CCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc
Q 004207          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI  702 (768)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs--~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~  702 (768)
                      |++ .+. +..+  +...+..|.|+|+|+.++++|.  ..|.|.+||+++.+++..+.+ ..++.++|+|+|.++++++.
T Consensus        89 d~~-~~~-i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~-~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GKK-IFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH-SDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-ccE-eEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc-CcEEEEEEcCCCCEEEEEEe
Confidence            997 232 4444  3467889999999997765542  357899999999888887765 45789999999999998875


Q ss_pred             ------CCeEEEEECCC
Q 004207          703 ------ENYISILDVET  713 (768)
Q Consensus       703 ------Dg~I~IwD~~t  713 (768)
                            |+.++||+...
T Consensus       164 ~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             ccceeccccEEEEEecC
Confidence                  67777777653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=4.4e-11  Score=135.83  Aligned_cols=173  Identities=17%  Similarity=0.115  Sum_probs=119.4

Q ss_pred             eEEEEEcCCCCEEEEEe-CCCcEEEE--ECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCeeE
Q 004207          558 VESCHFSPDGKLLATGG-HDKKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSL  633 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs-~Dg~I~VW--dl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVWDl~t~~~~~  633 (768)
                      ..+++|+|||+.|+.++ .+|.+.||  |+.+++. ..+..+...+.++.|+||++.|+.++ .++.+.||+++......
T Consensus       250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~  328 (429)
T PRK01742        250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA  328 (429)
T ss_pred             cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence            34689999999888764 67765555  6666554 45556777788999999999776555 57888888875433223


Q ss_pred             EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       634 ~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                      ..+ .+..  .++.|+|+|+.+++++. + .|.+||+.++........ .....+.|+|++..|++++.++.+.+|++. 
T Consensus       329 ~~l-~~~~--~~~~~SpDG~~ia~~~~-~-~i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~-  401 (429)
T PRK01742        329 SLV-GGRG--YSAQISADGKTLVMING-D-NVVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLV-  401 (429)
T ss_pred             EEe-cCCC--CCccCCCCCCEEEEEcC-C-CEEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEE-
Confidence            333 3433  46789999987665544 4 466699998876543322 234567899999999999988887776542 


Q ss_pred             ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC
Q 004207          714 QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV  751 (768)
Q Consensus       714 ~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd  751 (768)
                                   +........+..|.+.+..++|+|-
T Consensus       402 -------------~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        402 -------------SADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             -------------ECCCCceEEccCCCCCCCCcccCCC
Confidence                         2222333455578888899999974

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.38  E-value=1.1e-10  Score=122.87  Aligned_cols=191  Identities=16%  Similarity=0.174  Sum_probs=141.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 004207          557 KVESCHFSPDGKLLATGGHD--KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~D--g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~  634 (768)
                      .|.-+-|+  ..++|..+.+  +.+++++.+....+..+. ....|.+|+++.+  +|+++-.+. |+|||+++.+. +.
T Consensus        48 ~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~Mkl-Lh  120 (391)
T KOG2110|consen   48 SIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKL-LH  120 (391)
T ss_pred             EEEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc--eEEEEEccc-EEEEeccccee-eh
Confidence            35556665  4566655544  359999998888777765 3467999999864  676665555 99999998775 44


Q ss_pred             Eee---cCCCCeEEEEEeCCCCeEEEEEe-CCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCe-EEE
Q 004207          635 TFT---GHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY-ISI  708 (768)
Q Consensus       635 ~~~---~h~~~V~slafsp~g~~lLaSgs-~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~-I~I  708 (768)
                      ++.   .+...+.++.+++.+.++.+-++ ..|.|.+||+.+-+.+..+.. .+.+.+++|+++|..|++++..|+ |+|
T Consensus       121 TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRV  200 (391)
T KOG2110|consen  121 TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRV  200 (391)
T ss_pred             hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEE
Confidence            332   35555767777766555554443 468999999999888888775 567999999999999999999887 688


Q ss_pred             EECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          709 LDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       709 wD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |.+.++.....+        +.|..      ...|.+++|+|++.+|++.|..++|+||+
T Consensus       201 f~v~~G~kl~eF--------RRG~~------~~~IySL~Fs~ds~~L~~sS~TeTVHiFK  246 (391)
T KOG2110|consen  201 FSVPEGQKLYEF--------RRGTY------PVSIYSLSFSPDSQFLAASSNTETVHIFK  246 (391)
T ss_pred             EEcCCccEeeee--------eCCce------eeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence            888877654333        33322      23489999999999999999999999985

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.38  E-value=5.1e-13  Score=143.34  Aligned_cols=189  Identities=19%  Similarity=0.286  Sum_probs=161.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee
Q 004207          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~  637 (768)
                      -+.+.|+.+|++|+.|+..|.|-.+|..++++...+.. ...|.++.|-.+..+||++ ....++|||-...+  +..+.
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtE--lHClk  207 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTE--LHCLK  207 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCCCcE--Eeehh
Confidence            46688999999999999999999999999999888864 4569999999888887776 66789999976433  67777


Q ss_pred             cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceE
Q 004207          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVC  716 (768)
Q Consensus       638 ~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~  716 (768)
                      .| ..|..+.|.|. .++|++++..|.++.-|+.+|+.+..+.. .+.+..++-+|....+-.|...|+|.+|.....+.
T Consensus       208 ~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP  285 (545)
T KOG1272|consen  208 RH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP  285 (545)
T ss_pred             hc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence            65 46999999998 57888999999999999999999988876 55677888999988888888999999998876544


Q ss_pred             eeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          717 RLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       717 ~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .                +.+..|.++|.+|++.++|.|+||+|.|..|+|||
T Consensus       286 L----------------vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWD  321 (545)
T KOG1272|consen  286 L----------------VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWD  321 (545)
T ss_pred             H----------------HHHHhcCCCcceEEECCCCcEEeecccccceeEee
Confidence            3                24457999999999999999999999999999998

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=1.4e-12  Score=140.73  Aligned_cols=222  Identities=21%  Similarity=0.322  Sum_probs=172.0

Q ss_pred             eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCCEEEEEEcCC--CCEEEEEeCCCcEE
Q 004207          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS--LSRLATSSADRTVR  622 (768)
Q Consensus       546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl-~~h~~~V~sl~fspd--g~~LaTgs~DgtIr  622 (768)
                      .....+..|.+.|..|.|+..|..|++|+.|..|.+||...++.+..+ .+|...|....|-|.  ...+++++.||.|+
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            345667899999999999999999999999999999999988777665 578888888889884  56799999999999


Q ss_pred             EEECCCCCee--EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-------------------
Q 004207          623 VWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------------------  681 (768)
Q Consensus       623 VWDl~t~~~~--~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-------------------  681 (768)
                      +=.+....+.  ...+..|.++|..++..|+..+-|.+|+.|+.+.-+|++.+.....+.+                   
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence            9887654432  3456679999999999999999999999999999999885432111100                   


Q ss_pred             ------------------------C-------------------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceE--
Q 004207          682 ------------------------Q-------------------SGATQMRFQPRLGRILAAAIENYISILDVETQVC--  716 (768)
Q Consensus       682 ------------------------~-------------------~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~--  716 (768)
                                              .                   ..|++++|+.++..++++..|-.|++|....+.-  
T Consensus       293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~  372 (559)
T KOG1334|consen  293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE  372 (559)
T ss_pred             CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence                                    0                   0256778887777788888888888874332211  


Q ss_pred             ----------eee-cc----------------------------eeEEeecCCCceEEe-ccCCCCeeEEEEeCCCCEEE
Q 004207          717 ----------RLK-LQ----------------------------TLELWNMTENKTLTL-SAHDKLVSSLAASTVNGMVA  756 (768)
Q Consensus       717 ----------~~~-~~----------------------------~I~iwd~~~~~~~~l-~~H~~~I~sla~spdg~~La  756 (768)
                                ... ++                            .|.||+..+++++.+ .+-...|+||.-+|.-.+||
T Consensus       373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLA  452 (559)
T KOG1334|consen  373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLA  452 (559)
T ss_pred             CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhh
Confidence                      000 00                            788999888887743 34444899999999999999


Q ss_pred             EEECCCcEEEe
Q 004207          757 SASHDKCVKIW  767 (768)
Q Consensus       757 Sgs~DG~V~IW  767 (768)
                      ++|-|..||||
T Consensus       453 sSGid~DVKIW  463 (559)
T KOG1334|consen  453 SSGIDHDVKIW  463 (559)
T ss_pred             ccCCccceeee
Confidence            99999999999

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.36  E-value=4.5e-10  Score=124.60  Aligned_cols=239  Identities=17%  Similarity=0.148  Sum_probs=151.5

Q ss_pred             EEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004207          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF  587 (768)
Q Consensus       508 ~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~  587 (768)
                      ++++-..++.|.+.+..                   +.+.+..+......-..+.|+|||+++++++.||.|.++|+.+.
T Consensus         8 ~~V~~~~~~~v~viD~~-------------------t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~   68 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGA-------------------TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG   68 (369)
T ss_dssp             EEEEEGGGTEEEEEETT-------------------T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS
T ss_pred             EEEEecCCCEEEEEECC-------------------CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc
Confidence            44556667788777332                   22334455544443445789999999999999999999999999


Q ss_pred             eEEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCeeEEEeec-------CCCCeEEEEEeCCCCeEEEEE
Q 004207          588 TVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSC  659 (768)
Q Consensus       588 ~~~~tl~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVWDl~t~~~~~~~~~~-------h~~~V~slafsp~g~~lLaSg  659 (768)
                      +.+.++.... ...++++++||+++++++ .++.|.|+|.++.+. +..+..       ....+.+|..++....++++-
T Consensus        69 ~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l  146 (369)
T PF02239_consen   69 KVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL  146 (369)
T ss_dssp             SEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred             cEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence            9999997654 468899999999998776 588999999998775 443322       234678888888877666666


Q ss_pred             eCCCcEEEEECCCCeeE--EEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeecc---------------
Q 004207          660 DNNSEIRYWSINNGSCA--GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ---------------  721 (768)
Q Consensus       660 s~Dg~I~iWDl~sg~~i--~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~~---------------  721 (768)
                      -+.+.|.+.|......+  ..+..........|+|++++++++. .++.|.++|..+.+....+.               
T Consensus       147 kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~ph  226 (369)
T PF02239_consen  147 KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPH  226 (369)
T ss_dssp             TTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEE
T ss_pred             ccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccC
Confidence            66688988898765433  4555567788899999999987765 57789999998876554332               


Q ss_pred             -----------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEE----ECCCcEEEeC
Q 004207          722 -----------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA----SHDKCVKIWK  768 (768)
Q Consensus       722 -----------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSg----s~DG~V~IWD  768 (768)
                                             .+.+|+....+.+ ++...... ..+..+|++++|++.    ..++.|.|+|
T Consensus       227 p~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD  300 (369)
T PF02239_consen  227 PGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID  300 (369)
T ss_dssp             TTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred             CCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence                                   1112333333333 22222333 677889999999988    3457788775

...

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.34  E-value=3e-10  Score=128.02  Aligned_cols=191  Identities=18%  Similarity=0.163  Sum_probs=133.4

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEE-EeCCC--cEEEE
Q 004207          551 IPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADR--TVRVW  624 (768)
Q Consensus       551 l~~H~~~I~sl~fSpdg~~LaSgs~D---g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaT-gs~Dg--tIrVW  624 (768)
                      +..+...+.+.+|+|||++|+.+..+   ..|++||+.+++.... ..+...+.+++|+||++.|+. .+.++  .|++|
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~  263 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVM  263 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEEEE
Confidence            34566678999999999999877654   4799999998765433 335566778999999987764 44444  58889


Q ss_pred             ECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc
Q 004207          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI  702 (768)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg--~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~  702 (768)
                      |+.++.  ...+..+........|+|+++.++++...++  .|++||+.+++..........+..+.|+|++.+++.++.
T Consensus       264 d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~  341 (417)
T TIGR02800       264 DLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHR  341 (417)
T ss_pred             ECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEc
Confidence            988765  3444445555667899999988877665544  578888887765544444556778899999999988887


Q ss_pred             CC---eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 004207          703 EN---YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK  762 (768)
Q Consensus       703 Dg---~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG  762 (768)
                      ++   .|.+||+.++..                 ..+..+ ......+|+|++++|+.++.++
T Consensus       342 ~~~~~~i~~~d~~~~~~-----------------~~l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       342 EGGGFNIAVMDLDGGGE-----------------RVLTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             cCCceEEEEEeCCCCCe-----------------EEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence            65   677777765321                 111111 1234568999999888777654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.34  E-value=6.5e-11  Score=119.78  Aligned_cols=148  Identities=12%  Similarity=0.200  Sum_probs=105.8

Q ss_pred             EEEEEcCCCCEEEEEeC----------CCcEEEEECCCCCeeEEEeec-CCCCeEEEEEeCCCCeEEEE-EeCCCcEEEE
Q 004207          601 TDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTG-HSTTVMSLDFHPSKEDLLCS-CDNNSEIRYW  668 (768)
Q Consensus       601 ~sl~fspdg~~LaTgs~----------DgtIrVWDl~t~~~~~~~~~~-h~~~V~slafsp~g~~lLaS-gs~Dg~I~iW  668 (768)
                      ..+.|+++|++|++-..          -+...||.++.....+..+.- ..++|.+++|+|++..++++ |..+..|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46789999887766433          134556665443333333322 34579999999999876544 5567899999


Q ss_pred             ECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeE
Q 004207          669 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSS  745 (768)
Q Consensus       669 Dl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~D---g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~s  745 (768)
                      |++ ++.+..+. ...+..+.|+|+|+++++++.+   |.|.+||+++.+.+..                 ..|. .++.
T Consensus        89 d~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~-----------------~~~~-~~t~  148 (194)
T PF08662_consen   89 DVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST-----------------FEHS-DATD  148 (194)
T ss_pred             cCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeec-----------------cccC-cEEE
Confidence            997 66666664 4667889999999999998754   5688888876554332                 1233 4789


Q ss_pred             EEEeCCCCEEEEEEC------CCcEEEeC
Q 004207          746 LAASTVNGMVASASH------DKCVKIWK  768 (768)
Q Consensus       746 la~spdg~~LaSgs~------DG~V~IWD  768 (768)
                      ++|+|+|++|++++.      |..++||+
T Consensus       149 ~~WsPdGr~~~ta~t~~r~~~dng~~Iw~  177 (194)
T PF08662_consen  149 VEWSPDGRYLATATTSPRLRVDNGFKIWS  177 (194)
T ss_pred             EEEcCCCCEEEEEEeccceeccccEEEEE
Confidence            999999999999874      78889985

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.31  E-value=3.1e-11  Score=131.76  Aligned_cols=97  Identities=25%  Similarity=0.336  Sum_probs=87.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee
Q 004207          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~  632 (768)
                      --.+.|..++|+|||++||+.+.||.++|||..+.+++..++.--+...||+|+|||+||+||++|.-|.||.+...+. 
T Consensus       288 ~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRV-  366 (636)
T KOG2394|consen  288 IGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRV-  366 (636)
T ss_pred             eccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceE-
Confidence            3445899999999999999999999999999999888877777778899999999999999999999999999997664 


Q ss_pred             EEEeecCCCCeEEEEEeC
Q 004207          633 LRTFTGHSTTVMSLDFHP  650 (768)
Q Consensus       633 ~~~~~~h~~~V~slafsp  650 (768)
                      +..-.+|++.|..|+|+|
T Consensus       367 VARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  367 VARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEeccccccceeeEeecc
Confidence            777789999999999983

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.30  E-value=7.5e-12  Score=129.44  Aligned_cols=205  Identities=16%  Similarity=0.243  Sum_probs=149.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCeeEEEeec
Q 004207          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTG  638 (768)
Q Consensus       560 sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~La-Tgs~DgtIrVWDl~t~~~~~~~~~~  638 (768)
                      -++|||+|+++|+++.- ++.|-|.++.+....+.. -..|.-|.|..|..+++ ....|+.|.+|++...+. ...+..
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIde   89 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDE   89 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEecc
Confidence            37899999999999765 889999888766544432 34678889998866654 456688999999998886 444555


Q ss_pred             CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCe---EEE-------
Q 004207          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY---ISI-------  708 (768)
Q Consensus       639 h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~---I~I-------  708 (768)
                      ...++.+++|+|+|++++.+...+-.|.+|.+.+.++...-.....+..++|+|+|.+.+.++.-..   +.|       
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~  169 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI  169 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence            6678999999999999999999999999999998887766555677889999999988776664321   111       


Q ss_pred             ----EECCCceE-----eeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          709 ----LDVETQVC-----RLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       709 ----wD~~t~~~-----~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                          |++.|...     ......+.+||-.-...+......-.|..++|+|.+.+|++|+.|+.++|-
T Consensus       170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvl  237 (447)
T KOG4497|consen  170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVL  237 (447)
T ss_pred             HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhh
Confidence                22222211     111115667764433322222223568999999999999999999998873

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.30  E-value=9.7e-11  Score=122.17  Aligned_cols=252  Identities=15%  Similarity=0.243  Sum_probs=173.5

Q ss_pred             CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK  578 (768)
Q Consensus       499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~  578 (768)
                      ...+.+.+.-|.+.+.|.++|+|+-.+.               +..+..+.  .....+++++.++++...|++|-..|+
T Consensus        29 ~~~l~~~e~gv~~~s~drtvrv~lkrds---------------~q~wpsI~--~~mP~~~~~~~y~~e~~~L~vg~~ngt   91 (404)
T KOG1409|consen   29 AAILIPKEEGVISVSEDRTVRVWLKRDS---------------GQYWPSIY--HYMPSPCSAMEYVSESRRLYVGQDNGT   91 (404)
T ss_pred             hheeccCCCCeEEccccceeeeEEeccc---------------cccCchhh--hhCCCCceEeeeeccceEEEEEEecce
Confidence            3334556677788999999999965443               22222222  133467999999999999999999999


Q ss_pred             EEEEECC----CCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---------------------------
Q 004207          579 AVLWCTE----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---------------------------  627 (768)
Q Consensus       579 I~VWdl~----t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~---------------------------  627 (768)
                      +.-+.+.    .....+.+..|...|..+-|+-..+.+++.+.|+.+.---.+                           
T Consensus        92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvG  171 (404)
T KOG1409|consen   92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVG  171 (404)
T ss_pred             EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEec
Confidence            9888653    344556667788888888888777777777766543211011                           


Q ss_pred             -------------CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC--eeEEEEecCCCeeEEEEec
Q 004207          628 -------------NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKCQSGATQMRFQP  692 (768)
Q Consensus       628 -------------t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg--~~i~~~~~~~~i~sl~fsp  692 (768)
                                   +.-..+..+.+|.+.+++++|.+... ++.+|..|..|.+||+.-.  .......+...|..+...+
T Consensus       172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~  250 (404)
T KOG1409|consen  172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ  250 (404)
T ss_pred             ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence                         00113456788999999999999855 7779999999999999643  3333334566788888877


Q ss_pred             CCCEEEEEEcCCeEEEEECCCceEeeecc---------------------------------------------------
Q 004207          693 RLGRILAAAIENYISILDVETQVCRLKLQ---------------------------------------------------  721 (768)
Q Consensus       693 ~~~~llags~Dg~I~IwD~~t~~~~~~~~---------------------------------------------------  721 (768)
                      .-..+++++.|+.|.+||++.......-.                                                   
T Consensus       251 ~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~  330 (404)
T KOG1409|consen  251 HTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSY  330 (404)
T ss_pred             hheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccc
Confidence            77889999999999999997654322111                                                   


Q ss_pred             -------eeEEee--------cCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 -------TLELWN--------MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 -------~I~iwd--------~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                             .+++-|        .....+..+..-...|+.+.+..+-.+|+|+|.|..|+|||
T Consensus       331 p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd  392 (404)
T KOG1409|consen  331 PTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWD  392 (404)
T ss_pred             ccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEe
Confidence                   333322        11111112222234588999888889999999999999998

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.30  E-value=3.6e-10  Score=123.61  Aligned_cols=188  Identities=9%  Similarity=0.122  Sum_probs=127.8

Q ss_pred             EEEEeCCCcEEEEECCC-Ce--EEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCC-CCeeEEEeecCCCCeE
Q 004207          570 LATGGHDKKAVLWCTES-FT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN-PDYSLRTFTGHSTTVM  644 (768)
Q Consensus       570 LaSgs~Dg~I~VWdl~t-~~--~~~tl~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVWDl~t-~~~~~~~~~~h~~~V~  644 (768)
                      +++...|+.|.+|++.+ ++  .+.++. +.+.+..++++|++++|++++ .++.|.+|+++. +...........+...
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~   83 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT   83 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence            34446789999999964 33  445554 345677899999999987765 478999999973 3321111112334567


Q ss_pred             EEEEeCCCCeEEEEEeCCCcEEEEECCC-Ce---eEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeee
Q 004207          645 SLDFHPSKEDLLCSCDNNSEIRYWSINN-GS---CAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLK  719 (768)
Q Consensus       645 slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~---~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~  719 (768)
                      .++|+|+++.+++++..++.|.+||+.+ +.   .+..+........++++|+++++++++ .++.|.+||+.+......
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            8999999998887777789999999964 32   233333334567789999999987666 569999999976322110


Q ss_pred             cceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC-CCcEEEeC
Q 004207          720 LQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-DKCVKIWK  768 (768)
Q Consensus       720 ~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~-DG~V~IWD  768 (768)
                      .         ......... ...+..++|+|++++|+++.. ++.|.+||
T Consensus       164 ~---------~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~  203 (330)
T PRK11028        164 Q---------EPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQ  203 (330)
T ss_pred             c---------CCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEE
Confidence            0         000011111 234678999999999988876 89999986

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.27  E-value=1.8e-11  Score=133.30  Aligned_cols=171  Identities=15%  Similarity=0.183  Sum_probs=134.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEE
Q 004207          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (768)
Q Consensus       567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sl  646 (768)
                      ...|+.++.||++.|.+ +.+++...+..|.+.|.|-+|+|||.-|+|++.||.|++|.-...  ...++.....+|+|+
T Consensus        75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRStl~Q~~~~v~c~  151 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRSTVVQNEESIRCA  151 (737)
T ss_pred             cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHHHHhhcCceeEEE
Confidence            34788999999999987 457888889999999999999999999999999999999986431  123344456789999


Q ss_pred             EEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEE
Q 004207          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLEL  725 (768)
Q Consensus       647 afsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~i  725 (768)
                      +|.|+.+.++++.+  +.+.|=.+.....+-.++ +.+-|.++.|++..+.+++|+.|-..+|||.....          
T Consensus       152 ~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~----------  219 (737)
T KOG1524|consen  152 RWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN----------  219 (737)
T ss_pred             EECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc----------
Confidence            99999888886654  456665665444444444 45568899999999999999999999999875532          


Q ss_pred             eecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 004207          726 WNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH  760 (768)
Q Consensus       726 wd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~  760 (768)
                             ++....|+-+|++++|+|+ ..++.+|.
T Consensus       220 -------Lf~S~~~ey~ITSva~npd-~~~~v~S~  246 (737)
T KOG1524|consen  220 -------LFTSAAEEYAITSVAFNPE-KDYLLWSY  246 (737)
T ss_pred             -------cccCChhccceeeeeeccc-cceeeeee
Confidence                   2344579999999999999 66666665

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=9.8e-10  Score=124.75  Aligned_cols=191  Identities=17%  Similarity=0.164  Sum_probs=128.2

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCC--cEEE
Q 004207          550 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVRV  623 (768)
Q Consensus       550 ~l~~H~~~I~sl~fSpdg~~LaSgs~D---g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~La-Tgs~Dg--tIrV  623 (768)
                      .+..+...+.+..|+|||+.|+..+.+   ..|.+||+.+++... +....+.+.+.+|+|||+.|+ +.+.+|  .|++
T Consensus       193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~  271 (430)
T PRK00178        193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV  271 (430)
T ss_pred             EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence            344566789999999999998876544   368999998876543 323334556789999999876 444555  5888


Q ss_pred             EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE
Q 004207          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA  701 (768)
Q Consensus       624 WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg--~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags  701 (768)
                      ||++++..  ..+..+........|+|+++.++++...++  .|+++|+.+++...............|+|++.+++..+
T Consensus       272 ~d~~~~~~--~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~  349 (430)
T PRK00178        272 MDLASRQL--SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVH  349 (430)
T ss_pred             EECCCCCe--EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEE
Confidence            89987653  445555566777899999998887776554  57777888777544332233345678999999988776


Q ss_pred             cCC---eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207          702 IEN---YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD  761 (768)
Q Consensus       702 ~Dg---~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D  761 (768)
                      .++   .|.+||+.++..                 ..+.. ........|+|+|++|+..+.+
T Consensus       350 ~~~~~~~l~~~dl~tg~~-----------------~~lt~-~~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        350 RQDGNFHVAAQDLQRGSV-----------------RILTD-TSLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             ccCCceEEEEEECCCCCE-----------------EEccC-CCCCCCceECCCCCEEEEEEec
Confidence            533   356666655432                 11111 1122245899999888776643

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.26  E-value=1.5e-10  Score=118.61  Aligned_cols=200  Identities=21%  Similarity=0.265  Sum_probs=151.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCeeE
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSL  633 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~--tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~~~~~  633 (768)
                      ...++.|++.+.-++++-.+|.+.+-+.....+..  +++.|...++...|+. +.+++++|+.|+.+..||++-++..+
T Consensus       123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i  202 (339)
T KOG0280|consen  123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI  202 (339)
T ss_pred             eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence            35688999999999999999999966665555544  8899999999999976 45799999999999999999544333


Q ss_pred             -EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-CeeEEEEecCCCeeEEEEecCCC-EEEEEEcCCeEEEEE
Q 004207          634 -RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLG-RILAAAIENYISILD  710 (768)
Q Consensus       634 -~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~~~~~i~sl~fsp~~~-~llags~Dg~I~IwD  710 (768)
                       .....|...|.+|.-+|.....+++|+.|-.|++||.|+ ++++..-...++|..+.++|... .+++++..+..+|.+
T Consensus       203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~  282 (339)
T KOG0280|consen  203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD  282 (339)
T ss_pred             eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence             336678899999999998888999999999999999994 78887777789999999999643 355566666677777


Q ss_pred             CCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEE-Ee
Q 004207          711 VETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVK-IW  767 (768)
Q Consensus       711 ~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~-IW  767 (768)
                      .......  +. +        .......|.+.+..-.|.....+|+|++ .|+.++ +|
T Consensus       283 ~~~~~~e--~~-~--------~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W  330 (339)
T KOG0280|consen  283 SSDKVLE--FQ-I--------VLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW  330 (339)
T ss_pred             ecccccc--hh-e--------eeeccccccceeeccccccccceeeeeeccccceeeee
Confidence            6554321  10 0        0113346777777777865556888876 577755 66

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=1.7e-10  Score=121.07  Aligned_cols=184  Identities=16%  Similarity=0.239  Sum_probs=134.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc-CCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCe---
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY---  631 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~-h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~---  631 (768)
                      .+..++|++.-..||++..|-.|++||-.. ++...++. ....|+|++|.|. ++.|++|+..| |.||.......   
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r  177 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANR  177 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccc
Confidence            467789998666789999999999999766 55545542 3457999999996 55677777665 89998753221   


Q ss_pred             ----------eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEE-ecCCCeeEEEEecCCCEEEEE
Q 004207          632 ----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAA  700 (768)
Q Consensus       632 ----------~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~-~~~~~i~sl~fsp~~~~llag  700 (768)
                                .+....+| .+|+++.|.+||..++-+.-.|..|.|||..++.++... ...++++-+.|+|++.+++++
T Consensus       178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA  256 (445)
T KOG2139|consen  178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA  256 (445)
T ss_pred             ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence                      11233445 689999999998866655556889999999999887766 457788999999999999999


Q ss_pred             EcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE
Q 004207          701 AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS  759 (768)
Q Consensus       701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs  759 (768)
                      +-|+..++|.....-.      -+-|          .-..+.|...+|+|+|.+|+.++
T Consensus       257 t~davfrlw~e~q~wt------~erw----------~lgsgrvqtacWspcGsfLLf~~  299 (445)
T KOG2139|consen  257 TCDAVFRLWQENQSWT------KERW----------ILGSGRVQTACWSPCGSFLLFAC  299 (445)
T ss_pred             cccceeeeehhcccce------ecce----------eccCCceeeeeecCCCCEEEEEE
Confidence            9999999995433111      0111          12334788888999887554443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=1.8e-09  Score=122.70  Aligned_cols=175  Identities=17%  Similarity=0.092  Sum_probs=119.5

Q ss_pred             eEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC-Cc--EEEEECCCCCe
Q 004207          558 VESCHFSPDGKLLATG-GHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RT--VRVWDTENPDY  631 (768)
Q Consensus       558 I~sl~fSpdg~~LaSg-s~Dg--~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D-gt--IrVWDl~t~~~  631 (768)
                      +.++.|+|||+.|+.. +.+|  .|++||+++++..... .+...+....|+||++.|+.++.+ +.  |+++|+.++..
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~  323 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP  323 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence            4568999999988754 4444  5889999887765443 344567889999999988777654 44  44456665543


Q ss_pred             eEEEeecCCCCeEEEEEeCCCCeEEEEEeCC--CcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 004207          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL  709 (768)
Q Consensus       632 ~~~~~~~h~~~V~slafsp~g~~lLaSgs~D--g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~Iw  709 (768)
                        ..+..+...+.+..|+|+|+.+++++..+  ..|.+||+.++.... +..........|+|++..|++++.++...  
T Consensus       324 --~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~--  398 (429)
T PRK03629        324 --QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTFLDETPSIAPNGTMVIYSSSQGMGS--  398 (429)
T ss_pred             --EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCCCCCCceECCCCCEEEEEEcCCCce--
Confidence              33333445567889999999887766544  358889998876543 33323345678999999999988776421  


Q ss_pred             ECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeC
Q 004207          710 DVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAST  750 (768)
Q Consensus       710 D~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~sp  750 (768)
                                  .+.++++.......+..|.+.+...+|+|
T Consensus       399 ------------~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        399 ------------VLNLVSTDGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             ------------EEEEEECCCCCeEECccCCCCcCCcccCC
Confidence                        12334444444445667888889999987

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.26  E-value=5.1e-10  Score=118.67  Aligned_cols=201  Identities=17%  Similarity=0.278  Sum_probs=152.6

Q ss_pred             ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC--Cc
Q 004207          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHD--KK  578 (768)
Q Consensus       502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~-~LaSgs~D--g~  578 (768)
                      +.-.+..|.++-.+|.+.+|...... ..           ..   +...+..+ ..+..+.-++... .+++|+..  ..
T Consensus       111 l~~~dg~Litc~~sG~l~~~~~k~~d-~h-----------ss---~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~  174 (412)
T KOG3881|consen  111 LKLADGTLITCVSSGNLQVRHDKSGD-LH-----------SS---KLIKLATG-PGLYDVRQTDTDPYIVATGGKENINE  174 (412)
T ss_pred             hhhcCCEEEEEecCCcEEEEeccCCc-cc-----------cc---cceeeecC-CceeeeccCCCCCceEecCchhcccc
Confidence            34456677777888999999544331 10           00   11111122 3466666666444 56668888  78


Q ss_pred             EEEEECCCCeEEEEeccC---------CCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEE
Q 004207          579 AVLWCTESFTVKSTLEEH---------TQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD  647 (768)
Q Consensus       579 I~VWdl~t~~~~~tl~~h---------~~~V~sl~fspd--g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sla  647 (768)
                      +.|||++..+.++.-+.-         .-+++++.|-+.  ...|+|++.-+.||+||.+.+..++..+.-...+|+++.
T Consensus       175 lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~  254 (412)
T KOG3881|consen  175 LKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTG  254 (412)
T ss_pred             eeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeee
Confidence            999999988666543321         125788999887  789999999999999999999888888888889999999


Q ss_pred             EeCCCCeEEEEEeCCCcEEEEECCCCeeEEE-Eec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207          648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK  719 (768)
Q Consensus       648 fsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~-~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~  719 (768)
                      ..|.++ ++++|..-+.+..||++.++.... +.. .+.+.++..+|.+.++++++-|..|+|||+.+....+.
T Consensus       255 l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  255 LTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             ecCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence            999987 566899999999999999988776 443 67899999999999999999999999999999655543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.25  E-value=1.1e-10  Score=117.97  Aligned_cols=158  Identities=20%  Similarity=0.291  Sum_probs=124.8

Q ss_pred             CCCCCeEEEEEcC-CCC--EEEEEeCCCcEEEEECCCC----------eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004207          553 ASTSKVESCHFSP-DGK--LLATGGHDKKAVLWCTESF----------TVKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (768)
Q Consensus       553 ~H~~~I~sl~fSp-dg~--~LaSgs~Dg~I~VWdl~t~----------~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg  619 (768)
                      +..+.+.|..|.. ++.  +++.|-.+|.|.+||+.++          +.+.....|..+|.++.|.+.-..=++|+.+.
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d  227 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD  227 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence            3456788888644 344  4667888999999999987          34445567999999999988666667888888


Q ss_pred             cEEEEECCCC--CeeEEE-eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCC
Q 004207          620 TVRVWDTENP--DYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG  695 (768)
Q Consensus       620 tIrVWDl~t~--~~~~~~-~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~  695 (768)
                      .+..|.+...  ...+.. ..-..-.|..+.+-||++ +++|++.|+.||||..++...+.+++. .+.|.+++|+|+.+
T Consensus       228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~  306 (323)
T KOG0322|consen  228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE  306 (323)
T ss_pred             cceeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc
Confidence            9999998753  222211 111234588899999976 999999999999999999999988875 57799999999999


Q ss_pred             EEEEEEcCCeEEEEEC
Q 004207          696 RILAAAIENYISILDV  711 (768)
Q Consensus       696 ~llags~Dg~I~IwD~  711 (768)
                      .+++++.|..|.+|++
T Consensus       307 lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  307 LMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhccCCceEEeeec
Confidence            9999999999999986

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=7.2e-10  Score=126.16  Aligned_cols=172  Identities=13%  Similarity=0.174  Sum_probs=122.3

Q ss_pred             CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCC
Q 004207          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  653 (768)
Q Consensus       577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~---DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~  653 (768)
                      ..|.+||.+... ...+..|...+.+.+|+|||+.|+..+.   +..|++||+.++..  ..+..+.+.+.+.+|+|+|+
T Consensus       182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~  258 (435)
T PRK05137        182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR  258 (435)
T ss_pred             eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence            478889986544 4456667888999999999999888764   45899999988764  34455666788999999999


Q ss_pred             eEEEEEeCCCc--EEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc-CC--eEEEEECCCceEeeecceeEEeec
Q 004207          654 DLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQTLELWNM  728 (768)
Q Consensus       654 ~lLaSgs~Dg~--I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~-Dg--~I~IwD~~t~~~~~~~~~I~iwd~  728 (768)
                      .++++.+.++.  |++||+.++................|+|++.+++.++. ++  .|+++|+.++              
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~--------------  324 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS--------------  324 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC--------------
Confidence            88878776665  77789988776554444445667899999998887764 22  4555555443              


Q ss_pred             CCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC---cEEEeC
Q 004207          729 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDK---CVKIWK  768 (768)
Q Consensus       729 ~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG---~V~IWD  768 (768)
                         ....+..+...+....|+|+|++|+..+.++   .|.+||
T Consensus       325 ---~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d  364 (435)
T PRK05137        325 ---NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMK  364 (435)
T ss_pred             ---CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEE
Confidence               2222323344567788999999988776532   455553

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.24  E-value=8.3e-10  Score=117.09  Aligned_cols=203  Identities=13%  Similarity=0.155  Sum_probs=152.3

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEeccCCCCEEEEEEcCCC-CEEEEEeCC--C
Q 004207          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSL-SRLATSSAD--R  619 (768)
Q Consensus       547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~----~~~tl~~h~~~V~sl~fspdg-~~LaTgs~D--g  619 (768)
                      ++......+++|..++..  ...|++|-.+|.+.+|..+.+.    .+..+..+ ..+..+.-++.. .++++|+..  .
T Consensus        97 ~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n  173 (412)
T KOG3881|consen   97 DAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENIN  173 (412)
T ss_pred             cccccccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhccc
Confidence            344555667788887764  3467788889999999987432    33344444 457777777754 456668888  8


Q ss_pred             cEEEEECCCCCeeEEEeec---------CCCCeEEEEEeCC-CCeEEEEEeCCCcEEEEECCCC-eeEEEEec-CCCeeE
Q 004207          620 TVRVWDTENPDYSLRTFTG---------HSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNG-SCAGVFKC-QSGATQ  687 (768)
Q Consensus       620 tIrVWDl~t~~~~~~~~~~---------h~~~V~slafsp~-g~~lLaSgs~Dg~I~iWDl~sg-~~i~~~~~-~~~i~s  687 (768)
                      .+.|||++..+. +..-+.         -.-.++++.|.+. -.+.|++|+.-+.|++||.+.+ +++..|.. ..++++
T Consensus       174 ~lkiwdle~~~q-iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~  252 (412)
T KOG3881|consen  174 ELKIWDLEQSKQ-IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISS  252 (412)
T ss_pred             ceeeeeccccee-eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCccee
Confidence            899999987632 222111         1123567778764 2457889999999999999875 46666765 678999


Q ss_pred             EEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          688 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       688 l~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      +...|.++.++++...+.+..||++.+.....               .+.+-.+.|++|..+|.+.+|+++|-|..|+|+
T Consensus       253 ~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~---------------~~kg~tGsirsih~hp~~~~las~GLDRyvRIh  317 (412)
T KOG3881|consen  253 TGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC---------------GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIH  317 (412)
T ss_pred             eeecCCCcEEEEecccchhheecccCceeecc---------------ccCCccCCcceEEEcCCCceEEeeccceeEEEe
Confidence            99999999999999999999999998765432               234778899999999999999999999999999


Q ss_pred             C
Q 004207          768 K  768 (768)
Q Consensus       768 D  768 (768)
                      |
T Consensus       318 D  318 (412)
T KOG3881|consen  318 D  318 (412)
T ss_pred             e
Confidence            7

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.23  E-value=3.6e-11  Score=129.36  Aligned_cols=248  Identities=12%  Similarity=0.092  Sum_probs=177.8

Q ss_pred             CccccCCCCEEEeecCCCcEEEeecCCCCCC---------CCc-ccc----------ccccCCCceeeEEEEecCCCCCe
Q 004207          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADP---------RDR-VGR----------SAEVGKGFTFTEFQLIPASTSKV  558 (768)
Q Consensus       499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~---------~~~-~~~----------~~~~~~~~~~~~~~~l~~H~~~I  558 (768)
                      ...++..++.+..|+.-|.+-.|+.....--         +|. +.+          -|..--+..-.++++++.|.. |
T Consensus       134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~-v  212 (545)
T KOG1272|consen  134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIR-V  212 (545)
T ss_pred             eeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCc-h
Confidence            3445667888888888888888755443211         000 000          000000112246677777654 8


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeec
Q 004207          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (768)
Q Consensus       559 ~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~  638 (768)
                      ..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-...+-+|...|+|.+|.....+. +..+.+
T Consensus       213 ~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP-LvKiLc  291 (545)
T KOG1272|consen  213 ARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP-LVKILC  291 (545)
T ss_pred             hhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch-HHHHHh
Confidence            8899999998999999999999999999999999988888899999999889999999999999999988665 666677


Q ss_pred             CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEee
Q 004207          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL  718 (768)
Q Consensus       639 h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~  718 (768)
                      |.++|.+|+++++|. +++|.+.|..|+|||+++...+.++....+...++||..+  +++++....|.||.-......+
T Consensus       292 H~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~  368 (545)
T KOG1272|consen  292 HRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGH  368 (545)
T ss_pred             cCCCcceEEECCCCc-EEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeeeehhhhcCCCC
Confidence            999999999999987 5558888999999999998888877777778889998763  5667777778888432210000


Q ss_pred             ecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 004207          719 KLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK  762 (768)
Q Consensus       719 ~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG  762 (768)
                                 ...........+.|..|.|+|-.++|-+|...|
T Consensus       369 -----------~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  369 -----------GETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             -----------CCcchhhhccCcccccceeccHHHeeeccccCC
Confidence                       000000111234688888888777666665544

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.23  E-value=2.9e-09  Score=110.45  Aligned_cols=207  Identities=10%  Similarity=0.134  Sum_probs=141.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEeccC--CCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCC
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEH--TQWITDVRFSPSLSRLAT-SSADRTVRVWDTENPD  630 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~-t~~~~~tl~~h--~~~V~sl~fspdg~~LaT-gs~DgtIrVWDl~t~~  630 (768)
                      ..+|.+|.+.+  ..|++.- +.+|+||... ..+.++.+...  ...+.+++-+.+..+||. |-.-|.|.|-|+...+
T Consensus        94 ~~~I~~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~  170 (346)
T KOG2111|consen   94 NSEIKAVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTK  170 (346)
T ss_pred             ccceeeEEEcC--CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcC
Confidence            56799999965  4455553 5789999876 44555544322  223444433334444544 3446899999998655


Q ss_pred             e-eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc-EEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEEEEcCCe
Q 004207          631 Y-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENY  705 (768)
Q Consensus       631 ~-~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~-I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~llags~Dg~  705 (768)
                      . ....+.+|.+.|.|++.+-+|. ++||++..|+ |||||..+|+.+.++..   +..|.+++|+|+..+|++++..|+
T Consensus       171 ~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT  249 (346)
T KOG2111|consen  171 PNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT  249 (346)
T ss_pred             cCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe
Confidence            4 3578889999999999999976 8889998887 79999999999999875   566999999999999999999999


Q ss_pred             EEEEECCCceEeee-cceeEEee------cC-CCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 004207          706 ISILDVETQVCRLK-LQTLELWN------MT-ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVK  765 (768)
Q Consensus       706 I~IwD~~t~~~~~~-~~~I~iwd------~~-~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~  765 (768)
                      |+||.++....... ...+..+.      +. ......+.--.+...-++|-.+.+.|+..+.||+.+
T Consensus       250 lHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~  317 (346)
T KOG2111|consen  250 LHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYY  317 (346)
T ss_pred             EEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEE
Confidence            99999876432211 00111111      00 111223333355666778877766777777788654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.22  E-value=2.6e-09  Score=110.82  Aligned_cols=173  Identities=14%  Similarity=0.136  Sum_probs=125.3

Q ss_pred             CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecC--CCCeEEEEEeCCCCe
Q 004207          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH--STTVMSLDFHPSKED  654 (768)
Q Consensus       577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h--~~~V~slafsp~g~~  654 (768)
                      .+|.|||-...+++.++. ...+|.+|++.++  +|++. ....|+||...+.-..++.+...  ...+.+++-+.+...
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            379999977777777775 5678999999976  45554 46789999987433334444322  223444433333343


Q ss_pred             EEEEEeCCCcEEEEECCCCee---EEEEecCCCeeEEEEecCCCEEEEEEcCCe-EEEEECCCceEeeecceeEEeecCC
Q 004207          655 LLCSCDNNSEIRYWSINNGSC---AGVFKCQSGATQMRFQPRLGRILAAAIENY-ISILDVETQVCRLKLQTLELWNMTE  730 (768)
Q Consensus       655 lLaSgs~Dg~I~iWDl~sg~~---i~~~~~~~~i~sl~fsp~~~~llags~Dg~-I~IwD~~t~~~~~~~~~I~iwd~~~  730 (768)
                      +++-|-.-|.|.|-|+...+.   ...-.+...|.+++.+-+|..+++++..|+ |+|||..+++.+..++        .
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R--------R  222 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR--------R  222 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee--------c
Confidence            444566679999999986554   334446788999999999999999999987 7899988877654432        1


Q ss_pred             CceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          731 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       731 ~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      |      .....|.+++|+|+..+|+++|+.|+|+||
T Consensus       223 G------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF  253 (346)
T KOG2111|consen  223 G------VDRADIYCIAFSPNSSWLAVSSDKGTLHIF  253 (346)
T ss_pred             C------CchheEEEEEeCCCccEEEEEcCCCeEEEE
Confidence            1      234569999999999999999999999997

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.21  E-value=2.6e-08  Score=109.98  Aligned_cols=241  Identities=15%  Similarity=0.171  Sum_probs=154.4

Q ss_pred             CccccCCCCEEEeecC----CCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 004207          499 PNQLTDMDRFVDDGSL----DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG  574 (768)
Q Consensus       499 ~~~l~~~~~~latGS~----D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs  574 (768)
                      ...+++...+|.+...    ++.|..|....+               ...+..+............++++|++++|+++.
T Consensus        41 ~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~---------------~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van  105 (345)
T PF10282_consen   41 WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD---------------TGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN  105 (345)
T ss_dssp             CEEE-TTSSEEEEEETTSSTTTEEEEEEEETT---------------TTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEeCCCEEEEEEccccCCCCEEEEEECCC---------------cceeEEeeeeccCCCCcEEEEEecCCCEEEEEE
Confidence            3444556666666554    345655533221               123444555543444566799999999998887


Q ss_pred             C-CCcEEEEECCC-CeEEEE---ec----------cCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCeeE---EE
Q 004207          575 H-DKKAVLWCTES-FTVKST---LE----------EHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSL---RT  635 (768)
Q Consensus       575 ~-Dg~I~VWdl~t-~~~~~t---l~----------~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~t~~~~~---~~  635 (768)
                      . +|.|.++++.. +.+...   +.          .......++.|+|++++|++... ...|++|+++.....+   ..
T Consensus       106 y~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~  185 (345)
T PF10282_consen  106 YGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS  185 (345)
T ss_dssp             TTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE
T ss_pred             ccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec
Confidence            4 89999999986 443322   21          11245789999999998888654 3479999998655212   11


Q ss_pred             -eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC--CCee--EEEEec-------CCCeeEEEEecCCCEEEEEE-c
Q 004207          636 -FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NGSC--AGVFKC-------QSGATQMRFQPRLGRILAAA-I  702 (768)
Q Consensus       636 -~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~--sg~~--i~~~~~-------~~~i~sl~fsp~~~~llags-~  702 (768)
                       ..........++|+|+++.+++++..++.|.+|++.  .+..  +..+..       ......++++|++++|+++. .
T Consensus       186 ~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~  265 (345)
T PF10282_consen  186 IKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG  265 (345)
T ss_dssp             EECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT
T ss_pred             cccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc
Confidence             223446688999999999999999999999999988  4432  222222       12467899999999988876 5


Q ss_pred             CCeEEEEECCC--ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 004207          703 ENYISILDVET--QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK  768 (768)
Q Consensus       703 Dg~I~IwD~~t--~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~IWD  768 (768)
                      ++.|.+|++..  +... .   +.          .+.........++++|++++|+++. .++.|.+|+
T Consensus       266 ~~sI~vf~~d~~~g~l~-~---~~----------~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~  320 (345)
T PF10282_consen  266 SNSISVFDLDPATGTLT-L---VQ----------TVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD  320 (345)
T ss_dssp             TTEEEEEEECTTTTTEE-E---EE----------EEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEEEecCCCceE-E---EE----------EEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence            67899999843  2221 1   11          1112233478999999999999887 466788874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=2.1e-09  Score=122.62  Aligned_cols=190  Identities=19%  Similarity=0.197  Sum_probs=123.3

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEE-EeCCCc--EEEE
Q 004207          551 IPASTSKVESCHFSPDGKLLATGGHD-K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRVW  624 (768)
Q Consensus       551 l~~H~~~I~sl~fSpdg~~LaSgs~D-g--~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaT-gs~Dgt--IrVW  624 (768)
                      +..+...+.+..|+|||+.|+..+.+ +  .|++||+.+++... +....+.....+|+||++.|+. .+.++.  |++|
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~  291 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV  291 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence            33556678899999999988876543 3  58889998876532 2222334457899999997765 556664  7777


Q ss_pred             ECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc--EEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc
Q 004207          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI  702 (768)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~--I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~  702 (768)
                      |+++++  ...+..+...+...+|+|+++.++++...++.  |+++|+.+++..............+|+|++.+++..+.
T Consensus       292 dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~  369 (448)
T PRK04792        292 DIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNR  369 (448)
T ss_pred             ECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEe
Confidence            887765  34445555667789999999988877765554  66678877765443322233445789999999887765


Q ss_pred             C-C--eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207          703 E-N--YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD  761 (768)
Q Consensus       703 D-g--~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D  761 (768)
                      + +  .|.++|+.++..                 ..+... .......|+|+|++|+..+.+
T Consensus       370 ~~g~~~I~~~dl~~g~~-----------------~~lt~~-~~d~~ps~spdG~~I~~~~~~  413 (448)
T PRK04792        370 TNGKFNIARQDLETGAM-----------------QVLTST-RLDESPSVAPNGTMVIYSTTY  413 (448)
T ss_pred             cCCceEEEEEECCCCCe-----------------EEccCC-CCCCCceECCCCCEEEEEEec
Confidence            3 3  344455554322                 111111 112234799999877766543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.18  E-value=1.1e-09  Score=113.57  Aligned_cols=210  Identities=14%  Similarity=0.174  Sum_probs=150.9

Q ss_pred             CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCeeE
Q 004207          556 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSL  633 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSg-s~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~-~LaTgs~DgtIrVWDl~t~~~~~  633 (768)
                      +.|.-|.|..|..+++++ ..|+.|.+|++..-+-...+......+.+++|+|||+ +|.+...|-.|.||.+.+.+...
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            457778999888876654 6688999999998888888888888999999999995 56677789999999998866432


Q ss_pred             EEeecCCCCeEEEEEeCCCCeEEEEEeCC-----------------------------------CcEEEEECCCCeeEEE
Q 004207          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----------------------------------SEIRYWSINNGSCAGV  678 (768)
Q Consensus       634 ~~~~~h~~~V~slafsp~g~~lLaSgs~D-----------------------------------g~I~iWDl~sg~~i~~  678 (768)
                      ...  .+..+..++|+|+|....+....|                                   ..+.+||---.-.+..
T Consensus       129 ~~~--pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a  206 (447)
T KOG4497|consen  129 LPH--PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA  206 (447)
T ss_pred             ecc--cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence            222  244568899999987543322222                                   2344454333333344


Q ss_pred             EecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-------------------------------------
Q 004207          679 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-------------------------------------  721 (768)
Q Consensus       679 ~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-------------------------------------  721 (768)
                      +...-++..++|+|.+.++++|+.|+.++|.+--+-+....+.                                     
T Consensus       207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a  286 (447)
T KOG4497|consen  207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA  286 (447)
T ss_pred             eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence            4445678899999999999999999998886544332222111                                     


Q ss_pred             --------------------------------------------------------eeEEeecCCCceEEeccCCCCeeE
Q 004207          722 --------------------------------------------------------TLELWNMTENKTLTLSAHDKLVSS  745 (768)
Q Consensus       722 --------------------------------------------------------~I~iwd~~~~~~~~l~~H~~~I~s  745 (768)
                                                                              .+-+||+...++..+-....+|..
T Consensus       287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pira  366 (447)
T KOG4497|consen  287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRA  366 (447)
T ss_pred             CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeE
Confidence                                                                    566788877777666666778999


Q ss_pred             EEEeCCCCEEEEEECCCcEEEe
Q 004207          746 LAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       746 la~spdg~~LaSgs~DG~V~IW  767 (768)
                      ..|+|....|+.+.....+++|
T Consensus       367 f~WdP~~prL~vctg~srLY~W  388 (447)
T KOG4497|consen  367 FEWDPGRPRLVVCTGKSRLYFW  388 (447)
T ss_pred             EEeCCCCceEEEEcCCceEEEE
Confidence            9999988777777766677777

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=5.2e-09  Score=118.85  Aligned_cols=176  Identities=15%  Similarity=0.133  Sum_probs=113.0

Q ss_pred             CCCeEEEEEcCCCCEEE-EEeCCCcEEEE--ECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEEC--CC
Q 004207          555 TSKVESCHFSPDGKLLA-TGGHDKKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT--EN  628 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~La-Sgs~Dg~I~VW--dl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl--~t  628 (768)
                      .+.+.+..|+|||+.|+ +.+.++...||  |+.++. ...+..+...+....|+|||+.|+..+. ++...||.+  .+
T Consensus       239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~  317 (427)
T PRK02889        239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG  317 (427)
T ss_pred             CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence            34567899999999876 56777776666  454444 4455555556678899999998876654 466666655  44


Q ss_pred             CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCe-
Q 004207          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY-  705 (768)
Q Consensus       629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg--~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~-  705 (768)
                      +..  ..+..+.......+|+|+|+.+++++..++  .|.+||+.++...... .........|+|++..|+.++.++. 
T Consensus       318 g~~--~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~~~~~~p~~spdg~~l~~~~~~~g~  394 (427)
T PRK02889        318 GAA--QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-DTTRDESPSFAPNGRYILYATQQGGR  394 (427)
T ss_pred             Cce--EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CCCCccCceECCCCCEEEEEEecCCC
Confidence            432  222222334456889999997776655443  6999999887654433 2334567899999999888876542 


Q ss_pred             --EEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC
Q 004207          706 --ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV  751 (768)
Q Consensus       706 --I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd  751 (768)
                        +.+.++.                 ......+..+.+.+...+|+|-
T Consensus       395 ~~l~~~~~~-----------------g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        395 SVLAAVSSD-----------------GRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EEEEEEECC-----------------CCceEEeecCCCCCCCCccCCC
Confidence              3333332                 2222233345667777888763

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.17  E-value=5.9e-10  Score=116.32  Aligned_cols=254  Identities=14%  Similarity=0.227  Sum_probs=165.4

Q ss_pred             cccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCC------------CCCeEEEEE
Q 004207          496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS------------TSKVESCHF  563 (768)
Q Consensus       496 ~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H------------~~~I~sl~f  563 (768)
                      .++.+.++..+.+|++|..+|.|.+|.......+              .+.....+..|            ...|..+.|
T Consensus        27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~--------------ey~~~t~fqshepEFDYLkSleieEKinkIrw   92 (433)
T KOG1354|consen   27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKG--------------EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRW   92 (433)
T ss_pred             ceeeEEeecccceEeecCCCCeEEEeeccccccc--------------ceeeeeeeeccCcccchhhhhhhhhhhhhcee
Confidence            3445566777899999999999999943322211              12222223333            346889999


Q ss_pred             cCCCC--EEEEEeCCCcEEEEECCCCeEE-----------------------------------EEe-ccCCCCEEEEEE
Q 004207          564 SPDGK--LLATGGHDKKAVLWCTESFTVK-----------------------------------STL-EEHTQWITDVRF  605 (768)
Q Consensus       564 Spdg~--~LaSgs~Dg~I~VWdl~t~~~~-----------------------------------~tl-~~h~~~V~sl~f  605 (768)
                      .++++  .++..+.|++|++|.+......                                   +.+ ..|+..|.+|.+
T Consensus        93 ~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~  172 (433)
T KOG1354|consen   93 LDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISV  172 (433)
T ss_pred             cCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeee
Confidence            98765  5777889999999976431110                                   111 258888999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCC--eeEEEeecCC-----CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeE--
Q 004207          606 SPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHS-----TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--  676 (768)
Q Consensus       606 spdg~~LaTgs~DgtIrVWDl~t~~--~~~~~~~~h~-----~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i--  676 (768)
                      +.|...++++ .|-.|.+|+++-..  ..+.-++.+.     .-|++..|||....+|+-.+..|+|++-|+|....-  
T Consensus       173 NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~  251 (433)
T KOG1354|consen  173 NSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA  251 (433)
T ss_pred             cCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc
Confidence            9999888886 67789999987433  2233333332     458899999998888988889999999999943211  


Q ss_pred             --EEEec-------------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCC
Q 004207          677 --GVFKC-------------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK  741 (768)
Q Consensus       677 --~~~~~-------------~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~  741 (768)
                        ..+..             -..|..+.|++.|+++++-.. -+|++||+...........++-+  ...++..+.. .+
T Consensus       252 hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~--lr~kLc~lYE-nD  327 (433)
T KOG1354|consen  252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEY--LRSKLCSLYE-ND  327 (433)
T ss_pred             hhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHh--HHHHHHHHhh-cc
Confidence              11110             134678999999998887543 67999998543222111111111  1111111111 11


Q ss_pred             C---eeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          742 L---VSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       742 ~---I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .   -..++|+.++.+++|||....+++|+
T Consensus       328 ~IfdKFec~~sg~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  328 AIFDKFECSWSGNDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             chhheeEEEEcCCcceEecccccceEEEec
Confidence            1   24688998889999999999999885

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=1.6e-09  Score=123.23  Aligned_cols=172  Identities=12%  Similarity=0.074  Sum_probs=118.9

Q ss_pred             CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCC
Q 004207          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  653 (768)
Q Consensus       577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D---gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~  653 (768)
                      ..|.+||..... ...+..+...+.+.+|+||++.|+.++.+   ..|++||+.++..  ..+..+.+...++.|+|+|+
T Consensus       184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~  260 (433)
T PRK04922        184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR  260 (433)
T ss_pred             EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence            368899986543 44555677789999999999999988754   3699999987664  23333445566889999999


Q ss_pred             eEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc-CCe--EEEEECCCceEeeecceeEEeec
Q 004207          654 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY--ISILDVETQVCRLKLQTLELWNM  728 (768)
Q Consensus       654 ~lLaSgs~Dg--~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~-Dg~--I~IwD~~t~~~~~~~~~I~iwd~  728 (768)
                      .++++.+.++  .|++||+.+++.............++|+|++.++++++. ++.  |+++|+.++.             
T Consensus       261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~-------------  327 (433)
T PRK04922        261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS-------------  327 (433)
T ss_pred             EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-------------
Confidence            8887776665  599999998876554433344567899999998887764 333  5555554432             


Q ss_pred             CCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC---cEEEeC
Q 004207          729 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDK---CVKIWK  768 (768)
Q Consensus       729 ~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG---~V~IWD  768 (768)
                          ...+..+......++|+|+|++|+..+.++   .|.+||
T Consensus       328 ----~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d  366 (433)
T PRK04922        328 ----AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMD  366 (433)
T ss_pred             ----eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEE
Confidence                222222223345789999999988776443   477775

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.13  E-value=1.8e-08  Score=111.91  Aligned_cols=247  Identities=13%  Similarity=0.151  Sum_probs=146.1

Q ss_pred             cccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcE
Q 004207          501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKA  579 (768)
Q Consensus       501 ~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs-~Dg~I  579 (768)
                      .+.+.++++.+.+.|+.|.+++....                   +.+..++... ...++++|+||+++++++ .++.|
T Consensus        43 ~~s~Dgr~~yv~~rdg~vsviD~~~~-------------------~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v  102 (369)
T PF02239_consen   43 KFSPDGRYLYVANRDGTVSVIDLATG-------------------KVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTV  102 (369)
T ss_dssp             E-TT-SSEEEEEETTSEEEEEETTSS-------------------SEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEE
T ss_pred             EecCCCCEEEEEcCCCeEEEEECCcc-------------------cEEEEEecCC-CcceEEEcCCCCEEEEEecCCCce
Confidence            35667788888888999998855333                   1233333333 367899999999988765 68999


Q ss_pred             EEEECCCCeEEEEeccC-------CCCEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCC
Q 004207          580 VLWCTESFTVKSTLEEH-------TQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS  651 (768)
Q Consensus       580 ~VWdl~t~~~~~tl~~h-------~~~V~sl~fspdg~~LaTgs~D-gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~  651 (768)
                      .|+|.++.+.+..+...       ...+..|..+|....++..-.| +.|.+.|....+.................|+|+
T Consensus       103 ~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpd  182 (369)
T PF02239_consen  103 SVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPD  182 (369)
T ss_dssp             EEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TT
T ss_pred             eEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcc
Confidence            99999999999877532       3467888888887766655554 788888887765444344445567889999999


Q ss_pred             CCeEEEEEeCCCcEEEEECCCCeeEEEEecC-----CCeeEEEEecCCCEEE----------EEEcCCeEEEEECCCceE
Q 004207          652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQMRFQPRLGRIL----------AAAIENYISILDVETQVC  716 (768)
Q Consensus       652 g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-----~~i~sl~fsp~~~~ll----------ags~Dg~I~IwD~~t~~~  716 (768)
                      +++++++...+..|-++|..+++.+..+...     ..+..+ .+|..+.+.          +.-..+.+.+||..+.+.
T Consensus       183 gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv  261 (369)
T PF02239_consen  183 GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV  261 (369)
T ss_dssp             SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE
T ss_pred             cceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeE
Confidence            9988887777889999999988877665431     111111 123222111          222222333444444333


Q ss_pred             eeecc----------------------------eeEEeecCCCceEE-ecc-CCCCeeEEEEeCCCCEEEEEECC--CcE
Q 004207          717 RLKLQ----------------------------TLELWNMTENKTLT-LSA-HDKLVSSLAASTVNGMVASASHD--KCV  764 (768)
Q Consensus       717 ~~~~~----------------------------~I~iwd~~~~~~~~-l~~-H~~~I~sla~spdg~~LaSgs~D--G~V  764 (768)
                      +..+.                            .|.++|..+.+... +.. -...+..+.|+++|+++..+..|  |.|
T Consensus       262 v~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i  341 (369)
T PF02239_consen  262 VKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAI  341 (369)
T ss_dssp             EEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEE
T ss_pred             EEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEE
Confidence            33222                            56666766655442 221 12348899999999977666543  368


Q ss_pred             EEeC
Q 004207          765 KIWK  768 (768)
Q Consensus       765 ~IWD  768 (768)
                      .|||
T Consensus       342 ~v~D  345 (369)
T PF02239_consen  342 VVYD  345 (369)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8886

...

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.13  E-value=4.8e-09  Score=118.25  Aligned_cols=172  Identities=13%  Similarity=0.108  Sum_probs=120.1

Q ss_pred             CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCC
Q 004207          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  653 (768)
Q Consensus       577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D---gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~  653 (768)
                      ..|.++|..... ...+..+...+.+.+|+||+++|+.++.+   ..|++||+.++..  ..+..+...+.+++|+|+++
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS  246 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence            358888876444 34455566778999999999999887754   3799999988753  23334556677899999999


Q ss_pred             eEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCceEeeecceeEEeec
Q 004207          654 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQTLELWNM  728 (768)
Q Consensus       654 ~lLaSgs~Dg--~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~D-g--~I~IwD~~t~~~~~~~~~I~iwd~  728 (768)
                      .++++.+.++  .|++||+.++................|+|++.+|+.++.. +  .|+++|+.+.              
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~--------------  312 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG--------------  312 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC--------------
Confidence            8887776554  5888999877654444333445577899999988877643 2  4555555443              


Q ss_pred             CCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC---cEEEeC
Q 004207          729 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDK---CVKIWK  768 (768)
Q Consensus       729 ~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG---~V~IWD  768 (768)
                         +...+..+...+..++|+|++++|+.++.++   .|.+||
T Consensus       313 ---~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d  352 (417)
T TIGR02800       313 ---EVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMD  352 (417)
T ss_pred             ---CEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEe
Confidence               2223333445567889999999998888765   566664

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=1.2e-08  Score=115.87  Aligned_cols=198  Identities=15%  Similarity=0.077  Sum_probs=121.2

Q ss_pred             CCCCCeEEEEEcCCCCE--E-EEEeCCC--cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-CC----cEE
Q 004207          553 ASTSKVESCHFSPDGKL--L-ATGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR----TVR  622 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~--L-aSgs~Dg--~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~-Dg----tIr  622 (768)
                      .+...+.+-+|||||+.  + ++...++  .|.+.++.+++..... ...+.....+|+|||+.|+..+. +|    .+.
T Consensus       182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~  260 (428)
T PRK01029        182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQ  260 (428)
T ss_pred             cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCCCEEEEEECCCCCcceeEE
Confidence            34556778899999974  2 2444444  4777888877644332 23445567899999988877653 22    345


Q ss_pred             EEECCCC--CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEE--ECCC-CeeEEEEe-cCCCeeEEEEecCCCE
Q 004207          623 VWDTENP--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW--SINN-GSCAGVFK-CQSGATQMRFQPRLGR  696 (768)
Q Consensus       623 VWDl~t~--~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iW--Dl~s-g~~i~~~~-~~~~i~sl~fsp~~~~  696 (768)
                      +|++..+  .........+.......+|+|+|+.++++...+|...+|  ++.. +.....+. ....+....|+|++..
T Consensus       261 ~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~  340 (428)
T PRK01029        261 SFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK  340 (428)
T ss_pred             EeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCE
Confidence            5777653  222233333334456789999999888777767755555  4432 22233333 2345678899999999


Q ss_pred             EEEEEcCC---eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC-C--CcEEEeC
Q 004207          697 ILAAAIEN---YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-D--KCVKIWK  768 (768)
Q Consensus       697 llags~Dg---~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~-D--G~V~IWD  768 (768)
                      |+..+.++   .|.+||+.++                 +...+......+....|+|||++|+..+. +  ..|++||
T Consensus       341 Laf~~~~~g~~~I~v~dl~~g-----------------~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd  401 (428)
T PRK01029        341 IAFCSVIKGVRQICVYDLATG-----------------RDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS  401 (428)
T ss_pred             EEEEEcCCCCcEEEEEECCCC-----------------CeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence            88776542   3555555443                 33333333345677899999988775443 2  3455543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.10  E-value=2.7e-09  Score=124.82  Aligned_cols=150  Identities=19%  Similarity=0.259  Sum_probs=126.4

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCC
Q 004207          562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST  641 (768)
Q Consensus       562 ~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~  641 (768)
                      -++++.-++++|+.-+.|.+|+....+.-..+.+|.+.|.++.|+-||++++++|.|.++|+|++++.+.......+|..
T Consensus       140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa  219 (967)
T KOG0974|consen  140 GDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA  219 (967)
T ss_pred             eccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc
Confidence            34556668999999999999998744444468899999999999999999999999999999999998875557788999


Q ss_pred             CeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004207          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQV  715 (768)
Q Consensus       642 ~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~  715 (768)
                      .|..++|+|.   .++|++.|.+.++|+.. +....++..  ...+..++..+....+++++.|+.+++||.....
T Consensus       220 Rvw~~~~~~n---~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  220 RVWACCFLPN---RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             eeEEEEeccc---eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence            9999999987   67799999999999765 344445543  4568999999998889999999999999986643

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.10  E-value=6e-10  Score=135.06  Aligned_cols=189  Identities=22%  Similarity=0.289  Sum_probs=148.0

Q ss_pred             ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004207          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (768)
Q Consensus       502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~V  581 (768)
                      -++...+..+|+-||.|++|....+                ..+...++  +....|+.+.|+..|+.+.++..||.+.+
T Consensus      2216 sHp~~~~Yltgs~dgsv~~~~w~~~----------------~~v~~~rt--~g~s~vtr~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2216 SHPSDPYYLTGSQDGSVRMFEWGHG----------------QQVVCFRT--AGNSRVTRSRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred             CCCCCceEEecCCCceEEEEeccCC----------------CeEEEeec--cCcchhhhhhhcccCCceeeeccCCceee
Confidence            3667888899999999999954322                12222222  22378999999999999999999999999


Q ss_pred             EECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe---CCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207          582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (768)
Q Consensus       582 Wdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs---~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS  658 (768)
                      |.+. .++....+.|.....+++|-.  ..+++++   .++.+.+||..-....-...++|.+.++++++.|... +|++
T Consensus      2278 ~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-llis 2353 (2439)
T KOG1064|consen 2278 WQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LLIS 2353 (2439)
T ss_pred             cccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EEEe
Confidence            9987 677778899999999999975  6677764   3679999997543322223388999999999999855 7779


Q ss_pred             EeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc
Q 004207          659 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (768)
Q Consensus       659 gs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~  721 (768)
                      |+.+|.|++||++..+.++.+..        ++ ...++++++..|.|+||++.....++.+.
T Consensus      2354 ggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             cCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            99999999999998888777764        44 45789999999999999998875555443

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.08  E-value=2.9e-09  Score=124.57  Aligned_cols=190  Identities=16%  Similarity=0.239  Sum_probs=148.8

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCC----EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 004207          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~----V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~  633 (768)
                      |....+.-+.+.++.++.+..+.+||...+.....+......    ..-+-++++.-++++|+.-+.|.+|+....+.+ 
T Consensus        90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p-  168 (967)
T KOG0974|consen   90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP-  168 (967)
T ss_pred             ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc-
Confidence            444555557778888888999999999887777666433322    112334667778999999999999999844432 


Q ss_pred             EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE--EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 004207          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAAIENYISILDV  711 (768)
Q Consensus       634 ~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~--~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~  711 (768)
                      ..+.+|.+.|.++.|+.+|. +++++++|.++++|++++.+...  .|.+...+..++|+|.  ++++++.|.+.++|+.
T Consensus       169 ~~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~  245 (967)
T KOG0974|consen  169 IRLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV  245 (967)
T ss_pred             ceecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence            36889999999999999977 67799999999999999877654  4556788999999998  9999999999999965


Q ss_pred             CCceEeeecceeEEeecCCCceEEeccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          712 ETQVCRLKLQTLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       712 ~t~~~~~~~~~I~iwd~~~~~~~~l~~H~-~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ......                 ++..|. ..|..++..++...++|++.||.+++||
T Consensus       246 ~~~~l~-----------------~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~  286 (967)
T KOG0974|consen  246 NGTQLE-----------------VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD  286 (967)
T ss_pred             ccceeh-----------------hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence            543221                 233454 4589999999999999999999999996

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.06  E-value=3.1e-08  Score=112.39  Aligned_cols=178  Identities=16%  Similarity=0.098  Sum_probs=112.7

Q ss_pred             CeEEEEEcCCCCEEEEEeC-CC----cEEEEECCCC---eEEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEE--E
Q 004207          557 KVESCHFSPDGKLLATGGH-DK----KAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW--D  625 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~-Dg----~I~VWdl~t~---~~~~tl~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVW--D  625 (768)
                      .....+|||||+.|+..+. +|    .+.+|++..+   +.......+...+...+|+|||+.|+..+ .+|...||  +
T Consensus       232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~  311 (428)
T PRK01029        232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ  311 (428)
T ss_pred             CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence            3456899999998876543 22    3444776642   33333333333456789999999877665 46655555  4


Q ss_pred             CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC--CcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcC
Q 004207          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE  703 (768)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D--g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~D  703 (768)
                      +.........+..+...+....|+|+|+.+++++..+  ..|.+||+.+++..........+....|+|++..|+..+.+
T Consensus       312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~  391 (428)
T PRK01029        312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGN  391 (428)
T ss_pred             CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECC
Confidence            4422222444554556778899999999887776544  36999999988775544444456789999999988766543


Q ss_pred             ---CeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC
Q 004207          704 ---NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV  751 (768)
Q Consensus       704 ---g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd  751 (768)
                         ..|+++|+.++                 +...+....+.+...+|+|-
T Consensus       392 ~g~~~L~~vdl~~g-----------------~~~~Lt~~~g~~~~p~Ws~~  425 (428)
T PRK01029        392 SNESELYLISLITK-----------------KTRKIVIGSGEKRFPSWGAF  425 (428)
T ss_pred             CCCceEEEEECCCC-----------------CEEEeecCCCcccCceecCC
Confidence               34555555443                 33333334455667788764

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.04  E-value=1.6e-08  Score=112.57  Aligned_cols=184  Identities=17%  Similarity=0.254  Sum_probs=140.9

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEecc---CCCCEEEEEEc------C--------------CCCEEEEEeCCCcE
Q 004207          565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFS------P--------------SLSRLATSSADRTV  621 (768)
Q Consensus       565 pdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~---h~~~V~sl~fs------p--------------dg~~LaTgs~DgtI  621 (768)
                      |...|||....||.++||++..++....+..   -++..++..|.      |              +-..++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4567899999999999999988877655532   12334444552      1              22467788889999


Q ss_pred             EEEECCCCCeeEEEe-ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEE
Q 004207          622 RVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA  699 (768)
Q Consensus       622 rVWDl~t~~~~~~~~-~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~lla  699 (768)
                      .+|++..++...+.. .+|.+.|.++.++.+-. .|.+++.|+.+.+|+......++.+.. ...+.+++++|++..+++
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~  161 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT  161 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence            999999887644433 56999999999987744 677999999999999999999998886 455889999999888887


Q ss_pred             EEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC-----CCEEEEE-ECCCcEEEe
Q 004207          700 AAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV-----NGMVASA-SHDKCVKIW  767 (768)
Q Consensus       700 gs~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd-----g~~LaSg-s~DG~V~IW  767 (768)
                      ++  +.|.+||+++.+.+                .+|.+|.++|.++.|...     |.+|.++ ..+..+.+|
T Consensus       162 as--~~ik~~~~~~kevv----------------~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w  217 (541)
T KOG4547|consen  162 AS--RQIKVLDIETKEVV----------------ITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW  217 (541)
T ss_pred             cc--ceEEEEEccCceEE----------------EEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence            76  57888888876553                356799999999999876     5565554 456667776

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.03  E-value=4e-09  Score=116.31  Aligned_cols=163  Identities=17%  Similarity=0.270  Sum_probs=133.6

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc------CCC-----CEEEEEEcCCCCEEEEEeCCC
Q 004207          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------HTQ-----WITDVRFSPSLSRLATSSADR  619 (768)
Q Consensus       551 l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~------h~~-----~V~sl~fspdg~~LaTgs~Dg  619 (768)
                      +....+.|++|..++...+|++|+.||.|-.||..+...+.++..      |.+     .|+++.|+.+|-.+++|..+|
T Consensus       171 ~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G  250 (703)
T KOG2321|consen  171 FETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG  250 (703)
T ss_pred             cccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC
Confidence            334457899999999999999999999999999887665555432      333     399999999999999999999


Q ss_pred             cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC-CeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEE
Q 004207          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL  698 (768)
Q Consensus       620 tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g-~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~ll  698 (768)
                      .|.|||+++....+..-.+..-+|..++|.+.+ ...+++++ ...++|||-.+|+....+.....+..+|+-|+++.++
T Consensus       251 ~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f  329 (703)
T KOG2321|consen  251 SVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFF  329 (703)
T ss_pred             cEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCceEE
Confidence            999999998776555555567789999997753 33555655 6789999999999999998888899999999999999


Q ss_pred             EEEcCCeEEEEECCCc
Q 004207          699 AAAIENYISILDVETQ  714 (768)
Q Consensus       699 ags~Dg~I~IwD~~t~  714 (768)
                      ++-.+..+..|-+...
T Consensus       330 ~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  330 TANESSKMHTYYIPSL  345 (703)
T ss_pred             EecCCCcceeEEcccc
Confidence            9998888877766543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.02  E-value=4.4e-07  Score=100.21  Aligned_cols=205  Identities=11%  Similarity=0.135  Sum_probs=135.1

Q ss_pred             CCeEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--e--EEEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 004207          556 SKVESCHFSPDGKLLATGGH----DKKAVLWCTESF--T--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT  626 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~----Dg~I~VWdl~t~--~--~~~tl~~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl  626 (768)
                      .....++++|++++|+++..    ++.|..|++...  +  .+............|+++|++++|+++.. +|+|.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            34667899999999998876    568999987653  3  33344333455678999999999999886 889999999


Q ss_pred             CCCCeeEE---Eee----------cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe--eEE--EE--ecCCCeeE
Q 004207          627 ENPDYSLR---TFT----------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAG--VF--KCQSGATQ  687 (768)
Q Consensus       627 ~t~~~~~~---~~~----------~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~--~i~--~~--~~~~~i~s  687 (768)
                      ........   .+.          .......++.|+|+++.++++.-....|.+|++....  ...  .+  ........
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh  196 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH  196 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence            87432221   111          1234578999999999888777667789999997654  322  22  33567889


Q ss_pred             EEEecCCCEEEEEE-cCCeEEEEECC--CceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC-CCc
Q 004207          688 MRFQPRLGRILAAA-IENYISILDVE--TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-DKC  763 (768)
Q Consensus       688 l~fsp~~~~llags-~Dg~I~IwD~~--t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~-DG~  763 (768)
                      ++|+|++.++++.. .++.|.+|++.  ++.. ..   +........   . .........|+++|++++|+++.. ++.
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~-~~---~~~~~~~~~---~-~~~~~~~~~i~ispdg~~lyvsnr~~~s  268 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL-TE---IQTISTLPE---G-FTGENAPAEIAISPDGRFLYVSNRGSNS  268 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEETTTTEE-EE---EEEEESCET---T-SCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeecccCCce-eE---EEEeeeccc---c-ccccCCceeEEEecCCCEEEEEeccCCE
Confidence            99999999987776 47889999887  3321 11   111110000   0 011235788999999998887764 566


Q ss_pred             EEEeC
Q 004207          764 VKIWK  768 (768)
Q Consensus       764 V~IWD  768 (768)
                      |.+|+
T Consensus       269 I~vf~  273 (345)
T PF10282_consen  269 ISVFD  273 (345)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.01  E-value=2e-09  Score=117.56  Aligned_cols=173  Identities=14%  Similarity=0.220  Sum_probs=130.7

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004207          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (768)
Q Consensus       547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t-------~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg  619 (768)
                      .+..+.+|...|..++--.+.+.|++++.|++|++|.++.       ..+..++..|+.+|.++.|-.+.++++++  ||
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            3556789999999888777788899999999999998753       34778899999999999999888777664  89


Q ss_pred             cEEEEECCCCCeeEEEe-ecCCCCeEEEEEeCC--CCeEEEEEeCCCcEEEEECCCCeeEEEEec------CCCeeEEEE
Q 004207          620 TVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRF  690 (768)
Q Consensus       620 tIrVWDl~t~~~~~~~~-~~h~~~V~slafsp~--g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~------~~~i~sl~f  690 (768)
                      .|++||.--+....... ....+.+..+...++  ...+++.|+...+|+++|.+.++.+..++.      ...+.+++.
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            99999976544322111 111223333333333  333455558889999999999887777764      234788999


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCceEeeecc
Q 004207          691 QPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (768)
Q Consensus       691 sp~~~~llags~Dg~I~IwD~~t~~~~~~~~  721 (768)
                      .+.|++++++-+.|+|.+.|.++++.+..++
T Consensus       885 a~~GN~lAa~LSnGci~~LDaR~G~vINswr  915 (1034)
T KOG4190|consen  885 ADKGNKLAAALSNGCIAILDARNGKVINSWR  915 (1034)
T ss_pred             ccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence            9999999999999999999999998765443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.97  E-value=5.9e-09  Score=108.99  Aligned_cols=209  Identities=20%  Similarity=0.314  Sum_probs=138.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----EEEEeccCC------------CCEEEEEEcCCC--CEEEEE
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHT------------QWITDVRFSPSL--SRLATS  615 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~-----~~~tl~~h~------------~~V~sl~fspdg--~~LaTg  615 (768)
                      .+-|.+|.|..+|.+||+|..+|.|.+|..+...     ....+..|.            ..|..|+|.+++  ..++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            4568999999999999999999999999644322     233333333            358899999864  467778


Q ss_pred             eCCCcEEEEECCCCCeeE----------------------------------E-EeecCCCCeEEEEEeCCCCeEEEEEe
Q 004207          616 SADRTVRVWDTENPDYSL----------------------------------R-TFTGHSTTVMSLDFHPSKEDLLCSCD  660 (768)
Q Consensus       616 s~DgtIrVWDl~t~~~~~----------------------------------~-~~~~h~~~V~slafsp~g~~lLaSgs  660 (768)
                      +.|++|++|.+.......                                  + .-.+|.-.|.+|.++.|...++ +++
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SAD  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SAD  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ecc
Confidence            899999999875321100                                  1 1235777899999999988655 554


Q ss_pred             CCCcEEEEECCCC-eeEEEE--ec------CCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCceEeeecceeEEeecCC
Q 004207          661 NNSEIRYWSINNG-SCAGVF--KC------QSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQTLELWNMTE  730 (768)
Q Consensus       661 ~Dg~I~iWDl~sg-~~i~~~--~~------~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~  730 (768)
                       |-.|.+|+++-- .+....  +.      ..-|++..|+|... .++..++.|+|++-|++.........  .++....
T Consensus       184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs--KlfEepe  260 (433)
T KOG1354|consen  184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHS--KLFEEPE  260 (433)
T ss_pred             -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchh--hhhcccc
Confidence             788999998632 222222  11      22378889999754 46667789999999998643321111  1111111


Q ss_pred             Cc-eE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          731 NK-TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       731 ~~-~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .. .. .+..--..|..+.|+++|+|+++-+. -+|+|||
T Consensus       261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD  299 (433)
T KOG1354|consen  261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWD  299 (433)
T ss_pred             CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEe
Confidence            10 00 12222346889999999999987654 5899997

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.95  E-value=1.2e-07  Score=102.62  Aligned_cols=147  Identities=16%  Similarity=0.159  Sum_probs=116.4

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004207          552 PASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (768)
Q Consensus       552 ~~H~~~I~sl~fSpdg~~LaSgs~Dg-~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~  630 (768)
                      -+|.+.|.-..+..+++-++.|..|| .|-|||.++++... +...-+.|.++..+++|++++.+.....|.+.|++++.
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            36777888888988999999999999 89999999877654 44556789999999999999999888999999999987


Q ss_pred             eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC----CcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE
Q 004207          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA  701 (768)
Q Consensus       631 ~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D----g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags  701 (768)
                      . ...-....+-|+.++|||+++++ |-+--+    ..|+++|+..++........+.-.+-+|.|++++|+.-+
T Consensus       435 v-~~idkS~~~lItdf~~~~nsr~i-AYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         435 V-RLIDKSEYGLITDFDWHPNSRWI-AYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             e-eEecccccceeEEEEEcCCceeE-EEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence            5 33333455789999999998744 444333    469999999988877766555556678888888876654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.94  E-value=9.5e-08  Score=108.55  Aligned_cols=163  Identities=12%  Similarity=0.026  Sum_probs=110.3

Q ss_pred             cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCe
Q 004207          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  654 (768)
Q Consensus       578 ~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D---gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~  654 (768)
                      .|.++|.+..+. ..+..+...+...+|+|||+.|+..+.+   ..|.+||+.+++.  ..+....+.+.+..|+|+|+.
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~  256 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK  256 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence            477888876544 4454567789999999999998877654   3699999987763  233333445667899999998


Q ss_pred             EEEEEeCCC--cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc-CC--eEEEEECCCceEeeecceeEEeecC
Q 004207          655 LLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQTLELWNMT  729 (768)
Q Consensus       655 lLaSgs~Dg--~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~-Dg--~I~IwD~~t~~~~~~~~~I~iwd~~  729 (768)
                      ++++.+.++  .|++||+.++................|+|++..++..+. ++  .|+++|+.++..             
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-------------  323 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-------------  323 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-------------
Confidence            887776665  688889998776554433444667889999998877664 22  466666655432             


Q ss_pred             CCceEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 004207          730 ENKTLTLSAHDKLVSSLAASTVNGMVASASH  760 (768)
Q Consensus       730 ~~~~~~l~~H~~~I~sla~spdg~~LaSgs~  760 (768)
                          ..+..........+|+|++++|+..+.
T Consensus       324 ----~~lt~~~~~~~~~~~Spdg~~i~~~~~  350 (430)
T PRK00178        324 ----ERVTFVGNYNARPRLSADGKTLVMVHR  350 (430)
T ss_pred             ----EEeecCCCCccceEECCCCCEEEEEEc
Confidence                111111122345689999988877764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.93  E-value=7.8e-08  Score=109.87  Aligned_cols=170  Identities=12%  Similarity=0.081  Sum_probs=111.1

Q ss_pred             cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCe
Q 004207          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  654 (768)
Q Consensus       578 ~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D-g--tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~  654 (768)
                      .|.++|.+.... ..+..+...+.+..|+|||+.|+..+.+ +  .|++||+.+++.  ..+....+.....+|+|+|+.
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~  275 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKK  275 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCE
Confidence            577778765443 3444566788999999999988876543 3  588999987664  222222334457899999998


Q ss_pred             EEEEEeCCCc--EEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc-CC--eEEEEECCCceEeeecceeEEeecC
Q 004207          655 LLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQTLELWNMT  729 (768)
Q Consensus       655 lLaSgs~Dg~--I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~-Dg--~I~IwD~~t~~~~~~~~~I~iwd~~  729 (768)
                      ++++.+.++.  |++||+.+++..............+|+|++.+++..+. ++  .|+++|+.++.              
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~--------------  341 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK--------------  341 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--------------
Confidence            8887777775  77889988776554444445677899999998877664 23  34555554432              


Q ss_pred             CCceEEeccCCCCeeEEEEeCCCCEEEEEEC-CCcEEEe
Q 004207          730 ENKTLTLSAHDKLVSSLAASTVNGMVASASH-DKCVKIW  767 (768)
Q Consensus       730 ~~~~~~l~~H~~~I~sla~spdg~~LaSgs~-DG~V~IW  767 (768)
                         ...+..+.......+|+|+|++|+..+. ++...||
T Consensus       342 ---~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~  377 (448)
T PRK04792        342 ---VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIA  377 (448)
T ss_pred             ---EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEE
Confidence               2222111222345689999988877655 4444444

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.91  E-value=1.1e-08  Score=103.48  Aligned_cols=254  Identities=11%  Similarity=0.171  Sum_probs=152.4

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      .+..++++..++.+.++     ...+......|+-..+  ...++++..|.++-.+-+.+--+.-++++..||.+.+++.
T Consensus        46 ~~~~lf~~e~~~~~ss~-----g~~r~~~~~~~~rt~~--i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~  118 (319)
T KOG4714|consen   46 AEYILFTGETSSQIISL-----GKGRGRCISLWERDDG--IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST  118 (319)
T ss_pred             hhheeecccchhheeee-----ccceEEEechhhcccC--cCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence            34566777777777766     2233333344443322  2345555566665555555556778999999999999987


Q ss_pred             CCCe-EEEEeccCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207          585 ESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (768)
Q Consensus       585 ~t~~-~~~tl~~h~~~V~sl~fspdg~~LaTgs~-----DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS  658 (768)
                      +... ....+..-...-.+.++...++.+.++..     -+..++|+++..+..+..... ...|++++-||.-.+++++
T Consensus       119 ~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~c  197 (319)
T KOG4714|consen  119 DKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCC  197 (319)
T ss_pred             hHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccc-cccchhhhCCcccccEEEE
Confidence            6511 11111111111223333334444444321     234567777654332222222 2349999999999999999


Q ss_pred             EeCCCcEEEEECCCCeeEEEE-e-cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCceEeeecc--eeEEee---cCC
Q 004207          659 CDNNSEIRYWSINNGSCAGVF-K-CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQ--TLELWN---MTE  730 (768)
Q Consensus       659 gs~Dg~I~iWDl~sg~~i~~~-~-~~~~i~sl~fsp~~-~~llags~Dg~I~IwD~~t~~~~~~~~--~I~iwd---~~~  730 (768)
                      |+.||.|.+||.++......+ + ++..+..+-|+|.. ..|++++.||.+..||..+........  .+..|=   ...
T Consensus       198 gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~  277 (319)
T KOG4714|consen  198 GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVK  277 (319)
T ss_pred             ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCccc
Confidence            999999999999987543322 2 36778999999864 469999999999999998643222111  233441   111


Q ss_pred             CceE---EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          731 NKTL---TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       731 ~~~~---~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ..+.   .+....-.|+++.+.  |..|++|++-+.|++++
T Consensus       278 s~i~i~~ll~~~~~SinsfDV~--g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  278 SRIEITSLLPSRSLSINSFDVL--GPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             ceEeeeccccccceeeeeeecc--CceEEeccccceEEEec
Confidence            1111   111223346666655  88999999999999874

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.90  E-value=4.3e-09  Score=118.56  Aligned_cols=210  Identities=19%  Similarity=0.278  Sum_probs=154.8

Q ss_pred             EecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCe-EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          550 LIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (768)
Q Consensus       550 ~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl~t~~-~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~  627 (768)
                      .+.+|...|+.+-|+|.. ..+++++.|-.|..||+.+-. .+..+..-......|+|+-....+.+.+....|+|||++
T Consensus       109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r  188 (1081)
T KOG0309|consen  109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR  188 (1081)
T ss_pred             EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence            457999999999999955 479999999999999998743 333443334456789998755555566778889999999


Q ss_pred             CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC--eeEEEEecCCCeeEEEEecCCCEEE--EEEcC
Q 004207          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKCQSGATQMRFQPRLGRIL--AAAIE  703 (768)
Q Consensus       628 t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg--~~i~~~~~~~~i~sl~fsp~~~~ll--ags~D  703 (768)
                      .+..++..+++|...|..++|..-....+.+++.|++|++||....  +..+.+....+|..-++.|-+.-.+  ---.+
T Consensus       189 ~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~  268 (1081)
T KOG0309|consen  189 KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGG  268 (1081)
T ss_pred             CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCC
Confidence            9998899999999999999998766667779999999999998753  3344555567777778888654322  22334


Q ss_pred             CeEEEEECCCceEeeecceeEEeecCCC--ceEEeccCCCCeeEEEEeCCC----------CEEEEEECCCcEEEe
Q 004207          704 NYISILDVETQVCRLKLQTLELWNMTEN--KTLTLSAHDKLVSSLAASTVN----------GMVASASHDKCVKIW  767 (768)
Q Consensus       704 g~I~IwD~~t~~~~~~~~~I~iwd~~~~--~~~~l~~H~~~I~sla~spdg----------~~LaSgs~DG~V~IW  767 (768)
                      +.|.+++.+..        ...|+..++  .+.++.+|.+.|...-|-..+          -.|+|-|.|.++++|
T Consensus       269 n~v~~~~c~n~--------d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW  336 (1081)
T KOG0309|consen  269 NMVPQLRCENS--------DLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW  336 (1081)
T ss_pred             eeeeeccccch--------hhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence            46666666553        223444332  345788999988877664322          279999999999999

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.89  E-value=1.7e-08  Score=107.81  Aligned_cols=170  Identities=16%  Similarity=0.192  Sum_probs=116.5

Q ss_pred             cccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 004207          496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH  575 (768)
Q Consensus       496 ~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~  575 (768)
                      +.......+..++||++-.+....+|+......             +..+.....+......|..+..+........++.
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-------------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD  130 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPK-------------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGD  130 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCC-------------cceeeeEeecccCcceeeeeeccceEEEEeecCC
Confidence            334444567788888888777766765433321             1112222333333333444444333323334455


Q ss_pred             CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeE
Q 004207          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL  655 (768)
Q Consensus       576 Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~l  655 (768)
                      ...+.+|....+.+. .+-+|-.-+++|+|+||+++|+|+..|..|||-........-....||+..|..++.-++  +.
T Consensus       131 ~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~--~~  207 (390)
T KOG3914|consen  131 VYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN--YL  207 (390)
T ss_pred             ceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC--ce
Confidence            566667776665554 345899999999999999999999999999998887654434556789999999999876  35


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEec
Q 004207          656 LCSCDNNSEIRYWSINNGSCAGVFKC  681 (768)
Q Consensus       656 LaSgs~Dg~I~iWDl~sg~~i~~~~~  681 (768)
                      |++++.|++|++||+++|+++.++..
T Consensus       208 LlS~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  208 LLSGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             eeecCCCCcEEEEecccCCcccccch
Confidence            77999999999999999999877764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.87  E-value=1.2e-06  Score=99.13  Aligned_cols=182  Identities=11%  Similarity=0.040  Sum_probs=119.0

Q ss_pred             CeEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEE-EeCC--CcEEEEECCCC
Q 004207          557 KVESCHFSPDGKL-LATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSAD--RTVRVWDTENP  629 (768)
Q Consensus       557 ~I~sl~fSpdg~~-LaSgs~D---g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaT-gs~D--gtIrVWDl~t~  629 (768)
                      .+....|+|||+. ++..+.+   ..|+++|+.+++...... ..+.+.+..|+|||+.|+. .+.+  ..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6888999999984 6544443   468999998887654443 4555677889999987654 3334  46888888776


Q ss_pred             CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCC---
Q 004207          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN---  704 (768)
Q Consensus       630 ~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg--~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg---  704 (768)
                      .  ...+..+........|+|||+.++++.+..+  .|.++|+.+++.........  ....|+|++.+++..+...   
T Consensus       268 ~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~  343 (419)
T PRK04043        268 T--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNE  343 (419)
T ss_pred             c--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcc
Confidence            5  3344444443455689999998888876555  57778888777644433222  2358999999988777542   


Q ss_pred             ------eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207          705 ------YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD  761 (768)
Q Consensus       705 ------~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D  761 (768)
                            .|.++|+.+                 +....+... .......|+|||+.|+..+.+
T Consensus       344 ~~~~~~~I~v~d~~~-----------------g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        344 FGKNTFNLYLISTNS-----------------DYIRRLTAN-GVNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             cCCCCcEEEEEECCC-----------------CCeEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence                  344444443                 333333222 123357899999877666543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.86  E-value=1.1e-06  Score=109.86  Aligned_cols=206  Identities=15%  Similarity=0.130  Sum_probs=137.2

Q ss_pred             CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEeccC-----------------CCCEEEEEEcC-CCCEEEEEeC
Q 004207          557 KVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEH-----------------TQWITDVRFSP-SLSRLATSSA  617 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs-~Dg~I~VWdl~t~~~~~tl~~h-----------------~~~V~sl~fsp-dg~~LaTgs~  617 (768)
                      .-..|++.++++.|+++. ..+.|+++|..++.. .++.+.                 -....+|+|+| ++.++++.+.
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~  703 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG  703 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence            457899999888766654 456799999877553 333210                 11246899999 5666677777


Q ss_pred             CCcEEEEECCCCCeeEEEeecC---------------CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-
Q 004207          618 DRTVRVWDTENPDYSLRTFTGH---------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-  681 (768)
Q Consensus       618 DgtIrVWDl~t~~~~~~~~~~h---------------~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-  681 (768)
                      ++.|++||..++..  ..+.+.               -.....|+|+|+++.++++...++.|++||+.++........ 
T Consensus       704 ~~~I~v~d~~~g~v--~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~  781 (1057)
T PLN02919        704 QHQIWEYNISDGVT--RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD  781 (1057)
T ss_pred             CCeEEEEECCCCeE--EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence            88999999987643  222111               123567999999988888888889999999987653211100 


Q ss_pred             ---------------------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCC
Q 004207          682 ---------------------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD  740 (768)
Q Consensus       682 ---------------------~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~  740 (768)
                                           ......+++++++..+++-+.++.|++||..++........-. -....+.  ...+.-
T Consensus       782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~-~G~~dG~--~~~a~l  858 (1057)
T PLN02919        782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK-AGFKDGK--ALKAQL  858 (1057)
T ss_pred             cccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCC-cCCCCCc--cccccc
Confidence                                 0123578899998877777788999999998765432211000 0000111  112333


Q ss_pred             CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          741 KLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       741 ~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .....|+++++|.++++-+.++.|++||
T Consensus       859 ~~P~GIavd~dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        859 SEPAGLALGENGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             CCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence            4678999999999888888999999996

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.85  E-value=1e-08  Score=124.68  Aligned_cols=186  Identities=16%  Similarity=0.298  Sum_probs=148.3

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004207          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (768)
Q Consensus       551 l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~  629 (768)
                      ++.|-..|.++.-+|...+.+||+.||.|++|....+..+..+. .....|+.+.|+..|+.+..+..||.+.+|.+.. 
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-
Confidence            34455668888889988999999999999999988777666553 2337899999999999999999999999999983 


Q ss_pred             CeeEEEeecCCCCeEEEEEeCCCCeEEEEEe---CCCcEEEEECCC---CeeEEEEecCCCeeEEEEecCCCEEEEEEcC
Q 004207          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINN---GSCAGVFKCQSGATQMRFQPRLGRILAAAIE  703 (768)
Q Consensus       630 ~~~~~~~~~h~~~V~slafsp~g~~lLaSgs---~Dg~I~iWDl~s---g~~i~~~~~~~~i~sl~fsp~~~~llags~D  703 (768)
                       .+.....+|......+.|..   .++++.+   .++.+.+||.--   ..++. ..+.++++++++.|....+++|+.+
T Consensus      2283 -k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2283 -KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred             -cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCc
Confidence             34778888999999999985   3555543   578999999642   23444 4457889999999999999999999


Q ss_pred             CeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          704 NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       704 g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |.|++||++....++.+.                     .    ++ ...+|++|+..|.|+||+
T Consensus      2358 G~v~l~D~rqrql~h~~~---------------------~----~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQ---------------------A----LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred             CcEEEeehHHHHHHHHhh---------------------h----hh-hhheeeccCcccceEEEE
Confidence            999999998876655443                     1    33 456788888888888885

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.85  E-value=1.1e-07  Score=99.81  Aligned_cols=181  Identities=19%  Similarity=0.296  Sum_probs=123.8

Q ss_pred             ccCCCCCceEEEEecCCCCcc----------cccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCce
Q 004207          475 QHNGASSKSLLMFGSDGMGSL----------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT  544 (768)
Q Consensus       475 ~~s~s~~~~~l~~~~~~~~~~----------~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~  544 (768)
                      ..+.+.++++.+|-.-..+-+          ..+...+....+.|.+|-..+++.-|...++-               ..
T Consensus        39 v~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf---------------nk  103 (404)
T KOG1409|consen   39 VISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF---------------NK  103 (404)
T ss_pred             eEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh---------------hh
Confidence            344556677777655443221          22233445566777888888888777443321               11


Q ss_pred             eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE---------------------------------------EE--
Q 004207          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL---------------------------------------WC--  583 (768)
Q Consensus       545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~V---------------------------------------Wd--  583 (768)
                      ....+....|...|..+-|+-...++++.+.|..+.-                                       ..  
T Consensus       104 m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~  183 (404)
T KOG1409|consen  104 MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLE  183 (404)
T ss_pred             cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEe
Confidence            2234445567777777777666666666666543211                                       11  


Q ss_pred             CCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC
Q 004207          584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (768)
Q Consensus       584 l~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg  663 (768)
                      .....++.++.+|.+.|++++|.+...+|++|..|..|.+||+-..+.....+.+|...|..+...+.-. .+++++.||
T Consensus       184 ~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg  262 (404)
T KOG1409|consen  184 QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR-QLISCGEDG  262 (404)
T ss_pred             ecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe-eeeeccCCC
Confidence            1112345677889999999999999999999999999999999877776788889999999998776644 566999999


Q ss_pred             cEEEEECC
Q 004207          664 EIRYWSIN  671 (768)
Q Consensus       664 ~I~iWDl~  671 (768)
                      .|.+||+.
T Consensus       263 ~i~~w~mn  270 (404)
T KOG1409|consen  263 GIVVWNMN  270 (404)
T ss_pred             eEEEEecc
Confidence            99999986

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=3.2e-07  Score=101.66  Aligned_cols=122  Identities=11%  Similarity=0.236  Sum_probs=84.3

Q ss_pred             EEEEeCCCCeEEEEEe--CC---------CcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE--cCCeEEEEEC
Q 004207          645 SLDFHPSKEDLLCSCD--NN---------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IENYISILDV  711 (768)
Q Consensus       645 slafsp~g~~lLaSgs--~D---------g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags--~Dg~I~IwD~  711 (768)
                      .+.|++.|.-+|+..+  .|         .+++++++...++...+...++|.++.|+|.+..++++.  .-.++.|||+
T Consensus       222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl  301 (566)
T KOG2315|consen  222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL  301 (566)
T ss_pred             EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcC
Confidence            3566666665555433  23         367778887666777777789999999999998766554  4667888887


Q ss_pred             CCceEeeecc--------------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC-----
Q 004207          712 ETQVCRLKLQ--------------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-----  760 (768)
Q Consensus       712 ~t~~~~~~~~--------------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~-----  760 (768)
                      +.... ..+.                          .+++||+...+.+.-.. ...-+-+.|+|||.+|+|++.     
T Consensus       302 r~~~v-~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~-a~~tt~~eW~PdGe~flTATTaPRlr  379 (566)
T KOG2315|consen  302 RGKPV-FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK-AANTTVFEWSPDGEYFLTATTAPRLR  379 (566)
T ss_pred             CCCEe-EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc-cCCceEEEEcCCCcEEEEEeccccEE
Confidence            65322 1111                          89999998866553222 223456899999999999873     


Q ss_pred             -CCcEEEeC
Q 004207          761 -DKCVKIWK  768 (768)
Q Consensus       761 -DG~V~IWD  768 (768)
                       |+.++||+
T Consensus       380 vdNg~Kiwh  388 (566)
T KOG2315|consen  380 VDNGIKIWH  388 (566)
T ss_pred             ecCCeEEEE
Confidence             78899995

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.84  E-value=7.1e-07  Score=99.62  Aligned_cols=144  Identities=19%  Similarity=0.236  Sum_probs=118.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEec--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCe
Q 004207          566 DGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV  643 (768)
Q Consensus       566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~--~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V  643 (768)
                      |...++-|...|.|.+|++..+++...+.  .|.+.|.++.|+.+-..|.+++.|+.+..|+...... ++.+.+....+
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-~~~~~~~~~~~  147 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-IRIWKEQKPLV  147 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-eeeeccCCCcc
Confidence            44468888889999999999999988875  6899999999999999999999999999999987654 78888888899


Q ss_pred             EEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-CCeeEEEEecC-----CCEEEEEE-cCCeEEEEECCC
Q 004207          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPR-----LGRILAAA-IENYISILDVET  713 (768)
Q Consensus       644 ~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-~~i~sl~fsp~-----~~~llags-~Dg~I~IwD~~t  713 (768)
                      .+++.+||+. ++++++  +.|++||+++.+.+..|.++ +.|.++.|.-.     |.+++++. .+..|.+|-++.
T Consensus       148 ~sl~is~D~~-~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  148 SSLCISPDGK-ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ceEEEcCCCC-EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            9999999977 555664  58999999999999999975 55888888766     66666654 455566665543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.80  E-value=7.6e-06  Score=87.13  Aligned_cols=215  Identities=11%  Similarity=0.134  Sum_probs=141.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCC--CeEEE--EeccCCCCEEEEEEcCCCCEEEEEeCC-CcEEEE
Q 004207          553 ASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTES--FTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVW  624 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs~---Dg~I~VWdl~t--~~~~~--tl~~h~~~V~sl~fspdg~~LaTgs~D-gtIrVW  624 (768)
                      .+.+.++-|+|+++.++|.++..   +|.|..|.++.  |++..  .......+-+.|++++++++|+++... |.|.|+
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence            45566888999999999888855   47788777764  44432  112223344889999999999999874 689999


Q ss_pred             ECCCCCee--EEEeecCCCC----------eEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE----EEecCCCeeEE
Q 004207          625 DTENPDYS--LRTFTGHSTT----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG----VFKCQSGATQM  688 (768)
Q Consensus       625 Dl~t~~~~--~~~~~~h~~~----------V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~----~~~~~~~i~sl  688 (768)
                      -+......  ......|.+.          +.+..+.|+++.++++.-..-.|.+|++..|....    .++...+...|
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi  196 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI  196 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence            98653221  1122335444          88899999988666554444579999999776543    23346678899


Q ss_pred             EEecCCCEEEEEE-cCCeEEEEECCCc-eEeeecc-----------------------------------eeEEeecC--
Q 004207          689 RFQPRLGRILAAA-IENYISILDVETQ-VCRLKLQ-----------------------------------TLELWNMT--  729 (768)
Q Consensus       689 ~fsp~~~~llags-~Dg~I~IwD~~t~-~~~~~~~-----------------------------------~I~iwd~~--  729 (768)
                      .|+|++.+.++.+ -+++|.+|..... .....+.                                   .|.+|.+.  
T Consensus       197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~  276 (346)
T COG2706         197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD  276 (346)
T ss_pred             EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence            9999999877766 5899999988774 1111111                                   33334332  


Q ss_pred             CCceEE---eccCCCCeeEEEEeCCCCEEEEEECCC-cEEEe
Q 004207          730 ENKTLT---LSAHDKLVSSLAASTVNGMVASASHDK-CVKIW  767 (768)
Q Consensus       730 ~~~~~~---l~~H~~~I~sla~spdg~~LaSgs~DG-~V~IW  767 (768)
                      ++++..   ...+......+.|++.+++|+++..|+ .|.||
T Consensus       277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf  318 (346)
T COG2706         277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF  318 (346)
T ss_pred             CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence            222221   112333467788888888888888643 46555

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.75  E-value=3.6e-08  Score=101.79  Aligned_cols=252  Identities=16%  Similarity=0.264  Sum_probs=154.8

Q ss_pred             ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCC------------CCeEEEEEc
Q 004207          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST------------SKVESCHFS  564 (768)
Q Consensus       497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~------------~~I~sl~fS  564 (768)
                      +..+.++..+.++++|...|.|.+|......              ++.++.+..+.+|.            ..|..|.|.
T Consensus        29 ItaVefd~tg~YlatGDkgGRVvlfer~~s~--------------~ceykf~teFQshe~EFDYLkSleieEKin~I~w~   94 (460)
T COG5170          29 ITAVEFDETGLYLATGDKGGRVVLFEREKSY--------------GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWF   94 (460)
T ss_pred             eeEEEeccccceEeecCCCceEEEeeccccc--------------ccchhhhhhhcccccchhhhhhccHHHHhhheeee
Confidence            3445566677899999999999999332221              22333333344443            457888887


Q ss_pred             CCCC--EEEEEeCCCcEEEEECCCCe-------------------------------------EEE-----Ee-ccCCCC
Q 004207          565 PDGK--LLATGGHDKKAVLWCTESFT-------------------------------------VKS-----TL-EEHTQW  599 (768)
Q Consensus       565 pdg~--~LaSgs~Dg~I~VWdl~t~~-------------------------------------~~~-----tl-~~h~~~  599 (768)
                      .++.  .++..+.|++|++|.+....                                     .+.     .+ ..|...
T Consensus        95 ~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh  174 (460)
T COG5170          95 DDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH  174 (460)
T ss_pred             cCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE
Confidence            7554  57777899999999764320                                     000     01 247777


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--eeEEEeecCC-----CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC
Q 004207          600 ITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHS-----TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (768)
Q Consensus       600 V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~--~~~~~~~~h~-----~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s  672 (768)
                      |.+|.|+.|...++++ .|-.|.+|+++-..  ..+..++.|.     .-|++..|||....+|.-.+..|+|++-|+|.
T Consensus       175 iNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq  253 (460)
T COG5170         175 INSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ  253 (460)
T ss_pred             eeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence            8999999987777775 67789999987543  3344445553     45888999998777887788899999999984


Q ss_pred             Cee-E---EEE----e---------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEE
Q 004207          673 GSC-A---GVF----K---------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLT  735 (768)
Q Consensus       673 g~~-i---~~~----~---------~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~  735 (768)
                      ... .   ..+    .         ....|..+.|+++|+++++-.. .+|.|||.+..+....  ++.+.+....++..
T Consensus       254 ~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pik--Ti~~h~~l~~~l~d  330 (460)
T COG5170         254 SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIK--TIPMHCDLMDELND  330 (460)
T ss_pred             hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCce--eechHHHHHHHHHh
Confidence            221 0   111    0         0234778899999887776544 6799999877542211  11110000000000


Q ss_pred             eccCCCCe---eEEEEeCCCCEEEEEECCCcEEEe
Q 004207          736 LSAHDKLV---SSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       736 l~~H~~~I---~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      .. ....|   ..+.|+.+...+++|+.....-||
T Consensus       331 ~Y-EnDaifdkFeisfSgd~~~v~sgsy~NNfgiy  364 (460)
T COG5170         331 VY-ENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY  364 (460)
T ss_pred             hh-hccceeeeEEEEecCCcccccccccccceeee
Confidence            00 01112   246677777777787776655443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.72  E-value=1e-05  Score=88.75  Aligned_cols=200  Identities=13%  Similarity=0.111  Sum_probs=114.2

Q ss_pred             EcCCCCEEEEEeC----------CCcEEEEECCCCeEEEEeccCCC-------CEEEEEEcCCCCEEEEEeC--CCcEEE
Q 004207          563 FSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPSLSRLATSSA--DRTVRV  623 (768)
Q Consensus       563 fSpdg~~LaSgs~----------Dg~I~VWdl~t~~~~~tl~~h~~-------~V~sl~fspdg~~LaTgs~--DgtIrV  623 (768)
                      +|||++.|+++..          +..|.|||..+.+.+..+.....       ....++++|||++|++...  +..|.|
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8999998877765          77899999999999988864222       2347899999999998763  689999


Q ss_pred             EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-Cee-EEE---Eec-CCCe-eEEEEec-CCC
Q 004207          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSC-AGV---FKC-QSGA-TQMRFQP-RLG  695 (768)
Q Consensus       624 WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~-i~~---~~~-~~~i-~sl~fsp-~~~  695 (768)
                      .|+.+++. +..+.- .++..-+..+++.. ++ -| .||......+.+ ++. ...   +.. ...+ ..-.|.+ ++.
T Consensus       133 vD~~~~kv-v~ei~v-p~~~~vy~t~e~~~-~~-~~-~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~  207 (352)
T TIGR02658       133 VDLEGKAF-VRMMDV-PDCYHIFPTANDTF-FM-HC-RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR  207 (352)
T ss_pred             EECCCCcE-EEEEeC-CCCcEEEEecCCcc-EE-Ee-ecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence            99998775 333332 12222222222211 11 11 233333332221 110 111   111 0000 0013445 444


Q ss_pred             EEEEEEcCCeEEEEECCCc-----eEeeec------------------------------------------ceeEEeec
Q 004207          696 RILAAAIENYISILDVETQ-----VCRLKL------------------------------------------QTLELWNM  728 (768)
Q Consensus       696 ~llags~Dg~I~IwD~~t~-----~~~~~~------------------------------------------~~I~iwd~  728 (768)
                      ++++. .+|.|++.|+...     .....+                                          ..|.++|.
T Consensus       208 ~~~vs-~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~  286 (352)
T TIGR02658       208 LVWPT-YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA  286 (352)
T ss_pred             EEEEe-cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence            44443 3477777774221     110000                                          03555666


Q ss_pred             CCCceEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 004207          729 TENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK  768 (768)
Q Consensus       729 ~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs-~DG~V~IWD  768 (768)
                      .+.+.+....-...+..|+++||++ +|++.. .++.|.|+|
T Consensus       287 ~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD  328 (352)
T TIGR02658       287 KTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD  328 (352)
T ss_pred             CCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence            6666665444455789999999999 887666 578888875

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=5.2e-08  Score=105.06  Aligned_cols=201  Identities=15%  Similarity=0.113  Sum_probs=143.1

Q ss_pred             cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEE
Q 004207          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVL  581 (768)
Q Consensus       503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~-Dg~I~V  581 (768)
                      .....++.++|.|++++.|--..                ......++.++.|-+.|.+++.+-|+.++.|.+. |..+++
T Consensus        17 ~tka~fiiqASlDGh~KFWkKs~----------------isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kv   80 (558)
T KOG0882|consen   17 PTKAKFIIQASLDGHKKFWKKSR----------------ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKV   80 (558)
T ss_pred             eehhheEEeeecchhhhhcCCCC----------------ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeE
Confidence            34567999999999999992111                1223456778899999999999999999999887 999999


Q ss_pred             EECCCCeEEEEecc--CCCCEEEEEEcCC-C-CEEEE-EeCCCcEEEEECCCCCeeE-EEeecCCCCeEEEEEeCCCCeE
Q 004207          582 WCTESFTVKSTLEE--HTQWITDVRFSPS-L-SRLAT-SSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDL  655 (768)
Q Consensus       582 Wdl~t~~~~~tl~~--h~~~V~sl~fspd-g-~~LaT-gs~DgtIrVWDl~t~~~~~-~~~~~h~~~V~slafsp~g~~l  655 (768)
                      +|+++...+.-++.  -.+.+. +..++. . ..|++ .-.++.|.|+|-....+.. ..-.-|..+|.++.+.+.++ .
T Consensus        81 fDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s  158 (558)
T KOG0882|consen   81 FDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-S  158 (558)
T ss_pred             EEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-c
Confidence            99988665533322  122222 112332 1 13333 3447899999987655333 34445899999999999977 4


Q ss_pred             EEEEeCCCcEEEEECCC------CeeEEEE----------ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207          656 LCSCDNNSEIRYWSINN------GSCAGVF----------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK  719 (768)
Q Consensus       656 LaSgs~Dg~I~iWDl~s------g~~i~~~----------~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~  719 (768)
                      +++.+..|.|..|..+.      .+....+          +......++.|+|++..+.+.+.|..|+++++.+++.+..
T Consensus       159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe  238 (558)
T KOG0882|consen  159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE  238 (558)
T ss_pred             eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence            55888889999998872      2222222          2345578999999999999999999999999999876554


Q ss_pred             cc
Q 004207          720 LQ  721 (768)
Q Consensus       720 ~~  721 (768)
                      +.
T Consensus       239 iD  240 (558)
T KOG0882|consen  239 ID  240 (558)
T ss_pred             hh
Confidence            43

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.71  E-value=1.1e-06  Score=90.60  Aligned_cols=158  Identities=14%  Similarity=0.148  Sum_probs=116.7

Q ss_pred             CCeEEEEEcC---CCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCC------CEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          556 SKVESCHFSP---DGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       556 ~~I~sl~fSp---dg~-~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~------~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      ..+..+.|+.   +|. .++-+..+|.|.+|..........+.+-..      ...++.|++.+..++++..+|.+.+-+
T Consensus        70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~  149 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY  149 (339)
T ss_pred             cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence            3456666653   455 567778889999997765444444433211      245788999899999999999998555


Q ss_pred             CCCCC-eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC-CCeeEEE--EecCCCeeEEEEecC-CCEEEEE
Q 004207          626 TENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FKCQSGATQMRFQPR-LGRILAA  700 (768)
Q Consensus       626 l~t~~-~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~-sg~~i~~--~~~~~~i~sl~fsp~-~~~llag  700 (768)
                      ..... ..+..++.|.-+++...|+....+++.+|++|+.+..||+| .++.+..  ..+..+|.++.-+|. ..++++|
T Consensus       150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG  229 (339)
T KOG0280|consen  150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG  229 (339)
T ss_pred             cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence            44332 22457899999999999998888899999999999999999 3344432  234677888887764 5679999


Q ss_pred             EcCCeEEEEECCC
Q 004207          701 AIENYISILDVET  713 (768)
Q Consensus       701 s~Dg~I~IwD~~t  713 (768)
                      +.|..|++||.++
T Consensus       230 sYDe~i~~~DtRn  242 (339)
T KOG0280|consen  230 SYDECIRVLDTRN  242 (339)
T ss_pred             ccccceeeeehhc
Confidence            9999999999985

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.69  E-value=5.4e-07  Score=104.38  Aligned_cols=266  Identities=17%  Similarity=0.222  Sum_probs=171.1

Q ss_pred             eEEEEecCCCCcccccCccccCCCCEEEeecCCCcEEEeecCC-CCCCCCccc------cccccCCCceeeEEEEecCC-
Q 004207          483 SLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPD-DADPRDRVG------RSAEVGKGFTFTEFQLIPAS-  554 (768)
Q Consensus       483 ~~l~~~~~~~~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~-~~d~~~~~~------~~~~~~~~~~~~~~~~l~~H-  554 (768)
                      .-++|..+..+  .+++..++.++..+-.|+..|++..+.... ....+..+-      +......+...-....++.- 
T Consensus        45 ~~L~~~~~~~G--~vS~v~fd~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~~~v~~~~~~~~~i~~ls~~alr~~~  122 (1118)
T KOG1275|consen   45 AELISVGASYG--TVSSVHFDLHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSIDGVRRIEPTESGIFTLSKTALRATT  122 (1118)
T ss_pred             cceeeeccccc--cccccccCchHHhheecccCCceeeeecccccceEEEEEeccchhhhhhhhhhhheeeeHHHhhhhh
Confidence            44555555554  677778888888888888888887763321 111111100      11001111000000001000 


Q ss_pred             CCCeEEEEE------------cCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 004207          555 TSKVESCHF------------SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR  622 (768)
Q Consensus       555 ~~~I~sl~f------------Spdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIr  622 (768)
                      ...+....|            .-++..++.|+.-..+..+|+.+.+..+........|+-++.  ++++|++|...|+|.
T Consensus       123 r~gl~~~~~~~~s~~~M~~~~~~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~  200 (1118)
T KOG1275|consen  123 RQGLPVFDFTCPSMTKMASSLHMGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVF  200 (1118)
T ss_pred             ccCceeecccCCCHHHHHHHhccCCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEE
Confidence            000110111            114556777877788899999988877776555545666655  478999999999999


Q ss_pred             EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeC---------CCcEEEEECCCCeeEEEEecCCCeeEEEEecC
Q 004207          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPR  693 (768)
Q Consensus       623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~---------Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~  693 (768)
                      +-|.++.+. +.++.+|.+.|.+++..  |+ +|++|+.         |..|+|||+|.-+.+..+..+....-+.|+|.
T Consensus       201 LrD~~s~~~-iht~~aHs~siSDfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Ps  276 (1118)
T KOG1275|consen  201 LRDPNSFET-IHTFDAHSGSISDFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPS  276 (1118)
T ss_pred             eecCCcCce-eeeeeccccceeeeecc--CC-eEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhccc
Confidence            999998765 89999999999888776  33 6667763         56789999999887777766666677888886


Q ss_pred             CC-EEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          694 LG-RILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       694 ~~-~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      -. .+++++..|.+.+.|..+....            ......+......|.++++++++..++.|..+|.|.+|-
T Consensus       277 l~t~~~V~S~sGq~q~vd~~~lsNP------------~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  277 LTTRLAVTSQSGQFQFVDTATLSNP------------PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccceEEEEecccceeeccccccCCC------------ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            54 4777778888888774332110            011112223445599999999999999999999999993

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.68  E-value=1.1e-07  Score=107.06  Aligned_cols=158  Identities=15%  Similarity=0.189  Sum_probs=121.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------------EEEEeccCCCCEEEEEEcCCCCEEEEEeCC
Q 004207          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---------------VKSTLEEHTQWITDVRFSPSLSRLATSSAD  618 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~---------------~~~tl~~h~~~V~sl~fspdg~~LaTgs~D  618 (768)
                      ......|+.|+....|||+|+.||.++|..+.+..               .-.++.+|+..|..+.|+.+...|-|...+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            34568999999999999999999999999775421               124678999999999999998999999999


Q ss_pred             CcEEEEECCCCCeeEEE-eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCE
Q 004207          619 RTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR  696 (768)
Q Consensus       619 gtIrVWDl~t~~~~~~~-~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~  696 (768)
                      |.|.||-+-.+..+... -...++.|.+++|+.+|.. +|..-.||.|.+=.++. ..+.--.. ......+.|+++...
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdG-NRIwgKeLkg~~l~hv~ws~D~~~  170 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDG-NRIWGKELKGQLLAHVLWSEDLEQ  170 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeecc-ceecchhcchheccceeecccHHH
Confidence            99999999876643222 2334577999999999874 55677788888777663 32221111 123457889999888


Q ss_pred             EEEEEcCCeEEEEECCC
Q 004207          697 ILAAAIENYISILDVET  713 (768)
Q Consensus       697 llags~Dg~I~IwD~~t  713 (768)
                      ++++-..|.+.+||...
T Consensus       171 ~Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  171 ALFKKANGETHLYDNQG  187 (1189)
T ss_pred             HHhhhcCCcEEEecccc
Confidence            88888889999998754

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.68  E-value=1.1e-05  Score=83.78  Aligned_cols=205  Identities=17%  Similarity=0.214  Sum_probs=127.1

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCC--CeEEEEeccCC---CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 004207          561 CHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHT---QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (768)
Q Consensus       561 l~fSpdg~~LaSgs~Dg~I~VWdl~t--~~~~~tl~~h~---~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~  635 (768)
                      ++.+.||++||+. .|..|-|-..+.  ..++.....+.   -.=.-++|+||+.+||.+...|+|+|||+....  +..
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~--lf~   79 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE--LFV   79 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce--eEE
Confidence            5667789888876 466677765433  12223322222   234679999999999999999999999998533  222


Q ss_pred             ee-------cCCCCeEEEEEeCCC-----CeEEEEEeCCCcEEEEECCC-----CeeEEEEec----CCCeeEEEEecCC
Q 004207          636 FT-------GHSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINN-----GSCAGVFKC----QSGATQMRFQPRL  694 (768)
Q Consensus       636 ~~-------~h~~~V~slafsp~g-----~~lLaSgs~Dg~I~iWDl~s-----g~~i~~~~~----~~~i~sl~fsp~~  694 (768)
                      +.       .-...|..+.|.+..     ...|++-..+|.++-|-+..     ....++|..    ..+|.++.|+|..
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH  159 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence            21       123457777775532     22344555677887776532     233444443    5679999999998


Q ss_pred             CEEEEEEcCC-----------eEEEEECCCceEeee----c--------ceeEEeecCCCceEEe-ccCCCCeeEEEEeC
Q 004207          695 GRILAAAIEN-----------YISILDVETQVCRLK----L--------QTLELWNMTENKTLTL-SAHDKLVSSLAAST  750 (768)
Q Consensus       695 ~~llags~Dg-----------~I~IwD~~t~~~~~~----~--------~~I~iwd~~~~~~~~l-~~H~~~I~sla~sp  750 (768)
                      +.|++|+...           .+..|.+-....-..    .        .+..+|.+...+.... ......|..|..+|
T Consensus       160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP  239 (282)
T PF15492_consen  160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP  239 (282)
T ss_pred             CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence            8888776421           355565543321111    0        0112333222222211 22456799999999


Q ss_pred             CCCEEEEEECCCcEEEeC
Q 004207          751 VNGMVASASHDKCVKIWK  768 (768)
Q Consensus       751 dg~~LaSgs~DG~V~IWD  768 (768)
                      ||..||+...+|.|.||+
T Consensus       240 dg~~La~ih~sG~lsLW~  257 (282)
T PF15492_consen  240 DGSLLACIHFSGSLSLWE  257 (282)
T ss_pred             CCCEEEEEEcCCeEEEEe
Confidence            999999999999999996

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.67  E-value=5.6e-08  Score=109.78  Aligned_cols=197  Identities=20%  Similarity=0.358  Sum_probs=144.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCC--CEEEEEEcCCC--CEEEEEeCCCcEEEEECCCC
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQ--WITDVRFSPSL--SRLATSSADRTVRVWDTENP  629 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t-~~~~~tl~~h~~--~V~sl~fspdg--~~LaTgs~DgtIrVWDl~t~  629 (768)
                      .+.+.++.++|.|+-+|.++.-| +.+.|++. +....-+. |..  .|-.+.|+|..  .+-++....-.-.||++...
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s  101 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS  101 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence            34578899999999999998776 55556654 33333332 322  36778898853  34444444444568988543


Q ss_pred             --CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe-eEEEEec-CCCeeEEEEecCCCEEEEEEcCCe
Q 004207          630 --DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC-QSGATQMRFQPRLGRILAAAIENY  705 (768)
Q Consensus       630 --~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~-~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~  705 (768)
                        ...-..+.+|...|+.+.|+|....++++|+.|-.|..||+++.. .+..+.. +.....|.|+.....+++.+..+.
T Consensus       102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~  181 (1081)
T KOG0309|consen  102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND  181 (1081)
T ss_pred             CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence              233467788999999999999999999999999999999999743 4444443 667888999988888999999999


Q ss_pred             EEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC-CCEEEEEECCCcEEEeC
Q 004207          706 ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK  768 (768)
Q Consensus       706 I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd-g~~LaSgs~DG~V~IWD  768 (768)
                      |.+||.+.+...               ...+.+|...|+.++|... ...+.+++.||+|++||
T Consensus       182 i~vwd~r~gs~p---------------l~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~  230 (1081)
T KOG0309|consen  182 IFVWDLRKGSTP---------------LCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWD  230 (1081)
T ss_pred             eEEEeccCCCcc---------------eEEecccceeeehHHHhhhhhhhhcccCCCCceeeec
Confidence            999998875431               2244568888888888743 35788999999999997

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.62  E-value=2.6e-07  Score=95.61  Aligned_cols=209  Identities=21%  Similarity=0.334  Sum_probs=135.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----EEEEeccCC------------CCEEEEEEcCCC--CEEEEE
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHT------------QWITDVRFSPSL--SRLATS  615 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~-----~~~tl~~h~------------~~V~sl~fspdg--~~LaTg  615 (768)
                      .+.|+++.|...|.||++|...|+|.+|..+...     ....+.+|.            ..|..|.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4569999999999999999999999999765422     122334443            347889997653  357777


Q ss_pred             eCCCcEEEEECCCCCe-----------------------------------------eEEEe-ecCCCCeEEEEEeCCCC
Q 004207          616 SADRTVRVWDTENPDY-----------------------------------------SLRTF-TGHSTTVMSLDFHPSKE  653 (768)
Q Consensus       616 s~DgtIrVWDl~t~~~-----------------------------------------~~~~~-~~h~~~V~slafsp~g~  653 (768)
                      +.|++|++|.+.....                                         +.+.+ ..|.-.|.++.|+.+..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            8999999998863210                                         00112 45777789999999877


Q ss_pred             eEEEEEeCCCcEEEEECCCCe-e--EEEEec------CCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCceEeeeccee
Q 004207          654 DLLCSCDNNSEIRYWSINNGS-C--AGVFKC------QSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQTL  723 (768)
Q Consensus       654 ~lLaSgs~Dg~I~iWDl~sg~-~--i~~~~~------~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~~~~~~~I  723 (768)
                      .+| +++ |-.|.+|+++-.. +  +..++.      ..-|++..|+|... .+...++.|.|++-|++.........  
T Consensus       186 t~l-SaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~--  261 (460)
T COG5170         186 TLL-SAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK--  261 (460)
T ss_pred             eee-ecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch--
Confidence            555 544 7789999986421 1  111221      12378889999654 46667788999999998543211100  


Q ss_pred             EEeecC-CCc-eEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          724 ELWNMT-ENK-TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       724 ~iwd~~-~~~-~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .++... .+. .-.+..-...|..+.|+++|+||++-+. -+|+|||
T Consensus       262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD  307 (460)
T COG5170         262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD  307 (460)
T ss_pred             hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence            011100 000 0112233456889999999999987765 4899997

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.62  E-value=8.8e-06  Score=83.20  Aligned_cols=237  Identities=10%  Similarity=0.023  Sum_probs=148.5

Q ss_pred             ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeC
Q 004207          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGH  575 (768)
Q Consensus       497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~  575 (768)
                      +..-.+-....+||+|+..|...+|...... +             .    ......|...|+-+.=..|. --+..++.
T Consensus        75 F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~-~-------------h----~~~cd~snn~v~~~~r~cd~~~~~~i~sn  136 (344)
T KOG4532|consen   75 FTPGSFINKCVTLADGGASGQFDLFACNTND-G-------------H----LYQCDVSNNDVTLVKRYCDLKFPLNIASN  136 (344)
T ss_pred             ccchHhhccccEEEeccccceeeeecccCcc-c-------------c----eeeecccccchhhhhhhcccccceeeccC
Confidence            3344455677889999999999999443221 1             0    11112232222221111122 23667788


Q ss_pred             CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-eeEE-EeecCCCCeEEEEEeCCCC
Q 004207          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLR-TFTGHSTTVMSLDFHPSKE  653 (768)
Q Consensus       576 Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~-~~~~-~~~~h~~~V~slafsp~g~  653 (768)
                      |.++++.+++.+.....+....-.+.++++++|++++++.+....|..|.++... +.+. ........-.+..|+... 
T Consensus       137 dht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-  215 (344)
T KOG4532|consen  137 DHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-  215 (344)
T ss_pred             CcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-
Confidence            8888888877554443332222338899999999999999999999999987643 3334 233334556778888774 


Q ss_pred             eEEEEEeCCCcEEEEECCCCeeEEEEe------cCCCeeEEEEecCCCE--EEEEEcCCeEEEEECCCceEeeecceeEE
Q 004207          654 DLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLKLQTLEL  725 (768)
Q Consensus       654 ~lLaSgs~Dg~I~iWDl~sg~~i~~~~------~~~~i~sl~fsp~~~~--llags~Dg~I~IwD~~t~~~~~~~~~I~i  725 (768)
                      ..||++..||++.|||+|.........      +.+.+..+.|++.|..  |+..-.-+.+.+.|+++......   |.+
T Consensus       216 ~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~---I~i  292 (344)
T KOG4532|consen  216 LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV---IVI  292 (344)
T ss_pred             ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE---Eec
Confidence            588899999999999999754333222      3566889999986543  44555567899999998764332   222


Q ss_pred             eecCCCceEEeccCC-CCeeEEEEeCCCCEEEEEECC
Q 004207          726 WNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHD  761 (768)
Q Consensus       726 wd~~~~~~~~l~~H~-~~I~sla~spdg~~LaSgs~D  761 (768)
                      .+-.      ...|. ..|+.-.|+.++.-+.+.+++
T Consensus       293 ~~d~------~~~~~tq~ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  293 PDDV------ERKHNTQHIFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             Cccc------cccccccccccccccCCCcccccccch
Confidence            2211      12333 347778888777655555443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.61  E-value=1.4e-05  Score=89.04  Aligned_cols=192  Identities=10%  Similarity=0.063  Sum_probs=118.2

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEE-EEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCe-
Q 004207          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-  643 (768)
Q Consensus       566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~s-l~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V-  643 (768)
                      ++..+++++.|+.|+.+|..+++.+....... .+.+ ...  .+..++.++.++.|+.||.++++. +-.+......+ 
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~  179 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALT  179 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCcee
Confidence            56778888899999999999999987765332 2221 112  245777788899999999998875 32222211111 


Q ss_pred             ----EEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC-----------e-eEEEEecCCCEEEEEEcCCeEE
Q 004207          644 ----MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----------A-TQMRFQPRLGRILAAAIENYIS  707 (768)
Q Consensus       644 ----~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~-----------i-~sl~fsp~~~~llags~Dg~I~  707 (768)
                          .+.... + . .++.+..++.|..+|+++|+.+........           + ....+  .++.+++++.++.++
T Consensus       180 ~~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~  254 (377)
T TIGR03300       180 LRGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVA  254 (377)
T ss_pred             ecCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEE
Confidence                111222 2 3 455777789999999999987765432111           0 11112  246788888899999


Q ss_pred             EEECCCceEeeecc---------------------eeEEeecCCCceEEec-cC-CCCeeEEEEeCCCCEEEEEECCCcE
Q 004207          708 ILDVETQVCRLKLQ---------------------TLELWNMTENKTLTLS-AH-DKLVSSLAASTVNGMVASASHDKCV  764 (768)
Q Consensus       708 IwD~~t~~~~~~~~---------------------~I~iwd~~~~~~~~l~-~H-~~~I~sla~spdg~~LaSgs~DG~V  764 (768)
                      .||..+++......                     .+..+|..+++.+--. .. ...+.+...  .+..|++++.||.|
T Consensus       255 a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l  332 (377)
T TIGR03300       255 ALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYL  332 (377)
T ss_pred             EEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEE
Confidence            99998775443221                     4555565555543111 11 111222222  36688899999999


Q ss_pred             EEeC
Q 004207          765 KIWK  768 (768)
Q Consensus       765 ~IWD  768 (768)
                      ++||
T Consensus       333 ~~~d  336 (377)
T TIGR03300       333 HWLS  336 (377)
T ss_pred             EEEE
Confidence            9875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=2.1e-07  Score=102.05  Aligned_cols=163  Identities=17%  Similarity=0.179  Sum_probs=113.8

Q ss_pred             cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (768)
Q Consensus       503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VW  582 (768)
                      -+.++...++|.|.+|++|......|+..            +-.+..++..|+.+|.++-|-.+-++++++  ||.|.+|
T Consensus       744 idNENSFiSASkDKTVKLWSik~EgD~~~------------tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlW  809 (1034)
T KOG4190|consen  744 IDNENSFISASKDKTVKLWSIKPEGDEIG------------TSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLW  809 (1034)
T ss_pred             cccccceeeccCCceEEEEEeccccCccc------------cceeeeEhhhccCcccceeeeeccceeeec--cCcceee
Confidence            45566677899999999997665544321            122455678999999999999998888876  7899999


Q ss_pred             ECCCCeEEEEecc--CCCCEEEEEEcC--CCCEE-EEEeCCCcEEEEECCCCCeeE--EEe--ecCCCCeEEEEEeCCCC
Q 004207          583 CTESFTVKSTLEE--HTQWITDVRFSP--SLSRL-ATSSADRTVRVWDTENPDYSL--RTF--TGHSTTVMSLDFHPSKE  653 (768)
Q Consensus       583 dl~t~~~~~tl~~--h~~~V~sl~fsp--dg~~L-aTgs~DgtIrVWDl~t~~~~~--~~~--~~h~~~V~slafsp~g~  653 (768)
                      |.--++++..+..  ..+.+..|.--+  +..++ +.|+...+|+++|.+..+...  +..  .+....+.+++..+.|+
T Consensus       810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN  889 (1034)
T KOG4190|consen  810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGN  889 (1034)
T ss_pred             cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcc
Confidence            9877776653311  112233333333  33334 444778899999999876522  222  23446689999999887


Q ss_pred             eEEEEEeCCCcEEEEECCCCeeEEEEe
Q 004207          654 DLLCSCDNNSEIRYWSINNGSCAGVFK  680 (768)
Q Consensus       654 ~lLaSgs~Dg~I~iWDl~sg~~i~~~~  680 (768)
                      ++ +++-.+|+|.+.|.++|+.+..+.
T Consensus       890 ~l-Aa~LSnGci~~LDaR~G~vINswr  915 (1034)
T KOG4190|consen  890 KL-AAALSNGCIAILDARNGKVINSWR  915 (1034)
T ss_pred             hh-hHHhcCCcEEEEecCCCceeccCC
Confidence            54 466678999999999999887654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.58  E-value=2.5e-06  Score=97.44  Aligned_cols=208  Identities=14%  Similarity=0.196  Sum_probs=146.1

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCC------------CEEEEEeCCCcEEEE
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL------------SRLATSSADRTVRVW  624 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg------------~~LaTgs~DgtIrVW  624 (768)
                      .-.++.|+|.| +||-|+. ..|.|-|..+.+.+.+++.|...|+.|+|.|-.            -+||++...|.|.+|
T Consensus        17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~   94 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV   94 (1062)
T ss_pred             cccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence            35678899766 6777765 478999999999999999999999999997731            257778888999999


Q ss_pred             ECCCCCeeEEEeecCCCCeEEEEEeCC---CCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCC-EEEE
Q 004207          625 DTENPDYSLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-RILA  699 (768)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~slafsp~---g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~-~lla  699 (768)
                      |...... +..+..|..+|..++|-+.   .+++|++-.....|.+|+..+|+....... +....|+.+.|-.. .+..
T Consensus        95 d~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~  173 (1062)
T KOG1912|consen   95 DFVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV  173 (1062)
T ss_pred             Eehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence            9987654 5667778899999999763   335666666678999999999998877665 34455678877543 3444


Q ss_pred             EEcCCeEEEEECCCce----Eeeecc-----------------------------------------------------e
Q 004207          700 AAIENYISILDVETQV----CRLKLQ-----------------------------------------------------T  722 (768)
Q Consensus       700 gs~Dg~I~IwD~~t~~----~~~~~~-----------------------------------------------------~  722 (768)
                      .+..|.|.+-+.-...    ....+.                                                     .
T Consensus       174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre  253 (1062)
T KOG1912|consen  174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE  253 (1062)
T ss_pred             EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence            4555655554431110    000000                                                     5


Q ss_pred             eEEeecCCCceEE-eccCCCCeeEEEEeCCC--CEEEEEECCCcEEEe
Q 004207          723 LELWNMTENKTLT-LSAHDKLVSSLAASTVN--GMVASASHDKCVKIW  767 (768)
Q Consensus       723 I~iwd~~~~~~~~-l~~H~~~I~sla~spdg--~~LaSgs~DG~V~IW  767 (768)
                      +.++|++-..++. +.-..+.+.-+.|-|+.  ..|++.-.||.+.||
T Consensus       254 llv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltir  301 (1062)
T KOG1912|consen  254 LLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIR  301 (1062)
T ss_pred             eEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEE
Confidence            5566666555442 33344556667777776  589999999999998

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.57  E-value=9.6e-08  Score=109.59  Aligned_cols=167  Identities=19%  Similarity=0.193  Sum_probs=119.8

Q ss_pred             eeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC----
Q 004207          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR----  619 (768)
Q Consensus       544 ~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg----  619 (768)
                      .|+.++.|+.|+...+|++|+-+.++|++|+..|.|++|++.+|.......+|..+|+.|.-+.+|..+++.+.-.    
T Consensus      1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence            4667788899999999999999999999999999999999999999989999999999888888887766654321    


Q ss_pred             -------------------------------------cEEEEECCCCCeeEEEeec---CCCCeEEEEEeCCCCeEEEEE
Q 004207          620 -------------------------------------TVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSC  659 (768)
Q Consensus       620 -------------------------------------tIrVWDl~t~~~~~~~~~~---h~~~V~slafsp~g~~lLaSg  659 (768)
                                                           .+.|||+.++..+...+.+   ..-.-.+..|+|+...+|   
T Consensus      1170 aLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--- 1246 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--- 1246 (1516)
T ss_pred             HHhccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---
Confidence                                                 2344554444332221221   111225677888866444   


Q ss_pred             eCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc
Q 004207          660 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (768)
Q Consensus       660 s~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~  721 (768)
                       .||  .+||++..+.++.|..-.....-.|+|.|..++.-+     .|||+++.+..+...
T Consensus      1247 -ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVP 1300 (1516)
T ss_pred             -eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcCc
Confidence             255  369999888888776433333446899998888765     479998876555443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.56  E-value=2.8e-05  Score=86.75  Aligned_cols=192  Identities=9%  Similarity=-0.003  Sum_probs=118.1

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEE-----EEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCC
Q 004207          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-----DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST  641 (768)
Q Consensus       567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~-----sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~  641 (768)
                      +..++.++.++.|+.||.++++.+..+......+.     +....  +..++.+..++.|..+|+++++..-..-.....
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~  222 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK  222 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence            45677778899999999999999887754332211     11111  346788888999999999888642211111000


Q ss_pred             ---C------e-EEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 004207          642 ---T------V-MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV  711 (768)
Q Consensus       642 ---~------V-~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~  711 (768)
                         .      + .+..+.  +. .+++++.+|.++.||..+++.+....... .....  ..++.+++++.++.|..+|.
T Consensus       223 g~~~~~~~~~~~~~p~~~--~~-~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~--~~~~~vyv~~~~G~l~~~d~  296 (377)
T TIGR03300       223 GRTELERLVDVDGDPVVD--GG-QVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGPA--VDDNRLYVTDADGVVVALDR  296 (377)
T ss_pred             CCCchhhhhccCCccEEE--CC-EEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCce--EeCCEEEEECCCCeEEEEEC
Confidence               0      0 111122  23 44466678999999999998877665322 22222  23567888888999999998


Q ss_pred             CCceEeeecc------------------------eeEEeecCCCceE-EeccCCCCe-eEEEEeCCCCEEEEEECCCcEE
Q 004207          712 ETQVCRLKLQ------------------------TLELWNMTENKTL-TLSAHDKLV-SSLAASTVNGMVASASHDKCVK  765 (768)
Q Consensus       712 ~t~~~~~~~~------------------------~I~iwd~~~~~~~-~l~~H~~~I-~sla~spdg~~LaSgs~DG~V~  765 (768)
                      .+++......                        .+.++|..+++.+ .+..+...+ .+..+.  ++.|+.++.||.|+
T Consensus       297 ~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~--~~~l~v~~~dG~l~  374 (377)
T TIGR03300       297 RSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV--GDGLLVQTRDGDLY  374 (377)
T ss_pred             CCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE--CCEEEEEeCCceEE
Confidence            8775443221                        5566676666665 233333322 222333  34688999999998


Q ss_pred             EeC
Q 004207          766 IWK  768 (768)
Q Consensus       766 IWD  768 (768)
                      .|.
T Consensus       375 ~~~  377 (377)
T TIGR03300       375 AFR  377 (377)
T ss_pred             EeC
Confidence            763

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.55  E-value=3.5e-05  Score=84.57  Aligned_cols=162  Identities=12%  Similarity=0.063  Sum_probs=111.1

Q ss_pred             eEEEEEcCCCCEEEEEe-C-CCcEEEEECCCCeEEEEeccCCC-------------------------------CEEEE-
Q 004207          558 VESCHFSPDGKLLATGG-H-DKKAVLWCTESFTVKSTLEEHTQ-------------------------------WITDV-  603 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs-~-Dg~I~VWdl~t~~~~~tl~~h~~-------------------------------~V~sl-  603 (768)
                      -..++++|||++|++.. . +..|.|.|+.+++.+..+....+                               .+... 
T Consensus       107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~  186 (352)
T TIGR02658       107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTE  186 (352)
T ss_pred             cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeee
Confidence            34678899999888775 3 67899999888776654321000                               01111 


Q ss_pred             -------------EEcC-CCCEEEEEeCCCcEEEEECCCCCe----eEEEeec-------CCCCeEEEEEeCCCCeEEEE
Q 004207          604 -------------RFSP-SLSRLATSSADRTVRVWDTENPDY----SLRTFTG-------HSTTVMSLDFHPSKEDLLCS  658 (768)
Q Consensus       604 -------------~fsp-dg~~LaTgs~DgtIrVWDl~t~~~----~~~~~~~-------h~~~V~slafsp~g~~lLaS  658 (768)
                                   .|.+ +++++++... |+|.+.|+.....    ....+..       ..+.+.-++++++++++++.
T Consensus       187 vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~  265 (352)
T TIGR02658       187 VFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLL  265 (352)
T ss_pred             eecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEE
Confidence                         1223 6666666655 9999999654321    1111111       23344459999999988874


Q ss_pred             Ee---------CCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCC-EEEEEE-cCCeEEEEECCCceEeeec
Q 004207          659 CD---------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-RILAAA-IENYISILDVETQVCRLKL  720 (768)
Q Consensus       659 gs---------~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~-~llags-~Dg~I~IwD~~t~~~~~~~  720 (768)
                      ..         ..+.|.++|..+++.+..+.....+..++++|++. .|++.. .++.|.++|..+.+.+..+
T Consensus       266 ~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       266 ADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             ecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            42         22589999999999999999889999999999999 777666 5788999999988765543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=7.6e-06  Score=91.00  Aligned_cols=150  Identities=20%  Similarity=0.271  Sum_probs=107.6

Q ss_pred             EEEEcCCCC-EEE--EEeCC---------CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEE
Q 004207          560 SCHFSPDGK-LLA--TGGHD---------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--ADRTVRVWD  625 (768)
Q Consensus       560 sl~fSpdg~-~La--Sgs~D---------g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs--~DgtIrVWD  625 (768)
                      .+.|++-|. +|+  +..-|         .++++++++..++...+. ..++|.++.|+|+++-|+++-  .=-.+.|||
T Consensus       222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifn  300 (566)
T KOG2315|consen  222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFN  300 (566)
T ss_pred             EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEc
Confidence            467777555 232  22223         368888888555554443 478999999999998776653  245799999


Q ss_pred             CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeC--CCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc-
Q 004207          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-  702 (768)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~--Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~-  702 (768)
                      ++. . .+..+  ..++-.++-|+|.|+.++++|-.  -|.|-|||+.+.+++..+.. ...+-+.|+|+|.+|++++. 
T Consensus       301 lr~-~-~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-~~tt~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  301 LRG-K-PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-ANTTVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             CCC-C-EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc-CCceEEEEcCCCcEEEEEecc
Confidence            874 2 23333  35677889999999866665533  48899999999888888775 34456899999999999875 


Q ss_pred             -----CCeEEEEECCCce
Q 004207          703 -----ENYISILDVETQV  715 (768)
Q Consensus       703 -----Dg~I~IwD~~t~~  715 (768)
                           |+.|+||+.....
T Consensus       376 PRlrvdNg~KiwhytG~~  393 (566)
T KOG2315|consen  376 PRLRVDNGIKIWHYTGSL  393 (566)
T ss_pred             ccEEecCCeEEEEecCce
Confidence                 6888899876543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.53  E-value=1.7e-07  Score=102.15  Aligned_cols=168  Identities=19%  Similarity=0.293  Sum_probs=130.8

Q ss_pred             eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCC-CCeEEEEEeCCCcEE
Q 004207          588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIR  666 (768)
Q Consensus       588 ~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~-g~~lLaSgs~Dg~I~  666 (768)
                      .+...+..|.+.|..|.|+..|..|++|+.|..|.+||+......+....+|...|.--.|.|. +..-+++++.||.|+
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            4455778899999999999999999999999999999999888878888899998888888875 344577999999999


Q ss_pred             EEECCC-CeeE---EEEecCCCeeEEEEecCCCE-EEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCC
Q 004207          667 YWSINN-GSCA---GVFKCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK  741 (768)
Q Consensus       667 iWDl~s-g~~i---~~~~~~~~i~sl~fsp~~~~-llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~  741 (768)
                      +=.+.. +.+.   +.-.+.+.|..++..|...+ |++++.|+.+.-+|++.......+.             .-..+..
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-------------cr~~~~~  279 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-------------CREADEK  279 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-------------eeccCCc
Confidence            977643 3332   23345788999999887765 8889999999999988765432221             1112222


Q ss_pred             ---CeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 004207          742 ---LVSSLAASTVNG-MVASASHDKCVKIWK  768 (768)
Q Consensus       742 ---~I~sla~spdg~-~LaSgs~DG~V~IWD  768 (768)
                         ...+++.+|... .|++++.|-.++|||
T Consensus       280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD  310 (559)
T KOG1334|consen  280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYD  310 (559)
T ss_pred             cceeeeeEecCCCCccccccCChhhhhhhhc
Confidence               456788888764 899999999999986

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.53  E-value=1.6e-05  Score=97.90  Aligned_cols=211  Identities=16%  Similarity=0.191  Sum_probs=137.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC---C---CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC---CCcEEEE
Q 004207          554 STSKVESCHFSPDGKLLATGGH---D---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVW  624 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~---D---g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~---DgtIrVW  624 (768)
                      +.+.-..|+|-.||.|||+.+.   +   ..|+||+.+ |.+..+-+.-.+--.+++|.|.|++||+...   ...|.+|
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF  286 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence            5556778999999999998764   2   479999976 6666555544444567899999999999865   3456777


Q ss_pred             ECCC---CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeE--EEEec--CCCeeEEEEecCCCE-
Q 004207          625 DTEN---PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFKC--QSGATQMRFQPRLGR-  696 (768)
Q Consensus       625 Dl~t---~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i--~~~~~--~~~i~sl~fsp~~~~-  696 (768)
                      .-+.   ++..+.. ......|..|.|++++. +|+..-.| .|.+|-..+..-.  ..+..  ...+..+.|+|.... 
T Consensus       287 ErNGLrhgeF~l~~-~~~~~~v~~l~Wn~ds~-iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~  363 (928)
T PF04762_consen  287 ERNGLRHGEFTLRF-DPEEEKVIELAWNSDSE-ILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLR  363 (928)
T ss_pred             ecCCcEeeeEecCC-CCCCceeeEEEECCCCC-EEEEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCE
Confidence            6443   2221111 23456799999999977 55555544 4999999876532  23332  344566999997655 


Q ss_pred             EEEEEcCCeEEEEECCCceEee------ecceeEEeecCCCceE-------------EeccCCCCeeEEEEeCCCCEEEE
Q 004207          697 ILAAAIENYISILDVETQVCRL------KLQTLELWNMTENKTL-------------TLSAHDKLVSSLAASTVNGMVAS  757 (768)
Q Consensus       697 llags~Dg~I~IwD~~t~~~~~------~~~~I~iwd~~~~~~~-------------~l~~H~~~I~sla~spdg~~LaS  757 (768)
                      |.+.+.++.+.++++.-.....      ....+.+-|-..-.+.             ....-...|.+++|++++..+++
T Consensus       364 L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~av  443 (928)
T PF04762_consen  364 LHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAV  443 (928)
T ss_pred             EEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEE
Confidence            6666666777666553322211      1112233232221111             11123568999999999988999


Q ss_pred             EECCCcEEEeC
Q 004207          758 ASHDKCVKIWK  768 (768)
Q Consensus       758 gs~DG~V~IWD  768 (768)
                      -..||.|.+|+
T Consensus       444 l~~d~~l~~~~  454 (928)
T PF04762_consen  444 LTSDGSLSIYE  454 (928)
T ss_pred             EECCCCEEEEE
Confidence            99999999874

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.51  E-value=0.00023  Score=74.47  Aligned_cols=180  Identities=14%  Similarity=0.104  Sum_probs=116.1

Q ss_pred             eEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeEEEEecc-----CCCCEEEEEEcCCCCEEEEEeCC--------CcEEE
Q 004207          558 VESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD--------RTVRV  623 (768)
Q Consensus       558 I~sl~fS-pdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~-----h~~~V~sl~fspdg~~LaTgs~D--------gtIrV  623 (768)
                      ...+++. +++. |+++..+ .+.++|..+++.......     .....+++++.++|++.++....        |.|..
T Consensus        42 ~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDGR-LYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTSE-EEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCCE-EEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            6677777 5654 5555554 466669988866544432     34568899999999988877654        45777


Q ss_pred             EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe--e--EEEE-ec--C-CCeeEEEEecCCC
Q 004207          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--C--AGVF-KC--Q-SGATQMRFQPRLG  695 (768)
Q Consensus       624 WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~--~--i~~~-~~--~-~~i~sl~fsp~~~  695 (768)
                      ++.. ++  +......-.....|+|+|+++.++++-+..+.|..|++....  .  ...+ ..  . +..-.+++..+|+
T Consensus       120 ~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~  196 (246)
T PF08450_consen  120 IDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN  196 (246)
T ss_dssp             EETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-
T ss_pred             ECCC-Ce--EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC
Confidence            7776 33  233333345678999999999888888888999999986322  1  1222 22  2 2367899999988


Q ss_pred             EEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEe-CCCCEEEEEE
Q 004207          696 RILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAS-TVNGMVASAS  759 (768)
Q Consensus       696 ~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~s-pdg~~LaSgs  759 (768)
                      .+++....+.|.+||.+ ++....+              .+.  ...+++++|. ++.+.|+..+
T Consensus       197 l~va~~~~~~I~~~~p~-G~~~~~i--------------~~p--~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  197 LWVADWGGGRIVVFDPD-GKLLREI--------------ELP--VPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEEETTTEEEEEETT-SCEEEEE--------------E-S--SSSEEEEEEESTTSSEEEEEE
T ss_pred             EEEEEcCCCEEEEECCC-ccEEEEE--------------cCC--CCCEEEEEEECCCCCEEEEEe
Confidence            77777788999999987 4432211              111  2368999995 5656555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.49  E-value=2.3e-05  Score=85.47  Aligned_cols=174  Identities=15%  Similarity=0.156  Sum_probs=125.4

Q ss_pred             EcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCCeeEEEeecCC
Q 004207          563 FSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-TVRVWDTENPDYSLRTFTGHS  640 (768)
Q Consensus       563 fSp-dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg-tIrVWDl~t~~~~~~~~~~h~  640 (768)
                      |++ +|.+++..+. |.+.|.+...+-.+.  .+|...|.-..+.-+++-++.|..|| .|-|||.++++  +..+...-
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~l  401 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDL  401 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeCCc
Confidence            444 7888888875 678887765544443  25677799889988888899999999 99999999876  45566667


Q ss_pred             CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCe----EEEEECCCce
Q 004207          641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY----ISILDVETQV  715 (768)
Q Consensus       641 ~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~----I~IwD~~t~~  715 (768)
                      +.|.++..+++|+.++ ++.....|.++|+.++.....-+. .+-|+.+.|+|++++++-+--+|.    |++||+.+  
T Consensus       402 g~I~av~vs~dGK~~v-vaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~--  478 (668)
T COG4946         402 GNIEAVKVSPDGKKVV-VANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG--  478 (668)
T ss_pred             cceEEEEEcCCCcEEE-EEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC--
Confidence            8899999999988555 666678899999999886554443 566999999999998887766653    55555554  


Q ss_pred             EeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE
Q 004207          716 CRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS  759 (768)
Q Consensus       716 ~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs  759 (768)
                                     +++.......+.=.+-+|.|++++|.--+
T Consensus       479 ---------------~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         479 ---------------GKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ---------------CeEEEecCCcccccCcccCCCCcEEEEEe
Confidence                           34333322223334567778887665443

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=98.47  E-value=1.5e-07  Score=63.33  Aligned_cols=27  Identities=41%  Similarity=0.685  Sum_probs=24.4

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHhc
Q 004207           10 KMLDVYIYDYLLKRKLHASAKAFQTEG   36 (768)
Q Consensus        10 ~~L~~yiydyl~k~~~~~~A~~~~~e~   36 (768)
                      +.||.+|||||+++|+.+||++|.+|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            479999999999999999999999985

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.47  E-value=1.1e-05  Score=91.23  Aligned_cols=247  Identities=11%  Similarity=0.162  Sum_probs=150.8

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      ...||++|+.||.+++.......+.....+    ......+.--.++.+|.+.|.-+.|+.....|-+...+|.|.||-+
T Consensus        25 e~gyIAcgG~dGlLKVlKl~t~t~d~~~~g----laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWml  100 (1189)
T KOG2041|consen   25 ESGYIACGGADGLLKVLKLGTDTTDLNKSG----LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWML  100 (1189)
T ss_pred             cCCeEEeccccceeEEEEccccCCcccccc----cccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEee
Confidence            567999999999999985543322211111    0112233445678899999999999998889999999999999987


Q ss_pred             CCCeEEEEe--ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------------------------------CCe
Q 004207          585 ESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-------------------------------PDY  631 (768)
Q Consensus       585 ~t~~~~~tl--~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t-------------------------------~~~  631 (768)
                      -.+.-...+  ....+.|.+++|+.||..++..-.||.|.|=.++.                               ++.
T Consensus       101 ykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~  180 (1189)
T KOG2041|consen  101 YKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGET  180 (1189)
T ss_pred             ecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcE
Confidence            655322111  22456688899999988887777777664432221                               110


Q ss_pred             eE--------------------EEeecCCCCeEEEEEe--------CCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC
Q 004207          632 SL--------------------RTFTGHSTTVMSLDFH--------PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS  683 (768)
Q Consensus       632 ~~--------------------~~~~~h~~~V~slafs--------p~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~  683 (768)
                      .+                    ..+......|..+.|.        |+ .-.|++|-.+|.+.|..-.+......+..+-
T Consensus       181 hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pd-rP~lavcy~nGr~QiMR~eND~~Pvv~dtgm  259 (1189)
T KOG2041|consen  181 HLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPD-RPRLAVCYANGRMQIMRSENDPEPVVVDTGM  259 (1189)
T ss_pred             EEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCC-CCEEEEEEcCceehhhhhcCCCCCeEEeccc
Confidence            00                    0011122335666664        23 3467788888888877655555445555556


Q ss_pred             CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 004207          684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC  763 (768)
Q Consensus       684 ~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~  763 (768)
                      .+....|+++|..+++++.+..-.- +..+       ..|.+|..-....-++......|++++|-..|-.++.+ .|+.
T Consensus       260 ~~vgakWnh~G~vLAvcG~~~da~~-~~d~-------n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsf  330 (1189)
T KOG2041|consen  260 KIVGAKWNHNGAVLAVCGNDSDADE-PTDS-------NKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSF  330 (1189)
T ss_pred             EeecceecCCCcEEEEccCcccccC-cccc-------ceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-ecce
Confidence            7888999999999988886532100 0000       02334433333333555566678888887655444433 3455


Q ss_pred             EE
Q 004207          764 VK  765 (768)
Q Consensus       764 V~  765 (768)
                      |+
T Consensus       331 iy  332 (1189)
T KOG2041|consen  331 IY  332 (1189)
T ss_pred             EE
Confidence            44

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.44  E-value=0.00011  Score=76.98  Aligned_cols=193  Identities=12%  Similarity=0.139  Sum_probs=121.4

Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCCeeEE-E
Q 004207          559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYSLR-T  635 (768)
Q Consensus       559 ~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fs-pdg~~LaTgs~DgtIrVWDl~t~~~~~~-~  635 (768)
                      .+++|.+ ++.++++-...+.|+.|+..+++... +....  ...+++. +++ .|+.+..++ +.++|+.+++.... .
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEee
Confidence            3678988 67777777778999999998876653 32222  6777777 564 555555544 56669888754222 2


Q ss_pred             ee--c-CCCCeEEEEEeCCCCeEEEEEeCC--------CcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEE-EcC
Q 004207          636 FT--G-HSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA-AIE  703 (768)
Q Consensus       636 ~~--~-h~~~V~slafsp~g~~lLaSgs~D--------g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llag-s~D  703 (768)
                      ..  . .......+++.++|+ ++++....        |.|..++.. ++.......-.....++|+|+++.|+++ +..
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~  155 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN  155 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred             ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence            21  1 345688999999988 55554432        567888887 6666656556678899999999887755 467


Q ss_pred             CeEEEEECCCceE-eeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          704 NYISILDVETQVC-RLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       704 g~I~IwD~~t~~~-~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +.|..|++..... .....  .++++.        ...+..-.+++..+|+++++.-..+.|.++|
T Consensus       156 ~~i~~~~~~~~~~~~~~~~--~~~~~~--------~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~  211 (246)
T PF08450_consen  156 GRIWRFDLDADGGELSNRR--VFIDFP--------GGPGYPDGLAVDSDGNLWVADWGGGRIVVFD  211 (246)
T ss_dssp             TEEEEEEEETTTCCEEEEE--EEEE-S--------SSSCEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred             ceeEEEeccccccceeeee--eEEEcC--------CCCcCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence            8888888864322 11100  111221        1123466788888887777666677777664

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.44  E-value=2.1e-06  Score=92.10  Aligned_cols=159  Identities=10%  Similarity=0.130  Sum_probs=111.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEeccCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCC
Q 004207          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPD  630 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~----~~~tl~~h~~~V~sl~fspdg~~LaTgs~D---gtIrVWDl~t~~  630 (768)
                      +..+..++++++||++..++...++++....    +...... ...-+++.|..+......+..-   ..+.+|....  
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--  141 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--  141 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence            4456678889999999888887777655432    2323322 2233455555554554444443   4455555554  


Q ss_pred             eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISI  708 (768)
Q Consensus       631 ~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~--~~~~i~sl~fsp~~~~llags~Dg~I~I  708 (768)
                      .+.....||-+.++.|+|+||+. ++++++.|..|++-....-..+..|.  +...|..++.-++ ..|++++.|++|++
T Consensus       142 ~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  142 GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL  219 (390)
T ss_pred             cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence            33567788999999999999986 66699999999998776655555554  3456888888886 45899999999999


Q ss_pred             EECCCceEeeecc
Q 004207          709 LDVETQVCRLKLQ  721 (768)
Q Consensus       709 wD~~t~~~~~~~~  721 (768)
                      ||+.++++.+.+.
T Consensus       220 Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  220 WDITSGKLLDTCD  232 (390)
T ss_pred             EecccCCcccccc
Confidence            9999998876654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=1.5e-05  Score=88.40  Aligned_cols=241  Identities=14%  Similarity=0.175  Sum_probs=139.9

Q ss_pred             CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK  578 (768)
Q Consensus       499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~  578 (768)
                      -+.+.+.+.||++-|....+.-|.     +....-..+|+..+|...+.+.+++.....-.-+.||.|++|+|.-..| .
T Consensus       254 ~idfSP~EkYLVT~s~~p~~~~~~-----d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-s  327 (698)
T KOG2314|consen  254 FIDFSPNEKYLVTYSPEPIIVEED-----DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-S  327 (698)
T ss_pred             eeecCCccceEEEecCCccccCcc-----cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-e
Confidence            344567778888776544433331     2222344556666666666666655544444557899999999977664 6


Q ss_pred             EEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC-------------------C--------------------
Q 004207          579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-------------------R--------------------  619 (768)
Q Consensus       579 I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D-------------------g--------------------  619 (768)
                      |.||+..+..++-.-...-..|....|+|.+.+||.=...                   .                    
T Consensus       328 isIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy  407 (698)
T KOG2314|consen  328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY  407 (698)
T ss_pred             EEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence            9999877644432211123446666666666555442110                   0                    


Q ss_pred             ------------------cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeC--CCcEEEEECCC-C---ee
Q 004207          620 ------------------TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINN-G---SC  675 (768)
Q Consensus       620 ------------------tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~--Dg~I~iWDl~s-g---~~  675 (768)
                                        .+-|+.++....++... .-...|...+|.|.|+.+.+..+.  ..+|.+|.+++ .   +.
T Consensus       408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l  486 (698)
T KOG2314|consen  408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL  486 (698)
T ss_pred             EEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence                              11122222111111111 134568888999998866554443  35788898873 2   22


Q ss_pred             EEEEecCCCeeEEEEecCCCEEEEEEc---CCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC
Q 004207          676 AGVFKCQSGATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN  752 (768)
Q Consensus       676 i~~~~~~~~i~sl~fsp~~~~llags~---Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg  752 (768)
                      +..+.. ...+.+.|+|.|+++++++.   .|.+.+||.....+               +......| ...+.+.|.|.|
T Consensus       487 Vk~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~---------------k~~~~~eh-~~at~veWDPtG  549 (698)
T KOG2314|consen  487 VKELDK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL---------------KDTASPEH-FAATEVEWDPTG  549 (698)
T ss_pred             hhhhcc-cccceEEEcCCCcEEEEEEecccccceEEEecchhhh---------------hhccCccc-cccccceECCCC
Confidence            333332 45678999999999887753   56777777754111               11112233 235788999999


Q ss_pred             CEEEEEECCCc
Q 004207          753 GMVASASHDKC  763 (768)
Q Consensus       753 ~~LaSgs~DG~  763 (768)
                      +|+++++.-+.
T Consensus       550 RYvvT~ss~wr  560 (698)
T KOG2314|consen  550 RYVVTSSSSWR  560 (698)
T ss_pred             CEEEEeeehhh
Confidence            99999986443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=1.3e-05  Score=92.56  Aligned_cols=174  Identities=11%  Similarity=0.125  Sum_probs=122.0

Q ss_pred             CCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (768)
Q Consensus       504 ~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWd  583 (768)
                      -++.+++-|..+|.|+++......                     +....|+..      ..+|.+++||+.||+|.|-.
T Consensus        47 v~~~~~~~GtH~g~v~~~~~~~~~---------------------~~~~~~s~~------~~~Gey~asCS~DGkv~I~s   99 (846)
T KOG2066|consen   47 VHDKFFALGTHRGAVYLTTCQGNP---------------------KTNFDHSSS------ILEGEYVASCSDDGKVVIGS   99 (846)
T ss_pred             hhcceeeeccccceEEEEecCCcc---------------------ccccccccc------ccCCceEEEecCCCcEEEee
Confidence            367899999999999988443221                     111233332      45899999999999999999


Q ss_pred             CCCCeEEEEeccCCCCEEEEEEcCC-----CCEEEEEeCCCcEEEEECCCCCe-eEEEeecCCCCeEEEEEeCCCCeEEE
Q 004207          584 TESFTVKSTLEEHTQWITDVRFSPS-----LSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLC  657 (768)
Q Consensus       584 l~t~~~~~tl~~h~~~V~sl~fspd-----g~~LaTgs~DgtIrVWDl~t~~~-~~~~~~~h~~~V~slafsp~g~~lLa  657 (768)
                      +.+.+...++. ...++.+|+++|+     .+.+++|+.-| +.++.-+--.. .-..+....++|.++.|..   .+++
T Consensus       100 l~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g---~lIA  174 (846)
T KOG2066|consen  100 LFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG---NLIA  174 (846)
T ss_pred             ccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC---cEEE
Confidence            88877776664 3468999999997     56899999888 77775432111 1124555678999999983   3676


Q ss_pred             EEeCCCcEEEEECCCCeeEEEEecCC-------CeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004207          658 SCDNNSEIRYWSINNGSCAGVFKCQS-------GATQMRFQPRLGRILAAAIENYISILDVE  712 (768)
Q Consensus       658 Sgs~Dg~I~iWDl~sg~~i~~~~~~~-------~i~sl~fsp~~~~llags~Dg~I~IwD~~  712 (768)
                      -++ |--|+|||+.++..+..+....       ....+.|.++. . ++.+...+|+|..++
T Consensus       175 Wan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~-LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  175 WAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-R-LVIGWGDSVKICSIK  233 (846)
T ss_pred             Eec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-e-EEEecCCeEEEEEEe
Confidence            665 4459999999888877766422       23567888763 3 344555678888776

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.39  E-value=3.4e-05  Score=85.08  Aligned_cols=204  Identities=15%  Similarity=0.171  Sum_probs=131.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCC---------------cEEEEECCCCeEEEEeccCCCC--EE-EEEEcCCCCEEEEEeC
Q 004207          556 SKVESCHFSPDGKLLATGGHDK---------------KAVLWCTESFTVKSTLEEHTQW--IT-DVRFSPSLSRLATSSA  617 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg---------------~I~VWdl~t~~~~~tl~~h~~~--V~-sl~fspdg~~LaTgs~  617 (768)
                      ..|..+.|+|.++||.+-+...               .+.|||+.++.++..+..-..+  .+ -+.|+-+..++|-. .
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v  150 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V  150 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence            3489999999999999876544               4999999999999998776655  55 67888888777665 4


Q ss_pred             CCcEEEEECCCCCeeEEEeecC-CCCeEEEEEeCCCCe-EEEE-----EeCCCcEEEEECCCCeeEEEEec-CCCeeEEE
Q 004207          618 DRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKED-LLCS-----CDNNSEIRYWSINNGSCAGVFKC-QSGATQMR  689 (768)
Q Consensus       618 DgtIrVWDl~t~~~~~~~~~~h-~~~V~slafsp~g~~-lLaS-----gs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~  689 (768)
                      ...++|+++ ++......+..- ...|....|+|.+++ .||.     .+..+.+++|.+..++.+.+... ...-..+.
T Consensus       151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk  229 (561)
T COG5354         151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK  229 (561)
T ss_pred             cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence            456999997 333222212111 256788888887432 2332     35678899999987666554432 34456788


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE--CCCcEEEe
Q 004207          690 FQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIW  767 (768)
Q Consensus       690 fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs--~DG~V~IW  767 (768)
                      |++.|.++++-..-.      ..+++.-.....+.++++....+.......++|..++|.|.++.|++.+  .+-.+.++
T Consensus       230 W~~~g~~ll~l~~t~------~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~  303 (561)
T COG5354         230 WQVLGKYLLVLVMTH------TKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVF  303 (561)
T ss_pred             EecCCceEEEEEEEe------eecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeec
Confidence            999988876643211      1111111111245555555433333335678999999999998777665  34455444

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.39  E-value=1.8e-05  Score=98.98  Aligned_cols=157  Identities=13%  Similarity=0.138  Sum_probs=109.9

Q ss_pred             eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccC---------------CCCEEEEEEcCCCCEE-EEEeCCCc
Q 004207          558 VESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEH---------------TQWITDVRFSPSLSRL-ATSSADRT  620 (768)
Q Consensus       558 I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h---------------~~~V~sl~fspdg~~L-aTgs~Dgt  620 (768)
                      -.+|+|+| ++.++++.+.++.|++||..++... .+.+.               -.....|+|+|++..| ++-+.++.
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~  763 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS  763 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence            35799999 5666777778899999998876543 22110               1234679999998855 45556789


Q ss_pred             EEEEECCCCCeeEEE------------eecC--------CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe
Q 004207          621 VRVWDTENPDYSLRT------------FTGH--------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (768)
Q Consensus       621 IrVWDl~t~~~~~~~------------~~~h--------~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~  680 (768)
                      |++||++++...+..            +..+        -....+++|+++|. ++++...++.|++||..++.+.....
T Consensus       764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG  842 (1057)
T PLN02919        764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAG  842 (1057)
T ss_pred             EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEec
Confidence            999999876532111            0000        11346889999986 77777889999999998876654332


Q ss_pred             cC--------------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceE
Q 004207          681 CQ--------------SGATQMRFQPRLGRILAAAIENYISILDVETQVC  716 (768)
Q Consensus       681 ~~--------------~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~  716 (768)
                      ..              .....+++++++..+++-+.++.|++||+.+...
T Consensus       843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        843 TGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            11              1356799999998777777899999999988654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.39  E-value=9.9e-07  Score=92.72  Aligned_cols=156  Identities=14%  Similarity=0.228  Sum_probs=113.3

Q ss_pred             EEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----CeeEE
Q 004207          561 CHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----DYSLR  634 (768)
Q Consensus       561 l~fSpd--g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~----~~~~~  634 (768)
                      |+|+-+  |-. ++.+.+-.|-+-|++++... .+. ..+.|.++.|.-.+++++.|+.+|.|.++|++..    ..+..
T Consensus       217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~  293 (425)
T KOG2695|consen  217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ  293 (425)
T ss_pred             hhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence            466542  323 55566778889999886543 333 4567999999988899999999999999999865    33333


Q ss_pred             EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee---EEEEecCCC---eeEEEEecCCCEEEEEEcCCeEEE
Q 004207          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFKCQSG---ATQMRFQPRLGRILAAAIENYISI  708 (768)
Q Consensus       635 ~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~---i~~~~~~~~---i~sl~fsp~~~~llags~Dg~I~I  708 (768)
                      .+. |.+.|+++.........|.+.+.+|+|++||+|.-++   +..+.+|..   -.-+.+++..+.+++++.|...+|
T Consensus       294 rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi  372 (425)
T KOG2695|consen  294 RLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI  372 (425)
T ss_pred             EEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence            333 8889999987663334555778899999999998777   666664332   122445777888999999999999


Q ss_pred             EECCCceEeeec
Q 004207          709 LDVETQVCRLKL  720 (768)
Q Consensus       709 wD~~t~~~~~~~  720 (768)
                      |.++.+.....+
T Consensus       373 Wsl~~ghLl~ti  384 (425)
T KOG2695|consen  373 WSLDSGHLLCTI  384 (425)
T ss_pred             EecccCceeecc
Confidence            999887665443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.38  E-value=0.00039  Score=74.32  Aligned_cols=157  Identities=12%  Similarity=0.166  Sum_probs=111.9

Q ss_pred             eEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CeEEE--EeccCCCC----------EEEEEEcCCCCEEEEEeCC-CcEE
Q 004207          558 VESCHFSPDGKLLATGGH-DKKAVLWCTES-FTVKS--TLEEHTQW----------ITDVRFSPSLSRLATSSAD-RTVR  622 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~-Dg~I~VWdl~t-~~~~~--tl~~h~~~----------V~sl~fspdg~~LaTgs~D-gtIr  622 (768)
                      -+.++++++|++|+++.. .|.|.|+-+.. +.+..  ....|.+.          +.+..|.|++++|++++-. ..|.
T Consensus        91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~  170 (346)
T COG2706          91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF  170 (346)
T ss_pred             CeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence            377999999999888864 57899998865 33221  12235444          8889999999999887542 3699


Q ss_pred             EEECCCCCeeEE--EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC--e--eEEEEe-------cCCCeeEEE
Q 004207          623 VWDTENPDYSLR--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--S--CAGVFK-------CQSGATQMR  689 (768)
Q Consensus       623 VWDl~t~~~~~~--~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg--~--~i~~~~-------~~~~i~sl~  689 (768)
                      +|+++.+.....  ....-......|.|||+++...+++--+++|-+|.....  +  .+..+.       .......+.
T Consensus       171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh  250 (346)
T COG2706         171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH  250 (346)
T ss_pred             EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence            999997653221  111334567899999999988889999999999998763  2  222221       234467889


Q ss_pred             EecCCCEEEEEEc-CCeEEEEECCCc
Q 004207          690 FQPRLGRILAAAI-ENYISILDVETQ  714 (768)
Q Consensus       690 fsp~~~~llags~-Dg~I~IwD~~t~  714 (768)
                      ++++|++|+++.. .+.|.+|.+...
T Consensus       251 is~dGrFLYasNRg~dsI~~f~V~~~  276 (346)
T COG2706         251 ISPDGRFLYASNRGHDSIAVFSVDPD  276 (346)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEcCC
Confidence            9999999888763 457888877543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=6.1e-06  Score=88.49  Aligned_cols=218  Identities=16%  Similarity=0.146  Sum_probs=132.7

Q ss_pred             eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEE
Q 004207          546 TEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRV  623 (768)
Q Consensus       546 ~~~~~l~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrV  623 (768)
                      +....+..|...|..++|||..+ ++..++.+.+|+|.|+++..++..+..+ ..+++++|.-| .++|+.|...|.|.|
T Consensus       184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV  262 (463)
T ss_pred             chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence            33456788899999999999766 8889999999999999999999888887 68999999886 557788888999999


Q ss_pred             EECCCCCeeEEEeec--CCCCeEEEEEe------CCCCeEEEEEeCCCcEEEEECCC----CeeEEEEecCCCeeEEEEe
Q 004207          624 WDTENPDYSLRTFTG--HSTTVMSLDFH------PSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKCQSGATQMRFQ  691 (768)
Q Consensus       624 WDl~t~~~~~~~~~~--h~~~V~slafs------p~g~~lLaSgs~Dg~I~iWDl~s----g~~i~~~~~~~~i~sl~fs  691 (768)
                      ||++..+..+..+.+  ...+|..|+.-      +.|. +++....  .+.+|.+..    ..++..+...+...++.++
T Consensus       263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~  339 (463)
T KOG1645|consen  263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYH  339 (463)
T ss_pred             EEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeec
Confidence            999987754444433  12344444332      2333 3333322  355565532    2222333334444555555


Q ss_pred             cCCCEEEEEEcC-----------------CeEEEEECCCc---------------------eEee----ecceeEEeecC
Q 004207          692 PRLGRILAAAIE-----------------NYISILDVETQ---------------------VCRL----KLQTLELWNMT  729 (768)
Q Consensus       692 p~~~~llags~D-----------------g~I~IwD~~t~---------------------~~~~----~~~~I~iwd~~  729 (768)
                      +..+.+++....                 ....||..+..                     ..+.    .-..+.+||..
T Consensus       340 ~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~  419 (463)
T KOG1645|consen  340 GVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPH  419 (463)
T ss_pred             CccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccc
Confidence            544444443322                 00111211110                     0000    01156778877


Q ss_pred             CCceEEeccCCCCeeEEEEeCC--CCEEEEEECCCcEEEeC
Q 004207          730 ENKTLTLSAHDKLVSSLAASTV--NGMVASASHDKCVKIWK  768 (768)
Q Consensus       730 ~~~~~~l~~H~~~I~sla~spd--g~~LaSgs~DG~V~IWD  768 (768)
                      +.+++....-+.+|.+++....  +.||++-. |..|+||+
T Consensus       420 s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk  459 (463)
T KOG1645|consen  420 SFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK  459 (463)
T ss_pred             hhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence            7776655555677888776533  34666655 44677763

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=1.7e-06  Score=93.74  Aligned_cols=210  Identities=14%  Similarity=0.140  Sum_probs=145.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 004207          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTEN  628 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t---~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~t  628 (768)
                      -|.+.|+.|... -.+++++++.||.++.|.-..   -+.+..+..|...|.+++.+-++.+++|.+. |..++++|+++
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            477777766543 577999999999999997443   2344556778889999999999999999877 99999999987


Q ss_pred             CCee-EEEeecCCCCeEEEEEeCCCC----eEEEEEeCCCcEEEEECCCCeeE-EEEe--cCCCeeEEEEecCCCEEEEE
Q 004207          629 PDYS-LRTFTGHSTTVMSLDFHPSKE----DLLCSCDNNSEIRYWSINNGSCA-GVFK--CQSGATQMRFQPRLGRILAA  700 (768)
Q Consensus       629 ~~~~-~~~~~~h~~~V~slafsp~g~----~lLaSgs~Dg~I~iWDl~sg~~i-~~~~--~~~~i~sl~fsp~~~~llag  700 (768)
                      -... ...+..-.+.   ++|.....    .+.++.-.++.|.|+|-+...|. ..++  +..+|.++.+.+.+..+++.
T Consensus        86 ~DminmiKL~~lPg~---a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi  162 (558)
T KOG0882|consen   86 FDMINMIKLVDLPGF---AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI  162 (558)
T ss_pred             cchhhhcccccCCCc---eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence            5431 1111111222   22222111    23444556899999998765532 2222  46789999999999999999


Q ss_pred             EcCCeEEEEECCCceEeeecceeEEeecCCCc-eEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          701 AIENYISILDVETQVCRLKLQTLELWNMTENK-TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~-~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ...|.|..|..+..  ....+.-.-|.+.... ++.+........++.|+|++..+.+-+.|..|++++
T Consensus       163 D~~gmVEyWs~e~~--~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~  229 (558)
T KOG0882|consen  163 DISGMVEYWSAEGP--FQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFV  229 (558)
T ss_pred             cccceeEeecCCCc--ccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEE
Confidence            99999999988741  1111111234443332 234556677889999999999999999999999873

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.33  E-value=0.00018  Score=74.81  Aligned_cols=159  Identities=16%  Similarity=0.148  Sum_probs=106.8

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc-------CCCCEEEEEEcCC------CCEEEEEeCCCcEEE
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPS------LSRLATSSADRTVRV  623 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~-------h~~~V~sl~fspd------g~~LaTgs~DgtIrV  623 (768)
                      .-.-++||||+.+||.+...|+|+|||+... .+..+..       -...|..+.|.+-      ...|++...+|.++-
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S  123 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS  123 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence            3456899999999999999999999998753 3334322       2345777777542      225777778988887


Q ss_pred             EECCCC---C-eeE--EEeec-CCCCeEEEEEeCCCCeEEEEEeCCC----------cEEEEECCCCeeE----------
Q 004207          624 WDTENP---D-YSL--RTFTG-HSTTVMSLDFHPSKEDLLCSCDNNS----------EIRYWSINNGSCA----------  676 (768)
Q Consensus       624 WDl~t~---~-~~~--~~~~~-h~~~V~slafsp~g~~lLaSgs~Dg----------~I~iWDl~sg~~i----------  676 (768)
                      |-+..+   + ...  ..+.. +...|.++.++|..+.+++.|....          -+..|.+-++.+-          
T Consensus       124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~  203 (282)
T PF15492_consen  124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDD  203 (282)
T ss_pred             EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcc
Confidence            775321   1 111  22222 4678999999999776665554322          3556654322110          


Q ss_pred             -----------E-----EEe----cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceE
Q 004207          677 -----------G-----VFK----CQSGATQMRFQPRLGRILAAAIENYISILDVETQVC  716 (768)
Q Consensus       677 -----------~-----~~~----~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~  716 (768)
                                 +     .+.    ....|..|..+|++..|++...+|.|.+|++.+...
T Consensus       204 ~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  204 ITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             ccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence                       0     010    145688899999999999999999999999987654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.32  E-value=0.00015  Score=80.21  Aligned_cols=203  Identities=16%  Similarity=0.163  Sum_probs=127.4

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEE----EEeccCCCCEEEEEEcCCC--CEEEE-----EeCCCcEEEEECCC
Q 004207          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSL--SRLAT-----SSADRTVRVWDTEN  628 (768)
Q Consensus       560 sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~----~tl~~h~~~V~sl~fspdg--~~LaT-----gs~DgtIrVWDl~t  628 (768)
                      -+.|+-+.+|+|-.. ...++|+++ +....    ..++  ...|....|+|.+  ..||+     ...++.++||.+..
T Consensus       136 ~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~  211 (561)
T COG5354         136 VLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK  211 (561)
T ss_pred             eeeeeecchhhhhhc-cCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC
Confidence            578888888776442 246999996 33322    2222  3568888999963  33444     35577899999875


Q ss_pred             CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe----------CCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEE
Q 004207          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL  698 (768)
Q Consensus       629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs----------~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~ll  698 (768)
                      +.. +.+..-....-..+.|++.|+.+++-..          .+..+.+++++...+.......++|..++|.|.+..++
T Consensus       212 ~s~-l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~  290 (561)
T COG5354         212 NSV-LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFA  290 (561)
T ss_pred             CCe-eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCcee
Confidence            553 2221111222345789999887766332          13568888888554444445578999999999988766


Q ss_pred             EEE--cCCeEEEEECCCceEeeecc--------------------------eeEEeecCCCceEEeccCCCCeeEEEEeC
Q 004207          699 AAA--IENYISILDVETQVCRLKLQ--------------------------TLELWNMTENKTLTLSAHDKLVSSLAAST  750 (768)
Q Consensus       699 ags--~Dg~I~IwD~~t~~~~~~~~--------------------------~I~iwd~~~~~~~~l~~H~~~I~sla~sp  750 (768)
                      +++  .+-.+.+||++.... ..+.                          .+.+||......+.-.-......-+.|+|
T Consensus       291 vi~g~~pa~~s~~~lr~Nl~-~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wsp  369 (561)
T COG5354         291 VISGYMPASVSVFDLRGNLR-FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSP  369 (561)
T ss_pred             EEecccccceeecccccceE-EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccC
Confidence            554  677888888877522 2111                          56667665544332111112234567999


Q ss_pred             CCCEEEEEE------CCCcEEEeC
Q 004207          751 VNGMVASAS------HDKCVKIWK  768 (768)
Q Consensus       751 dg~~LaSgs------~DG~V~IWD  768 (768)
                      ++.++.+..      .|..|+|||
T Consensus       370 d~qF~~~~~ts~k~~~Dn~i~l~~  393 (561)
T COG5354         370 DGQFYDTDTTSEKLRVDNSIKLWD  393 (561)
T ss_pred             CceEEEecCCCcccccCcceEEEE
Confidence            999887764      478899996

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.31  E-value=0.00012  Score=83.05  Aligned_cols=162  Identities=12%  Similarity=0.066  Sum_probs=101.9

Q ss_pred             CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC
Q 004207          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK  652 (768)
Q Consensus       577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~-LaTgs~D---gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g  652 (768)
                      ..|.+-|.+......... .. .+...+|+||++. ++..+.+   ..|+++|+.+++.  ..+....+.+.+..|+|||
T Consensus       169 ~~l~~~d~dg~~~~~~~~-~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG  244 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVK-GG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG  244 (419)
T ss_pred             ceEEEECCCCCceeEEcc-CC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence            356665665444332333 33 6788999999984 6654444   4689999988764  3333345567778899999


Q ss_pred             CeEEEEEeCC--CcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCceEeeecceeEEee
Q 004207          653 EDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQTLELWN  727 (768)
Q Consensus       653 ~~lLaSgs~D--g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~D-g--~I~IwD~~t~~~~~~~~~I~iwd  727 (768)
                      +.++++.+.+  ..|.++|+.++................|+|+|..|+..+.. +  .|+++|+.++.            
T Consensus       245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~------------  312 (419)
T PRK04043        245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS------------  312 (419)
T ss_pred             CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC------------
Confidence            9888776654  46888898887755444333334556899999988877743 2  35555555433            


Q ss_pred             cCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207          728 MTENKTLTLSAHDKLVSSLAASTVNGMVASASHD  761 (768)
Q Consensus       728 ~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D  761 (768)
                           ...+.....  ....|+|+|++|+..+..
T Consensus       313 -----~~rlt~~g~--~~~~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        313 -----VEQVVFHGK--NNSSVSTYKNYIVYSSRE  339 (419)
T ss_pred             -----eEeCccCCC--cCceECCCCCEEEEEEcC
Confidence                 221111111  124899999988776643

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.30  E-value=0.00019  Score=76.58  Aligned_cols=201  Identities=15%  Similarity=0.166  Sum_probs=132.8

Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCc-EEEEECCCCeEEEEeccCCCCEE--EEEEcCCCCEEEEEeC-----CCcEEEEECC
Q 004207          557 KVESCHFSP-DGKLLATGGHDKK-AVLWCTESFTVKSTLEEHTQWIT--DVRFSPSLSRLATSSA-----DRTVRVWDTE  627 (768)
Q Consensus       557 ~I~sl~fSp-dg~~LaSgs~Dg~-I~VWdl~t~~~~~tl~~h~~~V~--sl~fspdg~~LaTgs~-----DgtIrVWDl~  627 (768)
                      ....++.+| +...++.+-.-|+ ..+||..+++....+....+.-.  ..+|++||++|+|.-.     .|.|-|||..
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            345678888 5556667766665 67899999998877754433322  3579999999999754     4789999999


Q ss_pred             CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe-----------------CCCcEEEEECCCCeeEEEEec-----CCCe
Q 004207          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----------------NNSEIRYWSINNGSCAGVFKC-----QSGA  685 (768)
Q Consensus       628 t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs-----------------~Dg~I~iWDl~sg~~i~~~~~-----~~~i  685 (768)
                      .+-..+..+..|.-....|.+.|+++.|++.-+                 .+..+.+.|.++|+.+.....     .-.+
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi  165 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI  165 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence            555557788888777888999999976665421                 123566778888888777553     2358


Q ss_pred             eEEEEecCCCEEEEEEcCCe-------EEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEE
Q 004207          686 TQMRFQPRLGRILAAAIENY-------ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA  758 (768)
Q Consensus       686 ~sl~fsp~~~~llags~Dg~-------I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSg  758 (768)
                      ..+++.+++..++..-..+.       |.+++....        +.........   ...-...|-+|+++.++.+|++.
T Consensus       166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--------~~~~~~p~~~---~~~l~~Y~gSIa~~~~g~~ia~t  234 (305)
T PF07433_consen  166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--------LRLLPAPEEQ---WRRLNGYIGSIAADRDGRLIAVT  234 (305)
T ss_pred             eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--------ceeccCChHH---HHhhCCceEEEEEeCCCCEEEEE
Confidence            88899998766555544432       222221110        1111111111   12335678999999999887666


Q ss_pred             E-CCCcEEEeC
Q 004207          759 S-HDKCVKIWK  768 (768)
Q Consensus       759 s-~DG~V~IWD  768 (768)
                      | .-+.+.+||
T Consensus       235 sPrGg~~~~~d  245 (305)
T PF07433_consen  235 SPRGGRVAVWD  245 (305)
T ss_pred             CCCCCEEEEEE
Confidence            5 567888885

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.30  E-value=3.2e-06  Score=86.00  Aligned_cols=95  Identities=15%  Similarity=0.339  Sum_probs=73.9

Q ss_pred             cEEEEECCCCeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEE
Q 004207          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (768)
Q Consensus       578 ~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lL  656 (768)
                      ..++|+++-.+.+..-......|.+++-+|. ...+++|+.||.|-+||.+....+...+..|+.+|+.+.|||....-|
T Consensus       160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L  239 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL  239 (319)
T ss_pred             ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence            4556665443322111122334999999995 567888899999999999998887888999999999999999877777


Q ss_pred             EEEeCCCcEEEEECCC
Q 004207          657 CSCDNNSEIRYWSINN  672 (768)
Q Consensus       657 aSgs~Dg~I~iWDl~s  672 (768)
                      ++|++||.+.-||..+
T Consensus       240 ft~sedGslw~wdas~  255 (319)
T KOG4714|consen  240 FTCSEDGSLWHWDAST  255 (319)
T ss_pred             eEecCCCcEEEEcCCC
Confidence            7999999999999873

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.29  E-value=5.2e-05  Score=77.66  Aligned_cols=188  Identities=13%  Similarity=0.057  Sum_probs=119.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEE-EeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCe
Q 004207          566 DGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV  643 (768)
Q Consensus       566 dg~~LaSgs~Dg~I~VWdl~t~~~~~-tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V  643 (768)
                      ...+||.|+..|...+|...+.+... ....|...|+-+.=.. ....+..++.|.++++.+++.+.......... -.+
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~-~~~  161 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN-LTQ  161 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc-cce
Confidence            34579999999999999988655432 3333433333222111 12357778899999999987654322222211 238


Q ss_pred             EEEEEeCCCCeEEEEEeCCCcEEEEECCCCe--eEEEE--ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVF--KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK  719 (768)
Q Consensus       644 ~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~--~i~~~--~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~  719 (768)
                      .+++++++++.+.++ +....|.+|.+....  .+.+.  .....-.+..|+.....++++..||++.|||++.......
T Consensus       162 ns~~~snd~~~~~~V-gds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~  240 (344)
T KOG4532|consen  162 NSLHYSNDPSWGSSV-GDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA  240 (344)
T ss_pred             eeeEEcCCCceEEEe-cCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence            899999998855544 456789999886532  22212  2345567789999989999999999999999987544322


Q ss_pred             cceeEEeecCCCceEEeccCCCCeeEEEEeCCCC--EEEEEECCCcEEE
Q 004207          720 LQTLELWNMTENKTLTLSAHDKLVSSLAASTVNG--MVASASHDKCVKI  766 (768)
Q Consensus       720 ~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~--~LaSgs~DG~V~I  766 (768)
                      ..           ..+-..|.+.|..+.|++.|.  +|+..-.=+.+.|
T Consensus       241 ~~-----------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv  278 (344)
T KOG4532|consen  241 EI-----------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHV  278 (344)
T ss_pred             hh-----------cccCCCCCCceEEEEecCCCcceEEEEecCcceEEE
Confidence            11           112336889999999998653  4443333334443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.29  E-value=2.1e-06  Score=62.79  Aligned_cols=39  Identities=36%  Similarity=0.548  Sum_probs=36.9

Q ss_pred             CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       587 ~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      ++++.++.+|...|++|+|+|++.+|++++.|++|+|||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            367889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.28  E-value=1e-05  Score=93.01  Aligned_cols=207  Identities=16%  Similarity=0.137  Sum_probs=124.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe-eEEEe
Q 004207          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTF  636 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~-~~~~~  636 (768)
                      ++++||+|..-.|+.|-.-|.+.||...+.+.......|..+|..+.|+++|..|+|+..-|.|.+|..+.... ....+
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~  141 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI  141 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence            66799999998999999999999999888777777778999999999999999999999999999998762111 00000


Q ss_pred             ecCC--CCeEE--------------------------EE----E-------------eCCCCeEEEEEeCCCcEEEEECC
Q 004207          637 TGHS--TTVMS--------------------------LD----F-------------HPSKEDLLCSCDNNSEIRYWSIN  671 (768)
Q Consensus       637 ~~h~--~~V~s--------------------------la----f-------------sp~g~~lLaSgs~Dg~I~iWDl~  671 (768)
                      ..|.  ..++-                          ++    |             .|+| ..|+.++.+|+|+..|- 
T Consensus       142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g-~~F~~~~~~GtVyyvdq-  219 (1416)
T KOG3617|consen  142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKG-TEFLFAGKSGTVYYVDQ-  219 (1416)
T ss_pred             hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCC-cEEEEEcCCceEEEEcC-
Confidence            0010  00111                          11    1             1232 34556666777776663 


Q ss_pred             CCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC-CceEeeecceeEEeecCCCc-----------eE----E
Q 004207          672 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQTLELWNMTENK-----------TL----T  735 (768)
Q Consensus       672 sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~-t~~~~~~~~~I~iwd~~~~~-----------~~----~  735 (768)
                      .|.+..+.+..+. ..+.|.+...-+++...+-.+.+|-+. ++...... .+++--...++           ++    .
T Consensus       220 ~g~~~~V~k~dS~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~-~vk~sgk~GgrqGgiA~sEssGvLr~~eK  297 (1416)
T KOG3617|consen  220 NGRQRTVHKLDSE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERC-AVKVSGKLGGRQGGIACSESSGVLRKSEK  297 (1416)
T ss_pred             CCcEEEEEEccch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhh-hhhhccccCCccCccccccccccccCCcc
Confidence            3556555554333 234455544444444444443333221 11110000 00000000000           00    0


Q ss_pred             e-ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          736 L-SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       736 l-~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      + ......++|++++..+..|+.|...|.|.+|.
T Consensus       298 yg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~  331 (1416)
T KOG3617|consen  298 YGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWL  331 (1416)
T ss_pred             hhhhcCCceEEEEEeccceEEEecccCCcEEEee
Confidence            1 12345799999999999999999999999994

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.28  E-value=0.00014  Score=83.68  Aligned_cols=211  Identities=13%  Similarity=0.156  Sum_probs=142.5

Q ss_pred             CCceEEEEecCCCCcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeE
Q 004207          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (768)
Q Consensus       480 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~  559 (768)
                      .....+.|.+........+..   ...-+||++...|.|-+|+.....                   .+..+..|.++|-
T Consensus        56 s~V~~VrWap~~~p~~llS~~---~~~lliAsaD~~GrIil~d~~~~s-------------------~~~~l~~~~~~~q  113 (1062)
T KOG1912|consen   56 SAVTSVRWAPAPSPRDLLSPS---SSQLLIASADISGRIILVDFVLAS-------------------VINWLSHSNDSVQ  113 (1062)
T ss_pred             cceeEEEeccCCCchhccCcc---ccceeEEeccccCcEEEEEehhhh-------------------hhhhhcCCCcchh
Confidence            567777888776532222211   245678888889999999654331                   1334567888899


Q ss_pred             EEEEcC---CC-CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-----
Q 004207          560 SCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENP-----  629 (768)
Q Consensus       560 sl~fSp---dg-~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~-----  629 (768)
                      .++|-+   +. .+|+.-....+|.+|+..+|+.+...........|+.+.| |.+.|+.-+..|.|.+.+.-..     
T Consensus       114 dl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~  193 (1062)
T KOG1912|consen  114 DLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDV  193 (1062)
T ss_pred             heeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCC
Confidence            999977   34 3566666678999999999999988876667788899999 6777888788888887775321     


Q ss_pred             -CeeEEEeecCCC----------------C---------eEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-
Q 004207          630 -DYSLRTFTGHST----------------T---------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-  682 (768)
Q Consensus       630 -~~~~~~~~~h~~----------------~---------V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-  682 (768)
                       .........|..                .         ...++|+|..+++++..- ...+.++|++-..++.++..+ 
T Consensus       194 pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~-prellv~dle~~~~l~vvpier  272 (1062)
T KOG1912|consen  194 PGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF-PRELLVFDLEYECCLAVVPIER  272 (1062)
T ss_pred             CceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe-ccceEEEcchhhceeEEEEecc
Confidence             111222222221                0         122456887666654443 678999999988888877753 


Q ss_pred             CCeeEEEEecCCC--EEEEEEcCCeEEEEECCC
Q 004207          683 SGATQMRFQPRLG--RILAAAIENYISILDVET  713 (768)
Q Consensus       683 ~~i~sl~fsp~~~--~llags~Dg~I~IwD~~t  713 (768)
                      +++.-+.+.|+..  .+++.-.||.+.||-.+.
T Consensus       273 ~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  273 GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             CCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            3455566666554  588888999999986654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.28  E-value=0.0002  Score=88.46  Aligned_cols=199  Identities=14%  Similarity=0.203  Sum_probs=129.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEE----ECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-
Q 004207          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLW----CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-  627 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VW----dl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~-  627 (768)
                      ...+.|.++.|-++...++.+..+|.|.++    +..+.... ....-...|.+++||||+..|+.++.+++|.+-+-+ 
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f  151 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE-IVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF  151 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE-EEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence            345779999999999999999999999999    55443322 122234679999999999999999999888765422 


Q ss_pred             -----------C-CC-eeE--------EEeec------------------------CCCCeEEEEEeCCCCeEEEEEe--
Q 004207          628 -----------N-PD-YSL--------RTFTG------------------------HSTTVMSLDFHPSKEDLLCSCD--  660 (768)
Q Consensus       628 -----------t-~~-~~~--------~~~~~------------------------h~~~V~slafsp~g~~lLaSgs--  660 (768)
                                 . +. ..+        ..|.|                        +...-..|+|-.||.++.++.-  
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~  231 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP  231 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence                       0 00 000        00000                        2234567889999986555443  


Q ss_pred             CC---CcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEc---CCeEEEEECCCceEeeecceeEEeecCCCce
Q 004207          661 NN---SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLKLQTLELWNMTENKT  733 (768)
Q Consensus       661 ~D---g~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~---Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~  733 (768)
                      .+   ..|+||+-+ |....+-+. .+--.+++|.|.|+.|++...   ...|.+|.-+..+.. .+      +      
T Consensus       232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhg-eF------~------  297 (928)
T PF04762_consen  232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHG-EF------T------  297 (928)
T ss_pred             CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEee-eE------e------
Confidence            22   579999965 665544432 233457899999987777664   234555554332211 00      0      


Q ss_pred             EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          734 LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       734 ~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      +.+......|..+.|++++.+||..-.|. |.+|
T Consensus       298 l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLW  330 (928)
T PF04762_consen  298 LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLW  330 (928)
T ss_pred             cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEE
Confidence            11123456789999999999999988665 8888

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.25  E-value=0.00023  Score=73.52  Aligned_cols=179  Identities=13%  Similarity=0.068  Sum_probs=110.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCC---CC
Q 004207          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS---TT  642 (768)
Q Consensus       566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~---~~  642 (768)
                      ++.++++++.++.|+.||..+++.+..+... ..+.... ...+..+++++.++.|+.+|..+++..-.......   ..
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence            5677888889999999999999999887652 2221111 22355677777889999999999886333222221   11


Q ss_pred             eEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCe------------eEEEEecCCCEEEEEEcCCeEEEEE
Q 004207          643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA------------TQMRFQPRLGRILAAAIENYISILD  710 (768)
Q Consensus       643 V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i------------~sl~fsp~~~~llags~Dg~I~IwD  710 (768)
                      ...+.....++ .++++..++.|..+|+++|+.+.........            ..+.+. + +.+++++.++.+..+|
T Consensus       113 ~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~v~~~~~~g~~~~~d  189 (238)
T PF13360_consen  113 RSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-D-GRVYVSSGDGRVVAVD  189 (238)
T ss_dssp             B--SEEEEETT-EEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-T-TEEEEECCTSSEEEEE
T ss_pred             ccccCceEecC-EEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-C-CEEEEEcCCCeEEEEE
Confidence            12222222245 4446666899999999999998887763311            122222 3 3777777777544448


Q ss_pred             CCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          711 VETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       711 ~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +.++...        |...          ...+..+ ...++..|++++.++.|.+||
T Consensus       190 ~~tg~~~--------w~~~----------~~~~~~~-~~~~~~~l~~~~~~~~l~~~d  228 (238)
T PF13360_consen  190 LATGEKL--------WSKP----------ISGIYSL-PSVDGGTLYVTSSDGRLYALD  228 (238)
T ss_dssp             TTTTEEE--------EEEC----------SS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred             CCCCCEE--------EEec----------CCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence            8876532        3211          1112221 345677888888889998886

...

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.24  E-value=3.6e-06  Score=61.53  Aligned_cols=38  Identities=29%  Similarity=0.543  Sum_probs=35.9

Q ss_pred             eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (768)
Q Consensus       546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWd  583 (768)
                      +.+..+.+|.+.|++|+|+|++.+|++++.|++|+|||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46788899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.24  E-value=1.9e-05  Score=91.98  Aligned_cols=151  Identities=19%  Similarity=0.201  Sum_probs=117.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEE
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---------DRTVRVWD  625 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~---------DgtIrVWD  625 (768)
                      .+.|+-++.  +++++.+|...|+|.+-|..+.+.+.++..|++.|.++...  |+.|++|+.         |..|+|||
T Consensus       177 a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYD  252 (1118)
T KOG1275|consen  177 ASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYD  252 (1118)
T ss_pred             CCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--CCeEEEeecccccccccccchhhhhh
Confidence            334666665  68899999999999999999999999999999999876665  889999987         55789999


Q ss_pred             CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEE---CCCC--eeEEEEecCCCeeEEEEecCCCEEEEE
Q 004207          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INNG--SCAGVFKCQSGATQMRFQPRLGRILAA  700 (768)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWD---l~sg--~~i~~~~~~~~i~sl~fsp~~~~llag  700 (768)
                      ++..+. +..+.-+.++ .-+.|+|.-...+|+++..|...+.|   +.+.  ...........+..+++++++..++.+
T Consensus       253 LRmmra-l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafg  330 (1118)
T KOG1275|consen  253 LRMMRA-LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFG  330 (1118)
T ss_pred             hhhhhc-cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEe
Confidence            987553 3333333333 55788998777888888899999999   3332  122222335569999999999999999


Q ss_pred             EcCCeEEEEEC
Q 004207          701 AIENYISILDV  711 (768)
Q Consensus       701 s~Dg~I~IwD~  711 (768)
                      ..+|.|.+|.-
T Consensus       331 d~~g~v~~wa~  341 (1118)
T KOG1275|consen  331 DHEGHVNLWAD  341 (1118)
T ss_pred             cccCcEeeecC
Confidence            99999999974

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.18  E-value=8.4e-05  Score=82.65  Aligned_cols=135  Identities=19%  Similarity=0.231  Sum_probs=93.1

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-----------CCcEEEEECC
Q 004207          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------DRTVRVWDTE  627 (768)
Q Consensus       559 ~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~-----------DgtIrVWDl~  627 (768)
                      +-+.|||.|.||+|-..-| |.+|--++...+..+. |.+ |.-+.|||..+||+|=+.           ...|+|||+.
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            4589999999999987765 9999877766666663 654 899999999999999654           2479999999


Q ss_pred             CCCeeEEEeec--CCCCe-EEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEE
Q 004207          628 NPDYSLRTFTG--HSTTV-MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA  699 (768)
Q Consensus       628 t~~~~~~~~~~--h~~~V-~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~lla  699 (768)
                      +|.. .+.+..  ....+ .-+.|+.|++++....  ...|.||+..+..++..-.. -.+|....|+|.+..|+.
T Consensus       291 tG~l-krsF~~~~~~~~~WP~frWS~DdKy~Arm~--~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  291 TGLL-KRSFPVIKSPYLKWPIFRWSHDDKYFARMT--GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             ccch-hcceeccCCCccccceEEeccCCceeEEec--cceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence            9875 444443  22222 3357998877444333  35799998876443321111 355777778887655443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.17  E-value=3.5e-05  Score=89.07  Aligned_cols=150  Identities=15%  Similarity=0.184  Sum_probs=106.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~  634 (768)
                      .+.|+|++++  +++|+-|..+|.|++++... .. .+...|...      ..+|.+++||+.||+|.|-.+-+.+. ..
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~  107 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT  107 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence            3558888884  78999999999999998764 33 444456543      56799999999999999999887664 33


Q ss_pred             EeecCCCCeEEEEEeCC----CCeEEEEEeCCCcEEEEECC---CCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 004207          635 TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSIN---NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS  707 (768)
Q Consensus       635 ~~~~h~~~V~slafsp~----g~~lLaSgs~Dg~I~iWDl~---sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~  707 (768)
                      .+. ...++.+|+++|+    ....+++|+.-| +.++.-+   +...+..-...+.|.++.|..+  +++.+. |-.|+
T Consensus       108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~--lIAWan-d~Gv~  182 (846)
T KOG2066|consen  108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN--LIAWAN-DDGVK  182 (846)
T ss_pred             eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc--EEEEec-CCCcE
Confidence            333 3468999999998    234567888777 7666532   2222322334788999999854  555554 55599


Q ss_pred             EEECCCceEeeec
Q 004207          708 ILDVETQVCRLKL  720 (768)
Q Consensus       708 IwD~~t~~~~~~~  720 (768)
                      |||+.+...+..+
T Consensus       183 vyd~~~~~~l~~i  195 (846)
T KOG2066|consen  183 VYDTPTRQRLTNI  195 (846)
T ss_pred             EEeccccceeecc
Confidence            9999887665544

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.16  E-value=0.00043  Score=73.88  Aligned_cols=155  Identities=12%  Similarity=0.098  Sum_probs=105.8

Q ss_pred             EEEcCCCCEEEEEeC-----CCcEEEEECC-CCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-----------------
Q 004207          561 CHFSPDGKLLATGGH-----DKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------------  617 (768)
Q Consensus       561 l~fSpdg~~LaSgs~-----Dg~I~VWdl~-t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~-----------------  617 (768)
                      -+||+||++|++.-.     .|.|-|||.. +...+..+..|.-.-..+.+.||++.|+++-.                 
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t  135 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT  135 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence            579999999998733     5789999998 77888888877766778999999988887632                 


Q ss_pred             -CCcEEEEECCCCCeeEE-Ee--ecCCCCeEEEEEeCCCCeEEEEEeCCC-------cEEEEECCCCeeEEEEe------
Q 004207          618 -DRTVRVWDTENPDYSLR-TF--TGHSTTVMSLDFHPSKEDLLCSCDNNS-------EIRYWSINNGSCAGVFK------  680 (768)
Q Consensus       618 -DgtIrVWDl~t~~~~~~-~~--~~h~~~V~slafsp~g~~lLaSgs~Dg-------~I~iWDl~sg~~i~~~~------  680 (768)
                       +-.+...|..+++..-+ .+  .-|...|..+++.++|. +++.+-..|       .|.+++.  +..+..+.      
T Consensus       136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~  212 (305)
T PF07433_consen  136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQW  212 (305)
T ss_pred             cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHH
Confidence             12344555566654222 23  33667899999999876 333433222       1333332  33233232      


Q ss_pred             --cCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEee
Q 004207          681 --CQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRL  718 (768)
Q Consensus       681 --~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~  718 (768)
                        ....+-+|+++.++..+++++ ..+.+.+||..++..+.
T Consensus       213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~  253 (305)
T PF07433_consen  213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLG  253 (305)
T ss_pred             HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEee
Confidence              246789999999998876666 57788999988876654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.05  E-value=0.00029  Score=79.69  Aligned_cols=113  Identities=12%  Similarity=0.148  Sum_probs=79.8

Q ss_pred             eEEEEEcC-CCCEEEEE----eCCCc----EEEEECCCCeEEE---EeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          558 VESCHFSP-DGKLLATG----GHDKK----AVLWCTESFTVKS---TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       558 I~sl~fSp-dg~~LaSg----s~Dg~----I~VWdl~t~~~~~---tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      ..++.||. +...+.|.    +.+|.    -++|++...+...   +-......|.|++++|+...|+.|+.||+|++||
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD  287 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD  287 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence            36677776 33334433    33443    3456665443321   1124667899999999999999999999999999


Q ss_pred             CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe
Q 004207          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  674 (768)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~  674 (768)
                      ...+.   ..+....-.++.++|||+|. +|++|+..|.|.+||+.-..
T Consensus       288 ~~~~~---t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  288 TTRGV---TLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             cCCCe---eeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCc
Confidence            97653   22333456688999999987 77789989999999987443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.04  E-value=7.9e-06  Score=86.10  Aligned_cols=128  Identities=17%  Similarity=0.253  Sum_probs=99.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----eEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004207          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTE  627 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~-----~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~  627 (768)
                      ..+.|.++.|.-.+.+++.|+..|.|.++|++..     .+...+ -|...|+++..-. ++.+|++.+-+|+|++||++
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R  329 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR  329 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence            3466889999988999999999999999999864     344444 4888999998766 67899999999999999998


Q ss_pred             CCCe--eEEEeecCCCCeEEEE--EeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC
Q 004207          628 NPDY--SLRTFTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS  683 (768)
Q Consensus       628 t~~~--~~~~~~~h~~~V~sla--fsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~  683 (768)
                      ..++  .+..+.+|-..-.-+-  .++... ++++++.|...+||.++++..+.++....
T Consensus       330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             hhhcccceeeeecccccccccccccccccc-eEEEccCeeEEEEEecccCceeeccCCCC
Confidence            5442  3678888865443333  344444 56678889999999999999998887643

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.02  E-value=0.0016  Score=73.15  Aligned_cols=176  Identities=11%  Similarity=0.044  Sum_probs=106.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCCC-------CEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCeeEEEeec
Q 004207          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (768)
Q Consensus       568 ~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~-------~V~sl~fsp--dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~  638 (768)
                      ..++.++.++.+..+|.++++.+........       ....+.-+|  .+..++.++.+|.+..+|+.+++..-..-. 
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-  284 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY-  284 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-
Confidence            3566677888999999998887765431110       011111223  245777788899999999998875222111 


Q ss_pred             CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceE
Q 004207          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVC  716 (768)
Q Consensus       639 h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~  716 (768)
                        .....+..  .+..+ +.++.+|.|..+|..+++.+.....  .....+..+  .++++++++.+|.|+++|..+++.
T Consensus       285 --~~~~~~~~--~~~~v-y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~  357 (394)
T PRK11138        285 --GSVNDFAV--DGGRI-YLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRF  357 (394)
T ss_pred             --CCccCcEE--ECCEE-EEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence              11222222  23434 4566799999999999987664432  112222222  256889999999999999988765


Q ss_pred             eeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          717 RLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       717 ~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .....      +         ..........+.  ++.|+.++.||.|+.++
T Consensus       358 ~~~~~------~---------~~~~~~s~P~~~--~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        358 VAQQK------V---------DSSGFLSEPVVA--DDKLLIQARDGTVYAIT  392 (394)
T ss_pred             EEEEE------c---------CCCcceeCCEEE--CCEEEEEeCCceEEEEe
Confidence            43221      1         011111122222  55788999999998764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.98  E-value=0.00078  Score=78.75  Aligned_cols=184  Identities=14%  Similarity=0.152  Sum_probs=117.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCC-EEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC-
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSSADR-----TVRVWDTENP-  629 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~-V~sl~fspdg~~LaTgs~Dg-----tIrVWDl~t~-  629 (768)
                      .|+|  |++.+..+|.|+.||.|.+++- ..+.+..+..+... |..+.....-.+|++.+.|+     .|+|||++.- 
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            4554  5678889999999999999874 34555677777666 44443333346888887776     4999998643 


Q ss_pred             --C--eeE---EEee----cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC---C-C-eeEEEEecCCCeeEEEEecC
Q 004207          630 --D--YSL---RTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---N-G-SCAGVFKCQSGATQMRFQPR  693 (768)
Q Consensus       630 --~--~~~---~~~~----~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~---s-g-~~i~~~~~~~~i~sl~fsp~  693 (768)
                        .  .++   +.+.    ....++.+++.+.+- ..+|+|-.+|.|.++.-.   . + +.........+|+.+.+..+
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d  182 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD  182 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence              1  122   2221    124678889999884 467788889999988421   1 1 22233345788999999888


Q ss_pred             CCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE
Q 004207          694 LGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS  759 (768)
Q Consensus       694 ~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs  759 (768)
                      +..++.+..-..|.+|.+......               ...+..|...++|..+++....|++++
T Consensus       183 ~~s~lFv~Tt~~V~~y~l~gr~p~---------------~~~ld~~G~~lnCss~~~~t~qfIca~  233 (933)
T KOG2114|consen  183 GKSVLFVATTEQVMLYSLSGRTPS---------------LKVLDNNGISLNCSSFSDGTYQFICAG  233 (933)
T ss_pred             CceeEEEEecceeEEEEecCCCcc---------------eeeeccCCccceeeecCCCCccEEEec
Confidence            877555555667888887643311               112335555666666665544344443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.96  E-value=0.0022  Score=66.08  Aligned_cols=147  Identities=11%  Similarity=0.044  Sum_probs=93.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCC---CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCC
Q 004207          566 DGKLLATGGHDKKAVLWCTESFTVKSTL-EEHT---QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST  641 (768)
Q Consensus       566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl-~~h~---~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~  641 (768)
                      ++..+++++.|+.|+.+|..+++.+... ....   ..........++..++.+..++.|..+|+++++. +-.......
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~-~w~~~~~~~  153 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL-LWKYPVGEP  153 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE-EEEEESSTT
T ss_pred             cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE-EEEeecCCC
Confidence            4556667778889999999999999884 3221   1112222222377888888899999999999876 433333321


Q ss_pred             C----------eEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 004207          642 T----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV  711 (768)
Q Consensus       642 ~----------V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~  711 (768)
                      .          +.+-....++ .++ .++.++.+..+|+.+++.+.... ...+.. .....++.+++++.++.|.+||+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~-~v~-~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~  229 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVISDG-RVY-VSSGDGRVVAVDLATGEKLWSKP-ISGIYS-LPSVDGGTLYVTSSDGRLYALDL  229 (238)
T ss_dssp             -SS--EEEETTEEEEEECCTT-EEE-EECCTSSEEEEETTTTEEEEEEC-SS-ECE-CEECCCTEEEEEETTTEEEEEET
T ss_pred             CCCcceeeecccccceEEECC-EEE-EEcCCCeEEEEECCCCCEEEEec-CCCccC-CceeeCCEEEEEeCCCEEEEEEC
Confidence            1          1122222233 444 55656654444999999765333 233332 24567788888889999999999


Q ss_pred             CCceEe
Q 004207          712 ETQVCR  717 (768)
Q Consensus       712 ~t~~~~  717 (768)
                      ++++..
T Consensus       230 ~tG~~~  235 (238)
T PF13360_consen  230 KTGKVV  235 (238)
T ss_dssp             TTTEEE
T ss_pred             CCCCEE
Confidence            998764

...

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.96  E-value=0.00032  Score=79.40  Aligned_cols=76  Identities=18%  Similarity=0.189  Sum_probs=64.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004207          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~  630 (768)
                      .....|.|++++|+.+.|+.|+.||.|++||...+....+  ...-.++.++|+|+|.+|++|+..|.|.+||+.-..
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            4567899999999999999999999999999876543322  344567899999999999999999999999987543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.94  E-value=0.0023  Score=72.03  Aligned_cols=146  Identities=10%  Similarity=0.003  Sum_probs=90.2

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCC---
Q 004207          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT---  642 (768)
Q Consensus       566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~---  642 (768)
                      ++..++.++.++.|+.+|.++++.+...........+....  +..++.++.++.|..+|.++++. +-.+......   
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~  195 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS--DGLVLVHTSNGMLQALNESDGAV-KWTVNLDVPSLTL  195 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE--CCEEEEECCCCEEEEEEccCCCE-eeeecCCCCcccc
Confidence            45667778889999999999999988775433211111222  45677788899999999999875 3222211100   


Q ss_pred             --eEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC--------eeEEEEec--CCCEEEEEEcCCeEEEEE
Q 004207          643 --VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--------ATQMRFQP--RLGRILAAAIENYISILD  710 (768)
Q Consensus       643 --V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~--------i~sl~fsp--~~~~llags~Dg~I~IwD  710 (768)
                        ..+....  +. .++.++.++.+..+|..+|+.+........        ...+..+|  .++.+++++.++.+..+|
T Consensus       196 ~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald  272 (394)
T PRK11138        196 RGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD  272 (394)
T ss_pred             cCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence              0111111  12 344566789999999999987765542111        00111111  246778888889999999


Q ss_pred             CCCceEe
Q 004207          711 VETQVCR  717 (768)
Q Consensus       711 ~~t~~~~  717 (768)
                      ..+++..
T Consensus       273 ~~tG~~~  279 (394)
T PRK11138        273 LRSGQIV  279 (394)
T ss_pred             CCCCCEE
Confidence            8887544

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.89  E-value=0.00037  Score=80.65  Aligned_cols=149  Identities=11%  Similarity=0.046  Sum_probs=103.7

Q ss_pred             EcCCCCEEEE-EeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC------------------------
Q 004207          563 FSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA------------------------  617 (768)
Q Consensus       563 fSpdg~~LaS-gs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~------------------------  617 (768)
                      +++||+.+.. .-..+.+.+.|.++.+....+.... ....+.++++++++++.+.                        
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni  278 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI  278 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence            3456654432 2334567777888777776664332 3456777888877777652                        


Q ss_pred             ----------------CCcEEEEECCC----CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe---
Q 004207          618 ----------------DRTVRVWDTEN----PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---  674 (768)
Q Consensus       618 ----------------DgtIrVWDl~t----~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~---  674 (768)
                                      +++|.|.|..+    +...+..+. -......|+++|||+++++++..+.+|.|+|+.+.+   
T Consensus       279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~  357 (635)
T PRK02888        279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF  357 (635)
T ss_pred             HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence                            24577777776    222233333 445678899999999999999999999999998744   


Q ss_pred             ---------eEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207          675 ---------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       675 ---------~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                               .+......-.....+|.++|..+.+..-|..|..||+.+
T Consensus       358 ~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        358 DGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                     344555555566789999988777778899999999876

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.88  E-value=6.2e-06  Score=92.85  Aligned_cols=188  Identities=15%  Similarity=0.227  Sum_probs=125.7

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEe----CCCcEE
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGG----HDKKAV  580 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs----~Dg~I~  580 (768)
                      ..++++|..+|.|-+-......+.                 ......+|...+++++|++ |.++||.|-    .|..+.
T Consensus        70 ~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~  132 (783)
T KOG1008|consen   70 RCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK  132 (783)
T ss_pred             hhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence            468899999999988866555432                 1233468889999999998 777888773    356799


Q ss_pred             EEECCCC--eEEE--Eecc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeE
Q 004207          581 LWCTESF--TVKS--TLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL  655 (768)
Q Consensus       581 VWdl~t~--~~~~--tl~~-h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~l  655 (768)
                      |||+.++  .+..  .+.+ -.....+++|..+.+++++|.....|+++|++........+  ....|..+...|-...+
T Consensus       133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY  210 (783)
T KOG1008|consen  133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNY  210 (783)
T ss_pred             ceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCc
Confidence            9999875  2211  1111 33456689999889999999999999999998422111111  23456677778855557


Q ss_pred             EEEEeCCCcEEEEE-CCCCe-eEEEEec-----CCCeeEEEEecCCCE-EEEEEc-CCeEEEEECCC
Q 004207          656 LCSCDNNSEIRYWS-INNGS-CAGVFKC-----QSGATQMRFQPRLGR-ILAAAI-ENYISILDVET  713 (768)
Q Consensus       656 LaSgs~Dg~I~iWD-l~sg~-~i~~~~~-----~~~i~sl~fsp~~~~-llags~-Dg~I~IwD~~t  713 (768)
                      +|+.. ||.|.+|| .++-+ .+..+..     ...+..++|.|...- +++... .++|+.||+..
T Consensus       211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            76555 99999999 44322 2222221     234888999997544 444443 47789998854

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.85  E-value=0.00079  Score=81.32  Aligned_cols=198  Identities=16%  Similarity=0.211  Sum_probs=127.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC----C--
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE----N--  628 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~----t--  628 (768)
                      .+.|.++.|..+..-++.+..+|.|.+.|.++..... ...-...|.+++|+||...++..+.+.+|.+-+-.    .  
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            3679999999999999999999999999887754332 22235679999999999999999888877654321    0  


Q ss_pred             ---------CCe-------eEEEeecC---------------------CCCeEEEEEeCCCCeEEEEE---eCC-CcEEE
Q 004207          629 ---------PDY-------SLRTFTGH---------------------STTVMSLDFHPSKEDLLCSC---DNN-SEIRY  667 (768)
Q Consensus       629 ---------~~~-------~~~~~~~h---------------------~~~V~slafsp~g~~lLaSg---s~D-g~I~i  667 (768)
                               .+.       .-..+.+.                     .+.=++|+|--||..+.++.   ..+ ..|+|
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence                     000       00111111                     11224588988887544322   223 78999


Q ss_pred             EECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEE---cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCe
Q 004207          668 WSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA---IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLV  743 (768)
Q Consensus       668 WDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags---~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I  743 (768)
                      ||-+ |..-..-.. .+--.+++|-|.|..+++..   +|+.|.+|..+.......             .+.+......|
T Consensus       227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f-------------~l~~p~de~~v  292 (1265)
T KOG1920|consen  227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEF-------------VLPFPLDEKEV  292 (1265)
T ss_pred             eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccc-------------ccCCcccccch
Confidence            9977 443322221 23356899999888777754   466788887655322110             11122233348


Q ss_pred             eEEEEeCCCCEEEE---EECCCcEEEe
Q 004207          744 SSLAASTVNGMVAS---ASHDKCVKIW  767 (768)
Q Consensus       744 ~sla~spdg~~LaS---gs~DG~V~IW  767 (768)
                      ..++|+.++..|++   ......|++|
T Consensus       293 e~L~Wns~sdiLAv~~~~~e~~~v~lw  319 (1265)
T KOG1920|consen  293 EELAWNSNSDILAVVTSNLENSLVQLW  319 (1265)
T ss_pred             heeeecCCCCceeeeecccccceEEEE
Confidence            99999999998887   4444458888

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.80  E-value=1.5e-05  Score=92.04  Aligned_cols=125  Identities=17%  Similarity=0.232  Sum_probs=92.6

Q ss_pred             CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC-cE
Q 004207          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-EI  665 (768)
Q Consensus       587 ~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg-~I  665 (768)
                      .+...++..|+...+|++|+-+.++|+.|+..|.|++|++.+|.. .....+|.+.|+-|.-+-+|..+|.+++... ..
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCchH
Confidence            345567778889999999999999999999999999999999875 6788899999999999889887776665544 56


Q ss_pred             EEEECCC-CeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004207          666 RYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV  715 (768)
Q Consensus       666 ~iWDl~s-g~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~  715 (768)
                      .+|++.+ +...++|.   .-.++.|+.....-+.|+......+||+.+..
T Consensus      1170 aLW~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred             HHhccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCc
Confidence            7898864 34444443   23455666554444445555566777777653

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.79  E-value=0.0035  Score=73.47  Aligned_cols=191  Identities=12%  Similarity=0.144  Sum_probs=123.5

Q ss_pred             cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCC----
Q 004207          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDK----  577 (768)
Q Consensus       503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg----  577 (768)
                      +.....|+.|+.||.|...+.                    .+..+..+.++...|...-|.-++ .+|++.+.|+    
T Consensus        32 ~s~~~~vvigt~~G~V~~Ln~--------------------s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np   91 (933)
T KOG2114|consen   32 SSSTGSVVIGTADGRVVILNS--------------------SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNP   91 (933)
T ss_pred             cCCCceEEEeeccccEEEecc--------------------cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCc
Confidence            445668889999998887732                    233445566776664333444444 6788777765    


Q ss_pred             -cEEEEECCCC---e---EE--EEecc-----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---CCCeeEEEeecCC
Q 004207          578 -KAVLWCTESF---T---VK--STLEE-----HTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPDYSLRTFTGHS  640 (768)
Q Consensus       578 -~I~VWdl~t~---~---~~--~tl~~-----h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~---t~~~~~~~~~~h~  640 (768)
                       .|+||+++..   +   ++  ..+..     ...++.+++.+.+-..+|+|-.+|.|..+.-+   .............
T Consensus        92 ~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~  171 (933)
T KOG2114|consen   92 VLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK  171 (933)
T ss_pred             eEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC
Confidence             4899998642   2   22  11112     25678899999998899999999999988532   1111233344456


Q ss_pred             CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee-EEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004207          641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQV  715 (768)
Q Consensus       641 ~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~-i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~  715 (768)
                      .+|+.+++..++..+++++. ...|.+|.+....+ ...+.. +..+.|..|++....+++++ +..|.+||.....
T Consensus       172 ~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  172 EPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG  246 (933)
T ss_pred             CCceeeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence            89999999998887443443 34799999984442 333443 45577888887655455544 4668899887543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.75  E-value=0.014  Score=61.39  Aligned_cols=209  Identities=11%  Similarity=0.138  Sum_probs=114.1

Q ss_pred             EEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          548 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       548 ~~~l~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~~~~~tl~~h-~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      -+.+.+-...|..|+|+|+.+ ++++....+.|..++.+ ++++..+... .+....|++..++.++++.-.++.+.+++
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            345566666799999999755 66677778888888874 7888776433 35688999988887777766689999998


Q ss_pred             CCCCCe--eE---EEe-----ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC---CeeEEEEe---------cCC
Q 004207          626 TENPDY--SL---RTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGVFK---------CQS  683 (768)
Q Consensus       626 l~t~~~--~~---~~~-----~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s---g~~i~~~~---------~~~  683 (768)
                      +.....  ..   ..+     ..+...+-.|+|++.+..++++.- ..-..+|.+..   ...+....         ...
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEccccCccceeeccccccccccceec
Confidence            843221  11   111     124566899999999888886654 44455655542   22222111         124


Q ss_pred             CeeEEEEecCCCEEEEEEc-CCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 004207          684 GATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK  762 (768)
Q Consensus       684 ~i~sl~fsp~~~~llags~-Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG  762 (768)
                      .+..+.++|..+.+++-+. ...|.++|... ...      ..+.+..+.. -+...-.-.-.|+|.++|.+. ..++-+
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d~~G-~~~------~~~~L~~g~~-gl~~~~~QpEGIa~d~~G~LY-IvsEpN  242 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELDRQG-RVV------SSLSLDRGFH-GLSKDIPQPEGIAFDPDGNLY-IVSEPN  242 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE-TT---EE------EEEE-STTGG-G-SS---SEEEEEE-TT--EE-EEETTT
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEECCCC-CEE------EEEEeCCccc-CcccccCCccEEEECCCCCEE-EEcCCc
Confidence            5788999999888777664 56677888443 332      2233332210 000011235689999988644 455666


Q ss_pred             cEEEe
Q 004207          763 CVKIW  767 (768)
Q Consensus       763 ~V~IW  767 (768)
                      .+++|
T Consensus       243 lfy~f  247 (248)
T PF06977_consen  243 LFYRF  247 (248)
T ss_dssp             EEEEE
T ss_pred             eEEEe
Confidence            66665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.74  E-value=0.00093  Score=75.65  Aligned_cols=161  Identities=19%  Similarity=0.203  Sum_probs=102.8

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEE---eCC-CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEE-eCCCc--EEE
Q 004207          551 IPASTSKVESCHFSPDGKLLATG---GHD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRT--VRV  623 (768)
Q Consensus       551 l~~H~~~I~sl~fSpdg~~LaSg---s~D-g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTg-s~Dgt--IrV  623 (768)
                      +......+..-+|+|++..++..   ... ..+.++++.+++....+. ..+.-...+|+|||+.|+.+ ..||.  |++
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~  266 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL  266 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence            33445567778999999865543   222 358999999876554443 23334567899998876554 45664  566


Q ss_pred             EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc--EEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE
Q 004207          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA  701 (768)
Q Consensus       624 WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~--I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags  701 (768)
                      +|+....  +..+....+.-+.-.|+|+|+.++++.+..|.  |.++|++.+...+.......-..-.|+|+|.+++..+
T Consensus       267 ~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         267 MDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             EcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEe
Confidence            6776654  33344333334467799999999999888876  4555666555444333333333778999999988877


Q ss_pred             cC-Ce--EEEEECCCc
Q 004207          702 IE-NY--ISILDVETQ  714 (768)
Q Consensus       702 ~D-g~--I~IwD~~t~  714 (768)
                      .. |.  |.++|+.+.
T Consensus       345 ~~~g~~~i~~~~~~~~  360 (425)
T COG0823         345 SSGGQWDIDKNDLASG  360 (425)
T ss_pred             ccCCceeeEEeccCCC
Confidence            43 33  555655544

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.70  E-value=0.0018  Score=74.47  Aligned_cols=130  Identities=12%  Similarity=0.103  Sum_probs=89.7

Q ss_pred             ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004207          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (768)
Q Consensus       502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~V  581 (768)
                      ++..+.+++.|+.-|.+.+|....+.-                  ......+-.+.+..+++|++..++|.|+..|.|.|
T Consensus        41 ~dst~~~l~~GsS~G~lyl~~R~~~~~------------------~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v  102 (726)
T KOG3621|consen   41 VDATEEYLAMGSSAGSVYLYNRHTGEM------------------RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSV  102 (726)
T ss_pred             eecCCceEEEecccceEEEEecCchhh------------------hcccccCccceEEEEEecchhHhhhhhcCCceEEe
Confidence            456788999999999999996543310                  00111123455777788888889999999999999


Q ss_pred             EECCCCeE-----EEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---CeeEEEeecCCCCeEEEEEe
Q 004207          582 WCTESFTV-----KSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFH  649 (768)
Q Consensus       582 Wdl~t~~~-----~~tl-~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~---~~~~~~~~~h~~~V~slafs  649 (768)
                      +-+.....     +... +.|...|+|++|++++..|++|...|+|..-.++..   ......+....+.|.-|+..
T Consensus       103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             ehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            97665221     1111 347789999999999999999999999998888762   11123333345667666654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=0.00033  Score=75.51  Aligned_cols=94  Identities=14%  Similarity=0.220  Sum_probs=79.9

Q ss_pred             EEEEECCCCeEEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEE
Q 004207          579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC  657 (768)
Q Consensus       579 I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~-~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLa  657 (768)
                      |++.+..+.+....+..|...|.+++|+|..+ ++..++.+.+|+|.|+++... +..+..| ..+++++|+-+..++++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-vssy~a~-~~~wSC~wDlde~h~IY  252 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-VSSYIAY-NQIWSCCWDLDERHVIY  252 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee-eeheecc-CCceeeeeccCCcceeE
Confidence            66776666666667778888999999999766 788999999999999998654 6677767 78999999999999999


Q ss_pred             EEeCCCcEEEEECCCCe
Q 004207          658 SCDNNSEIRYWSINNGS  674 (768)
Q Consensus       658 Sgs~Dg~I~iWDl~sg~  674 (768)
                      .|..+|.|.|||++..+
T Consensus       253 aGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  253 AGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             EeccCceEEEEEccCCC
Confidence            99999999999998643

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.67  E-value=0.0075  Score=65.32  Aligned_cols=205  Identities=13%  Similarity=0.164  Sum_probs=123.4

Q ss_pred             EEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeEEEEeccCCC-C------EEEEEEcCCCCEEEEEeC--CC
Q 004207          559 ESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHTQ-W------ITDVRFSPSLSRLATSSA--DR  619 (768)
Q Consensus       559 ~sl~fSpdg~~LaSgs~----------Dg~I~VWdl~t~~~~~tl~~h~~-~------V~sl~fspdg~~LaTgs~--Dg  619 (768)
                      -.+.++||++.+++++.          .-.|.+||..+..+...+.-..+ .      ...+.++.|+++++....  --
T Consensus        39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~  118 (342)
T PF06433_consen   39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT  118 (342)
T ss_dssp             EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred             CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence            34667999998876532          33689999999988876643332 1      223567778887776543  34


Q ss_pred             cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC-CCeeEEEEe----c-CCC-eeEEEEec
Q 004207          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFK----C-QSG-ATQMRFQP  692 (768)
Q Consensus       620 tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~-sg~~i~~~~----~-~~~-i~sl~fsp  692 (768)
                      .|.|-|+...+. +..+.- .+   |....|.++.-|.+-+.||.+....+. .|+......    . ..+ +..-.+..
T Consensus       119 SVtVVDl~~~kv-v~ei~~-PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~  193 (342)
T PF06433_consen  119 SVTVVDLAAKKV-VGEIDT-PG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR  193 (342)
T ss_dssp             EEEEEETTTTEE-EEEEEG-TS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred             eEEEEECCCCce-eeeecC-CC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC
Confidence            688888887665 444331 22   222334443345566669999888887 455442221    1 111 22334555


Q ss_pred             CCCEEEEEEcCCeEEEEECCCceEeeecc-----------------------------------------------eeEE
Q 004207          693 RLGRILAAAIENYISILDVETQVCRLKLQ-----------------------------------------------TLEL  725 (768)
Q Consensus       693 ~~~~llags~Dg~I~IwD~~t~~~~~~~~-----------------------------------------------~I~i  725 (768)
                      .++.++..+.+|.|+-.|+..........                                               .|-+
T Consensus       194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv  273 (342)
T PF06433_consen  194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV  273 (342)
T ss_dssp             TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred             CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence            56677778888888877776543211110                                               5666


Q ss_pred             eecCCCceEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 004207          726 WNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK  768 (768)
Q Consensus       726 wd~~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs-~DG~V~IWD  768 (768)
                      +|+.+.+.+.-..-...|.+|.++.+.. +|++.+ .++.|.|||
T Consensus       274 ~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D  318 (342)
T PF06433_consen  274 YDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD  318 (342)
T ss_dssp             EETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             EECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence            6777777764444345688999998775 666554 578999986

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.63  E-value=0.012  Score=66.02  Aligned_cols=157  Identities=15%  Similarity=0.181  Sum_probs=114.2

Q ss_pred             eEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCeeE
Q 004207          558 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSL  633 (768)
Q Consensus       558 I~sl~fSpdg~~-LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~---DgtIrVWDl~t~~~~~  633 (768)
                      -.++++++++.. +++...+..|.+.|..+.+.......-. ....++|+++++.++.+..   +++|.+.|..+.+...
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            456788888884 4455556899999988877776664333 5678999999988777766   6888888888877644


Q ss_pred             EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE-----EEecCCCeeEEEEecCCCEEEEEEcC---Ce
Q 004207          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAAAIE---NY  705 (768)
Q Consensus       634 ~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~-----~~~~~~~i~sl~fsp~~~~llags~D---g~  705 (768)
                      . ......+ ..+++.|++..++++-..++.|.++|.......+     ..........+.+++++.++++....   +.
T Consensus       155 ~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~  232 (381)
T COG3391         155 T-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN  232 (381)
T ss_pred             E-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence            4 3332334 8899999999888777789999999987665553     12234456778999999977766544   48


Q ss_pred             EEEEECCCceEe
Q 004207          706 ISILDVETQVCR  717 (768)
Q Consensus       706 I~IwD~~t~~~~  717 (768)
                      +.+.|..+....
T Consensus       233 v~~id~~~~~v~  244 (381)
T COG3391         233 VLKIDTATGNVT  244 (381)
T ss_pred             EEEEeCCCceEE
Confidence            888888776543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.62  E-value=0.012  Score=60.54  Aligned_cols=104  Identities=11%  Similarity=0.014  Sum_probs=66.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEE
Q 004207          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  645 (768)
Q Consensus       566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~s  645 (768)
                      -|++++.|+..|.+++.+.++++....+.....--......+++..+..++.|++.+..|.++... +...+...+...+
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c-VykskcgG~~f~s  140 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC-VYKSKCGGGTFVS  140 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccce-EEecccCCceecc
Confidence            477899999999999999999987766643322112233567889999999999999999998665 4444433333344


Q ss_pred             EEEeCCCCeEEEEEeCCCcEEEEECC
Q 004207          646 LDFHPSKEDLLCSCDNNSEIRYWSIN  671 (768)
Q Consensus       646 lafsp~g~~lLaSgs~Dg~I~iWDl~  671 (768)
                      -+..|-...+++ +...|.|.--...
T Consensus       141 P~i~~g~~sly~-a~t~G~vlavt~~  165 (354)
T KOG4649|consen  141 PVIAPGDGSLYA-AITAGAVLAVTKN  165 (354)
T ss_pred             ceecCCCceEEE-EeccceEEEEccC
Confidence            445553233443 2334444433333

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.62  E-value=0.012  Score=71.59  Aligned_cols=161  Identities=15%  Similarity=0.189  Sum_probs=99.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----C-------------------CeEEEEeccCC-------------
Q 004207          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE----S-------------------FTVKSTLEEHT-------------  597 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~----t-------------------~~~~~tl~~h~-------------  597 (768)
                      -...|.+++||||..+++..+.+++|.+-+-.    .                   |+....+.+..             
T Consensus       108 vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek  187 (1265)
T KOG1920|consen  108 VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK  187 (1265)
T ss_pred             ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence            34569999999999999988887777664320    0                   11111121100             


Q ss_pred             --------CCEEEEEEcCCCCEEEEEe----CC-CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEE--eCC
Q 004207          598 --------QWITDVRFSPSLSRLATSS----AD-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNN  662 (768)
Q Consensus       598 --------~~V~sl~fspdg~~LaTgs----~D-gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSg--s~D  662 (768)
                              +.=+.|.|.-||.++|+..    .+ ..|+|||-+ +.. -.+-....+--.+++|-|.|..+.+..  ..|
T Consensus       188 ~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd  265 (1265)
T KOG1920|consen  188 ALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSD  265 (1265)
T ss_pred             cccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh-hcccCcccccccceeecCCCCeEeeeeecCCC
Confidence                    1124589999999998842    23 789999987 321 111112234456799999877444332  246


Q ss_pred             CcEEEEECC---CCeeEEEEecCC-CeeEEEEecCCCEEEE---EEcCCeEEEEECCCceE
Q 004207          663 SEIRYWSIN---NGSCAGVFKCQS-GATQMRFQPRLGRILA---AAIENYISILDVETQVC  716 (768)
Q Consensus       663 g~I~iWDl~---sg~~i~~~~~~~-~i~sl~fsp~~~~lla---gs~Dg~I~IwD~~t~~~  716 (768)
                      +.|.+|.-.   .|+.+..+.... .+..++|+.++..|++   ......|.+|-+.+...
T Consensus       266 ~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW  326 (1265)
T KOG1920|consen  266 SDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW  326 (1265)
T ss_pred             CcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence            678888743   233222233223 3889999999887776   33344599999877643

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.58  E-value=0.0061  Score=69.36  Aligned_cols=145  Identities=12%  Similarity=0.145  Sum_probs=81.7

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE-ECCCC
Q 004207          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW-DTENP  629 (768)
Q Consensus       551 l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVW-Dl~t~  629 (768)
                      +....-....+.++|+|++++++ .||.-.||.....+....     +.-..++|..+ ..+|+-....+|.|+ +++..
T Consensus        28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-
T ss_pred             CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCccc
Confidence            33444457889999999999885 578888888555554432     22346779885 457777778899996 34322


Q ss_pred             CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 004207          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL  709 (768)
Q Consensus       630 ~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~Iw  709 (768)
                      .  ...+.. ...+..|-.   |. +|+..+ ++.|.+||+.+++.++.+.... |..+.|++++.+++..+.+ .+.|+
T Consensus       101 ~--~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il  170 (443)
T PF04053_consen  101 V--VKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYIL  170 (443)
T ss_dssp             T--T------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred             c--ceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEE
Confidence            1  112221 122444433   55 444444 4489999999999999998643 8999999998888777655 56665


Q ss_pred             ECC
Q 004207          710 DVE  712 (768)
Q Consensus       710 D~~  712 (768)
                      +..
T Consensus       171 ~~~  173 (443)
T PF04053_consen  171 KYN  173 (443)
T ss_dssp             EE-
T ss_pred             Eec
Confidence            543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.58  E-value=0.0074  Score=67.79  Aligned_cols=175  Identities=15%  Similarity=0.109  Sum_probs=104.1

Q ss_pred             ceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe--cc------CCCCEEEEEEcC-----CC
Q 004207          543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EE------HTQWITDVRFSP-----SL  609 (768)
Q Consensus       543 ~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl--~~------h~~~V~sl~fsp-----dg  609 (768)
                      ..|.++..+....++|++|+.| |=.++|+|..+|.+.|.|++...++..-  ..      ....|+++.|.-     |+
T Consensus        74 ~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~  152 (395)
T PF08596_consen   74 EGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG  152 (395)
T ss_dssp             EEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred             cccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence            3577888888889999999997 6669999999999999999888877652  22      234688888862     22


Q ss_pred             ---CEEEEEeCCCcEEEEECCC---CCeeE---EEeecCCCCeEEEE-EeCC-C-------------------CeEEEEE
Q 004207          610 ---SRLATSSADRTVRVWDTEN---PDYSL---RTFTGHSTTVMSLD-FHPS-K-------------------EDLLCSC  659 (768)
Q Consensus       610 ---~~LaTgs~DgtIrVWDl~t---~~~~~---~~~~~h~~~V~sla-fsp~-g-------------------~~lLaSg  659 (768)
                         -+|++|...|.+.+|.+.-   +...+   .....+.++|..|. |+.+ |                   ..+++++
T Consensus       153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv  232 (395)
T PF08596_consen  153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV  232 (395)
T ss_dssp             SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred             ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence               4789999999999998752   22222   12224667777766 3221 0                   1244444


Q ss_pred             eCCCcEEEEECCCCeeEEEEecCCC--eeEEEEe-----cCCCEEEEEEcCCeEEEEECCCceEeeec
Q 004207          660 DNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQ-----PRLGRILAAAIENYISILDVETQVCRLKL  720 (768)
Q Consensus       660 s~Dg~I~iWDl~sg~~i~~~~~~~~--i~sl~fs-----p~~~~llags~Dg~I~IwD~~t~~~~~~~  720 (768)
                      + +..|+++...+.+..+... ...  ...+++-     ..+..|++...+|.|++|.+...+.+...
T Consensus       233 S-e~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~  298 (395)
T PF08596_consen  233 S-ESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSV  298 (395)
T ss_dssp             --SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred             c-ccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcc
Confidence            4 6789999998877766554 332  2234442     24456788889999999999887665443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.00037  Score=79.03  Aligned_cols=94  Identities=16%  Similarity=0.168  Sum_probs=80.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 004207          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~-sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~  634 (768)
                      -.|.-+.|+|.-.+||++..+|.|.++.+. ...+.++.-|...++ +++|.|||+.||+|-.||+|++.|++++.....
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            458889999999999999999999999987 777888887777777 999999999999999999999999999876444


Q ss_pred             EeecCCCCeEEEEEeC
Q 004207          635 TFTGHSTTVMSLDFHP  650 (768)
Q Consensus       635 ~~~~h~~~V~slafsp  650 (768)
                      ........|.++.|.+
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence            3344567788888874

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.50  E-value=3.8e-05  Score=86.70  Aligned_cols=198  Identities=13%  Similarity=0.109  Sum_probs=122.3

Q ss_pred             CCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCeE--EEEeccCCCCEEEEEEcC-CCCEEEEEe----CCCcEEEEE
Q 004207          555 TSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSS----ADRTVRVWD  625 (768)
Q Consensus       555 ~~~I~sl~fSpdg--~~LaSgs~Dg~I~VWdl~t~~~--~~tl~~h~~~V~sl~fsp-dg~~LaTgs----~DgtIrVWD  625 (768)
                      ...+.|+++.-+.  ..+++|..+|.|.+-.+....-  .....+|....++++|++ |.++||.|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            3457788876644  3788999999999987654322  234456778899999998 556677663    255799999


Q ss_pred             CCCCC----eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE
Q 004207          626 TENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA  701 (768)
Q Consensus       626 l~t~~----~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags  701 (768)
                      +.+.-    .......+......+++|..+ ..++.+|.....|.++|+|........-....+..+.++|-..-.++..
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             cccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc
Confidence            98651    111111223455678999965 4467788888899999998322111111123455667777333345666


Q ss_pred             cCCeEEEEEC-CCceEeeecceeEEeecCCCceEEeccC----CCCeeEEEEeCCC-CEEEEEEC-CCcEEEeC
Q 004207          702 IENYISILDV-ETQVCRLKLQTLELWNMTENKTLTLSAH----DKLVSSLAASTVN-GMVASASH-DKCVKIWK  768 (768)
Q Consensus       702 ~Dg~I~IwD~-~t~~~~~~~~~I~iwd~~~~~~~~l~~H----~~~I~sla~spdg-~~LaSgs~-DG~V~IWD  768 (768)
                      .|+.|.+||. +..+...               ..+...    ...+..++|+|.. ..+++.+. .++|+++|
T Consensus       215 ~dg~iAiwD~~rnienpl---------------~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd  273 (783)
T KOG1008|consen  215 SDGDIAIWDTYRNIENPL---------------QIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD  273 (783)
T ss_pred             ccCceeeccchhhhccHH---------------HHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence            6999999994 3221110               000011    1237889999865 45666655 45677664

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.50  E-value=0.0065  Score=70.56  Aligned_cols=196  Identities=10%  Similarity=0.088  Sum_probs=119.0

Q ss_pred             CCCEEEEEeC-CCcEEEEECCCCeEEEEecc-CCCCEEEEE-------------------EcCCCCEEEE-EeCCCcEEE
Q 004207          566 DGKLLATGGH-DKKAVLWCTESFTVKSTLEE-HTQWITDVR-------------------FSPSLSRLAT-SSADRTVRV  623 (768)
Q Consensus       566 dg~~LaSgs~-Dg~I~VWdl~t~~~~~tl~~-h~~~V~sl~-------------------fspdg~~LaT-gs~DgtIrV  623 (768)
                      ||+||++-.. ..+|-..+++..++...++. ....+..++                   +.|||+.+.. .-..+.+.+
T Consensus       140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv  219 (635)
T PRK02888        140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA  219 (635)
T ss_pred             ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence            7888887653 55677777776665443321 111222222                   3345544322 223456777


Q ss_pred             EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe---------------------------------------CCCc
Q 004207          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---------------------------------------NNSE  664 (768)
Q Consensus       624 WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs---------------------------------------~Dg~  664 (768)
                      .|.++.+..-....+  +....++++++|+++++++.                                       .++.
T Consensus       220 ID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~  297 (635)
T PRK02888        220 VDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSK  297 (635)
T ss_pred             EECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCE
Confidence            777765542233322  24456777888877776651                                       1245


Q ss_pred             EEEEECCC-----CeeEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceEEecc
Q 004207          665 IRYWSINN-----GSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSA  738 (768)
Q Consensus       665 I~iWDl~s-----g~~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~  738 (768)
                      |.++|.++     ...+..+........+.++|++.++++++ .+++|.|+|+.+.+.....+ |   +.+..-.....-
T Consensus       298 V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~-~---~~~~~vvaevev  373 (635)
T PRK02888        298 VPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK-I---KPRDAVVAEPEL  373 (635)
T ss_pred             EEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc-C---CccceEEEeecc
Confidence            88888887     46677777778889999999999988776 58999999998854321111 1   111111111111


Q ss_pred             CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          739 HDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       739 H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                       .......+|.++|....|-.-|..|..||
T Consensus       374 -GlGPLHTaFDg~G~aytslf~dsqv~kwn  402 (635)
T PRK02888        374 -GLGPLHTAFDGRGNAYTTLFLDSQIVKWN  402 (635)
T ss_pred             -CCCcceEEECCCCCEEEeEeecceeEEEe
Confidence             23345678899988888888899999996

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.50  E-value=0.0072  Score=65.99  Aligned_cols=172  Identities=12%  Similarity=0.119  Sum_probs=103.4

Q ss_pred             CcEEEEECCCCeEEEEeccC-CCCEEEEE---EcCC----CCEEEEEeC----------CCcEEEEECCCC-----CeeE
Q 004207          577 KKAVLWCTESFTVKSTLEEH-TQWITDVR---FSPS----LSRLATSSA----------DRTVRVWDTENP-----DYSL  633 (768)
Q Consensus       577 g~I~VWdl~t~~~~~tl~~h-~~~V~sl~---fspd----g~~LaTgs~----------DgtIrVWDl~t~-----~~~~  633 (768)
                      ..|++.|..+.+.+.++.-. ...|++++   |..+    ..+|++|..          .|.|.++++...     +...
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            35888888888777655322 23344443   3332    467777654          288999999873     2222


Q ss_pred             EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe-eEEEEecCC--CeeEEEEecCCCEEEEEEcCCeEEEEE
Q 004207          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQS--GATQMRFQPRLGRILAAAIENYISILD  710 (768)
Q Consensus       634 ~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~-~i~~~~~~~--~i~sl~fsp~~~~llags~Dg~I~IwD  710 (768)
                      .......++|++|+-.  ++.++++.  ++.|.+|++...+ ....-....  .+.++...  ++++++|.....|.++.
T Consensus        82 i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~  155 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLR  155 (321)
T ss_dssp             EEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred             EEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEE
Confidence            2233457889999876  34455443  5799999998777 554444333  45555444  56899998878777764


Q ss_pred             CCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          711 VETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       711 ~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      ......     .+.        .+.-......++++.|-++++.++++..+|.|.++
T Consensus       156 ~~~~~~-----~l~--------~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l  199 (321)
T PF03178_consen  156 YDEENN-----KLI--------LVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVL  199 (321)
T ss_dssp             EETTTE------EE--------EEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEE
T ss_pred             EEccCC-----EEE--------EEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEE
Confidence            332110     000        11111234458888888666799999999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.45  E-value=0.024  Score=65.80  Aligned_cols=151  Identities=16%  Similarity=0.126  Sum_probs=89.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCCCC--EEEEEEcC--CCCEEEEEe---------CCCcEEEEECCCCCeeEE
Q 004207          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--ITDVRFSP--SLSRLATSS---------ADRTVRVWDTENPDYSLR  634 (768)
Q Consensus       568 ~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~--V~sl~fsp--dg~~LaTgs---------~DgtIrVWDl~t~~~~~~  634 (768)
                      ..++.++.++.|+.+|.++++.+..+......  -..+.-+|  .+.+++.++         .++.|..+|..+++..-.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            67778888999999999999999887543321  01111122  124455553         367899999998875322


Q ss_pred             EeecCC-------------------CCe-EEEEEeCCCCeEEEEEeCCC------------------cEEEEECCCCeeE
Q 004207          635 TFTGHS-------------------TTV-MSLDFHPSKEDLLCSCDNNS------------------EIRYWSINNGSCA  676 (768)
Q Consensus       635 ~~~~h~-------------------~~V-~slafsp~g~~lLaSgs~Dg------------------~I~iWDl~sg~~i  676 (768)
                      ......                   ..| .+.++++.+..++ .++.++                  .|.-+|+.+|+.+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~-vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~  269 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVY-VGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK  269 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEE-EECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence            211111                   001 1234444444344 554444                  7999999999998


Q ss_pred             EEEecCCC-e------eEEEEe----cCCC---EEEEEEcCCeEEEEECCCceEeee
Q 004207          677 GVFKCQSG-A------TQMRFQ----PRLG---RILAAAIENYISILDVETQVCRLK  719 (768)
Q Consensus       677 ~~~~~~~~-i------~sl~fs----p~~~---~llags~Dg~I~IwD~~t~~~~~~  719 (768)
                      ..+..... .      ....+.    -++.   .+++++.+|.+..+|.++++.+..
T Consensus       270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~  326 (488)
T cd00216         270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA  326 (488)
T ss_pred             EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence            88764211 1      111111    1222   477778899999999988876543

The alignment model contains an 8-bladed beta-propeller.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.44  E-value=0.04  Score=62.25  Aligned_cols=155  Identities=15%  Similarity=0.128  Sum_probs=91.4

Q ss_pred             eEEEEEcCCCCEEEEE-eCCC----cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC-----------cE
Q 004207          558 VESCHFSPDGKLLATG-GHDK----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV  621 (768)
Q Consensus       558 I~sl~fSpdg~~LaSg-s~Dg----~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg-----------tI  621 (768)
                      +..+++||||++||.+ +..|    .|+|+|+++++.+....... ....+.|.++++.|+....+.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            4467899999988855 3334    59999999998775332111 123499999988877766544           37


Q ss_pred             EEEECCCCCee-EEEeecCCCC--eEEEEEeCCCCeEEEEEeCC---CcEEEEECCCC-----eeEEEEecCCCeeEEEE
Q 004207          622 RVWDTENPDYS-LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNN---SEIRYWSINNG-----SCAGVFKCQSGATQMRF  690 (768)
Q Consensus       622 rVWDl~t~~~~-~~~~~~h~~~--V~slafsp~g~~lLaSgs~D---g~I~iWDl~sg-----~~i~~~~~~~~i~sl~f  690 (768)
                      +.|.+.++... ...+......  ...+..+++++.+++.....   ..|.+.|+..+     ...........+....-
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            88888776432 3344433332  56788999999888766543   35888888864     33333333334433332


Q ss_pred             ecCCCEEEEEEcC----CeEEEEECCCc
Q 004207          691 QPRLGRILAAAIE----NYISILDVETQ  714 (768)
Q Consensus       691 sp~~~~llags~D----g~I~IwD~~t~  714 (768)
                      +. +..++..+.+    +.|...++...
T Consensus       285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~  311 (414)
T PF02897_consen  285 HH-GDRLYILTNDDAPNGRLVAVDLADP  311 (414)
T ss_dssp             EE-TTEEEEEE-TT-TT-EEEEEETTST
T ss_pred             cc-CCEEEEeeCCCCCCcEEEEeccccc
Confidence            33 4444444432    45555665543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.42  E-value=0.00052  Score=79.54  Aligned_cols=110  Identities=15%  Similarity=0.233  Sum_probs=85.3

Q ss_pred             eEEEEEcCCCCEEEEEeC----CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 004207          558 VESCHFSPDGKLLATGGH----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~----Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~  633 (768)
                      -+-++|+|...+|++++.    .|.|.||- ++|++-....- .-.+++++|+|..-.|+.|-.-|.+.||...+.+. -
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-h   94 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-H   94 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCcee-e
Confidence            344689999999888754    57888884 56665433321 22367899999988899999999999999887664 4


Q ss_pred             EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC
Q 004207          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (768)
Q Consensus       634 ~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~  671 (768)
                      .....|..+|..+.|+++|. .+++++.-|.|.+|...
T Consensus        95 tv~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   95 TVVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence            45556999999999999988 55599999999999765

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.37  E-value=0.033  Score=61.73  Aligned_cols=160  Identities=17%  Similarity=0.198  Sum_probs=89.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccC----------------CCCEEEEEEcCCCCEEEEEeC
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEH----------------TQWITDVRFSPSLSRLATSSA  617 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl-~~h----------------~~~V~sl~fspdg~~LaTgs~  617 (768)
                      ...+....|||+|++||... ++.|.+++..++...... .+-                -+.-..+.||||+++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            56788999999999998875 578999998777544221 110                112356889999999888654


Q ss_pred             CC------------------------------------cEEEEECCCCCee-EEEe---ecCCCCeEEEEEeCCCCeEEE
Q 004207          618 DR------------------------------------TVRVWDTENPDYS-LRTF---TGHSTTVMSLDFHPSKEDLLC  657 (768)
Q Consensus       618 Dg------------------------------------tIrVWDl~t~~~~-~~~~---~~h~~~V~slafsp~g~~lLa  657 (768)
                      |.                                    .+.|+|+.+++.. +...   ..-...+..+.|.+++..+++
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            31                                    2334444444321 1111   123445788899998773443


Q ss_pred             -EEeCCC---cEEEEECCCCeeEEEEec--CC---CeeEEEEe-cCCCEEEEEE-cCCe--EEEEECCCce
Q 004207          658 -SCDNNS---EIRYWSINNGSCAGVFKC--QS---GATQMRFQ-PRLGRILAAA-IENY--ISILDVETQV  715 (768)
Q Consensus       658 -Sgs~Dg---~I~iWDl~sg~~i~~~~~--~~---~i~sl~fs-p~~~~llags-~Dg~--I~IwD~~t~~  715 (768)
                       ..+.+.   .+.++|..++.+...+..  ..   ....+.|. +++..++..+ .+|.  |.+++..++.
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~  271 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK  271 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc
Confidence             333332   466678877665443332  11   12345554 6666555444 5554  5566665553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.33  E-value=0.035  Score=62.40  Aligned_cols=194  Identities=17%  Similarity=0.173  Sum_probs=106.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-------------------------------------------EEEEe
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-------------------------------------------VKSTL  593 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~-------------------------------------------~~~tl  593 (768)
                      .|+++.|+++..-|++|...|.|.||.....+                                           +...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            48999999998899999999999998542110                                           11122


Q ss_pred             ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEE-eec------CCCCeEEEEEeC-----CC--CeEEEEE
Q 004207          594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FTG------HSTTVMSLDFHP-----SK--EDLLCSC  659 (768)
Q Consensus       594 ~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~-~~~------h~~~V~slafsp-----~g--~~lLaSg  659 (768)
                      ....++|++++.+ |-.++|.|..+|.+.|.|++.+...... +..      ....|+++.|.-     |+  .-++++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            3356789999997 5569999999999999999876653331 111      234688888852     21  2356688


Q ss_pred             eCCCcEEEEECC-C--Ce----eEEEE-ecCCCeeEEE-EecCC--------------------CEEEEEEcCCeEEEEE
Q 004207          660 DNNSEIRYWSIN-N--GS----CAGVF-KCQSGATQMR-FQPRL--------------------GRILAAAIENYISILD  710 (768)
Q Consensus       660 s~Dg~I~iWDl~-s--g~----~i~~~-~~~~~i~sl~-fsp~~--------------------~~llags~Dg~I~IwD  710 (768)
                      ...|.+.+|.+. .  +.    ..... ...+.+..+. |+.+.                    .-+++.+.+..|+++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            889999999874 1  21    11121 2234444444 32221                    2245556677788888


Q ss_pred             CCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEE-----eCCCCEEEEEECCCcEEEe
Q 004207          711 VETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAA-----STVNGMVASASHDKCVKIW  767 (768)
Q Consensus       711 ~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~-----spdg~~LaSgs~DG~V~IW  767 (768)
                      ..+.+..++.     |+           ..-....+++     ...+..|++-..||.|++|
T Consensus       242 ~~~~k~~~K~-----~~-----------~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~  287 (395)
T PF08596_consen  242 PPKSKGAHKS-----FD-----------DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY  287 (395)
T ss_dssp             TT---EEEEE------S-----------S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred             CCCCccccee-----ec-----------cccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence            7776554321     11           0001112222     2235577777888888876

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.28  E-value=0.013  Score=64.99  Aligned_cols=100  Identities=17%  Similarity=0.183  Sum_probs=63.3

Q ss_pred             cCCCCEEEEE---------eCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 004207          564 SPDGKLLATG---------GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (768)
Q Consensus       564 Spdg~~LaSg---------s~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~  634 (768)
                      |||+++++..         +..+.+.|||+++++....... ...+....|+|+|+.++... ++.|.+++..++.....
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            5788876663         2246789999999766644333 56788999999999998875 67899999876643222


Q ss_pred             Eeec-------C---------CCCeEEEEEeCCCCeEEEEEeCCCcE
Q 004207          635 TFTG-------H---------STTVMSLDFHPSKEDLLCSCDNNSEI  665 (768)
Q Consensus       635 ~~~~-------h---------~~~V~slafsp~g~~lLaSgs~Dg~I  665 (768)
                      +..+       -         -+.-..+.|+|+++.+++.--++..|
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v  125 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREV  125 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCC
Confidence            2222       0         12235688999998777655444433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.20  E-value=0.092  Score=55.66  Aligned_cols=142  Identities=16%  Similarity=0.141  Sum_probs=90.2

Q ss_pred             CCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEE---------
Q 004207          566 DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT---------  635 (768)
Q Consensus       566 dg~~LaSgs~Dg~I~VWdl~t-~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~---------  635 (768)
                      .++.|+.|..+| |.+|++.. .+.....  +...|..+...++-+.|++-+ |+.|+++++..-......         
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            678899999888 99999833 3333333  233499999999877776664 599999998754322210         


Q ss_pred             ----eecCCCCeEEEE--EeCCCCeEEEEEeCCCcEEEEECCC----C-eeEEEEecCCCeeEEEEecCCCEEEEEEcCC
Q 004207          636 ----FTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINN----G-SCAGVFKCQSGATQMRFQPRLGRILAAAIEN  704 (768)
Q Consensus       636 ----~~~h~~~V~sla--fsp~g~~lLaSgs~Dg~I~iWDl~s----g-~~i~~~~~~~~i~sl~fsp~~~~llags~Dg  704 (768)
                          .......+...+  -...+...++++. ...|.+|....    . ...+.+.....+..++|..  +.++++..+ 
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~--~~i~v~~~~-  157 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG--NKICVGTSK-  157 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC--CEEEEEeCC-
Confidence                111223344444  1233344554444 55888887654    2 5667788889999999994  466666544 


Q ss_pred             eEEEEECCCce
Q 004207          705 YISILDVETQV  715 (768)
Q Consensus       705 ~I~IwD~~t~~  715 (768)
                      ...++|+.++.
T Consensus       158 ~f~~idl~~~~  168 (275)
T PF00780_consen  158 GFYLIDLNTGS  168 (275)
T ss_pred             ceEEEecCCCC
Confidence            47778887543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.12  E-value=0.0093  Score=67.64  Aligned_cols=154  Identities=16%  Similarity=0.105  Sum_probs=96.1

Q ss_pred             CeEEEEeccCCCCEEEEEEcCCCCEEEEEeC---C-CcEEEEECCCCCeeE-EEeecCCCCeEEEEEeCCCCeEEEEEeC
Q 004207          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSA---D-RTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (768)
Q Consensus       587 ~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~---D-gtIrVWDl~t~~~~~-~~~~~h~~~V~slafsp~g~~lLaSgs~  661 (768)
                      +.....+......+..-+|+|++..++..+.   . ..|.++|++++.... ..+.   +.-....|+|+|+.++++...
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~---g~~~~P~fspDG~~l~f~~~r  258 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN---GNNGAPAFSPDGSKLAFSSSR  258 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC---CccCCccCCCCCCEEEEEECC
Confidence            3444444444556778889999887655432   2 358999999876422 2223   344567899999999988888


Q ss_pred             CCc--EEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcC-Ce--EEEEECCCceEeeecceeEEeecCCCceEEe
Q 004207          662 NSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-NY--ISILDVETQVCRLKLQTLELWNMTENKTLTL  736 (768)
Q Consensus       662 Dg~--I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~D-g~--I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l  736 (768)
                      ||.  |.++|+..+...+.....+.-+.-.|+|+|.+++.++.. |.  |.++|++....                 ..+
T Consensus       259 dg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-----------------~ri  321 (425)
T COG0823         259 DGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-----------------TRL  321 (425)
T ss_pred             CCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-----------------eEe
Confidence            876  555677776644422233334467899999998887653 32  44555544322                 111


Q ss_pred             ccCCCCeeEEEEeCCCCEEEEEEC
Q 004207          737 SAHDKLVSSLAASTVNGMVASASH  760 (768)
Q Consensus       737 ~~H~~~I~sla~spdg~~LaSgs~  760 (768)
                      ......-..-.|+|+|++|+..+.
T Consensus       322 T~~~~~~~~p~~SpdG~~i~~~~~  345 (425)
T COG0823         322 TFSGGGNSNPVWSPDGDKIVFESS  345 (425)
T ss_pred             eccCCCCcCccCCCCCCEEEEEec
Confidence            111121226678999998887774

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.12  E-value=0.0034  Score=72.32  Aligned_cols=136  Identities=15%  Similarity=0.154  Sum_probs=94.9

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee--
Q 004207          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--  632 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl-~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~--  632 (768)
                      ..|.--+++..+++++.|+.-|.|++|+...+.....- .+..+.+..+..+++..++|.|+..|.|.|+-+......  
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            34544556668899999999999999998776554322 234455666778888888999999999999988653211  


Q ss_pred             --E-EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC-----eeEEEEecCCCeeEEEEec
Q 004207          633 --L-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQP  692 (768)
Q Consensus       633 --~-~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg-----~~i~~~~~~~~i~sl~fsp  692 (768)
                        + ..-..|...|+|++|++++..++ +|+..|.|.+-.+.+.     .....+.....|..+.+..
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q  180 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ  180 (726)
T ss_pred             eeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc
Confidence              1 11233788999999999988555 9999999998877761     1222333345566655543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.11  E-value=0.033  Score=50.73  Aligned_cols=102  Identities=18%  Similarity=0.201  Sum_probs=75.5

Q ss_pred             eEEEEE---eCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207          643 VMSLDF---HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK  719 (768)
Q Consensus       643 V~slaf---sp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~  719 (768)
                      |++|++   ..+|..-|++|+.|..|++|+-  .+++..+.....+++++-... ..++.+..+|+|-+|+-.       
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~-------   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS-------   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc-------
Confidence            455554   4466677889999999999975  478888888888999888776 679999999999999863       


Q ss_pred             cceeEEeecCCCceEEeccCCCCeeEEEEeCC---C-CEEEEEECCCcEEE
Q 004207          720 LQTLELWNMTENKTLTLSAHDKLVSSLAASTV---N-GMVASASHDKCVKI  766 (768)
Q Consensus       720 ~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd---g-~~LaSgs~DG~V~I  766 (768)
                         .++|.+.+.         ..++++++..-   | .-|++|-.+|.|-+
T Consensus        72 ---~RlWRiKSK---------~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   72 ---QRLWRIKSK---------NQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             ---ceeeeeccC---------CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence               467766532         23566655432   2 37889988998754

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.11  E-value=0.01  Score=67.62  Aligned_cols=137  Identities=12%  Similarity=0.167  Sum_probs=80.4

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------CeeEEEe
Q 004207          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----------DYSLRTF  636 (768)
Q Consensus       567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~----------~~~~~~~  636 (768)
                      |.+|+..+.+ .|.+||+.+++.+..+...  +|..|.|++++++++..+.+ ++.|++.+..          +..+..+
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~  192 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI  192 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred             CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE
Confidence            7777777654 8999999999999999643  48999999999999988755 6777776532          0123333


Q ss_pred             ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       637 ~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                      ..-...|.+.+|..+  .++.|.. . .|+.  +-.|..........++.-+.+.+..+.++....|+.|..+.+..
T Consensus       193 ~E~~~~IkSg~W~~d--~fiYtT~-~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  193 HEISERIKSGCWVED--CFIYTTS-N-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             EEE-S--SEEEEETT--EEEEE-T-T-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             EEecceeEEEEEEcC--EEEEEcC-C-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence            333568999999865  3444433 3 7776  44454433333356677777888777888888888887776643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.08  E-value=0.17  Score=53.27  Aligned_cols=152  Identities=12%  Similarity=0.242  Sum_probs=93.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----E--EEEe-----ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT----V--KSTL-----EEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~----~--~~tl-----~~h~~~V~sl~fspdg~~LaTgs~DgtIrVW  624 (768)
                      +....|++..++.++++.-.++.+.++++....    .  ...+     ..++..+..|+|++.+..|+.+-...-..||
T Consensus        65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~  144 (248)
T PF06977_consen   65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLY  144 (248)
T ss_dssp             SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEE
T ss_pred             CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhE
Confidence            457888998778777766668999999873311    1  1111     1245668999999988888888777777777


Q ss_pred             ECCC--CCeeE--EEe------ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC----------C
Q 004207          625 DTEN--PDYSL--RTF------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS----------G  684 (768)
Q Consensus       625 Dl~t--~~~~~--~~~------~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~----------~  684 (768)
                      .+..  ....+  ...      ......+.+++++|..+++++..+.+..|.++| ..|+.+..+....          .
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~Q  223 (248)
T PF06977_consen  145 EVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQ  223 (248)
T ss_dssp             EEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---S
T ss_pred             EEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCC
Confidence            7653  21111  111      113356899999999999999999999999999 6688877776533          3


Q ss_pred             eeEEEEecCCCEEEEEEcCCeEEEE
Q 004207          685 ATQMRFQPRLGRILAAAIENYISIL  709 (768)
Q Consensus       685 i~sl~fsp~~~~llags~Dg~I~Iw  709 (768)
                      .-.|+|.++| .|+.++.-+..++|
T Consensus       224 pEGIa~d~~G-~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  224 PEGIAFDPDG-NLYIVSEPNLFYRF  247 (248)
T ss_dssp             EEEEEE-TT---EEEEETTTEEEEE
T ss_pred             ccEEEECCCC-CEEEEcCCceEEEe
Confidence            6789999986 57777777766665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>smart00320 WD40 WD40 repeats

Probab=97.07  E-value=0.0016  Score=44.81  Aligned_cols=39  Identities=41%  Similarity=0.578  Sum_probs=34.3

Q ss_pred             CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       587 ~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      +++...+..|...|.++.|++++.++++++.|+.|++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.06  E-value=0.042  Score=59.96  Aligned_cols=151  Identities=14%  Similarity=0.179  Sum_probs=92.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004207          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~-~~~tl~-~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~  630 (768)
                      ...++|++|+-- .+. |+++. .+.|++|++...+ ....-. .....|.++...  ++++++|.....|.++.++...
T Consensus        86 ~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~  160 (321)
T PF03178_consen   86 EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEEN  160 (321)
T ss_dssp             EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTT
T ss_pred             eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccC
Confidence            346789998876 444 44443 4789999988776 443222 122367777666  4599999988888887554322


Q ss_pred             --eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-------Ce----eEEEEecCCCeeEE---EEecC-
Q 004207          631 --YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GS----CAGVFKCQSGATQM---RFQPR-  693 (768)
Q Consensus       631 --~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-------g~----~i~~~~~~~~i~sl---~fsp~-  693 (768)
                        .....-......+++++|.++++ .+++++.+|.|.++....       +.    .+..+..+..|+++   ++.|. 
T Consensus       161 ~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~  239 (321)
T PF03178_consen  161 NKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRS  239 (321)
T ss_dssp             E-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--S
T ss_pred             CEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecC
Confidence              22222233455689999987765 777899999999987652       22    33445557778877   44452 


Q ss_pred             -CC------EEEEEEcCCeEEEE
Q 004207          694 -LG------RILAAAIENYISIL  709 (768)
Q Consensus       694 -~~------~llags~Dg~I~Iw  709 (768)
                       ..      .++.++.+|.|.+.
T Consensus       240 ~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  240 GSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             SSS-TTEEEEEEEEETTS-EEEE
T ss_pred             CCCcccccceEEEEecCCEEEEE
Confidence             22      38888899988744

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.03  E-value=0.3  Score=54.09  Aligned_cols=142  Identities=14%  Similarity=0.196  Sum_probs=74.8

Q ss_pred             ccccC-CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCCC
Q 004207          500 NQLTD-MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDK  577 (768)
Q Consensus       500 ~~l~~-~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~I~sl~fSpdg~~LaSgs~Dg  577 (768)
                      ..+.+ ..++|..+..|+.-.+|...-.              ++    ++.-+..+. .......++++.+.++-...+.
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~--------------t~----~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~  102 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLA--------------TG----EITQLTDGPGDNTFGGFLSPDDRALYYVKNGR  102 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETT--------------T-----EEEE---SS-B-TTT-EE-TTSSEEEEEETTT
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcc--------------cC----EEEECccCCCCCccceEEecCCCeEEEEECCC
Confidence            33443 3466677777888888743211              11    122222222 1222456678888877666667


Q ss_pred             cEEEEECCCCeEEEEeccCCCCEEEEEEc--CCCCEEEEEeC----------------------CCcEEEEECCCCCeeE
Q 004207          578 KAVLWCTESFTVKSTLEEHTQWITDVRFS--PSLSRLATSSA----------------------DRTVRVWDTENPDYSL  633 (768)
Q Consensus       578 ~I~VWdl~t~~~~~tl~~h~~~V~sl~fs--pdg~~LaTgs~----------------------DgtIrVWDl~t~~~~~  633 (768)
                      .|+..|+++.+....+......+-...|.  .++..++..-.                      ...|..-|+.+++.  
T Consensus       103 ~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~--  180 (386)
T PF14583_consen  103 SLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER--  180 (386)
T ss_dssp             EEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E--
T ss_pred             eEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce--
Confidence            89999999988776666667766666674  35655544321                      13455557776653  


Q ss_pred             EEeecCCCCeEEEEEeCCCCeEEEEEeC
Q 004207          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (768)
Q Consensus       634 ~~~~~h~~~V~slafsp~g~~lLaSgs~  661 (768)
                      ..+..-...+..+-|+|....+|+-|-+
T Consensus       181 ~~v~~~~~wlgH~~fsP~dp~li~fCHE  208 (386)
T PF14583_consen  181 KVVFEDTDWLGHVQFSPTDPTLIMFCHE  208 (386)
T ss_dssp             EEEEEESS-EEEEEEETTEEEEEEEEE-
T ss_pred             eEEEecCccccCcccCCCCCCEEEEecc
Confidence            3333345667889999988888877753

>smart00320 WD40 WD40 repeats

Probab=97.02  E-value=0.0017  Score=44.64  Aligned_cols=37  Identities=38%  Similarity=0.592  Sum_probs=33.1

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (768)
Q Consensus       547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWd  583 (768)
                      .+..+..|...|.++.|++++.++++++.|+.|++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4556678999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=97.01  E-value=0.001  Score=46.87  Aligned_cols=31  Identities=29%  Similarity=0.476  Sum_probs=28.2

Q ss_pred             HhhHHHHHHHHHhcCChHHHHHHHHHhcCCC
Q 004207            9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVS   39 (768)
Q Consensus         9 ~~~L~~yiydyl~k~~~~~~A~~~~~e~~~~   39 (768)
                      +..|+..|++||.+.|+.++|++|.+|.++.
T Consensus         3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        3 RSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            4568999999999999999999999998764

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.00  E-value=0.077  Score=59.52  Aligned_cols=160  Identities=17%  Similarity=0.206  Sum_probs=117.3

Q ss_pred             CeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCee
Q 004207          557 KVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYS  632 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~---Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVWDl~t~~~~  632 (768)
                      .-..++|+++++.+.++..   +++|.+.|..+.+...+...-..+ ..++++|++..++.+. .+++|.+.|...... 
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v-  194 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV-  194 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce-
Confidence            4667899999987777655   688999999998888776544444 8999999999766665 688999999776443 


Q ss_pred             EEE----eecCCCCeEEEEEeCCCCeEEEEEeCC--CcEEEEECCCCeeEEE-EecCC-CeeEEEEecCCCEEEEEEc-C
Q 004207          633 LRT----FTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGV-FKCQS-GATQMRFQPRLGRILAAAI-E  703 (768)
Q Consensus       633 ~~~----~~~h~~~V~slafsp~g~~lLaSgs~D--g~I~iWDl~sg~~i~~-~~~~~-~i~sl~fsp~~~~llags~-D  703 (768)
                      .+.    ...-......+.+.+++..+.++...+  +.+...|..++..... ..... ....+.++|++.++.+... .
T Consensus       195 ~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~  274 (381)
T COG3391         195 VRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG  274 (381)
T ss_pred             eccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCC
Confidence            210    111223456789999999888777665  6899999998877665 22222 4667899999999888754 4


Q ss_pred             CeEEEEECCCceEee
Q 004207          704 NYISILDVETQVCRL  718 (768)
Q Consensus       704 g~I~IwD~~t~~~~~  718 (768)
                      +.+.+.|..+.....
T Consensus       275 ~~V~vid~~~~~v~~  289 (381)
T COG3391         275 GTVSVIDGATDRVVK  289 (381)
T ss_pred             CeEEEEeCCCCceee
Confidence            889999988765544

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.99  E-value=0.025  Score=51.54  Aligned_cols=101  Identities=20%  Similarity=0.222  Sum_probs=68.8

Q ss_pred             eEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 004207          558 VESCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (768)
Q Consensus       558 I~sl~fSp---dg-~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~  633 (768)
                      |+++++..   || +.|++|+.|..|+||+-+  +.+..+..+ +.|++++-... ..|+.+..+|+|-||+-.....  
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW--   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW--   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcceee--
Confidence            56666654   43 379999999999999854  667777654 46777776665 6799999999999998643221  


Q ss_pred             EEeecCCCCeEEEEEe---CCCCeEEEEEeCCCcEE
Q 004207          634 RTFTGHSTTVMSLDFH---PSKEDLLCSCDNNSEIR  666 (768)
Q Consensus       634 ~~~~~h~~~V~slafs---p~g~~lLaSgs~Dg~I~  666 (768)
                       ..+ .+..++++++.   -+|..-|++|-.+|.|-
T Consensus        76 -RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 -RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence             122 23346666653   34555677888888764

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.0035  Score=71.42  Aligned_cols=92  Identities=17%  Similarity=0.240  Sum_probs=76.1

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeE-EEEEeCCCCeEEEEEeCCCcEEEEECCCCeeE
Q 004207          598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA  676 (768)
Q Consensus       598 ~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~-slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i  676 (768)
                      ..|.-+.|+|.-.++|++..+|.|.++.+.-  ..+.++.-|...++ +++|.|||+ ++++|-.||+|++.|++++..+
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~--qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW--QRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEecc--ceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCce
Confidence            4578899999999999999999999988873  23566665666777 999999976 8889999999999999999888


Q ss_pred             EE--EecCCCeeEEEEec
Q 004207          677 GV--FKCQSGATQMRFQP  692 (768)
Q Consensus       677 ~~--~~~~~~i~sl~fsp  692 (768)
                      ..  +.....|.++.|.+
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            77  55567788888864

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.90  E-value=0.054  Score=64.02  Aligned_cols=139  Identities=9%  Similarity=0.023  Sum_probs=82.8

Q ss_pred             CCeEEEEEcCCCCEEEEEe------CCC--cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC---------
Q 004207          556 SKVESCHFSPDGKLLATGG------HDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---------  618 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs------~Dg--~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D---------  618 (768)
                      ..+.+.+++|||+.++..-      .|.  .|.+++.. +.......+  ...+.-.|+|+|..|++.+..         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            3578899999999877654      244  44444542 222222233  237889999998888777533         


Q ss_pred             ---CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEE---EECCCCeeEEE-----Ee-c-CCCe
Q 004207          619 ---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY---WSINNGSCAGV-----FK-C-QSGA  685 (768)
Q Consensus       619 ---gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~i---WDl~sg~~i~~-----~~-~-~~~i  685 (768)
                         +.|.+.+++.++...    ...+.|..+.|+|||..++++.  ++.|.+   -....|. ...     +. . ...+
T Consensus       427 ~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~  499 (591)
T PRK13616        427 PATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTA  499 (591)
T ss_pred             CCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-eeecccEEeecccCCcc
Confidence               223333443332211    2346799999999999888766  467776   3434443 111     11 1 2335


Q ss_pred             eEEEEecCCCEEEEEEcCCe
Q 004207          686 TQMRFQPRLGRILAAAIENY  705 (768)
Q Consensus       686 ~sl~fsp~~~~llags~Dg~  705 (768)
                      ..+.|..++. |+++..++.
T Consensus       500 ~~l~W~~~~~-L~V~~~~~~  518 (591)
T PRK13616        500 VSLDWRTGDS-LVVGRSDPE  518 (591)
T ss_pred             ccceEecCCE-EEEEecCCC
Confidence            7899999876 455554443

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.87  E-value=0.32  Score=50.46  Aligned_cols=138  Identities=12%  Similarity=0.042  Sum_probs=93.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEE-
Q 004207          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS-  645 (768)
Q Consensus       567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~s-  645 (768)
                      ..+++.|++.+.+..-|..+++....-.. ...|.+-+.- -|++++.|+..|.+++.+.+++.. +..+... +.|.+ 
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~-~w~f~~~-~~vk~~   98 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ-IWNFVIL-ETVKVR   98 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh-eeeeeeh-hhhccc
Confidence            45788999999999999999988865432 2334333322 367899999999999999999865 3222221 22322 


Q ss_pred             EEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCe-eEEEEecCCCEEEEEEcCCeEEEE
Q 004207          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRFQPRLGRILAAAIENYISIL  709 (768)
Q Consensus       646 lafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i-~sl~fsp~~~~llags~Dg~I~Iw  709 (768)
                      ....+++. ++..|+.|++.+..|.++..++...+..+.+ .+-++.|-...|+++...|.|.-.
T Consensus        99 a~~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlav  162 (354)
T KOG4649|consen   99 AQCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAV  162 (354)
T ss_pred             eEEcCCCc-eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEE
Confidence            22345554 7778999999999999999999888775553 345556644556666655554433

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.84  E-value=0.56  Score=49.43  Aligned_cols=169  Identities=12%  Similarity=0.033  Sum_probs=107.1

Q ss_pred             eEEEEecc-CCCCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc
Q 004207          588 TVKSTLEE-HTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (768)
Q Consensus       588 ~~~~tl~~-h~~~V~sl~fspdg~~LaTgs~Dg--tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~  664 (768)
                      +++.++.. .....-.+.|..++.++-+.+.-|  .|+.+|+.+++..........-.--.|+...  +.++.-.-.++.
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~  111 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGT  111 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSE
T ss_pred             EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCe
Confidence            34445532 223455778877777878877766  7999999998864443333333344555553  346656667899


Q ss_pred             EEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-----------------------
Q 004207          665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-----------------------  721 (768)
Q Consensus       665 I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-----------------------  721 (768)
                      ..+||..+.+.+..+...+.-..++  .++..|+.......|+++|..+.+....+.                       
T Consensus       112 ~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyA  189 (264)
T PF05096_consen  112 GFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYA  189 (264)
T ss_dssp             EEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEE
T ss_pred             EEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEE
Confidence            9999999999999998777667777  446678888888899999998775544433                       


Q ss_pred             ------eeEEeecCCCceEEec-------------cC---CCCeeEEEEeCCCCEEEEEEC
Q 004207          722 ------TLELWNMTENKTLTLS-------------AH---DKLVSSLAASTVNGMVASASH  760 (768)
Q Consensus       722 ------~I~iwd~~~~~~~~l~-------------~H---~~~I~sla~spdg~~LaSgs~  760 (768)
                            .|...|..++.+....             .+   .+..+.|||+|..+.|+..|.
T Consensus       190 NVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  190 NVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence                  5555677777776321             01   356889999988876655553

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.82  E-value=0.039  Score=66.44  Aligned_cols=142  Identities=13%  Similarity=0.119  Sum_probs=95.9

Q ss_pred             CCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCC-EEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCCeeEEEee-
Q 004207          566 DGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFT-  637 (768)
Q Consensus       566 dg~~LaSg-s~Dg~I~VWdl~t~~~~~tl~~h~~~-V~sl~fsp-----dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~-  637 (768)
                      |.++|+.- .....|+-.|++.|+++..+..|... |.+++-..     +..-.++|-.+..|..||.+-....+.... 
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            44444433 45678999999999999999887654 55443221     133466777888999999986432121111 


Q ss_pred             ---cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeE-EEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 004207          638 ---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKC-QSGATQMRFQPRLGRILAAAIENYISILDV  711 (768)
Q Consensus       638 ---~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i-~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~  711 (768)
                         .......|++-..+|  .||+|+.+|.||+||- .|..- ..+.+ +.+|..|..+.+|.++++.+. ..|.+++.
T Consensus       572 k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             cccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence               234567788777665  4778999999999994 33322 22333 688999999999988877664 56777765

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.79  E-value=0.12  Score=58.60  Aligned_cols=48  Identities=19%  Similarity=0.245  Sum_probs=37.1

Q ss_pred             cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (768)
Q Consensus       578 ~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~  627 (768)
                      .|.||+.. |+.+.++.-..+.|.++.|+.+. .|++...||++++||+.
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence            48999865 56666654444889999999864 56667799999999986

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.78  E-value=0.092  Score=60.93  Aligned_cols=148  Identities=10%  Similarity=0.080  Sum_probs=91.5

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCCC------CEE--EEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeec
Q 004207          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WIT--DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (768)
Q Consensus       567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~------~V~--sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~  638 (768)
                      +..++.++.++.|+.+|..+++.+..+.....      .+.  .+... ++..++.++.++.|+-+|.++++. +-.+..
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~-~W~~~~  138 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQ-VWKFGN  138 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCE-eeeecC
Confidence            44566677789999999999998877654322      010  11111 226788888999999999999885 322221


Q ss_pred             CCCC-----e-EEEEEeCCCCeEEEEEe---------CCCcEEEEECCCCeeEEEEecCCC-------------------
Q 004207          639 HSTT-----V-MSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKCQSG-------------------  684 (768)
Q Consensus       639 h~~~-----V-~slafsp~g~~lLaSgs---------~Dg~I~iWDl~sg~~i~~~~~~~~-------------------  684 (768)
                      ....     + .+..+..  . +++.++         .++.|..+|..+|+.+..+.....                   
T Consensus       139 ~~~~~~~~~i~ssP~v~~--~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g  215 (488)
T cd00216         139 NDQVPPGYTMTGAPTIVK--K-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG  215 (488)
T ss_pred             CCCcCcceEecCCCEEEC--C-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence            1110     1 1122222  2 333433         367899999999998887764211                   


Q ss_pred             --e-eEEEEecCCCEEEEEEcCC------------------eEEEEECCCceEeee
Q 004207          685 --A-TQMRFQPRLGRILAAAIEN------------------YISILDVETQVCRLK  719 (768)
Q Consensus       685 --i-~sl~fsp~~~~llags~Dg------------------~I~IwD~~t~~~~~~  719 (768)
                        + ...++.+.++.+++++.++                  .|.-+|..+++....
T Consensus       216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~  271 (488)
T cd00216         216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWF  271 (488)
T ss_pred             CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEE
Confidence              0 1345566667788887665                  678888888766544

The alignment model contains an 8-bladed beta-propeller.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.78  E-value=0.39  Score=52.19  Aligned_cols=153  Identities=14%  Similarity=0.062  Sum_probs=89.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc-----CCCCEEEEEEcCCCCEEEEEeC-----C----CcEEE
Q 004207          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSA-----D----RTVRV  623 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~-----h~~~V~sl~fspdg~~LaTgs~-----D----gtIrV  623 (768)
                      +.++..-..+..|+++..  -+.+++.+++..+..+..     .....+++...|+|.+.++...     .    ..-.|
T Consensus        68 ~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l  145 (307)
T COG3386          68 FSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL  145 (307)
T ss_pred             cccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence            444444445555665533  467777666555322211     1234678889999987776544     1    11244


Q ss_pred             EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC--C----eeEEEEe--cCCCeeEEEEecCCC
Q 004207          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--G----SCAGVFK--CQSGATQMRFQPRLG  695 (768)
Q Consensus       624 WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s--g----~~i~~~~--~~~~i~sl~fsp~~~  695 (768)
                      |-++.....++.+..+-..-+.|+|+|+++.++++=+..+.|.-|++..  +    .....+.  ..+..-.++...+|.
T Consensus       146 yr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~  225 (307)
T COG3386         146 YRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN  225 (307)
T ss_pred             EEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC
Confidence            5444222235566665666788999999997887766678888887752  1    1111111  134455677777776


Q ss_pred             EEEEEEcCC-eEEEEECC
Q 004207          696 RILAAAIEN-YISILDVE  712 (768)
Q Consensus       696 ~llags~Dg-~I~IwD~~  712 (768)
                      +.+++...+ .|.+|+..
T Consensus       226 lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         226 LWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             EEEecccCCceEEEECCC
Confidence            665444443 77777776

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.76  E-value=0.38  Score=54.59  Aligned_cols=151  Identities=10%  Similarity=0.020  Sum_probs=75.9

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl-------~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t  628 (768)
                      +.|.++.|+.+. .|++...||.+++||+.. +....+       ......|..+.+..+|-.++|  .++.|.+..--.
T Consensus        81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G-~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~  156 (410)
T PF04841_consen   81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFG-EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNID  156 (410)
T ss_pred             CCEEEEEECCCC-eEEEEEcCCEEEEEeCCC-ceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCcc
Confidence            789999998754 455666899999999863 331111       111122223333335533333  344443332211


Q ss_pred             CCeeEEEeecCCC---------CeEE-EEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEE
Q 004207          629 PDYSLRTFTGHST---------TVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL  698 (768)
Q Consensus       629 ~~~~~~~~~~h~~---------~V~s-lafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~ll  698 (768)
                      .....+.+..-..         .+.. ..++.+.. +.+....++.|.+.+-....   .+...+++..+++||++++++
T Consensus       157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~~---~i~~~~~i~~iavSpng~~iA  232 (410)
T PF04841_consen  157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSFK---QIDSDGPIIKIAVSPNGKFIA  232 (410)
T ss_pred             ccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEccccc---cccCCCCeEEEEECCCCCEEE
Confidence            1111111100000         0111 12233322 22233334455544332211   133346899999999999998


Q ss_pred             EEEcCCeEEEEECCCc
Q 004207          699 AAAIENYISILDVETQ  714 (768)
Q Consensus       699 ags~Dg~I~IwD~~t~  714 (768)
                      .-..+|.+.|....-.
T Consensus       233 l~t~~g~l~v~ssDf~  248 (410)
T PF04841_consen  233 LFTDSGNLWVVSSDFS  248 (410)
T ss_pred             EEECCCCEEEEECccc
Confidence            8888899888765443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.59  E-value=0.069  Score=63.13  Aligned_cols=150  Identities=13%  Similarity=0.155  Sum_probs=85.1

Q ss_pred             CCEEEEEEcCCCCEEEEEe------CCC--cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeC--------
Q 004207          598 QWITDVRFSPSLSRLATSS------ADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--------  661 (768)
Q Consensus       598 ~~V~sl~fspdg~~LaTgs------~Dg--tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~--------  661 (768)
                      ..+.+.+++|+++.++...      .|.  .|.+++..  ........+  ...++-.|+|+|+.+.++...        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence            4678899999999877665      244  45555543  222222333  248889999998766554322        


Q ss_pred             ---CCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEE---EECCCceEeeecceeEEeecCCCceEE
Q 004207          662 ---NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI---LDVETQVCRLKLQTLELWNMTENKTLT  735 (768)
Q Consensus       662 ---Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~I---wD~~t~~~~~~~~~I~iwd~~~~~~~~  735 (768)
                         .+.+.+.+++.+....  .....|..+.|+|+|.+++... ++.|++   -....+..  .     +     .....
T Consensus       426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~--~-----l-----~~~~~  490 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQY--A-----L-----TNPRE  490 (591)
T ss_pred             cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCce--e-----e-----cccEE
Confidence               2334444554443332  3346799999999999988766 466665   33222220  0     0     01111


Q ss_pred             ec-cCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          736 LS-AHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       736 l~-~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      +. .-...+.++.|..++.++ ++..++...+|
T Consensus       491 l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~  522 (591)
T PRK13616        491 VGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVW  522 (591)
T ss_pred             eecccCCccccceEecCCEEE-EEecCCCCceE
Confidence            21 223335788899888754 55544444444

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.57  E-value=0.023  Score=68.45  Aligned_cols=101  Identities=20%  Similarity=0.237  Sum_probs=72.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCC-eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeE
Q 004207          566 DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM  644 (768)
Q Consensus       566 dg~~LaSgs~Dg~I~VWdl~t~-~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~  644 (768)
                      -+.+++.|+..|.|...|+... .....-..-.++|++++|+.+|.+++.|-.+|.|.+||+..++. ++.+..|..+++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~-l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI-LKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc-eeeeeecCCccc
Confidence            4557888988899999887652 21122233457899999999999999999999999999998664 666666666655


Q ss_pred             EEE---EeCCCCeEEEEEeCCCcEEEEEC
Q 004207          645 SLD---FHPSKEDLLCSCDNNSEIRYWSI  670 (768)
Q Consensus       645 sla---fsp~g~~lLaSgs~Dg~I~iWDl  670 (768)
                      ++-   +..++. .+.+++..|.  +|.+
T Consensus       177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence            554   444444 5557776665  5554

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.52  E-value=0.32  Score=51.15  Aligned_cols=144  Identities=13%  Similarity=0.107  Sum_probs=89.7

Q ss_pred             eEEEEEcCCCC-EEEEEeCCCc-EEEEECCCCeEEEEeccCCCC--EEEEEEcCCCCEEEEEeCC-----CcEEEEECCC
Q 004207          558 VESCHFSPDGK-LLATGGHDKK-AVLWCTESFTVKSTLEEHTQW--ITDVRFSPSLSRLATSSAD-----RTVRVWDTEN  628 (768)
Q Consensus       558 I~sl~fSpdg~-~LaSgs~Dg~-I~VWdl~t~~~~~tl~~h~~~--V~sl~fspdg~~LaTgs~D-----gtIrVWDl~t  628 (768)
                      ...|+|+|... -++.+-.-|+ ..|+|..+.....++...++.  .-.-.|||||.+|+..-.|     |.|-|||.+.
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence            34577777443 4555555554 567888776655554322211  1123599999999876554     6899999997


Q ss_pred             CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeC-----------------CCcEEEEECCCCeeEEEEec-----CCCee
Q 004207          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------------NSEIRYWSINNGSCAGVFKC-----QSGAT  686 (768)
Q Consensus       629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~-----------------Dg~I~iWDl~sg~~i~~~~~-----~~~i~  686 (768)
                      +-..+-.+..|.-....+.|.+||+.++++.+.                 .-.+.+.|..+|..+.....     .-.+.
T Consensus       150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR  229 (366)
T COG3490         150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR  229 (366)
T ss_pred             ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence            666677788888888899999999877655430                 11344445455555443332     23466


Q ss_pred             EEEEecCCCEEEEEE
Q 004207          687 QMRFQPRLGRILAAA  701 (768)
Q Consensus       687 sl~fsp~~~~llags  701 (768)
                      .++..+++..++.+-
T Consensus       230 Hld~g~dgtvwfgcQ  244 (366)
T COG3490         230 HLDIGRDGTVWFGCQ  244 (366)
T ss_pred             eeeeCCCCcEEEEEE
Confidence            677777765544443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.48  E-value=0.086  Score=57.25  Aligned_cols=144  Identities=13%  Similarity=0.184  Sum_probs=94.0

Q ss_pred             CeEEEEEcCCCCEEEEEeC-----C----CcEEEEECC-CCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEE
Q 004207          557 KVESCHFSPDGKLLATGGH-----D----KKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWD  625 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~-----D----g~I~VWdl~-t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D-gtIrVWD  625 (768)
                      ..+.+.+.|+|.+.++...     .    ..-.||.+. .+..+..+..+-..-+.|+||||++.|+.+... +.|+.|+
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~  191 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD  191 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence            4566778888887665443     0    112455555 566666666655666889999999888777654 7888888


Q ss_pred             CCC--C----CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-CcEEEEECCCCeeEEEEecC-CCeeEEEEe-cCCCE
Q 004207          626 TEN--P----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKCQ-SGATQMRFQ-PRLGR  696 (768)
Q Consensus       626 l~t--~----~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-g~I~iWDl~sg~~i~~~~~~-~~i~sl~fs-p~~~~  696 (768)
                      +..  +    ......+....+..-.++...+|...+ ++..+ +.|.+|+.. ++.+..+... ..+++++|- ++.+.
T Consensus       192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~-~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~  269 (307)
T COG3386         192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWV-AAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNT  269 (307)
T ss_pred             cCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEE-ecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCE
Confidence            762  1    111122223456667788888876443 33333 389999988 9999998876 678888884 45555


Q ss_pred             EEEEEc
Q 004207          697 ILAAAI  702 (768)
Q Consensus       697 llags~  702 (768)
                      |++.+.
T Consensus       270 L~iTs~  275 (307)
T COG3386         270 LYITSA  275 (307)
T ss_pred             EEEEec
Confidence            555554

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.44  E-value=0.12  Score=62.30  Aligned_cols=127  Identities=8%  Similarity=0.077  Sum_probs=85.2

Q ss_pred             eCCCcEEEEECCCCCeeEEEeecCCCC-eEEEEEeC-----CCCeEEEEEeCCCcEEEEECCCCe--eEE----EEecCC
Q 004207          616 SADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHP-----SKEDLLCSCDNNSEIRYWSINNGS--CAG----VFKCQS  683 (768)
Q Consensus       616 s~DgtIrVWDl~t~~~~~~~~~~h~~~-V~slafsp-----~g~~lLaSgs~Dg~I~iWDl~sg~--~i~----~~~~~~  683 (768)
                      .....|+-.|++.|+. +..+..|... |..++-..     +....| .|-.+..|+.||.|-..  ++.    .+....
T Consensus       501 ~~~~~ly~mDLe~GKV-V~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~  578 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKV-VEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN  578 (794)
T ss_pred             CCCCceEEEecCCCcE-EEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeeccccccccCC
Confidence            3457899999999886 7777777643 55543221     112233 56668899999998632  332    122344


Q ss_pred             CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207          684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD  761 (768)
Q Consensus       684 ~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D  761 (768)
                      ...|++-+.+ ++|++|+.+|.|++||--...                ....+.+-..+|.+|+.+.||++|++.+..
T Consensus       579 ~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~----------------AKT~lp~lG~pI~~iDvt~DGkwilaTc~t  639 (794)
T PF08553_consen  579 NFSCFATTED-GYIAVGSNKGDIRLYDRLGKR----------------AKTALPGLGDPIIGIDVTADGKWILATCKT  639 (794)
T ss_pred             CceEEEecCC-ceEEEEeCCCcEEeecccchh----------------hhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence            5677776665 789999999999999842211                011344667899999999999998877654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.38  E-value=0.0034  Score=63.64  Aligned_cols=138  Identities=14%  Similarity=0.084  Sum_probs=78.1

Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC-eeEEEEe-cCCCeeE-
Q 004207          611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK-CQSGATQ-  687 (768)
Q Consensus       611 ~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg-~~i~~~~-~~~~i~s-  687 (768)
                      .|...+.||.|+-++++..+...+...-|.....-+.++    .-+++|+.+|.|.+|...-. .....+. ....|.+ 
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~----~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~  107 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTAS----AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG  107 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcceeecccC----ceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence            344456788888888875443333332232222222222    23557888999999987621 1111111 1122222 


Q ss_pred             EEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCC-CCeeEEEEeCCCCEEEEE--ECCCcE
Q 004207          688 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASA--SHDKCV  764 (768)
Q Consensus       688 l~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~-~~I~sla~spdg~~LaSg--s~DG~V  764 (768)
                      +..-.++.+..+++.++.|+.|++.-.+....                ...|. .++..+..+..+.+|+++  |.|..+
T Consensus       108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~----------------~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~  171 (238)
T KOG2444|consen  108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGY----------------VGQHNFESGEELIVVGSDEFLKIADTSHDRVL  171 (238)
T ss_pred             cccccccceeEEeccCCceeeeccccCceeee----------------eccccCCCcceeEEecCCceEEeeccccchhh
Confidence            22233444677888899888887765443321                12444 456666666677788888  888888


Q ss_pred             EEeC
Q 004207          765 KIWK  768 (768)
Q Consensus       765 ~IWD  768 (768)
                      +.|+
T Consensus       172 k~W~  175 (238)
T KOG2444|consen  172 KKWN  175 (238)
T ss_pred             hhcc
Confidence            8886

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.35  E-value=1.3  Score=49.73  Aligned_cols=198  Identities=15%  Similarity=0.152  Sum_probs=94.0

Q ss_pred             EEEcCCCCEEEEEeC------CCcEEEEECCCCeEEEEeccCC---CCEEEEEEcCCCCEEEEEeC--------------
Q 004207          561 CHFSPDGKLLATGGH------DKKAVLWCTESFTVKSTLEEHT---QWITDVRFSPSLSRLATSSA--------------  617 (768)
Q Consensus       561 l~fSpdg~~LaSgs~------Dg~I~VWdl~t~~~~~tl~~h~---~~V~sl~fspdg~~LaTgs~--------------  617 (768)
                      +..-|+|+.++++-.      -|-+.++|-++.++...++...   ..-+++.|.|..+.++|..+              
T Consensus       135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d  214 (461)
T PF05694_consen  135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPED  214 (461)
T ss_dssp             EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTT
T ss_pred             eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhH
Confidence            444578888887622      2468899999999888775432   34567888998888888765              


Q ss_pred             ------CCcEEEEECCCCCeeEEEeecCC--CCeEEEEEe--CCCCeEEEEEeCCCcEEEEEC-CCCe----eEEEEec-
Q 004207          618 ------DRTVRVWDTENPDYSLRTFTGHS--TTVMSLDFH--PSKEDLLCSCDNNSEIRYWSI-NNGS----CAGVFKC-  681 (768)
Q Consensus       618 ------DgtIrVWDl~t~~~~~~~~~~h~--~~V~slafs--p~g~~lLaSgs~Dg~I~iWDl-~sg~----~i~~~~~-  681 (768)
                            ..+|++||+.+.+. ++++.-..  ..+..|.|.  |+...-|+.|.-..+|..|-- +.++    .+..+.. 
T Consensus       215 ~~~~~yG~~l~vWD~~~r~~-~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~  293 (461)
T PF05694_consen  215 LEAGKYGHSLHVWDWSTRKL-LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK  293 (461)
T ss_dssp             HHHH-S--EEEEEETTTTEE-EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred             hhcccccCeEEEEECCCCcE-eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence                  35899999998765 55544322  235566664  445555666655566665543 3332    1111211 


Q ss_pred             -----------------CCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecC-CCceEEe--ccCC
Q 004207          682 -----------------QSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQTLELWNMT-ENKTLTL--SAHD  740 (768)
Q Consensus       682 -----------------~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~-~~~~~~l--~~H~  740 (768)
                                       ..-|+.+.++.+.++|++++ .+|.|+.||+...........|.+=..- .+.....  ..-.
T Consensus       294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~  373 (461)
T PF05694_consen  294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLR  373 (461)
T ss_dssp             E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------
T ss_pred             ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccC
Confidence                             13378899999999988888 5899999999875443333333321110 0000000  0112


Q ss_pred             CCeeEEEEeCCCCEEEEEE
Q 004207          741 KLVSSLAASTVNGMVASAS  759 (768)
Q Consensus       741 ~~I~sla~spdg~~LaSgs  759 (768)
                      +...-|..|-||+.|+...
T Consensus       374 GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  374 GGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             S----EEE-TTSSEEEEE-
T ss_pred             CCCCeEEEccCCeEEEEEe
Confidence            2345677788887766553

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PRK10115 protease 2; Provisional

Probab=96.22  E-value=1.3  Score=53.74  Aligned_cols=112  Identities=13%  Similarity=0.074  Sum_probs=67.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEE
Q 004207          557 KVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWD  625 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~D-----g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D------gtIrVWD  625 (768)
                      .+..+.|+|||++|+.+...     ..|+|.|+.+++.+........  ..++|.+|++.|+.+..+      ..|+.|+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            36778999999988865332     2588889988864433222222  469999998876665443      3678888


Q ss_pred             CCCCC-eeEEEeecCCCCeE-EEEEeCCCCeEEEEEe--CCCcEEEEEC
Q 004207          626 TENPD-YSLRTFTGHSTTVM-SLDFHPSKEDLLCSCD--NNSEIRYWSI  670 (768)
Q Consensus       626 l~t~~-~~~~~~~~h~~~V~-slafsp~g~~lLaSgs--~Dg~I~iWDl  670 (768)
                      +.++. .....+........ .+..+.++..+++.+.  .++.+.+|+.
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            88762 11233333223333 2233337776665443  3467888885

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.19  E-value=1.5  Score=51.43  Aligned_cols=152  Identities=13%  Similarity=0.081  Sum_probs=89.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCC-EEEEEEcC--CCCEEEEEe------CCCcEEEEECCCCCeeEEEee
Q 004207          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSP--SLSRLATSS------ADRTVRVWDTENPDYSLRTFT  637 (768)
Q Consensus       567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~-V~sl~fsp--dg~~LaTgs------~DgtIrVWDl~t~~~~~~~~~  637 (768)
                      +..++.++.|+.|..+|.++++.+......... -..+.-+|  .+..++++.      .+|.|+.+|.++++..=....
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence            346777888999999999999998766421100 01111122  123455543      268899999998875221111


Q ss_pred             cC------------------------------CCCe-EEEEEeCCCCeEEEEEeC----CC-----------cEEEEECC
Q 004207          638 GH------------------------------STTV-MSLDFHPSKEDLLCSCDN----NS-----------EIRYWSIN  671 (768)
Q Consensus       638 ~h------------------------------~~~V-~slafsp~g~~lLaSgs~----Dg-----------~I~iWDl~  671 (768)
                      ..                              ...+ ..+++.+..+.+++..+.    ++           .|.-.|++
T Consensus       200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~  279 (527)
T TIGR03075       200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD  279 (527)
T ss_pred             cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence            00                              0111 134566654534432221    12           57778999


Q ss_pred             CCeeEEEEec-CCC---------eeEEEEecCCC---EEEEEEcCCeEEEEECCCceEee
Q 004207          672 NGSCAGVFKC-QSG---------ATQMRFQPRLG---RILAAAIENYISILDVETQVCRL  718 (768)
Q Consensus       672 sg~~i~~~~~-~~~---------i~sl~fsp~~~---~llags~Dg~I~IwD~~t~~~~~  718 (768)
                      +|+....+.. ++.         ..-+.+..+++   .++.+..+|.++++|.++++.+.
T Consensus       280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence            9998877764 221         12223334555   56688899999999999998753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.14  E-value=0.6  Score=54.75  Aligned_cols=111  Identities=5%  Similarity=-0.068  Sum_probs=67.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCC-CCEE---E-------EEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 004207          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWIT---D-------VRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (768)
Q Consensus       567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~-~~V~---s-------l~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~  635 (768)
                      +..|++++.++.|+-+|..+++.+..+.... ..+.   +       +++.  +..++.++.|+.|.-.|.++++.+-..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4567777778899999999999988764321 1111   1       1221  346778889999999999998863222


Q ss_pred             ee-cCC--CCeEE-EEEeCCCCeEEEEEe-----CCCcEEEEECCCCeeEEEEec
Q 004207          636 FT-GHS--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKC  681 (768)
Q Consensus       636 ~~-~h~--~~V~s-lafsp~g~~lLaSgs-----~Dg~I~iWDl~sg~~i~~~~~  681 (768)
                      -. .+.  ..+++ ..+. + ..+++..+     .+|.|..+|.++|+.+..+..
T Consensus       147 ~~~~~~~~~~~tssP~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             ccccccccccccCCcEEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence            11 111  11111 1111 2 33443222     268999999999998876553

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.06  E-value=1.2  Score=49.58  Aligned_cols=142  Identities=14%  Similarity=0.087  Sum_probs=78.8

Q ss_pred             EEEcCCCCEEE-EEeCCCc--EEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee
Q 004207          561 CHFSPDGKLLA-TGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (768)
Q Consensus       561 l~fSpdg~~La-Sgs~Dg~--I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~  637 (768)
                      =+|.+||+.|+ ++..||.  +.+.|+.+++......+.........++++.+.++-...+..|+..|+++.+. ...+.
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~  119 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYE  119 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEE
Confidence            35778897655 4444554  66668888887755443323233566788888887776777899999998765 34444


Q ss_pred             cCCCCeEEEEEe--CCCCeEEEEEe---C-------------------CCcEEEEECCCCeeEEEEecCCCeeEEEEecC
Q 004207          638 GHSTTVMSLDFH--PSKEDLLCSCD---N-------------------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPR  693 (768)
Q Consensus       638 ~h~~~V~slafs--p~g~~lLaSgs---~-------------------Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~  693 (768)
                      .....+-...|.  .++. .++.+-   .                   .+.|...|+.+|+....+....-+..+.|+|.
T Consensus       120 ~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~  198 (386)
T PF14583_consen  120 VPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT  198 (386)
T ss_dssp             --TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred             CCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence            445555445564  3333 332221   1                   13466678888888777776677788999998


Q ss_pred             CCEEEEEEcCC
Q 004207          694 LGRILAAAIEN  704 (768)
Q Consensus       694 ~~~llags~Dg  704 (768)
                      ...+++-|.+|
T Consensus       199 dp~li~fCHEG  209 (386)
T PF14583_consen  199 DPTLIMFCHEG  209 (386)
T ss_dssp             EEEEEEEEE-S
T ss_pred             CCCEEEEeccC
Confidence            77777766543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.03  E-value=0.26  Score=52.13  Aligned_cols=137  Identities=16%  Similarity=0.164  Sum_probs=80.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE----------
Q 004207          608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG----------  677 (768)
Q Consensus       608 dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~----------  677 (768)
                      .++.|+.|+.+| |.++++...........  ...|..+...++-+.+++.+  |+.|+++++..-....          
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc--CCccEEEEchhhcccccccccccccc
Confidence            467899999888 99999943333233332  33499999999877666554  5999999987643333          


Q ss_pred             -----EEecCCCeeEEE--EecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeC
Q 004207          678 -----VFKCQSGATQMR--FQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAST  750 (768)
Q Consensus       678 -----~~~~~~~i~sl~--fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~sp  750 (768)
                           .+....++..++  -...+...+++.....|.+|.+........            ....-..-...+.+++|. 
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~------------~~~ke~~lp~~~~~i~~~-  147 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS------------KLLKEISLPDPPSSIAFL-  147 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc------------ceeEEEEcCCCcEEEEEe-
Confidence                 111122333333  223445566666666888877655311100            011111223567888888 


Q ss_pred             CCCEEEEEECCCc
Q 004207          751 VNGMVASASHDKC  763 (768)
Q Consensus       751 dg~~LaSgs~DG~  763 (768)
                       ++.|+.|..++.
T Consensus       148 -~~~i~v~~~~~f  159 (275)
T PF00780_consen  148 -GNKICVGTSKGF  159 (275)
T ss_pred             -CCEEEEEeCCce
Confidence             566777766554

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.01  E-value=0.073  Score=64.55  Aligned_cols=140  Identities=11%  Similarity=0.064  Sum_probs=90.3

Q ss_pred             CeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEE-----------EeccCCCCEEEEEEcCC-CCEEEEEeCCCcEE
Q 004207          557 KVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKS-----------TLEEHTQWITDVRFSPS-LSRLATSSADRTVR  622 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSg--s~Dg~I~VWdl~t~~~~~-----------tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIr  622 (768)
                      +|..+.+.+|+...++.  +.+-.|.+||+++.....           +.......+.++.|+|. ....+.+..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            45556666677754443  334478889987643221           11122234668889986 33467778899999


Q ss_pred             EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-----CCCeeEEEEecCCCEE
Q 004207          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGRI  697 (768)
Q Consensus       623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-----~~~i~sl~fsp~~~~l  697 (768)
                      |..+......+..+. ....++|++|+|.|..++ .|...|++.-|... .++...+.+     ...|.+|+|.....++
T Consensus       182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~-iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl  258 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLF-IGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL  258 (1405)
T ss_pred             hhhhhhhhhhhcccC-cccceeeEEeccccceee-EecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence            988765443333332 456789999999988555 78889999888654 344444432     3568999998875555


Q ss_pred             EE
Q 004207          698 LA  699 (768)
Q Consensus       698 la  699 (768)
                      ++
T Consensus       259 vv  260 (1405)
T KOG3630|consen  259 VV  260 (1405)
T ss_pred             EE
Confidence            44

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.82  E-value=0.24  Score=55.97  Aligned_cols=130  Identities=9%  Similarity=0.090  Sum_probs=87.0

Q ss_pred             EEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCe-------EEEEEeCCCcEEEEECCCCe--eEEEEe--
Q 004207          612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-------LLCSCDNNSEIRYWSINNGS--CAGVFK--  680 (768)
Q Consensus       612 LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~-------lLaSgs~Dg~I~iWDl~sg~--~i~~~~--  680 (768)
                      |.++..-..|+--|++.|+. +..+.-|.. |.-+.+.|+.+.       -| .|-.|..|+-||.|-..  .+....  
T Consensus       349 l~~~~~~~~l~klDIE~GKI-VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~~kl~~~q~k  425 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKI-VEEWKFEDD-INMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGKNKLAVVQSK  425 (644)
T ss_pred             eeCCCCcCcceeeeccccee-eeEeeccCC-cceeeccCCcchhcccccccE-EeecCCceEEecccccCcceeeeeecc
Confidence            34455556788889998886 777776665 777778776431       22 46668899999988422  222222  


Q ss_pred             ---cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEE
Q 004207          681 ---CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS  757 (768)
Q Consensus       681 ---~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaS  757 (768)
                         ......|.+-.. .++|++|+.+|.|++||--....                ...+.+-..+|..|..+.+|++|++
T Consensus       426 qy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdri~~~A----------------KTAlPgLG~~I~hVdvtadGKwil~  488 (644)
T KOG2395|consen  426 QYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDRIGRRA----------------KTALPGLGDAIKHVDVTADGKWILA  488 (644)
T ss_pred             ccccccccceeeecC-CceEEEeecCCcEEeehhhhhhh----------------hhcccccCCceeeEEeeccCcEEEE
Confidence               233455555555 47899999999999998622111                1135577788999999999998877


Q ss_pred             EECC
Q 004207          758 ASHD  761 (768)
Q Consensus       758 gs~D  761 (768)
                      .+..
T Consensus       489 Tc~t  492 (644)
T KOG2395|consen  489 TCKT  492 (644)
T ss_pred             eccc
Confidence            6654

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.77  E-value=0.02  Score=58.25  Aligned_cols=134  Identities=11%  Similarity=0.043  Sum_probs=72.5

Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEE
Q 004207          570 LATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF  648 (768)
Q Consensus       570 LaSgs~Dg~I~VWdl~t~~~~~tl-~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slaf  648 (768)
                      |..-+.|+.|.-+++..-+....- ..|...-..+.+   +..|++|+.+|.|.+|...-.......+..-...|.++--
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~---~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA---SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcceeeccc---CceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            334456777777766542221110 112111111222   4679999999999999987332212222222233433332


Q ss_pred             eCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207          649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       649 sp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                      .-+...+.|++..||.|+.|++.-.+.+.....+..       -.+..+++.+.+..|.+|++..
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-------~~~e~~ivv~sd~~i~~a~~S~  167 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-------ESGEELIVVGSDEFLKIADTSH  167 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCceeeeeccccC-------CCcceeEEecCCceEEeecccc
Confidence            222233888999999999999987766655443321       2234455555556666665544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.72  E-value=0.5  Score=54.30  Aligned_cols=149  Identities=16%  Similarity=0.139  Sum_probs=89.5

Q ss_pred             CCCeEEEEEcCCCCEEE-EEe--CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECC
Q 004207          555 TSKVESCHFSPDGKLLA-TGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LSRLATSSADRTVRVWDTE  627 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~La-Sgs--~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd----g~~LaTgs~DgtIrVWDl~  627 (768)
                      -.+|..++|. ||+.++ +.-  ..|.+++=|   .+.+.    .-..|..+.|.|-    ...|+..-..+.|.||.+-
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            4578899997 666543 432  334444332   12333    3345899999984    3356666788899999875


Q ss_pred             -----CCCeeEEEeecCC---CC--eEEEEEeCCCCeEEEEEeCCCcEEEEECCC--CeeEEEEecCCCeeEEEEecCCC
Q 004207          628 -----NPDYSLRTFTGHS---TT--VMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFKCQSGATQMRFQPRLG  695 (768)
Q Consensus       628 -----t~~~~~~~~~~h~---~~--V~slafsp~g~~lLaSgs~Dg~I~iWDl~s--g~~i~~~~~~~~i~sl~fsp~~~  695 (768)
                           ..+. +....++-   -+  -..+.|||... +|++-.....-.+++++.  ......++..+.|.|.+|..||.
T Consensus        91 ~s~~e~~K~-l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~  168 (671)
T PF15390_consen   91 PSTTERNKL-LMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQ  168 (671)
T ss_pred             cCccccccc-eeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCC
Confidence                 2222 11111111   11  24577999976 554444333334566653  34455667788899999999999


Q ss_pred             EEEEEEc-CCeEEEEECCC
Q 004207          696 RILAAAI-ENYISILDVET  713 (768)
Q Consensus       696 ~llags~-Dg~I~IwD~~t  713 (768)
                      +|+++-. .=.-+|||-..
T Consensus       169 RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  169 RLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EEEEEeCCeEEEEEecCch
Confidence            9776543 34457787544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.70  E-value=0.21  Score=57.20  Aligned_cols=137  Identities=10%  Similarity=0.082  Sum_probs=85.5

Q ss_pred             CCeEEEEEcCC----CCEEEEEeCCCcEEEEECC-----CCeEEEEeccC-C--CC--EEEEEEcCCCCEEEEEeCCCcE
Q 004207          556 SKVESCHFSPD----GKLLATGGHDKKAVLWCTE-----SFTVKSTLEEH-T--QW--ITDVRFSPSLSRLATSSADRTV  621 (768)
Q Consensus       556 ~~I~sl~fSpd----g~~LaSgs~Dg~I~VWdl~-----t~~~~~tl~~h-~--~~--V~sl~fspdg~~LaTgs~DgtI  621 (768)
                      ..|..++|.|-    ...|+..-..+.|.||-+.     ..+.+..-..+ .  -+  -..+.|+|....|++-.....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            44899999994    3245555677899999765     22322221111 1  11  2356799998888777666665


Q ss_pred             EEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe-----eEEEEecCCCeeEEEEec
Q 004207          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----CAGVFKCQSGATQMRFQP  692 (768)
Q Consensus       622 rVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~-----~i~~~~~~~~i~sl~fsp  692 (768)
                      .++++......+..-....+.|.|.+|..||.+++++.+..=.-++||-....     .--+|...+.|.++.-.-
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~  212 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATV  212 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEec
Confidence            67777654443444345668899999999999988877766667889864322     112334445555554443

>PHA02713 hypothetical protein; Provisional

Probab=95.67  E-value=0.39  Score=56.70  Aligned_cols=64  Identities=11%  Similarity=0.153  Sum_probs=35.8

Q ss_pred             CCCEEEEEeCC------CcEEEEECCCCeEE--EEeccCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCCe
Q 004207          566 DGKLLATGGHD------KKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENPDY  631 (768)
Q Consensus       566 dg~~LaSgs~D------g~I~VWdl~t~~~~--~tl~~h~~~V~sl~fspdg~~LaTgs~Dg-----tIrVWDl~t~~~  631 (768)
                      ++.++++||.+      ..+..||..+..-.  ..+.........+.+  ++++.+.|+.++     +|..||..+...
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W  379 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKW  379 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence            67777777754      34778887765322  111111111222222  467777887764     488899887543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.66  E-value=0.13  Score=57.88  Aligned_cols=143  Identities=16%  Similarity=0.197  Sum_probs=96.9

Q ss_pred             cCCCCEE-EEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC-------EEEEEeCCCcEEEEECCCCCe-eEE
Q 004207          564 SPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-------RLATSSADRTVRVWDTENPDY-SLR  634 (768)
Q Consensus       564 Spdg~~L-aSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~-------~LaTgs~DgtIrVWDl~t~~~-~~~  634 (768)
                      ..+.++| .++..-..|+-.|++.|+++..+..|.. |+-+.+.|+.+       .-+.|-.|..|.-||.+-... .+.
T Consensus       342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~  420 (644)
T KOG2395|consen  342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA  420 (644)
T ss_pred             ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence            3355544 4555666788899999999999988776 88888888643       234566788899999874332 233


Q ss_pred             EeecC----CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE-EEec-CCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207          635 TFTGH----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKC-QSGATQMRFQPRLGRILAAAIENYISI  708 (768)
Q Consensus       635 ~~~~h----~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~-~~~~-~~~i~sl~fsp~~~~llags~Dg~I~I  708 (768)
                      ...+|    .....|.+-..+|  .+++|+.+|.|++||- .+..-+ .+.+ ...|..|..+.+|.+|++.+ +.++.+
T Consensus       421 ~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlL  496 (644)
T KOG2395|consen  421 VVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLL  496 (644)
T ss_pred             eeeccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEE
Confidence            33332    2345566655554  5778999999999996 343322 2332 67799999999988776655 566666


Q ss_pred             EEC
Q 004207          709 LDV  711 (768)
Q Consensus       709 wD~  711 (768)
                      .|+
T Consensus       497 i~t  499 (644)
T KOG2395|consen  497 IDT  499 (644)
T ss_pred             EEE
Confidence            665

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.65  E-value=1.2  Score=48.72  Aligned_cols=154  Identities=8%  Similarity=0.046  Sum_probs=95.2

Q ss_pred             CEEEEEeCCCcEEEEECC-CCeEEEEe----ccCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE-EEeec--
Q 004207          568 KLLATGGHDKKAVLWCTE-SFTVKSTL----EEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTG--  638 (768)
Q Consensus       568 ~~LaSgs~Dg~I~VWdl~-t~~~~~tl----~~h~~~V~-sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~-~~~~~--  638 (768)
                      +-|.+-|.||++.-..++ .|+...+.    ..-..++. .-++...+..++-.+.+|.|+--|+....... ..+.-  
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t  227 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT  227 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence            457778889999888877 45544221    11222222 33444455556667899999998887654221 12211  


Q ss_pred             --------CCCCeEEEEEeCCCCeEEEEEeC--C-------CcEEEEECCCCeeEEEEecCCCeeEEEEecCCCE-EEEE
Q 004207          639 --------HSTTVMSLDFHPSKEDLLCSCDN--N-------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR-ILAA  700 (768)
Q Consensus       639 --------h~~~V~slafsp~g~~lLaSgs~--D-------g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~-llag  700 (768)
                              -.+...-+++++..+++++.-..  +       ..|.+||+.+++.+..+.....+.+|.++.+..- |++.
T Consensus       228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~  307 (342)
T PF06433_consen  228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYAL  307 (342)
T ss_dssp             HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEE
T ss_pred             ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEE
Confidence                    01233447788766666654321  1       2588889999999999998888889999987764 4454


Q ss_pred             E-cCCeEEEEECCCceEeeecc
Q 004207          701 A-IENYISILDVETQVCRLKLQ  721 (768)
Q Consensus       701 s-~Dg~I~IwD~~t~~~~~~~~  721 (768)
                      + .++.|.+||..+++....+.
T Consensus       308 ~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  308 SAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             ETTTTEEEEEETTT--EEEEE-
T ss_pred             cCCCCeEEEEeCcCCcEEeehh
Confidence            4 47899999999987765543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.62  E-value=0.56  Score=49.74  Aligned_cols=118  Identities=14%  Similarity=0.212  Sum_probs=80.2

Q ss_pred             ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee-cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC
Q 004207          594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (768)
Q Consensus       594 ~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~-~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s  672 (768)
                      .+-...|.++.|+|+.+.|++......-.||-...|.. ++++. ..-.....|.+..++. ++++--.+..+.++.+..
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdl-irtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL-IRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDA  159 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCce-EEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcC
Confidence            34445699999999999999888888777776666664 44332 1123355677776644 444666788888887765


Q ss_pred             CeeEEEE-----e-----c-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207          673 GSCAGVF-----K-----C-QSGATQMRFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       673 g~~i~~~-----~-----~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                      ...+..+     .     . ..+...++|+|....++++-.-+-+.||.+..
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~  211 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ  211 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence            5322211     1     1 34577899999999999988888788777653

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.58  E-value=0.95  Score=54.75  Aligned_cols=82  Identities=26%  Similarity=0.329  Sum_probs=56.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----------CCeE--E-EEe--------ccCCCCEEEEEEcCC---
Q 004207          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----------SFTV--K-STL--------EEHTQWITDVRFSPS---  608 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~----------t~~~--~-~tl--------~~h~~~V~sl~fspd---  608 (768)
                      .-.-.|..|.++++|.+|+..|..|.+.+. +.          .++.  . +++        ..+...|..+.|+|.   
T Consensus        82 ~~~f~v~~i~~n~~g~~lal~G~~~v~V~~-LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   82 PPLFEVHQISLNPTGSLLALVGPRGVVVLE-LPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES  160 (717)
T ss_pred             CCceeEEEEEECCCCCEEEEEcCCcEEEEE-eccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence            334468999999999999999887654442 21          1111  1 111        124457899999996   


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCeeEEE
Q 004207          609 LSRLATSSADRTVRVWDTENPDYSLRT  635 (768)
Q Consensus       609 g~~LaTgs~DgtIrVWDl~t~~~~~~~  635 (768)
                      +.+|++-..|++||+||+.....+..+
T Consensus       161 ~~~l~vLtsdn~lR~y~~~~~~~p~~v  187 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDISDPQHPWQV  187 (717)
T ss_pred             CCeEEEEecCCEEEEEecCCCCCCeEE
Confidence            578999999999999999865544433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.57  E-value=0.42  Score=56.42  Aligned_cols=125  Identities=11%  Similarity=0.130  Sum_probs=80.7

Q ss_pred             ceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCCEEEEEEc--CCCCEEEEEeCCC
Q 004207          543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFS--PSLSRLATSSADR  619 (768)
Q Consensus       543 ~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~-~h~~~V~sl~fs--pdg~~LaTgs~Dg  619 (768)
                      ..+....++...-..+.-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|.  |++..+++.+...
T Consensus        17 ~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~   96 (631)
T PF12234_consen   17 IEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH   96 (631)
T ss_pred             EEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc
Confidence            3444455555555566667666655555554455679999998877554332 346789999995  5789999999999


Q ss_pred             cEEEEECC-----C--CC-eeEE--EeecCC-CCeEEEEEeCCCCeEEEEEeCCCcEEEEEC
Q 004207          620 TVRVWDTE-----N--PD-YSLR--TFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSI  670 (768)
Q Consensus       620 tIrVWDl~-----t--~~-~~~~--~~~~h~-~~V~slafsp~g~~lLaSgs~Dg~I~iWDl  670 (768)
                      .|.+|--.     .  +. ..++  .+..|+ .+|.+..|.++|..++  |+ +..+.|+|-
T Consensus        97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV--~s-GNqlfv~dk  155 (631)
T PF12234_consen   97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV--GS-GNQLFVFDK  155 (631)
T ss_pred             EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEE--Ee-CCEEEEECC
Confidence            99998542     1  11 1122  123333 5799999999976333  32 347888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=95.57  E-value=4.2  Score=49.99  Aligned_cols=158  Identities=18%  Similarity=0.181  Sum_probs=93.6

Q ss_pred             CCCCCeEEEEEc---C----CCCEEEEEeCCCcEEEEEC------CC---------CeEEEEecc---CCCCEEEEEEcC
Q 004207          553 ASTSKVESCHFS---P----DGKLLATGGHDKKAVLWCT------ES---------FTVKSTLEE---HTQWITDVRFSP  607 (768)
Q Consensus       553 ~H~~~I~sl~fS---p----dg~~LaSgs~Dg~I~VWdl------~t---------~~~~~tl~~---h~~~V~sl~fsp  607 (768)
                      .-..+|..|+|.   .    ..++|++=. ...+.|+..      ..         ..++..+..   ...+..+|+|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            456789999998   2    223555543 456777661      11         123334432   234678999999


Q ss_pred             C-CCEEEEEeCCCcEEEEECCCC----CeeEEEeecCC----------CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC
Q 004207          608 S-LSRLATSSADRTVRVWDTENP----DYSLRTFTGHS----------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (768)
Q Consensus       608 d-g~~LaTgs~DgtIrVWDl~t~----~~~~~~~~~h~----------~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s  672 (768)
                      . ...||+....|...|||+...    ...+.....+.          .....|.|.++-..+| +|+ ...+.++|+++
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~  233 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFES  233 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCC
Confidence            4 568999999999999999211    11111111111          2334788987766566 454 45789999997


Q ss_pred             CeeEE---EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207          673 GSCAG---VFKCQSGATQMRFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       673 g~~i~---~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                      .....   .......|..+.-++.....+..-+...|..+|+..
T Consensus       234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             CCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence            75533   222245577777777633322233346677788776

These proteins are found in fungi.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.48  E-value=2.2  Score=52.13  Aligned_cols=112  Identities=14%  Similarity=0.151  Sum_probs=69.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCC--------EEEEEEcC----------------CCCEEEEEeCCCcEE
Q 004207          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--------ITDVRFSP----------------SLSRLATSSADRTVR  622 (768)
Q Consensus       567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~--------V~sl~fsp----------------dg~~LaTgs~DgtIr  622 (768)
                      +..|+.++.++.|.-.|..+++.+..+......        ...+.+..                .+..++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            556777778889999999999998877532211        11233321                234788889999999


Q ss_pred             EEECCCCCeeEEEeecCCCCe-------------EEEEEeC--CCCeEEEEEeC----------CCcEEEEECCCCeeEE
Q 004207          623 VWDTENPDYSLRTFTGHSTTV-------------MSLDFHP--SKEDLLCSCDN----------NSEIRYWSINNGSCAG  677 (768)
Q Consensus       623 VWDl~t~~~~~~~~~~h~~~V-------------~slafsp--~g~~lLaSgs~----------Dg~I~iWDl~sg~~i~  677 (768)
                      -.|.++++.+- .+. ..+.|             ..+.-.|  .++ ++++|+.          +|.|+-+|+++|+.+.
T Consensus       274 ALDA~TGk~~W-~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       274 ALDADTGKLCE-DFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EEECCCCCEEE-Eec-CCCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence            99999988642 221 11111             0011111  123 3334432          6889999999999988


Q ss_pred             EEec
Q 004207          678 VFKC  681 (768)
Q Consensus       678 ~~~~  681 (768)
                      .+..
T Consensus       351 ~~~~  354 (764)
T TIGR03074       351 AWDP  354 (764)
T ss_pred             EEec
Confidence            7763

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.46  E-value=0.91  Score=53.72  Aligned_cols=107  Identities=11%  Similarity=0.099  Sum_probs=59.0

Q ss_pred             CCCEEEEEeCC-C-----cEEEEECCCCeEE--EEeccCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCCee
Q 004207          566 DGKLLATGGHD-K-----KAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENPDYS  632 (768)
Q Consensus       566 dg~~LaSgs~D-g-----~I~VWdl~t~~~~--~tl~~h~~~V~sl~fspdg~~LaTgs~Dg-----tIrVWDl~t~~~~  632 (768)
                      ++.++++||.| |     ++..||..+.+=.  ..+...........+  +|.+.++|+.||     +|-.||.++.+..
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~  409 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWT  409 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCccc
Confidence            56788899988 3     5677777665421  111111111111112  477888999987     5888888876542


Q ss_pred             EEEeecCCCCeEEEEEeCCCCeEEEEEeCCC------cEEEEECCCCeeE
Q 004207          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS------EIRYWSINNGSCA  676 (768)
Q Consensus       633 ~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg------~I~iWDl~sg~~i  676 (768)
                      ...  .............-+..++++|+.++      +|..||..+....
T Consensus       410 ~va--~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~  457 (571)
T KOG4441|consen  410 PVA--PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT  457 (571)
T ss_pred             ccC--CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence            211  11112222322222356777877543      5677888766543

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=95.45  E-value=2.7  Score=46.78  Aligned_cols=191  Identities=14%  Similarity=0.146  Sum_probs=107.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEc----CCCCE--EEEEe-CC---CcEEEEECCCCCeeEEE
Q 004207          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS----PSLSR--LATSS-AD---RTVRVWDTENPDYSLRT  635 (768)
Q Consensus       566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fs----pdg~~--LaTgs-~D---gtIrVWDl~t~~~~~~~  635 (768)
                      ...+|+....++-+.+||++. +.+..+.  .+.++.|...    -.++.  |+.++ .+   .+|++|.+......+..
T Consensus        67 ~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~  143 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD  143 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred             ccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence            455777777888899999974 5555553  2344444332    12332  34443 32   47999987642222333


Q ss_pred             eec-------CCCCeEEEEEe--C-CCCeEEEEEeCCCcEEEEECC---CC----eeEEEEecCCCeeEEEEecCCCEEE
Q 004207          636 FTG-------HSTTVMSLDFH--P-SKEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKCQSGATQMRFQPRLGRIL  698 (768)
Q Consensus       636 ~~~-------h~~~V~slafs--p-~g~~lLaSgs~Dg~I~iWDl~---sg----~~i~~~~~~~~i~sl~fsp~~~~ll  698 (768)
                      +..       ....++.+|+.  + ++..++++.+.+|.+.-|-+.   .+    +.++.|.....+..|......++|+
T Consensus       144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY  223 (381)
T PF02333_consen  144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY  223 (381)
T ss_dssp             -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred             cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Confidence            321       12346777763  3 456667778889998888764   33    4688888888999999999999999


Q ss_pred             EEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEe--CCC-CEEEEEE-CCCcEEEeC
Q 004207          699 AAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAS--TVN-GMVASAS-HDKCVKIWK  768 (768)
Q Consensus       699 ags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~s--pdg-~~LaSgs-~DG~V~IWD  768 (768)
                      .+-.+-.|.-|+.+.......    .+.+...+     ......|-.|++-  .++ .||++++ .+++..|||
T Consensus       224 vgEE~~GIW~y~Aep~~~~~~----~~v~~~~g-----~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~  288 (381)
T PF02333_consen  224 VGEEDVGIWRYDAEPEGGNDR----TLVASADG-----DGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD  288 (381)
T ss_dssp             EEETTTEEEEEESSCCC-S------EEEEEBSS-----SSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred             EecCccEEEEEecCCCCCCcc----eeeecccc-----cccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence            999998888888764321110    00000000     0123456666653  333 4666555 466777774

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.37  E-value=3.3  Score=44.46  Aligned_cols=114  Identities=14%  Similarity=0.137  Sum_probs=72.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECC-------CCeEEEEecc-----CCCCEEEEEEcCCCC------------EEE
Q 004207          558 VESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTLEE-----HTQWITDVRFSPSLS------------RLA  613 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~-------t~~~~~tl~~-----h~~~V~sl~fspdg~------------~La  613 (768)
                      -+.|+|+|.+.+.++....+...+||..       ...++.++..     .....+.+.|+....            .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            4679999999888888888899999986       1223444432     124577888874322            367


Q ss_pred             EEeCCCcEEEEECCCCCe----eEEEee-cCCCCe-EEEEEeCC--CCeEEEEEeCCCcEEEEECC
Q 004207          614 TSSADRTVRVWDTENPDY----SLRTFT-GHSTTV-MSLDFHPS--KEDLLCSCDNNSEIRYWSIN  671 (768)
Q Consensus       614 Tgs~DgtIrVWDl~t~~~----~~~~~~-~h~~~V-~slafsp~--g~~lLaSgs~Dg~I~iWDl~  671 (768)
                      .+++||+|.-|...-...    ....+. ...+.| ..+++...  +..|+++--..++|.|||-.
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~  170 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS  170 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence            889999999998532211    122222 112333 44555533  56666666678999999865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.24  E-value=0.89  Score=50.99  Aligned_cols=146  Identities=10%  Similarity=0.114  Sum_probs=77.8

Q ss_pred             CeEEEEEcCCCCEEEEEeC--------------------CCcEEEEECCCCeEEEEeccCC--CCEEEEEEcCC--CCEE
Q 004207          557 KVESCHFSPDGKLLATGGH--------------------DKKAVLWCTESFTVKSTLEEHT--QWITDVRFSPS--LSRL  612 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~--------------------Dg~I~VWdl~t~~~~~tl~~h~--~~V~sl~fspd--g~~L  612 (768)
                      --+.+-|.|..+.++|...                    ..+++|||+.+.+.+.++....  ..+..|+|..+  ..+-
T Consensus       182 ~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~g  261 (461)
T PF05694_consen  182 FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYG  261 (461)
T ss_dssp             ----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EE
T ss_pred             CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccce
Confidence            3466778888888887754                    3479999999999999886543  24667888654  4443


Q ss_pred             EE-EeCCCcEEEEEC-CCCCeeE---EEeec-----------------CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEEC
Q 004207          613 AT-SSADRTVRVWDT-ENPDYSL---RTFTG-----------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI  670 (768)
Q Consensus       613 aT-gs~DgtIrVWDl-~t~~~~~---~~~~~-----------------h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl  670 (768)
                      ++ +.-..+|..|-- +.++...   ..+..                 -..-|+.|.++.|.++|.+++-..|.|+-||+
T Consensus       262 Fvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDI  341 (461)
T PF05694_consen  262 FVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDI  341 (461)
T ss_dssp             EEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-
T ss_pred             EEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEec
Confidence            33 333445544433 4333211   11110                 12457999999999999999999999999999


Q ss_pred             CCC---eeEEEEecCC-----------------CeeEEEEecCCCEEEEEEc
Q 004207          671 NNG---SCAGVFKCQS-----------------GATQMRFQPRLGRILAAAI  702 (768)
Q Consensus       671 ~sg---~~i~~~~~~~-----------------~i~sl~fsp~~~~llags~  702 (768)
                      ..-   +.+..+...+                 ...-+..|-+|++|++..+
T Consensus       342 SDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  342 SDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             CCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            763   3444433222                 2355778888888877653

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.22  E-value=1.7  Score=44.80  Aligned_cols=134  Identities=11%  Similarity=0.081  Sum_probs=81.1

Q ss_pred             CCEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 004207          598 QWITDVRFSPSLSRLATSSAD---------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW  668 (768)
Q Consensus       598 ~~V~sl~fspdg~~LaTgs~D---------gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iW  668 (768)
                      ...++-..+|+|++++-.-.|         |.++.|-....   +..+...-.--..++|+.+.+.+.++-+.+-+|.-|
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccCCC---ceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            345667789999985433222         44555544321   111222223346789998888788788888888778


Q ss_pred             E--CCCCe-----eEEEEec-----CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEe
Q 004207          669 S--INNGS-----CAGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTL  736 (768)
Q Consensus       669 D--l~sg~-----~i~~~~~-----~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l  736 (768)
                      |  ..+|.     .+..++.     +-..-.+++.-+|..++++-..++|..+|..+++....+                
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~ei----------------  249 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEI----------------  249 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEE----------------
Confidence            7  55543     2333322     111234566677777777778888888888887664332                


Q ss_pred             ccCCCCeeEEEEeC
Q 004207          737 SAHDKLVSSLAAST  750 (768)
Q Consensus       737 ~~H~~~I~sla~sp  750 (768)
                      .-....|+|+||--
T Consensus       250 klPt~qitsccFgG  263 (310)
T KOG4499|consen  250 KLPTPQITSCCFGG  263 (310)
T ss_pred             EcCCCceEEEEecC
Confidence            22356688888863

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.19  E-value=1.3  Score=47.15  Aligned_cols=162  Identities=12%  Similarity=0.146  Sum_probs=105.9

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004207          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (768)
Q Consensus       552 ~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h-~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~  630 (768)
                      .+-...|.++.|+|+.+.|++......-.||=..+|..+.++... -.....|.|.-++.+.++--.+..+.++.++...
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            344555999999999998888888888888877789998887431 1234677888888888888888888888776543


Q ss_pred             eeE---------EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee---EEEEec--------CCCeeEEEE
Q 004207          631 YSL---------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFKC--------QSGATQMRF  690 (768)
Q Consensus       631 ~~~---------~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~---i~~~~~--------~~~i~sl~f  690 (768)
                      ..+         ......+.....++|.|....+++ +-+..=+.||.+..+..   ++....        -..+.++.|
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~-aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFV-AKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEE-EEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            211         112222566889999999887764 44455566665543221   110000        134677889


Q ss_pred             ecCCCEEEEEEc-CCeEEEEECCCc
Q 004207          691 QPRLGRILAAAI-ENYISILDVETQ  714 (768)
Q Consensus       691 sp~~~~llags~-Dg~I~IwD~~t~  714 (768)
                      ++..+.+++-+. ++.+.-.|....
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEecCCC
Confidence            887777666664 455555665543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.14  E-value=0.6  Score=49.22  Aligned_cols=153  Identities=16%  Similarity=0.163  Sum_probs=89.4

Q ss_pred             EEcCCCCEEEEEeCC-----CcEEEEECCC-CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE-E-------CC
Q 004207          562 HFSPDGKLLATGGHD-----KKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW-D-------TE  627 (768)
Q Consensus       562 ~fSpdg~~LaSgs~D-----g~I~VWdl~t-~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVW-D-------l~  627 (768)
                      +||+||.+|+..-.|     |.|-|||.+. ...+..+..|.-....+.|.+||+.++.+.  |-|... |       ++
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNld  197 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLD  197 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchh
Confidence            689999998876443     6799999874 344556677776778899999999988863  434444 2       22


Q ss_pred             CCCeeEEEe-------------e--cCCCCeEEEEEeCCCCeEEEEEeCCCc-----EEEEECCCCeeEEEEec------
Q 004207          628 NPDYSLRTF-------------T--GHSTTVMSLDFHPSKEDLLCSCDNNSE-----IRYWSINNGSCAGVFKC------  681 (768)
Q Consensus       628 t~~~~~~~~-------------~--~h~~~V~slafsp~g~~lLaSgs~Dg~-----I~iWDl~sg~~i~~~~~------  681 (768)
                      +.+..+..+             .  -+.-.|..++..++|. +++.|-..|-     -.+=-.+.++.+..+..      
T Consensus       198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~  276 (366)
T COG3490         198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA  276 (366)
T ss_pred             hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH
Confidence            222211111             1  2334577788777765 4444432221     11111122333333322      


Q ss_pred             --CCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCceEe
Q 004207          682 --QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCR  717 (768)
Q Consensus       682 --~~~i~sl~fsp~~~~llags~-Dg~I~IwD~~t~~~~  717 (768)
                        ...|-+++.+.+.+.++..+- .+...+||..++..+
T Consensus       277 ~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv  315 (366)
T COG3490         277 AFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVV  315 (366)
T ss_pred             HHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEE
Confidence              234677888877676666554 455677887776554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.11  E-value=0.13  Score=62.32  Aligned_cols=71  Identities=27%  Similarity=0.389  Sum_probs=57.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEE---EcCCCCEEEEEeCCCcEEEEEC
Q 004207          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR---FSPSLSRLATSSADRTVRVWDT  626 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~---fspdg~~LaTgs~DgtIrVWDl  626 (768)
                      -.++|+|++|+.||..++.|-.+|.|.+||+..+++++.+..|..+++.+-   |..++..++++...|.  +|.+
T Consensus       129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            357899999999999999999999999999999999988877766655543   4445567888877775  5554

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.08  E-value=0.0056  Score=71.99  Aligned_cols=128  Identities=12%  Similarity=0.143  Sum_probs=74.4

Q ss_pred             ecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC--CCeEEEEe-----ccCCCCEEEEEEcC---CCCEEEEEeCCC
Q 004207          551 IPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE--SFTVKSTL-----EEHTQWITDVRFSP---SLSRLATSSADR  619 (768)
Q Consensus       551 l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~--t~~~~~tl-----~~h~~~V~sl~fsp---dg~~LaTgs~Dg  619 (768)
                      +++..+.|-.+.|-. +...++  -.-|.+.|||++  .|++...+     ..-...+.-|.|+|   +.-+++.+-.++
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            456666777777743 222222  233678899875  34433222     22223455666765   566788888889


Q ss_pred             cEEEEECCCCCeeEEEeecCCCCeEEEEE-----------eCCCCeEEEEEeCCCcEEEEEC-----CCCeeEEEEecCC
Q 004207          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDF-----------HPSKEDLLCSCDNNSEIRYWSI-----NNGSCAGVFKCQS  683 (768)
Q Consensus       620 tIrVWDl~t~~~~~~~~~~h~~~V~slaf-----------sp~g~~lLaSgs~Dg~I~iWDl-----~sg~~i~~~~~~~  683 (768)
                      +|++..+++...  ..+.+|...++.++|           +|||. +|+....||.+++|-+     +.-.|.+.++.+.
T Consensus       206 ~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd  282 (1283)
T KOG1916|consen  206 EIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD  282 (1283)
T ss_pred             ceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence            999988875432  444557766666554           56765 5556666777776654     2334555555444

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.04  E-value=0.21  Score=60.83  Aligned_cols=146  Identities=12%  Similarity=0.004  Sum_probs=91.6

Q ss_pred             CEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCCeeE----E------EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 004207          599 WITDVRFSPSLSRLATS--SADRTVRVWDTENPDYSL----R------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (768)
Q Consensus       599 ~V~sl~fspdg~~LaTg--s~DgtIrVWDl~t~~~~~----~------~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~  666 (768)
                      +|..+...+|+...++.  +.+-.|.+||+++-....    .      +.......+.++.|+|.-...++++..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            45555556676654443  334489999997532111    1      11112345678889997666677888899999


Q ss_pred             EEECCCC-eeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeE
Q 004207          667 YWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSS  745 (768)
Q Consensus       667 iWDl~sg-~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~s  745 (768)
                      +..+..- ..+..+......++++|+|.|..+++|-..|++.-|...-.... .+.        ....    .....|.+
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~-~ip--------~Pp~----~e~yrvl~  248 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS-EIP--------EPPV----EENYRVLS  248 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceee-ccc--------CCCc----CCCcceeE
Confidence            9877542 22334455677899999999999999999999988876443111 100        0000    01356888


Q ss_pred             EEEeCCCCEEEE
Q 004207          746 LAASTVNGMVAS  757 (768)
Q Consensus       746 la~spdg~~LaS  757 (768)
                      |+|-....+|++
T Consensus       249 v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  249 VTWLSTQEFLVV  260 (1405)
T ss_pred             EEEecceeEEEE
Confidence            888766555554

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.97  E-value=1.6  Score=46.10  Aligned_cols=151  Identities=17%  Similarity=0.118  Sum_probs=87.0

Q ss_pred             CEEEEEEcCCCCEEEEEe---CCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEE-ECCCCe
Q 004207          599 WITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW-SINNGS  674 (768)
Q Consensus       599 ~V~sl~fspdg~~LaTgs---~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iW-Dl~sg~  674 (768)
                      .+.+.++++++..++...   ....|+++......  ...+.+  ..++...|++++. +.+....+...+++ +..++.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~g--~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLTG--GSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeeccC--CccccccccCCCC-EEEEEcCCCceEEEEecCCCc
Confidence            688999999998777665   23355565544322  222232  3788889999955 55555556666666 333333


Q ss_pred             eEE-EEec--C-CCeeEEEEecCCCEEEEEEc---CCeEEEEECCCceEeeecceeEEeecCCCceEEe-ccCCCCeeEE
Q 004207          675 CAG-VFKC--Q-SGATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLKLQTLELWNMTENKTLTL-SAHDKLVSSL  746 (768)
Q Consensus       675 ~i~-~~~~--~-~~i~sl~fsp~~~~llags~---Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l-~~H~~~I~sl  746 (768)
                      ... .+..  . ..|..+.++|+|..++....   ++.|.+--+.........        .......+ ......++++
T Consensus       100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~--------~l~~~~~~~~~~~~~v~~v  171 (253)
T PF10647_consen  100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR--------RLTGPRRVAPPLLSDVTDV  171 (253)
T ss_pred             ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc--------eeccceEecccccCcceee
Confidence            221 1221  1 27999999999999887763   455655433221110000        00001111 1334578999


Q ss_pred             EEeCCCCEEEEEECCC
Q 004207          747 AASTVNGMVASASHDK  762 (768)
Q Consensus       747 a~spdg~~LaSgs~DG  762 (768)
                      +|.+++.+++.+...+
T Consensus       172 ~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  172 AWSDDSTLVVLGRSAG  187 (253)
T ss_pred             eecCCCEEEEEeCCCC
Confidence            9999988777665543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.96  E-value=2.1  Score=47.87  Aligned_cols=120  Identities=17%  Similarity=0.198  Sum_probs=84.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE----EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004207          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~----~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~  629 (768)
                      ..++|.+|.||+|.+.||+--.|++|-+++....+..    .+.+..+..|...+|+.+ .-+|..+..| |.+|.+...
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence            3468999999999999999999999999987432222    222334456889999876 4566655554 788887766


Q ss_pred             CeeEEEeecCCCCeEEEEEeCCCCeEEEEEe-CCCcEEEEECCCCee
Q 004207          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSC  675 (768)
Q Consensus       630 ~~~~~~~~~h~~~V~slafsp~g~~lLaSgs-~Dg~I~iWDl~sg~~  675 (768)
                      +..++..+.|+..|.-..|.++...++.+.+ ..+++.=+-++.+..
T Consensus       143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v  189 (657)
T KOG2377|consen  143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTM  189 (657)
T ss_pred             hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeecee
Confidence            6667888889999999999998775554444 344444455555443

>PHA02713 hypothetical protein; Provisional

Probab=94.89  E-value=0.56  Score=55.37  Aligned_cols=143  Identities=14%  Similarity=0.117  Sum_probs=71.0

Q ss_pred             CCCEEEEEeCCC-----cEEEEECCCCeEE--EEeccCCCCEEEEEEcCCCCEEEEEeCCC-------------------
Q 004207          566 DGKLLATGGHDK-----KAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSADR-------------------  619 (768)
Q Consensus       566 dg~~LaSgs~Dg-----~I~VWdl~t~~~~--~tl~~h~~~V~sl~fspdg~~LaTgs~Dg-------------------  619 (768)
                      +|++.+.||.++     +|.+||..+.+=.  ..+.........+.+  ++.+.+.|+.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence            778888888764     4778987764322  122111111122222  567777777652                   


Q ss_pred             ----cEEEEECCCCCeeE-EEeecCCCCeEEEEEeCCCCeEEEEEeCC------CcEEEEECCC-Cee--EEEEecCCCe
Q 004207          620 ----TVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINN-GSC--AGVFKCQSGA  685 (768)
Q Consensus       620 ----tIrVWDl~t~~~~~-~~~~~h~~~V~slafsp~g~~lLaSgs~D------g~I~iWDl~s-g~~--i~~~~~~~~i  685 (768)
                          +|..||.++..... ......... .+++.. + +.+++.|+.+      ..|..||.++ .+-  +..+......
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~~-~-~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~  505 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVSH-K-DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA  505 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCccccc-CcEEEE-C-CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence                47778887654321 111111111 122222 2 4567677654      2467899886 333  2333222222


Q ss_pred             eEEEEecCCCEEEEEEcCC--eEEEEECCCc
Q 004207          686 TQMRFQPRLGRILAAAIEN--YISILDVETQ  714 (768)
Q Consensus       686 ~sl~fsp~~~~llags~Dg--~I~IwD~~t~  714 (768)
                      ..++.. ++..+++|+.++  .+..||..+.
T Consensus       506 ~~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        506 LHTILH-DNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             ceeEEE-CCEEEEEeeecceeehhhcCcccc
Confidence            223322 345566777776  4555555554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.85  E-value=3.5  Score=43.57  Aligned_cols=155  Identities=16%  Similarity=0.126  Sum_probs=96.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEeccCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 004207          558 VESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~Dg--~I~VWdl~t~~~~~tl~~h~-~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~  634 (768)
                      .-.+.|..+|.++-+.+.-|  .|+.+|+.+++......-.. ..-..|+...| ++..-.-.++...+||.++.+. +.
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~-~~  124 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKK-IG  124 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEE-EE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceE-EE
Confidence            34677867888888887766  68999999998876553322 22334444433 3444445688999999998654 45


Q ss_pred             EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC------CCeeEEEEecCCCEEEEEE-cCCeEE
Q 004207          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMRFQPRLGRILAAA-IENYIS  707 (768)
Q Consensus       635 ~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~------~~i~sl~fsp~~~~llags-~Dg~I~  707 (768)
                      .+. ..+.-+.++  .++..++.| +....|+++|..+.+.++.+...      ..+.-+.|.  ++.|++-- ....|.
T Consensus       125 ~~~-y~~EGWGLt--~dg~~Li~S-DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~  198 (264)
T PF05096_consen  125 TFP-YPGEGWGLT--SDGKRLIMS-DGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIV  198 (264)
T ss_dssp             EEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEE
T ss_pred             EEe-cCCcceEEE--cCCCEEEEE-CCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEE
Confidence            544 345667777  445656644 44668999999888877766641      235567776  34555554 567888


Q ss_pred             EEECCCceEeeec
Q 004207          708 ILDVETQVCRLKL  720 (768)
Q Consensus       708 IwD~~t~~~~~~~  720 (768)
                      ..|..++.+...+
T Consensus       199 ~Idp~tG~V~~~i  211 (264)
T PF05096_consen  199 RIDPETGKVVGWI  211 (264)
T ss_dssp             EEETTT-BEEEEE
T ss_pred             EEeCCCCeEEEEE
Confidence            9999998776543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.83  E-value=1.2  Score=49.71  Aligned_cols=142  Identities=11%  Similarity=0.119  Sum_probs=78.4

Q ss_pred             CCeEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--Ce--EEEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004207          556 SKVESCHFSPDGKLLATGG-----------HDK-KAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs-----------~Dg-~I~VWdl~t--~~--~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg  619 (768)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  ++  ....+.........++|.+++  |++++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            3467899999999877653           223 777776432  22  223333333456889999888  44444444


Q ss_pred             cEEEEECCCC-----C--eeEEEeec----CCCCeEEEEEeCCCCeEEEEEeC------------------CCcEEEEEC
Q 004207          620 TVRVWDTENP-----D--YSLRTFTG----HSTTVMSLDFHPSKEDLLCSCDN------------------NSEIRYWSI  670 (768)
Q Consensus       620 tIrVWDl~t~-----~--~~~~~~~~----h~~~V~slafsp~g~~lLaSgs~------------------Dg~I~iWDl  670 (768)
                      .+++.|.+..     +  ..+..+..    +...+..++|.|+|..+++.++.                  .|.|.-+|.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            3344455321     1  11122222    12447789999998755544421                  134555565


Q ss_pred             CCCeeEEEEecCCCeeEEEEecCCCEEEE
Q 004207          671 NNGSCAGVFKCQSGATQMRFQPRLGRILA  699 (768)
Q Consensus       671 ~sg~~i~~~~~~~~i~sl~fsp~~~~lla  699 (768)
                      ..++....-........++|++++..+++
T Consensus       172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~t  200 (367)
T TIGR02604       172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFC  200 (367)
T ss_pred             CCCeEEEEecCcCCCccceECCCCCEEEE
Confidence            54443222222344568999998766554

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.66  E-value=9.7  Score=42.92  Aligned_cols=151  Identities=16%  Similarity=0.107  Sum_probs=79.6

Q ss_pred             EEEEcCCCCEEEEEeCCC-----------cEEEEECCCCeE--EEEeccCCCC--EEEEEEcCCCCEEEEEeCC----Cc
Q 004207          560 SCHFSPDGKLLATGGHDK-----------KAVLWCTESFTV--KSTLEEHTQW--ITDVRFSPSLSRLATSSAD----RT  620 (768)
Q Consensus       560 sl~fSpdg~~LaSgs~Dg-----------~I~VWdl~t~~~--~~tl~~h~~~--V~sl~fspdg~~LaTgs~D----gt  620 (768)
                      .+.|.+|++.|+....+.           .|++|.+.+...  ...+.+....  ...+..++|+++|+..+..    ..
T Consensus       174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~  253 (414)
T PF02897_consen  174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE  253 (414)
T ss_dssp             EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred             eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence            399999988766554333           377888766432  2344333322  6788899999987765433    34


Q ss_pred             EEEEECCCC---CeeEEEeecCCCCeE-EEEEeCCCCeEEEEEe---CCCcEEEEECCCCee---E-EEEecCCCeeEEE
Q 004207          621 VRVWDTENP---DYSLRTFTGHSTTVM-SLDFHPSKEDLLCSCD---NNSEIRYWSINNGSC---A-GVFKCQSGATQMR  689 (768)
Q Consensus       621 IrVWDl~t~---~~~~~~~~~h~~~V~-slafsp~g~~lLaSgs---~Dg~I~iWDl~sg~~---i-~~~~~~~~i~sl~  689 (768)
                      |++.|+..+   ......+......+. .+... . ..+++...   .++.|...++.....   . ..+.....+.-..
T Consensus       254 v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~-~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~  331 (414)
T PF02897_consen  254 VYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-G-DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLED  331 (414)
T ss_dssp             EEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-T-TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEE
T ss_pred             EEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-C-CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEE
Confidence            788888764   223444444444443 34444 3 44444432   245677778876542   2 2233333333333


Q ss_pred             EecCCCEEEEEEcC-C--eEEEEECC
Q 004207          690 FQPRLGRILAAAIE-N--YISILDVE  712 (768)
Q Consensus       690 fsp~~~~llags~D-g--~I~IwD~~  712 (768)
                      +...+.+|+....+ +  .|+++|+.
T Consensus       332 ~~~~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  332 VSLFKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEEETT
T ss_pred             EEEECCEEEEEEEECCccEEEEEECC
Confidence            34444566555543 3  36777777

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.65  E-value=15  Score=45.04  Aligned_cols=207  Identities=11%  Similarity=0.118  Sum_probs=115.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEE-EEEcCC--CCEEEEEeCCCcEEEEECCCC-C
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSPS--LSRLATSSADRTVRVWDTENP-D  630 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~s-l~fspd--g~~LaTgs~DgtIrVWDl~t~-~  630 (768)
                      +.++.--.|+..++.-+-|..|+-..+|.-. ++.+.+--.-+ .+.. +.|+.+  ...|+++ ..+.+++..++.- +
T Consensus       629 t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~k-ev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqk  705 (1096)
T KOG1897|consen  629 TQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLK-EVNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQK  705 (1096)
T ss_pred             CCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchH-HhhhhcccccccCCceEEEe-cCCceEEEEecchhh
Confidence            4455556666655443334445666666533 34333221111 1222 223332  2345554 4556777777642 2


Q ss_pred             eeEEEeecCCCCeEEEEEeCCCCeEEEEEeC-----------C---CcEEEEECCCCeeEEEEecC--C---CeeEEEEe
Q 004207          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------N---SEIRYWSINNGSCAGVFKCQ--S---GATQMRFQ  691 (768)
Q Consensus       631 ~~~~~~~~h~~~V~slafsp~g~~lLaSgs~-----------D---g~I~iWDl~sg~~i~~~~~~--~---~i~sl~fs  691 (768)
                      ..+++.. -......+++.+... ++.+.+.           .   ..++++|-.+.+.+...+..  .   .+.++.|.
T Consensus       706 l~irtvp-l~~~prrI~~q~~sl-~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~  783 (1096)
T KOG1897|consen  706 LHIRTVP-LGESPRRICYQESSL-TFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFT  783 (1096)
T ss_pred             cceeeec-CCCChhheEecccce-EEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeec
Confidence            2244433 334567778877433 3333321           1   23677777776666554432  2   24455587


Q ss_pred             cC-CCEEEEEEc----------CCeEEEEECCCce---Eeeecc---------------------eeEEeecCCCceE-E
Q 004207          692 PR-LGRILAAAI----------ENYISILDVETQV---CRLKLQ---------------------TLELWNMTENKTL-T  735 (768)
Q Consensus       692 p~-~~~llags~----------Dg~I~IwD~~t~~---~~~~~~---------------------~I~iwd~~~~~~~-~  735 (768)
                      .+ +.++++|+.          .|.|.+|.+....   .++...                     .+++|++.+++.+ .
T Consensus       784 ~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In~~vrLye~t~~~eLr~  863 (1096)
T KOG1897|consen  784 DDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGINQSVRLYEWTTERELRI  863 (1096)
T ss_pred             CCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecCcEEEEEEccccceehh
Confidence            76 566666653          4778888876621   111111                     8889998888555 3


Q ss_pred             eccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207          736 LSAHDKLVSSLAASTVNGMVASASHDKCVKI  766 (768)
Q Consensus       736 l~~H~~~I~sla~spdg~~LaSgs~DG~V~I  766 (768)
                      -..|...+..+...-.++.+++|..=++|.+
T Consensus       864 e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl  894 (1096)
T KOG1897|consen  864 ECNISNPIIALDLQVKGDEIAVGDLMRSITL  894 (1096)
T ss_pred             hhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence            4477888999999988999999987666554

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.49  E-value=7.4  Score=41.06  Aligned_cols=145  Identities=12%  Similarity=0.058  Sum_probs=87.3

Q ss_pred             CeEEEEEcCCCCEEEEEe---CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCCee
Q 004207          557 KVESCHFSPDGKLLATGG---HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD-TENPDYS  632 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs---~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD-l~t~~~~  632 (768)
                      .+.+.++++|+..+|...   ....++++..  +.....+. ....+..-.|++++...+....+...+++. ...+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688999999999776655   2234555543  33332221 223688889999987777766667777774 3333322


Q ss_pred             EEEeecC--CCCeEEEEEeCCCCeEEEEEe--CCCcEEEEECC---CC---e---eEEEEe-cCCCeeEEEEecCCCEEE
Q 004207          633 LRTFTGH--STTVMSLDFHPSKEDLLCSCD--NNSEIRYWSIN---NG---S---CAGVFK-CQSGATQMRFQPRLGRIL  698 (768)
Q Consensus       633 ~~~~~~h--~~~V~slafsp~g~~lLaSgs--~Dg~I~iWDl~---sg---~---~i~~~~-~~~~i~sl~fsp~~~~ll  698 (768)
                      .......  ...|.++.++|||.++.+...  .++.|.+--+.   .+   .   .+.... ....+..+.|.+++..++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence            2222211  128999999999998877663  34666665442   22   1   111111 135688999999977666


Q ss_pred             EEEcCC
Q 004207          699 AAAIEN  704 (768)
Q Consensus       699 ags~Dg  704 (768)
                      .+...+
T Consensus       182 ~~~~~~  187 (253)
T PF10647_consen  182 LGRSAG  187 (253)
T ss_pred             EeCCCC
Confidence            655433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.36  E-value=0.1  Score=40.16  Aligned_cols=33  Identities=21%  Similarity=0.438  Sum_probs=29.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT  588 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~  588 (768)
                      ...|.+++|+|...+||.+..||.|.||.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            356999999999999999999999999998 443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.28  E-value=4.7  Score=43.73  Aligned_cols=161  Identities=12%  Similarity=0.177  Sum_probs=83.3

Q ss_pred             CceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 004207          542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV  621 (768)
Q Consensus       542 ~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtI  621 (768)
                      +.+++.+.  ..-.+.|..+..++||++++++..-..+.-||--...-...-..-...|.++.|.|++.+.+++ ..|.|
T Consensus       133 G~tW~~~~--~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~  209 (302)
T PF14870_consen  133 GKTWQAVV--SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQI  209 (302)
T ss_dssp             TSSEEEEE---S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEE
T ss_pred             CCCeeEcc--cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEE
Confidence            44555443  3445779999999999999888665555677743211111122245789999999998776654 88888


Q ss_pred             EEEECC-CCCeeEE---EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCeeEEEEecC
Q 004207          622 RVWDTE-NPDYSLR---TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRFQPR  693 (768)
Q Consensus       622 rVWDl~-t~~~~~~---~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~----~~~i~sl~fsp~  693 (768)
                      +.=+.. ..+.-..   ......-.+..++|.+++. ++++|+ .|.+ +.....|+.-.....    ...+..+.|...
T Consensus       210 ~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~  286 (302)
T PF14870_consen  210 QFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP  286 (302)
T ss_dssp             EEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred             EEccCCCCccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCC
Confidence            887722 1111001   1111223478999998855 665665 4543 455555654444332    455788888765


Q ss_pred             CCEEEEEEcCCeEEEE
Q 004207          694 LGRILAAAIENYISIL  709 (768)
Q Consensus       694 ~~~llags~Dg~I~Iw  709 (768)
                       ..-++.+.+|.|.-|
T Consensus       287 -~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  287 -DKGFVLGQDGVLLRY  301 (302)
T ss_dssp             -TEEEEE-STTEEEEE
T ss_pred             -CceEEECCCcEEEEe
Confidence             567777888887655

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.07  E-value=1.6  Score=51.64  Aligned_cols=108  Identities=13%  Similarity=0.160  Sum_probs=59.6

Q ss_pred             CCCEEEEEeCCCc-----EEEEECCCCeE--EEEeccCCCCEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCCee
Q 004207          566 DGKLLATGGHDKK-----AVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADR------TVRVWDTENPDYS  632 (768)
Q Consensus       566 dg~~LaSgs~Dg~-----I~VWdl~t~~~--~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg------tIrVWDl~t~~~~  632 (768)
                      +|.+.|+||.||.     |-.||..+.+-  +..+......+-.+.+  ++.+.++|+.|+      +|..||..+....
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~  457 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWT  457 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence            7888999999874     66677665332  2212111112222222  477778887654      5788888876542


Q ss_pred             EE-EeecCCCCeEEEEEeCCCCeEEEEEeCCCc-----EEEEECCCCeeEEE
Q 004207          633 LR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-----IRYWSINNGSCAGV  678 (768)
Q Consensus       633 ~~-~~~~h~~~V~slafsp~g~~lLaSgs~Dg~-----I~iWDl~sg~~i~~  678 (768)
                      .. ....-... ..++..  +..+++.|+.|+.     |..||.++.+....
T Consensus       458 ~~~~M~~~R~~-~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v  506 (571)
T KOG4441|consen  458 LIAPMNTRRSG-FGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMV  506 (571)
T ss_pred             ecCCccccccc-ceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence            21 11111111 123332  2568888887763     77788877654443

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=93.94  E-value=14  Score=41.94  Aligned_cols=177  Identities=13%  Similarity=0.192  Sum_probs=98.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------------------
Q 004207          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-------------------  628 (768)
Q Consensus       568 ~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t-------------------  628 (768)
                      .+|++=+.||.+.+|+-+..-....+.. .--.-.+.|.+....|++++.+..|.-|....                   
T Consensus       146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~  224 (418)
T PF14727_consen  146 DFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDIS  224 (418)
T ss_pred             eEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccccc
Confidence            4677789999999999776554444443 22234577888888999999998898887531                   


Q ss_pred             -CCeeEE--EeecCCCCeEEEEE---eCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEE-Eec----CC---
Q 004207          629 -PDYSLR--TFTGHSTTVMSLDF---HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR-FQP----RL---  694 (768)
Q Consensus       629 -~~~~~~--~~~~h~~~V~slaf---sp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~-fsp----~~---  694 (768)
                       ++....  ++. -...+..|..   +.....+++-|  ...+.+.+- +|......+......+++ |..    .+   
T Consensus       225 ~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg--er~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~  300 (418)
T PF14727_consen  225 SGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG--ERSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTR  300 (418)
T ss_pred             ccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe--cceEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCc
Confidence             010000  111 1223444433   22334455555  456777765 466555555544433332 211    21   


Q ss_pred             CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCC-CeeEEEEeCCCCEEEEEECCCcEEE
Q 004207          695 GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK-LVSSLAASTVNGMVASASHDKCVKI  766 (768)
Q Consensus       695 ~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~-~I~sla~spdg~~LaSgs~DG~V~I  766 (768)
                      ..+++++.++.+.||.-.+.          +|....       .|.- .|.-..|..-...|++-+.||.+.+
T Consensus       301 ~~llV~t~t~~LlVy~d~~L----------~WsA~l-------~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v  356 (418)
T PF14727_consen  301 LNLLVGTHTGTLLVYEDTTL----------VWSAQL-------PHVPVALSVANFNGLKGLIVSLSDEGQLSV  356 (418)
T ss_pred             eEEEEEecCCeEEEEeCCeE----------EEecCC-------CCCCEEEEecccCCCCceEEEEcCCCcEEE
Confidence            13888899999999865432          343221       1111 0111222333467888888888765

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.91  E-value=0.07  Score=63.20  Aligned_cols=119  Identities=18%  Similarity=0.237  Sum_probs=72.6

Q ss_pred             CeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEE-----------EcCCCCEEEEEeCCCcEE
Q 004207          557 KVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR-----------FSPSLSRLATSSADRTVR  622 (768)
Q Consensus       557 ~I~sl~fSp---dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~-----------fspdg~~LaTgs~DgtIr  622 (768)
                      .+.-|.|+|   +.-++..+-.++.|++.++.+... ..+.+|..++++++           .+|||+.|++++.||.++
T Consensus       182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~  260 (1283)
T KOG1916|consen  182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG  260 (1283)
T ss_pred             CcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence            334445544   666777888888888877654332 34455776665554           489999999999999999


Q ss_pred             EEECCC-CC---eeEEEeecCC-CCeEEEEEeCCC---------CeEEEEEeCCCcEEEEECCCCeeE
Q 004207          623 VWDTEN-PD---YSLRTFTGHS-TTVMSLDFHPSK---------EDLLCSCDNNSEIRYWSINNGSCA  676 (768)
Q Consensus       623 VWDl~t-~~---~~~~~~~~h~-~~V~slafsp~g---------~~lLaSgs~Dg~I~iWDl~sg~~i  676 (768)
                      .|.+.- +.   .++..++.|. .+-.|.-|+...         ..+|-+.+.+..+++|.....+|.
T Consensus       261 f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  261 FYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            887642 11   1245556665 333333333221         123334445667888877666665

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=93.82  E-value=3.5  Score=50.16  Aligned_cols=149  Identities=13%  Similarity=0.102  Sum_probs=95.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--eeE
Q 004207          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSL  633 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~--~~~  633 (768)
                      +.|.++..- +|++||.-  ...|++|++.+.+.++.-..|..++..+...-.+..+++|.--+.|.+.-.+..+  ...
T Consensus       830 Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~e  906 (1096)
T KOG1897|consen  830 GAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEE  906 (1096)
T ss_pred             cceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEE
Confidence            445554332 67777654  4589999999887777777788889999998889999999888877666554433  433


Q ss_pred             EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-------------------CeeEEEEecCCCeeE--EEEec
Q 004207          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------------------GSCAGVFKCQSGATQ--MRFQP  692 (768)
Q Consensus       634 ~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-------------------g~~i~~~~~~~~i~s--l~fsp  692 (768)
                      ..-..+....+++.+-.+..  ++.+..+|.+++....+                   |+.+..+.+..-|.+  -...|
T Consensus       907 vArD~~p~Wmtaveil~~d~--ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~  984 (1096)
T KOG1897|consen  907 VARDYNPNWMTAVEILDDDT--YLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIP  984 (1096)
T ss_pred             eehhhCccceeeEEEecCce--EEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccccC
Confidence            33444667788888775533  33556677776654432                   122333332222333  13345


Q ss_pred             CCCEEEEEEcCCeEEEE
Q 004207          693 RLGRILAAAIENYISIL  709 (768)
Q Consensus       693 ~~~~llags~Dg~I~Iw  709 (768)
                      -+..++.|+.+|.|-+.
T Consensus       985 ~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen  985 LEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred             CCCcEEEEEccceEEEE
Confidence            56678999999987654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.80  E-value=1.8  Score=51.15  Aligned_cols=116  Identities=10%  Similarity=0.106  Sum_probs=71.7

Q ss_pred             CeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeeEEEE--ecCCCEEEEEEcCCeEEEEECCCceE-
Q 004207          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRF--QPRLGRILAAAIENYISILDVETQVC-  716 (768)
Q Consensus       642 ~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--~~~i~sl~f--sp~~~~llags~Dg~I~IwD~~t~~~-  716 (768)
                      .++-+.-+.-++ +.++-+....+.|||.+.+........  .+.|..+.|  .|++..+++.+..+.|.+|.-..... 
T Consensus        31 ~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   31 NPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            444444444444 333444566899999998876654443  788999988  57888999999999999986422110 


Q ss_pred             --eeecceeEEeecCCCceEEeccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          717 --RLKLQTLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       717 --~~~~~~I~iwd~~~~~~~~l~~H~-~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                        ......++..|        +..|. .+|.+..|.++|.+++.+|  ..+.|+|
T Consensus       110 ~~~p~w~~i~~i~--------i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d  154 (631)
T PF12234_consen  110 NKGPSWAPIRKID--------ISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD  154 (631)
T ss_pred             cCCcccceeEEEE--------eecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence              00111122222        22333 4689999999887665443  3555554

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.76  E-value=13  Score=40.89  Aligned_cols=28  Identities=11%  Similarity=0.050  Sum_probs=21.7

Q ss_pred             cCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 004207          738 AHDKLVSSLAASTVNGMVASASHDKCVK  765 (768)
Q Consensus       738 ~H~~~I~sla~spdg~~LaSgs~DG~V~  765 (768)
                      .....+..|++.|||.++++.+.+|.|.
T Consensus       303 ~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  303 GFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             TSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            4445799999999999988888888874

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PHA03098 kelch-like protein; Provisional

Probab=93.50  E-value=1.8  Score=50.66  Aligned_cols=106  Identities=11%  Similarity=0.062  Sum_probs=53.3

Q ss_pred             CCCEEEEEeCCC------cEEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCee
Q 004207          566 DGKLLATGGHDK------KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYS  632 (768)
Q Consensus       566 dg~~LaSgs~Dg------~I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~D-----gtIrVWDl~t~~~~  632 (768)
                      ++.+++.||.++      .+..||..+.+-...  +.........+.+  ++.+++.|+.+     ..+.+||..+....
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            566677776543      577888776544321  1111111222222  46677777765     35778888765532


Q ss_pred             EEEeecCCCCeEEEEEeCCCCeEEEEEeCC------CcEEEEECCCCee
Q 004207          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSC  675 (768)
Q Consensus       633 ~~~~~~h~~~V~slafsp~g~~lLaSgs~D------g~I~iWDl~sg~~  675 (768)
                      ...-..+...-.+++..  ++.+++.|+.+      ..+..||..+.+-
T Consensus       372 ~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W  418 (534)
T PHA03098        372 EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKW  418 (534)
T ss_pred             eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence            11100111111122222  24566677632      3578899876543

>PRK10350 hypothetical protein; Provisional

Probab=93.46  E-value=0.25  Score=45.24  Aligned_cols=26  Identities=31%  Similarity=0.308  Sum_probs=13.3

Q ss_pred             ccccchhhhhh-hHHHHHHHHHHHHHH
Q 004207           68 NEKHSESAASY-IESQVIKAREQQQQQ   93 (768)
Q Consensus        68 ~~~~s~~a~qy-iq~qq~q~~qqQqQQ   93 (768)
                      +...++....| +.+++..+.+.+.+|
T Consensus        21 N~~NNPnqpGY~ipSQQRmQtqMQ~QQ   47 (145)
T PRK10350         21 NTLNNPNQPGYQIPSQQRMQTQMQTQQ   47 (145)
T ss_pred             hccCCCCCCCCcCcHHHHHHHHHHHHH
Confidence            44445556667 555555444444443

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=93.42  E-value=17  Score=41.27  Aligned_cols=143  Identities=13%  Similarity=0.148  Sum_probs=87.8

Q ss_pred             CCEEEEEeCCCcEEEEECCCCe-----EEEEeccCCCCEEEEEEc---C--CCCEEEEEeCCCcEEEEECCCC--C----
Q 004207          567 GKLLATGGHDKKAVLWCTESFT-----VKSTLEEHTQWITDVRFS---P--SLSRLATSSADRTVRVWDTENP--D----  630 (768)
Q Consensus       567 g~~LaSgs~Dg~I~VWdl~t~~-----~~~tl~~h~~~V~sl~fs---p--dg~~LaTgs~DgtIrVWDl~t~--~----  630 (768)
                      ...|++|+..|.++||+.....     ++.+. .-..+|..|..-   +  +...||+ -.-..+.||.+...  .    
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence            4589999999999999875432     22222 234677777653   2  2234444 56677888887321  1    


Q ss_pred             --eeEEEeecCC--CCeEEEEEeC----CCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc
Q 004207          631 --YSLRTFTGHS--TTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI  702 (768)
Q Consensus       631 --~~~~~~~~h~--~~V~slafsp----~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~  702 (768)
                        ..+.....|.  .....+++-|    .++.++|+=+.||.+.+|+-+.....+.+..---...++|.+....+++++.
T Consensus       115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss  194 (418)
T PF14727_consen  115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS  194 (418)
T ss_pred             cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence              2233333343  2233344333    3367899999999999999875544444433222345678888888888888


Q ss_pred             CCeEEEEEC
Q 004207          703 ENYISILDV  711 (768)
Q Consensus       703 Dg~I~IwD~  711 (768)
                      +..|..|..
T Consensus       195 s~~l~~Yky  203 (418)
T PF14727_consen  195 SWTLECYKY  203 (418)
T ss_pred             ceeEEEecH
Confidence            877777765

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.34  E-value=14  Score=40.08  Aligned_cols=155  Identities=14%  Similarity=0.126  Sum_probs=75.6

Q ss_pred             ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC-C
Q 004207          594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-N  672 (768)
Q Consensus       594 ~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~-s  672 (768)
                      ..-.+.+..+..+++++++++++......-||.-....... .......|.+|.|.|++...+ . ...|.|++=+.. .
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~-~r~~~~riq~~gf~~~~~lw~-~-~~Gg~~~~s~~~~~  217 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPH-NRNSSRRIQSMGFSPDGNLWM-L-ARGGQIQFSDDPDD  217 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEE-E--SSS-EEEEEE-TTS-EEE-E-ETTTEEEEEE-TTE
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEE-ccCccceehhceecCCCCEEE-E-eCCcEEEEccCCCC
Confidence            34456789999999999999987777777888654333222 222457899999999976444 3 367888887722 1


Q ss_pred             CeeEEE----E-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEE
Q 004207          673 GSCAGV----F-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLA  747 (768)
Q Consensus       673 g~~i~~----~-~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla  747 (768)
                      .+.-..    + .....+..++|.+++. +.+++..|.+. .....++.=.+..             ....-...++.|.
T Consensus       218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg~G~l~-~S~DgGktW~~~~-------------~~~~~~~n~~~i~  282 (302)
T PF14870_consen  218 GETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGGSGTLL-VSTDGGKTWQKDR-------------VGENVPSNLYRIV  282 (302)
T ss_dssp             EEEE---B-TTSS--S-EEEEEESSSS--EEEEESTT-EE-EESSTTSS-EE-G-------------GGTTSSS---EEE
T ss_pred             ccccccccCCcccCceeeEEEEecCCCC-EEEEeCCccEE-EeCCCCccceECc-------------cccCCCCceEEEE
Confidence            211111    1 1123478899998754 55566666443 2222222111100             0012234467788


Q ss_pred             EeCCCCEEEEEECCCcEEEe
Q 004207          748 ASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       748 ~spdg~~LaSgs~DG~V~IW  767 (768)
                      |.... .-++.+.||.|.-|
T Consensus       283 f~~~~-~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  283 FVNPD-KGFVLGQDGVLLRY  301 (302)
T ss_dssp             EEETT-EEEEE-STTEEEEE
T ss_pred             EcCCC-ceEEECCCcEEEEe
Confidence            76544 34455678887665

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=93.29  E-value=22  Score=43.59  Aligned_cols=155  Identities=9%  Similarity=0.073  Sum_probs=92.4

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEE-------------EEEEcC--CCCEEEEEeC----------CCc
Q 004207          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-------------DVRFSP--SLSRLATSSA----------DRT  620 (768)
Q Consensus       566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~-------------sl~fsp--dg~~LaTgs~----------Dgt  620 (768)
                      ++..|+.++.|+.|.-.|.++++.+..+.. .+.|.             .+.-.|  .+..+++|+.          +|.
T Consensus       259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~  337 (764)
T TIGR03074       259 CARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV  337 (764)
T ss_pred             cCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence            455788888999999999999999877632 22221             111122  1345666643          688


Q ss_pred             EEEEECCCCCeeEEEeecC----------------CCCe-EEEEEeCCCCeEEEEE-----------------eCCCcEE
Q 004207          621 VRVWDTENPDYSLRTFTGH----------------STTV-MSLDFHPSKEDLLCSC-----------------DNNSEIR  666 (768)
Q Consensus       621 IrVWDl~t~~~~~~~~~~h----------------~~~V-~slafsp~g~~lLaSg-----------------s~Dg~I~  666 (768)
                      |+-+|+++++..=....+.                ...+ ..+++++....+++-.                 ...+.|.
T Consensus       338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv  417 (764)
T TIGR03074       338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV  417 (764)
T ss_pred             EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence            9999999988532222110                0111 2334455433332211                 1134677


Q ss_pred             EEECCCCeeEEEEec-CCCe---------eEEEEec-CCC---EEEEEEcCCeEEEEECCCceEeeecc
Q 004207          667 YWSINNGSCAGVFKC-QSGA---------TQMRFQP-RLG---RILAAAIENYISILDVETQVCRLKLQ  721 (768)
Q Consensus       667 iWDl~sg~~i~~~~~-~~~i---------~sl~fsp-~~~---~llags~Dg~I~IwD~~t~~~~~~~~  721 (768)
                      -.|+++|+....+.. ++.+         .-+.+.. ++.   .++.++.+|.++++|.++++.+...+
T Consensus       418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            788899998877764 2221         1122332 442   68888899999999999998776543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.23  E-value=1.3  Score=44.73  Aligned_cols=103  Identities=10%  Similarity=0.011  Sum_probs=55.0

Q ss_pred             CCCEEEEEeCC--CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCe
Q 004207          608 SLSRLATSSAD--RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA  685 (768)
Q Consensus       608 dg~~LaTgs~D--gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i  685 (768)
                      ++.++.+.+.-  ..|++||+++++.....-.. ...+..=-...-++.+..-.-.+|...+||.++.+++..+...+.-
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence            34566665543  37999999987753322221 1111111111123334444455778888888888887777765555


Q ss_pred             eEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207          686 TQMRFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       686 ~sl~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                      ..++...  ..++.+....++..-|.++
T Consensus       134 WgLt~d~--~~LimsdGsatL~frdP~t  159 (262)
T COG3823         134 WGLTSDD--KNLIMSDGSATLQFRDPKT  159 (262)
T ss_pred             eeeecCC--cceEeeCCceEEEecCHHH
Confidence            5554433  2355544444555545443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.20  E-value=3.1  Score=46.42  Aligned_cols=161  Identities=8%  Similarity=-0.024  Sum_probs=80.3

Q ss_pred             CCEEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCCC--Ce-eEEEeecCCCCeEEEEEeCCCCeEEEEEeCC
Q 004207          598 QWITDVRFSPSLSRLATSS-----------ADR-TVRVWDTENP--DY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (768)
Q Consensus       598 ~~V~sl~fspdg~~LaTgs-----------~Dg-tIrVWDl~t~--~~-~~~~~~~h~~~V~slafsp~g~~lLaSgs~D  662 (768)
                      .....|+|.++|+++++-.           ..+ .|.+++-.++  .. ....+.........|+|.+++  +++++ ..
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~-~~   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT-PP   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC-CC
Confidence            3457889999988776643           223 6777765432  21 123444334556889999886  55443 33


Q ss_pred             CcEEEEECCC-C----eeEE---EEec-----CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC--ceEeeecceeEEee
Q 004207          663 SEIRYWSINN-G----SCAG---VFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVET--QVCRLKLQTLELWN  727 (768)
Q Consensus       663 g~I~iWDl~s-g----~~i~---~~~~-----~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t--~~~~~~~~~I~iwd  727 (768)
                      ..+++.|... +    +...   .+..     +.....++|.|++..+++.+..+.-.+-....  .........+..++
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            3333435432 1    2111   1221     23366899999976655544321111000000  00000111234445


Q ss_pred             cCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207          728 MTENKTLTLSAHDKLVSSLAASTVNGMVASASHD  761 (768)
Q Consensus       728 ~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D  761 (768)
                      ...++...+...-.....++|++++.++++-..+
T Consensus       171 pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       171 PDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             cCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence            4444433333222345789999999887764433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PHA03098 kelch-like protein; Provisional

Probab=92.95  E-value=3.6  Score=48.18  Aligned_cols=106  Identities=8%  Similarity=0.023  Sum_probs=52.4

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEEE--EeccCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCCee
Q 004207          566 DGKLLATGGHD-----KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS  632 (768)
Q Consensus       566 dg~~LaSgs~D-----g~I~VWdl~t~~~~~--tl~~h~~~V~sl~fspdg~~LaTgs~D------gtIrVWDl~t~~~~  632 (768)
                      ++++++.||.+     ..+.+||..+.+-..  .+....... +++. -++.+++.|+.+      ..+.+||+.+.+..
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            67777888765     246778876643221  111111111 1222 245666777632      35888998875432


Q ss_pred             EEE-eecCCCCeEEEEEeCCCCeEEEEEeCC--------CcEEEEECCCCeeE
Q 004207          633 LRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCA  676 (768)
Q Consensus       633 ~~~-~~~h~~~V~slafsp~g~~lLaSgs~D--------g~I~iWDl~sg~~i  676 (768)
                      ... ...... -.+++.. + +.+++.|+.+        ..+.+||..+.+..
T Consensus       420 ~~~~~p~~r~-~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~  469 (534)
T PHA03098        420 KGSPLPISHY-GGCAIYH-D-GKIYVIGGISYIDNIKVYNIVESYNPVTNKWT  469 (534)
T ss_pred             ecCCCCcccc-CceEEEE-C-CEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence            111 110111 1122222 2 4566666543        23888898876543

>PHA02790 Kelch-like protein; Provisional

Probab=92.88  E-value=3.2  Score=48.06  Aligned_cols=105  Identities=9%  Similarity=0.063  Sum_probs=52.0

Q ss_pred             CCCEEEEEeCCC-----cEEEEECCCCeEEE--EeccCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCCeeE-EE
Q 004207          566 DGKLLATGGHDK-----KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSL-RT  635 (768)
Q Consensus       566 dg~~LaSgs~Dg-----~I~VWdl~t~~~~~--tl~~h~~~V~sl~fspdg~~LaTgs~D--gtIrVWDl~t~~~~~-~~  635 (768)
                      ++.++++||.++     .+..||..+.+-..  .+.........+.  -++.+.+.|+.+  .++..||..++.... ..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            455667776543     46678877654322  1111111122222  356677777754  357888876554311 11


Q ss_pred             eecCCCCeEEEEEeCCCCeEEEEEeCCC---cEEEEECCCCee
Q 004207          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNGSC  675 (768)
Q Consensus       636 ~~~h~~~V~slafsp~g~~lLaSgs~Dg---~I~iWDl~sg~~  675 (768)
                      +.........+.+   ++.+++.|+.++   .+..||.++..-
T Consensus       349 l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W  388 (480)
T PHA02790        349 LLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQW  388 (480)
T ss_pred             CCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEE
Confidence            1111111122222   245777777543   467788876543

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.82  E-value=7  Score=40.01  Aligned_cols=148  Identities=16%  Similarity=0.201  Sum_probs=81.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC--C---cEEEE-ECCC----CeeEE--
Q 004207          610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--S---EIRYW-SINN----GSCAG--  677 (768)
Q Consensus       610 ~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D--g---~I~iW-Dl~s----g~~i~--  677 (768)
                      ..|+.+...+.|.+|++.........-..--+.|..+.++..|++++..=...  .   .+|+| +.+.    ...++  
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR  108 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR  108 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence            45555567788999999854443333333447899999999988666432221  1   45654 2221    11111  


Q ss_pred             ---------------------EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEe
Q 004207          678 ---------------------VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTL  736 (768)
Q Consensus       678 ---------------------~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l  736 (768)
                                           .+.....+.+++.-|..+.|++|+. +++.+|.+......  ...+.+.|+....   +
T Consensus       109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~--~~~~~~lDFe~~l---~  182 (215)
T PF14761_consen  109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQ--SEKFSFLDFERSL---I  182 (215)
T ss_pred             EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEe--cccccEEechhhh---h
Confidence                                 1112334667777777777777654 67888877654331  1123333433111   1


Q ss_pred             ccCCC-CeeEEEEeCCCCEEEEEECCCcEEE
Q 004207          737 SAHDK-LVSSLAASTVNGMVASASHDKCVKI  766 (768)
Q Consensus       737 ~~H~~-~I~sla~spdg~~LaSgs~DG~V~I  766 (768)
                      .-|.+ .+..+++.  ++|||..+.. .++|
T Consensus       183 ~~~~~~~p~~v~ic--~~yiA~~s~~-ev~V  210 (215)
T PF14761_consen  183 DHIDNFKPTQVAIC--EGYIAVMSDL-EVLV  210 (215)
T ss_pred             heecCceEEEEEEE--eeEEEEecCC-EEEE
Confidence            12222 25667777  7788887765 4444

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=92.63  E-value=3  Score=39.42  Aligned_cols=113  Identities=12%  Similarity=0.074  Sum_probs=75.1

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCC-------eeEEEeecCCCCeEEEEEeC----CCCeEEEEEeCCCcEEEEE
Q 004207          601 TDVRFSPSLSRLATSSADRTVRVWDTENPD-------YSLRTFTGHSTTVMSLDFHP----SKEDLLCSCDNNSEIRYWS  669 (768)
Q Consensus       601 ~sl~fspdg~~LaTgs~DgtIrVWDl~t~~-------~~~~~~~~h~~~V~slafsp----~g~~lLaSgs~Dg~I~iWD  669 (768)
                      ..-+|......|++++.-|.|.|++.....       ..+..+. -...|++|+--+    ++..+|+.|+ ...|..||
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYD   79 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD   79 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence            344666666678888889999999876432       1233343 345788886544    3455776777 55899999


Q ss_pred             CCCCeeEEEEecCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCce
Q 004207          670 INNGSCAGVFKCQSGATQMRFQPR---LGRILAAAIENYISILDVETQV  715 (768)
Q Consensus       670 l~sg~~i~~~~~~~~i~sl~fsp~---~~~llags~Dg~I~IwD~~t~~  715 (768)
                      +....-+..-....++.++.+-.-   ..-++..+.+..|.-||.+..+
T Consensus        80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e  128 (136)
T PF14781_consen   80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE  128 (136)
T ss_pred             cccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence            988776665556688888877322   2346666666778888876644

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=92.51  E-value=17  Score=38.88  Aligned_cols=185  Identities=10%  Similarity=0.056  Sum_probs=102.7

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      .+.++....++.-+++++..+...++                ++..+.- .+.-.++..  .|++..++..|.-+.+.|+
T Consensus        95 se~yvyvad~ssGL~IvDIS~P~sP~----------------~~~~lnt-~gyaygv~v--sGn~aYVadlddgfLivdv  155 (370)
T COG5276          95 SEEYVYVADWSSGLRIVDISTPDSPT----------------LIGFLNT-DGYAYGVYV--SGNYAYVADLDDGFLIVDV  155 (370)
T ss_pred             cccEEEEEcCCCceEEEeccCCCCcc----------------eeccccC-CceEEEEEe--cCCEEEEeeccCcEEEEEC
Confidence            34555555666777877665443221                1111111 133445555  6888888886666788887


Q ss_pred             CCCe---EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCC-CeEEEEEeCCCCeEEEEEe
Q 004207          585 ESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDLLCSCD  660 (768)
Q Consensus       585 ~t~~---~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~-~V~slafsp~g~~lLaSgs  660 (768)
                      .+..   +...+......-..++.+  |++-+.+.+|+-+.|-|+..+..+...-.-..+ .+.++..+++.. +++.. 
T Consensus       156 sdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~vvy-  231 (370)
T COG5276         156 SDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YLVVY-  231 (370)
T ss_pred             CCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee-EEEEc-
Confidence            6532   334444444445667776  778888889999999999876654332222223 677777776532 33333 


Q ss_pred             CCCcEEEEECCCCeeEEEEe---cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207          661 NNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       661 ~Dg~I~iWDl~sg~~i~~~~---~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                       +--+.+-|..+.+....+.   ....+..-.|.-.+++.+.+..+..+.+.|+.+
T Consensus       232 -~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn  286 (370)
T COG5276         232 -DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN  286 (370)
T ss_pred             -ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccC
Confidence             3457777877655333332   222221112333344555555555555555543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=92.40  E-value=0.38  Score=36.98  Aligned_cols=31  Identities=16%  Similarity=0.354  Sum_probs=28.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          597 TQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (768)
Q Consensus       597 ~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~  627 (768)
                      ...|.+++|+|...+||.++.||.|.||.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3569999999999999999999999999984

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=92.37  E-value=16  Score=43.58  Aligned_cols=159  Identities=18%  Similarity=0.168  Sum_probs=88.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--Eecc-CCC-CEEEEEEcC------CCCEEEEEeC-CC---c
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEE-HTQ-WITDVRFSP------SLSRLATSSA-DR---T  620 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~--tl~~-h~~-~V~sl~fsp------dg~~LaTgs~-Dg---t  620 (768)
                      .+.|..|.|.++++.+++...+|.|.+||...+....  .+.. +.. -+++ +|-+      ...++++.+. ++   .
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~  207 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS  207 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Confidence            6779999999999999999999999999983322221  2211 111 1111 2222      2345555554 32   5


Q ss_pred             EEEEECCCCCeeEEEee---cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCee-----EEEEe-
Q 004207          621 VRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-----QMRFQ-  691 (768)
Q Consensus       621 IrVWDl~t~~~~~~~~~---~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~-----sl~fs-  691 (768)
                      .+++.+......+..+.   .+........|+...+.++.-  .+++|.+|++.+.+...++.....+.     .+.+. 
T Consensus       208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~  285 (670)
T PF10395_consen  208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP  285 (670)
T ss_pred             EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence            77888722121122221   222233344444433434433  57899999999888887776532221     12332 


Q ss_pred             cCCCEEEEEEcCCeEEEEECCCceEe
Q 004207          692 PRLGRILAAAIENYISILDVETQVCR  717 (768)
Q Consensus       692 p~~~~llags~Dg~I~IwD~~t~~~~  717 (768)
                      |..++++ -+.++.|++.|+.-....
T Consensus       286 ~s~nRvL-Ls~~nkIyLld~~~~siL  310 (670)
T PF10395_consen  286 PSPNRVL-LSVNNKIYLLDLKFESIL  310 (670)
T ss_pred             CCCCeEE-EEcCCEEEEEeehhhhhh
Confidence            2223333 345688999998655443

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=92.21  E-value=18  Score=38.40  Aligned_cols=153  Identities=13%  Similarity=0.034  Sum_probs=99.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee
Q 004207          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~  637 (768)
                      -..++-.+||...+++...+.|--.|-.+++....-.+....-..|..-||+..-+|-+.. .|.-.|-++.+.....+.
T Consensus        64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp  142 (353)
T COG4257          64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP  142 (353)
T ss_pred             ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence            4567778899999999888889889999999887666666667788888998877665444 566667666554332222


Q ss_pred             --cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207          638 --GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       638 --~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                        .-........|.+.|. +.+++.. |.---.|-. ...+.++..  ......||..|+|...++.-.++.|...|..+
T Consensus       143 ~~~a~~nlet~vfD~~G~-lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~  219 (353)
T COG4257         143 LEHADANLETAVFDPWGN-LWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA  219 (353)
T ss_pred             cccCCCcccceeeCCCcc-EEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence              2245677888999987 4446642 211111111 122333332  34567788889888887777777777777655


Q ss_pred             c
Q 004207          714 Q  714 (768)
Q Consensus       714 ~  714 (768)
                      .
T Consensus       220 ~  220 (353)
T COG4257         220 G  220 (353)
T ss_pred             C
Confidence            4

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=92.07  E-value=13  Score=40.41  Aligned_cols=107  Identities=8%  Similarity=0.089  Sum_probs=51.7

Q ss_pred             CCCEEEEEeCCC-----cEEEEECCCCeE---EEEeccCCCCE--EEEEEcCCCCEEEEEeC-----CCcEEEEECCCCC
Q 004207          566 DGKLLATGGHDK-----KAVLWCTESFTV---KSTLEEHTQWI--TDVRFSPSLSRLATSSA-----DRTVRVWDTENPD  630 (768)
Q Consensus       566 dg~~LaSgs~Dg-----~I~VWdl~t~~~---~~tl~~h~~~V--~sl~fspdg~~LaTgs~-----DgtIrVWDl~t~~  630 (768)
                      ++.+++.|+.++     .+..||+.+.+-   ...+..-..+.  .+++.. ++++.+.|+.     ...+.+||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            566777777543     466777766542   11221111111  122222 4566666664     2368888988765


Q ss_pred             eeEE-EeecCCCCeEEEEEeCCCCeEEEEEeCCC----cEEEEECCCCee
Q 004207          631 YSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSC  675 (768)
Q Consensus       631 ~~~~-~~~~h~~~V~slafsp~g~~lLaSgs~Dg----~I~iWDl~sg~~  675 (768)
                      .... .+... ......+..-+ +.+++.|+.++    .+.+||.++.+-
T Consensus       151 W~~~~~~p~~-~r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       151 WFELPDFPGE-PRVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             eeECCCCCCC-CCCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCee
Confidence            4221 11111 11111221222 45777777653    356788876553

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK13684 Ycf48-like protein; Provisional

Probab=91.63  E-value=25  Score=38.76  Aligned_cols=152  Identities=11%  Similarity=0.092  Sum_probs=79.6

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEE-EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee
Q 004207          597 TQWITDVRFSPSLSRLATSSADRTVRV-WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  675 (768)
Q Consensus       597 ~~~V~sl~fspdg~~LaTgs~DgtIrV-WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~  675 (768)
                      ...+.++.+.+++.+++++ ..|.+.. +|-. ++.-......-...++++.+.+++. +++++ ..|.+++=+...+..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence            4568899999988766555 4554432 2222 1211122223456789999999876 44344 456665323343332


Q ss_pred             EEEEec-----CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeC
Q 004207          676 AGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAST  750 (768)
Q Consensus       676 i~~~~~-----~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~sp  750 (768)
                      -.....     ...+..+.+.+++. +++++.+|.|.. ....++.         |.....    ...-....+.+.|..
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~-S~d~G~t---------W~~~~~----~~~~~~~~~~~~~~~  312 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLLV-SKDGGKT---------WEKDPV----GEEVPSNFYKIVFLD  312 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCC-EEEEcCCCeEEE-eCCCCCC---------CeECCc----CCCCCcceEEEEEeC
Confidence            222111     23467788888755 566666775543 2222211         111000    001123467777776


Q ss_pred             CCCEEEEEECCCcEEEeC
Q 004207          751 VNGMVASASHDKCVKIWK  768 (768)
Q Consensus       751 dg~~LaSgs~DG~V~IWD  768 (768)
                      ++..++ .+..|.|..|+
T Consensus       313 ~~~~~~-~G~~G~il~~~  329 (334)
T PRK13684        313 PEKGFV-LGQRGVLLRYV  329 (334)
T ss_pred             CCceEE-ECCCceEEEec
Confidence            666555 55667776653

>PRK13684 Ycf48-like protein; Provisional

Probab=91.63  E-value=7.5  Score=42.80  Aligned_cols=150  Identities=13%  Similarity=0.080  Sum_probs=83.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl-~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~  633 (768)
                      ...+.++.+.+++.+++++ ..|.+..-....++.-..+ ..-...++++.+.++++.++++ ..|.+++=..+.+.. -
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s-W  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES-W  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc-c
Confidence            4578999999988777665 4565443211222212112 2334578999999998876665 567664323333321 1


Q ss_pred             EEeec----CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----cCCCeeEEEEecCCCEEEEEEcCCe
Q 004207          634 RTFTG----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRLGRILAAAIENY  705 (768)
Q Consensus       634 ~~~~~----h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~----~~~~i~sl~fsp~~~~llags~Dg~  705 (768)
                      .....    ....+.++.+.+++. +++++ .+|.|. .....++.-....    .......+.|..++ ..++++..|.
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~-~~~~~G~~G~  324 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGE-IWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPE-KGFVLGQRGV  324 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCC-EEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCC-ceEEECCCce
Confidence            11111    123578899998765 55444 466554 4444444333222    12346677776653 5567777888


Q ss_pred             EEEEEC
Q 004207          706 ISILDV  711 (768)
Q Consensus       706 I~IwD~  711 (768)
                      |..|+-
T Consensus       325 il~~~~  330 (334)
T PRK13684        325 LLRYVG  330 (334)
T ss_pred             EEEecC
Confidence            877754

>PHA02790 Kelch-like protein; Provisional

Probab=91.40  E-value=8.9  Score=44.45  Aligned_cols=104  Identities=9%  Similarity=0.027  Sum_probs=51.9

Q ss_pred             CCCEEEEEeCCC--cEEEEECCCCeEE--EEeccCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCCeeEEEeec
Q 004207          566 DGKLLATGGHDK--KAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTG  638 (768)
Q Consensus       566 dg~~LaSgs~Dg--~I~VWdl~t~~~~--~tl~~h~~~V~sl~fspdg~~LaTgs~Dg---tIrVWDl~t~~~~~~~~~~  638 (768)
                      ++.+.++||.++  .+..||..+.+-.  ..+.........+.  -++.+.+.|+.++   .+..||.++..........
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~  395 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY  395 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence            677778887643  5777886654322  12211111112222  2466777777654   4778888765532211111


Q ss_pred             CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeE
Q 004207          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA  676 (768)
Q Consensus       639 h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i  676 (768)
                      ....-.+++..  ++.+++.|+   .+.+||.++.+-.
T Consensus       396 ~~r~~~~~~~~--~~~IYv~GG---~~e~ydp~~~~W~  428 (480)
T PHA02790        396 YPHYKSCALVF--GRRLFLVGR---NAEFYCESSNTWT  428 (480)
T ss_pred             CccccceEEEE--CCEEEEECC---ceEEecCCCCcEe
Confidence            11111122222  245666664   5778888765443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.26  E-value=5.5  Score=47.74  Aligned_cols=112  Identities=15%  Similarity=0.143  Sum_probs=74.7

Q ss_pred             eEEEEEcC--CCCEEEEEeCCCcEEEEECCC-------C-------------eEEEEeccCCCCEEEEEEc--CCCCEEE
Q 004207          558 VESCHFSP--DGKLLATGGHDKKAVLWCTES-------F-------------TVKSTLEEHTQWITDVRFS--PSLSRLA  613 (768)
Q Consensus       558 I~sl~fSp--dg~~LaSgs~Dg~I~VWdl~t-------~-------------~~~~tl~~h~~~V~sl~fs--pdg~~La  613 (768)
                      |+-|....  +...|+.|..||.|.+|.+++       .             ++...+. -...++.++++  ...++||
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence            55555544  455799999999999996532       0             0112222 23468999998  7778888


Q ss_pred             EEeCCCcEEEEECCC--CCeeEEEeecCCCCeEEEEEeCCC-----CeEEEEEeCCCcEEEEEC
Q 004207          614 TSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSI  670 (768)
Q Consensus       614 Tgs~DgtIrVWDl~t--~~~~~~~~~~h~~~V~slafsp~g-----~~lLaSgs~Dg~I~iWDl  670 (768)
                      +++....|.||-+..  .+.....-..|...|.+|+|.++.     ...+++++-.|.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            888888888876543  221111122366779999997754     236778888999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C

Probab=91.26  E-value=0.06  Score=57.26  Aligned_cols=14  Identities=36%  Similarity=0.572  Sum_probs=0.0

Q ss_pred             HHhhcccccCCCCC
Q 004207          121 QQQQRRDSTQHLND  134 (768)
Q Consensus       121 qq~q~~~~~~~~~~  134 (768)
                      ||+++..+.+.+||
T Consensus       371 QQ~qQ~qQq~qmng  384 (468)
T PF11498_consen  371 QQQQQQQQQHQMNG  384 (468)
T ss_dssp             --------------
T ss_pred             HHHHhhhhhhhccc
Confidence            34444455566786

elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=90.77  E-value=6  Score=44.92  Aligned_cols=29  Identities=10%  Similarity=0.376  Sum_probs=23.7

Q ss_pred             CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          740 DKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       740 ~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +..|.++++.+..+.|++.+.+|.|.+||
T Consensus       189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~  217 (422)
T PF08801_consen  189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWD  217 (422)
T ss_dssp             ---EEEEEEETTTTEEEEEESSE-EEEEE
T ss_pred             hhceeeEEecCCcCEEEEEeCCCcEEEEE
Confidence            34499999999999999999999999996

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.45  E-value=6.8  Score=47.01  Aligned_cols=104  Identities=10%  Similarity=0.097  Sum_probs=65.2

Q ss_pred             CCeEEEEEeCCCcEEEEECCC-------C-------------eeEEEEecCCCeeEEEEe--cCCCEEEEEEcCCeEEEE
Q 004207          652 KEDLLCSCDNNSEIRYWSINN-------G-------------SCAGVFKCQSGATQMRFQ--PRLGRILAAAIENYISIL  709 (768)
Q Consensus       652 g~~lLaSgs~Dg~I~iWDl~s-------g-------------~~i~~~~~~~~i~sl~fs--p~~~~llags~Dg~I~Iw  709 (768)
                      +..+|+.|.+||.|.+|.+++       .             ++...+..+..+..++++  ...+.|++++....|.||
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            356888999999999996531       0             122334446678889998  665666666667777776


Q ss_pred             ECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC---C---EEEEEECCCcEEEeC
Q 004207          710 DVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN---G---MVASASHDKCVKIWK  768 (768)
Q Consensus       710 D~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg---~---~LaSgs~DG~V~IWD  768 (768)
                      -..........             ..-..|...|-+|+|-++.   .   +|++++-.|.|.+|+
T Consensus       193 af~l~~~r~~~-------------~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~  244 (717)
T PF08728_consen  193 AFALVDERFYH-------------VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK  244 (717)
T ss_pred             EEecccccccc-------------ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence            55432110000             0011245568888887654   2   778888899888874

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.43  E-value=9.3  Score=46.42  Aligned_cols=74  Identities=18%  Similarity=0.267  Sum_probs=49.5

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCCe--eEEEe--------ecCCCCeEEEEEeCCC---CeE
Q 004207          598 QWITDVRFSPSLSRLATSSADRTVRVWDTE---------NPDY--SLRTF--------TGHSTTVMSLDFHPSK---EDL  655 (768)
Q Consensus       598 ~~V~sl~fspdg~~LaTgs~DgtIrVWDl~---------t~~~--~~~~~--------~~h~~~V~slafsp~g---~~l  655 (768)
                      ..|..|.++|+|++|+..|..|.+.+.=.+         .++.  ..+++        ..+...|..+.|||.+   .++
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            468899999999999999887744333222         1111  11221        1345678999999974   444


Q ss_pred             EEEEeCCCcEEEEECCC
Q 004207          656 LCSCDNNSEIRYWSINN  672 (768)
Q Consensus       656 LaSgs~Dg~I~iWDl~s  672 (768)
                      + +-..|++||+||+..
T Consensus       165 ~-vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  165 V-VLTSDNTLRLYDISD  180 (717)
T ss_pred             E-EEecCCEEEEEecCC
Confidence            4 556699999999975

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.30  E-value=5.5  Score=40.73  Aligned_cols=112  Identities=8%  Similarity=0.145  Sum_probs=66.9

Q ss_pred             CeEEEEEeCCCcEEEEECC--CCeeEEEEecCCCeeEEEEecCCCEEEEEEcCC------eEEEE-ECCCceEeeeccee
Q 004207          653 EDLLCSCDNNSEIRYWSIN--NGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN------YISIL-DVETQVCRLKLQTL  723 (768)
Q Consensus       653 ~~lLaSgs~Dg~I~iWDl~--sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg------~I~Iw-D~~t~~~~~~~~~I  723 (768)
                      +.+|++ ...+.|.+|++.  .......|..-+.|..+.++..|+|+++--.++      .+++| +++........-.+
T Consensus        29 d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVA-ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEE-cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            345443 456789999998  345667888888999999999999999875432      45554 33222111000012


Q ss_pred             EEee----------cC-CCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          724 ELWN----------MT-ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       724 ~iwd----------~~-~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      ++-.          .. .-.++++ .-...+.+++..|-.+-|+.|+.+ ++.||
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiEl-Pl~~~p~ciaCC~~tG~LlVg~~~-~l~lf  160 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIEL-PLSEPPLCIACCPVTGNLLVGCGN-KLVLF  160 (215)
T ss_pred             EEcccccccCCCCccccceEEEEe-cCCCCCCEEEecCCCCCEEEEcCC-EEEEE
Confidence            2211          00 0112233 235678899988877777777654 66666

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=89.97  E-value=12  Score=38.86  Aligned_cols=133  Identities=12%  Similarity=0.133  Sum_probs=76.1

Q ss_pred             CeEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEEC
Q 004207          557 KVESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDT  626 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~D---------g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~La-Tgs~DgtIrVWDl  626 (768)
                      +.+.-..+|+|++++-.-.|         |.++.|-..  ..+..+...-.--+.++|+.+.+.+. +-+.+-+|.-||.
T Consensus       110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy  187 (310)
T KOG4499|consen  110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY  187 (310)
T ss_pred             ccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence            34455568899985432222         233444321  11222222223335788988766554 4455678877884


Q ss_pred             --CCCCe----eEEEeec----CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEec
Q 004207          627 --ENPDY----SLRTFTG----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQP  692 (768)
Q Consensus       627 --~t~~~----~~~~~~~----h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp  692 (768)
                        .++..    .+..+..    ..-..-.++...+|. +++++-..++|..+|..+|+.+.+++. ...+++++|--
T Consensus       188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence              44321    1222211    011122344455554 666777789999999999999999987 45588999854

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=89.62  E-value=45  Score=39.91  Aligned_cols=121  Identities=13%  Similarity=0.162  Sum_probs=64.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE--EEeecCCC------CeEEEEEeCCCCeEEEEEe-CC--CcE
Q 004207          597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHST------TVMSLDFHPSKEDLLCSCD-NN--SEI  665 (768)
Q Consensus       597 ~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~--~~~~~h~~------~V~slafsp~g~~lLaSgs-~D--g~I  665 (768)
                      .+.|..|.|..+++.+++...+|.|.+||...+....  ..-..+..      .|...........+|+.+. .+  -..
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            5679999999999999999999999999993322111  11111221      2222221122344454444 22  346


Q ss_pred             EEEEC--CCCeeEEEE---ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEee
Q 004207          666 RYWSI--NNGSCAGVF---KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL  718 (768)
Q Consensus       666 ~iWDl--~sg~~i~~~---~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~  718 (768)
                      +++.+  +...+...-   ..........|....+.++.- .++.|.+|++.......
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~  265 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQK  265 (670)
T ss_pred             EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEE
Confidence            67777  322222221   112223333444334555444 66788888887765443

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.60  E-value=22  Score=39.50  Aligned_cols=147  Identities=10%  Similarity=0.047  Sum_probs=80.8

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCC-CC
Q 004207          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TT  642 (768)
Q Consensus       566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~--~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~-~~  642 (768)
                      ++ .++++..||.|.-.|.++++.+.....-.  ..+.+-.+..+|+ |+.++.++.++.+|.+++.. +-...... ..
T Consensus        68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~-~W~~~~~~~~~  144 (370)
T COG1520          68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTL-VWSRNVGGSPY  144 (370)
T ss_pred             CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcE-EEEEecCCCeE
Confidence            44 44455778888888988888765433221  2222222333555 77888899899999987775 33333222 11


Q ss_pred             eEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCe-eEEEE--ecCCCEEEEEEc--CCeEEEEECCCceEe
Q 004207          643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRF--QPRLGRILAAAI--ENYISILDVETQVCR  717 (768)
Q Consensus       643 V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i-~sl~f--sp~~~~llags~--Dg~I~IwD~~t~~~~  717 (768)
                      +..-..-.++  .+..++.++.+...|..++...........+ ..+..  ......++.+..  ++.+.-+|..++...
T Consensus       145 ~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~  222 (370)
T COG1520         145 YASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLK  222 (370)
T ss_pred             EecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEe
Confidence            2222222232  3334446789999999888887765543210 00000  122334555554  556666676665443

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=89.09  E-value=11  Score=39.54  Aligned_cols=141  Identities=13%  Similarity=0.153  Sum_probs=74.5

Q ss_pred             EEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCC-C-CeeEEEe---ecCCCCeEEEEEeC
Q 004207          579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTEN-P-DYSLRTF---TGHSTTVMSLDFHP  650 (768)
Q Consensus       579 I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D---gtIrVWDl~t-~-~~~~~~~---~~h~~~V~slafsp  650 (768)
                      -.+||+.+.+....-....-...+-.|-+||++|.+|+..   ..|++++... . .+.....   ......-.++...+
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            4578888766543222222233344578899999998762   3588888654 1 1100000   11223334455567


Q ss_pred             CCCeEEEEEeCCCcEEEEECCC-CeeEEEEec--------C-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeec
Q 004207          651 SKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC--------Q-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL  720 (768)
Q Consensus       651 ~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~~--------~-~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~  720 (768)
                      ||+.+++.|....+..+|.-+. ......+..        . .--..+...|+|+.++.+..+.  .|||..+.+.+..+
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL  205 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence            8886665555555566666432 111111110        0 1122466688888777776654  45687776554443


Q ss_pred             c
Q 004207          721 Q  721 (768)
Q Consensus       721 ~  721 (768)
                      .
T Consensus       206 P  206 (243)
T PF07250_consen  206 P  206 (243)
T ss_pred             C
Confidence            3

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=89.02  E-value=4.5  Score=45.77  Aligned_cols=88  Identities=15%  Similarity=0.087  Sum_probs=63.8

Q ss_pred             CceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEc----CCCC-------
Q 004207          542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS----PSLS-------  610 (768)
Q Consensus       542 ~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fs----pdg~-------  610 (768)
                      .........+......+.+|+.+|++.+.|+...=|+|.++|+.++..++.+++-.+.=  +.|.    ...+       
T Consensus       294 ~~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~  371 (415)
T PF14655_consen  294 AAPLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNS  371 (415)
T ss_pred             CcccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccc
Confidence            34455566777888889999999999999998888999999999999988888765531  2221    1111       


Q ss_pred             ----------EEEEEeCCCcEEEEECCCCCe
Q 004207          611 ----------RLATSSADRTVRVWDTENPDY  631 (768)
Q Consensus       611 ----------~LaTgs~DgtIrVWDl~t~~~  631 (768)
                                +++-+-.-|.|.||.++++..
T Consensus       372 ~~~~~~~~l~LvIyaprRg~lEvW~~~~g~R  402 (415)
T PF14655_consen  372 PKSSSRFALFLVIYAPRRGILEVWSMRQGPR  402 (415)
T ss_pred             cCCCCcceEEEEEEeccCCeEEEEecCCCCE
Confidence                      234455677888888887654

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=88.92  E-value=30  Score=39.09  Aligned_cols=143  Identities=8%  Similarity=0.067  Sum_probs=79.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEE-EEECCCCeE--EEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe---
Q 004207          558 VESCHFSPDGKLLATGGHDKKAV-LWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---  631 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~Dg~I~-VWdl~t~~~--~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~---  631 (768)
                      ...+..++|+.+++.+.. |.+. -||  .+..  ...-......++++.|.+++..++++ .+|.|. |..+.+..   
T Consensus       241 f~~v~~~~dG~~~~vg~~-G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~  315 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSR-GNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEED  315 (398)
T ss_pred             eeeEEEcCCCCEEEEECC-ccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccc
Confidence            555667788877777654 4433 343  2221  11112234568999999998877665 566553 33333321   


Q ss_pred             -eEEEeec--CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----cCCCeeEEEEecCCCEEEEEEcCC
Q 004207          632 -SLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRLGRILAAAIEN  704 (768)
Q Consensus       632 -~~~~~~~--h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~----~~~~i~sl~fsp~~~~llags~Dg  704 (768)
                       .......  ....++++.|.+++. ++++| .+|.|.... ..|+.-....    .......+.|.++ +..++.+.+|
T Consensus       316 ~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~-~~g~~~G~~G  391 (398)
T PLN00033        316 FDFEEADIKSRGFGILDVGYRSKKE-AWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDD-KKGFVLGNDG  391 (398)
T ss_pred             cceeecccCCCCcceEEEEEcCCCc-EEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCC-CceEEEeCCc
Confidence             1121111  123588999988755 55444 467665543 3344322222    1355778888776 4566777788


Q ss_pred             eEEEE
Q 004207          705 YISIL  709 (768)
Q Consensus       705 ~I~Iw  709 (768)
                      .|.-|
T Consensus       392 ~il~~  396 (398)
T PLN00033        392 VLLRY  396 (398)
T ss_pred             EEEEe
Confidence            77654

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=88.91  E-value=23  Score=43.70  Aligned_cols=120  Identities=15%  Similarity=0.239  Sum_probs=71.7

Q ss_pred             cCCCCEEEEEEc---C----CCCEEEEEeCCCcEEEEECC------CCC--------eeEEEeec---CCCCeEEEEEeC
Q 004207          595 EHTQWITDVRFS---P----SLSRLATSSADRTVRVWDTE------NPD--------YSLRTFTG---HSTTVMSLDFHP  650 (768)
Q Consensus       595 ~h~~~V~sl~fs---p----dg~~LaTgs~DgtIrVWDl~------t~~--------~~~~~~~~---h~~~V~slafsp  650 (768)
                      ....+|..|+|.   .    ..++|++ -....+.|+...      ...        .++..+..   ...+..+++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            356788999987   2    1234444 445566777621      100        11222221   234678899999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCC------eeE------EEE-e---cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004207          651 SKEDLLCSCDNNSEIRYWSINNG------SCA------GVF-K---CQSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (768)
Q Consensus       651 ~g~~lLaSgs~Dg~I~iWDl~sg------~~i------~~~-~---~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~  714 (768)
                      ....-||+.+..|...|||+...      ...      ..+ .   .......+.|.++.+.|++++. ..+.++|+++.
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~  234 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN  234 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence            88888999999999999999211      110      111 0   0122346788777676666654 45778888776


Q ss_pred             eE
Q 004207          715 VC  716 (768)
Q Consensus       715 ~~  716 (768)
                      ..
T Consensus       235 ~~  236 (765)
T PF10214_consen  235 WQ  236 (765)
T ss_pred             Cc
Confidence            44

These proteins are found in fungi.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=88.82  E-value=31  Score=42.46  Aligned_cols=80  Identities=11%  Similarity=-0.091  Sum_probs=52.2

Q ss_pred             CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceE-------EeccCCCCeeEEEEeCCCCE
Q 004207          682 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTL-------TLSAHDKLVSSLAASTVNGM  754 (768)
Q Consensus       682 ~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~-------~l~~H~~~I~sla~spdg~~  754 (768)
                      ...|.++....-+..++.+..||+|.++|..+.+......   .-+.....+.       .+ .+-..+..++|||.+.-
T Consensus       259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~---~~~~~~~~v~s~~~~Gf~f-p~~~~~~~vafSPt~c~  334 (753)
T PF11635_consen  259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETR---TNGEPPNTVTSLFQAGFHF-PCIQPPLHVAFSPTMCS  334 (753)
T ss_pred             CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccc---cccCCcccccccccccccc-ccCCCCceEEECcccce
Confidence            3456777777777788999999999999998875543320   0000011011       11 22225667999999999


Q ss_pred             EEEEECCCcEE
Q 004207          755 VASASHDKCVK  765 (768)
Q Consensus       755 LaSgs~DG~V~  765 (768)
                      ++.-..||.+.
T Consensus       335 ~v~~~~~~~~~  345 (753)
T PF11635_consen  335 LVQIDEDGKTK  345 (753)
T ss_pred             EEEEecCCCce
Confidence            99999988854

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=88.43  E-value=5.3  Score=45.20  Aligned_cols=91  Identities=15%  Similarity=0.162  Sum_probs=62.9

Q ss_pred             EEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCe-EEEEEeCC-----------------
Q 004207          590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-MSLDFHPS-----------------  651 (768)
Q Consensus       590 ~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V-~slafsp~-----------------  651 (768)
                      ...+......+.+|+.+|++++.++...-|.|.++|+.++.. ++.++|..+.= .-+.....                 
T Consensus       300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v-vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~  378 (415)
T PF14655_consen  300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV-VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF  378 (415)
T ss_pred             EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh-hhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence            344555556789999999999988888889999999998654 66676654321 11111111                 


Q ss_pred             CCeEEEEEeCCCcEEEEECCCCeeEEEEec
Q 004207          652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKC  681 (768)
Q Consensus       652 g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~  681 (768)
                      ...|++-.-.-|.|.||++++|..+..+..
T Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             eEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence            113444566789999999999988887764

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.23  E-value=2  Score=31.24  Aligned_cols=41  Identities=5%  Similarity=0.067  Sum_probs=32.8

Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEE
Q 004207          650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRF  690 (768)
Q Consensus       650 p~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~f  690 (768)
                      |+++.+++++..++.|.++|..+++.+..+........++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            56778888888899999999999998888877555555555

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=88.21  E-value=25  Score=38.64  Aligned_cols=101  Identities=17%  Similarity=0.202  Sum_probs=55.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEe----ccCCCCEEEEEEcCC---CCEEEEEeC-C--------
Q 004207          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTL----EEHTQWITDVRFSPS---LSRLATSSA-D--------  618 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~---~~tl----~~h~~~V~sl~fspd---g~~LaTgs~-D--------  618 (768)
                      -++|+|.|||++|++ ...|.|++++ ..+..   +..+    ......+..++|+|+   ..+|++... .        
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            578999999987765 5699999999 34443   2222    123456899999994   334433332 1        


Q ss_pred             CcEEEEECCCCC-------eeEEEeec---CCCCeEEEEEeCCCCeEEEEEe
Q 004207          619 RTVRVWDTENPD-------YSLRTFTG---HSTTVMSLDFHPSKEDLLCSCD  660 (768)
Q Consensus       619 gtIrVWDl~t~~-------~~~~~~~~---h~~~V~slafsp~g~~lLaSgs  660 (768)
                      ..|.-|......       ..+..+..   .......|.|.|+|..++.+|+
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence            234444444331       11122222   2344577999999854444443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.00  E-value=3  Score=43.09  Aligned_cols=73  Identities=15%  Similarity=0.185  Sum_probs=51.0

Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCCeeEEE------ee-------cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC
Q 004207          605 FSPSLSRLATSSADRTVRVWDTENPDYSLRT------FT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (768)
Q Consensus       605 fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~------~~-------~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~  671 (768)
                      +..++.+|++.+.+|.+++||+.+.+..+..      +.       .....|..+.++.+|.-++ +-+ +|..+.||..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV-~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIV-TLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEE-EEe-CCCEEEeccc
Confidence            4446789999999999999999987653322      22       3456788888887776444 444 5788999877


Q ss_pred             CCeeEEEE
Q 004207          672 NGSCAGVF  679 (768)
Q Consensus       672 sg~~i~~~  679 (768)
                      -+.-+...
T Consensus        96 L~~W~~vs  103 (219)
T PF07569_consen   96 LGCWIRVS  103 (219)
T ss_pred             cceeEEec
Confidence            65554443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=87.94  E-value=2.8  Score=43.32  Aligned_cols=65  Identities=11%  Similarity=0.079  Sum_probs=46.0

Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------c-------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207          563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------E-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (768)
Q Consensus       563 fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl-------~-------~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t  628 (768)
                      +..++.+|++...+|.+++||+.+.+.+..-       .       .....|..+.++.+|.-|++-+ +|..+.|+.+-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            3447889999999999999999998765332       1       2345677777777776666654 46677777653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=87.42  E-value=49  Score=36.22  Aligned_cols=142  Identities=12%  Similarity=0.186  Sum_probs=83.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCc------EEEEECCC--C--e---EE--EEeccCCC--------CEEEEEEcCCCCEE
Q 004207          556 SKVESCHFSPDGKLLATGGHDKK------AVLWCTES--F--T---VK--STLEEHTQ--------WITDVRFSPSLSRL  612 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~------I~VWdl~t--~--~---~~--~tl~~h~~--------~V~sl~fspdg~~L  612 (768)
                      +.+..|.+.+++..+++.+.+|.      +..+++..  .  .   ..  ..+....+        ...+|++.+++.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            45788999876666666777777      66555443  1  1   11  11111111        34578887788888


Q ss_pred             EEEeCC------CcEEEEECCCCCeeEEEe---------------ecCCCCeEEEEEeCCCCeEEEEEe----CCC--c-
Q 004207          613 ATSSAD------RTVRVWDTENPDYSLRTF---------------TGHSTTVMSLDFHPSKEDLLCSCD----NNS--E-  664 (768)
Q Consensus       613 aTgs~D------gtIrVWDl~t~~~~~~~~---------------~~h~~~V~slafsp~g~~lLaSgs----~Dg--~-  664 (768)
                      ++.-.+      ..|+.++.+ +.. +..+               ...+..+-+|+++|+|..++++.-    .|+  . 
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~-~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRV-IRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-Ccc-cceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            887777      788888876 332 1111               123456899999999986664321    122  1 


Q ss_pred             ------EEE--EECCC-CeeEEE----Ee------cCCCeeEEEEecCCCEEEE
Q 004207          665 ------IRY--WSINN-GSCAGV----FK------CQSGATQMRFQPRLGRILA  699 (768)
Q Consensus       665 ------I~i--WDl~s-g~~i~~----~~------~~~~i~sl~fsp~~~~lla  699 (768)
                            +++  ||..+ +.....    +.      ....+..+.+.+++..++.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                  444  55554 322222    22      2355788889998775544

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=87.13  E-value=53  Score=38.09  Aligned_cols=197  Identities=13%  Similarity=0.111  Sum_probs=94.4

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCC---EEEEEEcCCCCEEEEEeC-------------CCcEEEE
Q 004207          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW---ITDVRFSPSLSRLATSSA-------------DRTVRVW  624 (768)
Q Consensus       561 l~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~---V~sl~fspdg~~LaTgs~-------------DgtIrVW  624 (768)
                      +.+-++|.+++..+  ..++.+|+. |+.+..+......   =.++.+.|+|++|+.+..             ...|..+
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev  229 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV  229 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred             eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence            55667888776655  678888875 5665554322211   235667888988887771             1123333


Q ss_pred             ECCCCCeeEEEee--cC-------------------------CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE
Q 004207          625 DTENPDYSLRTFT--GH-------------------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG  677 (768)
Q Consensus       625 Dl~t~~~~~~~~~--~h-------------------------~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~  677 (768)
                      | .+++. +..+.  .|                         =..+.++.+.+..+.+++++..-..|...|.+++++..
T Consensus       230 d-~tG~v-v~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~W  307 (477)
T PF05935_consen  230 D-PTGEV-VWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKW  307 (477)
T ss_dssp             --TTS-E-EEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEE
T ss_pred             C-CCCCE-EEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEE
Confidence            4 33332 11110  00                         02478999999777888888777789999988888887


Q ss_pred             EEecCCCee----EEEEec------------------CCCEEEEEEcCC---eEEEEECCCceEeee---------ccee
Q 004207          678 VFKCQSGAT----QMRFQP------------------RLGRILAAAIEN---YISILDVETQVCRLK---------LQTL  723 (768)
Q Consensus       678 ~~~~~~~i~----sl~fsp------------------~~~~llags~Dg---~I~IwD~~t~~~~~~---------~~~I  723 (768)
                      .+..+....    ...+.|                  -+.+-+.-..++   .|.+||-........         ...+
T Consensus       308 ilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~~~~l~vFDNg~~r~~~~~~~~~~~~~~Sr~  387 (477)
T PF05935_consen  308 ILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGPQGNLLVFDNGNGRGYGQPAYVSPKDNYSRA  387 (477)
T ss_dssp             EES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS---SEEEEE--TTGGGS--SSCCG-----EE
T ss_pred             EeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceEEcCCCCeEEEEEEECCCCCCCCCccccccccccceE
Confidence            776432211    011111                  123344444566   888888755432211         1123


Q ss_pred             EEeecCC--CceE---Eecc------CCCCeeEEEEeCC-CCEEEEEECCC
Q 004207          724 ELWNMTE--NKTL---TLSA------HDKLVSSLAASTV-NGMVASASHDK  762 (768)
Q Consensus       724 ~iwd~~~--~~~~---~l~~------H~~~I~sla~spd-g~~LaSgs~DG  762 (768)
                      ..|.+..  ....   .+..      .+..|.++.+-++ |++|++.+..|
T Consensus       388 v~Y~Ide~~~T~~~vw~y~~~~g~~~yS~~~s~aq~l~n~gn~li~~g~~~  438 (477)
T PF05935_consen  388 VEYRIDENKMTVEQVWEYGKPRGNEFYSPIVSSAQYLPNKGNTLITSGMAG  438 (477)
T ss_dssp             EEEEEETTTTEEEEEEEESGGGGGGG--SS--EEEEETTTTEEEEEEEEET
T ss_pred             EEEEecCCCceEEEEEEeCCCCCCCccCCcceeeEEecCCCCEEEEeCccc
Confidence            3333222  2221   1111      3456777888898 88888877554

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.01  E-value=6.1  Score=49.62  Aligned_cols=139  Identities=13%  Similarity=0.236  Sum_probs=84.4

Q ss_pred             eCCCcEEEEECCCCeEEEEeccCCCCEEEEEE--------cCCCCEEEEEeCCCcEEEEECCCCCe--eEE------Eee
Q 004207          574 GHDKKAVLWCTESFTVKSTLEEHTQWITDVRF--------SPSLSRLATSSADRTVRVWDTENPDY--SLR------TFT  637 (768)
Q Consensus       574 s~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~f--------spdg~~LaTgs~DgtIrVWDl~t~~~--~~~------~~~  637 (768)
                      +-|..+.+|+.+++.....+.+-...|..|..        -|.=++++..+.--.|.|+-+.-.+.  ...      .+.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            35789999999997777777766666766654        22334555555555566665432111  011      112


Q ss_pred             cCCCCeEEEEEeCCCCeEEEEEeCCCcEEE--EECCCC---e-e-----------------EEEE-ecCCCeeEEEEecC
Q 004207          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRY--WSINNG---S-C-----------------AGVF-KCQSGATQMRFQPR  693 (768)
Q Consensus       638 ~h~~~V~slafsp~g~~lLaSgs~Dg~I~i--WDl~sg---~-~-----------------i~~~-~~~~~i~sl~fsp~  693 (768)
                      .....|.|+....+|+ +|++|. ||.|+-  |...++   + |                 .... ....+|..+.+...
T Consensus       176 ~dg~~V~~I~~t~nGR-IF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S  253 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGR-IFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS  253 (1311)
T ss_pred             cCCceEEEEEeccCCc-EEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence            2345788888666655 665555 554432  222211   1 1                 0111 12457888999888


Q ss_pred             CCEEEEEEcCCeEEEEECCCc
Q 004207          694 LGRILAAAIENYISILDVETQ  714 (768)
Q Consensus       694 ~~~llags~Dg~I~IwD~~t~  714 (768)
                      .+.+++-+..++|.+||+...
T Consensus       254 R~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  254 RNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             cceeeeeccCceEEEEEccCC
Confidence            888999999999999999873

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=86.33  E-value=58  Score=41.40  Aligned_cols=16  Identities=19%  Similarity=0.310  Sum_probs=10.8

Q ss_pred             EEEEEcCCCCEEEEEe
Q 004207          559 ESCHFSPDGKLLATGG  574 (768)
Q Consensus       559 ~sl~fSpdg~~LaSgs  574 (768)
                      .+|+++++|.+.++-+
T Consensus       596 r~Iavg~~G~lyvaEs  611 (1899)
T KOG4659|consen  596 RDIAVGTDGALYVAES  611 (1899)
T ss_pred             hceeecCCceEEEEec
Confidence            5678888887655543

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=86.25  E-value=36  Score=36.94  Aligned_cols=66  Identities=9%  Similarity=0.049  Sum_probs=32.7

Q ss_pred             CCCEEEEEeCCC-----cEEEEECCCCCee--EEEeecCCCCe--EEEEEeCCCCeEEEEEeC-----CCcEEEEECCCC
Q 004207          608 SLSRLATSSADR-----TVRVWDTENPDYS--LRTFTGHSTTV--MSLDFHPSKEDLLCSCDN-----NSEIRYWSINNG  673 (768)
Q Consensus       608 dg~~LaTgs~Dg-----tIrVWDl~t~~~~--~~~~~~h~~~V--~slafsp~g~~lLaSgs~-----Dg~I~iWDl~sg  673 (768)
                      ++.+++.|+.++     .+..||+.+....  ...+..-..+.  .+++..  +..+++.|+.     ...+..||+.+.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence            455667776543     5677777665431  11111111111  122222  2456666664     235788888765


Q ss_pred             ee
Q 004207          674 SC  675 (768)
Q Consensus       674 ~~  675 (768)
                      +-
T Consensus       150 ~W  151 (323)
T TIGR03548       150 EW  151 (323)
T ss_pred             Ce
Confidence            43

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02153 epithiospecifier protein

Probab=86.19  E-value=43  Score=36.70  Aligned_cols=66  Identities=17%  Similarity=0.162  Sum_probs=33.8

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEE--EEecc---CCCCEEEEEEcCCCCEEEEEeCC-----------CcEEEE
Q 004207          566 DGKLLATGGHD-----KKAVLWCTESFTVK--STLEE---HTQWITDVRFSPSLSRLATSSAD-----------RTVRVW  624 (768)
Q Consensus       566 dg~~LaSgs~D-----g~I~VWdl~t~~~~--~tl~~---h~~~V~sl~fspdg~~LaTgs~D-----------gtIrVW  624 (768)
                      ++++++.|+.+     ..|.+||..+.+-.  ..+..   ........+..-++++++.|+.+           ..|.+|
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence            56667777653     25778888764322  11110   11111111122345666776654           247788


Q ss_pred             ECCCCCe
Q 004207          625 DTENPDY  631 (768)
Q Consensus       625 Dl~t~~~  631 (768)
                      |+++...
T Consensus       165 d~~~~~W  171 (341)
T PLN02153        165 NIADGKW  171 (341)
T ss_pred             ECCCCeE
Confidence            9886543

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=85.83  E-value=50  Score=38.32  Aligned_cols=143  Identities=13%  Similarity=0.048  Sum_probs=73.1

Q ss_pred             CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCC-CCeEEEEEeCCCC
Q 004207          575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKE  653 (768)
Q Consensus       575 ~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~-~~V~slafsp~g~  653 (768)
                      ....+.++|.+ |.+...+.........+.+.++|.+++...  ..++.+|+.........+.... ..=..+.+.|+|+
T Consensus       126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn  202 (477)
T PF05935_consen  126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGN  202 (477)
T ss_dssp             BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred             CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCcccccccccEECCCCC
Confidence            45567777754 566655543222221266778888777655  7788888864221122222210 1124566778887


Q ss_pred             eEEEEEe-------C-----CCcEEEEECCCCeeEEEEec--------C--------------------CCeeEEEEecC
Q 004207          654 DLLCSCD-------N-----NSEIRYWSINNGSCAGVFKC--------Q--------------------SGATQMRFQPR  693 (768)
Q Consensus       654 ~lLaSgs-------~-----Dg~I~iWDl~sg~~i~~~~~--------~--------------------~~i~sl~fsp~  693 (768)
                      .++++..       .     +-.|..+| .+|+.+..+..        .                    -.+.++.+.+.
T Consensus       203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~  281 (477)
T PF05935_consen  203 LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS  281 (477)
T ss_dssp             EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred             EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence            6665541       0     12366667 77777776653        0                    12678999996


Q ss_pred             CCEEEEEEcC-CeEEEEECCCceEeeecc
Q 004207          694 LGRILAAAIE-NYISILDVETQVCRLKLQ  721 (768)
Q Consensus       694 ~~~llags~D-g~I~IwD~~t~~~~~~~~  721 (768)
                      ...|++.+.. ..|..+|.++++....+.
T Consensus       282 dd~iivSsR~~s~V~~Id~~t~~i~Wilg  310 (477)
T PF05935_consen  282 DDSIIVSSRHQSAVIKIDYRTGKIKWILG  310 (477)
T ss_dssp             TTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred             CCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence            6777777765 489999988877665554

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PRK10115 protease 2; Provisional

Probab=85.45  E-value=97  Score=37.73  Aligned_cols=150  Identities=11%  Similarity=0.027  Sum_probs=72.5

Q ss_pred             EEEEEcCCCCEEEEEeCC------CcEEEEECCCC--eEEEEeccCCCCEE-EEEEcCCCCEEEEEeC---CCcEEEEEC
Q 004207          559 ESCHFSPDGKLLATGGHD------KKAVLWCTESF--TVKSTLEEHTQWIT-DVRFSPSLSRLATSSA---DRTVRVWDT  626 (768)
Q Consensus       559 ~sl~fSpdg~~LaSgs~D------g~I~VWdl~t~--~~~~tl~~h~~~V~-sl~fspdg~~LaTgs~---DgtIrVWDl  626 (768)
                      ..++|++|++.|+.+..+      ..|+++++.++  +....+........ .+..+.++++++..+.   ++.+.+|+.
T Consensus       175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            458999999866655432      35778888877  33334443333333 3333447777665544   357899985


Q ss_pred             CCCCeeEEEeecCC-CCeEEEEEeCCCCeEEEEEeC---CCcEEEEECCC-CeeEEEEec--CCCeeEEEEecCCCEEEE
Q 004207          627 ENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDN---NSEIRYWSINN-GSCAGVFKC--QSGATQMRFQPRLGRILA  699 (768)
Q Consensus       627 ~t~~~~~~~~~~h~-~~V~slafsp~g~~lLaSgs~---Dg~I~iWDl~s-g~~i~~~~~--~~~i~sl~fsp~~~~lla  699 (768)
                      +........+..+. .....+. +.. ..+++....   ...|...++.. ++....+..  ...+..+.+..  ++|+.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~--~~l~~  330 (686)
T PRK10115        255 ELADAEPFVFLPRRKDHEYSLD-HYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT--DWLVV  330 (686)
T ss_pred             cCCCCCceEEEECCCCCEEEEE-eCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC--CEEEE
Confidence            43211112222222 2222222 333 334433332   22344445542 222233333  22466677763  35444


Q ss_pred             -EEcCCe--EEEEECC
Q 004207          700 -AAIENY--ISILDVE  712 (768)
Q Consensus       700 -gs~Dg~--I~IwD~~  712 (768)
                       ...++.  |.++|..
T Consensus       331 ~~~~~g~~~l~~~~~~  346 (686)
T PRK10115        331 EERQRGLTSLRQINRK  346 (686)
T ss_pred             EEEeCCEEEEEEEcCC
Confidence             444555  3444543

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=85.44  E-value=41  Score=42.35  Aligned_cols=196  Identities=16%  Similarity=0.101  Sum_probs=0.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCc------------------EEEEECCCCeEEEEe----ccCCCCEEEEEEcCCCC--
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKK------------------AVLWCTESFTVKSTL----EEHTQWITDVRFSPSLS--  610 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~------------------I~VWdl~t~~~~~tl----~~h~~~V~sl~fspdg~--  610 (768)
                      ...|+++..+..-.+..++..+..                  |.+..-++++.+-.+    ..|.-.+..+...-.+.  
T Consensus       964 e~~vy~v~t~~~~~~~~~~~d~~e~~~~~de~~~~p~~~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~ 1043 (1366)
T KOG1896|consen  964 EKKVYAVITSTPVPYERLGEDGEEEVISRDENVIHPEGEQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTK 1043 (1366)
T ss_pred             cceEEEEEEeccceeeecccccccccccccccccccccccceeEEecCCccccccccccCccceeeEEEEEEEEeccccc


Q ss_pred             ----EEEEEeC---------CCcEEEEECC-----------CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 004207          611 ----RLATSSA---------DRTVRVWDTE-----------NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (768)
Q Consensus       611 ----~LaTgs~---------DgtIrVWDl~-----------t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~  666 (768)
                          +|++|..         -|.++|||+-           ..+.........+++|..++=-   ...|++|. .-.|.
T Consensus      1044 ~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV---~G~l~~~~-GqKI~ 1119 (1366)
T KOG1896|consen 1044 GKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV---RGHLLSSQ-GQKII 1119 (1366)
T ss_pred             CCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe---ccEEEEcc-CcEEE


Q ss_pred             EEEC-CCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeE
Q 004207          667 YWSI-NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSS  745 (768)
Q Consensus       667 iWDl-~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~s  745 (768)
                      +|++ +....+..--..-++......--.++|++|.--..|.++-+..             ....-..+.-....-.+.+
T Consensus      1120 v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqe-------------ep~rlsL~srd~~~l~v~s 1186 (1366)
T KOG1896|consen 1120 VRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQE-------------EPYRLSLLSRDFEPLNVYS 1186 (1366)
T ss_pred             EEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEcc-------------CceEEEEeecCCchhhcee


Q ss_pred             EEEeCCCC--EEEEEECCCcEEEe
Q 004207          746 LAASTVNG--MVASASHDKCVKIW  767 (768)
Q Consensus       746 la~spdg~--~LaSgs~DG~V~IW  767 (768)
                      +.|--+|.  +|+++..|+.|++|
T Consensus      1187 ~EFLVdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1187 TEFLVDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred             eeeEEcCCeeEEEEEcCCCcEEEE

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=85.40  E-value=62  Score=35.43  Aligned_cols=53  Identities=13%  Similarity=0.021  Sum_probs=25.8

Q ss_pred             CCCEEEEEeCC-----------CcEEEEECCCCeEEEEeccCCCCEEE--EEEcCCCCEEEEEeCC
Q 004207          566 DGKLLATGGHD-----------KKAVLWCTESFTVKSTLEEHTQWITD--VRFSPSLSRLATSSAD  618 (768)
Q Consensus       566 dg~~LaSgs~D-----------g~I~VWdl~t~~~~~tl~~h~~~V~s--l~fspdg~~LaTgs~D  618 (768)
                      ++++.+.|+.+           ..+..||..+.+=...-........+  .+..-++++.+.|+.+
T Consensus        63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            67777777753           24677887664322111011111111  1112356777777764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=85.32  E-value=20  Score=40.96  Aligned_cols=143  Identities=16%  Similarity=0.174  Sum_probs=87.2

Q ss_pred             CCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC-------EEEEEeCCCcEEEEECCCCCeeEEE-
Q 004207          565 PDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-------RLATSSADRTVRVWDTENPDYSLRT-  635 (768)
Q Consensus       565 pdg~~La-Sgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~-------~LaTgs~DgtIrVWDl~t~~~~~~~-  635 (768)
                      .|..+|+ .|+....++-.|++.|+++..+..|...  -|.|.|+.+       .-++|-.+..|.-.|.+-....+.. 
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence            3555544 5566667888899999999999888764  577877532       2344555666666676543322222 


Q ss_pred             -eec--CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 004207          636 -FTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDV  711 (768)
Q Consensus       636 -~~~--h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~  711 (768)
                       .+.  ......|..-...  ..+++++..|.|++||--.-.....+. .+..|..+..+.+|.++++.|. .+|.+.|+
T Consensus       555 esKdY~tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~  631 (776)
T COG5167         555 ESKDYKTKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV  631 (776)
T ss_pred             eehhccccccccccccccC--ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence             111  1122333333333  367789999999999953222222222 2466888889999888877765 56777776


Q ss_pred             C
Q 004207          712 E  712 (768)
Q Consensus       712 ~  712 (768)
                      .
T Consensus       632 ~  632 (776)
T COG5167         632 P  632 (776)
T ss_pred             c
Confidence            4

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=84.95  E-value=60  Score=34.92  Aligned_cols=150  Identities=9%  Similarity=0.068  Sum_probs=92.3

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc-CC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE-
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-  633 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~-h~-~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~-  633 (768)
                      -+..+.++  +++...+..+.-++|.|+.+......+.. .. +--.++..  .|++..++..|.-+.+.|+.++..+. 
T Consensus        88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~l  163 (370)
T COG5276          88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQL  163 (370)
T ss_pred             hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCcee
Confidence            35566664  56777777888899999987543322211 11 33344444  48899888877778899998766433 


Q ss_pred             -EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe---eEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 004207          634 -RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL  709 (768)
Q Consensus       634 -~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~---~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~Iw  709 (768)
                       ..+.........++.+  |++-+ .+..|+-+.+.|+.+..   .+........+.++..+++  +.+..-.+..+.+.
T Consensus       164 agrya~~~~d~~~v~IS--Gn~AY-vA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vvy~egvliv  238 (370)
T COG5276         164 AGRYALPGGDTHDVAIS--GNYAY-VAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVVYDEGVLIV  238 (370)
T ss_pred             eeeeccCCCCceeEEEe--cCeEE-EEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEEcccceEEE
Confidence             2222233334566666  34334 45568889999997643   3444444557888877776  44444445556677


Q ss_pred             ECCCce
Q 004207          710 DVETQV  715 (768)
Q Consensus       710 D~~t~~  715 (768)
                      |..+..
T Consensus       239 d~s~~s  244 (370)
T COG5276         239 DVSGPS  244 (370)
T ss_pred             ecCCCC
Confidence            766654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=84.87  E-value=3.3  Score=31.17  Aligned_cols=31  Identities=39%  Similarity=0.623  Sum_probs=26.3

Q ss_pred             CCeEEEEEcCC-C--CEEEEEeCCCcEEEEECCC
Q 004207          556 SKVESCHFSPD-G--KLLATGGHDKKAVLWCTES  586 (768)
Q Consensus       556 ~~I~sl~fSpd-g--~~LaSgs~Dg~I~VWdl~t  586 (768)
                      +.|.+|.|||+ +  .+|+.+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            46899999984 4  5899988889999999984

It contains a characteristic DLL sequence motif.

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=83.73  E-value=1.2  Score=54.60  Aligned_cols=6  Identities=33%  Similarity=0.296  Sum_probs=3.3

Q ss_pred             cccccc
Q 004207          280 QQQKSL  285 (768)
Q Consensus       280 ~~~~~~  285 (768)
                      +|.+||
T Consensus      2018 ~q~~~~ 2023 (2131)
T KOG4369|consen 2018 AQQSFM 2023 (2131)
T ss_pred             cCCCCC
Confidence            345666

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=83.51  E-value=60  Score=40.42  Aligned_cols=124  Identities=14%  Similarity=0.110  Sum_probs=66.2

Q ss_pred             EEEEECCCCeEEEEeccC----CCCEEEEEEcCCCC--EEEEEeC-----------CCcEEEEECCCCCeeEEEeec--C
Q 004207          579 AVLWCTESFTVKSTLEEH----TQWITDVRFSPSLS--RLATSSA-----------DRTVRVWDTENPDYSLRTFTG--H  639 (768)
Q Consensus       579 I~VWdl~t~~~~~tl~~h----~~~V~sl~fspdg~--~LaTgs~-----------DgtIrVWDl~t~~~~~~~~~~--h  639 (768)
                      |+++|..+++.+..+...    ...|.++.|+....  ++++|+.           +|.++.|++-.....+..+..  -
T Consensus       855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~  934 (1205)
T KOG1898|consen  855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI  934 (1205)
T ss_pred             EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence            677777776666554321    22466666765332  3344332           455777776433332333321  1


Q ss_pred             CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207          640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISI  708 (768)
Q Consensus       640 ~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~llags~Dg~I~I  708 (768)
                      .+.|  .+.+|..+.+++..  ...+++||+...+..+....   ...|+.+.+.-  .++++|.....|.+
T Consensus       935 ~~~v--~Ai~~f~~~~Lagv--G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~--~RI~VgD~qeSV~~ 1000 (1205)
T KOG1898|consen  935 PGPV--GAICPFQGRVLAGV--GRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYG--ARIVVGDIQESVHF 1000 (1205)
T ss_pred             Cccc--eEEeccCCEEEEec--ccEEEEeeCChHHHHhhhhhccCceEEEEEeecc--eEEEEeeccceEEE
Confidence            2333  34567666666433  56899999987665544332   33455555543  46777765554443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.48  E-value=5.7  Score=39.31  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=26.7

Q ss_pred             CCeEEEEEeCC-----CCeEEEEEeCCCcEEEEECCC
Q 004207          641 TTVMSLDFHPS-----KEDLLCSCDNNSEIRYWSINN  672 (768)
Q Consensus       641 ~~V~slafsp~-----g~~lLaSgs~Dg~I~iWDl~s  672 (768)
                      ..|.+++|+|.     ++.+|++...++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            47999999994     467899999999999998663

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=83.30  E-value=4  Score=30.77  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=26.7

Q ss_pred             CCeEEEEEeCCCC--eEEEEEeCCCcEEEEECCC
Q 004207          641 TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINN  672 (768)
Q Consensus       641 ~~V~slafsp~g~--~lLaSgs~Dg~I~iWDl~s  672 (768)
                      +.|.++.|+|...  .+|+....-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998655  6888888889999999995

It contains a characteristic DLL sequence motif.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.26  E-value=12  Score=42.09  Aligned_cols=104  Identities=13%  Similarity=0.195  Sum_probs=63.2

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe---eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC
Q 004207          595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (768)
Q Consensus       595 ~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~---~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~  671 (768)
                      ...++|.+|.|++|.+.||+--.|++|.+++.-....   ...........|...+|....+ +.+..  +..+-+|-+.
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e-~A~i~--~~G~e~y~v~  140 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE-IAFIT--DQGIEFYQVL  140 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee-EEEEe--cCCeEEEEEc
Confidence            3567999999999999999999999999999843221   1122233345588889987643 33222  2345566543


Q ss_pred             CC-eeEEEEe-cCCCeeEEEEecCCCEEEEEE
Q 004207          672 NG-SCAGVFK-CQSGATQMRFQPRLGRILAAA  701 (768)
Q Consensus       672 sg-~~i~~~~-~~~~i~sl~fsp~~~~llags  701 (768)
                      .. ..++..+ ....|.-..|.++...++.++
T Consensus       141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             hhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            21 1122222 235667777777766644443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.16  E-value=41  Score=40.35  Aligned_cols=155  Identities=13%  Similarity=0.099  Sum_probs=75.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE-e--ccCCCCEEEEEEcCCCCEEEEEeCCCcEEE-EECCCCCe
Q 004207          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-L--EEHTQWITDVRFSPSLSRLATSSADRTVRV-WDTENPDY  631 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~t-l--~~h~~~V~sl~fspdg~~LaTgs~DgtIrV-WDl~t~~~  631 (768)
                      +.+..+.|+.+.. |++...||+|+||++-....... .  ......|..+.|..+|-.+++  .+|.|.+ -+.+... 
T Consensus        84 ~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~-  159 (829)
T KOG2280|consen   84 GELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPK-  159 (829)
T ss_pred             CCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcch-
Confidence            3788999996554 55667899999999864322221 1  222233555555555544444  3444433 3333211 


Q ss_pred             eEEEeec---CCCCeEEEEEeCCCC--e-EEEEEeCCCcEEEEECC--CCeeEEEEecCCCeeEEEEecCCCEEEEEEcC
Q 004207          632 SLRTFTG---HSTTVMSLDFHPSKE--D-LLCSCDNNSEIRYWSIN--NGSCAGVFKCQSGATQMRFQPRLGRILAAAIE  703 (768)
Q Consensus       632 ~~~~~~~---h~~~V~slafsp~g~--~-lLaSgs~Dg~I~iWDl~--sg~~i~~~~~~~~i~sl~fsp~~~~llags~D  703 (768)
                       +.....   ...+-.|-...+.+.  . ++...-..+ ..++-+.  +............+..+.++|+.++|+--...
T Consensus       160 -~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~  237 (829)
T KOG2280|consen  160 -LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTET  237 (829)
T ss_pred             -hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecC
Confidence             111111   111112222222211  1 111110000 0111111  11111111224678889999999998888889


Q ss_pred             CeEEEEECCCceE
Q 004207          704 NYISILDVETQVC  716 (768)
Q Consensus       704 g~I~IwD~~t~~~  716 (768)
                      |.|.+.+.+...+
T Consensus       238 G~i~~vs~D~~~~  250 (829)
T KOG2280|consen  238 GKIWVVSIDLSQI  250 (829)
T ss_pred             CcEEEEecchhhh
Confidence            9988877765543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=83.13  E-value=8.6  Score=43.77  Aligned_cols=61  Identities=13%  Similarity=0.306  Sum_probs=48.4

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC
Q 004207          608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (768)
Q Consensus       608 dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~  671 (768)
                      ...++|.+|..|-||+||--. ......+.+....|..|....+|+++||||-  ..|.+-|++
T Consensus       572 esGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~  632 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVP  632 (776)
T ss_pred             cCceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEecc
Confidence            346999999999999999643 2224556667788999999999999999984  578888875

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.91  E-value=13  Score=42.63  Aligned_cols=84  Identities=10%  Similarity=0.076  Sum_probs=47.4

Q ss_pred             eeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc----eeEEeecCCCceEEeccCCCCeeEEEEeCCC---CEEEE
Q 004207          685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ----TLELWNMTENKTLTLSAHDKLVSSLAASTVN---GMVAS  757 (768)
Q Consensus       685 i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~----~I~iwd~~~~~~~~l~~H~~~I~sla~spdg---~~LaS  757 (768)
                      |..+..++.|..++.++.+|.+.++=.+.......+.    .|.+--..-+..+......-.+..++|+|+.   ..|..
T Consensus       106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i  185 (741)
T KOG4460|consen  106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL  185 (741)
T ss_pred             EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence            5667888998888888888866554321111000000    1111111111111122223346778999986   57888


Q ss_pred             EECCCcEEEeC
Q 004207          758 ASHDKCVKIWK  768 (768)
Q Consensus       758 gs~DG~V~IWD  768 (768)
                      -+.|.+|+|||
T Consensus       186 L~sdnviRiy~  196 (741)
T KOG4460|consen  186 LTSDNVIRIYS  196 (741)
T ss_pred             EecCcEEEEEe
Confidence            88999999996

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=82.78  E-value=0.18  Score=56.53  Aligned_cols=144  Identities=13%  Similarity=0.156  Sum_probs=96.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE-E
Q 004207          600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-V  678 (768)
Q Consensus       600 V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~-~  678 (768)
                      .....|-+.+.-++.++.+..|..||-.....  . -....+....++|+-+++.+++.+...+.+.+||+.+...-. .
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~--l-e~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE  113 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVI--L-ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE  113 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhccee--c-ccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence            34566888777788999999999999654221  1 112345667789998888888888889999999997532211 1


Q ss_pred             EecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEE
Q 004207          679 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA  758 (768)
Q Consensus       679 ~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSg  758 (768)
                      +.....-.-+.|++....++.+...+.+.||+..+.+...                ....|...+++++|.+++ +++.+
T Consensus       114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii----------------v~Gkh~RRgtq~av~lEd-~vil~  176 (615)
T KOG2247|consen  114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII----------------VMGKHQRRGTQIAVTLED-YVILC  176 (615)
T ss_pred             ccCcchHHHHhhccCCccccccccccceEEEeccchhhhh----------------hhcccccceeEEEecccc-eeeec
Confidence            1111112226788888888888888888888876644322                222477888999998865 44555


Q ss_pred             ECCCc
Q 004207          759 SHDKC  763 (768)
Q Consensus       759 s~DG~  763 (768)
                      +.|..
T Consensus       177 dcd~~  181 (615)
T KOG2247|consen  177 DCDNT  181 (615)
T ss_pred             CcHHH
Confidence            55543

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=82.71  E-value=36  Score=40.81  Aligned_cols=60  Identities=18%  Similarity=0.217  Sum_probs=39.0

Q ss_pred             ccCCCCEEEEEEcCCCCEEEEEeCCCc--EEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEE
Q 004207          594 EEHTQWITDVRFSPSLSRLATSSADRT--VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC  657 (768)
Q Consensus       594 ~~h~~~V~sl~fspdg~~LaTgs~Dgt--IrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLa  657 (768)
                      ..+...+..+.|+|++..++..+.++.  ..+|-+....    ....+...|....|++.+..+++
T Consensus        56 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~  117 (620)
T COG1506          56 LTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAF  117 (620)
T ss_pred             cccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEE
Confidence            345677889999999999988874432  3444433221    23334456778888888876664

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=82.68  E-value=34  Score=36.38  Aligned_cols=101  Identities=10%  Similarity=0.031  Sum_probs=69.7

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE
Q 004207          598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG  677 (768)
Q Consensus       598 ~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~  677 (768)
                      ..-..|+-.|||..-+++...+.|--.|..+++. ...-.+.......|..-|++...|+-.+  ..|.-+|-++.+..+
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev-~~ypLg~Ga~Phgiv~gpdg~~Witd~~--~aI~R~dpkt~evt~  138 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV-ETYPLGSGASPHGIVVGPDGSAWITDTG--LAIGRLDPKTLEVTR  138 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCCCce-EEEecCCCCCCceEEECCCCCeeEecCc--ceeEEecCcccceEE
Confidence            3456788899999999999999998899998886 3444445566778888999886663222  256656665544322


Q ss_pred             -EEe---cCCCeeEEEEecCCCEEEEEE
Q 004207          678 -VFK---CQSGATQMRFQPRLGRILAAA  701 (768)
Q Consensus       678 -~~~---~~~~i~sl~fsp~~~~llags  701 (768)
                       .+.   .........|.+.|...+++.
T Consensus       139 f~lp~~~a~~nlet~vfD~~G~lWFt~q  166 (353)
T COG4257         139 FPLPLEHADANLETAVFDPWGNLWFTGQ  166 (353)
T ss_pred             eecccccCCCcccceeeCCCccEEEeec
Confidence             111   145577889999988777765

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.59  E-value=7.4  Score=48.93  Aligned_cols=161  Identities=16%  Similarity=0.239  Sum_probs=87.9

Q ss_pred             EEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEE--------eCCCCeEEEEEeCCCcEEEEEC
Q 004207          600 ITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF--------HPSKEDLLCSCDNNSEIRYWSI  670 (768)
Q Consensus       600 V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slaf--------sp~g~~lLaSgs~Dg~I~iWDl  670 (768)
                      -+.+-+.|. ++.-+|  -|+.+.+|+.+++.. ...+.+-...|..|..        -|.=.++|+.+. --.|.++-+
T Consensus        81 ~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e-~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV  156 (1311)
T KOG1900|consen   81 KTDMGIFPEIGRAWIT--IDNNLFLWNYESDNE-LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGV  156 (1311)
T ss_pred             eeeeccchhhcceEEE--eCCeEEEEEcCCCCc-cccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEE
Confidence            344445554 443444  578899999998543 5556555556666553        223344555444 345666544


Q ss_pred             CC----Cee---E--EEEec-CCCeeEEEEecCCCEEEEEEcCCeEEE--EECCCceEeeecceeEEeecCCC-------
Q 004207          671 NN----GSC---A--GVFKC-QSGATQMRFQPRLGRILAAAIENYISI--LDVETQVCRLKLQTLELWNMTEN-------  731 (768)
Q Consensus       671 ~s----g~~---i--~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~I--wD~~t~~~~~~~~~I~iwd~~~~-------  731 (768)
                      .-    +..   .  ..+.. +..|.++....+ +.++.++.||.|+-  |....+=...+   .+..++..+       
T Consensus       157 ~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~n-GRIF~~G~dg~lyEl~Yq~~~gWf~~r---c~Kiclt~s~ls~lvP  232 (1311)
T KOG1900|consen  157 SFDEFTGELSIFNTSFKISVDGVSVNCITYTEN-GRIFFAGRDGNLYELVYQAEDGWFGSR---CRKICLTKSVLSSLVP  232 (1311)
T ss_pred             EeccccCcccccccceeeecCCceEEEEEeccC-CcEEEeecCCCEEEEEEeccCchhhcc---cccccCchhHHHHhhh
Confidence            21    111   0  11222 345777775555 45666666664432  22222100000   111111111       


Q ss_pred             ceEEec-cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          732 KTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       732 ~~~~l~-~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .+..+. .+.++|..+++...-..+.+-+..|+|.+||
T Consensus       233 s~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~  270 (1311)
T KOG1900|consen  233 SLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYD  270 (1311)
T ss_pred             hhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEE
Confidence            122333 6778999999998888999999999999996

>TIGR01063 gyrA DNA gyrase, A subunit

Probab=82.30  E-value=1.4e+02  Score=37.10  Aligned_cols=154  Identities=8%  Similarity=0.007  Sum_probs=78.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECC---C------CeEE---EEeccCCCCEEEEEEc--CCCCEEEEEeCCCcEEE
Q 004207          558 VESCHFSPDGKLLATGGHDKKAVLWCTE---S------FTVK---STLEEHTQWITDVRFS--PSLSRLATSSADRTVRV  623 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~---t------~~~~---~tl~~h~~~V~sl~fs--pdg~~LaTgs~DgtIrV  623 (768)
                      +..+..+.....|+..+.+|.+...+..   .      |..+   ..+.....-|.++...  .+..+++..+.+|.|+-
T Consensus       537 l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKR  616 (800)
T TIGR01063       537 IEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKK  616 (800)
T ss_pred             eEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEE
Confidence            4444444455666666677877665432   2      1222   1222223334555543  24568899999999998


Q ss_pred             EECCCCCe------eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-------CeeEE--EEecCCCeeEE
Q 004207          624 WDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAG--VFKCQSGATQM  688 (768)
Q Consensus       624 WDl~t~~~------~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-------g~~i~--~~~~~~~i~sl  688 (768)
                      .++..-..      ....+.. ...+..+........+++ .+..|.+..+.+..       ..-+.  .+.....|.++
T Consensus       617 i~l~~~~~~~r~G~~aiklke-~D~lv~v~~~~~~d~lll-~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~  694 (800)
T TIGR01063       617 TSLTEFSNIRSNGIIAIKLDD-GDELISVRLTSGDDEVML-GSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSL  694 (800)
T ss_pred             EEhHHhhhhccCCcccccCCC-CCEEEEEEEeCCCCEEEE-EECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEE
Confidence            87753211      0111222 234444443334344443 44466665554421       11112  22223345555


Q ss_pred             EEecCCCEEEEEEcCCeEEEEECCC
Q 004207          689 RFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       689 ~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                      ....+...++..+..|.++...+..
T Consensus       695 ~~v~~~~~ll~vT~~G~~Kr~~l~e  719 (800)
T TIGR01063       695 LVVSEESYLLIVTENGYGKRTSIEE  719 (800)
T ss_pred             EEeccccEEEEEecCCcEEEEEHHH
Confidence            4444455688888888887776554

This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.

>PRK10350 hypothetical protein; Provisional

Probab=82.14  E-value=8.5  Score=35.57  Aligned_cols=11  Identities=9%  Similarity=-0.164  Sum_probs=4.7

Q ss_pred             HHHHHHhhhhc
Q 004207           57 SVFWDIFIART   67 (768)
Q Consensus        57 ~~FWdlf~A~~   67 (768)
                      +.|-..++.-.
T Consensus        14 ~~~AqplN~~N   24 (145)
T PRK10350         14 VGFAQPINTLN   24 (145)
T ss_pred             HHHHhhhhccC
Confidence            34444444433

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=81.97  E-value=74  Score=33.69  Aligned_cols=70  Identities=13%  Similarity=0.037  Sum_probs=49.4

Q ss_pred             CCCeEEEEEe------CCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEE----EecCCCEEEEEEcCCeEEEE
Q 004207          640 STTVMSLDFH------PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR----FQPRLGRILAAAIENYISIL  709 (768)
Q Consensus       640 ~~~V~slafs------p~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~----fsp~~~~llags~Dg~I~Iw  709 (768)
                      ...|+|++--      ++.-..++.|.++|.|.|.|-........+...+....++    |..-+.+|++++.||.|++.
T Consensus       176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i  255 (257)
T PF14779_consen  176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI  255 (257)
T ss_pred             CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence            4568888753      2345678899999999999999888888877655433333    32123468889999988764

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=81.73  E-value=93  Score=34.68  Aligned_cols=12  Identities=17%  Similarity=0.385  Sum_probs=8.9

Q ss_pred             cEEEEECCCCCe
Q 004207          620 TVRVWDTENPDY  631 (768)
Q Consensus       620 tIrVWDl~t~~~  631 (768)
                      .|.+||..+...
T Consensus       190 ~v~~YD~~t~~W  201 (376)
T PRK14131        190 EVLSYDPSTNQW  201 (376)
T ss_pred             eEEEEECCCCee
Confidence            588899877654

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=81.58  E-value=0.33  Score=54.42  Aligned_cols=140  Identities=16%  Similarity=0.175  Sum_probs=89.3

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCeeEEEee
Q 004207          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFT  637 (768)
Q Consensus       559 ~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~L-aTgs~DgtIrVWDl~t~~~~~~~~~  637 (768)
                      ....|-+.+.-++.++.+..|..||-. +.....+. .++...+++|..++..+ +.+-..+.+.+||+.+.......+.
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g  115 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG  115 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence            345677777668888888889999854 34443332 34556788888877654 4455678999999986432111111


Q ss_pred             c-CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcCC
Q 004207          638 G-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIEN  704 (768)
Q Consensus       638 ~-h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg  704 (768)
                      + |....  +.|++.... ++.+...|.+.|++..+.+.+-... +...++++++.+.+ +.+.++.|.
T Consensus       116 g~~s~sl--l~wsKg~~e-l~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~  180 (615)
T KOG2247|consen  116 GTSSKSL--LAWSKGTPE-LVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDN  180 (615)
T ss_pred             CcchHHH--HhhccCCcc-ccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHH
Confidence            1 22222  678776654 4467788999999988765554443 55678899999874 444444443

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=81.18  E-value=60  Score=36.12  Aligned_cols=83  Identities=16%  Similarity=0.181  Sum_probs=46.2

Q ss_pred             CCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcE-EEEECCCCee--EEEE-e-cCCCeeEEEEe
Q 004207          617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI-RYWSINNGSC--AGVF-K-CQSGATQMRFQ  691 (768)
Q Consensus       617 ~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I-~iWDl~sg~~--i~~~-~-~~~~i~sl~fs  691 (768)
                      .+|.+.-||..+..  .+.+...-.....|+.+|++..++++=..-..| ++| +...+.  ...| . ..+..-.+..+
T Consensus       197 ~~GRl~~YD~~tK~--~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw-i~g~k~gt~EvFa~~LPG~PDNIR~~  273 (376)
T KOG1520|consen  197 PTGRLFRYDPSTKV--TKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW-IKGPKAGTSEVFAEGLPGYPDNIRRD  273 (376)
T ss_pred             CccceEEecCcccc--hhhhhhcccccccccCCCCCCEEEEEeeccceeeeeE-ecCCccCchhhHhhcCCCCCcceeEC
Confidence            45677777766533  334443445567899999998777554444333 445 332111  0111 1 24555567778


Q ss_pred             cCCCEEEEEEc
Q 004207          692 PRLGRILAAAI  702 (768)
Q Consensus       692 p~~~~llags~  702 (768)
                      ++|.+.++-..
T Consensus       274 ~~G~fWVal~~  284 (376)
T KOG1520|consen  274 STGHFWVALHS  284 (376)
T ss_pred             CCCCEEEEEec
Confidence            88877665543

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.94  E-value=21  Score=45.14  Aligned_cols=35  Identities=20%  Similarity=0.265  Sum_probs=28.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 004207          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK  590 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~  590 (768)
                      .....++|+|.-.++|.+..+|.|++|-...-+..
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~   70 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFV   70 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccceEEE
Confidence            34567899999999999999999999976544433

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=80.31  E-value=1.1e+02  Score=34.64  Aligned_cols=148  Identities=11%  Similarity=0.080  Sum_probs=77.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee----
Q 004207          600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----  675 (768)
Q Consensus       600 V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~----  675 (768)
                      ...+..++++.+++.+.....++-||--.... ...-......++++.|.+++..++ ++ .+|.|. |....+..    
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W-~~~~~~~~~~l~~v~~~~dg~l~l-~g-~~G~l~-~S~d~G~~~~~~  316 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYW-QPHNRASARRIQNMGWRADGGLWL-LT-RGGGLY-VSKGTGLTEEDF  316 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcce-EEecCCCccceeeeeEcCCCCEEE-Ee-CCceEE-EecCCCCccccc
Confidence            44456677777776665443333444322111 111222345689999998877444 44 456543 44444431    


Q ss_pred             -EEEEec---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC
Q 004207          676 -AGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV  751 (768)
Q Consensus       676 -i~~~~~---~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd  751 (768)
                       ......   ...+..+.|.+++ .+++++..|.|....- .++.         |....    ....-....+.+.|.++
T Consensus       317 ~f~~~~~~~~~~~l~~v~~~~d~-~~~a~G~~G~v~~s~D-~G~t---------W~~~~----~~~~~~~~ly~v~f~~~  381 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGYRSKK-EAWAAGGSGILLRSTD-GGKS---------WKRDK----GADNIAANLYSVKFFDD  381 (398)
T ss_pred             ceeecccCCCCcceEEEEEcCCC-cEEEEECCCcEEEeCC-CCcc---------eeEcc----ccCCCCcceeEEEEcCC
Confidence             222221   2347888888774 4667777776655432 2111         11100    00122345778888776


Q ss_pred             CCEEEEEECCCcEEEe
Q 004207          752 NGMVASASHDKCVKIW  767 (768)
Q Consensus       752 g~~LaSgs~DG~V~IW  767 (768)
                      ++.+ ..+.+|.|.-|
T Consensus       382 ~~g~-~~G~~G~il~~  396 (398)
T PLN00033        382 KKGF-VLGNDGVLLRY  396 (398)
T ss_pred             CceE-EEeCCcEEEEe
Confidence            5544 45677887665

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=80.19  E-value=1.2e+02  Score=34.97  Aligned_cols=108  Identities=15%  Similarity=0.134  Sum_probs=60.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEec-----cCCCCEEEEEEcCCC------CEEEEEe----
Q 004207          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE-----EHTQWITDVRFSPSL------SRLATSS----  616 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~--~~tl~-----~h~~~V~sl~fspdg------~~LaTgs----  616 (768)
                      .-..-+.|+|.|||++|++--..|.|++++..++..  +..+.     ........|+|+|+-      .+|+..-    
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~  107 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN  107 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence            344578899999998877765569999998655432  21111     124568999999873      2344432    


Q ss_pred             ------CCCcEEEEECCCCC----eeEEEeecC----CCCeEEEEEeCCCCeEEEEEeC
Q 004207          617 ------ADRTVRVWDTENPD----YSLRTFTGH----STTVMSLDFHPSKEDLLCSCDN  661 (768)
Q Consensus       617 ------~DgtIrVWDl~t~~----~~~~~~~~h----~~~V~slafsp~g~~lLaSgs~  661 (768)
                            ....|.-|.+....    .....+...    ...-..|.|.|+|..+|.+|+.
T Consensus       108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                  12345445543211    011122110    1224568899998755555543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.11  E-value=65  Score=38.72  Aligned_cols=50  Identities=12%  Similarity=0.041  Sum_probs=36.2

Q ss_pred             CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (768)
Q Consensus       577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t  628 (768)
                      -.|+||++. |..+..+.-....+..+.|+.+. .|++...||+++||++-.
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG  113 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence            458888874 55555543334478899999875 566678999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	768
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-17
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		8e-15
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-14
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-14
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-14
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-13
2h9l_A	329	Wdr5delta23 Length = 329		2e-13
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-13
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-13
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-13
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-13
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-13
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-13
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-13
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-13
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-13
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-13
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-13
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-12
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-12
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-12
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-11
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-09
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-09
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		8e-09
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-08
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-05
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-08
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-08
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-08
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-06
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-08
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-08
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		4e-08
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		4e-08
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		5e-08
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		5e-08
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		5e-08
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		5e-08
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-07
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		8e-07
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-06
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-06
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-06
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		4e-06
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-06
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		4e-06
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-06
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		5e-06
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-06
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-06
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		3e-06
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		3e-06
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-06
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		3e-06
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-06
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		3e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		4e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		4e-06
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		7e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		7e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-05
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		4e-05
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		4e-05
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		5e-05
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		5e-05
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		6e-05
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		8e-05
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		9e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		3e-04
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		4e-04
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		5e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-04
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		7e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 105/221 (47%), Gaps = 21/221 (9%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
             Q +   +S V    FSPDG+ +A+   DK   LW      ++ TL  H+  +  V FS
Sbjct: 336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFS 394
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
           P    +A++S D+TV++W+       L+T TGHS++V  + F P  + +  + D+ + ++
Sbjct: 395 PDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT-VK 451
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
            W+ N      +    S    + F P  G+ +A+A ++                +T++LW
Sbjct: 452 LWNRNGQLLQTLTGHSSSVRGVAFSPD-GQTIASASDD----------------KTVKLW 494
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
           N       TL+ H   V  +A S     +ASAS DK VK+W
Sbjct: 495 NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 79.3 bits (194), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 51/266 (19%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
           +   T  V+   F   GKLLA+   D    LW  + F    T+  H   ++ V   P+  
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWS 669
            + ++S D+T+++W+ +   Y ++TFTGH   V  +   P+++  L+ SC N+  +R W 
Sbjct: 206 HIVSASRDKTIKMWEVQT-GYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWV 262
Query: 670 INNGSCAG-------VFKCQSGATQMRFQ----------PRLGR----ILAAAIENYISI 708
           +    C         V +C S A +  +            + G+    +L+ + +  I +
Sbjct: 263 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322
Query: 709 LDVETQVCRLKL-------------------------QTLELWNMTENKTL-TLSAHDKL 742
            DV T +C + L                         +TL +W+    + + TL+AH+  
Sbjct: 323 WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF 382
Query: 743 VSSLAASTVNGMVASASHDKCVKIWK 768
           V+SL        V + S D+ VK+W+
Sbjct: 383 VTSLDFHKTAPYVVTGSVDQTVKVWE 408

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 114/267 (42%), Gaps = 34/267 (12%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
           ++GR +E  K     +F L    T  V S  FSP+G+ LA+   DK   +W       + 
Sbjct: 4   QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
           T+  H   I+DV +S   + L ++S D+T+++WD  +    L+T  GHS  V   +F+P 
Sbjct: 63  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILD 710
           + +L+ S   +  +R W +  G C       S   + + F      I++++ +    I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 711 VETQVCRLKL--------------------------QTLELWNMTENKTL-TLSAH-DKL 742
             +  C   L                           TL+LW+ ++ K L T + H ++ 
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 240
Query: 743 VSSLAASTVNG--MVASASHDKCVKIW 767
               A  +V G   + S S D  V IW
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIW 267

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 114/267 (42%), Gaps = 34/267 (12%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
           ++GR +E  K     +F L    T  V S  FSP+G+ LA+   DK   +W       + 
Sbjct: 4   QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
           T+  H   I+DV +S   + L ++S D+T+++WD  +    L+T  GHS  V   +F+P 
Sbjct: 63  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILD 710
           + +L+ S   +  +R W +  G C       S   + + F      I++++ +    I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 711 VETQVCRLKL--------------------------QTLELWNMTENKTL-TLSAH-DKL 742
             +  C   L                           TL+LW+ ++ K L T + H ++ 
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 240
Query: 743 VSSLAASTVNG--MVASASHDKCVKIW 767
               A  +V G   + S S D  V IW
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIW 267

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 113/267 (42%), Gaps = 34/267 (12%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
           ++GR +E  K     +F L    T  V S  FSP+G+ LA    DK   +W       + 
Sbjct: 4   QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
           T+  H   I+DV +S   + L ++S D+T+++WD  +    L+T  GHS  V   +F+P 
Sbjct: 63  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILD 710
           + +L+ S   +  +R W +  G C       S   + + F      I++++ +    I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 711 VETQVCRLKL--------------------------QTLELWNMTENKTL-TLSAH-DKL 742
             +  C   L                           TL+LW+ ++ K L T + H ++ 
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 240
Query: 743 VSSLAASTVNG--MVASASHDKCVKIW 767
               A  +V G   + S S D  V IW
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIW 267

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
            + +PA +  V + HF+ DG L+ +  +D    +W T S   +K+ +++    ++ V+FS
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
           P+   +  ++ D T+++WD       L+T+TGH            K +  C   N     
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 249
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
            +S+  G                       I++ + +N + I +++T+    KLQ     
Sbjct: 250 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 282
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
                       H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 283 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 315

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 33/248 (13%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
           +   T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   +
Sbjct: 36  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
            L ++S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +
Sbjct: 96  LLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV 153
Query: 671 NNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL--------- 720
             G C       S   + + F      I++++ +    I D  +  C   L         
Sbjct: 154 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 213
Query: 721 -----------------QTLELWNMTENKTL-TLSAH-DKLVSSLAASTVNG--MVASAS 759
                             TL+LW+ ++ K L T + H ++     A  +V G   + S S
Sbjct: 214 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 273
Query: 760 HDKCVKIW 767
            D  V IW
Sbjct: 274 EDNLVYIW 281

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
            + +PA +  V + HF+ DG L+ +  +D    +W T S   +K+ +++    ++ V+FS
Sbjct: 147 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 206
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
           P+   +  ++ D T+++WD       L+T+TGH            K +  C   N     
Sbjct: 207 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 248
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
            +S+  G                       I++ + +N + I +++T+    KLQ     
Sbjct: 249 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 281
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
                       H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 282 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 314

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
            + +PA +  V + HF+ DG L+ +  +D    +W T S   +K+ +++    ++ V+FS
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
           P+   +  ++ D T+++WD       L+T+TGH            K +  C   N     
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 249
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
            +S+  G                       I++ + +N + I +++T+    KLQ     
Sbjct: 250 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 282
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
                       H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 283 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 315

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
            + +PA +  V + HF+ DG L+ +  +D    +W T S   +K+ +++    ++ V+FS
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
           P+   +  ++ D T+++WD       L+T+TGH            K +  C   N     
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 243
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
            +S+  G                       I++ + +N + I +++T+    KLQ     
Sbjct: 244 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 276
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
                       H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 277 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 309

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
            + +PA +  V + HF+ DG L+ +  +D    +W T S   +K+ +++    ++ V+FS
Sbjct: 141 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 200
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
           P+   +  ++ D T+++WD       L+T+TGH            K +  C   N     
Sbjct: 201 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 242
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
            +S+  G                       I++ + +N + I +++T+    KLQ     
Sbjct: 243 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 275
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
                       H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 276 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 308

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
            + +PA +  V + HF+ DG L+ +  +D    +W T S   +K+ +++    ++ V+FS
Sbjct: 143 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 202
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
           P+   +  ++ D T+++WD       L+T+TGH            K +  C   N     
Sbjct: 203 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 244
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
            +S+  G                       I++ + +N + I +++T+    KLQ     
Sbjct: 245 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 277
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
                       H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 278 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 310

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
            + +PA +  V + HF+ DG L+ +  +D    +W T S   +K+ +++    ++ V+FS
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
           P+   +  ++ D T+++WD       L+T+TGH            K +  C   N     
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 249
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
            +S+  G                       I++ + +N + I +++T+    KLQ     
Sbjct: 250 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 282
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
                       H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 283 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 315

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
            + +PA +  V + HF+ DG L+ +  +D    +W T S   +K+ +++    ++ V+FS
Sbjct: 166 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 225
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
           P+   +  ++ D T+++WD       L+T+TGH            K +  C   N     
Sbjct: 226 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 267
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
            +S+  G                       I++ + +N + I +++T+    KLQ     
Sbjct: 268 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 300
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
                       H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 301 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 333

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
            + +PA +  V + HF+ DG L+ +  +D    +W T S   +K+ +++    ++ V+FS
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
           P+   +  ++ D T+++WD       L+T+TGH            K +  C   N     
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 265
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
            +S+  G                       I++ + +N + I +++T+    KLQ     
Sbjct: 266 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 298
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
                       H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 299 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 331

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
            + +PA +  V + HF+ DG L+ +  +D    +W T S   +K+ +++    ++ V+FS
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
           P+   +  ++ D T+++WD       L+T+TGH            K +  C   N     
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 243
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
            +S+  G                       I++ + +N + I +++T+    KLQ     
Sbjct: 244 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 276
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
                       H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 277 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 309

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
            + +PA +  V + HF+ DG L+ +  +D    +W T S   +K+ +++    ++ V+FS
Sbjct: 138 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 197
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
           P+   +  ++ D T+++WD       L+T+TGH            K +  C   N     
Sbjct: 198 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 239
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
            +S+  G                       I++ + +N + I +++T+    KLQ     
Sbjct: 240 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 272
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
                       H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 273 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 305

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
            + +PA +  V + HF+ DG L+ +  +D    +W T S   +K+ +++    ++ V+FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
           P+   +  ++ D T+++WD       L+T+TGH            K +  C   N     
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 246
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
            +S+  G                       I++ + +N + I +++T+    KLQ     
Sbjct: 247 -FSVTGGK---------------------WIVSGSEDNMVYIWNLQTKEIVQKLQ----- 279
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
                       H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 280 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 312

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
            + +PA +  V + HF+ DG L+ +  +D    +W T S   +K+ +++    ++ V+FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
           P+   +  ++ D  +++WD       L+T+TGH            K +  C   N     
Sbjct: 205 PNGKYILAATLDNDLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 246
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
            +S+  G                       I++ + +N + I +++T+    KLQ     
Sbjct: 247 -FSVTGGK---------------------WIVSGSEDNMVYIWNLQTKEIVQKLQ----- 279
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
                       H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 280 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 312

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 89/217 (41%), Gaps = 54/217 (24%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
           P+S   + S  FSPDGK LATG  D+   +W  E+  +   L+ H Q I  + + PS  +
Sbjct: 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 179
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
           L + S DRTVR+WD       LRT                                    
Sbjct: 180 LVSGSGDRTVRIWD-------LRT------------------------------------ 196
Query: 672 NGSCAGVFKCQSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQTLELWNMTE 730
            G C+     + G T +   P  G+ +AA +++  + + D ET     +L        +E
Sbjct: 197 -GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD-------SE 248
Query: 731 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
           N++ T   H   V S+  +     V S S D+ VK+W
Sbjct: 249 NESGT--GHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 512 GSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA 571
           GS D  V  +   + AD            + F      +I    ++V+   +S DG  LA
Sbjct: 76  GSFDSTVSIWAKEESAD------------RTFEMDLLAIIEGHENEVKGVAWSNDGYYLA 123
Query: 572 TGGHDKKAVLWCT----ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627
           T   DK   +W T    E +   S L+EH+Q +  V + PS + LA+SS D TVR+W   
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY 183
Query: 628 NPDYS-LRTFTGHSTTVMSLDFHPSKEDL-LCSCDNNSEIRYW 668
           + D+  +    GH  TV S DF  ++    LCS  ++S +R W
Sbjct: 184 DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 27/216 (12%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADR 619
           ++P G LLA+ G D++  +W TE  S+  KS L E H + +  V +SP  + LA++S D 
Sbjct: 24  WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83
Query: 620 TVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SC 675
           T  +W     D+  + T  GH   V S+ + PS  +LL +C  +  +  W ++      C
Sbjct: 84  TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYEC 142
Query: 676 AGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQTLELWNMTENK 732
             V    +     + + P    + +A+ ++ + +   E    VC                
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVC---------------- 186
Query: 733 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768
             TL  H+  V SLA       +AS S D+ V+IW+
Sbjct: 187 CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR 222

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 124/289 (42%), Gaps = 46/289 (15%)
Query: 522 LSPDDADPRDRVGRSAEVGK-----GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576
           L  D    + R+  S++ GK      FT  +   +    + V +C ++P G  +A GG D
Sbjct: 68  LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLD 127
Query: 577 KKAVLW-----CTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
            K  ++       E+   K  ++  HT +++   F+ S  ++ T+S D T  +WD E+  
Sbjct: 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 187
Query: 631 YSLRTFTGHSTTVMSLDFHPSKED---LLCSCDNNSEIRYWSINNGSCAGVFKC-QSGAT 686
             L++F GH   V+ LD  PS+     +   CD  + +  W + +G C   F+  +S   
Sbjct: 188 L-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV--WDMRSGQCVQAFETHESDVN 244
Query: 687 QMRFQP--------------RLGRILA---AAIENYISILDVETQV-----CRLKL---- 720
            +R+ P              RL  + A    AI +  SI+   + V      RL      
Sbjct: 245 SVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN 304
Query: 721 -QTLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
             T+ +W++ +   ++ L  H+  VS+L  S       S S D  +++W
Sbjct: 305 DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 32/207 (15%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
           D +++ TG  D    +W   +  + +TL  H + +  +RF+  +  + T S DR++ VWD
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIAVWD 239
Query: 626 TENP-DYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-- 681
             +P D +L R   GH   V  +DF    +  + S   +  I+ W  N  +C  V     
Sbjct: 240 MASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVW--NTSTCEFVRTLNG 294
Query: 682 -QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD 740
            + G   ++++ RL  +++ + +N I + D+E   C   L+ LE              H+
Sbjct: 295 HKRGIACLQYRDRL--VVSGSSDNTIRLWDIECGAC---LRVLE-------------GHE 336
Query: 741 KLVSSLAASTVNGMVASASHDKCVKIW 767
           +LV  +     N  + S ++D  +K+W
Sbjct: 337 ELVRCIRFD--NKRIVSGAYDGKIKVW 361

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 12/163 (7%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
           DG+ + +G +D    +W  E+ T   TL+ HT  +  ++F      + + S D ++RVWD
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG--IHVVSGSLDTSIRVWD 305
Query: 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKC 681
            E  +  + T TGH +    ++    K+++L S + +S ++ W I  G C     G  K 
Sbjct: 306 VETGN-CIHTLTGHQSLTSGMEL---KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH 361
Query: 682 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLE 724
           QS  T ++F      ++ ++ +  + + D++T      L TLE
Sbjct: 362 QSAVTCLQFNKNF--VITSSDDGTVKLWDLKTGEFIRNLVTLE 402

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
           ++ +V K  T  +   I A   +V  C FS D   +AT   DKK  +W + +  +  T +
Sbjct: 637 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 696
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
           EH++ +    F+   +   LAT S D  +++WD  N      T  GH+ +V    F P  
Sbjct: 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 755
Query: 653 EDLLCSCDNNSEIRYWSINNGS 674
           E LL SC  +  +R W + + +
Sbjct: 756 E-LLASCSADGTLRLWDVRSAN 776

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 93/235 (39%), Gaps = 28/235 (11%)
Query: 556  SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
            S ++ C FSP   L           LW  +S    +    H  W+  V FSP  S   T+
Sbjct: 841  STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 900
Query: 616  SADRTVRVWDT----ENPDYSLR-----TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
            S D+T+RVW+T    +N    L+      F  + T V+++D   +   L        +I 
Sbjct: 901  SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVD---NIRGLQLIAGKTGQID 957
Query: 667  YWSINNGSCAGV--------FKCQSGATQMRFQPRLGRILAAAIENYISILDVE------ 712
            Y      SC  +        F  + GA ++   P   R+ ++ + +  ++  ++      
Sbjct: 958  YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGVGHKKAVRHIQFTADGK 1016
Query: 713  TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
            T +   +   +++WN      + L AH + V        +  + S S D  VK+W
Sbjct: 1017 TLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQ-DSRLLSWSFDGTVKVW 1070

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
           ++ +V K  T  +   I A   +V  C FS D   +AT   DKK  +W + +  +  T +
Sbjct: 644 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 703
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
           EH++ +    F+   +   LAT S D  +++WD  N      T  GH+ +V    F P  
Sbjct: 704 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 762
Query: 653 EDLLCSCDNNSEIRYWSINNGS 674
           E LL SC  +  +R W + + +
Sbjct: 763 E-LLASCSADGTLRLWDVRSAN 783

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 93/235 (39%), Gaps = 28/235 (11%)
Query: 556  SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
            S ++ C FSP   L           LW  +S    +    H  W+  V FSP  S   T+
Sbjct: 848  STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 907
Query: 616  SADRTVRVWDT----ENPDYSLR-----TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
            S D+T+RVW+T    +N    L+      F  + T V+++D   +   L        +I 
Sbjct: 908  SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVD---NIRGLQLIAGKTGQID 964
Query: 667  YWSINNGSCAGV--------FKCQSGATQMRFQPRLGRILAAAIENYISILDVE------ 712
            Y      SC  +        F  + GA ++   P   R+ ++ + +  ++  ++      
Sbjct: 965  YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGVGHKKAVRHIQFTADGK 1023
Query: 713  TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
            T +   +   +++WN      + L AH + V        +  + S S D  VK+W
Sbjct: 1024 TLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQ-DSRLLSWSFDGTVKVW 1077

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 23/185 (12%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
           +TL  H+Q +  +R++P    LA+   D  V VW +   E     L+TFT H   V ++ 
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IE 703
           + P + ++L +    S+  IR W++ +G+C       S    + + P    +++     +
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 354
Query: 704 NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 763
           N + I    T                  K   L  H   V SL  S     VASA+ D+ 
Sbjct: 355 NQLVIWKYPTMA----------------KVAELKGHTSRVLSLTMSPDGATVASAAADET 398
Query: 764 VKIWK 768
           +++W+
Sbjct: 399 LRLWR 403

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 23/185 (12%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
           +TL  H+Q +  +R++P    LA+   D  V VW +   E     L+TFT H   V ++ 
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IE 703
           + P + ++L +    S+  IR W++ +G+C       S    + + P    +++     +
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 343
Query: 704 NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 763
           N + I    T                  K   L  H   V SL  S     VASA+ D+ 
Sbjct: 344 NQLVIWKYPTMA----------------KVAELKGHTSRVLSLTMSPDGATVASAAADET 387
Query: 764 VKIWK 768
           +++W+
Sbjct: 388 LRLWR 392

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 19/183 (10%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
           +TL  H+Q +  +R++P    LA+   D  V VW +   E     L+TFT H   V ++ 
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 705
           + P + ++L +    S+  IR W++ +G+C       S    + + P    +++     +
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG--HGF 261
Query: 706 ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVK 765
                 + Q+   K  T+        K   L  H   V SL  S     VASA+ D+ ++
Sbjct: 262 -----AQNQLVIWKYPTMA-------KVAELKGHTSRVLSLTMSPDGATVASAAADETLR 309
Query: 766 IWK 768
           +W+
Sbjct: 310 LWR 312

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 3/155 (1%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
           FSPD + LATG H  K  ++  ES   + +L+   ++I  + +SP    LA+ + D  + 
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 682
           ++D       L T  GH+  + SL F P  + LL +  ++  I+ + + + + AG     
Sbjct: 190 IFDIATGKL-LHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHANLAGTLSGH 247
Query: 683 -SGATQMRFQPRLGRILAAAIENYISILDVETQVC 716
            S    + F P     ++++ +  + + DV T+ C
Sbjct: 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC 282

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 103/258 (39%), Gaps = 36/258 (13%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 96  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 155
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P    L  S
Sbjct: 156 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 212
Query: 659 CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ--- 714
              ++  + W +  G C   F   +S    + F P        + +    + D+      
Sbjct: 213 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 272
Query: 715 --------VC-----------RLKLQTLELWN------MTENKTLTLSAHDKLVSSLAAS 749
                   +C           RL L   + +N      +  ++   L+ HD  VS L  +
Sbjct: 273 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 332
Query: 750 TVNGMVASASHDKCVKIW 767
                VA+ S D  +KIW
Sbjct: 333 DDGMAVATGSWDSFLKIW 350

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 103/258 (39%), Gaps = 36/258 (13%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 85  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P    L  S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ--- 714
              ++  + W +  G C   F   +S    + F P        + +    + D+      
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
Query: 715 --------VC-----------RLKLQTLELWN------MTENKTLTLSAHDKLVSSLAAS 749
                   +C           RL L   + +N      +  ++   L+ HD  VS L  +
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 750 TVNGMVASASHDKCVKIW 767
                VA+ S D  +KIW
Sbjct: 322 DDGMAVATGSWDSFLKIW 339

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 103/258 (39%), Gaps = 36/258 (13%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 85  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P    L  S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ--- 714
              ++  + W +  G C   F   +S    + F P        + +    + D+      
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
Query: 715 --------VC-----------RLKLQTLELWN------MTENKTLTLSAHDKLVSSLAAS 749
                   +C           RL L   + +N      +  ++   L+ HD  VS L  +
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 750 TVNGMVASASHDKCVKIW 767
                VA+ S D  +KIW
Sbjct: 322 DDGMAVATGSWDSFLKIW 339

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 103/258 (39%), Gaps = 36/258 (13%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 85  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P    L  S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ--- 714
              ++  + W +  G C   F   +S    + F P        + +    + D+      
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
Query: 715 --------VC-----------RLKLQTLELWN------MTENKTLTLSAHDKLVSSLAAS 749
                   +C           RL L   + +N      +  ++   L+ HD  VS L  +
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 750 TVNGMVASASHDKCVKIW 767
                VA+ S D  +KIW
Sbjct: 322 DDGMAVATGSWDSFLKIW 339

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 103/258 (39%), Gaps = 36/258 (13%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 85  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P    L  S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ--- 714
              ++  + W +  G C   F   +S    + F P        + +    + D+      
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
Query: 715 --------VC-----------RLKLQTLELWN------MTENKTLTLSAHDKLVSSLAAS 749
                   +C           RL L   + +N      +  ++   L+ HD  VS L  +
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 750 TVNGMVASASHDKCVKIW 767
                VA+ S D  +KIW
Sbjct: 322 DDGMAVATGSWDSFLKIW 339

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 108/244 (44%), Gaps = 38/244 (15%)
Query: 502 LTDMDRFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560
           LT  + FV D +L  +N  +  S       D+  R  ++  G T+  F       S+V S
Sbjct: 72  LTGHNHFVSDLALSQENCFAISSS-----WDKTLRLWDLRTGTTYKRF---VGHQSEVYS 123
Query: 561 CHFSPDGKLLATGGHDKKAVLW-----CTESFTVKSTLEEHTQWITDVRFSPSLS----- 610
             FSPD + + + G +++  LW     C  S   K   E H+ W++ VR+SP +      
Sbjct: 124 VAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK---ENHSDWVSCVRYSPIMKSANKV 180
Query: 611 -----RLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
                  A+   D  ++VW+T   ++ +R TF  H + V  L   P+ +  + +   + +
Sbjct: 181 QPFAPYFASVGWDGRLKVWNT---NFQIRYTFKAHESNVNHLSISPNGK-YIATGGKDKK 236
Query: 665 IRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ----VCRLK 719
           +  W I N +     F   S   Q+ F P+L + +A   +  + I ++ TQ    VC ++
Sbjct: 237 LLIWDILNLTYPQREFDAGSTINQIAFNPKL-QWVAVGTDQGVKIFNLMTQSKAPVCTIE 295
Query: 720 LQTL 723
            + +
Sbjct: 296 AEPI 299

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 21/213 (9%)
Query: 566 DGKLLATGGHDKKAVLWCTES------FTV-KSTLEEHTQWITDVRFSPSLSRLATSSAD 618
           D  +L +G  DK  ++W          F +    L  H  +++D+  S       +SS D
Sbjct: 38  DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--- 675
           +T+R+WD      + + F GH + V S+ F P    +L S     EI+ W+I  G C   
Sbjct: 98  KTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNI-LGECKFS 154
Query: 676 -AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTL 734
            A         + +R+ P +    A  ++ +           RLK     +WN       
Sbjct: 155 SAEKENHSDWVSCVRYSPIMKS--ANKVQPFAPYFASVGWDGRLK-----VWNTNFQIRY 207
Query: 735 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
           T  AH+  V+ L+ S     +A+   DK + IW
Sbjct: 208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 606
            L+ A T++V    F+P  + +LATG  DK   LW   +  +K  T E H   I  V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 607 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
           P + + LA+S  DR + VWD              + P   L    GH+  +    ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 653 EDLLCSCDNNSEIRYWSI 670
             ++CS   ++ ++ W +
Sbjct: 389 PWVICSVSEDNIMQIWQM 406

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 9/169 (5%)
Query: 569 LLATGGHDKKAVLWCTESFTVKST---LEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
           L  +   D+K ++W T S T       ++ HT  +  + F+P S   LAT SAD+TV +W
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQS 683
           D  N    L TF  H   +  + + P  E +L S   +  +  W ++  G        + 
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 363
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRL-KLQTLELWNMTEN 731
           G  ++ F   +     A I ++    +    +C + +   +++W M EN
Sbjct: 364 GPPELLF---IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAEN 409

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 94/220 (42%), Gaps = 19/220 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSR 611
           T  V S  FS D + + +G  DK   LW T     +TV+   E H++W++ VRFSP+ S 
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 185
Query: 612 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
             + +   D+ V+VW+  N    L+T   GH+  + ++   P    L  S   + +   W
Sbjct: 186 PIIVSCGWDKLVKVWNLANC--KLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 242
Query: 669 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNM 728
            +N G              + F P     L AA    I I D+E ++   +L+       
Sbjct: 243 DLNEGKHLYTLDGGDIINALCFSPNR-YWLCAATGPSIKIWDLEGKIIVDELK------- 294
Query: 729 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768
            E  + +  A     +SLA S     + +   D  V++W+
Sbjct: 295 QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 94/220 (42%), Gaps = 19/220 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSR 611
           T  V S  FS D + + +G  DK   LW T     +TV+   E H++W++ VRFSP+ S 
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 162
Query: 612 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
             + +   D+ V+VW+  N    L+T   GH+  + ++   P    L  S   + +   W
Sbjct: 163 PIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 219
Query: 669 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNM 728
            +N G              + F P     L AA    I I D+E ++   +L+       
Sbjct: 220 DLNEGKHLYTLDGGDIINALCFSPNR-YWLCAATGPSIKIWDLEGKIIVDELK------- 271
Query: 729 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768
            E  + +  A     +SLA S     + +   D  V++W+
Sbjct: 272 QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 311

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 16/136 (11%)
Query: 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 606
            L+ A T++V    F+P  + +LATG  DK   LW   +  +K  T E H   I  V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 607 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
           P + + LA+S  DR + VWD              + P   L    GH+  +    ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 653 EDLLCSCDNNSEIRYW 668
             ++CS   ++  + W
Sbjct: 389 PWVICSVSEDNIXQIW 404

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 277 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 336
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
           + + LA+S  DR + VWD         TE+    P   L    GH+  +    ++P++  
Sbjct: 337 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 396
Query: 655 LLCSCDNNSEIRYWSI 670
           ++CS   ++ ++ W +
Sbjct: 397 IICSVSEDNIMQVWQM 412

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 9/169 (5%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
           L  +   D+K ++W T +        T++ HT  +  + F+P S   LAT SAD+TV +W
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQS 683
           D  N    L +F  H   +  + + P  E +L S   +  +  W ++  G        + 
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 369
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRL-KLQTLELWNMTEN 731
           G  ++ F   +     A I ++    +    +C + +   +++W M EN
Sbjct: 370 GPPELLF---IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 415

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 275 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 334
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
           + + LA+S  DR + VWD         TE+    P   L    GH+  +    ++P++  
Sbjct: 335 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 394
Query: 655 LLCSCDNNSEIRYWSI 670
           ++CS   ++ ++ W +
Sbjct: 395 IICSVSEDNIMQVWQM 410

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 9/169 (5%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
           L  +   D+K ++W T +        T++ HT  +  + F+P S   LAT SAD+TV +W
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQS 683
           D  N    L +F  H   +  + + P  E +L S   +  +  W ++  G        + 
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 367
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRL-KLQTLELWNMTEN 731
           G  ++ F   +     A I ++    +    +C + +   +++W M EN
Sbjct: 368 GPPELLF---IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 413

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
           + + LA+S  DR + VWD         TE+    P   L    GH+  +    ++P++  
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 392
Query: 655 LLCSCDNNSEIRYWSI 670
           ++CS   ++ ++ W +
Sbjct: 393 IICSVSEDNIMQVWQM 408

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 9/169 (5%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
           L  +   D+K ++W T +        T++ HT  +  + F+P S   LAT SAD+TV +W
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQS 683
           D  N    L +F  H   +  + + P  E +L S   +  +  W ++  G        + 
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 365
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRL-KLQTLELWNMTEN 731
           G  ++ F   +     A I ++    +    +C + +   +++W M EN
Sbjct: 366 GPPELLF---IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 608 SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSKED 654
           + + LA+S  DR + VWD              + P   L    GH+  +    ++P++  
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 388
Query: 655 LLCSCDNNSEIRYWSI 670
           ++CS   ++ ++ W +
Sbjct: 389 VICSVSEDNIMQVWQM 404

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 9/169 (5%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
           L  +   D+K ++W T S        +++ HT  +  + F+P S   LAT SAD+TV +W
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQS 683
           D  N    L +F  H   +  + + P  E +L S   +  +  W ++  G        + 
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAED 361
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRL-KLQTLELWNMTEN 731
           G  ++ F   +     A I ++    +    +C + +   +++W M EN
Sbjct: 362 GPPELLF---IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAEN 407

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 19/205 (9%)
Query: 569 LLATGGHDKKAVLWCT----ESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
           LL +   DK  + W      + F V   + + H+  + D   +   +   ++S D+T+R+
Sbjct: 32  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683
           WD    +   R F GH + VMS+D    K  ++ S   +  I+ W+I     A +     
Sbjct: 92  WDVATGETYQR-FVGHKSDVMSVDI-DKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKT-LTLSAHDKL 742
             +Q+R  P        A ++ ++I+           + ++ WN+ + +       H+  
Sbjct: 150 WVSQVRVVPN-----EKADDDSVTIISAGND------KMVKAWNLNQFQIEADFIGHNSN 198
Query: 743 VSSLAASTVNGMVASASHDKCVKIW 767
           +++L AS    ++ASA  D  + +W
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLW 223

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 84/183 (45%), Gaps = 30/183 (16%)
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
           LE H+ +++DV  S + +   ++S D ++R+W+ +N     + F GH+  V+S+ F P  
Sbjct: 63  LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYK-FLGHTKDVLSVAFSPDN 121
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-----TQMRFQPRLGR--ILAAAIENY 705
             ++    +N+ +R W++  G C  +     GA     + +RF P L    I++   +N 
Sbjct: 122 RQIVSGGRDNA-LRVWNV-KGEC--MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 706 ISILDVETQVCRLKLQTLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCV 764
           + +                 W++   + +T L  H   V+S+  S    + AS+  D   
Sbjct: 178 VKV-----------------WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVA 220
Query: 765 KIW 767
           ++W
Sbjct: 221 RLW 223

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 19/205 (9%)
Query: 569 LLATGGHDKKAVLWCT----ESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
           LL +   DK  + W      + F V   + + H+  + D   +   +   ++S D+T+R+
Sbjct: 32  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683
           WD    +   R F GH + VMS+D    K  ++ S   +  I+ W+I     A +     
Sbjct: 92  WDVATGETYQR-FVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKT-LTLSAHDKL 742
             +Q+R  P        A ++ ++I+           + ++ WN+ + +       H+  
Sbjct: 150 WVSQVRVVPN-----EKADDDSVTIISAGND------KMVKAWNLNQFQIEADFIGHNSN 198
Query: 743 VSSLAASTVNGMVASASHDKCVKIW 767
           +++L AS    ++ASA  D  + +W
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLW 223

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 19/205 (9%)
Query: 569 LLATGGHDKKAVLWCT----ESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
           LL +   DK  + W      + F V   + + H+  + D   +   +   ++S D+T+R+
Sbjct: 26  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 85
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683
           WD    +   R F GH + VMS+D    K  ++ S   +  I+ W+I     A +     
Sbjct: 86  WDVATGETYQR-FVGHKSDVMSVDI-DKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 143
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKT-LTLSAHDKL 742
             +Q+R  P        A ++ ++I+           + ++ WN+ + +       H+  
Sbjct: 144 WVSQVRVVPN-----EKADDDSVTIISAGND------KMVKAWNLNQFQIEADFIGHNSN 192
Query: 743 VSSLAASTVNGMVASASHDKCVKIW 767
           +++L AS    ++ASA  D  + +W
Sbjct: 193 INTLTASPDGTLIASAGKDGEIMLW 217

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 19/205 (9%)
Query: 569 LLATGGHDKKAVLWCT----ESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
           LL +   DK  + W      + F V   + + H+  + D   +   +   ++S D+T+R+
Sbjct: 32  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683
           WD    +   R F GH + VMS+D    K  ++ S   +  I+ W+I     A +     
Sbjct: 92  WDVATGETYQR-FVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKT-LTLSAHDKL 742
             +Q+R  P        A ++ ++I+           + ++ WN+ + +       H+  
Sbjct: 150 WVSQVRVVPN-----EKADDDSVTIISAGND------KMVKAWNLNQFQIEADFIGHNSN 198
Query: 743 VSSLAASTVNGMVASASHDKCVKIW 767
           +++L AS    ++ASA  D  + +W
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLW 223

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 19/205 (9%)
Query: 569 LLATGGHDKKAVLWCT----ESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
           LL +   DK  + W      + F V   + + H+  + D   +   +   ++S D+T+R+
Sbjct: 32  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683
           WD    +   R F GH + VMS+D    K  ++ S   +  I+ W+I     A +     
Sbjct: 92  WDVATGETYQR-FVGHKSDVMSVDI-DKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKT-LTLSAHDKL 742
             +Q+R  P        A ++ ++I+           + ++ WN+ + +       H+  
Sbjct: 150 WVSQVRVVPN-----EKADDDSVTIISAGND------KMVKAWNLNQFQIEADFIGHNSN 198
Query: 743 VSSLAASTVNGMVASASHDKCVKIW 767
           +++L AS    ++ASA  D  + +W
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLW 223

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 86/225 (38%), Gaps = 14/225 (6%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T  E + I  + + V +  F      +  G  D +  ++   +       E H  +I  +
Sbjct: 44  TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
              P+   + + S D TV++W+ EN     +TF GH   VM + F+P       S   + 
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTL 723
            ++ WS+             G +   F    G+       +Y  + D    +      T+
Sbjct: 164 TVKVWSL-------------GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 724 ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
           ++W+  T++   TL  H   VS         ++ S S D  +KIW
Sbjct: 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 86/225 (38%), Gaps = 14/225 (6%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T  E + I  + + V +  F      +  G  D +  ++   +       E H  +I  +
Sbjct: 44  TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
              P+   + + S D TV++W+ EN     +TF GH   VM + F+P       S   + 
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTL 723
            ++ WS+             G +   F    G+       +Y  + D    +      T+
Sbjct: 164 TVKVWSL-------------GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 724 ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
           ++W+  T++   TL  H   VS         ++ S S D  +KIW
Sbjct: 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 70/176 (39%), Gaps = 14/176 (7%)
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
            E H  +I  +   P+   + + S D TV++W+ EN     +TF GH   VM + F+P  
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712
                S   +  ++ WS+             G +   F    G+       +Y  + D  
Sbjct: 153 PSTFASGCLDRTVKVWSL-------------GQSTPNFTLTTGQERGVNYVDYYPLPDKP 199
Query: 713 TQVCRLKLQTLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
             +      T+++W+  T++   TL  H   VS         ++ S S D  +KIW
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 70/176 (39%), Gaps = 14/176 (7%)
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
            E H  +I  +   P+   + + S D TV++W+ EN     +TF GH   VM + F+P  
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712
                S   +  ++ WS+             G +   F    G+       +Y  + D  
Sbjct: 153 PSTFASGCLDRTVKVWSL-------------GQSTPNFTLTTGQERGVNYVDYYPLPDKP 199
Query: 713 TQVCRLKLQTLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
             +      T+++W+  T++   TL  H   VS         ++ S S D  +KIW
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
           ++   T ++ S  +  + K   +   D    +W  E+  +  TL+ HT  +  +R S   
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF 364
Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
             L +++AD ++R WD    DYS R F+ H T + ++      +++L S   N +   ++
Sbjct: 365 --LVSAAADGSIRGWDAN--DYS-RKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYN 418
Query: 670 INNGSC--AGVFKCQSGATQMRFQPRLGRILAAAIE----NYISILD 710
           + +G    A + K       + F+   G+ L AA+E    +++ ILD
Sbjct: 419 LRSGKLVHANILKDADQIWSVNFK---GKTLVAAVEKDGQSFLEILD 462

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 87/205 (42%), Gaps = 19/205 (9%)
Query: 569 LLATGGHDKKAVLWCT----ESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
           LL +   DK  + W      + F V   + + H+  + D   +   +   ++S D+T+R+
Sbjct: 32  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683
           WD    +   R F GH + V S+D    K   + S   +  I+ W+I     A +     
Sbjct: 92  WDVATGETYQR-FVGHKSDVXSVDI-DKKASXIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKT-LTLSAHDKL 742
             +Q+R  P        A ++ ++I+           + ++ WN+ + +       H+  
Sbjct: 150 WVSQVRVVPN-----EKADDDSVTIISAGND------KXVKAWNLNQFQIEADFIGHNSN 198
Query: 743 VSSLAASTVNGMVASASHDKCVKIW 767
           +++L AS    ++ASA  D  + +W
Sbjct: 199 INTLTASPDGTLIASAGKDGEIXLW 223

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 564 SPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSPSL---SRLATSS 616
           + + +   TGG D    +W      +++ ++STLE H+ W+ DV +SP++   S LA+ S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 617 ADRTVRVWDTEN 628
            DRT  +W  +N
Sbjct: 227 QDRTCIIWTQDN 238

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        RLAT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNGSCAGV 678
            +L SC  + ++  W   NG  + +
Sbjct: 68  TILASCSYDGKVLIWKEENGRWSQI 92

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        RLAT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 10  HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 654 DLLCSCDNNSEIRYWSINNG 673
            +L SC  + ++  W   NG
Sbjct: 70  TILASCSYDGKVLIWKEENG 89

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        RLAT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG 673
            +L SC  + ++  W   NG
Sbjct: 68  TILASCSYDGKVLIWKEENG 87

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 15/175 (8%)
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
           L  H + +T V+++     L + S D +  VW + N +  L T  GH+ T+ S+D     
Sbjct: 28  LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-RLGTLDGHTGTIWSIDVDCFT 86
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY------I 706
           +  +    + S I+ W ++NG C   +K      ++ F P  G    A ++N       I
Sbjct: 87  KYCVTGSADYS-IKLWDVSNGQCVATWKSPVPVKRVEFSP-CGNYFLAILDNVMKNPGSI 144
Query: 707 SILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKL-VSSLAASTVNGMVASASH 760
           +I ++E         T EL  ++E     +  H+ L  +++A  +  G    A H
Sbjct: 145 NIYEIERDSA-----THELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH 194

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        R+AT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG 673
            +L SC  + ++  W   NG
Sbjct: 68  TILASCSYDGKVMIWKEENG 87

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
           ++   T ++ S  +  + K   +   D    +W  E+  +  TL+ HT  +  +R S   
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF 364
Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
             L +++AD ++R WD    DYS R F+ H T + ++      +++L S   N +   ++
Sbjct: 365 --LVSAAADGSIRGWDAN--DYS-RKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYN 418
Query: 670 INNGSC--AGVFKCQSGATQMRFQPRLGRILAAAIE----NYISILD 710
           + +G    A + K       + F+   G+ L AA+E    +++ ILD
Sbjct: 419 LRSGKLVHANILKDADQIWSVNFK---GKTLVAAVEKDGQSFLEILD 462

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 30/224 (13%)
Query: 560 SCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRF-SPSLSRL 612
           SC + PD +  L TG  D+  VLW   +    S         HT  +  +   S + +  
Sbjct: 162 SCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMF 221
Query: 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672
            + S D TVR+WD      ++RT+ GH   + S+ F P  +      D+ +  R + +  
Sbjct: 222 ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT-CRLFDMRT 280
Query: 673 GSCAGVFKCQSG--------ATQMRFQPRLGRILAAAIENY-ISILDVETQVCRLKLQTL 723
           G    V+  +           T + F    GR+L A   N    + D       L L TL
Sbjct: 281 GHQLQVYNREPDRNDNELPIVTSVAFSIS-GRLLFAGYSNGDCYVWDTLLAEMVLNLGTL 339
Query: 724 ELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
           +            ++H+  +S L  S+    + + S DK +KIW
Sbjct: 340 Q------------NSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
           PA+  +    + + + +   TGG D    +W      +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
           ++   S  A+ S DRT  +W  +N
Sbjct: 215 TVLLRSYXASVSQDRTCIIWTQDN 238

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        R AT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG 673
            +L SC  + ++  W   NG
Sbjct: 68  TILASCSYDGKVXIWKEENG 87

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 86/213 (40%), Gaps = 20/213 (9%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
           VE    S DG+   +G  D +  LW   +         HT+ +  V FS    ++ ++S 
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 618 DRTVRVWDTENP-DYSL-RTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGS 674
           DRT+++W+T     Y++     GH   V  + F P+  +  + S   +  ++ W+++N  
Sbjct: 493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 675 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTL 734
                   +G          G + A+  ++ + +                LW++ E K L
Sbjct: 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVL----------------LWDLAEGKKL 596
Query: 735 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
                + ++ +L  S  N     A+ +  +KIW
Sbjct: 597 YSLEANSVIHALCFSP-NRYWLCAATEHGIKIW 628

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSP 607
           T  V S  ++PDG L A+ G D   VL+     T     E+       H+  +  + +SP
Sbjct: 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249
Query: 608 SLSRLATSSADRTVRVWD 625
             +++A++SAD+T+++W+
Sbjct: 250 DGTKIASASADKTIKIWN 267

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	768
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.98
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.98
2pm7_B	297	Protein transport protein SEC13, protein transport	99.98
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.98
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.98
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.98
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.98
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.98
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.97
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.96
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.96
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.96
2pm7_B	297	Protein transport protein SEC13, protein transport	99.96
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.96
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.96
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.96
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.96
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.96
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.95
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.95
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.95
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.95
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.95
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.95
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.95
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.95
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.95
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.95
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.95
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.95
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.95
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.95
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.95
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.95
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.95
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.95
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.95
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.94
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.94
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.94
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.94
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.94
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.93
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.93
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.93
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.93
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.93
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.93
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.93
3jro_A	753	Fusion protein of protein transport protein SEC13	99.93
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.93
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.92
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.92
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.92
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.91
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.91
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.91
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.91
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.9
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.9
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.9
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.9
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.88
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.87
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.86
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.86
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.84
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.83
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.82
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.81
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.81
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.8
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.79
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.79
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.78
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.78
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.78
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.77
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.77
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.75
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.75
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.75
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.75
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.73
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.73
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.71
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.69
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.69
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.69
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.68
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.67
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.67
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.66
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.66
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.65
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.64
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.64
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.63
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.63
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.61
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.61
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.58
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.57
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.57
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.56
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.54
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.52
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.49
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.48
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.47
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.46
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.46
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.46
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.46
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.45
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.44
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.44
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.42
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.39
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.37
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.37
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.37
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.36
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.36
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.36
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.34
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.32
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.31
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.31
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.29
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.29
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.29
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.27
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.26
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.26
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.24
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.24
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.24
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.23
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.19
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.19
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.18
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.14
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.13
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.12
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.11
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.09
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.08
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.06
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.05
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.03
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.03
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.02
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.99
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.96
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.9
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.88
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.86
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.86
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.84
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.79
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.77
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.71
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.69
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.68
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.65
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.65
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.64
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.64
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.63
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.62
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.59
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.58
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.53
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.51
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.49
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.49
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.49
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.49
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.47
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.46
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.42
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.4
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.34
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.31
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.28
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.23
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.21
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.14
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.12
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.11
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.08
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.02
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.02
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.02
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.0
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.96
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.95
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.94
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.93
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.92
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.9
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.9
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.88
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.86
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.86
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.77
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.74
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.73
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.73
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.71
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.65
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.64
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.63
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.62
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.61
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.61
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.57
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.55
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.54
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.54
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.54
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.53
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.51
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.5
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.47
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.43
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.37
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.31
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.28
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.17
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.15
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.05
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.99
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.93
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.9
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.85
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.84
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.83
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.73
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.68
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.55
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.49
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.46
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.37
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.37
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.31
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.27
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.23
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.18
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.08
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.02
3iot_A	449	Maltose-binding protein, huntingtin fusion protei;	95.89
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.85
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.84
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.75
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.72
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.72
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.71
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.67
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.59
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.47
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.44
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.42
3ott_A	758	Two-component system sensor histidine kinase; beta	95.37
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.31
3ott_A	758	Two-component system sensor histidine kinase; beta	95.25
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.23
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.17
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.79
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.74
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.63
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.32
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.09
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.01
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.78
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.77
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.63
3iot_A	449	Maltose-binding protein, huntingtin fusion protei;	93.2
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	92.71
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.21
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	91.68
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	91.65
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.15
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	90.32
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	90.12
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	89.94
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	89.65
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	88.65
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.54
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	87.42
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	87.38
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	85.95
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	85.3
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	85.24
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	84.74
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	84.2
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	81.34
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	81.08
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	80.82
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	80.29

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=8.3e-34  Score=316.28  Aligned_cols=246  Identities=24%  Similarity=0.452  Sum_probs=218.8

Q ss_pred             ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004207          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (768)
Q Consensus       502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~V  581 (768)
                      +++...++++|+.|++|++|+.....                   ....+.+|.+.|.+++|+|++++|++|+.|++|+|
T Consensus       116 ~~p~~~~l~s~s~Dg~i~vwd~~~~~-------------------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~i  176 (410)
T 1vyh_C          116 FHPVFSVMVSASEDATIKVWDYETGD-------------------FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL  176 (410)
T ss_dssp             ECSSSSEEEEEESSSCEEEEETTTCC-------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCc-------------------EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            34456799999999999999764331                   23567899999999999999999999999999999


Q ss_pred             EECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeC
Q 004207          582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (768)
Q Consensus       582 Wdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~  661 (768)
                      ||+.+++++.++.+|...|.+++|+|++.+|++|+.|++|++||++++.. +..+.+|...|.+++|++++. +|++|+.
T Consensus       177 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~g~-~l~s~s~  254 (410)
T 1vyh_C          177 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQDGT-LIASCSN  254 (410)
T ss_dssp             EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSS-EEEEEET
T ss_pred             EeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-EEEEeCCCccEEEEEECCCCC-EEEEEcC
Confidence            99999999999999999999999999999999999999999999998775 788899999999999999976 6779999


Q ss_pred             CCcEEEEECCCCeeEEEEec-CCCeeEEEEecC--------------------CCEEEEEEcCCeEEEEECCCceEeeec
Q 004207          662 NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR--------------------LGRILAAAIENYISILDVETQVCRLKL  720 (768)
Q Consensus       662 Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~--------------------~~~llags~Dg~I~IwD~~t~~~~~~~  720 (768)
                      |+.|++||++++.+...+.. ...|.+++|+|+                    +.++++++.|+.|++||++++.+...+
T Consensus       255 D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~  334 (410)
T 1vyh_C          255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL  334 (410)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence            99999999999999888865 566999999996                    568999999999999999987655433


Q ss_pred             c-------------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          721 Q-------------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       721 ~-------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .                         .|++||+..++.+ .+.+|...|++++|+|++.+|++|+.||+|+|||
T Consensus       335 ~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~  408 (410)
T 1vyh_C          335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  408 (410)
T ss_dssp             ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            2                         7999999877654 6779999999999999999999999999999997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2e-33  Score=299.76  Aligned_cols=237  Identities=21%  Similarity=0.313  Sum_probs=209.2

Q ss_pred             ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 004207          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD  576 (768)
Q Consensus       497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D  576 (768)
                      +....+++.+.+|++|+.|++|++|+....                   ..+..+..|..+|.+++|+|++++|++|+.|
T Consensus        16 V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d   76 (304)
T 2ynn_A           16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQ-------------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDD   76 (304)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred             eEEEEECCCCCEEEEEcCCCcEEEEECCCC-------------------ceeEEeeccCCcEEEEEEeCCCCEEEEECCC
Confidence            444556667889999999999999965332                   2456778999999999999999999999999


Q ss_pred             CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEE
Q 004207          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (768)
Q Consensus       577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lL  656 (768)
                      ++|+|||+.+++.+..+.+|...|++++|+|++.+|++|+.|++|++||++++......+.+|...|.+++|+|.+..+|
T Consensus        77 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l  156 (304)
T 2ynn_A           77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF  156 (304)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEE
T ss_pred             CEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEE
Confidence            99999999999999999999999999999999999999999999999999987776788999999999999999766688


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEEec--CCCeeEEEEec--CCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCc
Q 004207          657 CSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQP--RLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENK  732 (768)
Q Consensus       657 aSgs~Dg~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp--~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~  732 (768)
                      ++|+.|++|++||++.+.....+..  ...+..+.|+|  ++.+|++++.|+.|++||+++..+..              
T Consensus       157 ~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~--------------  222 (304)
T 2ynn_A          157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA--------------  222 (304)
T ss_dssp             EEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE--------------
T ss_pred             EEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce--------------
Confidence            8999999999999998777666553  35688889876  66789999999999999998876543              


Q ss_pred             eEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          733 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       733 ~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                        .+.+|...|.+++|+|++.+|++|+.||+|+|||
T Consensus       223 --~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd  256 (304)
T 2ynn_A          223 --TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN  256 (304)
T ss_dssp             --EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             --eeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence              3458999999999999999999999999999997

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=7.5e-33  Score=300.08  Aligned_cols=261  Identities=20%  Similarity=0.299  Sum_probs=223.6

Q ss_pred             cccCCCCCceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCcee
Q 004207          474 LQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF  545 (768)
Q Consensus       474 l~~s~s~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~  545 (768)
                      +..+++.+..+.+|.....        +...+....+.+.+.++++|+.|+.|++|......               ...
T Consensus        69 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~---------------~~~  133 (340)
T 1got_B           69 LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE---------------GNV  133 (340)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS---------------BSC
T ss_pred             EEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC---------------Ccc
Confidence            4566777888888876543        22233455677888999999999999999654321               122


Q ss_pred             eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      .....+.+|.+.|.++.|++++. |++++.|++|++||+.+++.+.++.+|...|.+++|+|++++|++|+.|++|++||
T Consensus       134 ~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd  212 (340)
T 1got_B          134 RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD  212 (340)
T ss_dssp             EEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            34566789999999999998775 88999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC---CCeeEEEEecCCCEEEEEEc
Q 004207          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAI  702 (768)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~---~~i~sl~fsp~~~~llags~  702 (768)
                      ++++.. +..+.+|...|.+++|+|++. +|++|+.|++|++||++++..+..+.+.   ..|.+++|+|++.++++++.
T Consensus       213 ~~~~~~-~~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  290 (340)
T 1got_B          213 VREGMC-RQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD  290 (340)
T ss_dssp             TTTCSE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCee-EEEEcCCcCCEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC
Confidence            998765 788899999999999999976 6679999999999999999888877653   36899999999999999999


Q ss_pred             CCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          703 ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       703 Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |+.|++||+.+....                ..+.+|...|++++|+|++.+|+||+.||.|+|||
T Consensus       291 d~~i~vwd~~~~~~~----------------~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          291 DFNCNVWDALKADRA----------------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TSEEEEEETTTCCEE----------------EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCeEEEEEcccCcEe----------------eEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999998876543                23458999999999999999999999999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=9.2e-33  Score=297.86  Aligned_cols=245  Identities=19%  Similarity=0.253  Sum_probs=217.3

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      ...+|++|+.|++|++|.....                 .......+.+|...|.+++|++++.++++++.|++|+|||+
T Consensus        47 ~~~~l~tgs~D~~v~vW~~~~~-----------------~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~  109 (321)
T 3ow8_A           47 NSETVVTGSLDDLVKVWKWRDE-----------------RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL  109 (321)
T ss_dssp             --CEEEEEETTSCEEEEEEETT-----------------EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             CCCEEEEEcCCCCEEEEECCCC-----------------CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            3578999999999999965321                 22344567899999999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc
Q 004207          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (768)
Q Consensus       585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~  664 (768)
                      .+++.+..+..|...+.+++|+|++++|++++.|++|++||+++++. ...+..|...|.+++|+|+++ +|++|+.|+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-~~~~~~~~~~v~~~~~spdg~-~lasg~~dg~  187 (321)
T 3ow8_A          110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-EYSLDTRGKFILSIAYSPDGK-YLASGAIDGI  187 (321)
T ss_dssp             TTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-EEEEECSSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             CCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-eEEecCCCceEEEEEECCCCC-EEEEEcCCCe
Confidence            99999999999999999999999999999999999999999998775 667778899999999999987 6669999999


Q ss_pred             EEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc----------------------
Q 004207          665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ----------------------  721 (768)
Q Consensus       665 I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~----------------------  721 (768)
                      |++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||+++......+.                      
T Consensus       188 i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s  267 (321)
T 3ow8_A          188 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS  267 (321)
T ss_dssp             EEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe
Confidence            99999999999998875 5679999999999999999999999999998765543322                      


Q ss_pred             ---eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 ---TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 ---~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                         .|++||+.+++++ .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus       268 ~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          268 SDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             CCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence               7999999988766 6779999999999999999999999999999997

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.8e-32  Score=294.57  Aligned_cols=256  Identities=18%  Similarity=0.269  Sum_probs=215.8

Q ss_pred             ccCccccC-CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 004207          497 SAPNQLTD-MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH  575 (768)
Q Consensus       497 ~~~~~l~~-~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~  575 (768)
                      +....+.+ ...++++|+.|++|++|......              ......+..+.+|...|.+++|+|++++|++|+.
T Consensus        20 V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~--------------~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~   85 (319)
T 3frx_A           20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDD--------------QKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW   85 (319)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEEEEEET--------------TEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEccCCCccEEEEecCCccEEEecCCCCC--------------ccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence            33334443 35799999999999999653211              1122456778999999999999999999999999


Q ss_pred             CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC---
Q 004207          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK---  652 (768)
Q Consensus       576 Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g---  652 (768)
                      |++|+|||+.+++.+..+.+|...|.+++|+|++.+|++|+.|++|+|||++.  ..+..+.+|...|.++.|+|..   
T Consensus        86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~  163 (319)
T 3frx_A           86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKAD  163 (319)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC----
T ss_pred             CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCC
Confidence            99999999999999999999999999999999999999999999999999974  3477888999999999999863   


Q ss_pred             --CeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc--------
Q 004207          653 --EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------  721 (768)
Q Consensus       653 --~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~--------  721 (768)
                        ..++++++.|+.|++||++++++...+.. ...|.+++|+|++.+|++++.|+.|++||+.+......+.        
T Consensus       164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~  243 (319)
T 3frx_A          164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL  243 (319)
T ss_dssp             --CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEE
T ss_pred             CCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEE
Confidence              33788999999999999999988887764 5679999999999999999999999999999876654432        


Q ss_pred             ---------------eeEEeecCCCceEE-e--------ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 ---------------TLELWNMTENKTLT-L--------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 ---------------~I~iwd~~~~~~~~-l--------~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                     .+++|++....... +        ..|...|.+++|+|+|++|++|+.||.|+|||
T Consensus       244 ~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd  314 (319)
T 3frx_A          244 AFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ  314 (319)
T ss_dssp             EECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence                           57788877655442 1        23567899999999999999999999999996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.6e-32  Score=289.35  Aligned_cols=250  Identities=24%  Similarity=0.440  Sum_probs=219.0

Q ss_pred             cCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 004207          498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK  577 (768)
Q Consensus       498 ~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg  577 (768)
                      ....+.+.+.++++|+.|+.|++|...+.                   .....+.+|...|.+++|+|++++|++|+.|+
T Consensus        27 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   87 (312)
T 4ery_A           27 SSVKFSPNGEWLASSSADKLIKIWGAYDG-------------------KFEKTISGHKLGISDVAWSSDSNLLVSASDDK   87 (312)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEECCCCCEEEEeeCCCeEEEEeCCCc-------------------ccchhhccCCCceEEEEEcCCCCEEEEECCCC
Confidence            33444556789999999999999965332                   23456789999999999999999999999999


Q ss_pred             cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEE
Q 004207          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC  657 (768)
Q Consensus       578 ~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLa  657 (768)
                      .|+|||+.+++++..+.+|...|.+++|+|++++|++|+.|++|++||+++++. +..+..|...|.+++|+|++. +|+
T Consensus        88 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~  165 (312)
T 4ery_A           88 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGS-LIV  165 (312)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSS-EEE
T ss_pred             EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-EEEecCCCCcEEEEEEcCCCC-EEE
Confidence            999999999999999999999999999999999999999999999999998775 778888999999999999977 667


Q ss_pred             EEeCCCcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc--------------
Q 004207          658 SCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------------  721 (768)
Q Consensus       658 Sgs~Dg~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~--------------  721 (768)
                      +++.|+.|++||+++++++..+..  ...+..++|+|++.++++++.|+.|++||+++..+...+.              
T Consensus       166 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  245 (312)
T 4ery_A          166 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS  245 (312)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEE
T ss_pred             EEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEE
Confidence            899999999999999988877643  4568899999999999999999999999998875443221              


Q ss_pred             --------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEE--CCCcEEEeC
Q 004207          722 --------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK  768 (768)
Q Consensus       722 --------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs--~DG~V~IWD  768 (768)
                                    .|++||+.+++.+ .+.+|...|.+++|+|++.+|++++  .|+.|+||+
T Consensus       246 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~  309 (312)
T 4ery_A          246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK  309 (312)
T ss_dssp             CSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred             eCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence                          7999999888766 6779999999999999999999997  699999995

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2e-32  Score=298.89  Aligned_cols=230  Identities=19%  Similarity=0.213  Sum_probs=193.5

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~  585 (768)
                      +..+++|+.|++|++|+...+.               ........+.+|.+.|++|+|+|++++|++|+.|++|+|||+.
T Consensus        93 d~~l~~~s~dg~v~lWd~~~~~---------------~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~  157 (344)
T 4gqb_B           93 ERGILVASDSGAVELWELDENE---------------TLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA  157 (344)
T ss_dssp             TTEEEEEETTSEEEEEEECTTS---------------SCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCeEEEEECCCEEEEEeccCCC---------------ceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            3567899999999999764431               1112233456999999999999999999999999999999999


Q ss_pred             CCeEEEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCeeEEEe--ecCCCCeEEEEEeCCCCeEEEEEeCC
Q 004207          586 SFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNN  662 (768)
Q Consensus       586 t~~~~~tl~~h~~~V~sl~fspdg-~~LaTgs~DgtIrVWDl~t~~~~~~~~--~~h~~~V~slafsp~g~~lLaSgs~D  662 (768)
                      +++++.++.+|...|++++|++++ .+|++|+.|++|+|||+++++. ...+  ..|...+.+++|+|++..+|++|+.|
T Consensus       158 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d  236 (344)
T 4gqb_B          158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP-ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN  236 (344)
T ss_dssp             TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC-EEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred             CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce-eeeeecceeeccceeeeecCCCCcceEEeccC
Confidence            999999999999999999999987 4789999999999999998775 4333  34566799999999888899999999


Q ss_pred             CcEEEEECCCCeeEEEEec-CCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCC
Q 004207          663 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD  740 (768)
Q Consensus       663 g~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~  740 (768)
                      +.|++||+++++++..+.. ...|.+++|+|++. +|++++.|++|+|||+.++++                 ..+.+|.
T Consensus       237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-----------------~~~~~H~  299 (344)
T 4gqb_B          237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-----------------FRSQAHR  299 (344)
T ss_dssp             SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-----------------EEECCCS
T ss_pred             CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-----------------EEEcCCC
Confidence            9999999999999998885 56799999999974 688899999999998876543                 3456899


Q ss_pred             CCeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 004207          741 KLVSSLAASTVNG-MVASASHDKCVKIWK  768 (768)
Q Consensus       741 ~~I~sla~spdg~-~LaSgs~DG~V~IWD  768 (768)
                      +.|++|+|+|++. +|+++|.||+|++|+
T Consensus       300 ~~V~~v~~sp~~~~llas~s~D~~v~~w~  328 (344)
T 4gqb_B          300 DFVRDATWSPLNHSLLTTVGWDHQVVHHV  328 (344)
T ss_dssp             SCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             CCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence            9999999999986 678999999999995

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.2e-32  Score=295.19  Aligned_cols=265  Identities=17%  Similarity=0.269  Sum_probs=223.8

Q ss_pred             ccccCCCCCceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCce
Q 004207          473 TLQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT  544 (768)
Q Consensus       473 ~l~~s~s~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~  544 (768)
                      ....+++.+..+.+|.....        ++..+....+.+.+.++++|+.|+.+++|.........             .
T Consensus        77 ~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~-------------~  143 (354)
T 2pbi_B           77 RRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN-------------M  143 (354)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC-------------S
T ss_pred             CEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc-------------c
Confidence            35567778889999976543        22334456678889999999999999999654332110             0


Q ss_pred             eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcC--CCCEEEEEeCCCcEE
Q 004207          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVR  622 (768)
Q Consensus       545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fsp--dg~~LaTgs~DgtIr  622 (768)
                      ......+.+|.+.|.+++|+|++..|++++.|++|+|||+++++++.++.+|...|.+++|+|  ++.+|++|+.||+|+
T Consensus       144 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~  223 (354)
T 2pbi_B          144 AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM  223 (354)
T ss_dssp             GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEE
T ss_pred             cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEE
Confidence            112344568999999999999999999999999999999999999999999999999999988  468999999999999


Q ss_pred             EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC---CCeeEEEEecCCCEEEE
Q 004207          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILA  699 (768)
Q Consensus       623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~---~~i~sl~fsp~~~~lla  699 (768)
                      +||++++.. +..+.+|...|.+++|+|++. +|++|+.|++|++||++.+..+..+..+   ..+.+++|+|++.++++
T Consensus       224 ~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~  301 (354)
T 2pbi_B          224 VWDMRSGQC-VQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA  301 (354)
T ss_dssp             EEETTTCCE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred             EEECCCCcE-EEEecCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence            999998775 788899999999999999976 6779999999999999998887777643   35789999999999999


Q ss_pred             EEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          700 AAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       700 gs~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ++.|+.|++||+.++...                ..+.+|...|++++|+|++.+|++|+.||+|+||+
T Consensus       302 g~~d~~i~vwd~~~~~~~----------------~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          302 GYNDYTINVWDVLKGSRV----------------SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EETTSCEEEEETTTCSEE----------------EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EECCCcEEEEECCCCceE----------------EEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            999999999999776543                23458999999999999999999999999999997

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.2e-33  Score=303.17  Aligned_cols=255  Identities=14%  Similarity=0.205  Sum_probs=202.2

Q ss_pred             ccCccccCCCCEEEeecC------CCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEE
Q 004207          497 SAPNQLTDMDRFVDDGSL------DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL  570 (768)
Q Consensus       497 ~~~~~l~~~~~~latGS~------D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~L  570 (768)
                      +...++.+.+++|++|+.      |+.|++|.........               .......+|...|++++|+|++. +
T Consensus        45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~---------------~~~~~~~~~~~~V~~~~~s~d~~-~  108 (357)
T 4g56_B           45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE---------------SLCTAGVQTEAGVTDVAWVSEKG-I  108 (357)
T ss_dssp             EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG---------------GGCSEEEECSSCEEEEEEETTTE-E
T ss_pred             EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce---------------eEecccCCCCCCEEEEEEcCCCC-E
Confidence            444555667789999987      5667777543332110               01122346888999999999986 5


Q ss_pred             EEEeCCCcEEEEECCCCeEE----EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEE
Q 004207          571 ATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (768)
Q Consensus       571 aSgs~Dg~I~VWdl~t~~~~----~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sl  646 (768)
                      ++++.||+|+|||+.+++..    ....+|...|++|+|+|++++|++|+.|++|+|||+++++. +..+.+|...|+++
T Consensus       109 l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~-~~~~~~h~~~v~~v  187 (357)
T 4g56_B          109 LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV-LKSYNAHSSEVNCV  187 (357)
T ss_dssp             EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEE
T ss_pred             EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-EEEEcCCCCCEEEE
Confidence            56788999999999887654    34457999999999999999999999999999999998764 78889999999999


Q ss_pred             EEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCceEeeecc-
Q 004207          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQ-  721 (768)
Q Consensus       647 afsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~~~~~~-  721 (768)
                      +|++++..++++++.|+.|++||+++++++..+..   ...+.+++|+|++. +|++++.|+.|++||+++..+...+. 
T Consensus       188 ~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~  267 (357)
T 4g56_B          188 AACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV  267 (357)
T ss_dssp             EECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC
T ss_pred             EEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec
Confidence            99999888888999999999999999887766543   45689999999854 67788899999999998765433322 


Q ss_pred             -------------------------eeEEeecCCCceEEeccCCCCeeEEEEeC-CCCEEEEEECCCcEEEeC
Q 004207          722 -------------------------TLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 -------------------------~I~iwd~~~~~~~~l~~H~~~I~sla~sp-dg~~LaSgs~DG~V~IWD  768 (768)
                                               +|++||+.+++++...+|.+.|++|+|+| ++.+|+|+|.||+|+|||
T Consensus       268 ~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~  340 (357)
T 4g56_B          268 HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH  340 (357)
T ss_dssp             CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence                                     79999999999998889999999999998 789999999999999996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.5e-31  Score=288.22  Aligned_cols=249  Identities=16%  Similarity=0.259  Sum_probs=205.7

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      .+.+|++|+.|++|++|.......            ..........+.+|...|.+++|+|++.+|++|+.|++|+|||+
T Consensus        38 d~~~l~sgs~D~~v~iWd~~~~~~------------~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~  105 (343)
T 2xzm_R           38 DSPVLISGSRDKTVMIWKLYEEEQ------------NGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDL  105 (343)
T ss_dssp             CCCEEEEEETTSCEEEEEECSSCC------------SSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEET
T ss_pred             CCCEEEEEcCCCEEEEEECCcCCc------------ccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence            678999999999999997643311            11122346678899999999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee---cCCCCeEEEEEeCCCC--------
Q 004207          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKE--------  653 (768)
Q Consensus       585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~---~h~~~V~slafsp~g~--------  653 (768)
                      .+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.. .. .....   +|...|.+++|+|++.        
T Consensus       106 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  183 (343)
T 2xzm_R          106 RTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-EC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPF  183 (343)
T ss_dssp             TSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSS
T ss_pred             CCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-Cc-eeeeecccCCCceeeeeeeccccccccccCCC
Confidence            99999999999999999999999999999999999999999984 32 22332   6889999999999863        


Q ss_pred             -eEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCce-Eeee-----------
Q 004207          654 -DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQV-CRLK-----------  719 (768)
Q Consensus       654 -~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~-~~~~-----------  719 (768)
                       .+|++++.|+.|++||. .......+.. ...|.+++|+|++.+|++++.|+.|++||+.... ....           
T Consensus       184 ~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~  262 (343)
T 2xzm_R          184 APYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIA  262 (343)
T ss_dssp             CCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEE
Confidence             47889999999999995 4566666654 5679999999999999999999999999994321 1111           


Q ss_pred             ------------cceeEEeecCCCceE---Eec-----------cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          720 ------------LQTLELWNMTENKTL---TLS-----------AHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       720 ------------~~~I~iwd~~~~~~~---~l~-----------~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                  ...+++|++.+....   .+.           +|...|++++|+|++.+|++|+.||.|+|||
T Consensus       263 ~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~  337 (343)
T 2xzm_R          263 FNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS  337 (343)
T ss_dssp             ECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred             ECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence                        117899998765432   222           6888999999999999999999999999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.3e-31  Score=287.08  Aligned_cols=253  Identities=22%  Similarity=0.337  Sum_probs=204.9

Q ss_pred             CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK  578 (768)
Q Consensus       499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~  578 (768)
                      ...+.+.+.+|++|+.|++|++|.....                ..........+|...|.+++|+|++++|++|+.|++
T Consensus        21 ~l~~sp~g~~las~~~D~~i~iw~~~~~----------------~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A           21 FLAWNPAGTLLASCGGDRRIRIWGTEGD----------------SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EEEECTTSSCEEEEETTSCEEEEEEETT----------------EEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEcCCC----------------cceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            3445556789999999999999954322                111122334789999999999999999999999999


Q ss_pred             EEEEECCCC--eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--eeEEEeecCCCCeEEEEEeCCCCe
Q 004207          579 AVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKED  654 (768)
Q Consensus       579 I~VWdl~t~--~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~--~~~~~~~~h~~~V~slafsp~g~~  654 (768)
                      |+|||+.+.  +++.++.+|...|.+++|+|++++|++|+.|++|+|||++++.  ..+..+.+|...|.+++|+|++. 
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-  163 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-  163 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-
Confidence            999998776  4677889999999999999999999999999999999998754  33567889999999999999977 


Q ss_pred             EEEEEeCCCcEEEEECCCCee--EEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCc---------------eE
Q 004207          655 LLCSCDNNSEIRYWSINNGSC--AGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ---------------VC  716 (768)
Q Consensus       655 lLaSgs~Dg~I~iWDl~sg~~--i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~---------------~~  716 (768)
                      +|++|+.|+.|++||++.+..  ...+.. ...|.+++|+|++.+|++++.|++|++||....               .+
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~  243 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC  243 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred             EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence            666999999999999988753  345543 567999999999999999999999999996321               00


Q ss_pred             e--------------------------eecceeEEeecCCCc-----e-----EEeccCCCCeeEEEEeCCC-CEEEEEE
Q 004207          717 R--------------------------LKLQTLELWNMTENK-----T-----LTLSAHDKLVSSLAASTVN-GMVASAS  759 (768)
Q Consensus       717 ~--------------------------~~~~~I~iwd~~~~~-----~-----~~l~~H~~~I~sla~spdg-~~LaSgs  759 (768)
                      .                          .....+++|+.....     .     ....+|...|++|+|+|++ .+||+|+
T Consensus       244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s  323 (345)
T 3fm0_A          244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS  323 (345)
T ss_dssp             EEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred             eEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence            0                          011268899876542     1     1235899999999999998 5999999


Q ss_pred             CCCcEEEeC
Q 004207          760 HDKCVKIWK  768 (768)
Q Consensus       760 ~DG~V~IWD  768 (768)
                      .||+|+|||
T Consensus       324 ~Dg~v~~W~  332 (345)
T 3fm0_A          324 DDGEVAFWK  332 (345)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCcEEEEE
Confidence            999999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.4e-30  Score=277.88  Aligned_cols=261  Identities=17%  Similarity=0.231  Sum_probs=221.7

Q ss_pred             cccccCccccCC-CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 004207          494 SLTSAPNQLTDM-DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT  572 (768)
Q Consensus       494 ~~~~~~~~l~~~-~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaS  572 (768)
                      ...+...++.+. +.+|++|+.|++|++|+.....              .........+.+|...|.+++|+|++++|++
T Consensus        38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~--------------~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s  103 (340)
T 4aow_A           38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE--------------TNYGIPQRALRGHSHFVSDVVISSDGQFALS  103 (340)
T ss_dssp             SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSS--------------SCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC--------------cccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence            334444555544 5799999999999999764431              1223456778899999999999999999999


Q ss_pred             EeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC
Q 004207          573 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK  652 (768)
Q Consensus       573 gs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g  652 (768)
                      ++.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||+...........+|...|.+++|++++
T Consensus       104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  183 (340)
T 4aow_A          104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS  183 (340)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred             EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence            99999999999999999888888999999999999999999999999999999987666566677899999999999875


Q ss_pred             C-eEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc---------
Q 004207          653 E-DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ---------  721 (768)
Q Consensus       653 ~-~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~---------  721 (768)
                      . .++++++.|+.|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||+++......+.         
T Consensus       184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~  263 (340)
T 4aow_A          184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC  263 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred             CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeee
Confidence            4 4677899999999999999999888875 5679999999999999999999999999999876654432         


Q ss_pred             --------------eeEEeecCCCceE----------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 --------------TLELWNMTENKTL----------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 --------------~I~iwd~~~~~~~----------~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                    .|++||+..+...          ...+|...|++++|+|++.+|++|+.||.|+|||
T Consensus       264 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~  334 (340)
T 4aow_A          264 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ  334 (340)
T ss_dssp             ECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence                          7899998876544          2346889999999999999999999999999997

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.3e-31  Score=295.07  Aligned_cols=271  Identities=21%  Similarity=0.306  Sum_probs=224.0

Q ss_pred             ccccCCCCCceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCce
Q 004207          473 TLQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT  544 (768)
Q Consensus       473 ~l~~s~s~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~  544 (768)
                      .+..+++.+..+.+|.....        +...+....+.+.+.++++|+.|+.+++|..........            .
T Consensus        79 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~------------~  146 (380)
T 3iz6_a           79 NWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG------------N  146 (380)
T ss_dssp             SCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCC------------S
T ss_pred             CEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccC------------C
Confidence            35567778889999986543        333455667888999999999999999997654321100            0


Q ss_pred             eeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEe-----ccCCCCEEEEEEcC-CCCEEEEEeC
Q 004207          545 FTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTL-----EEHTQWITDVRFSP-SLSRLATSSA  617 (768)
Q Consensus       545 ~~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl~t~~~~~tl-----~~h~~~V~sl~fsp-dg~~LaTgs~  617 (768)
                      ......+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++.+..+     .+|...|.+++|++ ++.+|++|+.
T Consensus       147 ~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~  226 (380)
T 3iz6_a          147 MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC  226 (380)
T ss_dssp             STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET
T ss_pred             ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC
Confidence            11224567999999999999964 57999999999999999999988877     67999999999987 7899999999


Q ss_pred             CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC--------CeeEEE
Q 004207          618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--------GATQMR  689 (768)
Q Consensus       618 DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~--------~i~sl~  689 (768)
                      |++|++||++.....+..+.+|...|.+++|+|++. +|++|+.|++|++||++++.++..+..+.        .+.+++
T Consensus       227 D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  305 (380)
T 3iz6_a          227 DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVA  305 (380)
T ss_dssp             TSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEE
T ss_pred             CCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEE
Confidence            999999999866556888999999999999999977 67799999999999999999988876421        378999


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          690 FQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       690 fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |+|++.++++++.|+.|++||+.+......+..            ...+|.+.|++++|+|++.+|++|+.||+|+||+
T Consensus       306 ~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~------------~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~  372 (380)
T 3iz6_a          306 FSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT------------LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA  372 (380)
T ss_dssp             ECSSSSEEEEECTTSCEEEEETTTCCEEEEECC------------SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             ECCCCCEEEEEECCCCEEEEECCCCceEEEEec------------ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence            999999999999999999999987665432210            1147999999999999999999999999999996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-31  Score=282.68  Aligned_cols=243  Identities=21%  Similarity=0.387  Sum_probs=192.3

Q ss_pred             EEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEe-cC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (768)
Q Consensus       508 ~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l-~~-H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~  585 (768)
                      +|++|+.|++|++|....+.                 +..+..+ .+ |.+.|.+|+|+|++++|++|+.|++|+|||+.
T Consensus        26 ~las~~~D~~i~lw~~~~~~-----------------~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~   88 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYDD-----------------FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE   88 (330)
T ss_dssp             EEEEEESSSCEEEEECSSSC-----------------CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred             EEEEEcCCCEEEEEEecCCC-----------------eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence            89999999999999654321                 1223333 34 99999999999999999999999999999985


Q ss_pred             C-------CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC---eeEEEeecCCCCeEEEEEeCCCCeE
Q 004207          586 S-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDL  655 (768)
Q Consensus       586 t-------~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~---~~~~~~~~h~~~V~slafsp~g~~l  655 (768)
                      .       .+++..+.+|...|++++|+|++++|++|+.|++|+|||++...   ..+..+.+|...|.+++|+|++. +
T Consensus        89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~  167 (330)
T 2hes_X           89 ESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-L  167 (330)
T ss_dssp             ------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-E
T ss_pred             cCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-E
Confidence            3       45677889999999999999999999999999999999995332   34677889999999999999976 6


Q ss_pred             EEEEeCCCcEEEEECCCC--eeEEEEec-CCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCc--------eEeee---
Q 004207          656 LCSCDNNSEIRYWSINNG--SCAGVFKC-QSGATQMRFQPR--LGRILAAAIENYISILDVETQ--------VCRLK---  719 (768)
Q Consensus       656 LaSgs~Dg~I~iWDl~sg--~~i~~~~~-~~~i~sl~fsp~--~~~llags~Dg~I~IwD~~t~--------~~~~~---  719 (768)
                      |++|+.|++|++||++++  +++..+.. ...|.+++|+|+  +..|++++.|++|++||+.+.        .+...   
T Consensus       168 l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~  247 (330)
T 2hes_X          168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD  247 (330)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS
T ss_pred             EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc
Confidence            779999999999999876  56777764 567999999998  668999999999999998643        11110   


Q ss_pred             ----------------------cceeEEeecCCCc--eE--EeccCCC-CeeEEEEeC--CCCEEEEEECCCcEEEeC
Q 004207          720 ----------------------LQTLELWNMTENK--TL--TLSAHDK-LVSSLAAST--VNGMVASASHDKCVKIWK  768 (768)
Q Consensus       720 ----------------------~~~I~iwd~~~~~--~~--~l~~H~~-~I~sla~sp--dg~~LaSgs~DG~V~IWD  768 (768)
                                            ...|++|+...+.  ..  ...+|.. .|++++|+|  ++.+|++|+.||+|+|||
T Consensus       248 ~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~  325 (330)
T 2hes_X          248 VHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWS  325 (330)
T ss_dssp             CCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred             ccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence                                  1178999987763  22  2357877 899999999  688999999999999996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=6e-31  Score=293.18  Aligned_cols=218  Identities=24%  Similarity=0.448  Sum_probs=197.9

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t  628 (768)
                      ..+.+|.++|+|++|+|++.+|++|+.||+|+|||+.+++...++.+|...|.+++|+|++++|++|+.|++|+|||+.+
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~  181 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG  181 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence            34679999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEE
Q 004207          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYIS  707 (768)
Q Consensus       629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~  707 (768)
                      ++. +..+.+|...|.+++|+|++. +|++|+.|++|++||++++.++..+.. ...|.++.|+|++.++++++.|+.|+
T Consensus       182 ~~~-~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~  259 (410)
T 1vyh_C          182 FEC-IRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  259 (410)
T ss_dssp             SCE-EECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             Cce-eEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence            664 788899999999999999977 566999999999999999999988875 45689999999999999999999999


Q ss_pred             EEECCCceEeee---------------------------------------------cceeEEeecCCCceE-EeccCCC
Q 004207          708 ILDVETQVCRLK---------------------------------------------LQTLELWNMTENKTL-TLSAHDK  741 (768)
Q Consensus       708 IwD~~t~~~~~~---------------------------------------------~~~I~iwd~~~~~~~-~l~~H~~  741 (768)
                      +||+.+..+...                                             ...|++||+.++.++ .+.+|..
T Consensus       260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~  339 (410)
T 1vyh_C          260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  339 (410)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence            999987643321                                             126999999888765 6779999


Q ss_pred             CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          742 LVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       742 ~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .|++++|+|++.+|++|+.||.|+|||
T Consensus       340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd  366 (410)
T 1vyh_C          340 WVRGVLFHSGGKFILSCADDKTLRVWD  366 (410)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEEC
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            999999999999999999999999997

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.7e-31  Score=291.55  Aligned_cols=241  Identities=17%  Similarity=0.249  Sum_probs=189.1

Q ss_pred             cccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 004207          501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV  580 (768)
Q Consensus       501 ~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~  580 (768)
                      .+.+.+.+|++++ |+++++|+..........    .....+.    ......|...|.+++|+|++ .|++|+.||+|+
T Consensus        37 ~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~----~~~~~~~----~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~  106 (344)
T 4gqb_B           37 RYRSDGALLLGAS-SLSGRCWAGSLWLFKDPC----AAPNEGF----CSAGVQTEAGVADLTWVGER-GILVASDSGAVE  106 (344)
T ss_dssp             EECTTSCEEEEEE-CCSSSCCCEEEEEESSGG----GTTCGGG----CSEEEEESSCEEEEEEETTT-EEEEEETTSEEE
T ss_pred             EECCCCCEEEEEe-CCceEEeeceeeeecccc----ccCCcce----eeeeeccCCCEEEEEEeCCC-eEEEEECCCEEE
Confidence            3445567888877 778888832110000000    0000011    11122456789999999985 688999999999


Q ss_pred             EEECCCCeEEE----EeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEE
Q 004207          581 LWCTESFTVKS----TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (768)
Q Consensus       581 VWdl~t~~~~~----tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lL  656 (768)
                      |||+.+++.+.    .+.+|...|++|+|+|++++|++|+.|++|+|||+++++. +..+.+|...|.+++|++++..+|
T Consensus       107 lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~-~~~~~~h~~~V~~~~~~~~~~~~l  185 (344)
T 4gqb_B          107 LWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV-LSSYRAHAAQVTCVAASPHKDSVF  185 (344)
T ss_dssp             EEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECSSCTTEE
T ss_pred             EEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-EEEEcCcCCceEEEEecCCCCCce
Confidence            99999876543    3458999999999999999999999999999999998764 888999999999999999998899


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCc
Q 004207          657 CSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENK  732 (768)
Q Consensus       657 aSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~-~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~  732 (768)
                      ++|+.|++|++||+++++++..+..   ...+.+++|+|++ .++++++.|+.|++||++++.++.              
T Consensus       186 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~--------------  251 (344)
T 4gqb_B          186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL--------------  251 (344)
T ss_dssp             EEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE--------------
T ss_pred             eeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE--------------
Confidence            9999999999999999998887653   3458899999965 467788999999999998765432              


Q ss_pred             eEEeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 004207          733 TLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK  768 (768)
Q Consensus       733 ~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IWD  768 (768)
                        .+.+|...|++|+|+|++ .+|++|+.||+|+|||
T Consensus       252 --~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd  286 (344)
T 4gqb_B          252 --SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD  286 (344)
T ss_dssp             --EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred             --EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEE
Confidence              455899999999999998 5899999999999997

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.98  E-value=5.1e-30  Score=283.61  Aligned_cols=270  Identities=21%  Similarity=0.358  Sum_probs=207.0

Q ss_pred             ccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 004207          495 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG  574 (768)
Q Consensus       495 ~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs  574 (768)
                      ..+....+.+.+.+|++|+ |+.+++|...++............. .............+...|.+++|+|++++|++|+
T Consensus        65 ~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~  142 (393)
T 1erj_A           65 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA  142 (393)
T ss_dssp             SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred             CEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence            3445566677888999987 7899999765442110000000000 0000000111223445699999999999999999


Q ss_pred             CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCe
Q 004207          575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  654 (768)
Q Consensus       575 ~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~  654 (768)
                      .|+.|+|||+.+++.+..+.+|...|++++|+|++.+|++++.|++|++||++++.. ...+. +...|.+++|+|....
T Consensus       143 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~  220 (393)
T 1erj_A          143 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLS-IEDGVTTVAVSPGDGK  220 (393)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSTTCC
T ss_pred             CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-EEEEE-cCCCcEEEEEECCCCC
Confidence            999999999999999999999999999999999999999999999999999998764 44444 5678999999994455


Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEe--------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCce-----------
Q 004207          655 LLCSCDNNSEIRYWSINNGSCAGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQV-----------  715 (768)
Q Consensus       655 lLaSgs~Dg~I~iWDl~sg~~i~~~~--------~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~-----------  715 (768)
                      +|++|+.|+.|++||++++.++..+.        +...|.+++|+|++.+|++++.|+.|++||+++..           
T Consensus       221 ~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~  300 (393)
T 1erj_A          221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG  300 (393)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCC
Confidence            78899999999999999998877762        34679999999999999999999999999987531           


Q ss_pred             -Eeee-------------------------cceeEEeecCCCceE-EeccCCCCeeEEEEeC------CCCEEEEEECCC
Q 004207          716 -CRLK-------------------------LQTLELWNMTENKTL-TLSAHDKLVSSLAAST------VNGMVASASHDK  762 (768)
Q Consensus       716 -~~~~-------------------------~~~I~iwd~~~~~~~-~l~~H~~~I~sla~sp------dg~~LaSgs~DG  762 (768)
                       +...                         ...|++||..++..+ .+.+|...|.+++|++      ++.+|++|+.||
T Consensus       301 ~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg  380 (393)
T 1erj_A          301 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC  380 (393)
T ss_dssp             CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred             cceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCC
Confidence             1100                         117999999887765 6779999999999986      678999999999


Q ss_pred             cEEEeC
Q 004207          763 CVKIWK  768 (768)
Q Consensus       763 ~V~IWD  768 (768)
                      +|+|||
T Consensus       381 ~i~iW~  386 (393)
T 1erj_A          381 KARIWK  386 (393)
T ss_dssp             EEEEEE
T ss_pred             cEEECc
Confidence            999996

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.98  E-value=2.1e-30  Score=307.74  Aligned_cols=249  Identities=17%  Similarity=0.270  Sum_probs=209.8

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      ...+|++|+.|++|++|.......              ........+.+|...|.+++|+|++++|++|+.|++|+|||+
T Consensus       394 ~~~~l~s~s~D~~i~~W~~~~~~~--------------~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~  459 (694)
T 3dm0_A          394 NADIIVSASRDKSIILWKLTKDDK--------------AYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL  459 (694)
T ss_dssp             CCSEEEEEETTSEEEEEECCCSTT--------------CSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CCCEEEEEeCCCcEEEEEccCCCc--------------ccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            357999999999999997643311              111234567899999999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEe---ecCCCCeEEEEEeCCCC-eEEEEEe
Q 004207          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKE-DLLCSCD  660 (768)
Q Consensus       585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~---~~h~~~V~slafsp~g~-~lLaSgs  660 (768)
                      .+++.+..+.+|...|.+++|+|++++|++|+.|++|+|||+..... ....   .+|...|.+++|+|++. .+|++|+
T Consensus       460 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s  538 (694)
T 3dm0_A          460 AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS  538 (694)
T ss_dssp             TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred             CCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEEe
Confidence            99999999999999999999999999999999999999999865332 2222   46888999999999863 4788999


Q ss_pred             CCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc------------------
Q 004207          661 NNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ------------------  721 (768)
Q Consensus       661 ~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~------------------  721 (768)
                      .|+.|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||+.++.+...+.                  
T Consensus       539 ~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  618 (694)
T 3dm0_A          539 WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLC  618 (694)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEE
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEE
Confidence            999999999999998888875 5679999999999999999999999999998876654332                  


Q ss_pred             -----eeEEeecCCCceEE-ecc-------------------CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 -----TLELWNMTENKTLT-LSA-------------------HDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 -----~I~iwd~~~~~~~~-l~~-------------------H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                           .|++||+.++..+. +..                   +...|++++|+|++.+|++|+.||+|+|||
T Consensus       619 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~  690 (694)
T 3dm0_A          619 AATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG  690 (694)
T ss_dssp             EEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEe
Confidence                 68999998877653 211                   112378999999999999999999999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.98  E-value=9.6e-31  Score=278.04  Aligned_cols=243  Identities=15%  Similarity=0.215  Sum_probs=196.8

Q ss_pred             cCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC--CCCEEEEEeC
Q 004207          498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGH  575 (768)
Q Consensus       498 ~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp--dg~~LaSgs~  575 (768)
                      ....+++.+++|++|+.|++|++|.....                 ....+..+.+|.++|++++|++  ++++|++|+.
T Consensus        13 ~~~~~s~~g~~las~s~D~~v~iw~~~~~-----------------~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~   75 (297)
T 2pm7_B           13 HDAVMDYYGKRMATCSSDKTIKIFEVEGE-----------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY   75 (297)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEBCSS-----------------CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEecCCC-----------------CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC
Confidence            34445566789999999999999965321                 1123466789999999999986  4899999999


Q ss_pred             CCcEEEEECCCCe--EEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCC-eeEEEeecCCCCeEEEEEeC
Q 004207          576 DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHP  650 (768)
Q Consensus       576 Dg~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVWDl~t~~-~~~~~~~~h~~~V~slafsp  650 (768)
                      |++|+|||+++++  .+..+.+|...|.+++|+|+  +.+|++++.|++|++||++++. .....+.+|...|.+++|+|
T Consensus        76 D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p  155 (297)
T 2pm7_B           76 DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  155 (297)
T ss_dssp             TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC
T ss_pred             CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecC
Confidence            9999999998764  56678889999999999997  8899999999999999998764 22467788999999999999


Q ss_pred             CC------------CeEEEEEeCCCcEEEEECCCCe----eEEEEec-CCCeeEEEEecCC---CEEEEEEcCCeEEEEE
Q 004207          651 SK------------EDLLCSCDNNSEIRYWSINNGS----CAGVFKC-QSGATQMRFQPRL---GRILAAAIENYISILD  710 (768)
Q Consensus       651 ~g------------~~lLaSgs~Dg~I~iWDl~sg~----~i~~~~~-~~~i~sl~fsp~~---~~llags~Dg~I~IwD  710 (768)
                      ++            ..+|++|+.|+.|++||++++.    +...+.. ...|.+++|+|++   .+|++++.|++|+|||
T Consensus       156 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd  235 (297)
T 2pm7_B          156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT  235 (297)
T ss_dssp             CC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence            73            3478899999999999998765    4555654 5679999999985   7899999999999999


Q ss_pred             CCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          711 VETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       711 ~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +++......   ..        .+....|...|.+++|+|++.+|++++.||.|+||+
T Consensus       236 ~~~~~~~~~---~~--------~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~  282 (297)
T 2pm7_B          236 QDNEQGPWK---KT--------LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (297)
T ss_dssp             ESSTTSCCE---EE--------ESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred             eCCCCCccc---ee--------eeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            876321000   00        011136788999999999999999999999999995

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.98  E-value=5.3e-30  Score=273.25  Aligned_cols=257  Identities=19%  Similarity=0.276  Sum_probs=213.3

Q ss_pred             cccCCCCCceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCcee
Q 004207          474 LQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF  545 (768)
Q Consensus       474 l~~s~s~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~  545 (768)
                      +...++.+..+.+|.....        +...+....+.+.+.++++|+.|++|++|+....                   
T Consensus        27 ~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~-------------------   87 (304)
T 2ynn_A           27 WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG-------------------   87 (304)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC-------------------
T ss_pred             EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC-------------------
Confidence            4455667788888876543        2223345556778899999999999999965432                   


Q ss_pred             eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEE
Q 004207          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRV  623 (768)
Q Consensus       546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~-~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrV  623 (768)
                      ..+..+.+|.+.|.+++|+|++.+|++|+.|++|+|||++++ .+...+.+|...|.+++|+| ++.+|++|+.|++|+|
T Consensus        88 ~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~i  167 (304)
T 2ynn_A           88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV  167 (304)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred             cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            235667899999999999999999999999999999999876 56678899999999999999 6789999999999999


Q ss_pred             EECCCCCeeEEEeecCCCCeEEEEEeCC-CCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEE
Q 004207          624 WDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA  701 (768)
Q Consensus       624 WDl~t~~~~~~~~~~h~~~V~slafsp~-g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags  701 (768)
                      ||++..........+|...|..++|+|. ...+|++|+.|++|++||+++++++..+.. ...|.+++|+|++.+|++++
T Consensus       168 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s  247 (304)
T 2ynn_A          168 WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS  247 (304)
T ss_dssp             EETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred             EECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEc
Confidence            9998877655566677788999999874 234788999999999999999999999885 56799999999999999999


Q ss_pred             cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCC--EEEEEECCCcEE
Q 004207          702 IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNG--MVASASHDKCVK  765 (768)
Q Consensus       702 ~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~--~LaSgs~DG~V~  765 (768)
                      .|+.|++||+.+.++..                .+..|...|.+++|+|++.  +|++|+.||.+.
T Consensus       248 ~Dg~i~iWd~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~  297 (304)
T 2ynn_A          248 EDGTLKIWNSSTYKVEK----------------TLNVGLERSWCIATHPTGRKNYIASGFDNGFTV  297 (304)
T ss_dssp             TTSCEEEEETTTCCEEE----------------EECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred             CCCeEEEEECCCCceee----------------eccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence            99999999998876543                3447888999999999885  688888877654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.98  E-value=3.7e-30  Score=278.90  Aligned_cols=230  Identities=23%  Similarity=0.391  Sum_probs=198.3

Q ss_pred             cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (768)
Q Consensus       503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VW  582 (768)
                      .+.+.++++|+.|++|++|.....                   ..+..+..|...|.+++|+|++++|++|+.|+.|+||
T Consensus        64 s~d~~~l~s~s~Dg~v~iWd~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           64 GTDSRLLLSASQDGKLIIWDSYTT-------------------NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CTTSSEEEEEETTTEEEEEETTTC-------------------CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCC-------------------CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            445679999999999999965332                   2355677899999999999999999999999999999


Q ss_pred             ECCCC----eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207          583 CTESF----TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (768)
Q Consensus       583 dl~t~----~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS  658 (768)
                      ++.+.    +....+.+|...|.++.|++++ .|++++.|++|++||++++.. +..+.+|...|.+++|+|++. +|++
T Consensus       125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~s  201 (340)
T 1got_B          125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAPDTR-LFVS  201 (340)
T ss_dssp             ETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSS-EEEE
T ss_pred             ECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcE-EEEEcCCCCceEEEEECCCCC-EEEE
Confidence            99865    4567788999999999999876 589999999999999998764 788899999999999999976 7779


Q ss_pred             EeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEec
Q 004207          659 CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLS  737 (768)
Q Consensus       659 gs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~  737 (768)
                      |+.|+.|++||++++.++..+.. ...|.+++|+|++.+|++++.|+.|++||+++......+              ...
T Consensus       202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~--------------~~~  267 (340)
T 1got_B          202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY--------------SHD  267 (340)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--------------CCT
T ss_pred             EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE--------------ccC
Confidence            99999999999999999988875 567999999999999999999999999999886543211              112


Q ss_pred             cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          738 AHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       738 ~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .+...|++++|+|++.+|++|+.||.|+|||
T Consensus       268 ~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd  298 (340)
T 1got_B          268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWD  298 (340)
T ss_dssp             TCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CcccceEEEEECCCCCEEEEECCCCeEEEEE
Confidence            3445799999999999999999999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.98  E-value=2.7e-30  Score=302.92  Aligned_cols=266  Identities=19%  Similarity=0.295  Sum_probs=222.8

Q ss_pred             ceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecC
Q 004207          482 KSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (768)
Q Consensus       482 ~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~  553 (768)
                      ..+..|.....        +...+...++.+.+.+|++|+.|++|++|+.....              .   .....+.+
T Consensus        39 ~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~--------------~---~~~~~~~~  101 (611)
T 1nr0_A           39 TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT--------------H---ILKTTIPV  101 (611)
T ss_dssp             TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT--------------C---CEEEEEEC
T ss_pred             CEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc--------------c---eeeEeecc
Confidence            46667765421        34445677788999999999999999999653221              0   12345678


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q 004207          554 STSKVESCHFSPDGKLLATGGHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTEN  628 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~D----g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~-~LaTgs~DgtIrVWDl~t  628 (768)
                      |.+.|.+++|+||+++|++++.+    ++|++||  +++...++.+|...|++++|+|++. +|++|+.|++|++||..+
T Consensus       102 ~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~  179 (611)
T 1nr0_A          102 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP  179 (611)
T ss_dssp             SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT
T ss_pred             cCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC
Confidence            99999999999999999998875    3677776  5666778899999999999999986 699999999999999987


Q ss_pred             CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--------cCCCeeEEEEecCCCEEEEE
Q 004207          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------CQSGATQMRFQPRLGRILAA  700 (768)
Q Consensus       629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~--------~~~~i~sl~fsp~~~~llag  700 (768)
                      .+. +..+.+|...|.+++|+|++. +|++|+.|++|++||+.+++++..+.        +...|.+++|+|++.+|+++
T Consensus       180 ~~~-~~~l~~H~~~V~~v~fspdg~-~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~  257 (611)
T 1nr0_A          180 FKF-KSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA  257 (611)
T ss_dssp             BEE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred             CeE-eeeeccccCceEEEEECCCCC-EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEE
Confidence            654 778899999999999999977 67799999999999999999988873        45679999999999999999


Q ss_pred             EcCCeEEEEECCCceEeeec--------------------------ceeEEeecCCCceE-EeccCCCCeeEEEEeCCCC
Q 004207          701 AIENYISILDVETQVCRLKL--------------------------QTLELWNMTENKTL-TLSAHDKLVSSLAASTVNG  753 (768)
Q Consensus       701 s~Dg~I~IwD~~t~~~~~~~--------------------------~~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~  753 (768)
                      +.|++|++||+.++.+...+                          ..+++|+...+... .+.+|...|++++|+|++.
T Consensus       258 s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~  337 (611)
T 1nr0_A          258 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK  337 (611)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             eCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC
Confidence            99999999999987655432                          25788998877654 5679999999999999999


Q ss_pred             EEEEEECCCcEEEeC
Q 004207          754 MVASASHDKCVKIWK  768 (768)
Q Consensus       754 ~LaSgs~DG~V~IWD  768 (768)
                      +|++++.||.|++||
T Consensus       338 ~l~s~s~D~~v~~Wd  352 (611)
T 1nr0_A          338 TLFSADAEGHINSWD  352 (611)
T ss_dssp             EEEEEETTSCEEEEE
T ss_pred             EEEEEeCCCcEEEEE
Confidence            999999999999996

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.98  E-value=1.4e-29  Score=268.94  Aligned_cols=256  Identities=18%  Similarity=0.261  Sum_probs=218.6

Q ss_pred             cccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 004207          496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH  575 (768)
Q Consensus       496 ~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~  575 (768)
                      .+....+.+.+.++++++ |+.|++|........             ..+ ......+|...|.+++|+|++++|++++.
T Consensus        53 ~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~-------------~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  117 (337)
T 1gxr_A           53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK-------------SPV-SQLDCLNRDNYIRSCKLLPDGCTLIVGGE  117 (337)
T ss_dssp             CCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC-------------SCS-EEEECSCTTSBEEEEEECTTSSEEEEEES
T ss_pred             ceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce-------------eee-ecccccCCCCcEEEEEEcCCCCEEEEEcC
Confidence            344455566788999999 999999976543210             011 11123378999999999999999999999


Q ss_pred             CCcEEEEECCCCe--EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCC
Q 004207          576 DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  653 (768)
Q Consensus       576 Dg~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~  653 (768)
                      |+.|++||+.+++  ....+..|...|.+++|+|++++|++++.|+.|++||+++++. +..+..|...|.+++|+|++.
T Consensus       118 d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~  196 (337)
T 1gxr_A          118 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISNDGT  196 (337)
T ss_dssp             SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSS
T ss_pred             CCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCce-eeeeecccCceEEEEECCCCC
Confidence            9999999999877  6677888999999999999999999999999999999998654 778888999999999999976


Q ss_pred             eEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc------------
Q 004207          654 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ------------  721 (768)
Q Consensus       654 ~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~------------  721 (768)
                       +|++++.|+.|++||+++++.+..+.....+.+++|+|++.++++++.++.|++||+.+........            
T Consensus       197 -~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~  275 (337)
T 1gxr_A          197 -KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY  275 (337)
T ss_dssp             -EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECT
T ss_pred             -EEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECC
Confidence             6668889999999999999999999888999999999999999999999999999998764332111            


Q ss_pred             ------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 ------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 ------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                  .+++||+..++......|...|.+++|+|++.+|++++.||.|+|||
T Consensus       276 ~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  334 (337)
T 1gxr_A          276 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence                        79999999998887778999999999999999999999999999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.2e-29  Score=270.45  Aligned_cols=251  Identities=14%  Similarity=0.195  Sum_probs=214.8

Q ss_pred             ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 004207          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD  576 (768)
Q Consensus       497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D  576 (768)
                      +....+.+.+.++++|+.|+.|++|+....                   ..+..+.+|...|++++|+|++++|++++.|
T Consensus        35 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   95 (369)
T 3zwl_B           35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNG-------------------ERLGTLDGHTGTIWSIDVDCFTKYCVTGSAD   95 (369)
T ss_dssp             EEEEEECTTSCEEEEEESSSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-------------------hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCC
Confidence            333444556789999999999999965432                   2456778999999999999999999999999


Q ss_pred             CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCe----------eEEEeecCCC
Q 004207          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDY----------SLRTFTGHST  641 (768)
Q Consensus       577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D-----gtIrVWDl~t~~~----------~~~~~~~h~~  641 (768)
                      |.|+|||+.+++.+..+. |...|.+++|+|++++|++++.+     +.|++||++....          .+..+..|..
T Consensus        96 g~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (369)
T 3zwl_B           96 YSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG  174 (369)
T ss_dssp             TEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred             CeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence            999999999999998887 88899999999999999999999     9999999976532          2345556666


Q ss_pred             --CeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-CeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEe
Q 004207          642 --TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR  717 (768)
Q Consensus       642 --~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~  717 (768)
                        .+.+++|+|++. +|++++.||.|++||+++ +..+..+.. ...|.+++|+|++.+|++++.|+.|++||+++....
T Consensus       175 ~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  253 (369)
T 3zwl_B          175 LDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL  253 (369)
T ss_dssp             CCCEEEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             ccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence              899999999977 566888999999999998 777777774 667999999999999999999999999999987655


Q ss_pred             eecc--------------------------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEE
Q 004207          718 LKLQ--------------------------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA  758 (768)
Q Consensus       718 ~~~~--------------------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSg  758 (768)
                      ..+.                                      .+++||...++.. .+.+|...|++++|+|++.+|+++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  333 (369)
T 3zwl_B          254 KKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASG  333 (369)
T ss_dssp             EEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEE
Confidence            4432                                      5889998887765 567899999999999999999999


Q ss_pred             ECCCcEEEeC
Q 004207          759 SHDKCVKIWK  768 (768)
Q Consensus       759 s~DG~V~IWD  768 (768)
                      +.||.|+|||
T Consensus       334 ~~dg~v~iw~  343 (369)
T 3zwl_B          334 GEDGFIRLHH  343 (369)
T ss_dssp             ETTSEEEEEE
T ss_pred             cCCCeEEEEE
Confidence            9999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.97  E-value=4.4e-30  Score=301.08  Aligned_cols=250  Identities=20%  Similarity=0.315  Sum_probs=203.4

Q ss_pred             CccccCCCC-EEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 004207          499 PNQLTDMDR-FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK  577 (768)
Q Consensus       499 ~~~l~~~~~-~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg  577 (768)
                      ...+.+.+. .+++|+.|++|++|...                   ..+....+.+|.+.|.+++|+||+++|++|+.|+
T Consensus       152 ~v~f~p~~~~~l~s~s~D~~v~lwd~~-------------------~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~  212 (611)
T 1nr0_A          152 SVDFKPSRPFRIISGSDDNTVAIFEGP-------------------PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG  212 (611)
T ss_dssp             EEEECSSSSCEEEEEETTSCEEEEETT-------------------TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECC-------------------CCeEeeeeccccCceEEEEECCCCCEEEEEECCC
Confidence            333444444 69999999999999532                   1234567889999999999999999999999999


Q ss_pred             cEEEEECCCCeEEEEec-------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee------------------
Q 004207          578 KAVLWCTESFTVKSTLE-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS------------------  632 (768)
Q Consensus       578 ~I~VWdl~t~~~~~tl~-------~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~------------------  632 (768)
                      +|+|||+.+++.+..+.       +|.+.|++++|+|++++|++++.|++|+|||+++++..                  
T Consensus       213 ~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~  292 (611)
T 1nr0_A          213 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW  292 (611)
T ss_dssp             CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE
T ss_pred             cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE
Confidence            99999999999988884       79999999999999999999999999999999875431                  


Q ss_pred             ------------------------EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEE---------
Q 004207          633 ------------------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---------  679 (768)
Q Consensus       633 ------------------------~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~---------  679 (768)
                                              ...+.+|...|++++|+|++. +|++++.|+.|++||+.++.+...+         
T Consensus       293 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~  371 (611)
T 1nr0_A          293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMIT  371 (611)
T ss_dssp             CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEE
T ss_pred             cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeecccCCcceEE
Confidence                                    234457999999999999987 6669999999999999876543221         


Q ss_pred             --------------------------------------------------------------------------ecCCCe
Q 004207          680 --------------------------------------------------------------------------KCQSGA  685 (768)
Q Consensus       680 --------------------------------------------------------------------------~~~~~i  685 (768)
                                                                                                .+...+
T Consensus       372 ~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v  451 (611)
T 1nr0_A          372 GIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNS  451 (611)
T ss_dssp             EEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCE
T ss_pred             EEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCc
Confidence                                                                                      011336


Q ss_pred             eEEEEecCCCEEEEEEcCCeEEEEECCCceEe--ee------------------------cceeEEeecCC-CceEE---
Q 004207          686 TQMRFQPRLGRILAAAIENYISILDVETQVCR--LK------------------------LQTLELWNMTE-NKTLT---  735 (768)
Q Consensus       686 ~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~--~~------------------------~~~I~iwd~~~-~~~~~---  735 (768)
                      .+++|+|++.+|++++.|+.|++||+.+....  ..                        ...+++|++.+ +++..   
T Consensus       452 ~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~  531 (611)
T 1nr0_A          452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS  531 (611)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred             eEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee
Confidence            78999999999999999999999998765321  10                        11789999887 44432   


Q ss_pred             eccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          736 LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       736 l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +..|...|++++|+|++.+|++|+.|++|+|||
T Consensus       532 ~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~  564 (611)
T 1nr0_A          532 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN  564 (611)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeecccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence            234999999999999999999999999999996

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=6e-31  Score=294.84  Aligned_cols=244  Identities=15%  Similarity=0.224  Sum_probs=200.3

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWC  583 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWd  583 (768)
                      .+.+|++|+.||+|++|+.....                 ...+..+.+|.+.|++|+|+| ++.+|++|+.||+|+|||
T Consensus       131 ~~~~lasGs~dg~i~lWd~~~~~-----------------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          131 HPSTVAVGSKGGDIMLWNFGIKD-----------------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             CTTCEEEEETTSCEEEECSSCCS-----------------CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             CCCEEEEEeCCCEEEEEECCCCC-----------------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            45789999999999999654321                 122345678999999999998 789999999999999999


Q ss_pred             CCCCeEEEEecc--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeC
Q 004207          584 TESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (768)
Q Consensus       584 l~t~~~~~tl~~--h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~  661 (768)
                      +++.........  +...+.+++|+|++.+|++|+.||+|++||++..  .+..+.+|...|.+|+|+|++..+|++|+.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~  271 (435)
T 4e54_B          194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASV  271 (435)
T ss_dssp             TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred             ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEecC
Confidence            987655444433  3446789999999999999999999999999753  366788999999999999999989999999


Q ss_pred             CCcEEEEECCCCeeEEEE----ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeec-----------------
Q 004207          662 NSEIRYWSINNGSCAGVF----KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-----------------  720 (768)
Q Consensus       662 Dg~I~iWDl~sg~~i~~~----~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~-----------------  720 (768)
                      |+.|++||+++.+....+    .+...|.+++|+|++.+|++++.|+.|+|||+.++.+...+                 
T Consensus       272 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (435)
T 4e54_B          272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAA  351 (435)
T ss_dssp             TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCE
T ss_pred             cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEE
Confidence            999999999987654433    34567999999999999999999999999999875332111                 


Q ss_pred             --------------------------ceeEEeecCCCceEE--eccCCCCeeEE-EEeCCCCEEEEEECCCcEEEeC
Q 004207          721 --------------------------QTLELWNMTENKTLT--LSAHDKLVSSL-AASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       721 --------------------------~~I~iwd~~~~~~~~--l~~H~~~I~sl-a~spdg~~LaSgs~DG~V~IWD  768 (768)
                                                ..|++||..+++.+.  ..+|...|.++ +|+|++.+|++|+ |+.|+|||
T Consensus       352 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~  427 (435)
T 4e54_B          352 WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWS  427 (435)
T ss_dssp             ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECC
T ss_pred             EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEE
Confidence                                      158899999888763  34788889887 6999999999876 78999997

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=2.9e-29  Score=288.96  Aligned_cols=268  Identities=26%  Similarity=0.430  Sum_probs=222.5

Q ss_pred             ccCCCCCceEEEEecCCC-------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeE
Q 004207          475 QHNGASSKSLLMFGSDGM-------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE  547 (768)
Q Consensus       475 ~~s~s~~~~~l~~~~~~~-------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~  547 (768)
                      ...++.+..+.+|...+.       +...+....+.+.+.++++++.|++|++|+...                    ..
T Consensus       277 l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~--------------------~~  336 (577)
T 2ymu_A          277 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--------------------QH  336 (577)
T ss_dssp             EEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--------------------CE
T ss_pred             EEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--------------------Ce
Confidence            344556667777765443       222333455677888999999999999995321                    13


Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (768)
Q Consensus       548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~  627 (768)
                      +..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++.|++|+|||..
T Consensus       337 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~  415 (577)
T 2ymu_A          337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  415 (577)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence            4566789999999999999999999999999999996 567888899999999999999999999999999999999964


Q ss_pred             CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeE
Q 004207          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYI  706 (768)
Q Consensus       628 t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I  706 (768)
                       ++ .+..+.+|...|++++|+|++. +|++++.|+.|++||+. ++++..+. +...|.+++|+|++.+|++++.|+.|
T Consensus       416 -~~-~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i  491 (577)
T 2ymu_A          416 -GQ-LLQTLTGHSSSVWGVAFSPDDQ-TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV  491 (577)
T ss_dssp             -CC-EEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             -CC-EEEEecCCCCCeEEEEECCCCC-EEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence             33 4788889999999999999976 66789999999999975 56666655 46779999999999999999999999


Q ss_pred             EEEECCCceEeeecc-------------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207          707 SILDVETQVCRLKLQ-------------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD  761 (768)
Q Consensus       707 ~IwD~~t~~~~~~~~-------------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D  761 (768)
                      ++||.... +...+.                         .|++||.....+..+.+|.+.|++|+|+||+++|+|++.|
T Consensus       492 ~iw~~~~~-~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D  570 (577)
T 2ymu_A          492 KLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSD  570 (577)
T ss_dssp             EEEETTSC-EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred             EEEcCCCC-EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence            99997543 222211                         7999998766666888999999999999999999999999


Q ss_pred             CcEEEeC
Q 004207          762 KCVKIWK  768 (768)
Q Consensus       762 G~V~IWD  768 (768)
                      ++|+|||
T Consensus       571 ~~i~~Wd  577 (577)
T 2ymu_A          571 KTVKLWN  577 (577)
T ss_dssp             SCEEEEC
T ss_pred             CEEEEeC
Confidence            9999998

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=1.6e-29  Score=276.40  Aligned_cols=246  Identities=15%  Similarity=0.184  Sum_probs=205.7

Q ss_pred             ccCCC-CEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcE
Q 004207          502 LTDMD-RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKA  579 (768)
Q Consensus       502 l~~~~-~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I  579 (768)
                      +.+.+ .++++|+.|+.|++|......                 ........+|...|.+++|+| ++.+|++++.|+.|
T Consensus        81 ~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i  143 (383)
T 3ei3_B           81 WHPTHPTTVAVGSKGGDIILWDYDVQN-----------------KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT  143 (383)
T ss_dssp             ECSSCTTEEEEEEBTSCEEEEETTSTT-----------------CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred             ECCCCCCEEEEEcCCCeEEEEeCCCcc-----------------cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence            34444 799999999999999664331                 112223357999999999999 78999999999999


Q ss_pred             EEEECCCCeEEEEeccC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEE
Q 004207          580 VLWCTESFTVKSTLEEH---TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (768)
Q Consensus       580 ~VWdl~t~~~~~tl~~h---~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lL  656 (768)
                      ++||+.+ ..+..+..|   ...|.+++|+|++++|++++.|+.|++||++ ++ .+..+.+|...|.+++|+|++..+|
T Consensus       144 ~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~-~~~~~~~h~~~v~~~~~~~~~~~~l  220 (383)
T 3ei3_B          144 TLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH-EIFKEKLHKAKVTHAEFNPRCDWLM  220 (383)
T ss_dssp             EEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC-EEEEEECSSSCEEEEEECSSCTTEE
T ss_pred             EEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC-EEEEeccCCCcEEEEEECCCCCCEE
Confidence            9999986 555555443   4789999999999999999999999999995 33 4788889999999999999988788


Q ss_pred             EEEeCCCcEEEEECCC----CeeEEEEecCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCCceEee-------------
Q 004207          657 CSCDNNSEIRYWSINN----GSCAGVFKCQSGATQMRFQP-RLGRILAAAIENYISILDVETQVCRL-------------  718 (768)
Q Consensus       657 aSgs~Dg~I~iWDl~s----g~~i~~~~~~~~i~sl~fsp-~~~~llags~Dg~I~IwD~~t~~~~~-------------  718 (768)
                      ++|+.|+.|++||+++    +.++..+.+...|.+++|+| ++.+|++++.|+.|++||+++.....             
T Consensus       221 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  300 (383)
T 3ei3_B          221 ATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHL  300 (383)
T ss_dssp             EEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTS
T ss_pred             EEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccc
Confidence            8999999999999998    67888887888999999999 99999999999999999997653311             


Q ss_pred             ---------------------------ecceeEEeecCCCceE-Eecc--CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          719 ---------------------------KLQTLELWNMTENKTL-TLSA--HDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       719 ---------------------------~~~~I~iwd~~~~~~~-~l~~--H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                                 ....|++||+.+++.+ .+.+  |...+.+++|+|++.+|++|+ ||.|+|||
T Consensus       301 ~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~  379 (383)
T 3ei3_B          301 TPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWN  379 (383)
T ss_dssp             CCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred             cceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEe
Confidence                                       1246899999888765 4544  567888889999999999997 99999996

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=1.2e-28  Score=274.73  Aligned_cols=242  Identities=20%  Similarity=0.349  Sum_probs=205.1

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~  585 (768)
                      .++|++|. |++|++|+...+.                 ...+..+.+|...|+||+|+|+|++||+|+.||+|+|||++
T Consensus       116 ~n~lAvgl-d~tV~lWd~~tg~-----------------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~  177 (420)
T 4gga_A          116 GNVLAVAL-DNSVYLWSASSGD-----------------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ  177 (420)
T ss_dssp             TSEEEEEE-TTEEEEEETTTCC-----------------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCEEEEEe-CCEEEEEECCCCC-----------------EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcC
Confidence            46788875 9999999654331                 12234456888999999999999999999999999999999


Q ss_pred             CCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcE
Q 004207          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (768)
Q Consensus       586 t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I  665 (768)
                      +++++..+.+|...|.++.|+  +.+|++|+.|+++++||.......+..+.+|...+.++.|+|++. ++++++.|+.|
T Consensus       178 ~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v  254 (420)
T 4gga_A          178 QQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLV  254 (420)
T ss_dssp             TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred             CCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeeccccc
Confidence            999999999999999999886  579999999999999999988877889999999999999999987 66689999999


Q ss_pred             EEEECCCCee----EEEE-ecCCCeeEEEEecCCCEEEE-E--EcCCeEEEEECCCceEeeecc----------------
Q 004207          666 RYWSINNGSC----AGVF-KCQSGATQMRFQPRLGRILA-A--AIENYISILDVETQVCRLKLQ----------------  721 (768)
Q Consensus       666 ~iWDl~sg~~----i~~~-~~~~~i~sl~fsp~~~~lla-g--s~Dg~I~IwD~~t~~~~~~~~----------------  721 (768)
                      ++||+.+++.    +... .+...|.+++|+|.+..+++ +  +.|++|++||+.++.+...+.                
T Consensus       255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~  334 (420)
T 4gga_A          255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKE  334 (420)
T ss_dssp             EEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTE
T ss_pred             eEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCe
Confidence            9999987653    2233 34677999999998766543 3  368999999999876554432                


Q ss_pred             ----------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 ----------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 ----------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                .|++||+.+++.+ ++.+|.+.|++|+|+|++.+|+||+.||+|+|||
T Consensus       335 lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd  392 (420)
T 4gga_A          335 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  392 (420)
T ss_dssp             EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             EEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence                      6999999887765 6789999999999999999999999999999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=4.3e-29  Score=272.63  Aligned_cols=233  Identities=21%  Similarity=0.358  Sum_probs=197.9

Q ss_pred             ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004207          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (768)
Q Consensus       502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~V  581 (768)
                      +.+.+.+|++|+.|++|++|+....                   .....+..|...|.+++|+|++.+|++|+.|+.|++
T Consensus        72 ~s~d~~~l~s~s~Dg~v~vWd~~~~-------------------~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v  132 (354)
T 2pbi_B           72 WCKDKRRIVSSSQDGKVIVWDSFTT-------------------NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV  132 (354)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTC-------------------CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCC-------------------CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence            3445679999999999999964322                   234456678899999999999999999999999999


Q ss_pred             EECCCC------eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC-Ce
Q 004207          582 WCTESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-ED  654 (768)
Q Consensus       582 Wdl~t~------~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g-~~  654 (768)
                      |++...      .....+.+|...|.+++|+|++..|++++.|++|++||+++++. +..+.+|...|.+++|+|+. ..
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~g~  211 (354)
T 2pbi_B          133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL-LQSFHGHGADVLCLDLAPSETGN  211 (354)
T ss_dssp             EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECCCSSCC
T ss_pred             EEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE-EEEEcCCCCCeEEEEEEeCCCCC
Confidence            998643      34556778999999999999999999999999999999998775 78889999999999999853 35


Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCce
Q 004207          655 LLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKT  733 (768)
Q Consensus       655 lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~  733 (768)
                      +|++|+.|+.|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||+++......      +.      
T Consensus       212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~------~~------  279 (354)
T 2pbi_B          212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI------YS------  279 (354)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE------EC------
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE------Ec------
Confidence            788999999999999999999988875 56799999999999999999999999999988654321      11      


Q ss_pred             EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          734 LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       734 ~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                        ...+...+.+++|+|++.+|++|+.|+.|+|||
T Consensus       280 --~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd  312 (354)
T 2pbi_B          280 --KESIIFGASSVDFSLSGRLLFAGYNDYTINVWD  312 (354)
T ss_dssp             --CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             --CCCcccceeEEEEeCCCCEEEEEECCCcEEEEE
Confidence              112345689999999999999999999999996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.97  E-value=4.9e-29  Score=268.68  Aligned_cols=220  Identities=22%  Similarity=0.350  Sum_probs=193.9

Q ss_pred             EEEEecCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCeE--EEEeccCCCCEEEEEEcCCCCEEEEEeCCCc
Q 004207          547 EFQLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRT  620 (768)
Q Consensus       547 ~~~~l~~H~~~I~sl~fSpd----g~~LaSgs~Dg~I~VWdl~t~~~--~~tl~~h~~~V~sl~fspdg~~LaTgs~Dgt  620 (768)
                      .++.+.+|.+.|++|+|+++    +.+|++|+.|++|+||++.+.+.  ...+.+|...|.+++|++++.++++++.|++
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~  103 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH  103 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            35667899999999999984    66899999999999999887654  4568999999999999999999999999999


Q ss_pred             EEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEE
Q 004207          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA  699 (768)
Q Consensus       621 IrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~lla  699 (768)
                      |+|||+++++. +..+..|...+.+++|+|++. +|++|+.|+.|++||+++++....+.. ...+.+++|+|++.+|++
T Consensus       104 i~lWd~~~~~~-~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las  181 (321)
T 3ow8_A          104 IRLWDLENGKQ-IKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS  181 (321)
T ss_dssp             EEEEETTTTEE-EEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred             EEEEECCCCCE-EEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence            99999998765 777888889999999999987 666899999999999999988887775 456999999999999999


Q ss_pred             EEcCCeEEEEECCCceEeeecc-------------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCC
Q 004207          700 AAIENYISILDVETQVCRLKLQ-------------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNG  753 (768)
Q Consensus       700 gs~Dg~I~IwD~~t~~~~~~~~-------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~  753 (768)
                      ++.|+.|++||++++.....+.                         .|++||+..+... .+.+|...|.+++|+|++.
T Consensus       182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~  261 (321)
T 3ow8_A          182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT  261 (321)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred             EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCC
Confidence            9999999999999887654432                         7999999877655 6779999999999999999


Q ss_pred             EEEEEECCCcEEEeC
Q 004207          754 MVASASHDKCVKIWK  768 (768)
Q Consensus       754 ~LaSgs~DG~V~IWD  768 (768)
                      +|++++.||+|+|||
T Consensus       262 ~l~s~s~D~~v~iwd  276 (321)
T 3ow8_A          262 HFVSSSSDKSVKVWD  276 (321)
T ss_dssp             EEEEEETTSCEEEEE
T ss_pred             EEEEEeCCCcEEEEe
Confidence            999999999999996

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=7.5e-29  Score=267.84  Aligned_cols=252  Identities=18%  Similarity=0.242  Sum_probs=208.1

Q ss_pred             CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK  578 (768)
Q Consensus       499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~  578 (768)
                      ...+.+.+.++++|+.|+.|++|.....                 .+..+..+.+|...|.+++|+|++++|++++.|+.
T Consensus        13 ~~~~s~~~~~l~~~~~d~~v~i~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~   75 (372)
T 1k8k_C           13 CHAWNKDRTQIAICPNNHEVHIYEKSGN-----------------KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN   75 (372)
T ss_dssp             EEEECTTSSEEEEECSSSEEEEEEEETT-----------------EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEeCCCC-----------------cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCe
Confidence            3344556789999999999999954321                 23467778899999999999999999999999999


Q ss_pred             EEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe---eEEEeecCCCCeEEEEEeCCCC
Q 004207          579 AVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKE  653 (768)
Q Consensus       579 I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~---~~~~~~~h~~~V~slafsp~g~  653 (768)
                      |++||+++++....  +..|...|.+++|+|++++|++++.|+.|++||++....   ......+|...|.+++|+|++.
T Consensus        76 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  155 (372)
T 1k8k_C           76 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV  155 (372)
T ss_dssp             EEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS
T ss_pred             EEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC
Confidence            99999988875544  467899999999999999999999999999999987663   2344467899999999999976


Q ss_pred             eEEEEEeCCCcEEEEECC------------------CCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004207          654 DLLCSCDNNSEIRYWSIN------------------NGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (768)
Q Consensus       654 ~lLaSgs~Dg~I~iWDl~------------------sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~  714 (768)
                       +|++++.|+.|++||++                  .++++..+.. ...+.+++|+|++.+|++++.|+.|++||+++.
T Consensus       156 -~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  234 (372)
T 1k8k_C          156 -LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK  234 (372)
T ss_dssp             -EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             -EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence             66688999999999954                  5777777754 567999999999999999999999999999876


Q ss_pred             eEeeecc------------------------eeEEeecCC--Cce-----------------------------------
Q 004207          715 VCRLKLQ------------------------TLELWNMTE--NKT-----------------------------------  733 (768)
Q Consensus       715 ~~~~~~~------------------------~I~iwd~~~--~~~-----------------------------------  733 (768)
                      .....+.                        .+++|++..  +..                                   
T Consensus       235 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (372)
T 1k8k_C          235 MAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS  314 (372)
T ss_dssp             TEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-----
T ss_pred             ceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccC
Confidence            5544332                        788898876  321                                   


Q ss_pred             ----EEe-ccCCCCeeEEEEe-CCC---CEEEEEECCCcEEEeC
Q 004207          734 ----LTL-SAHDKLVSSLAAS-TVN---GMVASASHDKCVKIWK  768 (768)
Q Consensus       734 ----~~l-~~H~~~I~sla~s-pdg---~~LaSgs~DG~V~IWD  768 (768)
                          ..+ .+|...|++++|+ +++   .+|+||+.||.|+|||
T Consensus       315 ~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~  358 (372)
T 1k8k_C          315 AAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  358 (372)
T ss_dssp             ----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             ccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence                222 4899999999976 666   8999999999999996

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=5e-30  Score=275.23  Aligned_cols=241  Identities=15%  Similarity=0.206  Sum_probs=194.4

Q ss_pred             CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC--CCCEEEEEeCC
Q 004207          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHD  576 (768)
Q Consensus       499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp--dg~~LaSgs~D  576 (768)
                      ...+.+.+.+|++|+.|++|++|+....                 ....+..+.+|.+.|++++|++  ++++|++|+.|
T Consensus        18 ~v~~s~~g~~lasgs~D~~v~lwd~~~~-----------------~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D   80 (316)
T 3bg1_A           18 DAQMDYYGTRLATCSSDRSVKIFDVRNG-----------------GQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD   80 (316)
T ss_dssp             EEEECGGGCEEEEEETTTEEEEEEEETT-----------------EEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred             EeeEcCCCCEEEEEeCCCeEEEEEecCC-----------------CcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC
Confidence            3344455679999999999999965321                 1124567889999999999986  48999999999


Q ss_pred             CcEEEEECCCC--eEEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCe--eEEEeecCCCCeEEEEEeC
Q 004207          577 KKAVLWCTESF--TVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHP  650 (768)
Q Consensus       577 g~I~VWdl~t~--~~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVWDl~t~~~--~~~~~~~h~~~V~slafsp  650 (768)
                      ++|+|||++++  +....+.+|...|.+++|+|+  +.+|++|+.|++|++||++....  ....+.+|...|.+++|+|
T Consensus        81 ~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  160 (316)
T 3bg1_A           81 RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP  160 (316)
T ss_dssp             SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred             CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence            99999999886  466778899999999999997  78999999999999999987532  2345678999999999999


Q ss_pred             CC----------------CeEEEEEeCCCcEEEEECCCC---eeEEEEec-CCCeeEEEEecCC----CEEEEEEcCCeE
Q 004207          651 SK----------------EDLLCSCDNNSEIRYWSINNG---SCAGVFKC-QSGATQMRFQPRL----GRILAAAIENYI  706 (768)
Q Consensus       651 ~g----------------~~lLaSgs~Dg~I~iWDl~sg---~~i~~~~~-~~~i~sl~fsp~~----~~llags~Dg~I  706 (768)
                      +.                ..+|++|+.|+.|++||++..   .++..+.. ...|.+++|+|++    .+|++++.|++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v  240 (316)
T 3bg1_A          161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV  240 (316)
T ss_dssp             CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEE
T ss_pred             ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeE
Confidence            73                246889999999999999765   34555553 4669999999986    789999999999


Q ss_pred             EEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          707 SILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       707 ~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ++||+.+.....            .....+..|...|.+++|+|++.+|++++.||.|+||+
T Consensus       241 ~iw~~~~~~~~~------------~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~  290 (316)
T 3bg1_A          241 FIWTCDDASSNT------------WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK  290 (316)
T ss_dssp             EEEECSSTTCCC------------CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred             EEEEccCccccc------------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence            999987631100            00112346888999999999999999999999999996

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=5.1e-29  Score=263.88  Aligned_cols=254  Identities=20%  Similarity=0.267  Sum_probs=199.8

Q ss_pred             ccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC--CCCEEEEEeCCC
Q 004207          500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDK  577 (768)
Q Consensus       500 ~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp--dg~~LaSgs~Dg  577 (768)
                      ..+.+.+.++++|+.|+.|++|.....               ...+.....+.+|...|++++|+|  ++.+|++|+.||
T Consensus        17 ~~~~~~~~~l~~~~~dg~i~iw~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg   81 (351)
T 3f3f_A           17 VVYDFYGRHVATCSSDQHIKVFKLDKD---------------TSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK   81 (351)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEEECSS---------------SCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             EEEcCCCCEEEEeeCCCeEEEEECCCC---------------CCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence            334446679999999999999966432               122345677789999999999999  699999999999


Q ss_pred             cEEEEECCCC---------eEEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCeeEE------------
Q 004207          578 KAVLWCTESF---------TVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLR------------  634 (768)
Q Consensus       578 ~I~VWdl~t~---------~~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVWDl~t~~~~~~------------  634 (768)
                      .|+|||+.++         +.+..+..|...|.+++|+|+  +.+|++++.||+|++||+++++....            
T Consensus        82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  161 (351)
T 3f3f_A           82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI  161 (351)
T ss_dssp             CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred             eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence            9999999886         667888899999999999999  99999999999999999987653111            


Q ss_pred             EeecCCCCeEEEEEeCC--CCeEEEEEeCCCcEEEEECCCCee--EEEEe-cCCCeeEEEEecCC----CEEEEEEcCCe
Q 004207          635 TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSC--AGVFK-CQSGATQMRFQPRL----GRILAAAIENY  705 (768)
Q Consensus       635 ~~~~h~~~V~slafsp~--g~~lLaSgs~Dg~I~iWDl~sg~~--i~~~~-~~~~i~sl~fsp~~----~~llags~Dg~  705 (768)
                      ....|...+.+++|+|+  ...++++++.|+.+.+|+...+..  +..+. +...|.+++|+|++    .+|++++.|+.
T Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~  241 (351)
T 3f3f_A          162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR  241 (351)
T ss_dssp             CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred             ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence            01257889999999997  344777899999998888887765  44444 35679999999998    78999999999


Q ss_pred             EEEEECCCceEeeecc-----------------------------eeEEeecCCCc-eEEeccCCCCeeEEEEeCCCCEE
Q 004207          706 ISILDVETQVCRLKLQ-----------------------------TLELWNMTENK-TLTLSAHDKLVSSLAASTVNGMV  755 (768)
Q Consensus       706 I~IwD~~t~~~~~~~~-----------------------------~I~iwd~~~~~-~~~l~~H~~~I~sla~spdg~~L  755 (768)
                      |++||+++........                             .+.+|+..... ...+.+|...|++++|+|++.+|
T Consensus       242 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l  321 (351)
T 3f3f_A          242 IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTIL  321 (351)
T ss_dssp             EEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCE
T ss_pred             EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEE
Confidence            9999998753221110                             22333333323 23567899999999999999999


Q ss_pred             EEEECCCcEEEeC
Q 004207          756 ASASHDKCVKIWK  768 (768)
Q Consensus       756 aSgs~DG~V~IWD  768 (768)
                      ++++.||.|+|||
T Consensus       322 ~s~~~dg~v~iw~  334 (351)
T 3f3f_A          322 SSAGDDGKVRLWK  334 (351)
T ss_dssp             EEEETTSCEEEEE
T ss_pred             EEecCCCcEEEEe
Confidence            9999999999996

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=3e-28  Score=265.76  Aligned_cols=258  Identities=15%  Similarity=0.263  Sum_probs=212.2

Q ss_pred             cCccccC-CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEE-----EecCCCCCeEEEEEcC-CCCEE
Q 004207          498 APNQLTD-MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ-----LIPASTSKVESCHFSP-DGKLL  570 (768)
Q Consensus       498 ~~~~l~~-~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~-----~l~~H~~~I~sl~fSp-dg~~L  570 (768)
                      ....+.+ .+.++++|+.|+.|++|...........           ......     ...+|...|++++|+| ++.+|
T Consensus        47 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  115 (408)
T 4a11_B           47 NTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY-----------TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF  115 (408)
T ss_dssp             EEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE-----------EECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred             EEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE-----------eccccccccccccccCCCcEEEEEEccCCCcEE
Confidence            3444455 6789999999999999976544211110           001111     1246999999999999 77899


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEE
Q 004207          571 ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD  647 (768)
Q Consensus       571 aSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd---g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sla  647 (768)
                      ++++.||.|++||+.+++.+..+. +...+.++.|++.   +.+|++++.|+.|++||++++.. +..+.+|...|.+++
T Consensus       116 ~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~v~~~~  193 (408)
T 4a11_B          116 TSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQEILAVS  193 (408)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEECCCCSCEEEEE
T ss_pred             EEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeeecCCCCcEEEEE
Confidence            999999999999999999888776 6788999999984   45999999999999999998765 778888999999999


Q ss_pred             EeCCCCeEEEEEeCCCcEEEEECCCCe-eEEEE----------------ecCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 004207          648 FHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF----------------KCQSGATQMRFQPRLGRILAAAIENYISILD  710 (768)
Q Consensus       648 fsp~g~~lLaSgs~Dg~I~iWDl~sg~-~i~~~----------------~~~~~i~sl~fsp~~~~llags~Dg~I~IwD  710 (768)
                      |+|++..+|++|+.||.|++||++++. ++..+                .+...|.+++|+|++.+|++++.|+.|++||
T Consensus       194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  273 (408)
T 4a11_B          194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN  273 (408)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence            999998888899999999999998765 34433                2356799999999999999999999999999


Q ss_pred             CCCceEeee------------------------------cceeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEE
Q 004207          711 VETQVCRLK------------------------------LQTLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS  759 (768)
Q Consensus       711 ~~t~~~~~~------------------------------~~~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs  759 (768)
                      +.+......                              ...+.+||+.++..+ .+.+|...|++++|+|++.+|++++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  353 (408)
T 4a11_B          274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS  353 (408)
T ss_dssp             TTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred             CCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEEC
Confidence            987653221                              127999999887766 5678999999999999999999999


Q ss_pred             CCCcEEEeC
Q 004207          760 HDKCVKIWK  768 (768)
Q Consensus       760 ~DG~V~IWD  768 (768)
                      .||.|+|||
T Consensus       354 ~dg~i~iw~  362 (408)
T 4a11_B          354 RDCNILAWV  362 (408)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCeEEEEe
Confidence            999999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.97  E-value=7.5e-29  Score=269.36  Aligned_cols=209  Identities=26%  Similarity=0.465  Sum_probs=180.1

Q ss_pred             eeEEEEecCCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE---EeccCCCCEEEEEEcCCCCEEEEEeCCCc
Q 004207          545 FTEFQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSPSLSRLATSSADRT  620 (768)
Q Consensus       545 ~~~~~~l~~H~~-~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~---tl~~h~~~V~sl~fspdg~~LaTgs~Dgt  620 (768)
                      +..+..+.+|.+ .|.+++|+|+|++||+|+.|++|+|||+.+++...   ...+|...|.+++|+|++++|++|+.|++
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            456788899988 99999999999999999999999999998876432   23689999999999999999999999999


Q ss_pred             EEEEECCCCC-eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe---eEEEEec-CCCeeEEEEecCCC
Q 004207          621 VRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFKC-QSGATQMRFQPRLG  695 (768)
Q Consensus       621 IrVWDl~t~~-~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~---~i~~~~~-~~~i~sl~fsp~~~  695 (768)
                      |+|||+..+. ..+..+.+|...|.+++|+|++. +|++|+.|+.|++||++.+.   ++..+.. ...|.+++|+|++.
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence            9999998765 34678899999999999999976 67799999999999998764   3444443 56799999999999


Q ss_pred             EEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          696 RILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       696 ~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +|++++.|+.|++||.++.....              ...+.+|...|++++|+|++.+|++++.||+|+|||
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~~--------------~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~  222 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWVC--------------CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR  222 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEE--------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEEEEeCCCcEEEEEecCCCEEE--------------EEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence            99999999999999987653211              224568999999999999999999999999999996

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.97  E-value=6.9e-29  Score=273.84  Aligned_cols=273  Identities=14%  Similarity=0.167  Sum_probs=218.9

Q ss_pred             ccCCCCCceEEEEecCCCC------c-ccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeE
Q 004207          475 QHNGASSKSLLMFGSDGMG------S-LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE  547 (768)
Q Consensus       475 ~~s~s~~~~~l~~~~~~~~------~-~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~  547 (768)
                      ...++.+..+.+|......      . .......+...+.++++|+.|+.|++|.....                   ..
T Consensus        71 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------------------~~  131 (420)
T 3vl1_A           71 LYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN-------------------LQ  131 (420)
T ss_dssp             EEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSC-------------------EE
T ss_pred             EEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCc-------------------ce
Confidence            3445556778888765421      1 11122245667889999999999999954321                   33


Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (768)
Q Consensus       548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~  627 (768)
                      ...+.+|.+.|++++|+|++++|++|+.|+.|+|||+.+++.+..+.+|...|++++|+|++++|++++.|++|++||++
T Consensus       132 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~  211 (420)
T 3vl1_A          132 REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG  211 (420)
T ss_dssp             EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC
Confidence            55667999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEeec---CCCCeEEEEE---------------------eCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--
Q 004207          628 NPDYSLRTFTG---HSTTVMSLDF---------------------HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--  681 (768)
Q Consensus       628 t~~~~~~~~~~---h~~~V~slaf---------------------sp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--  681 (768)
                      +++. +..+..   |...|.+++|                     +|++. +|++|+.||.|++||+++++.+..+..  
T Consensus       212 ~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  289 (420)
T 3vl1_A          212 TGTT-IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKEQTIQLPSKF  289 (420)
T ss_dssp             TTEE-EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCCEEEEECCTT
T ss_pred             CCce-eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECCCCceeEEccccc
Confidence            8764 555553   4445555555                     56655 677899999999999999988877753  


Q ss_pred             CCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCceE-eeecc-------------------------eeEEeecCC----
Q 004207          682 QSGATQMRFQPRLG-RILAAAIENYISILDVETQVC-RLKLQ-------------------------TLELWNMTE----  730 (768)
Q Consensus       682 ~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~-~~~~~-------------------------~I~iwd~~~----  730 (768)
                      ...+.+++|+|++. +|++++.|+.|++||+++... ...+.                         .|++|++..    
T Consensus       290 ~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~  369 (420)
T 3vl1_A          290 TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESE  369 (420)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCC
T ss_pred             CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCC
Confidence            46799999999998 999999999999999987532 11111                         899999876    


Q ss_pred             ------CceEEeccCCCCeeEEEEeCCCC---EEEEEECCCcEEEeC
Q 004207          731 ------NKTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK  768 (768)
Q Consensus       731 ------~~~~~l~~H~~~I~sla~spdg~---~LaSgs~DG~V~IWD  768 (768)
                            .....+..|...|.+++|+|++.   .|++++.+|.+.+|+
T Consensus       370 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~  416 (420)
T 3vl1_A          370 RPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN  416 (420)
T ss_dssp             SCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred             ccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence                  23335668899999999999999   788888999999995

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=1.6e-28  Score=261.19  Aligned_cols=222  Identities=27%  Similarity=0.478  Sum_probs=194.5

Q ss_pred             eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (768)
Q Consensus       545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVW  624 (768)
                      +.....+.+|.+.|++++|+|++++|++|+.||.|+||++.+++....+.+|...|.+++|+|++++|++++.|++|+||
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   92 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW   92 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence            44567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcC
Q 004207          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE  703 (768)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~D  703 (768)
                      |+++++. +..+.+|...|.+++|+|++. +|++|+.|+.|++||+++++++..+.. ...|.+++|+|++.++++++.|
T Consensus        93 d~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
T 4ery_A           93 DVSSGKC-LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  170 (312)
T ss_dssp             ETTTCCE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ECCCCcE-EEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            9998775 788889999999999999976 667999999999999999999888875 5679999999999999999999


Q ss_pred             CeEEEEECCCceEeeecc--------------------------eeEEeecCCCceE-EeccCCCCeeE--EEE-eCCCC
Q 004207          704 NYISILDVETQVCRLKLQ--------------------------TLELWNMTENKTL-TLSAHDKLVSS--LAA-STVNG  753 (768)
Q Consensus       704 g~I~IwD~~t~~~~~~~~--------------------------~I~iwd~~~~~~~-~l~~H~~~I~s--la~-spdg~  753 (768)
                      +.|++||+++......+.                          .|++||+.+++.. .+.+|...+.+  ..+ .+++.
T Consensus       171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (312)
T 4ery_A          171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK  250 (312)
T ss_dssp             SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSC
T ss_pred             CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCc
Confidence            999999998865443221                          7899999888765 45677665433  233 36788


Q ss_pred             EEEEEECCCcEEEeC
Q 004207          754 MVASASHDKCVKIWK  768 (768)
Q Consensus       754 ~LaSgs~DG~V~IWD  768 (768)
                      +|++|+.||.|+|||
T Consensus       251 ~l~sg~~dg~i~vwd  265 (312)
T 4ery_A          251 WIVSGSEDNLVYIWN  265 (312)
T ss_dssp             EEEECCTTSCEEEEE
T ss_pred             EEEEECCCCEEEEEE
Confidence            999999999999996

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=2.6e-28  Score=269.94  Aligned_cols=257  Identities=18%  Similarity=0.292  Sum_probs=219.0

Q ss_pred             cCCCCCceEEEEecCCC---------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceee
Q 004207          476 HNGASSKSLLMFGSDGM---------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFT  546 (768)
Q Consensus       476 ~s~s~~~~~l~~~~~~~---------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~  546 (768)
                      ..++.+..+.+|.....         +...+....+.+.+.++++|+.|+.|++|.....                   .
T Consensus       107 ~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-------------------~  167 (401)
T 4aez_A          107 VAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ-------------------T  167 (401)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC-------------------C
T ss_pred             EEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC-------------------e
Confidence            33445677777776543         1233445667778899999999999999965332                   2


Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~-t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      .+..+.+|...|.+++|  ++.+|++|+.||.|++||+. ....+..+.+|...|.+++|+|++.+|++|+.|++|++||
T Consensus       168 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd  245 (401)
T 4aez_A          168 KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD  245 (401)
T ss_dssp             EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEcc
Confidence            45667799999999999  56899999999999999998 5677888899999999999999999999999999999999


Q ss_pred             CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe--CCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE--
Q 004207          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--  701 (768)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs--~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags--  701 (768)
                      ++++.. +..+..|...|.+++|+|++..++++++  .|+.|++||+++++++..+.....+.+++|+|++.++++++  
T Consensus       246 ~~~~~~-~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~  324 (401)
T 4aez_A          246 ARSSIP-KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGF  324 (401)
T ss_dssp             TTCSSE-EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECT
T ss_pred             CCCCCc-cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeec
Confidence            998665 6778889999999999999888998876  79999999999999999999889999999999999999865  


Q ss_pred             cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          702 IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       702 ~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .|+.|++||+.+.....              ...+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus       325 ~dg~i~v~~~~~~~~~~--------------~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~  377 (401)
T 4aez_A          325 PDNNLSIWSYSSSGLTK--------------QVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR  377 (401)
T ss_dssp             TTCEEEEEEEETTEEEE--------------EEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred             CCCcEEEEecCCcccee--------------EEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            79999999988754322              123458999999999999999999999999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.97  E-value=1.2e-28  Score=264.71  Aligned_cols=207  Identities=20%  Similarity=0.356  Sum_probs=179.7

Q ss_pred             ceeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC-----CeEEEEeccCCCCEEEEEEcCCCCEEEEEe
Q 004207          543 FTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSS  616 (768)
Q Consensus       543 ~~~~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl~t-----~~~~~tl~~h~~~V~sl~fspdg~~LaTgs  616 (768)
                      ..+.....+.+|.+.|++++|+|++ ++|++|+.|++|++|++..     +.++..+.+|...|.+++|+|++++|++|+
T Consensus         5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s   84 (319)
T 3frx_A            5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS   84 (319)
T ss_dssp             EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence            3456677899999999999999965 8999999999999999864     345678899999999999999999999999


Q ss_pred             CCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCC-
Q 004207          617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRL-  694 (768)
Q Consensus       617 ~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~-  694 (768)
                      .|++|+|||+++++. +..+.+|...|.+++|+|++. +|++|+.|++|++||++. .++..+. +...+.++.|.|.. 
T Consensus        85 ~D~~v~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~  161 (319)
T 3frx_A           85 WDKTLRLWDVATGET-YQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEK  161 (319)
T ss_dssp             TTSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC--
T ss_pred             CCCEEEEEECCCCCe-eEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCC
Confidence            999999999998765 788899999999999999976 667999999999999985 4555554 45679999999853 


Q ss_pred             -----CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          695 -----GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       695 -----~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                           ..+++++.|+.|++||+++.....                .+.+|...|++++|+|++.+|++++.||.|+|||
T Consensus       162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----------------~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd  224 (319)
T 3frx_A          162 ADDDSVTIISAGNDKMVKAWNLNQFQIEA----------------DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN  224 (319)
T ss_dssp             ----CCEEEEEETTSCEEEEETTTTEEEE----------------EECCCCSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             CCCCccEEEEEeCCCEEEEEECCcchhhe----------------eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence                 479999999999999998765432                3458999999999999999999999999999997

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-28  Score=265.24  Aligned_cols=241  Identities=16%  Similarity=0.215  Sum_probs=198.9

Q ss_pred             ccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC--CCEEEEEeCCC
Q 004207          500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDK  577 (768)
Q Consensus       500 ~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd--g~~LaSgs~Dg  577 (768)
                      ..+.+.+.+|++|+.|+.|++|....                 .....+..+.+|.+.|++++|+++  +.+|++|+.||
T Consensus        17 ~~~s~~~~~l~~~~~dg~i~iw~~~~-----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg   79 (379)
T 3jrp_A           17 AVLDYYGKRLATCSSDKTIKIFEVEG-----------------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   79 (379)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEEEET-----------------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             EEEcCCCCEEEEEECCCcEEEEecCC-----------------CcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence            33445677999999999999995531                 133556778899999999999987  99999999999


Q ss_pred             cEEEEECCCCe--EEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCC-eeEEEeecCCCCeEEEEEeCC-
Q 004207          578 KAVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPS-  651 (768)
Q Consensus       578 ~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVWDl~t~~-~~~~~~~~h~~~V~slafsp~-  651 (768)
                      .|+|||+.+++  .+..+..|...|.+++|+|+  +.+|++++.|++|++||++... .....+..|...|.+++|+|. 
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  159 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  159 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred             EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence            99999999987  77788889999999999999  9999999999999999998764 234567789999999999994 


Q ss_pred             -----------CCeEEEEEeCCCcEEEEECCCCe----eEEEEe-cCCCeeEEEEecC---CCEEEEEEcCCeEEEEECC
Q 004207          652 -----------KEDLLCSCDNNSEIRYWSINNGS----CAGVFK-CQSGATQMRFQPR---LGRILAAAIENYISILDVE  712 (768)
Q Consensus       652 -----------g~~lLaSgs~Dg~I~iWDl~sg~----~i~~~~-~~~~i~sl~fsp~---~~~llags~Dg~I~IwD~~  712 (768)
                                 ...+|++|+.|+.|++||++++.    ++..+. +...|.+++|+|+   +.+|++++.|+.|++||++
T Consensus       160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~  239 (379)
T 3jrp_A          160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  239 (379)
T ss_dssp             ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence                       24477799999999999998764    333444 3567999999999   8899999999999999998


Q ss_pred             CceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          713 TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       713 t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +.......           .......|...|++++|+|++.+|++++.||.|+|||
T Consensus       240 ~~~~~~~~-----------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~  284 (379)
T 3jrp_A          240 NEQGPWKK-----------TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  284 (379)
T ss_dssp             STTSCCEE-----------EESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred             CCCcccee-----------eeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence            75321100           0112235888999999999999999999999999996

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=7.5e-28  Score=254.22  Aligned_cols=242  Identities=19%  Similarity=0.344  Sum_probs=200.5

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~  585 (768)
                      +++|++| .|++|++|+...+.                 ......+.+|...|++++|+|++++|++|+.||+|+|||++
T Consensus        36 ~~~lAvg-~D~tV~iWd~~tg~-----------------~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~   97 (318)
T 4ggc_A           36 GNVLAVA-LDNSVYLWSASSGD-----------------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ   97 (318)
T ss_dssp             TSEEEEE-ETTEEEEEETTTCC-----------------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCEEEEE-eCCEEEEEECCCCC-----------------EEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC
Confidence            3477877 49999999654331                 11233456888999999999999999999999999999999


Q ss_pred             CCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcE
Q 004207          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (768)
Q Consensus       586 t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I  665 (768)
                      +++++..+.+|...+.++.+.  +.+|++++.++.+++|+.......+..+.+|...+.++.|++++. +|++++.|+.|
T Consensus        98 ~~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i  174 (318)
T 4ggc_A           98 QQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLV  174 (318)
T ss_dssp             TTEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred             CceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCcce
Confidence            999999999999988877665  579999999999999999988877889999999999999999977 66699999999


Q ss_pred             EEEECCCCeeE-----EEEecCCCeeEEEEecCCCEEE---EEEcCCeEEEEECCCceEeeec-----------------
Q 004207          666 RYWSINNGSCA-----GVFKCQSGATQMRFQPRLGRIL---AAAIENYISILDVETQVCRLKL-----------------  720 (768)
Q Consensus       666 ~iWDl~sg~~i-----~~~~~~~~i~sl~fsp~~~~ll---ags~Dg~I~IwD~~t~~~~~~~-----------------  720 (768)
                      ++||+++++..     ........|..+.++|.+..++   +++.++.|++||..........                 
T Consensus       175 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  254 (318)
T 4ggc_A          175 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKE  254 (318)
T ss_dssp             EEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTE
T ss_pred             eEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccc
Confidence            99999876532     2222356789999999876554   3346789999999876443222                 


Q ss_pred             ---------ceeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          721 ---------QTLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       721 ---------~~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                               ..|++||+.+++.+ ++.+|.+.|++|+|+|++.+|+|||.||+|+|||
T Consensus       255 ~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd  312 (318)
T 4ggc_A          255 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  312 (318)
T ss_dssp             EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             eEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence                     17999999887765 6789999999999999999999999999999997

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=1.8e-28  Score=268.07  Aligned_cols=246  Identities=13%  Similarity=0.130  Sum_probs=207.6

Q ss_pred             CEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC----C---CEEEEEeCCCcE
Q 004207          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD----G---KLLATGGHDKKA  579 (768)
Q Consensus       507 ~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd----g---~~LaSgs~Dg~I  579 (768)
                      .++++|+.|+.|++|.......             ...+..+..+.+|...|++++|+|+    +   .+|++++.|+.|
T Consensus        27 ~~l~s~~~dg~i~iw~~~~~~~-------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i   93 (397)
T 1sq9_A           27 SFTVSCSGDGYLKVWDNKLLDN-------------ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL   93 (397)
T ss_dssp             SEEEEEETTSEEEEEESBCCTT-------------CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred             CeEEEEcCCCEEEEEECCCccc-------------ccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCE
Confidence            7999999999999997654321             0112345666799999999999999    9   999999999999


Q ss_pred             EEEECCCCeE-----EEEeccC-----CCCEEEEEEc----CCCCE-EEEEeCCCcEEEEECCC------CCeeEE----
Q 004207          580 VLWCTESFTV-----KSTLEEH-----TQWITDVRFS----PSLSR-LATSSADRTVRVWDTEN------PDYSLR----  634 (768)
Q Consensus       580 ~VWdl~t~~~-----~~tl~~h-----~~~V~sl~fs----pdg~~-LaTgs~DgtIrVWDl~t------~~~~~~----  634 (768)
                      ++||+.+++.     +..+..|     ...|.+++|+    |++.+ |++++.||.|++||+++      +.. +.    
T Consensus        94 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~  172 (397)
T 1sq9_A           94 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-LNWSPT  172 (397)
T ss_dssp             EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT-TCCCCE
T ss_pred             EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce-eeccCc
Confidence            9999998876     8888888     5899999999    99999 99999999999999987      443 33    


Q ss_pred             -Ee-------ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-------CCCeeEEEEecCCCEEEE
Q 004207          635 -TF-------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILA  699 (768)
Q Consensus       635 -~~-------~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-------~~~i~sl~fsp~~~~lla  699 (768)
                       .+       ..|...|.+++|+|++  +|++++.|+.|++||+++++++..+..       ...+.+++|+|++.+|++
T Consensus       173 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~  250 (397)
T 1sq9_A          173 LELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI  250 (397)
T ss_dssp             EEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred             ceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence             45       4488999999999997  777999999999999999999998886       678999999999999999


Q ss_pred             EEcC---CeEEEEECCCceEeeec---------------c-----------------------eeEEeecCCCceE-Eec
Q 004207          700 AAIE---NYISILDVETQVCRLKL---------------Q-----------------------TLELWNMTENKTL-TLS  737 (768)
Q Consensus       700 gs~D---g~I~IwD~~t~~~~~~~---------------~-----------------------~I~iwd~~~~~~~-~l~  737 (768)
                      ++.|   +.|++||+++......+               .                       .|++||+..++.+ .+.
T Consensus       251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            9999   99999999876543211               1                       7999999887765 455


Q ss_pred             ------cC---------------CCCeeEEEEeCCC----------CEEEEEECCCcEEEeC
Q 004207          738 ------AH---------------DKLVSSLAASTVN----------GMVASASHDKCVKIWK  768 (768)
Q Consensus       738 ------~H---------------~~~I~sla~spdg----------~~LaSgs~DG~V~IWD  768 (768)
                            .|               ...|++++|+|++          .+|++++.||.|+|||
T Consensus       331 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          331 MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             CCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             cccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence                  67               8999999999998          7999999999999996

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=7.1e-29  Score=266.09  Aligned_cols=251  Identities=17%  Similarity=0.295  Sum_probs=203.2

Q ss_pred             CccccCCC-CEEEeecC---CCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC---CCEEE
Q 004207          499 PNQLTDMD-RFVDDGSL---DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD---GKLLA  571 (768)
Q Consensus       499 ~~~l~~~~-~~latGS~---D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd---g~~La  571 (768)
                      ...+.+.+ .++++|+.   |+.|++|......                 .. .....+|...|++++|+|+   +.+|+
T Consensus        23 ~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~-----------------~~-~~~~~~~~~~v~~~~~~~~~~~~~~l~   84 (357)
T 3i2n_A           23 DCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD-----------------LK-LLREIEKAKPIKCGTFGATSLQQRYLA   84 (357)
T ss_dssp             EEEECTTSSEEEEEEC--CCCEEEEEEEECSSS-----------------EE-EEEEEEESSCEEEEECTTCCTTTCCEE
T ss_pred             EEEEcCCCceEEEecCccCCCcEEEEEeCCCCc-----------------cc-ceeeecccCcEEEEEEcCCCCCCceEE
Confidence            33334433 57788887   9999999654321                 11 1122378899999999998   69999


Q ss_pred             EEeCCCcEEEEECCCCe-EEEEeccCCCCEEEEEE------cCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCC---
Q 004207          572 TGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRF------SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST---  641 (768)
Q Consensus       572 Sgs~Dg~I~VWdl~t~~-~~~tl~~h~~~V~sl~f------spdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~---  641 (768)
                      +|+.||.|++||+.+++ .+..+.+|...|.+++|      +|++++|++++.|++|++||++++...+..+..|.+   
T Consensus        85 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  164 (357)
T 3i2n_A           85 TGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENK  164 (357)
T ss_dssp             EEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCC
T ss_pred             EecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCC
Confidence            99999999999999888 88899999999999955      678999999999999999999987755677766554   


Q ss_pred             -CeEEEE----EeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEec---CCCEEEEEEcCCeEEEEECCC
Q 004207          642 -TVMSLD----FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVET  713 (768)
Q Consensus       642 -~V~sla----fsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp---~~~~llags~Dg~I~IwD~~t  713 (768)
                       .|.+++    |++++. +|++++.|+.|++||++++++.....+...+.+++|+|   ++.++++++.|+.|++||+++
T Consensus       165 ~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  243 (357)
T 3i2n_A          165 RDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT  243 (357)
T ss_dssp             CCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred             CceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence             899998    567765 67789999999999999999888877888999999999   899999999999999999876


Q ss_pred             ceEeeec-------------------------------ceeEEeecCCC--------------------ceEEeccCCCC
Q 004207          714 QVCRLKL-------------------------------QTLELWNMTEN--------------------KTLTLSAHDKL  742 (768)
Q Consensus       714 ~~~~~~~-------------------------------~~I~iwd~~~~--------------------~~~~l~~H~~~  742 (768)
                      ......+                               ..|++||+..+                    .+..+..|...
T Consensus       244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  323 (357)
T 3i2n_A          244 QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP  323 (357)
T ss_dssp             EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSC
T ss_pred             CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCC
Confidence            4321110                               17889998753                    23467789999


Q ss_pred             eeEEEEeCCCCEEE-EEECCCcEEEeC
Q 004207          743 VSSLAASTVNGMVA-SASHDKCVKIWK  768 (768)
Q Consensus       743 I~sla~spdg~~La-Sgs~DG~V~IWD  768 (768)
                      |++++|+|++.+|+ +++.||.|+|||
T Consensus       324 v~~~~~s~~~~~l~~s~~~d~~i~iw~  350 (357)
T 3i2n_A          324 ISSLDWSPDKRGLCVCSSFDQTVRVLI  350 (357)
T ss_dssp             EEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             eeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence            99999999999888 899999999996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=1.7e-28  Score=263.64  Aligned_cols=243  Identities=19%  Similarity=0.294  Sum_probs=198.4

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEE--ecCCCCCeEEEEEcCC----CCEEEEEeCCCcE
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL--IPASTSKVESCHFSPD----GKLLATGGHDKKA  579 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--l~~H~~~I~sl~fSpd----g~~LaSgs~Dg~I  579 (768)
                      +..+++++.++.|++|.....                .....+..  ...|...|++++|+|+    +.+|++|+.||.|
T Consensus        34 ~~~~~~~~~~~~v~vw~~~~~----------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i   97 (366)
T 3k26_A           34 DPLVFATVGSNRVTLYECHSQ----------------GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGII   97 (366)
T ss_dssp             SCEEEEEEETTEEEEEEECGG----------------GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEE
T ss_pred             CceEEEECCCCEEEEEEcCCC----------------cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEE
Confidence            455666666779999965432                11122222  2348889999999998    6799999999999


Q ss_pred             EEEECCCCeEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCeeEEEe---ecCCCCeEEEEEeCCCCeE
Q 004207          580 VLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKEDL  655 (768)
Q Consensus       580 ~VWdl~t~~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~~~~~~~~---~~h~~~V~slafsp~g~~l  655 (768)
                      +|||+.+++.+..+.+|...|.+++|+| ++.+|++++.||+|++||+++++. +..+   .+|...|.+++|+|++. +
T Consensus        98 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~  175 (366)
T 3k26_A           98 RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL-VAIFGGVEGHRDEVLSADYDLLGE-K  175 (366)
T ss_dssp             EEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-EEEECSTTSCSSCEEEEEECTTSS-E
T ss_pred             EEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-EEEecccccccCceeEEEECCCCC-E
Confidence            9999999999999999999999999999 899999999999999999998764 5565   68999999999999977 5


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEe-----------------------------cCCCeeEEEEecCCCEEEEEEcCCeE
Q 004207          656 LCSCDNNSEIRYWSINNGSCAGVFK-----------------------------CQSGATQMRFQPRLGRILAAAIENYI  706 (768)
Q Consensus       656 LaSgs~Dg~I~iWDl~sg~~i~~~~-----------------------------~~~~i~sl~fsp~~~~llags~Dg~I  706 (768)
                      |++++.|+.|++||+++++.+..+.                             +...|.+++|+  +.++++++.|+.|
T Consensus       176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i  253 (366)
T 3k26_A          176 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAI  253 (366)
T ss_dssp             EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEE
T ss_pred             EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEE
Confidence            6688899999999999876543332                             45679999999  5799999999999


Q ss_pred             EEEECCCceE--------------ee---------------------------ecceeEEeecCCCce-----EEeccC-
Q 004207          707 SILDVETQVC--------------RL---------------------------KLQTLELWNMTENKT-----LTLSAH-  739 (768)
Q Consensus       707 ~IwD~~t~~~--------------~~---------------------------~~~~I~iwd~~~~~~-----~~l~~H-  739 (768)
                      ++||+.+...              ..                           ....|++||+..+..     ..+..| 
T Consensus       254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  333 (366)
T 3k26_A          254 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK  333 (366)
T ss_dssp             EEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT
T ss_pred             EEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc
Confidence            9999876422              10                           012799999988643     256667 


Q ss_pred             -CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          740 -DKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       740 -~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                       ...|++++|+|++.+|++++.||.|+|||
T Consensus       334 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  363 (366)
T 3k26_A          334 CGAAIRQTSFSRDSSILIAVCDDASIWRWD  363 (366)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence             78999999999999999999999999997

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=4.5e-29  Score=274.78  Aligned_cols=242  Identities=19%  Similarity=0.345  Sum_probs=198.1

Q ss_pred             cCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 004207          498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK  577 (768)
Q Consensus       498 ~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg  577 (768)
                      ....+.+.+.+|++|+.|++|++|+....                   .....+..|...|.+++|+|++++|++|+.|+
T Consensus        70 ~~~~~sp~~~~l~s~s~D~~v~iWd~~~~-------------------~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~  130 (380)
T 3iz6_a           70 YSLDWTPEKNWIVSASQDGRLIVWNALTS-------------------QKTHAIKLHCPWVMECAFAPNGQSVACGGLDS  130 (380)
T ss_dssp             EEEEECTTSSCEEEEETTSEEEEEETTTT-------------------EEEEEEECCCTTCCCCEECTTSSEEEECCSSS
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------ccceEEecCCCCEEEEEECCCCCEEEEeeCCC
Confidence            33344556789999999999999965322                   34566789999999999999999999999999


Q ss_pred             cEEEEECCCCe-------EEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEe-----ecCCCCeE
Q 004207          578 KAVLWCTESFT-------VKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVM  644 (768)
Q Consensus       578 ~I~VWdl~t~~-------~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~-----~~h~~~V~  644 (768)
                      .|+|||+.+..       ....+.+|.+.|.++.|+|+ +..|++|+.|++|++||++++.. +..+     .+|...|.
T Consensus       131 ~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~  209 (380)
T 3iz6_a          131 ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVL  209 (380)
T ss_dssp             CCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE-EEEECCCSSSSCCSCEE
T ss_pred             cEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE-EEEeecccCCCCccCeE
Confidence            99999986532       34567899999999999996 56799999999999999998775 4444     67899999


Q ss_pred             EEEEeCCCCeEEEEEeCCCcEEEEECC-CCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecce
Q 004207          645 SLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQT  722 (768)
Q Consensus       645 slafsp~g~~lLaSgs~Dg~I~iWDl~-sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~  722 (768)
                      +++|++....+|++|+.|+.|++||++ .+.++..+.. ...|.+++|+|++.+|++++.|++|++||++++.....   
T Consensus       210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~---  286 (380)
T 3iz6_a          210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV---  286 (380)
T ss_dssp             EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEE---
T ss_pred             EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE---
Confidence            999998656688899999999999998 4567777764 56799999999999999999999999999998766432   


Q ss_pred             eEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          723 LELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       723 I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                         +.....   ....+...|++++|+|++.+|++|+.||.|+|||
T Consensus       287 ---~~~~~~---~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd  326 (380)
T 3iz6_a          287 ---YNREPD---RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD  326 (380)
T ss_dssp             ---ECCCCS---SSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             ---eccccc---ccccccCceEEEEECCCCCEEEEEECCCCEEEEE
Confidence               221111   0112345689999999999999999999999997

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.1e-28  Score=263.39  Aligned_cols=254  Identities=12%  Similarity=0.231  Sum_probs=206.2

Q ss_pred             CccccCCCC-EEEeecCCCcEEEeec----CCCCCCCCccccccccCCCceeeEEEE----------ecCCCCCeEEEEE
Q 004207          499 PNQLTDMDR-FVDDGSLDDNVESFLS----PDDADPRDRVGRSAEVGKGFTFTEFQL----------IPASTSKVESCHF  563 (768)
Q Consensus       499 ~~~l~~~~~-~latGS~D~~v~~w~~----~~~~d~~~~~~~~~~~~~~~~~~~~~~----------l~~H~~~I~sl~f  563 (768)
                      ...+.+.+. ++++|+.|+.|++|..    ......             ..+.....          ..+|.+.|++++|
T Consensus        50 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (425)
T 1r5m_A           50 SSTWNPLDESILAYGEKNSVARLARIVETDQEGKKY-------------WKLTIIAELRHPFALSASSGKTTNQVTCLAW  116 (425)
T ss_dssp             EEEECSSCTTEEEEEETBTEEEEEEEEEC------C-------------EEEEEEEEEECCCCCC------CBCEEEEEE
T ss_pred             EEEECCCCCcEEEEecCCceEEEEEEecccCCcccc-------------ccccccccccccccccccccCCCCceEEEEE
Confidence            344455566 9999999999999976    322100             00111111          2237889999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee-----------
Q 004207          564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-----------  632 (768)
Q Consensus       564 Spdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~-----------  632 (768)
                      +|++++|++++.||.|+||| .+++.+..+..|...|.+++|+|++++|++++.|+.|++||++++...           
T Consensus       117 s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  195 (425)
T 1r5m_A          117 SHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS  195 (425)
T ss_dssp             CTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred             cCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence            99999999999999999999 677888899999999999999999999999999999999999765421           


Q ss_pred             --------------------------------------------EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 004207          633 --------------------------------------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW  668 (768)
Q Consensus       633 --------------------------------------------~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iW  668 (768)
                                                                  +..+..|...|.+++|+|++. +|++++.|+.|++|
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~  274 (425)
T 1r5m_A          196 SINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIW  274 (425)
T ss_dssp             ----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEE
T ss_pred             ceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC-EEEEEcCCCEEEEE
Confidence                                                        123446888999999999987 66688899999999


Q ss_pred             ECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-------------------------e
Q 004207          669 SINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-------------------------T  722 (768)
Q Consensus       669 Dl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-------------------------~  722 (768)
                      |+++++++..+. +...+.+++|+|++ .+++++.|+.|++||+++......+.                         .
T Consensus       275 d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  353 (425)
T 1r5m_A          275 HGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ  353 (425)
T ss_dssp             CSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred             ECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence            999998888886 46779999999998 99999999999999998876554332                         7


Q ss_pred             eEEeecCCCc---------------------eEEeccCCC--CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          723 LELWNMTENK---------------------TLTLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       723 I~iwd~~~~~---------------------~~~l~~H~~--~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |++||+..+.                     ...+..|..  .|++++|+|++.+|++++.||.|+|||
T Consensus       354 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  422 (425)
T 1r5m_A          354 VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA  422 (425)
T ss_dssp             EEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred             EEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence            9999998776                     346778866  999999999999999999999999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.96  E-value=4.1e-28  Score=268.35  Aligned_cols=213  Identities=30%  Similarity=0.529  Sum_probs=185.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC------------------CEEEEEEcCCCCEEEE
Q 004207          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------------------WITDVRFSPSLSRLAT  614 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~------------------~V~sl~fspdg~~LaT  614 (768)
                      +|.+.|.|++|+|||++||+|+ |+.++||++.+++.+..+..|..                  .|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999986 68999999999998888765532                  4999999999999999


Q ss_pred             EeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEec-C
Q 004207          615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP-R  693 (768)
Q Consensus       615 gs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp-~  693 (768)
                      |+.|++|+|||+++++. +..+.+|...|.+++|+|++. +|++|+.|++|++||++++++...+.....+.+++|+| +
T Consensus       141 ~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  218 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD  218 (393)
T ss_dssp             EETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred             EcCCCeEEEEECCCCcE-EEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence            99999999999998664 778899999999999999987 56699999999999999999999998888999999999 8


Q ss_pred             CCEEEEEEcCCeEEEEECCCceEeeec--------------------------------ceeEEeecCCCc---------
Q 004207          694 LGRILAAAIENYISILDVETQVCRLKL--------------------------------QTLELWNMTENK---------  732 (768)
Q Consensus       694 ~~~llags~Dg~I~IwD~~t~~~~~~~--------------------------------~~I~iwd~~~~~---------  732 (768)
                      +.++++++.|+.|++||++++.....+                                ..|++||+....         
T Consensus       219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  298 (393)
T 1erj_A          219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN  298 (393)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence            889999999999999999876443221                                179999986532         


Q ss_pred             ----eEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          733 ----TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       733 ----~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                          ...+.+|...|.+++|++++.+|++|+.||.|+|||
T Consensus       299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd  338 (393)
T 1erj_A          299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD  338 (393)
T ss_dssp             --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred             CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence                235678999999999999999999999999999997

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.96  E-value=5e-28  Score=256.92  Aligned_cols=216  Identities=17%  Similarity=0.303  Sum_probs=190.2

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEec--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       551 l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~---~~tl~--~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      ..+|...|++++|+|++++|++++ ||.|+|||+.+++.   +..+.  .|...|.+++|+|++++|++++.|+.|++||
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d  125 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence            348999999999999999999998 99999999987643   23333  7899999999999999999999999999999


Q ss_pred             CCCCCe-eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcC
Q 004207          626 TENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE  703 (768)
Q Consensus       626 l~t~~~-~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~D  703 (768)
                      +++++. ....+..|...|.+++|+|++. ++++++.|+.|++||+++++.+..+.. ...+.+++|+|++.++++++.|
T Consensus       126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  204 (337)
T 1gxr_A          126 LAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCCcceeeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence            998763 3567788999999999999876 566888999999999999999888874 6679999999999999999999


Q ss_pred             CeEEEEECCCceEeeecc------------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE
Q 004207          704 NYISILDVETQVCRLKLQ------------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS  759 (768)
Q Consensus       704 g~I~IwD~~t~~~~~~~~------------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs  759 (768)
                      +.|++||+++......+.                        .+++||+..++...+..|...|.+++|+|++.+|++++
T Consensus       205 g~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (337)
T 1gxr_A          205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG  284 (337)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEec
Confidence            999999998876544322                        78999999999888999999999999999999999999


Q ss_pred             CCCcEEEeC
Q 004207          760 HDKCVKIWK  768 (768)
Q Consensus       760 ~DG~V~IWD  768 (768)
                      .||.|++||
T Consensus       285 ~dg~i~~~~  293 (337)
T 1gxr_A          285 KDNLLNAWR  293 (337)
T ss_dssp             TTSEEEEEE
T ss_pred             CCCcEEEEE
Confidence            999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.96  E-value=1.7e-27  Score=274.08  Aligned_cols=268  Identities=26%  Similarity=0.422  Sum_probs=219.3

Q ss_pred             cCCCCCceEEEEecCCC-------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEE
Q 004207          476 HNGASSKSLLMFGSDGM-------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEF  548 (768)
Q Consensus       476 ~s~s~~~~~l~~~~~~~-------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~  548 (768)
                      ..++.+..+.+|...+.       +...+....+.+.+..+++++.|+.|++|....                    ..+
T Consensus       237 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--------------------~~~  296 (577)
T 2ymu_A          237 ASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG--------------------QLL  296 (577)
T ss_dssp             EEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--------------------CEE
T ss_pred             EEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--------------------cEE
Confidence            33445566666665432       223334556677888999999999999995311                    134


Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t  628 (768)
                      ..+.+|...|.+++|+|++.+|++++.|+.|++||+.. ..+..+.+|...|.+++|+|++++|++++.|++|++||.. 
T Consensus       297 ~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-  374 (577)
T 2ymu_A          297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-  374 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-
T ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-
Confidence            56789999999999999999999999999999999865 5566788999999999999999999999999999999965 


Q ss_pred             CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEE
Q 004207          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYIS  707 (768)
Q Consensus       629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~  707 (768)
                      ++ .+..+.+|...|.+++|+|++. +|++++.|+.|++||.. ++.+..+.. ...|.+++|+|++.+|++++.|+.|+
T Consensus       375 ~~-~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~  451 (577)
T 2ymu_A          375 GQ-LLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK  451 (577)
T ss_dssp             CC-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             CC-EEEEecCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence            33 4778889999999999999987 55688899999999964 666666654 56799999999999999999999999


Q ss_pred             EEECCCceEeee------------------------cceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 004207          708 ILDVETQVCRLK------------------------LQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC  763 (768)
Q Consensus       708 IwD~~t~~~~~~------------------------~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~  763 (768)
                      +||.........                        ...|++||........+.+|...|++|+|+|++++|++++.||.
T Consensus       452 ~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~  531 (577)
T 2ymu_A          452 LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT  531 (577)
T ss_dssp             EEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred             EEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCE
Confidence            999754322110                        01799999876666788899999999999999999999999999


Q ss_pred             EEEeC
Q 004207          764 VKIWK  768 (768)
Q Consensus       764 V~IWD  768 (768)
                      |+|||
T Consensus       532 v~lwd  536 (577)
T 2ymu_A          532 VKLWN  536 (577)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99997

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=2.5e-29  Score=273.61  Aligned_cols=241  Identities=15%  Similarity=0.170  Sum_probs=190.5

Q ss_pred             ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 004207          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD  576 (768)
Q Consensus       497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D  576 (768)
                      +....+.+.+.+|++|+.|+.|++|.....                 .+..+..+.+|...|++++|+|++++|++++.|
T Consensus        14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~-----------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d   76 (377)
T 3dwl_C           14 SYEHAFNSQRTEFVTTTATNQVELYEQDGN-----------------GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD   76 (377)
T ss_dssp             CSCCEECSSSSEEECCCSSSCBCEEEEETT-----------------EEEECCCBCCCSSCEEEEEECTTTCCEEEEETT
T ss_pred             EEEEEECCCCCEEEEecCCCEEEEEEccCC-----------------ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC
Confidence            445556667889999999999999965321                 123456677999999999999999999999999


Q ss_pred             CcEEEEECCCCe---EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe--eEEEeec-CCCCeEEEEEeC
Q 004207          577 KKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTG-HSTTVMSLDFHP  650 (768)
Q Consensus       577 g~I~VWdl~t~~---~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~--~~~~~~~-h~~~V~slafsp  650 (768)
                      ++|+|||+.+++   ....+..|...|++++|+|++++|++++.|++|++||++++..  ....+.. |...|.+++|+|
T Consensus        77 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~  156 (377)
T 3dwl_C           77 RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP  156 (377)
T ss_dssp             SSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred             CeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence            999999999877   6777888999999999999999999999999999999988653  3566666 999999999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECC------------------CCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004207          651 SKEDLLCSCDNNSEIRYWSIN------------------NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE  712 (768)
Q Consensus       651 ~g~~lLaSgs~Dg~I~iWDl~------------------sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~  712 (768)
                      ++. +|++++.|+.|++||++                  .++++..+.+...|.+++|+|++.+|++++.|+.|++||+.
T Consensus       157 ~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~  235 (377)
T 3dwl_C          157 NNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS  235 (377)
T ss_dssp             TSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred             CCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            976 67789999999999985                  34455555556779999999999999999999999999998


Q ss_pred             CceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          713 TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       713 t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      +......            ....+..|...|.+++|+|++.+|++++.|+.+.+|
T Consensus       236 ~~~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~  278 (377)
T 3dwl_C          236 APEQPPR------------ALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQ  278 (377)
T ss_dssp             STTSCEE------------ECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEEC
T ss_pred             CCCCcce------------eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEE
Confidence            7654110            012455899999999999999999999877776443

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.5e-29  Score=289.97  Aligned_cols=234  Identities=11%  Similarity=0.115  Sum_probs=184.2

Q ss_pred             cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC------CCEEEEEeCC
Q 004207          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD------GKLLATGGHD  576 (768)
Q Consensus       503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd------g~~LaSgs~D  576 (768)
                      .+...++++++.|++|++|......               ........+..|.+.|.+|+|+|+      +.+||+++.|
T Consensus       170 ~~~~~~laS~s~D~tI~iWd~~~~~---------------~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~D  234 (524)
T 2j04_B          170 NEHLEMFDKEKHSSCIQIFKMNTST---------------LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQE  234 (524)
T ss_dssp             ------------CEEEEEEEEETTT---------------CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETT
T ss_pred             chhhhhhccCCCCceEEEEEccCCC---------------CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecC
Confidence            3455678999999999999653221               111223446678899999999996      5799999999


Q ss_pred             CcEEEEECCCCeE-----------EEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEE
Q 004207          577 KKAVLWCTESFTV-----------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  645 (768)
Q Consensus       577 g~I~VWdl~t~~~-----------~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~s  645 (768)
                      |+|+|||+.+++.           ..++.+|...|++++|+++ ..|++|+.||+|++||++++......+.+|...|.+
T Consensus       235 gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~s  313 (524)
T 2j04_B          235 GTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILS  313 (524)
T ss_dssp             SCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEE
T ss_pred             CeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEE
Confidence            9999999986532           2467889999999999986 489999999999999999876556778899999999


Q ss_pred             E--EEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC---CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeec
Q 004207          646 L--DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL  720 (768)
Q Consensus       646 l--afsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~---~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~  720 (768)
                      |  +|++++..+|++|+.|++|+|||+++++++..+..+   ..|.+++|+|++..+++++.|++|++||+++..+.   
T Consensus       314 v~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~---  390 (524)
T 2j04_B          314 VSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV---  390 (524)
T ss_dssp             EEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC---
T ss_pred             EEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc---
Confidence            9  467776468899999999999999998877666543   24789999999999999999999999998875442   


Q ss_pred             ceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          721 QTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       721 ~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                   .++.+|.+.|++|+|+|++.+|++|+.||+|+|||
T Consensus       391 -------------~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd  425 (524)
T 2j04_B          391 -------------HPLVSRETTITAIGVSRLHPMVLAGSADGSLIITN  425 (524)
T ss_dssp             -------------EEEEECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred             -------------eeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence                         23457999999999999999999999999999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.96  E-value=2.7e-28  Score=259.13  Aligned_cols=208  Identities=20%  Similarity=0.292  Sum_probs=174.3

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeEEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEE
Q 004207          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVW  624 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t--~~~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVW  624 (768)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+  .+++.++.+|.+.|++|+|+++  +++|++|+.|++|+||
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            45679999999999999999999999999999999974  4677899999999999999864  8999999999999999


Q ss_pred             ECCCCC-eeEEEeecCCCCeEEEEEeCCC-CeEEEEEeCCCcEEEEECCCCee--EEEEe-cCCCeeEEEEecC------
Q 004207          625 DTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSC--AGVFK-CQSGATQMRFQPR------  693 (768)
Q Consensus       625 Dl~t~~-~~~~~~~~h~~~V~slafsp~g-~~lLaSgs~Dg~I~iWDl~sg~~--i~~~~-~~~~i~sl~fsp~------  693 (768)
                      |++++. ..+..+.+|...|.+++|+|+. ..+|++++.|+.|++||++++..  ...+. +...|.+++|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998764 2356778899999999999972 34777999999999999987632  23333 4567999999997      


Q ss_pred             -------CCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC---CEEEEEECCCc
Q 004207          694 -------LGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN---GMVASASHDKC  763 (768)
Q Consensus       694 -------~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg---~~LaSgs~DG~  763 (768)
                             +.+|++++.|+.|++||+++......            ....+.+|...|.+|+|+|++   .+|++++.|++
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~------------~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~  230 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV------------LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT  230 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEE------------EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEE------------EEEEecCCCCceEEEEECCCCCCceEEEEEECCCc
Confidence                   46899999999999999876431110            022466899999999999985   79999999999


Q ss_pred             EEEeC
Q 004207          764 VKIWK  768 (768)
Q Consensus       764 V~IWD  768 (768)
                      |+|||
T Consensus       231 v~iWd  235 (297)
T 2pm7_B          231 CIIWT  235 (297)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.96  E-value=7.8e-28  Score=260.66  Aligned_cols=205  Identities=22%  Similarity=0.382  Sum_probs=176.5

Q ss_pred             eeeEEEEecCCCCCeEEEEE-----cC-CCCEEEEEeCCCcEEEEECCC-------CeEEEEeccCCCCEEEEEEcCCCC
Q 004207          544 TFTEFQLIPASTSKVESCHF-----SP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLS  610 (768)
Q Consensus       544 ~~~~~~~l~~H~~~I~sl~f-----Sp-dg~~LaSgs~Dg~I~VWdl~t-------~~~~~tl~~h~~~V~sl~fspdg~  610 (768)
                      .+.....+.+|.+.|++++|     ++ ++.+|++|+.|++|+|||+.+       +.+...+.+|...|.+++|+|++.
T Consensus        10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~   89 (343)
T 2xzm_R           10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC   89 (343)
T ss_dssp             EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred             EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence            34567788999999999999     77 999999999999999999874       345678899999999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----cCCCee
Q 004207          611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGAT  686 (768)
Q Consensus       611 ~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~----~~~~i~  686 (768)
                      +|++|+.|++|+|||+++++. +..+.+|...|.+++|+|++. +|++++.|++|++||+... +.....    +...+.
T Consensus        90 ~l~s~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~  166 (343)
T 2xzm_R           90 FAISSSWDKTLRLWDLRTGTT-YKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVS  166 (343)
T ss_dssp             EEEEEETTSEEEEEETTSSCE-EEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEE
T ss_pred             EEEEEcCCCcEEEEECCCCcE-EEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCC-ceeeeecccCCCceee
Confidence            999999999999999998775 788899999999999999987 5668999999999999843 333332    345699


Q ss_pred             EEEEecCC----------CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEE
Q 004207          687 QMRFQPRL----------GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA  756 (768)
Q Consensus       687 sl~fsp~~----------~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~La  756 (768)
                      +++|+|++          .++++++.|+.|++||... ..                ...+.+|...|++++|+|++.+|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~----------------~~~~~~h~~~v~~~~~s~~g~~l~  229 (343)
T 2xzm_R          167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QI----------------RYTFKAHESNVNHLSISPNGKYIA  229 (343)
T ss_dssp             EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EE----------------EEEEECCSSCEEEEEECTTSSEEE
T ss_pred             eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ce----------------eEEEcCccccceEEEECCCCCEEE
Confidence            99999986          6899999999999999432 21                224558999999999999999999


Q ss_pred             EEECCCcEEEeC
Q 004207          757 SASHDKCVKIWK  768 (768)
Q Consensus       757 Sgs~DG~V~IWD  768 (768)
                      +|+.||.|+|||
T Consensus       230 sgs~dg~v~iwd  241 (343)
T 2xzm_R          230 TGGKDKKLLIWD  241 (343)
T ss_dssp             EEETTCEEEEEE
T ss_pred             EEcCCCeEEEEE
Confidence            999999999997

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.96  E-value=5e-27  Score=263.37  Aligned_cols=239  Identities=17%  Similarity=0.306  Sum_probs=207.9

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~  585 (768)
                      +.++++|+.|++|++|+....                   ..+..+.+|.+.|++++|++++ +|++|+.||+|+|||++
T Consensus       132 ~~~l~sgs~dg~i~vwd~~~~-------------------~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~  191 (464)
T 3v7d_B          132 DNYVITGADDKMIRVYDSINK-------------------KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK  191 (464)
T ss_dssp             TTEEEEEETTSCEEEEETTTT-------------------EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred             CCEEEEEcCCCcEEEEECCCC-------------------cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence            468999999999999965332                   3466778999999999999988 99999999999999999


Q ss_pred             CCeEEEEeccCCCCEEEEEEc--CCCCEEEEEeCCCcEEEEECCCCCee----------------------EEEeecCCC
Q 004207          586 SFTVKSTLEEHTQWITDVRFS--PSLSRLATSSADRTVRVWDTENPDYS----------------------LRTFTGHST  641 (768)
Q Consensus       586 t~~~~~tl~~h~~~V~sl~fs--pdg~~LaTgs~DgtIrVWDl~t~~~~----------------------~~~~~~h~~  641 (768)
                      +++.+..+.+|...|.+++|+  +++.+|++|+.|++|++||++++...                      +..+.+|..
T Consensus       192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (464)
T 3v7d_B          192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA  271 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS
T ss_pred             CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc
Confidence            999999999999999999998  57789999999999999999876432                      557788999


Q ss_pred             CeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeec
Q 004207          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL  720 (768)
Q Consensus       642 ~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~  720 (768)
                      .|.++..+  +. ++++++.|+.|++||+++++++..+.. ...|.+++|+|++.++++++.|+.|++||++++.+...+
T Consensus       272 ~v~~~~~~--~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  348 (464)
T 3v7d_B          272 SVRTVSGH--GN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  348 (464)
T ss_dssp             CEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             eEEEEcCC--CC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            99888544  44 677999999999999999999988874 567999999999999999999999999999988766554


Q ss_pred             c-----------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          721 Q-----------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       721 ~-----------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .                       .|++||+.+........|...+..++|++++.+|++++ ||.|+|||
T Consensus       349 ~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd  418 (464)
T 3v7d_B          349 QGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN  418 (464)
T ss_dssp             CCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred             eCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence            3                       89999998877666556778888999999999999988 89999996

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.96  E-value=2.6e-28  Score=269.28  Aligned_cols=233  Identities=16%  Similarity=0.220  Sum_probs=194.7

Q ss_pred             CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK  578 (768)
Q Consensus       499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~  578 (768)
                      ...+.+.+.++++|+.|+.|++|.......                   ...+..| ..+.+..|++++++|++|+.||.
T Consensus        61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~-------------------~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~  120 (420)
T 3vl1_A           61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDG-------------------SKMLKRA-DYTAVDTAKLQMRRFILGTTEGD  120 (420)
T ss_dssp             TCEEEEEETTEEEEEETTEEEEEECCSEET-------------------TTTSCSC-CEEEEEEECSSSCEEEEEETTSC
T ss_pred             ceeeeecCCeEEEEEcCCcEEEEEecccce-------------------eeEEecC-CceEEEEEecCCCEEEEEECCCC
Confidence            455667788899999999999996543211                   0112233 33555678999999999999999


Q ss_pred             EEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207          579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (768)
Q Consensus       579 I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS  658 (768)
                      |+|||+.+++....+.+|...|++++|+|++++|++++.|++|++||+++++. +..+.+|...|.+++|+|++. +|++
T Consensus       121 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~s  198 (420)
T 3vl1_A          121 IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVTDIAIIDRGR-NVLS  198 (420)
T ss_dssp             EEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-CEEEECCSSCEEEEEEETTTT-EEEE
T ss_pred             EEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-ceEEcCCCCcEEEEEEcCCCC-EEEE
Confidence            99999999999988889999999999999999999999999999999998775 678889999999999999977 5669


Q ss_pred             EeCCCcEEEEECCCCeeEEEEec----C---------------------CCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207          659 CDNNSEIRYWSINNGSCAGVFKC----Q---------------------SGATQMRFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       659 gs~Dg~I~iWDl~sg~~i~~~~~----~---------------------~~i~sl~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                      ++.|+.|++||+++++++..+..    .                     ..+.+++|+|++.++++++.|+.|++||+++
T Consensus       199 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~  278 (420)
T 3vl1_A          199 ASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS  278 (420)
T ss_dssp             EETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTT
T ss_pred             EcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCC
Confidence            99999999999999999988864    2                     2334455578888999999999999999988


Q ss_pred             ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 004207          714 QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK  768 (768)
Q Consensus       714 ~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs~DG~V~IWD  768 (768)
                      ......               ....|...|++++|+|++. +|++|+.||.|+|||
T Consensus       279 ~~~~~~---------------~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd  319 (420)
T 3vl1_A          279 KEQTIQ---------------LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWD  319 (420)
T ss_dssp             CCEEEE---------------ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             CceeEE---------------cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEE
Confidence            654322               1236888999999999998 999999999999997

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.5e-28  Score=268.23  Aligned_cols=239  Identities=12%  Similarity=0.248  Sum_probs=201.5

Q ss_pred             cCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCC
Q 004207          498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHD  576 (768)
Q Consensus       498 ~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd-g~~LaSgs~D  576 (768)
                      ....+.+.+.+|++|+.|+.|++|.......               ....+..+.+|...|++++|+|+ +.+|++++.|
T Consensus        71 ~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~---------------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  135 (416)
T 2pm9_A           71 NDLDWSHNNKIIAGALDNGSLELYSTNEANN---------------AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNN  135 (416)
T ss_dssp             EEEEECSSSSCEEEEESSSCEEEECCSSTTS---------------CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSS
T ss_pred             EEEEECCCCCeEEEEccCCeEEEeecccccc---------------cccchhhccCCccceEEEEEcCCCCCEEEEEcCC
Confidence            3455567788999999999999996543211               11256677899999999999998 8999999999


Q ss_pred             CcEEEEECCCCe------EEE---EeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEeecC------C
Q 004207          577 KKAVLWCTESFT------VKS---TLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGH------S  640 (768)
Q Consensus       577 g~I~VWdl~t~~------~~~---tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h------~  640 (768)
                      +.|+|||+.+++      ...   .+..|...|.+++|+|+ +.+|++++.|+.|++||+++++. +..+..|      .
T Consensus       136 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~  214 (416)
T 2pm9_A          136 GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE-VIHLSYTSPNSGIK  214 (416)
T ss_dssp             SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE-EEEECCCCCSSCCC
T ss_pred             CeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc-ceEEeccccccccC
Confidence            999999999876      332   23678999999999998 78999999999999999998765 5666555      7


Q ss_pred             CCeEEEEEeCCCCeEEEEEeCCC---cEEEEECCCC-eeEEEEe--cCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCC
Q 004207          641 TTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNG-SCAGVFK--CQSGATQMRFQP-RLGRILAAAIENYISILDVET  713 (768)
Q Consensus       641 ~~V~slafsp~g~~lLaSgs~Dg---~I~iWDl~sg-~~i~~~~--~~~~i~sl~fsp-~~~~llags~Dg~I~IwD~~t  713 (768)
                      ..|.+++|+|++..+|++++.|+   .|++||++++ .++..+.  +...|.+++|+| ++.+|++++.|+.|++||+++
T Consensus       215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~  294 (416)
T 2pm9_A          215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES  294 (416)
T ss_dssp             CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS
T ss_pred             CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC
Confidence            88999999999877888999998   9999999986 5666665  567899999999 889999999999999999988


Q ss_pred             ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 004207          714 QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK  768 (768)
Q Consensus       714 ~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IWD  768 (768)
                      .....                .+..|...|++++|+|++ .+|++++.||.|+|||
T Consensus       295 ~~~~~----------------~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~  334 (416)
T 2pm9_A          295 AEQLS----------------QFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQT  334 (416)
T ss_dssp             CCEEE----------------EEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEE
T ss_pred             Cccce----------------eecCCCCceEEEEECCCCCCEEEEEecCCcEEEEE
Confidence            65432                344799999999999999 8999999999999996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.5e-27  Score=255.73  Aligned_cols=207  Identities=23%  Similarity=0.349  Sum_probs=170.0

Q ss_pred             eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEe-cc-CCCCEEEEEEcCCCCEEEEEeCCCc
Q 004207          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTL-EE-HTQWITDVRFSPSLSRLATSSADRT  620 (768)
Q Consensus       545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~--~~~~tl-~~-h~~~V~sl~fspdg~~LaTgs~Dgt  620 (768)
                      +..+..+.+|.++|.+++|+++  +||+|+.|++|+|||+.++  +.+..+ .+ |...|.+|+|+|++++|++|+.|++
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~   81 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST   81 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence            3456788899999999999987  9999999999999999874  455566 44 9999999999999999999999999


Q ss_pred             EEEEECCCC------CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC----CeeEEEEec-CCCeeEEE
Q 004207          621 VRVWDTENP------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKC-QSGATQMR  689 (768)
Q Consensus       621 IrVWDl~t~------~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s----g~~i~~~~~-~~~i~sl~  689 (768)
                      |+|||++..      ...+..+.+|...|.+++|+|++. +|++|+.|++|++||++.    .+++..+.. ...|.+++
T Consensus        82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             EEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence            999998642      134677889999999999999976 677999999999999953    245666654 56799999


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC--CCEEEEEECCCcEEEe
Q 004207          690 FQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV--NGMVASASHDKCVKIW  767 (768)
Q Consensus       690 fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd--g~~LaSgs~DG~V~IW  767 (768)
                      |+|++.+|++++.|+.|++||..+....              ....+.+|...|.+++|+|+  +.+|++|+.|++|+||
T Consensus       161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw  226 (330)
T 2hes_X          161 WHPSEALLASSSYDDTVRIWKDYDDDWE--------------CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW  226 (330)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEEETTEEE--------------EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCee--------------EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence            9999999999999999999997654210              12345689999999999998  6799999999999999


Q ss_pred             C
Q 004207          768 K  768 (768)
Q Consensus       768 D  768 (768)
                      |
T Consensus       227 ~  227 (330)
T 2hes_X          227 K  227 (330)
T ss_dssp             E
T ss_pred             E
Confidence            6

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=1.6e-27  Score=261.72  Aligned_cols=198  Identities=17%  Similarity=0.145  Sum_probs=162.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004207          553 ASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs--~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~  630 (768)
                      .+...+.+++|||||++|++++  .|++|+|||+++++++..+. |...|++|+|+|++++|++++.| .+++|+..++.
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~  208 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS  208 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCC
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCc
Confidence            3456789999999999977554  78999999999999998886 77889999999999999999855 56777776666


Q ss_pred             eeE-EEeecCCCCeEEEEEeCCCCeEEEEEeCCC----cEEEEECCCCeeE----EEEe-cCCCeeEEEEecCCCEEEEE
Q 004207          631 YSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSCA----GVFK-CQSGATQMRFQPRLGRILAA  700 (768)
Q Consensus       631 ~~~-~~~~~h~~~V~slafsp~g~~lLaSgs~Dg----~I~iWDl~sg~~i----~~~~-~~~~i~sl~fsp~~~~llag  700 (768)
                      ... .....|...|.+++|+|++.. +++++.|+    .|++||+......    ..+. +...|.+++|+|++.+|++|
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~-l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasg  287 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTV-LIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLA  287 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEE-EEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCE-EEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEE
Confidence            533 345678889999999999874 44666565    6888998776542    2233 35679999999999999999


Q ss_pred             EcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          701 AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +.|+.|+|||+++++++..+               +.+|...|++|+|+||+.+|||||.|++|+|||
T Consensus       288 s~D~~V~iwd~~~~~~~~~~---------------~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~  340 (365)
T 4h5i_A          288 SNDNSIALVKLKDLSMSKIF---------------KQAHSFAITEVTISPDSTYVASVSAANTIHIIK  340 (365)
T ss_dssp             ETTSCEEEEETTTTEEEEEE---------------TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             cCCCEEEEEECCCCcEEEEe---------------cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            99999999999887654321               248999999999999999999999999999996

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=4e-28  Score=269.64  Aligned_cols=244  Identities=11%  Similarity=0.226  Sum_probs=192.9

Q ss_pred             CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCC------------CCeEEEEEcCC
Q 004207          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST------------SKVESCHFSPD  566 (768)
Q Consensus       499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~------------~~I~sl~fSpd  566 (768)
                      ...+.+.+.+|++|+.|+.|++|........        .......+..+..+.+|.            +.|++++|+|+
T Consensus        33 ~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~--------~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           33 TVEFNHSGELLATGDKGGRVVIFQQEQENKI--------QSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEEECC-------------CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEecCCCCC--------CcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence            3344556789999999999999976544211        011123455677788998            88999999999


Q ss_pred             C--CEEEEEeCCCcEEEEECCCCeEE---------------------------------------EE-eccCCCCEEEEE
Q 004207          567 G--KLLATGGHDKKAVLWCTESFTVK---------------------------------------ST-LEEHTQWITDVR  604 (768)
Q Consensus       567 g--~~LaSgs~Dg~I~VWdl~t~~~~---------------------------------------~t-l~~h~~~V~sl~  604 (768)
                      +  .+|++++.|++|+|||+.++...                                       .. ..+|...|++++
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            8  79999999999999998764432                                       12 367999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCCeeEE-------EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee--
Q 004207          605 FSPSLSRLATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--  675 (768)
Q Consensus       605 fspdg~~LaTgs~DgtIrVWDl~t~~~~~~-------~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~--  675 (768)
                      |+|++++|++| .|++|+|||+++....+.       .+.+|...|.+++|+|++..+|++|+.||.|++||+++++.  
T Consensus       185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            99999999998 899999999985444344       25689999999999999856888999999999999999886  


Q ss_pred             --EEEEecCC-------------CeeEEEEecCCCEEEEEEcCCeEEEEECCC-ceEeeecceeEEeecCCCceEEeccC
Q 004207          676 --AGVFKCQS-------------GATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQTLELWNMTENKTLTLSAH  739 (768)
Q Consensus       676 --i~~~~~~~-------------~i~sl~fsp~~~~llags~Dg~I~IwD~~t-~~~~~~~~~I~iwd~~~~~~~~l~~H  739 (768)
                        +..+..+.             .|.+++|+|++.+|++++. +.|++||+++ ......                +..|
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~----------------~~~~  326 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVET----------------YQVH  326 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCC----------------EESC
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccce----------------eecc
Confidence              67776643             7999999999999999888 9999999986 443222                2233


Q ss_pred             CC---------------CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          740 DK---------------LVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       740 ~~---------------~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ..               .+..++|+|++.+|++|+.||.|+|||
T Consensus       327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd  370 (447)
T 3dw8_B          327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFD  370 (447)
T ss_dssp             GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEE
T ss_pred             ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEE
Confidence            22               134599999999999999999999997

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3e-28  Score=280.95  Aligned_cols=252  Identities=10%  Similarity=0.046  Sum_probs=189.9

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~  585 (768)
                      ..+|++|+.|++|++|.............   .     .......+.+|...|+|++|++++ .|++|+.||+|++||+.
T Consensus       225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~---~-----~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~  295 (524)
T 2j04_B          225 VGCLSFVSQEGTINFLEIIDNATDVHVFK---M-----CEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLT  295 (524)
T ss_dssp             SCEEEEEETTSCEEEEECCCCSSSSSEEE---C-----CCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETT
T ss_pred             CceEEEEecCCeEEEEEcCCCccccccce---e-----ecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECC
Confidence            57999999999999997754321100000   0     001234578999999999999864 89999999999999998


Q ss_pred             CCe-EEEEeccCCCCEEEE--EEcCCC-CEEEEEeCCCcEEEEECCCCCeeEEEeecCCC--CeEEEEEeCCCCeEEEEE
Q 004207          586 SFT-VKSTLEEHTQWITDV--RFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHST--TVMSLDFHPSKEDLLCSC  659 (768)
Q Consensus       586 t~~-~~~tl~~h~~~V~sl--~fspdg-~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~--~V~slafsp~g~~lLaSg  659 (768)
                      ++. +...+.+|...|++|  +|++++ .+|+||+.|++|+|||+++++. +..+.+|..  .|.+++|+|++.. |+++
T Consensus       296 ~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~-~~~~~~~~~~~~v~~v~fsp~~~~-l~s~  373 (524)
T 2j04_B          296 DPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT-TKTTVSRFRGSNLVPVVYCPQIYS-YIYS  373 (524)
T ss_dssp             BCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH-HCEEEEECSCCSCCCEEEETTTTE-EEEE
T ss_pred             CCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc-ccccccccccCcccceEeCCCcCe-EEEe
Confidence            763 456688999999999  578887 8999999999999999987664 445555543  5889999999774 6688


Q ss_pred             eCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEee--------------ecc---
Q 004207          660 DNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL--------------KLQ---  721 (768)
Q Consensus       660 s~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~--------------~~~---  721 (768)
                      +.|++|++||++++.++..+. +...|.+|+|+|++..|++|+.|++|++||+.......              .+.   
T Consensus       374 ~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp  453 (524)
T 2j04_B          374 DGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSI  453 (524)
T ss_dssp             CSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCS
T ss_pred             CCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCC
Confidence            889999999999998877665 45679999999999999999999999999975431110              000   


Q ss_pred             ---eeEEee---c-----CCCceEEeccCCCCeeEEEEeCCCC---EEEEEECCCcEEEeC
Q 004207          722 ---TLELWN---M-----TENKTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK  768 (768)
Q Consensus       722 ---~I~iwd---~-----~~~~~~~l~~H~~~I~sla~spdg~---~LaSgs~DG~V~IWD  768 (768)
                         .+++|+   +     .......+.+|...|.+|+|+|++.   +||+|+.||.|+||+
T Consensus       454 ~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~  514 (524)
T 2j04_B          454 KDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY  514 (524)
T ss_dssp             SSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred             CCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence               233433   1     1222346778999999999999964   999999999999995

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.96  E-value=3e-27  Score=283.57  Aligned_cols=235  Identities=21%  Similarity=0.314  Sum_probs=207.7

Q ss_pred             CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK  578 (768)
Q Consensus       499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~  578 (768)
                      ...+++.+.++++|+.|+.|++|+...+                   ..+..+.+|.+.|++++|+|++++|++++.||.
T Consensus        18 ~i~~sp~~~~la~~~~~g~v~iwd~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   78 (814)
T 3mkq_A           18 GIDFHPTEPWVLTTLYSGRVEIWNYETQ-------------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR   78 (814)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCC-------------------ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCe
Confidence            3344556789999999999999965332                   245667799999999999999999999999999


Q ss_pred             EEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207          579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (768)
Q Consensus       579 I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS  658 (768)
                      |+|||+.+++.+..+.+|...|++++|+|++.+|++++.||+|++||++++......+.+|...|.+++|+|++..+|++
T Consensus        79 i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  158 (814)
T 3mkq_A           79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS  158 (814)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred             EEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence            99999999999999999999999999999999999999999999999998766688889999999999999944557889


Q ss_pred             EeCCCcEEEEECCCCeeEEEEecC--CCeeEEEEec--CCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceE
Q 004207          659 CDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQP--RLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTL  734 (768)
Q Consensus       659 gs~Dg~I~iWDl~sg~~i~~~~~~--~~i~sl~fsp--~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~  734 (768)
                      ++.||.|++||++++.....+..+  ..+.+++|+|  ++.++++++.|+.|++||+.+.....                
T Consensus       159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~----------------  222 (814)
T 3mkq_A          159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA----------------  222 (814)
T ss_dssp             EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEE----------------
T ss_pred             EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE----------------
Confidence            999999999999988877776653  6799999999  89999999999999999998865532                


Q ss_pred             EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          735 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       735 ~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .+.+|...|++++|+|++.+|++++.||.|++||
T Consensus       223 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd  256 (814)
T 3mkq_A          223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN  256 (814)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            3447889999999999999999999999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.96  E-value=9.7e-28  Score=262.41  Aligned_cols=215  Identities=15%  Similarity=0.206  Sum_probs=173.0

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCCeEE----EEeccCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 004207          552 PASTSKVESCHFSPDGKLLATGGH------DKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTV  621 (768)
Q Consensus       552 ~~H~~~I~sl~fSpdg~~LaSgs~------Dg~I~VWdl~t~~~~----~tl~~h~~~V~sl~fspdg~~LaTgs~DgtI  621 (768)
                      ..|...|++|+|+|||++||+|+.      |+.|++|+..++...    .....|...|++++|+|++. +++++.||+|
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v  117 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV  117 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence            479999999999999999999997      778999998776543    33456888999999999975 5678899999


Q ss_pred             EEEECCCCCee---EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCC-E
Q 004207          622 RVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-R  696 (768)
Q Consensus       622 rVWDl~t~~~~---~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~-~  696 (768)
                      +|||+.+++..   .....+|...|++|+|+|++. +|++|+.|+.|++||+++++++..+.. ...|.+++|++++. .
T Consensus       118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~  196 (357)
T 4g56_B          118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI  196 (357)
T ss_dssp             EEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred             EEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCce
Confidence            99999876532   234557999999999999987 566999999999999999999998875 56799999999875 6


Q ss_pred             EEEEEcCCeEEEEECCCceEeeecc----------------------------eeEEeecCCCceE-EeccCCCCeeEEE
Q 004207          697 ILAAAIENYISILDVETQVCRLKLQ----------------------------TLELWNMTENKTL-TLSAHDKLVSSLA  747 (768)
Q Consensus       697 llags~Dg~I~IwD~~t~~~~~~~~----------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla  747 (768)
                      +++++.|+.|++||+++........                            .|++||+.+++.. .+.+|...|++++
T Consensus       197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~  276 (357)
T 4g56_B          197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLA  276 (357)
T ss_dssp             EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEE
T ss_pred             eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEE
Confidence            8889999999999998754332211                            6899999887654 6778999999999


Q ss_pred             EeCCC-CEEEEEECCCcEEEeC
Q 004207          748 ASTVN-GMVASASHDKCVKIWK  768 (768)
Q Consensus       748 ~spdg-~~LaSgs~DG~V~IWD  768 (768)
                      |+|++ .+|++|+.||+|+|||
T Consensus       277 ~sp~~~~~lasgs~D~~i~iwd  298 (357)
T 4g56_B          277 YSYHSSPFLASISEDCTVAVLD  298 (357)
T ss_dssp             ECSSSSCCEEEEETTSCEEEEC
T ss_pred             EcCCCCCEEEEEeCCCEEEEEE
Confidence            99987 5899999999999997

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9.9e-27  Score=244.64  Aligned_cols=237  Identities=16%  Similarity=0.198  Sum_probs=199.0

Q ss_pred             CCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (768)
Q Consensus       504 ~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWd  583 (768)
                      ..+.++++|+.|+.|++|.....                   .....+..|...|.+++|+|++++|++++.|+.|++|+
T Consensus        27 ~~~~~l~s~~~dg~v~vw~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~   87 (313)
T 3odt_A           27 VDDSKVASVSRDGTVRLWSKDDQ-------------------WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP   87 (313)
T ss_dssp             EETTEEEEEETTSEEEEEEESSS-------------------EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             cCCCEEEEEEcCCcEEEEECCCC-------------------EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            45678999999999999965321                   23456678999999999999999999999999999999


Q ss_pred             CCCC---eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe
Q 004207          584 TESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (768)
Q Consensus       584 l~t~---~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs  660 (768)
                      +...   +.+..+.+|...|.+++|  ++++|++++.|++|++||  . ...+..+..|...|.+++|+|....++++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  162 (313)
T 3odt_A           88 LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--E-GSLVYNLQAHNASVWDAKVVSFSENKFLTAS  162 (313)
T ss_dssp             TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--T-TEEEEEEECCSSCEEEEEEEETTTTEEEEEE
T ss_pred             eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--C-CcEEEecccCCCceeEEEEccCCCCEEEEEE
Confidence            8654   567788899999999999  577999999999999999  2 3457788889999999999994445777999


Q ss_pred             CCCcEEEEECCCCeeEEEEe--cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-----------------
Q 004207          661 NNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-----------------  721 (768)
Q Consensus       661 ~Dg~I~iWDl~sg~~i~~~~--~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-----------------  721 (768)
                      .|+.|++||.  ...+..+.  +...+.+++|+|++. +++++.|+.|++||+++......+.                 
T Consensus       163 ~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l  239 (313)
T 3odt_A          163 ADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDI  239 (313)
T ss_dssp             TTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCE
T ss_pred             CCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCE
Confidence            9999999994  45566555  467799999999876 9999999999999999876554432                 


Q ss_pred             -------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 -------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 -------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                             .|++||+.+++.. .+..|...|++++|+|++. |++++.||.|+|||
T Consensus       240 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~  293 (313)
T 3odt_A          240 VSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS  293 (313)
T ss_dssp             EEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred             EEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence                   8999999888765 5678889999999999998 66799999999996

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=4.1e-27  Score=263.48  Aligned_cols=259  Identities=15%  Similarity=0.242  Sum_probs=202.6

Q ss_pred             CccccCC-CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC
Q 004207          499 PNQLTDM-DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHD  576 (768)
Q Consensus       499 ~~~l~~~-~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~-~LaSgs~D  576 (768)
                      ...+.+. ..++++|+.|+.|++|..........         .......+..+.+|...|++++|+|++. +|++|+.|
T Consensus       133 ~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  203 (430)
T 2xyi_A          133 RARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD  203 (430)
T ss_dssp             EEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred             EEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence            3344443 57999999999999997643211100         0111334566779999999999999988 99999999


Q ss_pred             CcEEEEECCCCeE-------EEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCC--eeEEEeecCCCCeEEE
Q 004207          577 KKAVLWCTESFTV-------KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSL  646 (768)
Q Consensus       577 g~I~VWdl~t~~~-------~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~~--~~~~~~~~h~~~V~sl  646 (768)
                      |.|+|||+.++..       ...+.+|...|.+++|+| ++.+|++++.|+.|++||++++.  ..+..+..|...|.++
T Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i  283 (430)
T 2xyi_A          204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL  283 (430)
T ss_dssp             SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEE
T ss_pred             CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEE
Confidence            9999999987321       456778999999999999 67899999999999999999763  3466778899999999


Q ss_pred             EEeCCCCeEEEEEeCCCcEEEEECCC-CeeEEEEe-cCCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCceEeeeccee
Q 004207          647 DFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFK-CQSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQTL  723 (768)
Q Consensus       647 afsp~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~-~~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~~~~~~~I  723 (768)
                      +|+|++..+|++|+.||.|++||+++ ..++..+. +...|.+++|+|++. .|++++.|+.|+|||+........... 
T Consensus       284 ~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-  362 (430)
T 2xyi_A          284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED-  362 (430)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH-
T ss_pred             EeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccc-
Confidence            99999988999999999999999998 56677776 467899999999985 588888999999999977322110000 


Q ss_pred             EEeecCCCceEEeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 004207          724 ELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK  768 (768)
Q Consensus       724 ~iwd~~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs~DG~V~IWD  768 (768)
                       .-+........+.+|...|++++|+|++. +|++++.||.|+||+
T Consensus       363 -~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          363 -AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             -HHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             -cccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence             00000122335568999999999999998 999999999999996

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=3.1e-27  Score=260.83  Aligned_cols=230  Identities=17%  Similarity=0.221  Sum_probs=189.1

Q ss_pred             EEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 004207          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES  586 (768)
Q Consensus       508 ~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t  586 (768)
                      ++++++.|+.|++|......               .....+..+.+|.+.|++++|+| ++.+|++|+.||+|+|||+.+
T Consensus        49 ~~~~~~~~g~i~v~~~~~~~---------------~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~  113 (402)
T 2aq5_A           49 LICEASGGGAFLVLPLGKTG---------------RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD  113 (402)
T ss_dssp             EEBCCSSSCCEEEEETTCCE---------------ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred             EEEEEcCCCEEEEEECccCC---------------CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence            44568899999999653321               00112345679999999999999 999999999999999999998


Q ss_pred             C-------eEEEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCeeEEEe--ecCCCCeEEEEEeCCCCeEE
Q 004207          587 F-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLL  656 (768)
Q Consensus       587 ~-------~~~~tl~~h~~~V~sl~fspdg-~~LaTgs~DgtIrVWDl~t~~~~~~~~--~~h~~~V~slafsp~g~~lL  656 (768)
                      +       +.+..+.+|...|.+++|+|++ .+|++++.|++|+|||+++++. +..+  .+|...|.+++|+|++. +|
T Consensus       114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l  191 (402)
T 2aq5_A          114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-VLTLGPDVHPDTIYSVDWSRDGA-LI  191 (402)
T ss_dssp             TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-EEEECTTTCCSCEEEEEECTTSS-CE
T ss_pred             CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-cEEEecCCCCCceEEEEECCCCC-EE
Confidence            7       6678889999999999999997 6999999999999999998765 6667  78999999999999877 56


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEE-ecCC--CeeEEEEecCCCEEEEE---EcCCeEEEEECCCceEeeecceeEEeecCC
Q 004207          657 CSCDNNSEIRYWSINNGSCAGVF-KCQS--GATQMRFQPRLGRILAA---AIENYISILDVETQVCRLKLQTLELWNMTE  730 (768)
Q Consensus       657 aSgs~Dg~I~iWDl~sg~~i~~~-~~~~--~i~sl~fsp~~~~llag---s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~  730 (768)
                      ++++.|+.|++||+++++++..+ ..+.  .+.++.|+|++.+++++   +.|+.|++||+++.....            
T Consensus       192 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~------------  259 (402)
T 2aq5_A          192 CTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL------------  259 (402)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS------------
T ss_pred             EEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc------------
Confidence            68889999999999999999888 4433  37899999998878777   589999999998754311            


Q ss_pred             CceEEeccCCCCeeEEEEeCCCCEEEEE-ECCCcEEEeC
Q 004207          731 NKTLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK  768 (768)
Q Consensus       731 ~~~~~l~~H~~~I~sla~spdg~~LaSg-s~DG~V~IWD  768 (768)
                        ......|...|.+++|+|++.+|+++ +.||.|+|||
T Consensus       260 --~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d  296 (402)
T 2aq5_A          260 --SLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFE  296 (402)
T ss_dssp             --EEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEE
T ss_pred             --eEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEE
Confidence              01122577789999999999998754 4799999996

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.5e-27  Score=259.09  Aligned_cols=237  Identities=17%  Similarity=0.244  Sum_probs=195.8

Q ss_pred             ccccCCCC-EEEee----------cCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC
Q 004207          500 NQLTDMDR-FVDDG----------SLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK  568 (768)
Q Consensus       500 ~~l~~~~~-~latG----------S~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~  568 (768)
                      ..+.+.+. ++++|          +.|+.|++|........                ..+.. ..|...|++++|+|++.
T Consensus        18 ~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~----------------~~~~~-~~~~~~v~~~~~s~~~~   80 (416)
T 2pm9_A           18 FAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE----------------KPIAS-LQVDSKFNDLDWSHNNK   80 (416)
T ss_dssp             CCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC----------------SCSCC-CCCSSCEEEEEECSSSS
T ss_pred             EeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC----------------cEEEE-EecCCceEEEEECCCCC
Confidence            34444544 88888          88999999966433100                01111 25788999999999999


Q ss_pred             EEEEEeCCCcEEEEECCC----CeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCC------ee--EEE
Q 004207          569 LLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD------YS--LRT  635 (768)
Q Consensus       569 ~LaSgs~Dg~I~VWdl~t----~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~------~~--~~~  635 (768)
                      +|++++.||.|+|||+.+    .+.+..+.+|...|++++|+|+ +.+|++++.|++|++||++++.      ..  +..
T Consensus        81 ~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  160 (416)
T 2pm9_A           81 IIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ  160 (416)
T ss_dssp             CEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC
T ss_pred             eEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc
Confidence            999999999999999987    4588889999999999999998 8999999999999999998876      22  223


Q ss_pred             eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-------CCCeeEEEEecCC-CEEEEEEcCC---
Q 004207          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRL-GRILAAAIEN---  704 (768)
Q Consensus       636 ~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-------~~~i~sl~fsp~~-~~llags~Dg---  704 (768)
                      +..|...|.+++|+|++..+|++++.|+.|++||+++++++..+..       ...+.+++|+|++ ..+++++.|+   
T Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~  240 (416)
T 2pm9_A          161 SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDP  240 (416)
T ss_dssp             SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSC
T ss_pred             ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCc
Confidence            4678999999999999777888999999999999999999888876       4679999999997 5788888888   


Q ss_pred             eEEEEECCCceEeeecceeEEeecCCCceEEec-cCCCCeeEEEEeC-CCCEEEEEECCCcEEEeC
Q 004207          705 YISILDVETQVCRLKLQTLELWNMTENKTLTLS-AHDKLVSSLAAST-VNGMVASASHDKCVKIWK  768 (768)
Q Consensus       705 ~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~-~H~~~I~sla~sp-dg~~LaSgs~DG~V~IWD  768 (768)
                      .|++||+++....               ...+. +|...|++++|+| ++.+|++++.||.|+|||
T Consensus       241 ~i~~~d~~~~~~~---------------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd  291 (416)
T 2pm9_A          241 SILIWDLRNANTP---------------LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN  291 (416)
T ss_dssp             CCCEEETTSTTSC---------------SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred             eEEEEeCCCCCCC---------------cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence            9999999874211               12344 7899999999999 899999999999999997

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.95  E-value=1.6e-26  Score=290.86  Aligned_cols=250  Identities=22%  Similarity=0.392  Sum_probs=216.2

Q ss_pred             ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 004207          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD  576 (768)
Q Consensus       497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D  576 (768)
                      +....+.+.+.++++|+.|++|++|.....                   ..+..+.+|.+.|++++|+|++++|++|+.|
T Consensus       618 v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~-------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d  678 (1249)
T 3sfz_A          618 VYHACFSQDGQRIASCGADKTLQVFKAETG-------------------EKLLDIKAHEDEVLCCAFSSDDSYIATCSAD  678 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCC-------------------CEEEEeccCCCCEEEEEEecCCCEEEEEeCC
Confidence            334455667789999999999999965433                   2456778999999999999999999999999


Q ss_pred             CcEEEEECCCCeEEEEeccCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCe
Q 004207          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  654 (768)
Q Consensus       577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fsp--dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~  654 (768)
                      +.|+|||+.+++.+.++.+|...|.+++|+|  ++.++++|+.|++|++||++++.. +..+.+|...|.+++|+|++. 
T Consensus       679 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~-  756 (1249)
T 3sfz_A          679 KKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-RNTMFGHTNSVNHCRFSPDDE-  756 (1249)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-EEEECCCSSCEEEEEECSSTT-
T ss_pred             CeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-hheecCCCCCEEEEEEecCCC-
Confidence            9999999999999999999999999999999  566899999999999999998775 778889999999999999987 


Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEecC--------------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeec
Q 004207          655 LLCSCDNNSEIRYWSINNGSCAGVFKCQ--------------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL  720 (768)
Q Consensus       655 lLaSgs~Dg~I~iWDl~sg~~i~~~~~~--------------~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~  720 (768)
                      +|++|+.||.|++||++++.....+...              ..+.+++|+|++..+++++ ++.|.+||+.+.......
T Consensus       757 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~  835 (1249)
T 3sfz_A          757 LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEI  835 (1249)
T ss_dssp             EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEE
Confidence            6669999999999999999887776532              2578899999998887776 789999999876544332


Q ss_pred             c--------------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          721 Q--------------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       721 ~--------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .                          .+++||+.++... .+.+|...|++++|+|++.+|++++.||.|++||
T Consensus       836 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~  910 (1249)
T 3sfz_A          836 HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE  910 (1249)
T ss_dssp             ECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            1                          6889999887665 5779999999999999999999999999999996

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6.2e-27  Score=260.52  Aligned_cols=285  Identities=9%  Similarity=0.148  Sum_probs=211.2

Q ss_pred             cccCCCCCceEEEEecCC---C----------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccC
Q 004207          474 LQHNGASSKSLLMFGSDG---M----------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG  540 (768)
Q Consensus       474 l~~s~s~~~~~l~~~~~~---~----------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~  540 (768)
                      +...++.+..+.+|....   .          +...+....+.+.+.++++|+.|+.|++|.......+.  ..+   . 
T Consensus        78 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~---~-  151 (437)
T 3gre_A           78 YLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQES--EVK---F-  151 (437)
T ss_dssp             EEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETT--EEE---E-
T ss_pred             EEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCc--eee---c-
Confidence            456667788888887654   1          12234456667788999999999999999653111110  000   0 


Q ss_pred             CCceeeEEEEe--cC--CCCCeEEEE--EcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc--CCCCEEEEEEcCCCCEE
Q 004207          541 KGFTFTEFQLI--PA--STSKVESCH--FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRL  612 (768)
Q Consensus       541 ~~~~~~~~~~l--~~--H~~~I~sl~--fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~--h~~~V~sl~fspdg~~L  612 (768)
                        .....+..+  ..  +...+.++.  +++++.+|++|+.|+.|++||+.+++++..+..  |...|++++|+|++.+|
T Consensus       152 --~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l  229 (437)
T 3gre_A          152 --LNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVL  229 (437)
T ss_dssp             --EEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEE
T ss_pred             --cccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEE
Confidence              011122222  23  678899998  668999999999999999999999999999988  88999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEee-cCCCCeEEEEEeCC---CCeEEEEEeCCCcEEEEECCCCeeEEEEec-------
Q 004207          613 ATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------  681 (768)
Q Consensus       613 aTgs~DgtIrVWDl~t~~~~~~~~~-~h~~~V~slafsp~---g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-------  681 (768)
                      ++|+.||+|+|||++++.. +..+. .|...|.+++|+|.   ...+|++|+.|+.|++||+++++++..+..       
T Consensus       230 ~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  308 (437)
T 3gre_A          230 ILGTTRGIIDIWDIRFNVL-IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSM  308 (437)
T ss_dssp             EEEETTSCEEEEETTTTEE-EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCG
T ss_pred             EEEcCCCeEEEEEcCCccE-EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCcc
Confidence            9999999999999998654 56554 78889999988764   244788999999999999999999888873       


Q ss_pred             --------------------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecce-------------------
Q 004207          682 --------------------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQT-------------------  722 (768)
Q Consensus       682 --------------------~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~-------------------  722 (768)
                                          ...|.+++|+ ++.+|++++.|+.|++||+.+..+...+..                   
T Consensus       309 ~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (437)
T 3gre_A          309 EHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTM  387 (437)
T ss_dssp             GGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEE
T ss_pred             ceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEE
Confidence                                2337889999 668899999999999999998765443320                   


Q ss_pred             -eEEeecCC-CceEEeccCCCCeeEEEEeCC--CCEEEEEECCCcEEEeC
Q 004207          723 -LELWNMTE-NKTLTLSAHDKLVSSLAASTV--NGMVASASHDKCVKIWK  768 (768)
Q Consensus       723 -I~iwd~~~-~~~~~l~~H~~~I~sla~spd--g~~LaSgs~DG~V~IWD  768 (768)
                       +..|+... ........|.+.|++++|+++  +.+|++|+.||.|+||+
T Consensus       388 ~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          388 LLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             EEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence             00011111 111123359999999999998  77999999999999996

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.95  E-value=1.5e-27  Score=255.91  Aligned_cols=206  Identities=20%  Similarity=0.265  Sum_probs=166.6

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 004207          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD  625 (768)
Q Consensus       550 ~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~--~~~tl~~h~~~V~sl~fsp--dg~~LaTgs~DgtIrVWD  625 (768)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++  .+.++.+|...|++|+|++  ++++|++|+.|++|+|||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            456899999999999999999999999999999998765  4678899999999999986  489999999999999999


Q ss_pred             CCCCC-eeEEEeecCCCCeEEEEEeCCC-CeEEEEEeCCCcEEEEECCCCeeE---EEEe-cCCCeeEEEEecC------
Q 004207          626 TENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCA---GVFK-CQSGATQMRFQPR------  693 (768)
Q Consensus       626 l~t~~-~~~~~~~~h~~~V~slafsp~g-~~lLaSgs~Dg~I~iWDl~sg~~i---~~~~-~~~~i~sl~fsp~------  693 (768)
                      ++++. ..+..+.+|...|.+++|+|+. ..+|++|+.|+.|++||++.+...   ..+. +...+.+++|+|+      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            98764 3456788899999999999983 357889999999999999876322   2222 2456888999987      


Q ss_pred             -----------CCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC----CEEEEE
Q 004207          694 -----------LGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN----GMVASA  758 (768)
Q Consensus       694 -----------~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg----~~LaSg  758 (768)
                                 +.+|++++.|+.|++||++......             ....+.+|...|.+++|+|++    .+|+++
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~-------------~~~~l~~h~~~V~~v~~sp~~~~~~~~las~  234 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK-------------EEQKLEAHSDWVRDVAWAPSIGLPTSTIASC  234 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE-------------EEECCBCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccc-------------eeeecccCCCceEEEEecCCCCCCCceEEEE
Confidence                       3679999999999999986431100             112456899999999999986    799999


Q ss_pred             ECCCcEEEeC
Q 004207          759 SHDKCVKIWK  768 (768)
Q Consensus       759 s~DG~V~IWD  768 (768)
                      +.||+|+|||
T Consensus       235 s~D~~v~iw~  244 (316)
T 3bg1_A          235 SQDGRVFIWT  244 (316)
T ss_dssp             ETTCEEEEEE
T ss_pred             cCCCeEEEEE
Confidence            9999999995

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=8.6e-27  Score=251.58  Aligned_cols=208  Identities=21%  Similarity=0.309  Sum_probs=178.1

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeEEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEE
Q 004207          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV  623 (768)
Q Consensus       548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~--t~~~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrV  623 (768)
                      +..+.+|.+.|++++|+|++++|++|+.||.|+|||+.  +.+.+..+.+|...|++++|+++  +.+|++++.||+|+|
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   83 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   83 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence            45678999999999999999999999999999999998  56777889999999999999987  899999999999999


Q ss_pred             EECCCCCe-eEEEeecCCCCeEEEEEeCC--CCeEEEEEeCCCcEEEEECCCCeeE--EEE-ecCCCeeEEEEec-----
Q 004207          624 WDTENPDY-SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCA--GVF-KCQSGATQMRFQP-----  692 (768)
Q Consensus       624 WDl~t~~~-~~~~~~~h~~~V~slafsp~--g~~lLaSgs~Dg~I~iWDl~sg~~i--~~~-~~~~~i~sl~fsp-----  692 (768)
                      ||++++.. .+..+..|...|.+++|+|+  +. +|++++.|+.|++||++.+...  ..+ .+...|.+++|+|     
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  162 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred             EEcCCCceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence            99998762 46777889999999999998  55 6778999999999999987432  223 3467799999999     


Q ss_pred             --------CCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC---CCEEEEEECC
Q 004207          693 --------RLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV---NGMVASASHD  761 (768)
Q Consensus       693 --------~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd---g~~LaSgs~D  761 (768)
                              ++.++++++.|+.|++||+++......            ....+.+|...|++++|+|+   +.+|++++.|
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d  230 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV------------LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD  230 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETTTTEEE------------EEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCCCccee------------eEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence                    689999999999999999876532211            12245689999999999999   8999999999


Q ss_pred             CcEEEeC
Q 004207          762 KCVKIWK  768 (768)
Q Consensus       762 G~V~IWD  768 (768)
                      |.|+|||
T Consensus       231 g~i~iwd  237 (379)
T 3jrp_A          231 RTCIIWT  237 (379)
T ss_dssp             SCEEEEE
T ss_pred             CEEEEEe
Confidence            9999996

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.95  E-value=1.6e-27  Score=259.32  Aligned_cols=275  Identities=15%  Similarity=0.142  Sum_probs=193.2

Q ss_pred             ccCCCCCceEEEEecCCC----------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCce
Q 004207          475 QHNGASSKSLLMFGSDGM----------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT  544 (768)
Q Consensus       475 ~~s~s~~~~~l~~~~~~~----------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~  544 (768)
                      ...++.+..+.+|.....          +...+....+.+.+.++++|+.|++|++|......                .
T Consensus        26 l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~----------------~   89 (377)
T 3dwl_C           26 FVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG----------------T   89 (377)
T ss_dssp             EECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----------------------C
T ss_pred             EEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC----------------c
Confidence            344555566666655432          22334455667778899999999999999654331                1


Q ss_pred             eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEecc-CCCCEEEEEEcCCCCEEEEEeCCCc
Q 004207          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEE-HTQWITDVRFSPSLSRLATSSADRT  620 (768)
Q Consensus       545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~---~~~tl~~-h~~~V~sl~fspdg~~LaTgs~Dgt  620 (768)
                      +.....+.+|...|++++|+|++++|++++.|+.|++||+++++   +...+.. |...|++++|+|++++|++++.|++
T Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~  169 (377)
T 3dwl_C           90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRK  169 (377)
T ss_dssp             CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSC
T ss_pred             eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCE
Confidence            23355677899999999999999999999999999999999877   4677777 9999999999999999999999999


Q ss_pred             EEEEECCCC-----------------CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee----EEEE
Q 004207          621 VRVWDTENP-----------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVF  679 (768)
Q Consensus       621 IrVWDl~t~-----------------~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~----i~~~  679 (768)
                      |++||++..                 ...+..+ +|...|.+++|+|++. +|++++.|+.|++||++++++    +..+
T Consensus       170 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  247 (377)
T 3dwl_C          170 AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN-ALAYAGHDSSVTIAYPSAPEQPPRALITV  247 (377)
T ss_dssp             EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS-CEEEEETTTEEC-CEECSTTSCEEECCCE
T ss_pred             EEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC-EEEEEeCCCcEEEEECCCCCCcceeeEee
Confidence            999998632                 1234445 8999999999999987 666889999999999999877    5666


Q ss_pred             ec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEe--eecc----------------------ee------E-Ee-
Q 004207          680 KC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR--LKLQ----------------------TL------E-LW-  726 (768)
Q Consensus       680 ~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~--~~~~----------------------~I------~-iw-  726 (768)
                      .. ...|.+++|+|++.+|++++.+ .+.+|+.......  ..+.                      .+      . ++ 
T Consensus       248 ~~~~~~v~~~~~s~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (377)
T 3dwl_C          248 KLSQLPLRSLLWANESAIVAAGYNY-SPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRN  326 (377)
T ss_dssp             ECSSSCEEEEEEEETTEEEEEESSS-SEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------------
T ss_pred             cCCCCceEEEEEcCCCCEEEEEcCC-cEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccc
Confidence            54 4569999999998777666544 4557776532100  0000                      00      0 00 


Q ss_pred             -ecCC---CceEEeccCCCCeeEEEEeCCC-C---EEEEEECCCcEEEeC
Q 004207          727 -NMTE---NKTLTLSAHDKLVSSLAASTVN-G---MVASASHDKCVKIWK  768 (768)
Q Consensus       727 -d~~~---~~~~~l~~H~~~I~sla~spdg-~---~LaSgs~DG~V~IWD  768 (768)
                       +...   ........|.+.|+++++.+.. .   .|+|||.||.|+|||
T Consensus       327 ~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd  376 (377)
T 3dwl_C          327 MDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT  376 (377)
T ss_dssp             ----------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred             hhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence             0000   0001123599999999976544 3   699999999999997

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.95  E-value=3.3e-26  Score=255.83  Aligned_cols=234  Identities=22%  Similarity=0.410  Sum_probs=201.8

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      .+.++++|+.|+.|++|+....                   ..+..+.+|.+.|++++|  ++++|++|+.||.|+|||+
T Consensus       142 d~~~l~~g~~dg~i~iwd~~~~-------------------~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          142 DDQKIVSGLRDNTIKIWDKNTL-------------------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV  200 (435)
T ss_dssp             CSSEEEEEESSSCEEEEESSSC-------------------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred             CCCEEEEEeCCCeEEEEeCCCC-------------------eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEEC
Confidence            4678999999999999965322                   245667899999999999  7899999999999999999


Q ss_pred             CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee--EEEeecCCCCeEEEEEeCCCCeEEEEEeCC
Q 004207          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (768)
Q Consensus       585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~--~~~~~~h~~~V~slafsp~g~~lLaSgs~D  662 (768)
                      .+++.+.++.+|...|.+++|++  .+|++|+.||+|++||++++...  ...+.+|...|.+++|.  +. ++++|+.|
T Consensus       201 ~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~d  275 (435)
T 1p22_A          201 NTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DK-YIVSASGD  275 (435)
T ss_dssp             SSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TT-EEEEEETT
T ss_pred             CCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--CC-EEEEEeCC
Confidence            99999999999999999999974  59999999999999999876642  26778899999999994  33 77799999


Q ss_pred             CcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc--------------------
Q 004207          663 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------------------  721 (768)
Q Consensus       663 g~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~--------------------  721 (768)
                      |.|++||+++++++..+.. ...+.++.|+  +.++++++.|+.|++||++++.+...+.                    
T Consensus       276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~  353 (435)
T 1p22_A          276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA  353 (435)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEE
T ss_pred             CeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEe
Confidence            9999999999999998885 5668888885  5699999999999999999876654432                    


Q ss_pred             ---eeEEeecCCCc----------eEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 ---TLELWNMTENK----------TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 ---~I~iwd~~~~~----------~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                         .|++||+..+.          ...+.+|.+.|++++|  ++.+|++++.||.|+|||
T Consensus       354 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd  411 (435)
T 1p22_A          354 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  411 (435)
T ss_dssp             TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             CCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence               79999986654          4467899999999999  688999999999999997

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.95  E-value=6.3e-26  Score=250.78  Aligned_cols=224  Identities=19%  Similarity=0.240  Sum_probs=189.4

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEe-cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l-~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      +..+++++.|+.|++|....+.                   ....+ ..|...|++++|+|++++|++|+.||.|+|||+
T Consensus       103 ~~~l~~~~~d~~v~lw~~~~~~-------------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  163 (401)
T 4aez_A          103 NLNVVAVALERNVYVWNADSGS-------------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV  163 (401)
T ss_dssp             TTSEEEEEETTEEEEEETTTCC-------------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCEEEEECCCeEEEeeCCCCc-------------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence            3456778899999999664331                   11222 238899999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc
Q 004207          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (768)
Q Consensus       585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~  664 (768)
                      .+++.+..+.+|...|.+++|+  +.+|++++.||.|++||++.....+..+.+|...|.+++|+|++. +|++|+.|+.
T Consensus       164 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~  240 (401)
T 4aez_A          164 ESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNV  240 (401)
T ss_dssp             TTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             cCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCe
Confidence            9999999999999999999994  579999999999999999976666888999999999999999876 6778999999


Q ss_pred             EEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEE---cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCC
Q 004207          665 IRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA---IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD  740 (768)
Q Consensus       665 I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags---~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~  740 (768)
                      |++||++++.++..+. +...|.+++|+|++..+++.+   .|+.|++||+.++.....+                 .|.
T Consensus       241 v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~-----------------~~~  303 (401)
T 4aez_A          241 VQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-----------------DAG  303 (401)
T ss_dssp             EEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE-----------------ECS
T ss_pred             EEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE-----------------eCC
Confidence            9999999998888876 467799999999877666654   5999999999876553221                 356


Q ss_pred             CCeeEEEEeCCCCEEEEEE--CCCcEEEeC
Q 004207          741 KLVSSLAASTVNGMVASAS--HDKCVKIWK  768 (768)
Q Consensus       741 ~~I~sla~spdg~~LaSgs--~DG~V~IWD  768 (768)
                      ..|.+++|+|++.+|++++  .||.|+|||
T Consensus       304 ~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~  333 (401)
T 4aez_A          304 SQVTSLIWSPHSKEIMSTHGFPDNNLSIWS  333 (401)
T ss_dssp             SCEEEEEECSSSSEEEEEECTTTCEEEEEE
T ss_pred             CcEEEEEECCCCCeEEEEeecCCCcEEEEe
Confidence            7799999999999999954  899999996

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=3.3e-26  Score=245.60  Aligned_cols=220  Identities=17%  Similarity=0.310  Sum_probs=186.5

Q ss_pred             eeeEEEEecCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCC-CeEE-EEeccCCCCEEEEEEcCCCCEEEEEeCC
Q 004207          544 TFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSAD  618 (768)
Q Consensus       544 ~~~~~~~l~~H~~~I~sl~fSpd---g~~LaSgs~Dg~I~VWdl~t-~~~~-~tl~~h~~~V~sl~fspdg~~LaTgs~D  618 (768)
                      .+..+..+.+|.+.|+|++|+|+   |++|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++++|++++.|
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  107 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD  107 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence            34567788999999999999998   69999999999999999987 5544 7888999999999999999999999999


Q ss_pred             CcEEEEECCCCCeeEEEeecCCCCeEEEEE--eCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCE
Q 004207          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDF--HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR  696 (768)
Q Consensus       619 gtIrVWDl~t~~~~~~~~~~h~~~V~slaf--sp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~  696 (768)
                      |+|++||++++..  ..+..|...|.+++|  ++++. +|++++.|+.|++||+++++++..+..+..+.++.+.+.  .
T Consensus       108 g~v~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~  182 (368)
T 3mmy_A          108 KTAKMWDLSSNQA--IQIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP--M  182 (368)
T ss_dssp             SEEEEEETTTTEE--EEEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETT--E
T ss_pred             CcEEEEEcCCCCc--eeeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCC--e
Confidence            9999999998664  346679999999999  77754 677999999999999999999999998888877777754  8


Q ss_pred             EEEEEcCCeEEEEECCCceEee-------------------------------ecceeEEeecCCCc----eEEeccCCC
Q 004207          697 ILAAAIENYISILDVETQVCRL-------------------------------KLQTLELWNMTENK----TLTLSAHDK  741 (768)
Q Consensus       697 llags~Dg~I~IwD~~t~~~~~-------------------------------~~~~I~iwd~~~~~----~~~l~~H~~  741 (768)
                      +++++.++.+.+||++......                               ....+++|++....    ...+..|..
T Consensus       183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  262 (368)
T 3mmy_A          183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS  262 (368)
T ss_dssp             EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred             eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence            8899999999999997642111                               11278899988752    345666665


Q ss_pred             ------------CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          742 ------------LVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       742 ------------~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                  .|++++|+|++.+|++++.||.|+|||
T Consensus       263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd  301 (368)
T 3mmy_A          263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWD  301 (368)
T ss_dssp             C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEE
Confidence                        799999999999999999999999997

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.95  E-value=7.8e-26  Score=242.74  Aligned_cols=220  Identities=17%  Similarity=0.231  Sum_probs=188.7

Q ss_pred             eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      .....+.+|.+.|++++|+|++++|++++.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||+|++||
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  102 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD  102 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            34566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEECCCCee-----------EEEEec-CC--Cee
Q 004207          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSC-----------AGVFKC-QS--GAT  686 (768)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-----g~I~iWDl~sg~~-----------i~~~~~-~~--~i~  686 (768)
                      +++++. +..+. |...|.+++|+|++.. +++++.+     +.|++||++....           +..+.. ..  .+.
T Consensus       103 ~~~~~~-~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (369)
T 3zwl_B          103 VSNGQC-VATWK-SPVPVKRVEFSPCGNY-FLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT  179 (369)
T ss_dssp             TTTCCE-EEEEE-CSSCEEEEEECTTSSE-EEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred             CCCCcE-EEEee-cCCCeEEEEEccCCCE-EEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence            998775 55555 8889999999999874 4566667     9999999976532           222222 22  799


Q ss_pred             EEEEecCCCEEEEEEcCCeEEEEECCC-ceEeeecc-------------------------eeEEeecCCCceEEeccCC
Q 004207          687 QMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQ-------------------------TLELWNMTENKTLTLSAHD  740 (768)
Q Consensus       687 sl~fsp~~~~llags~Dg~I~IwD~~t-~~~~~~~~-------------------------~I~iwd~~~~~~~~l~~H~  740 (768)
                      +++|+|++.++++++.|+.|++||+++ ......+.                         .|++||+.++.......+.
T Consensus       180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  259 (369)
T 3zwl_B          180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETD  259 (369)
T ss_dssp             EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCC
Confidence            999999999999999999999999988 44333221                         7999999998888666688


Q ss_pred             CCeeEEEEeCCCCEEEEEECCC--------------cEEEeC
Q 004207          741 KLVSSLAASTVNGMVASASHDK--------------CVKIWK  768 (768)
Q Consensus       741 ~~I~sla~spdg~~LaSgs~DG--------------~V~IWD  768 (768)
                      ..+.+++|+|++.+|++++.++              .|++||
T Consensus       260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d  301 (369)
T 3zwl_B          260 CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH  301 (369)
T ss_dssp             SCEEEEEECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred             CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence            9999999999999999999998              788885

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.95  E-value=1.6e-25  Score=250.49  Aligned_cols=266  Identities=21%  Similarity=0.343  Sum_probs=215.9

Q ss_pred             cccCCCCCceEEEEecCCCCc------ccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeE
Q 004207          474 LQHNGASSKSLLMFGSDGMGS------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE  547 (768)
Q Consensus       474 l~~s~s~~~~~l~~~~~~~~~------~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~  547 (768)
                      ....++.+..+.+|.......      +......+...+.++++|+.|++|++|+....                   ..
T Consensus       131 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-------------------~~  191 (445)
T 2ovr_B          131 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG-------------------EC  191 (445)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT-------------------EE
T ss_pred             EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC-------------------cE
Confidence            445566777788887654311      11111222223679999999999999965322                   34


Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (768)
Q Consensus       548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~  627 (768)
                      +..+.+|...|.+++|+  +++|++|+.||.|++||+.+++.+..+.+|...|.+++|  ++.+|++|+.||.|++||++
T Consensus       192 ~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~  267 (445)
T 2ovr_B          192 IHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE  267 (445)
T ss_dssp             EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGG
T ss_pred             EEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECC
Confidence            56678999999999995  678999999999999999999999999999999999999  67899999999999999999


Q ss_pred             CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-CCeeEEEEecCCCEEEEEEcCCeE
Q 004207          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYI  706 (768)
Q Consensus       628 t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-~~i~sl~fsp~~~~llags~Dg~I  706 (768)
                      +++. +..+.+|...|.+++|  ++. .+++++.|+.|++||+++++++..+..+ ..+.++.++  +.++++++.|+.|
T Consensus       268 ~~~~-~~~~~~~~~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i  341 (445)
T 2ovr_B          268 TETC-LHTLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTV  341 (445)
T ss_dssp             GTEE-EEEECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCE
T ss_pred             CCcE-eEEecCCCCceEEEEE--CCC-EEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeE
Confidence            8664 7888899999999999  434 6779999999999999999999888753 456666665  5699999999999


Q ss_pred             EEEECCCceEeeecc--------------------------eeEEeecCCCceEE-e-----ccCCCCeeEEEEeCCCCE
Q 004207          707 SILDVETQVCRLKLQ--------------------------TLELWNMTENKTLT-L-----SAHDKLVSSLAASTVNGM  754 (768)
Q Consensus       707 ~IwD~~t~~~~~~~~--------------------------~I~iwd~~~~~~~~-l-----~~H~~~I~sla~spdg~~  754 (768)
                      ++||++++.....+.                          .|++||+.+++.+. +     ..|.+.|++++|+|++.+
T Consensus       342 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  421 (445)
T 2ovr_B          342 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV  421 (445)
T ss_dssp             EEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred             EEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEE
Confidence            999998775543321                          79999999887663 3     378899999999999999


Q ss_pred             EEEEECCCc----EEEeC
Q 004207          755 VASASHDKC----VKIWK  768 (768)
Q Consensus       755 LaSgs~DG~----V~IWD  768 (768)
                      |++|+.||+    |.|||
T Consensus       422 la~~~~dg~~~~~l~v~d  439 (445)
T 2ovr_B          422 CAVGSRNGTEETKLLVLD  439 (445)
T ss_dssp             EEEECSSSSSCCEEEEEE
T ss_pred             EEEcccCCCCccEEEEEE
Confidence            999999998    99986

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=2.9e-26  Score=253.07  Aligned_cols=265  Identities=15%  Similarity=0.188  Sum_probs=207.2

Q ss_pred             cccCCCCCceEEEEecCCC------------CcccccCccccC-CCCEEEeecCCCcEEEeecCCCCCCCCccccccccC
Q 004207          474 LQHNGASSKSLLMFGSDGM------------GSLTSAPNQLTD-MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG  540 (768)
Q Consensus       474 l~~s~s~~~~~l~~~~~~~------------~~~~~~~~~l~~-~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~  540 (768)
                      +...++.+..+.+|.....            +...+....+.+ .+.++++|+.|+.|++|.........          
T Consensus        49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~----------  118 (402)
T 2aq5_A           49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL----------  118 (402)
T ss_dssp             EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS----------
T ss_pred             EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc----------
Confidence            3344566777777775432            222334555666 78899999999999999765542110          


Q ss_pred             CCceeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEe--ccCCCCEEEEEEcCCCCEEEEEeC
Q 004207          541 KGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSA  617 (768)
Q Consensus       541 ~~~~~~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl~t~~~~~tl--~~h~~~V~sl~fspdg~~LaTgs~  617 (768)
                        .....+..+.+|...|++++|+|++ .+|++++.|+.|+|||+.+++.+..+  ..|...|.+++|+|++++|++++.
T Consensus       119 --~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  196 (402)
T 2aq5_A          119 --PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR  196 (402)
T ss_dssp             --CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred             --ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence              0012355677999999999999998 69999999999999999999999999  889999999999999999999999


Q ss_pred             CCcEEEEECCCCCeeEEEe-ecCCCC-eEEEEEeCCCCeEEEEE---eCCCcEEEEECCCCee-E--EEEecCCCeeEEE
Q 004207          618 DRTVRVWDTENPDYSLRTF-TGHSTT-VMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGSC-A--GVFKCQSGATQMR  689 (768)
Q Consensus       618 DgtIrVWDl~t~~~~~~~~-~~h~~~-V~slafsp~g~~lLaSg---s~Dg~I~iWDl~sg~~-i--~~~~~~~~i~sl~  689 (768)
                      |+.|+|||+++++. +..+ .+|.+. +.++.|+|++. +|++|   +.|+.|++||++++.. +  ..+.+...+.+++
T Consensus       197 d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  274 (402)
T 2aq5_A          197 DKRVRVIEPRKGTV-VAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF  274 (402)
T ss_dssp             TSEEEEEETTTTEE-EEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE
T ss_pred             CCcEEEEeCCCCce-eeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEE
Confidence            99999999998765 5555 678766 89999999965 67677   6899999999998654 3  3334567799999


Q ss_pred             EecCCCEEEEEE-cCCeEEEEECCCceE-eeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          690 FQPRLGRILAAA-IENYISILDVETQVC-RLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       690 fsp~~~~llags-~Dg~I~IwD~~t~~~-~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      |+|++.++++++ .|+.|++||+.+... ...              +....|...|.+++|+|++.++++  .|+.+++|
T Consensus       275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~--------------l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~  338 (402)
T 2aq5_A          275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHY--------------LSMFSSKESQRGMGYMPKRGLEVN--KCEIARFY  338 (402)
T ss_dssp             EETTTTEEEEEETTCSCEEEEEECSSTTCEEE--------------EEEECCSSCCSEEEECCGGGSCGG--GTEEEEEE
T ss_pred             EcCCCCEEEEEEcCCCeEEEEEecCCCcceEe--------------ecccccCCcccceEEeccccccee--cceeEEEE
Confidence            999999987665 699999999987542 111              111236789999999999988764  57799999


Q ss_pred             C
Q 004207          768 K  768 (768)
Q Consensus       768 D  768 (768)
                      +
T Consensus       339 ~  339 (402)
T 2aq5_A          339 K  339 (402)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=4.8e-26  Score=240.95  Aligned_cols=204  Identities=17%  Similarity=0.260  Sum_probs=174.7

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEEeccCCCCEEEEEEcC--CCCEEEEEeCCCcEEE
Q 004207          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRV  623 (768)
Q Consensus       550 ~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~----~~~~tl~~h~~~V~sl~fsp--dg~~LaTgs~DgtIrV  623 (768)
                      .+.+|.+.|++++|+|++++|++|+.||.|+|||+.++    +....+.+|...|++++|+|  ++.+|++++.||+|+|
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            45799999999999999999999999999999999876    56778889999999999999  6999999999999999


Q ss_pred             EECCCCC--------eeEEEeecCCCCeEEEEEeCC--CCeEEEEEeCCCcEEEEECCCCeeEEEEe-------------
Q 004207          624 WDTENPD--------YSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK-------------  680 (768)
Q Consensus       624 WDl~t~~--------~~~~~~~~h~~~V~slafsp~--g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-------------  680 (768)
                      ||++++.        ..+..+.+|...|.+++|+|+  +. +|++++.|+.|++||+++++.+..+.             
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9998764        446778889999999999998  65 66688999999999999876543332             


Q ss_pred             -cCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC----
Q 004207          681 -CQSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN----  752 (768)
Q Consensus       681 -~~~~i~sl~fsp~---~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg----  752 (768)
                       +...+.+++|+|+   +..+++++.++.+.+|+........              ...+.+|...|++++|+|++    
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~h~~~i~~~~~~p~~~~~~  230 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV--------------AAKLPGHKSLIRSISWAPSIGRWY  230 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEE--------------EEECCCCCSCEEEEEECCCSSCSS
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceee--------------eeecCCCCcceeEEEECCCCCCcc
Confidence             2456899999997   8899999999999877776653311              22455899999999999998    


Q ss_pred             CEEEEEECCCcEEEeC
Q 004207          753 GMVASASHDKCVKIWK  768 (768)
Q Consensus       753 ~~LaSgs~DG~V~IWD  768 (768)
                      .+|++++.||.|+|||
T Consensus       231 ~~l~s~~~dg~i~iwd  246 (351)
T 3f3f_A          231 QLIATGCKDGRIRIFK  246 (351)
T ss_dssp             EEEEEEETTSCEEEEE
T ss_pred             eEEEEEcCCCeEEEEe
Confidence            8999999999999997

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.5e-26  Score=277.95  Aligned_cols=242  Identities=16%  Similarity=0.209  Sum_probs=200.7

Q ss_pred             CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC--CCEEEEEeCC
Q 004207          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHD  576 (768)
Q Consensus       499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd--g~~LaSgs~D  576 (768)
                      ...+.+.+.++++|+.|+.|++|....                 .....+..+.+|.+.|++++|+++  +.+|++|+.|
T Consensus        14 ~l~~s~dg~~latg~~dg~I~vwd~~~-----------------~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D   76 (753)
T 3jro_A           14 DAVLDYYGKRLATCSSDKTIKIFEVEG-----------------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   76 (753)
T ss_dssp             EECCCSSSCCEEEEETTTEEEEEEEET-----------------TEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT
T ss_pred             EEEECCCCCeEEEEECCCcEEEEecCC-----------------CCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC
Confidence            334455677899999999999995431                 133566788899999999999988  9999999999


Q ss_pred             CcEEEEECCCCe--EEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCC-eeEEEeecCCCCeEEEEEeCC
Q 004207          577 KKAVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPS  651 (768)
Q Consensus       577 g~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVWDl~t~~-~~~~~~~~h~~~V~slafsp~  651 (768)
                      |.|+|||+.+++  .+..+.+|...|++++|+|+  +.+|++|+.||+|++||++++. .....+.+|...|.+++|+|.
T Consensus        77 g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~  156 (753)
T 3jro_A           77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (753)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred             CeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence            999999999887  67788899999999999999  9999999999999999998763 234567789999999999994


Q ss_pred             ------------CCeEEEEEeCCCcEEEEECCCC----eeEEEEec-CCCeeEEEEecC---CCEEEEEEcCCeEEEEEC
Q 004207          652 ------------KEDLLCSCDNNSEIRYWSINNG----SCAGVFKC-QSGATQMRFQPR---LGRILAAAIENYISILDV  711 (768)
Q Consensus       652 ------------g~~lLaSgs~Dg~I~iWDl~sg----~~i~~~~~-~~~i~sl~fsp~---~~~llags~Dg~I~IwD~  711 (768)
                                  ...+|++|+.||.|++||++++    .++..+.. ...|.+++|+|+   +.++++++.|+.|++||+
T Consensus       157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~  236 (753)
T 3jro_A          157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  236 (753)
T ss_dssp             C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred             ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence                        2346779999999999999877    44445543 567999999999   889999999999999999


Q ss_pred             CCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          712 ETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       712 ~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .+.......           .......|...|++++|+|++.+|++++.||.|+|||
T Consensus       237 ~~~~~~~~~-----------~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd  282 (753)
T 3jro_A          237 DNEQGPWKK-----------TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (753)
T ss_dssp             SSSSSCCBC-----------CBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred             CCCCCccee-----------EEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence            875321110           1122346888999999999999999999999999996

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.95  E-value=2.2e-25  Score=249.40  Aligned_cols=233  Identities=22%  Similarity=0.418  Sum_probs=202.0

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      .+.++++|+.|++|++|+....                   ..+..+.+|.+.|.+++|+  +.+|++|+.||+|++||+
T Consensus       128 ~g~~l~sg~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~  186 (445)
T 2ovr_B          128 CGNRIVSGSDDNTLKVWSAVTG-------------------KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNA  186 (445)
T ss_dssp             ETTEEEEEETTSCEEEEETTTC-------------------CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             cCCEEEEEECCCcEEEEECCCC-------------------cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEEC
Confidence            3678999999999999965432                   2456778999999999997  679999999999999999


Q ss_pred             CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc
Q 004207          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (768)
Q Consensus       585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~  664 (768)
                      .+++.+.++.+|...|.+++|+  +.+|++|+.||+|++||+++++. +..+.+|...|.+++|  ++. ++++|+.|+.
T Consensus       187 ~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~  260 (445)
T 2ovr_B          187 ETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC-LHVLMGHVAAVRCVQY--DGR-RVVSGAYDFM  260 (445)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE-EEEEECCSSCEEEEEE--CSS-CEEEEETTSC
T ss_pred             CcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcE-EEEEcCCcccEEEEEE--CCC-EEEEEcCCCE
Confidence            9999999999999999999996  56899999999999999998775 7788899999999999  334 6778999999


Q ss_pred             EEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc----------------------
Q 004207          665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ----------------------  721 (768)
Q Consensus       665 I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~----------------------  721 (768)
                      |++||+++++++..+.. ...+.++.|  ++.++++++.|+.|++||++++.+...+.                      
T Consensus       261 i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d  338 (445)
T 2ovr_B          261 VKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNAD  338 (445)
T ss_dssp             EEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETT
T ss_pred             EEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCC
Confidence            99999999999988874 567888888  67899999999999999998876654432                      


Q ss_pred             -eeEEeecCCCceE-Eecc---CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 -TLELWNMTENKTL-TLSA---HDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 -~I~iwd~~~~~~~-~l~~---H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                       .|++||+.+++.. .+..   |...|++++|+  +.+|++|+.||.|+|||
T Consensus       339 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd  388 (445)
T 2ovr_B          339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD  388 (445)
T ss_dssp             SCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             CeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence             7999999887765 4444   88899999996  68999999999999996

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=6.7e-26  Score=243.17  Aligned_cols=227  Identities=20%  Similarity=0.243  Sum_probs=182.5

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~  585 (768)
                      +.++++|+.|+.|++|......                 ......+.+|.+.|++++|+|++++|++++.||.|+|||+.
T Consensus        54 g~~l~~~~~dg~i~iw~~~~~~-----------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~  116 (368)
T 3mmy_A           54 GNFLIAGSWANDVRCWEVQDSG-----------------QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS  116 (368)
T ss_dssp             SEEEEEEETTSEEEEEEECTTS-----------------CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ceEEEEECCCCcEEEEEcCCCC-----------------ceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC
Confidence            4799999999999999664321                 12235667899999999999999999999999999999999


Q ss_pred             CCeEEEEeccCCCCEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCC-----------------------
Q 004207          586 SFTVKSTLEEHTQWITDVRF--SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-----------------------  640 (768)
Q Consensus       586 t~~~~~tl~~h~~~V~sl~f--spdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~-----------------------  640 (768)
                      +++.+. +..|...|++++|  ++++.+|++++.|++|++||+++++. +..+..+.                       
T Consensus       117 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  194 (368)
T 3mmy_A          117 SNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-MMVLQLPERCYCADVIYPMAVVATAERGLIV  194 (368)
T ss_dssp             TTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-SEEEECSSCEEEEEEETTEEEEEEGGGCEEE
T ss_pred             CCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-EEEEecCCCceEEEecCCeeEEEeCCCcEEE
Confidence            988776 5569999999999  89999999999999999999987654 33333221                       


Q ss_pred             ------------------CCeEEEEEeCCCC---eEEEEEeCCCcEEEEECCCC---eeEEEEecCC-------------
Q 004207          641 ------------------TTVMSLDFHPSKE---DLLCSCDNNSEIRYWSINNG---SCAGVFKCQS-------------  683 (768)
Q Consensus       641 ------------------~~V~slafsp~g~---~lLaSgs~Dg~I~iWDl~sg---~~i~~~~~~~-------------  683 (768)
                                        ..+.++++.++..   ..+++++.|+.|++||++..   ..+..+..+.             
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (368)
T 3mmy_A          195 YQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIY  274 (368)
T ss_dssp             EECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEEC
T ss_pred             EEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccccccc
Confidence                              2344444444322   23778999999999999887   4556666543             


Q ss_pred             CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 004207          684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC  763 (768)
Q Consensus       684 ~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~  763 (768)
                      .|.+++|+|++.+|++++.|+.|++||+.++.+..                .+..|...|++++|+|++.+|++++.|+.
T Consensus       275 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~----------------~~~~~~~~v~~~~~s~~g~~l~~~s~d~~  338 (368)
T 3mmy_A          275 AVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK----------------TSEQLDQPISACCFNHNGNIFAYASSYDW  338 (368)
T ss_dssp             CEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE----------------ECCCCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred             ceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE----------------EecCCCCCceEEEECCCCCeEEEEecccc
Confidence            59999999999999999999999999998876543                33478999999999999999999999986


Q ss_pred             EEEe
Q 004207          764 VKIW  767 (768)
Q Consensus       764 V~IW  767 (768)
                      .+.|
T Consensus       339 ~~~~  342 (368)
T 3mmy_A          339 SKGH  342 (368)
T ss_dssp             TTCG
T ss_pred             cccc
Confidence            5544

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.95  E-value=1.7e-26  Score=246.73  Aligned_cols=233  Identities=13%  Similarity=0.114  Sum_probs=186.0

Q ss_pred             cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEE
Q 004207          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVL  581 (768)
Q Consensus       503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~V  581 (768)
                      .+.+.++++|+.|+.|++|......                .......+.+|...|++++|+|+++ +|++|+.||.|++
T Consensus        20 s~~~~~l~~~~~d~~v~iw~~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A           20 IPSKSLLLITSWDGSLTVYKFDIQA----------------KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EGGGTEEEEEETTSEEEEEEEETTT----------------TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             cCCCCEEEEEcCCCeEEEEEeCCCC----------------ccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            3356789999999999999654321                1122344558999999999999999 9999999999999


Q ss_pred             EEC-CCCeEEEEecc--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CCeeEEEeecCCCCeEEEEEe
Q 004207          582 WCT-ESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFH  649 (768)
Q Consensus       582 Wdl-~t~~~~~tl~~--h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t---------~~~~~~~~~~h~~~V~slafs  649 (768)
                      ||+ .+++. ..+.+  |...|.+++|+| +.+|++++.|+.|++||+++         ++. +..+. |...|.+++|+
T Consensus        84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~~  159 (342)
T 1yfq_A           84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN-SNNTK-VKNKIFTMDTN  159 (342)
T ss_dssp             ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC-SSSSS-SCCCEEEEEEC
T ss_pred             EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCe-eeEEe-eCCceEEEEec
Confidence            999 87765 67788  999999999999 99999999999999999886         442 33444 88999999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCC-CeeE---EEEecCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCCceEeeecceeE
Q 004207          650 PSKEDLLCSCDNNSEIRYWSINN-GSCA---GVFKCQSGATQMRFQP-RLGRILAAAIENYISILDVETQVCRLKLQTLE  724 (768)
Q Consensus       650 p~g~~lLaSgs~Dg~I~iWDl~s-g~~i---~~~~~~~~i~sl~fsp-~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~  724 (768)
                      +++   +++++.|+.|++||+++ +...   ....+...+.+++|+| ++.++++++.|+.|++||++.......     
T Consensus       160 ~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----  231 (342)
T 1yfq_A          160 SSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN-----  231 (342)
T ss_dssp             SSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT-----
T ss_pred             CCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc-----
Confidence            875   67889999999999998 5432   2223466799999999 999999999999999999876510000     


Q ss_pred             EeecCCCceEEecc---------CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          725 LWNMTENKTLTLSA---------HDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       725 iwd~~~~~~~~l~~---------H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                           ......+..         |...|++++|+|++.+|++++.||.|+|||
T Consensus       232 -----~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd  279 (342)
T 1yfq_A          232 -----SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             -----CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             -----cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence                 001112233         455999999999999999999999999997

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.95  E-value=1.5e-25  Score=258.76  Aligned_cols=252  Identities=17%  Similarity=0.259  Sum_probs=209.4

Q ss_pred             ccCccccC--CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 004207          497 SAPNQLTD--MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG  574 (768)
Q Consensus       497 ~~~~~l~~--~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs  574 (768)
                      +....+.+  .+.+|++|+.|+.|++|....+..           ...........+..|...|.+++|+|++++|++++
T Consensus        67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  135 (615)
T 1pgu_A           67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE-----------SNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG  135 (615)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGG-----------GTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcc-----------cccccccccchhhcccccEEEEEEeCCCCEEEEec
Confidence            55666778  889999999999999996532200           00112345667788999999999999999999999


Q ss_pred             CC----CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCeeEEEeecCCC---CeEEE
Q 004207          575 HD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHST---TVMSL  646 (768)
Q Consensus       575 ~D----g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~-~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~---~V~sl  646 (768)
                      .|    +.|++||  +++.+..+.+|...|++++|+|++. +|++++.|++|++||+.+++. +..+.+|..   .|.++
T Consensus       136 ~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~v~~~  212 (615)
T 1pgu_A          136 EGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF-SASDRTHHKQGSFVRDV  212 (615)
T ss_dssp             CCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE-EEEECSSSCTTCCEEEE
T ss_pred             cCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce-eeeecccCCCCceEEEE
Confidence            88    6888888  6678889999999999999999987 899999999999999987664 778888998   99999


Q ss_pred             EEeCC-CCeEEEEEeCCCcEEEEECCCCeeEEEE-----ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeec
Q 004207          647 DFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVF-----KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL  720 (768)
Q Consensus       647 afsp~-g~~lLaSgs~Dg~I~iWDl~sg~~i~~~-----~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~  720 (768)
                      +|+|+ +. +|++++.|+.|++||+++++.+..+     .+...|.+++|+ ++.++++++.|+.|++||+++......+
T Consensus       213 ~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~  290 (615)
T 1pgu_A          213 EFSPDSGE-FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKW  290 (615)
T ss_dssp             EECSTTCC-EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EECCCCCC-EEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence            99999 66 6668899999999999999999988     567789999999 9999999999999999999877654322


Q ss_pred             ----------------------------ceeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          721 ----------------------------QTLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       721 ----------------------------~~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                                  ..+++||+..++.. .+.+|...|++++| |+   |++++.||.|++||
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~  363 (615)
T 1pgu_A          291 TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWS  363 (615)
T ss_dssp             ECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETT
T ss_pred             cCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEE
Confidence                                        16889998876554 56688888888888 76   77777778877775

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.95  E-value=4.5e-26  Score=270.59  Aligned_cols=205  Identities=22%  Similarity=0.361  Sum_probs=176.6

Q ss_pred             eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC-----CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004207          546 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (768)
Q Consensus       546 ~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl~t-----~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg  619 (768)
                      .....+++|.+.|+||+|++++ ++|++|+.|++|+|||+.+     +.....+.+|...|.+++|+|++++|++|+.|+
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg  452 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG  452 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            4455688999999999999864 7999999999999999875     345678899999999999999999999999999


Q ss_pred             cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----cCCCeeEEEEecCC-
Q 004207          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRL-  694 (768)
Q Consensus       620 tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~----~~~~i~sl~fsp~~-  694 (768)
                      +|+|||+.++.. +..+.+|...|.+++|+|++. +|++|+.|++|++||+..........    +...|.+++|+|++ 
T Consensus       453 ~v~vwd~~~~~~-~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  530 (694)
T 3dm0_A          453 ELRLWDLAAGVS-TRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL  530 (694)
T ss_dssp             EEEEEETTTTEE-EEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred             cEEEEECCCCcc-eeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence            999999998764 788899999999999999987 55699999999999987554333322    24559999999986 


Q ss_pred             -CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          695 -GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       695 -~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                       ..+++++.|+.|++||+++..+..                .+.+|.+.|++++|+|++.+|++|+.||+|+|||
T Consensus       531 ~~~l~s~s~d~~v~vwd~~~~~~~~----------------~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd  589 (694)
T 3dm0_A          531 QPTIVSASWDKTVKVWNLSNCKLRS----------------TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD  589 (694)
T ss_dssp             SCEEEEEETTSCEEEEETTTCCEEE----------------EECCCSSCEEEEEECTTSSEEEEEETTSBCEEEE
T ss_pred             cceEEEEeCCCeEEEEECCCCcEEE----------------EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence             579999999999999998765432                4458999999999999999999999999999997

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.95  E-value=3e-26  Score=246.09  Aligned_cols=218  Identities=13%  Similarity=0.225  Sum_probs=185.1

Q ss_pred             EecCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCeEEEEecc-----CCCCEEEEEEcCC----CCEEEEEe
Q 004207          550 LIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPS----LSRLATSS  616 (768)
Q Consensus       550 ~l~~H~~~I~sl~fSpd----g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~-----h~~~V~sl~fspd----g~~LaTgs  616 (768)
                      ...+|.++|++++|+|+    ...+++++.++.|+|||+.+++.+..+..     |...|++++|+|+    +.+|++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            34589999999999984    44666667777999999998877666643     5578999999998    67999999


Q ss_pred             CCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEE----ecCCCeeEEEEec
Q 004207          617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQSGATQMRFQP  692 (768)
Q Consensus       617 ~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~----~~~~~i~sl~fsp  692 (768)
                      .||+|+|||+.+++. +..+.+|...|.+++|+|++..+|++|+.||.|++||+++++.+..+    .+...|.+++|+|
T Consensus        93 ~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  171 (366)
T 3k26_A           93 SRGIIRIINPITMQC-IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL  171 (366)
T ss_dssp             TTCEEEEECTTTCCE-EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred             CCCEEEEEEchhceE-eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence            999999999998775 77888999999999999944457789999999999999999999887    3567899999999


Q ss_pred             CCCEEEEEEcCCeEEEEECCCceEee---------------------------------------------------ecc
Q 004207          693 RLGRILAAAIENYISILDVETQVCRL---------------------------------------------------KLQ  721 (768)
Q Consensus       693 ~~~~llags~Dg~I~IwD~~t~~~~~---------------------------------------------------~~~  721 (768)
                      ++.+|++++.|+.|++||+++.....                                                   ...
T Consensus       172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~  251 (366)
T 3k26_A          172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCEN  251 (366)
T ss_dssp             TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSS
T ss_pred             CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCC
Confidence            99999999999999999998653221                                                   122


Q ss_pred             eeEEeecCCCc---------------eEEeccCCCCeeEEEEeCC--CCEEEEEECCCcEEEeC
Q 004207          722 TLELWNMTENK---------------TLTLSAHDKLVSSLAASTV--NGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 ~I~iwd~~~~~---------------~~~l~~H~~~I~sla~spd--g~~LaSgs~DG~V~IWD  768 (768)
                      .|++||+....               ...+..|...|++++|+|+  +.+|++++.||.|+|||
T Consensus       252 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd  315 (366)
T 3k26_A          252 AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWD  315 (366)
T ss_dssp             EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEE
T ss_pred             EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEE
Confidence            78999987753               3356789999999999999  99999999999999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.95  E-value=2.3e-25  Score=237.40  Aligned_cols=207  Identities=18%  Similarity=0.321  Sum_probs=175.3

Q ss_pred             eeeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-----eEEEEeccCCCCEEEEEEcCCCCEEEEEeC
Q 004207          544 TFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSPSLSRLATSSA  617 (768)
Q Consensus       544 ~~~~~~~l~~H~~~I~sl~fSpd-g~~LaSgs~Dg~I~VWdl~t~-----~~~~tl~~h~~~V~sl~fspdg~~LaTgs~  617 (768)
                      .+....++++|.+.|+||+|+|+ +++||||+.|++|+|||+.+.     .+..++.+|...|.+++|+|++++|++++.
T Consensus        27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~  106 (340)
T 4aow_A           27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW  106 (340)
T ss_dssp             EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence            34556678999999999999997 689999999999999998764     356788999999999999999999999999


Q ss_pred             CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeeEEEEecCC-
Q 004207          618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRL-  694 (768)
Q Consensus       618 DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~--~~~~i~sl~fsp~~-  694 (768)
                      |+.|++|+...... ......+...+..+.+++++. +|++++.|+.+++||+..........  +...+..++|+++. 
T Consensus       107 d~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  184 (340)
T 4aow_A          107 DGTLRLWDLTTGTT-TRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS  184 (340)
T ss_dssp             TSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred             cccceEEeecccce-eeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence            99999999987664 666667888899999999876 56689999999999998665443322  25668889998764 


Q ss_pred             -CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          695 -GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       695 -~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                       ..+++++.|+.|++||+++.....                .+.+|.+.|++++|+|++.+|++|+.||.|+|||
T Consensus       185 ~~~~~s~~~d~~i~i~d~~~~~~~~----------------~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd  243 (340)
T 4aow_A          185 NPIIVSCGWDKLVKVWNLANCKLKT----------------NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD  243 (340)
T ss_dssp             SCEEEEEETTSCEEEEETTTTEEEE----------------EECCCSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             CcEEEEEcCCCEEEEEECCCCceee----------------EecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence             457788999999999998876533                3458999999999999999999999999999996

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.95  E-value=8.6e-26  Score=243.81  Aligned_cols=216  Identities=14%  Similarity=0.187  Sum_probs=183.8

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (768)
Q Consensus       551 l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t  628 (768)
                      +..|.++|++++|+|++++|++++.|+.|+|||+.+++  .+..+.+|...|.+++|+|++++|++++.|++|++||+++
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            34689999999999999999999999999999999987  8888999999999999999999999999999999999987


Q ss_pred             CCee-EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee---EEEEe--cCCCeeEEEEecCCCEEEEEEc
Q 004207          629 PDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK--CQSGATQMRFQPRLGRILAAAI  702 (768)
Q Consensus       629 ~~~~-~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~---i~~~~--~~~~i~sl~fsp~~~~llags~  702 (768)
                      ++.. ...+..|...|.+++|+|++. +|++++.|+.|++||++.+..   ...+.  +...|.+++|+|++.++++++.
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  162 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  162 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence            6532 334467899999999999976 666888999999999988763   33332  2567999999999999999999


Q ss_pred             CCeEEEEECC------------------CceEeeecc-------------------------eeEEeecCCCceE-Eecc
Q 004207          703 ENYISILDVE------------------TQVCRLKLQ-------------------------TLELWNMTENKTL-TLSA  738 (768)
Q Consensus       703 Dg~I~IwD~~------------------t~~~~~~~~-------------------------~I~iwd~~~~~~~-~l~~  738 (768)
                      |+.|++||++                  .......+.                         .|++||+.+++.+ .+..
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  242 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS  242 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence            9999999953                  333322221                         7999999877655 6778


Q ss_pred             CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          739 HDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       739 H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |...|.+++|+|++.+|+++ .||.|+|||
T Consensus       243 ~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~  271 (372)
T 1k8k_C          243 ETLPLLAVTFITESSLVAAG-HDCFPVLFT  271 (372)
T ss_dssp             SSCCEEEEEEEETTEEEEEE-TTSSCEEEE
T ss_pred             CCCCeEEEEEecCCCEEEEE-eCCeEEEEE
Confidence            99999999999999988877 999999996

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.95  E-value=7.1e-25  Score=245.84  Aligned_cols=267  Identities=17%  Similarity=0.220  Sum_probs=214.1

Q ss_pred             cccCCCCCceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCcee
Q 004207          474 LQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF  545 (768)
Q Consensus       474 l~~s~s~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~  545 (768)
                      ....++.+..+.+|.....        +...+....+.+.+ ++++|+.|++|++|+....                   
T Consensus       134 ~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~-------------------  193 (464)
T 3v7d_B          134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG-------------------  193 (464)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT-------------------
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC-------------------
Confidence            5566777888888876543        22233344444433 9999999999999965322                   


Q ss_pred             eEEEEecCCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEECCCCe-----------------------EEEEeccCCCCE
Q 004207          546 TEFQLIPASTSKVESCHFS--PDGKLLATGGHDKKAVLWCTESFT-----------------------VKSTLEEHTQWI  600 (768)
Q Consensus       546 ~~~~~l~~H~~~I~sl~fS--pdg~~LaSgs~Dg~I~VWdl~t~~-----------------------~~~tl~~h~~~V  600 (768)
                      ..+..+.+|.+.|.+++|+  +++.+|++|+.|+.|++||+.+..                       .+..+.+|...|
T Consensus       194 ~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  273 (464)
T 3v7d_B          194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV  273 (464)
T ss_dssp             EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE
T ss_pred             cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE
Confidence            3456778999999999998  578899999999999999998765                       255678899888


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe
Q 004207          601 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (768)
Q Consensus       601 ~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~  680 (768)
                      .++  ++++.+|++++.|++|++||+++++. +..+.+|...|.+++|+|++. ++++|+.|+.|++||+++++++..+.
T Consensus       274 ~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~  349 (464)
T 3v7d_B          274 RTV--SGHGNIVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMYTLQ  349 (464)
T ss_dssp             EEE--EEETTEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEE--cCCCCEEEEEeCCCeEEEEECCCCcE-EEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEe
Confidence            887  45688999999999999999998664 788889999999999999977 56689999999999999999999887


Q ss_pred             c-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-----------------------eeEEeecCCCceEE-
Q 004207          681 C-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-----------------------TLELWNMTENKTLT-  735 (768)
Q Consensus       681 ~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-----------------------~I~iwd~~~~~~~~-  735 (768)
                      . ...|.+++|++  .++++++.|+.|++||+.+........                       .|++||+.+++.+. 
T Consensus       350 ~h~~~v~~~~~~~--~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          350 GHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             CCSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEES
T ss_pred             CCCCcEEEEEEcC--CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEeh
Confidence            5 56688899984  699999999999999998765433321                       89999999998875 


Q ss_pred             -eccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          736 -LSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       736 -l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                       +..|...|.+++|+ ...++++++.||.+.+|
T Consensus       428 ~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          428 NILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             CTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             hhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence             56889999999998 34556666677766654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.95  E-value=8e-27  Score=261.29  Aligned_cols=203  Identities=15%  Similarity=0.167  Sum_probs=165.5

Q ss_pred             EecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeE--EEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004207          550 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD  625 (768)
Q Consensus       550 ~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~~~--~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWD  625 (768)
                      ...+|...|+||+|+| ++.+||+|+.||.|+|||+.+++.  ...+.+|.+.|++|+|+| ++.+|++|+.||+|+|||
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            4457889999999999 567999999999999999987654  345568999999999998 688999999999999999


Q ss_pred             CCCCCeeEEEee--cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCC-EEEEEE
Q 004207          626 TENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG-RILAAA  701 (768)
Q Consensus       626 l~t~~~~~~~~~--~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~-~llags  701 (768)
                      +++... .....  .+...+.+++|+|++. +|++|+.||.|++||++. +.+..+. +...|.+++|+|++. ++++++
T Consensus       194 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s  270 (435)
T 4e54_B          194 FKGNIL-RVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATAS  270 (435)
T ss_dssp             TTSCEE-EEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred             ccCCce-eEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEec
Confidence            986442 22222  2345678999999976 677999999999999975 4444444 356799999999887 566788


Q ss_pred             cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          702 IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       702 ~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .|+.|+|||+++......             .....+|...|++++|+|++.+|++++.||.|+|||
T Consensus       271 ~d~~v~iwd~~~~~~~~~-------------~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd  324 (435)
T 4e54_B          271 VDQTVKIWDLRQVRGKAS-------------FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS  324 (435)
T ss_dssp             TTSBCCEEETTTCCSSSC-------------CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEE
T ss_pred             CcceeeEEecccccccce-------------EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEE
Confidence            999999999987543221             123347999999999999999999999999999996

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2e-26  Score=256.43  Aligned_cols=256  Identities=11%  Similarity=0.145  Sum_probs=192.6

Q ss_pred             cccCccccC-CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 004207          496 TSAPNQLTD-MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG  574 (768)
Q Consensus       496 ~~~~~~l~~-~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs  574 (768)
                      .+....+.+ .+.++++|+.|++|++|.......             +..+.....+ .|.+.|++++|+|++.+|++|+
T Consensus        65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~-------------~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s  130 (437)
T 3gre_A           65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV-------------GEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSS  130 (437)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT-------------TCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEECCCCCCEEEEecCCceEEEeECccccc-------------Ccccceeeec-cCCCCEEEEEEeCCCCEEEEEe
Confidence            444455556 678999999999999996533100             1011111222 5899999999999999999999


Q ss_pred             CCCcEEEEECC---CCeEEEEecc------------CCCCEEEEE--EcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee
Q 004207          575 HDKKAVLWCTE---SFTVKSTLEE------------HTQWITDVR--FSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (768)
Q Consensus       575 ~Dg~I~VWdl~---t~~~~~tl~~------------h~~~V~sl~--fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~  637 (768)
                      .||.|+|||++   +++.+..+..            +...+.++.  +++++.+|++++.|++|++||+++++. +..+.
T Consensus       131 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~  209 (437)
T 3gre_A          131 KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER-LQIIE  209 (437)
T ss_dssp             TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE-EEEEE
T ss_pred             CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee-eEEEc
Confidence            99999999984   4444433322            455677777  567899999999999999999998775 67777


Q ss_pred             c--CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeeEEEEec----CCCEEEEEEcCCeEEEE
Q 004207          638 G--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQP----RLGRILAAAIENYISIL  709 (768)
Q Consensus       638 ~--h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~--~~~~i~sl~fsp----~~~~llags~Dg~I~Iw  709 (768)
                      +  |...|++++|+|++. +|++|+.||.|++||+++++++..+.  +...|.+++|+|    ++.+|++++.|+.|++|
T Consensus       210 ~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw  288 (437)
T 3gre_A          210 NSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIW  288 (437)
T ss_dssp             CCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred             cCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence            6  889999999999966 67799999999999999999998875  355689996665    56689999999999999


Q ss_pred             ECCCceEeeeccee----E--EeecCCCc--eEEecc--CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          710 DVETQVCRLKLQTL----E--LWNMTENK--TLTLSA--HDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       710 D~~t~~~~~~~~~I----~--iwd~~~~~--~~~l~~--H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |++++.+...+...    .  .|......  ...+.+  |...|++++|+ ++.+|++|+.||.|+|||
T Consensus       289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd  356 (437)
T 3gre_A          289 NFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFS  356 (437)
T ss_dssp             ETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEE
T ss_pred             EcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEE
Confidence            99988765443200    0  01100000  002233  88899999999 778999999999999997

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5e-25  Score=231.62  Aligned_cols=218  Identities=16%  Similarity=0.248  Sum_probs=187.3

Q ss_pred             eeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 004207          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  623 (768)
Q Consensus       544 ~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrV  623 (768)
                      .+.....+.+|.+.|++++| +++.+|++++.||.|+|||+.+++....+..|...|.+++|+|++.+|++++.|+.|++
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~   85 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING   85 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence            34667888999999999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCC--eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEec-CCCEEEE
Q 004207          624 WDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQP-RLGRILA  699 (768)
Q Consensus       624 WDl~t~~--~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp-~~~~lla  699 (768)
                      |++....  ..+..+.+|...|.+++|+  +. ++++++.|+.|++||  .+..+..+.. ...+.+++|.| ++.++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  160 (313)
T 3odt_A           86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ--DG-VVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT  160 (313)
T ss_dssp             EETTCCTTSCC-CEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred             EEeeecCCCCcccchhhcccCEEEEEec--CC-EEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence            9997643  3467788899999999995  33 777999999999999  5666666664 66789999988 8899999


Q ss_pred             EEcCCeEEEEECCCceEeeec-----------------------ceeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEE
Q 004207          700 AAIENYISILDVETQVCRLKL-----------------------QTLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMV  755 (768)
Q Consensus       700 gs~Dg~I~IwD~~t~~~~~~~-----------------------~~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~L  755 (768)
                      ++.|+.|++||..........                       ..|++||+.+++.+ .+..|...|++++|+|++ .|
T Consensus       161 ~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l  239 (313)
T 3odt_A          161 ASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DI  239 (313)
T ss_dssp             EETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CE
T ss_pred             EECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CE
Confidence            999999999996543222211                       17999999887765 567899999999999999 68


Q ss_pred             EEEECCCcEEEeC
Q 004207          756 ASASHDKCVKIWK  768 (768)
Q Consensus       756 aSgs~DG~V~IWD  768 (768)
                      ++++.||.|+|||
T Consensus       240 ~~~~~dg~v~iwd  252 (313)
T 3odt_A          240 VSCGEDRTVRIWS  252 (313)
T ss_dssp             EEEETTSEEEEEC
T ss_pred             EEEecCCEEEEEE
Confidence            9999999999997

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.94  E-value=1.7e-25  Score=281.68  Aligned_cols=275  Identities=22%  Similarity=0.324  Sum_probs=227.4

Q ss_pred             cccCCCCCceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCcee
Q 004207          474 LQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF  545 (768)
Q Consensus       474 l~~s~s~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~  545 (768)
                      +..+++.+..+.+|.....        +...+....+.+.+.++++|+.|+.|++|+...+                   
T Consensus       629 ~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-------------------  689 (1249)
T 3sfz_A          629 RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG-------------------  689 (1249)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-------------------
T ss_pred             EEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC-------------------
Confidence            4455667778888876543        2334456677888999999999999999965432                   


Q ss_pred             eEEEEecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 004207          546 TEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  623 (768)
Q Consensus       546 ~~~~~l~~H~~~I~sl~fSp--dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrV  623 (768)
                      ..+..+.+|...|.+++|+|  ++.++++|+.|+.|++||+.+++++.++.+|...|++++|+|++++|++++.||+|++
T Consensus       690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~v  769 (1249)
T 3sfz_A          690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL  769 (1249)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEE
T ss_pred             ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEE
Confidence            24566789999999999999  5568999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCeeE------------------------------------------------------EEeecCCCCeEEEEEe
Q 004207          624 WDTENPDYSL------------------------------------------------------RTFTGHSTTVMSLDFH  649 (768)
Q Consensus       624 WDl~t~~~~~------------------------------------------------------~~~~~h~~~V~slafs  649 (768)
                      ||+.++....                                                      ....+|...|.+++|+
T Consensus       770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s  849 (1249)
T 3sfz_A          770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS  849 (1249)
T ss_dssp             EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC
T ss_pred             EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc
Confidence            9987543210                                                      1122688899999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceE------------
Q 004207          650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVC------------  716 (768)
Q Consensus       650 p~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~------------  716 (768)
                      |++. ++++++.|+.|++||+.++..+..+.. ...|.+++|+|++.++++++.|+.|++||+.+...            
T Consensus       850 p~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~  928 (1249)
T 3sfz_A          850 PYDH-LAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV  928 (1249)
T ss_dssp             SSTT-EEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEE
T ss_pred             CCCC-EEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeE
Confidence            9977 666888999999999999999888875 45699999999999999999999999999653100            


Q ss_pred             --------------------------------------------------eeecceeEEeecCCCceE-EeccCCCCeeE
Q 004207          717 --------------------------------------------------RLKLQTLELWNMTENKTL-TLSAHDKLVSS  745 (768)
Q Consensus       717 --------------------------------------------------~~~~~~I~iwd~~~~~~~-~l~~H~~~I~s  745 (768)
                                                                        ......+.+|++.++... .+.+|...|++
T Consensus       929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~ 1008 (1249)
T 3sfz_A          929 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008 (1249)
T ss_dssp             EEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCC
T ss_pred             EEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEE
Confidence                                                              001126889998887665 56689999999


Q ss_pred             EEEeCCCCEEEEEECCCcEEEeC
Q 004207          746 LAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       746 la~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ++|+|++.+|++++.||.|++||
T Consensus      1009 l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A         1009 IQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp             EEECSSSSCEEEECSSSBEEEEE
T ss_pred             EEECCCCCEEEEEcCCCEEEEEE
Confidence            99999999999999999999996

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.94  E-value=1.9e-25  Score=248.08  Aligned_cols=267  Identities=13%  Similarity=0.171  Sum_probs=189.0

Q ss_pred             ccCccccCCC--CEEEeecCCCcEEEeecCCCCCC------CCccc------cc--------cccCCCceeeEEEE-ecC
Q 004207          497 SAPNQLTDMD--RFVDDGSLDDNVESFLSPDDADP------RDRVG------RS--------AEVGKGFTFTEFQL-IPA  553 (768)
Q Consensus       497 ~~~~~l~~~~--~~latGS~D~~v~~w~~~~~~d~------~~~~~------~~--------~~~~~~~~~~~~~~-l~~  553 (768)
                      +....+.+.+  ..+++++.|++|++|........      ....+      ..        .............. ..+
T Consensus        96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (447)
T 3dw8_B           96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA  175 (447)
T ss_dssp             CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred             eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence            4445555665  78999999999999965432100      00000      00        00000001112223 478


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEE-------EeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEE
Q 004207          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKS-------TLEEHTQWITDVRFSPSL-SRLATSSADRTVRVW  624 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t-~~~~~-------tl~~h~~~V~sl~fspdg-~~LaTgs~DgtIrVW  624 (768)
                      |...|++++|+|++++|++| .|+.|+|||+.+ .+.+.       .+.+|...|++++|+|++ .+|++|+.||+|++|
T Consensus       176 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  254 (447)
T 3dw8_B          176 HTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC  254 (447)
T ss_dssp             CSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             CCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence            99999999999999999998 799999999984 44444       256899999999999998 999999999999999


Q ss_pred             ECCCCCee---EEEeecCCC------------CeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-CeeEEEEecCCCe---
Q 004207          625 DTENPDYS---LRTFTGHST------------TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGA---  685 (768)
Q Consensus       625 Dl~t~~~~---~~~~~~h~~------------~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~~~~~i---  685 (768)
                      |++++...   +..+.+|..            .|.+++|+|++. +|++++. +.|++||+++ ++++..+..+..+   
T Consensus       255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~  332 (447)
T 3dw8_B          255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSK  332 (447)
T ss_dssp             ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTT
T ss_pred             ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCCccccceeecccccccc
Confidence            99987642   467777775            899999999987 5557777 9999999997 8888888765432   


Q ss_pred             -------------eEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc--------------eeEEeecCCCceE--Ee
Q 004207          686 -------------TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------------TLELWNMTENKTL--TL  736 (768)
Q Consensus       686 -------------~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~--------------~I~iwd~~~~~~~--~l  736 (768)
                                   ..++|+|++.+|++++.|+.|++||+.++.......              .+..-........  ..
T Consensus       333 l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (447)
T 3dw8_B          333 LCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDS  412 (447)
T ss_dssp             HHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGG
T ss_pred             ccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccc
Confidence                         339999999999999999999999999876542110              0000000000000  11


Q ss_pred             ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          737 SAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       737 ~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      ..+...|.+++|+|++.+||+++.|+ ++||
T Consensus       413 ~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~  442 (447)
T 3dw8_B          413 LDFNKKILHTAWHPKENIIAVATTNN-LYIF  442 (447)
T ss_dssp             CCTTSCCCEEEECSSSSEEEEECSSC-EEEE
T ss_pred             cccCCceeEEEECCCCCEEEEEecce-eeee
Confidence            24566799999999999999998886 5565

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.94  E-value=2.8e-25  Score=242.79  Aligned_cols=208  Identities=15%  Similarity=0.250  Sum_probs=176.7

Q ss_pred             eeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEec--cCCCCEEEEEEcC-CCCEEEEEeCCC
Q 004207          544 TFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSP-SLSRLATSSADR  619 (768)
Q Consensus       544 ~~~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl~t~~~~~tl~--~h~~~V~sl~fsp-dg~~LaTgs~Dg  619 (768)
                      .+..+..+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.+++....+.  +|...|.+++|+| ++.+|++++.|+
T Consensus        62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            345677889999999999999999 899999999999999999888777765  6999999999999 689999999999


Q ss_pred             cEEEEECCCCCeeEEEeec---CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCC
Q 004207          620 TVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG  695 (768)
Q Consensus       620 tIrVWDl~t~~~~~~~~~~---h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~  695 (768)
                      +|++||+++ . .+..+..   |...|.+++|+|++. +|++|+.|+.|++||++ ++++..+. +...|.+++|+|++.
T Consensus       142 ~i~iwd~~~-~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~  217 (383)
T 3ei3_B          142 ATTLRDFSG-S-VIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCD  217 (383)
T ss_dssp             EEEEEETTS-C-EEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCT
T ss_pred             EEEEEECCC-C-ceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCC
Confidence            999999986 3 2445544   347899999999977 66799999999999995 66666666 467799999999998


Q ss_pred             -EEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeC-CCCEEEEEECCCcEEEeC
Q 004207          696 -RILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK  768 (768)
Q Consensus       696 -~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~sp-dg~~LaSgs~DG~V~IWD  768 (768)
                       .+++++.|+.|++||+++....             +......+|...|++++|+| ++.+|++++.||.|+|||
T Consensus       218 ~~l~s~~~d~~i~iwd~~~~~~~-------------~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd  279 (383)
T 3ei3_B          218 WLMATSSVDATVKLWDLRNIKDK-------------NSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYS  279 (383)
T ss_dssp             TEEEEEETTSEEEEEEGGGCCST-------------TCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEE
T ss_pred             CEEEEEeCCCEEEEEeCCCCCcc-------------cceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEE
Confidence             8999999999999999873211             12222336899999999999 999999999999999996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.94  E-value=3.3e-25  Score=255.82  Aligned_cols=236  Identities=14%  Similarity=0.184  Sum_probs=201.3

Q ss_pred             ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCC-eEEEEEcC--CCCEEEEE
Q 004207          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-VESCHFSP--DGKLLATG  573 (768)
Q Consensus       497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~-I~sl~fSp--dg~~LaSg  573 (768)
                      +....+.+.++++++++ |+.|++|......               ........+.+|.+. |++++|+|  ++++|+++
T Consensus        21 v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~---------------~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~   84 (615)
T 1pgu_A           21 TTHLSYDPTTNAIAYPC-GKSAFVRCLDDGD---------------SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG   84 (615)
T ss_dssp             CCCCEEETTTTEEEEEE-TTEEEEEECCSSC---------------CSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEE
T ss_pred             eeEEEECCCCCEEEEec-CCeEEEEECCCCC---------------CccccceEEecCCCceEEEEEECcCCCCCEEEEe
Confidence            34455566778889888 8899999654321               011245677899999 99999999  99999999


Q ss_pred             eCCCcEEEEECCCC--------eEEEEeccCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCCeeEEEeecCCC
Q 004207          574 GHDKKAVLWCTESF--------TVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRTFTGHST  641 (768)
Q Consensus       574 s~Dg~I~VWdl~t~--------~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D----gtIrVWDl~t~~~~~~~~~~h~~  641 (768)
                      +.||.|+|||+.++        +.+..+..|...|.+++|+|++++|++++.+    +.|++||.  ++ .+..+.+|..
T Consensus        85 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~-~~~~~~~~~~  161 (615)
T 1pgu_A           85 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GN-SLGEVSGHSQ  161 (615)
T ss_dssp             ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CC-EEEECCSCSS
T ss_pred             cCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CC-cceeeecCCc
Confidence            99999999999754        6777888899999999999999999999988    68888883  33 4788889999


Q ss_pred             CeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-C---CeeEEEEecC-CCEEEEEEcCCeEEEEECCCceE
Q 004207          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-S---GATQMRFQPR-LGRILAAAIENYISILDVETQVC  716 (768)
Q Consensus       642 ~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-~---~i~sl~fsp~-~~~llags~Dg~I~IwD~~t~~~  716 (768)
                      .|.+++|+|++..++++++.|+.|++||+++++++..+..+ .   .|.+++|+|+ +.++++++.|+.|++||+.++..
T Consensus       162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  241 (615)
T 1pgu_A          162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF  241 (615)
T ss_dssp             CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE
T ss_pred             cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE
Confidence            99999999998878889999999999999999999988854 4   6999999999 99999999999999999987655


Q ss_pred             eeecceeEEeecCCCceEEe-c---cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          717 RLKLQTLELWNMTENKTLTL-S---AHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       717 ~~~~~~I~iwd~~~~~~~~l-~---~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ..                .+ .   .|...|.+++|+ ++.+|++++.||.|++||
T Consensus       242 ~~----------------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd  280 (615)
T 1pgu_A          242 LK----------------YIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWD  280 (615)
T ss_dssp             EE----------------ECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEE
T ss_pred             eE----------------EecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEE
Confidence            32                22 2   788999999999 999999999999999996

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=1.8e-26  Score=255.59  Aligned_cols=232  Identities=10%  Similarity=0.063  Sum_probs=170.4

Q ss_pred             ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC--------CCCEEEEE
Q 004207          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--------DGKLLATG  573 (768)
Q Consensus       502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp--------dg~~LaSg  573 (768)
                      ......++++|+.|++|++|+.....              ......+..+.+|.+.|.+|+|+|        |+++||+|
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~--------------~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~  162 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNET--------------IITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASV  162 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTE--------------EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEE
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCc--------------cceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEE
Confidence            34456789999999999999654321              122234556789999999999998        88999999


Q ss_pred             eCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCeeE-------------------
Q 004207          574 GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSL-------------------  633 (768)
Q Consensus       574 s~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg-~~LaTgs~DgtIrVWDl~t~~~~~-------------------  633 (768)
                      +.|++|+|||+.++..+..+..|...|.+++|+|++ .+|++++.|++|++||++++....                   
T Consensus       163 s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~  242 (393)
T 4gq1_A          163 GDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL  242 (393)
T ss_dssp             ETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESG
T ss_pred             ECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc
Confidence            999999999999888888888899999999999986 589999999999999998765321                   


Q ss_pred             -----EEeecCCCCeEEEEEe-CCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-------------------CCCeeEE
Q 004207          634 -----RTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------------------QSGATQM  688 (768)
Q Consensus       634 -----~~~~~h~~~V~slafs-p~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-------------------~~~i~sl  688 (768)
                           ....+|...|.++.|. +++. .+++++.|+.|++||+..+.....+..                   ......+
T Consensus       243 ~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (393)
T 4gq1_A          243 PLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGA  321 (393)
T ss_dssp             GGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCC
T ss_pred             cceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeE
Confidence                 1224678889999997 5655 666999999999999987665444321                   1112223


Q ss_pred             EEec-CCCE-EEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 004207          689 RFQP-RLGR-ILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCV  764 (768)
Q Consensus       689 ~fsp-~~~~-llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V  764 (768)
                      .|+| .++. +++++.|+.|++||+.++....                .+..|...|.+|+|+|+|++||+++.||.+
T Consensus       322 ~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~----------------~~~~~~~~V~svafspdG~~LA~as~~Gv~  383 (393)
T 4gq1_A          322 CPHPRYMDYFATAHSQHGLIQLINTYEKDSNS----------------IPIQLGMPIVDFCWHQDGSHLAIATEGSVL  383 (393)
T ss_dssp             EECSSCTTEEEEEETTTTEEEEEETTCTTCCE----------------EEEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred             EEccCCCCEEEEEECCCCEEEEEECCCCcEEE----------------EecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            4444 3344 4455679999999988765422                334688899999999999999999988864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.4e-25  Score=240.88  Aligned_cols=214  Identities=16%  Similarity=0.227  Sum_probs=178.0

Q ss_pred             cCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEC----CCCe------EEEEecc----------CCCCEEEEEEcCCCC
Q 004207          552 PASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT----ESFT------VKSTLEE----------HTQWITDVRFSPSLS  610 (768)
Q Consensus       552 ~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl----~t~~------~~~tl~~----------h~~~V~sl~fspdg~  610 (768)
                      ..|.+.|++++|+|++. +||+|+.||.|+|||+    .+++      ....+..          |...|++++|+|+++
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            45678999999999999 9999999999999999    8887      4555544          677999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----------
Q 004207          611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----------  680 (768)
Q Consensus       611 ~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~----------  680 (768)
                      +|++++.||.|++||. ++. .+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+.          
T Consensus       122 ~l~~~~~dg~i~i~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  198 (425)
T 1r5m_A          122 SIVTGVENGELRLWNK-TGA-LLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQHFELKETGGSSIN  198 (425)
T ss_dssp             EEEEEETTSCEEEEET-TSC-EEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred             EEEEEeCCCeEEEEeC-CCC-eeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence            9999999999999993 334 4778889999999999999977 55688889999999998876654332          


Q ss_pred             -----------------------------------------------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207          681 -----------------------------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       681 -----------------------------------------------~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                                                                     +...|.+++|+|++.+|++++.|+.|++||+++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  278 (425)
T 1r5m_A          199 AENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN  278 (425)
T ss_dssp             -------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS
T ss_pred             eccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence                                                           134578899999999999999999999999987


Q ss_pred             ceEeeecc------------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          714 QVCRLKLQ------------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       714 ~~~~~~~~------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ......+.                        .|++||+..++.. .+..|...|.+++|+|++.+|++++.||.|+|||
T Consensus       279 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~  358 (425)
T 1r5m_A          279 GNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD  358 (425)
T ss_dssp             BSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEE
Confidence            64333221                        7899999887765 5668899999999999999999999999999996

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.94  E-value=1.6e-25  Score=244.62  Aligned_cols=221  Identities=14%  Similarity=0.132  Sum_probs=187.0

Q ss_pred             eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------EEEEeccCCCCEEEEEEcCC----C---CE
Q 004207          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPS----L---SR  611 (768)
Q Consensus       545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~------~~~tl~~h~~~V~sl~fspd----g---~~  611 (768)
                      ......+.+|.+.|++|+|+|  ++|++|+.||.|+|||+.+++      .+..+.+|...|++++|+|+    +   .+
T Consensus         6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence            345677889999999999998  899999999999999999887      78888899999999999999    9   99


Q ss_pred             EEEEeCCCcEEEEECCCCCe----eEEEeecC-----CCCeEEEEEe----CCCCeEEEEEeCCCcEEEEECCC------
Q 004207          612 LATSSADRTVRVWDTENPDY----SLRTFTGH-----STTVMSLDFH----PSKEDLLCSCDNNSEIRYWSINN------  672 (768)
Q Consensus       612 LaTgs~DgtIrVWDl~t~~~----~~~~~~~h-----~~~V~slafs----p~g~~lLaSgs~Dg~I~iWDl~s------  672 (768)
                      |++++.|+.|++||++++..    .+..+..|     ...|.+++|+    |++..+|++++.||.|++||+++      
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  163 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  163 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence            99999999999999987653    15677778     5899999999    99875377899999999999998      


Q ss_pred             CeeEE-----EEe--------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee--------------------
Q 004207          673 GSCAG-----VFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK--------------------  719 (768)
Q Consensus       673 g~~i~-----~~~--------~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~--------------------  719 (768)
                      ++.+.     .+.        +...+.+++|+|++ .+++++.|+.|++||+++......                    
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~  242 (397)
T 1sq9_A          164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  242 (397)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence            66655     554        36679999999999 999999999999999986543211                    


Q ss_pred             -----------c---ceeEEeecCCCceE-Eecc-------------CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          720 -----------L---QTLELWNMTENKTL-TLSA-------------HDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       720 -----------~---~~I~iwd~~~~~~~-~l~~-------------H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                 .   ..|++||+.+++.+ .+..             |...|.+++|+|++.+|++++.||.|+|||
T Consensus       243 ~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  319 (397)
T 1sq9_A          243 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  319 (397)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             CCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence                       1   25889998877655 5566             999999999999999999999999999996

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.94  E-value=1.6e-25  Score=239.83  Aligned_cols=219  Identities=14%  Similarity=0.231  Sum_probs=178.9

Q ss_pred             EEecCCCCCeEEEEEcCCCCEE-EEEeC---CCcEEEEECCCCeEEEEe-ccCCCCEEEEEEcCC---CCEEEEEeCCCc
Q 004207          549 QLIPASTSKVESCHFSPDGKLL-ATGGH---DKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS---LSRLATSSADRT  620 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSpdg~~L-aSgs~---Dg~I~VWdl~t~~~~~tl-~~h~~~V~sl~fspd---g~~LaTgs~Dgt  620 (768)
                      ..+.+|...|++++|+|++..| ++++.   |+.|+|||+.+++..... .+|...|.+++|+|+   +.+|++++.||.
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            3456899999999999999755 55655   899999999988776443 378999999999998   699999999999


Q ss_pred             EEEEECCCCCeeEEEeecCCCCeEEEEE------eCCCCeEEEEEeCCCcEEEEECCCCe-eEEEEec-----CCCeeEE
Q 004207          621 VRVWDTENPDYSLRTFTGHSTTVMSLDF------HPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC-----QSGATQM  688 (768)
Q Consensus       621 IrVWDl~t~~~~~~~~~~h~~~V~slaf------sp~g~~lLaSgs~Dg~I~iWDl~sg~-~i~~~~~-----~~~i~sl  688 (768)
                      |++||++++...+..+.+|...|.+++|      +|++. +|++++.|+.|++||++++. .+..+..     ...+.++
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  170 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV  170 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence            9999999887557888999999999966      56665 67799999999999999886 6666654     2268888


Q ss_pred             E----EecCCCEEEEEEcCCeEEEEECCCceEeeec---------------------------ceeEEeecCCCceE---
Q 004207          689 R----FQPRLGRILAAAIENYISILDVETQVCRLKL---------------------------QTLELWNMTENKTL---  734 (768)
Q Consensus       689 ~----fsp~~~~llags~Dg~I~IwD~~t~~~~~~~---------------------------~~I~iwd~~~~~~~---  734 (768)
                      +    |+|++.++++++.|+.|++||+++.......                           ..|++||+..+...   
T Consensus       171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  250 (357)
T 3i2n_A          171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF  250 (357)
T ss_dssp             EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE
T ss_pred             EEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce
Confidence            8    6789999999999999999999876542211                           16888887765433   


Q ss_pred             ---EeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 004207          735 ---TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK  768 (768)
Q Consensus       735 ---~l~~H~~~I~sla~spdg~-~LaSgs~DG~V~IWD  768 (768)
                         .+.+|...|++++|+|++. +|++++.||.|+|||
T Consensus       251 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  288 (357)
T 3i2n_A          251 ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK  288 (357)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred             eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence               2238999999999999998 899999999999996

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.2e-25  Score=243.32  Aligned_cols=226  Identities=12%  Similarity=0.088  Sum_probs=175.4

Q ss_pred             cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (768)
Q Consensus       503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VW  582 (768)
                      ...+.++++|+.|++|++|+.....                ....+.     ...|.++.|+|+   +++++.|++|++|
T Consensus        45 ~~d~~~l~sg~~Dg~v~iwd~~~~~----------------~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w  100 (343)
T 3lrv_A           45 YYDKWVCMCRCEDGALHFTQLKDSK----------------TITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLL  100 (343)
T ss_dssp             SEEEEEEEEEEETTEEEEEEESSSS----------------CEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEE
T ss_pred             cCCCCEEEEECCCCcEEEEECCCCc----------------EEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEE
Confidence            3456789999999999999764331                111111     355778888887   9999999999999


Q ss_pred             ECC---------CCeEEEEec-cCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCeeEEEe-ecCCCCeEEEEEe
Q 004207          583 CTE---------SFTVKSTLE-EHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFH  649 (768)
Q Consensus       583 dl~---------t~~~~~tl~-~h~~~V~sl~fsp--dg~~LaTgs~DgtIrVWDl~t~~~~~~~~-~~h~~~V~slafs  649 (768)
                      +..         +++.+..+. .|...|.+++|+|  ++++|++++.||+|++||+++++. +... ..|...|.+++|+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~  179 (343)
T 3lrv_A          101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLH  179 (343)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEEC
T ss_pred             EccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEEC
Confidence            665         455444443 6778899999999  999999999999999999998876 4444 4456689999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCeeE-EEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEe
Q 004207          650 PSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW  726 (768)
Q Consensus       650 p~g~~lLaSgs~Dg~I~iWDl~sg~~i-~~~~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iw  726 (768)
                      |++. +|++|+.||.|++||+++++.+ ..+..  ...|.+++|+|++.+|++++ |+.|++||+++......+.     
T Consensus       180 pdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~-----  252 (343)
T 3lrv_A          180 KDSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP-----  252 (343)
T ss_dssp             TTSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC-----
T ss_pred             CCCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec-----
Confidence            9976 7779999999999999999877 66665  67899999999999999998 5599999998865433222     


Q ss_pred             ecCCCceEEeccCCCCe--eEEEEeCCCCEEEEEEC-CCcEEEeC
Q 004207          727 NMTENKTLTLSAHDKLV--SSLAASTVNGMVASASH-DKCVKIWK  768 (768)
Q Consensus       727 d~~~~~~~~l~~H~~~I--~sla~spdg~~LaSgs~-DG~V~IWD  768 (768)
                              .+..|...+  .+++|+|++.+|++++. |+.|+||+
T Consensus       253 --------~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~  289 (343)
T 3lrv_A          253 --------TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYK  289 (343)
T ss_dssp             --------CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             --------ccccccccccceEEEECCCCCEEEEecCCCCcEEEEE
Confidence                    111233333  47999999999999998 99999994

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.94  E-value=1.7e-24  Score=259.61  Aligned_cols=272  Identities=20%  Similarity=0.309  Sum_probs=214.7

Q ss_pred             cCCCCCceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeE
Q 004207          476 HNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE  547 (768)
Q Consensus       476 ~s~s~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~  547 (768)
                      ..++.+..+.+|.....        +...+....+.+.+.+|++|+.|+.|++|.....                   ..
T Consensus        29 a~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-------------------~~   89 (814)
T 3mkq_A           29 LTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG-------------------EK   89 (814)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC-------------------CE
T ss_pred             EEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-------------------cE
Confidence            33444556666664432        2233445566778889999999999999965432                   23


Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004207          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD  625 (768)
Q Consensus       548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~-~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWD  625 (768)
                      +..+.+|.+.|++++|+|++.+|++++.||.|++||+.++ .....+.+|...|.+++|+| ++.+|++++.||+|++||
T Consensus        90 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd  169 (814)
T 3mkq_A           90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS  169 (814)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred             EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            5567789999999999999999999999999999999886 77788889999999999999 889999999999999999


Q ss_pred             CCCCCeeEEEeecCCCCeEEEEEeC--CCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEc
Q 004207          626 TENPDYSLRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI  702 (768)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~slafsp--~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~  702 (768)
                      +.++.........+...|.+++|+|  ++. ++++++.||.|++||+++++++..+.. ...|.+++|+|++.++++++.
T Consensus       170 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  248 (814)
T 3mkq_A          170 LGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE  248 (814)
T ss_dssp             TTCSSCSEEEECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred             CCCCcceeEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence            9887764444555558999999999  765 677899999999999999999988874 567999999999999999999


Q ss_pred             CCeEEEEECCCceEeeecc--------------------------eeEEeecCCCc----------eE------------
Q 004207          703 ENYISILDVETQVCRLKLQ--------------------------TLELWNMTENK----------TL------------  734 (768)
Q Consensus       703 Dg~I~IwD~~t~~~~~~~~--------------------------~I~iwd~~~~~----------~~------------  734 (768)
                      |+.|++||+.++.....+.                          .+.+|++....          .+            
T Consensus       249 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  328 (814)
T 3mkq_A          249 DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDI  328 (814)
T ss_dssp             TSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCE
T ss_pred             CCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceee
Confidence            9999999998765433221                          34445433211          11            


Q ss_pred             ----------------------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          735 ----------------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       735 ----------------------~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                            .+..|...|.+++|+|++.+|++++ ||.+.||+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~  383 (814)
T 3mkq_A          329 FTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYT  383 (814)
T ss_dssp             EEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred             eeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEE
Confidence                                  1123445688999999999999888 88999985

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.93  E-value=9e-24  Score=230.85  Aligned_cols=239  Identities=16%  Similarity=0.155  Sum_probs=194.1

Q ss_pred             CEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 004207          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE  585 (768)
Q Consensus       507 ~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~L-aSgs~Dg~I~VWdl~  585 (768)
                      .++++++.|+.|++|.....                   +.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~-------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~   62 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN-------------------KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT-------------------EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEEEcCCCCEEEEEECCCC-------------------eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence            46788999999999965322                   2334455554 48999999999976 677789999999999


Q ss_pred             CCeEEEEeccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc
Q 004207          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (768)
Q Consensus       586 t~~~~~tl~~h~~~V~sl~fspdg~~LaTg-s~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~  664 (768)
                      +++++..+..+. .|.+++|+|++++|+++ +.|++|++||+.+++. +..+.. ...+.+++|+|+++.++++++.|+.
T Consensus        63 ~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~  139 (391)
T 1l0q_A           63 TNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVKT-GKSPLGLALSPDGKKLYVTNNGDKT  139 (391)
T ss_dssp             TTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEEC-SSSEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEeC-CCCcceEEECCCCCEEEEEeCCCCE
Confidence            999998887665 89999999999987554 4679999999998764 555554 4578999999999988789999999


Q ss_pred             EEEEECCCCeeEEEEecCCCeeEEEEecCCCEEE-EEEcCCeEEEEECCCceEeeec-----------------------
Q 004207          665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL-AAAIENYISILDVETQVCRLKL-----------------------  720 (768)
Q Consensus       665 I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~ll-ags~Dg~I~IwD~~t~~~~~~~-----------------------  720 (768)
                      |++||+++++++..+..+..+..++|+|++.+++ +++.++.|++||+++......+                       
T Consensus       140 v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~  219 (391)
T 1l0q_A          140 VSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNV  219 (391)
T ss_dssp             EEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEE
T ss_pred             EEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEec
Confidence            9999999999999998888899999999998885 5567899999999876543322                       


Q ss_pred             ----ceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEE-EEEECCCcEEEeC
Q 004207          721 ----QTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK  768 (768)
Q Consensus       721 ----~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~L-aSgs~DG~V~IWD  768 (768)
                          ..|.+||+.+++..........+.+++|+|++++| ++++.|+.|++||
T Consensus       220 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d  272 (391)
T 1l0q_A          220 DKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVID  272 (391)
T ss_dssp             CSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence                16888998887766444344568999999999877 5668899999996

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.1e-24  Score=248.95  Aligned_cols=243  Identities=8%  Similarity=0.049  Sum_probs=184.4

Q ss_pred             cccccCccccCCCCEEEeecCCCcEEEeecCC--------------CCCCCCccccccccCCCceeeEEEEec-CCCCCe
Q 004207          494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPD--------------DADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKV  558 (768)
Q Consensus       494 ~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~--------------~~d~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~I  558 (768)
                      ..++....+.+.+.++|+++.|++|+--....              .+++.+.....|.....      ..+. .|...|
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~------~~~~~~~~~~V   88 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQN------GLLNSQPVCYP   88 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSS------CSSTTSCSCCE
T ss_pred             hccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCc------eEeecCCCCcE
Confidence            34555666777888999999999996210000              01112222222221111      1122 568899


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC-----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe--
Q 004207          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-----WITDVRFSPSLSRLATSSADRTVRVWDTENPDY--  631 (768)
Q Consensus       559 ~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~-----~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~--  631 (768)
                      ++|+|||||.+||+++.||.|+|||.++  ++..+. |..     .|.+++|+|||++||+|+.||+|+|||+.++..  
T Consensus        89 ~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~  165 (588)
T 2j04_A           89 RVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENT  165 (588)
T ss_dssp             EEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTC
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccc
Confidence            9999999999999999999999999654  666677 665     499999999999999999999999999998752  


Q ss_pred             ----eEEEe----ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee---EEEEe-c-CCCeeEEEEecCCCEEE
Q 004207          632 ----SLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK-C-QSGATQMRFQPRLGRIL  698 (768)
Q Consensus       632 ----~~~~~----~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~---i~~~~-~-~~~i~sl~fsp~~~~ll  698 (768)
                          .+.++    .+|...|.+++|+|+|   +++++.|+.|++||+..+..   ..++. . ...|.+++|+  +..++
T Consensus       166 ~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LA  240 (588)
T 2j04_A          166 PEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVV  240 (588)
T ss_dssp             CCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEE
T ss_pred             ccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEE
Confidence                35665    6677899999999997   55778899999999988773   34553 3 4679999999  57777


Q ss_pred             EEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEE--eCCCCEEEEEECCCcEEEeC
Q 004207          699 AAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAA--STVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       699 ags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~--spdg~~LaSgs~DG~V~IWD  768 (768)
                      +++ ++.|++||+.+.....                ...+|.+.|.+++|  +|++..|++++.||+ +||.
T Consensus       241 Sa~-~~tIkLWd~~~~~~~~----------------~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~  294 (588)
T 2j04_A          241 LTC-PGYVHKIDLKNYSISS----------------LKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL  294 (588)
T ss_dssp             EEC-SSEEEEEETTTTEEEE----------------EECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred             EEe-CCeEEEEECCCCeEEE----------------EEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence            776 7999999988755421                12279999999999  999999999999999 9884

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.8e-24  Score=240.36  Aligned_cols=217  Identities=13%  Similarity=0.098  Sum_probs=173.5

Q ss_pred             ecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC--CCeEEEEec--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          551 IPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE--SFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       551 l~~H~~~I~sl~fSpdg~~L-aSgs~Dg~I~VWdl~--t~~~~~tl~--~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      ..+|.+.|++++|+|++++| ++|+.||.|+|||+.  +++.+..+.  .|...|++++|+|++++|++|+.||.|++|+
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID  177 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            35678899999999999996 899999999999999  888887775  5678999999999999999999999999999


Q ss_pred             CCCCCe---eEEEeecCCCCeEEEEEeCC--CCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeeEEEEecCCCEEE
Q 004207          626 TENPDY---SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRIL  698 (768)
Q Consensus       626 l~t~~~---~~~~~~~h~~~V~slafsp~--g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~--~~~~i~sl~fsp~~~~ll  698 (768)
                      +.++..   ....+.+|...|++++|+|+  +..+|++|+.|+.|++||++++.++..+.  +...|.+++|+ ++.+|+
T Consensus       178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~  256 (450)
T 2vdu_B          178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL  256 (450)
T ss_dssp             TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE
T ss_pred             cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE
Confidence            987653   23367789999999999998  23477799999999999999998887744  45779999999 999999


Q ss_pred             EEEcCCeEEEEECCCceEeeecceeE-----Eee--cCCCc--eEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 004207          699 AAAIENYISILDVETQVCRLKLQTLE-----LWN--MTENK--TLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK  768 (768)
Q Consensus       699 ags~Dg~I~IwD~~t~~~~~~~~~I~-----iwd--~~~~~--~~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~IWD  768 (768)
                      +++.|+.|++||+.++.+...+..-.     +++  .....  ......+...|.+++|+|++.+|++++ .|+.|+|||
T Consensus       257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~  336 (450)
T 2vdu_B          257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE  336 (450)
T ss_dssp             EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            99999999999999987654332000     000  00000  000113456799999999999999999 899999996

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.2e-24  Score=235.26  Aligned_cols=261  Identities=7%  Similarity=0.007  Sum_probs=186.6

Q ss_pred             ccccCCCCCceEEEEecCCCCc------ccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceee
Q 004207          473 TLQHNGASSKSLLMFGSDGMGS------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFT  546 (768)
Q Consensus       473 ~l~~s~s~~~~~l~~~~~~~~~------~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~  546 (768)
                      .+...++.+..+.+|.......      ..+....+.+.   +++|+.|++|++|.....       ...++......+.
T Consensus        49 ~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~-------~~~~~~~~~~~~~  118 (343)
T 3lrv_A           49 WVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQ-------ITILDSKTNKVLR  118 (343)
T ss_dssp             EEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTE-------EEEEETTTCCEEE
T ss_pred             CEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCc-------eEEeecCCcceeE
Confidence            4567778888999998765422      11222222222   899999999999965321       1222322222222


Q ss_pred             EEEEecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 004207          547 EFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRV  623 (768)
Q Consensus       547 ~~~~l~~H~~~I~sl~fSp--dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~~LaTgs~DgtIrV  623 (768)
                        ....+|.+.|.+++|+|  ++++|++|+.||+|++||+++++.+.... .|...|++++|+|++.+|++|+.||+|+|
T Consensus       119 --~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i  196 (343)
T 3lrv_A          119 --EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV  196 (343)
T ss_dssp             --EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred             --EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence              22237888999999999  99999999999999999999999877664 45568999999999999999999999999


Q ss_pred             EECCCCCeeEEEeec-CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCe--eEEEEecCCCE
Q 004207          624 WDTENPDYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGA--TQMRFQPRLGR  696 (768)
Q Consensus       624 WDl~t~~~~~~~~~~-h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~----~~~i--~sl~fsp~~~~  696 (768)
                      ||+++++.....+.. |...|++++|+|++. +|++++ |+.|++||+++++++..+..    ...+  .+++|+|++.+
T Consensus       197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  274 (343)
T 3lrv_A          197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGY-WMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN  274 (343)
T ss_dssp             EESSCTTSCCEECCCCTTSCEEEEEECTTSS-EEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred             EECCCCCCCccEEeccCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence            999998864367777 999999999999987 555777 55999999998876654332    1222  46999999999


Q ss_pred             EEEEEc-CCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeC---CCCEEEEEECCCcEEEe
Q 004207          697 ILAAAI-ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAST---VNGMVASASHDKCVKIW  767 (768)
Q Consensus       697 llags~-Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~sp---dg~~LaSgs~DG~V~IW  767 (768)
                      |++++. |+.|++|++.+....        |+.            ..+..++|.+   +...|++++.||.+.++
T Consensus       275 l~~~s~~d~~i~v~~~~~~~~~--------~~~------------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          275 MIAYSNESNSLTIYKFDKKTKN--------WTK------------DEESALCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             EEEEETTTTEEEEEEECTTTCS--------EEE------------EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred             EEEecCCCCcEEEEEEcccccc--------eEe------------cCceeEecCccccccceeEEEecCCceEEE
Confidence            999998 999999998664321        221            2244455555   55566666666665553

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.93  E-value=8.7e-25  Score=233.44  Aligned_cols=246  Identities=13%  Similarity=0.092  Sum_probs=198.4

Q ss_pred             ccCCCCCceEEEEecCCCC-----------cccccCccccCCCC-EEEeecCCCcEEEeec-CCCCCCCCccccccccCC
Q 004207          475 QHNGASSKSLLMFGSDGMG-----------SLTSAPNQLTDMDR-FVDDGSLDDNVESFLS-PDDADPRDRVGRSAEVGK  541 (768)
Q Consensus       475 ~~s~s~~~~~l~~~~~~~~-----------~~~~~~~~l~~~~~-~latGS~D~~v~~w~~-~~~~d~~~~~~~~~~~~~  541 (768)
                      ...++.+..+.+|......           ...+....+.+.+. ++++|+.|+.|++|.. ....              
T Consensus        26 l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~--------------   91 (342)
T 1yfq_A           26 LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS--------------   91 (342)
T ss_dssp             EEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS--------------
T ss_pred             EEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc--------------
Confidence            3444556666666654332           22233455566788 9999999999999955 3221              


Q ss_pred             CceeeEEEEecC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CeEEEEeccCCCCEEEEEEcCCCC
Q 004207          542 GFTFTEFQLIPA--STSKVESCHFSPDGKLLATGGHDKKAVLWCTES---------FTVKSTLEEHTQWITDVRFSPSLS  610 (768)
Q Consensus       542 ~~~~~~~~~l~~--H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t---------~~~~~tl~~h~~~V~sl~fspdg~  610 (768)
                            ...+.+  |...|.+++|+| +.+|++++.|+.|++||+.+         ++++..+. |...|.+++|++++ 
T Consensus        92 ------~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-  162 (342)
T 1yfq_A           92 ------FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-  162 (342)
T ss_dssp             ------EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-
T ss_pred             ------eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc-
Confidence                  245667  999999999999 99999999999999999987         66666665 88999999999886 


Q ss_pred             EEEEEeCCCcEEEEECCC-CCe-eEEEeecCCCCeEEEEEeC-CCCeEEEEEeCCCcEEEEECCCC------eeEEEEec
Q 004207          611 RLATSSADRTVRVWDTEN-PDY-SLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNG------SCAGVFKC  681 (768)
Q Consensus       611 ~LaTgs~DgtIrVWDl~t-~~~-~~~~~~~h~~~V~slafsp-~g~~lLaSgs~Dg~I~iWDl~sg------~~i~~~~~  681 (768)
                       |++++.|+.|++||+++ +.. .......|...|.+++|+| ++. +|++++.||.|++||++..      +....+..
T Consensus       163 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  240 (342)
T 1yfq_A          163 -LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             -EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             -EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC-EEEEEecCCcEEEEEEcCCCcccccccceeeec
Confidence             99999999999999998 553 2345566888999999999 876 6668889999999999876      67777765


Q ss_pred             CC----------CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccC-CCCeeEEEEeC
Q 004207          682 QS----------GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAH-DKLVSSLAAST  750 (768)
Q Consensus       682 ~~----------~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H-~~~I~sla~sp  750 (768)
                      +.          .|.+++|+|++.+|++++.|+.|++||+.++....                .+..| ...|++++  |
T Consensus       241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~----------------~~~~~h~~~v~~~~--~  302 (342)
T 1yfq_A          241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK----------------NFAKFNEDSVVKIA--C  302 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE----------------ECCCCSSSEEEEEE--E
T ss_pred             ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhh----------------hhhcccCCCceEec--C
Confidence            42          79999999999999999999999999998876543                23467 89999999  9


Q ss_pred             CCCEEEEEECCCc
Q 004207          751 VNGMVASASHDKC  763 (768)
Q Consensus       751 dg~~LaSgs~DG~  763 (768)
                      ++.+|++++.||+
T Consensus       303 ~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          303 SDNILCLATSDDT  315 (342)
T ss_dssp             CSSEEEEEEECTH
T ss_pred             CCCeEEEEecCCc
Confidence            9999999999998

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=1.9e-24  Score=233.47  Aligned_cols=198  Identities=12%  Similarity=0.063  Sum_probs=148.4

Q ss_pred             cCCCCCeEEEEEcCC----CCEEEEEeC--------------------CCcEEEEEC-CCCeEEEEeccCCCCEEEEEEc
Q 004207          552 PASTSKVESCHFSPD----GKLLATGGH--------------------DKKAVLWCT-ESFTVKSTLEEHTQWITDVRFS  606 (768)
Q Consensus       552 ~~H~~~I~sl~fSpd----g~~LaSgs~--------------------Dg~I~VWdl-~t~~~~~tl~~h~~~V~sl~fs  606 (768)
                      .-|...|.+++|+||    +.++++++.                    |+.|++|++ .+++.+..+.+|...++.++|+
T Consensus       108 ~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs  187 (356)
T 2w18_A          108 NLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFA  187 (356)
T ss_dssp             SSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEE
T ss_pred             cccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEee
Confidence            334456788888888    777777653                    788888888 4577777777888888888888


Q ss_pred             C---CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCC---CCeEEEEEeCCCCeE-----------EEEEeCCCcEEEEE
Q 004207          607 P---SLSRLATSSADRTVRVWDTENPDYSLRTFTGHS---TTVMSLDFHPSKEDL-----------LCSCDNNSEIRYWS  669 (768)
Q Consensus       607 p---dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~---~~V~slafsp~g~~l-----------LaSgs~Dg~I~iWD  669 (768)
                      +   ++.+|++++.|++|+|||+++++. +.++.+|.   ..+.+++|+|++..+           +++|+.|++|++||
T Consensus       188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~-l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd  266 (356)
T 2w18_A          188 EVQGMQEALLGTTIMNNIVIWNLKTGQL-LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVIN  266 (356)
T ss_dssp             EEETSTTEEEEEETTSEEEEEETTTCCE-EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEE
T ss_pred             ccCCCCceEEEecCCCcEEEEECCCCcE-EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEE
Confidence            8   678999999999999999999885 77777654   367788999998755           36788999999999


Q ss_pred             CCCCeeEEEEe-----c-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCe
Q 004207          670 INNGSCAGVFK-----C-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLV  743 (768)
Q Consensus       670 l~sg~~i~~~~-----~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I  743 (768)
                      ..+++++.++.     . ...+.+..+  .+..+++++.|++|+|||+.++++...                +.+|...+
T Consensus       267 ~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~t----------------L~gH~~~v  328 (356)
T 2w18_A          267 PKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTAL----------------LPPVSDQH  328 (356)
T ss_dssp             TTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEE----------------ECCC--CC
T ss_pred             CCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEE----------------ecCCCCCe
Confidence            99999887663     1 112333333  366888999999999999998876543                34777655


Q ss_pred             e-EEEEeCCCCEEEEEECCCcEEEeC
Q 004207          744 S-SLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       744 ~-sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      . +++|+|++.+|++|+.|++|+|||
T Consensus       329 vs~vafSPDG~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          329 WSFVKWSGTDSHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             CCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEec
Confidence            5 689999999999999999999997

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=4.6e-24  Score=261.38  Aligned_cols=246  Identities=11%  Similarity=0.105  Sum_probs=190.6

Q ss_pred             ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 004207          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD  576 (768)
Q Consensus       497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D  576 (768)
                      +...++++.+.+|++|+.|++|++|.....                   . ......|...|.+|+|+| +++|++++.|
T Consensus        20 V~~lafspdg~~lAsgs~Dg~I~lw~~~~~-------------------~-~~~~~~~~~~V~~l~fsp-g~~L~S~s~D   78 (902)
T 2oaj_A           20 PIAAAFDFTQNLLAIATVTGEVHIYGQQQV-------------------E-VVIKLEDRSAIKEMRFVK-GIYLVVINAK   78 (902)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEEEECSTTC-------------------E-EEEECSSCCCEEEEEEET-TTEEEEEETT
T ss_pred             cEEEEECCCCCEEEEEeCCCEEEEEeCCCc-------------------E-EEEEcCCCCCEEEEEEcC-CCEEEEEECc
Confidence            344555667789999999999999943211                   1 112235788999999999 8899999999


Q ss_pred             CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE----------EEeecCCCCeEEE
Q 004207          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL----------RTFTGHSTTVMSL  646 (768)
Q Consensus       577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~----------~~~~~h~~~V~sl  646 (768)
                      ++|+|||+.+++++.++. |...|++++|+|++++|++|+.||+|++||++++....          ..+.+|.+.|.+|
T Consensus        79 ~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl  157 (902)
T 2oaj_A           79 DTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSI  157 (902)
T ss_dssp             CEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEE
T ss_pred             CeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEE
Confidence            999999999999988886 66889999999999999999999999999999865421          2236788999999


Q ss_pred             EEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-------------------CCeeEEEEecCCCEEEEEEcCCeEE
Q 004207          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQMRFQPRLGRILAAAIENYIS  707 (768)
Q Consensus       647 afsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-------------------~~i~sl~fsp~~~~llags~Dg~I~  707 (768)
                      +|+|++..++++|+.|+.| +||+++++++..+..+                   ..|.+++|+|++.+|++++.|+.|+
T Consensus       158 ~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~  236 (902)
T 2oaj_A          158 QWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLV  236 (902)
T ss_dssp             EEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEE
T ss_pred             EEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEE
Confidence            9999866788899999999 9999999998888754                   5699999999999999999999999


Q ss_pred             EEECCCceEeeecceeEEeecCCCce-----EEeccCCCCeeEEEEeC----CC-CEEEEEECCC-----cEEEeC
Q 004207          708 ILDVETQVCRLKLQTLELWNMTENKT-----LTLSAHDKLVSSLAAST----VN-GMVASASHDK-----CVKIWK  768 (768)
Q Consensus       708 IwD~~t~~~~~~~~~I~iwd~~~~~~-----~~l~~H~~~I~sla~sp----dg-~~LaSgs~DG-----~V~IWD  768 (768)
                      +||+++++++....   +.+......     .....|...|++++|++    ++ .+|++|+.|.     .|++|+
T Consensus       237 lWd~~~g~~~~~r~---l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~  309 (902)
T 2oaj_A          237 FWDANSGHMIMART---VFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID  309 (902)
T ss_dssp             EEETTTCCEEEEEC---SSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred             EEECCCCcEEEEEe---ecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence            99998876543100   000000000     00002566899999964    43 5677887763     677774

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.93  E-value=3.8e-24  Score=233.20  Aligned_cols=214  Identities=20%  Similarity=0.359  Sum_probs=176.9

Q ss_pred             EEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEe-------------ccCCCCEEEEEEcC-CCCEE
Q 004207          548 FQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL-------------EEHTQWITDVRFSP-SLSRL  612 (768)
Q Consensus       548 ~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~~~~~tl-------------~~h~~~V~sl~fsp-dg~~L  612 (768)
                      ...+.+|.+.|++++|+| ++++|++|+.||.|+|||+.+++....+             .+|...|.+++|+| ++.+|
T Consensus        36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  115 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF  115 (408)
T ss_dssp             EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred             eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence            456778999999999999 9999999999999999999887654333             25999999999999 78899


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCC--eEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEE
Q 004207          613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR  689 (768)
Q Consensus       613 aTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~--~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~  689 (768)
                      ++++.||.|++||++++.. +..+. +...+.++.|++.+.  .++++++.|+.|++||+++++++..+.. ...|.+++
T Consensus       116 ~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~  193 (408)
T 4a11_B          116 TSSSFDKTLKVWDTNTLQT-ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS  193 (408)
T ss_dssp             EEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred             EEEeCCCeEEEeeCCCCcc-ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence            9999999999999998664 44444 778899999998643  3788999999999999999998888874 56799999


Q ss_pred             EecCCCE-EEEEEcCCeEEEEECCCceEeeecceeEEeecCCCc-----eEEeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 004207          690 FQPRLGR-ILAAAIENYISILDVETQVCRLKLQTLELWNMTENK-----TLTLSAHDKLVSSLAASTVNGMVASASHDKC  763 (768)
Q Consensus       690 fsp~~~~-llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~-----~~~l~~H~~~I~sla~spdg~~LaSgs~DG~  763 (768)
                      |+|++.+ +++++.|+.|++||+++....     +..++...+.     ......|...|++++|+|++.+|++++.||.
T Consensus       194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  268 (408)
T 4a11_B          194 WSPRYDYILATASADSRVKLWDVRRASGC-----LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR  268 (408)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTCSSCC-----SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ECCCCCcEEEEEcCCCcEEEEECCCCCcc-----cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe
Confidence            9999885 889999999999999876421     1222211111     1123578999999999999999999999999


Q ss_pred             EEEeC
Q 004207          764 VKIWK  768 (768)
Q Consensus       764 V~IWD  768 (768)
                      |++||
T Consensus       269 i~vwd  273 (408)
T 4a11_B          269 MRLWN  273 (408)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.93  E-value=1e-23  Score=235.62  Aligned_cols=209  Identities=22%  Similarity=0.424  Sum_probs=181.6

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (768)
Q Consensus       548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~  627 (768)
                      +....+|...|+|+.|  ++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|  ++++|++|+.||+|+|||++
T Consensus       126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~  201 (435)
T 1p22_A          126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN  201 (435)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence            4445577888999888  8999999999999999999999999999999999999999  67899999999999999999


Q ss_pred             CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeE---EEEe-cCCCeeEEEEecCCCEEEEEEcC
Q 004207          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK-CQSGATQMRFQPRLGRILAAAIE  703 (768)
Q Consensus       628 t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i---~~~~-~~~~i~sl~fsp~~~~llags~D  703 (768)
                      +++. +..+.+|...|.+++|+++   ++++|+.||.|++||++++..+   ..+. +...|.+++|  ++.++++++.|
T Consensus       202 ~~~~-~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d  275 (435)
T 1p22_A          202 TGEM-LNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD  275 (435)
T ss_dssp             SCCE-EEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred             CCcE-EEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence            8875 7888899999999999743   7889999999999999987655   3333 3567888888  56799999999


Q ss_pred             CeEEEEECCCceEeeecc-----------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEE
Q 004207          704 NYISILDVETQVCRLKLQ-----------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS  759 (768)
Q Consensus       704 g~I~IwD~~t~~~~~~~~-----------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs  759 (768)
                      +.|++||+++......+.                       .|++||+.++..+ .+.+|...|.+++|  ++.+|++|+
T Consensus       276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~  353 (435)
T 1p22_A          276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA  353 (435)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE
T ss_pred             CeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe
Confidence            999999999876554432                       7999999987765 67789999999999  688999999


Q ss_pred             CCCcEEEeC
Q 004207          760 HDKCVKIWK  768 (768)
Q Consensus       760 ~DG~V~IWD  768 (768)
                      .||.|+|||
T Consensus       354 ~dg~i~vwd  362 (435)
T 1p22_A          354 YDGKIKVWD  362 (435)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCcEEEEE
Confidence            999999997

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.5e-24  Score=260.60  Aligned_cols=207  Identities=21%  Similarity=0.310  Sum_probs=174.5

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeEEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEE
Q 004207          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVW  624 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~--t~~~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVW  624 (768)
                      ..+.+|.+.|+|++|+|++++|++|+.||.|+|||+.  +++.+..+.+|.+.|++++|+++  +++|++|+.||+|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            4568999999999999999999999999999999998  56778889999999999999988  9999999999999999


Q ss_pred             ECCCCCe-eEEEeecCCCCeEEEEEeCC--CCeEEEEEeCCCcEEEEECCCCee--EEEE-ecCCCeeEEEEec------
Q 004207          625 DTENPDY-SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSC--AGVF-KCQSGATQMRFQP------  692 (768)
Q Consensus       625 Dl~t~~~-~~~~~~~h~~~V~slafsp~--g~~lLaSgs~Dg~I~iWDl~sg~~--i~~~-~~~~~i~sl~fsp------  692 (768)
                      |++++.. .+..+.+|...|++++|+|+  +. ++++|+.||.|++||++++..  ...+ .+...|.+++|+|      
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~  161 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence            9998652 46777889999999999998  55 677999999999999988732  2222 3467899999999      


Q ss_pred             -------CCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC---CCEEEEEECCC
Q 004207          693 -------RLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV---NGMVASASHDK  762 (768)
Q Consensus       693 -------~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd---g~~LaSgs~DG  762 (768)
                             ++..+++++.|+.|++||+++......            ....+.+|...|++++|+|+   +.+|++++.||
T Consensus       162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~------------~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg  229 (753)
T 3jro_A          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV------------LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR  229 (753)
T ss_dssp             -----CGGGCCEEEEETTSCEEEEEEETTTTEEE------------EEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred             cccccCCCCCEEEEEECCCeEEEEeccCCcccce------------eeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence                   488999999999999999977532111            12245689999999999999   89999999999


Q ss_pred             cEEEeC
Q 004207          763 CVKIWK  768 (768)
Q Consensus       763 ~V~IWD  768 (768)
                      .|+|||
T Consensus       230 ~I~iwd  235 (753)
T 3jro_A          230 TCIIWT  235 (753)
T ss_dssp             CEEEEE
T ss_pred             EEEEec
Confidence            999996

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.93  E-value=1.8e-24  Score=241.95  Aligned_cols=206  Identities=17%  Similarity=0.335  Sum_probs=176.1

Q ss_pred             EEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC----------CeEEEEeccCCCCEEEEEEcCCCC-EEEEE
Q 004207          548 FQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLS-RLATS  615 (768)
Q Consensus       548 ~~~l~~H~~~I~sl~fSpd-g~~LaSgs~Dg~I~VWdl~t----------~~~~~tl~~h~~~V~sl~fspdg~-~LaTg  615 (768)
                      ......|.+.|++++|+|+ +.+|++++.||.|+|||+.+          ...+..+.+|...|++++|+|++. +|++|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            3445689999999999997 67999999999999999986          677788899999999999999988 99999


Q ss_pred             eCCCcEEEEECCCCCe------eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC---eeEEEEe-cCCCe
Q 004207          616 SADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFK-CQSGA  685 (768)
Q Consensus       616 s~DgtIrVWDl~t~~~------~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg---~~i~~~~-~~~~i  685 (768)
                      +.||+|+|||+..+..      ....+.+|...|.+++|+|++..+|++++.|+.|++||++++   ..+..+. +...|
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            9999999999987432      135677899999999999977779999999999999999987   4566664 46779


Q ss_pred             eEEEEecCCC-EEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCC-EEEEEECCCc
Q 004207          686 TQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKC  763 (768)
Q Consensus       686 ~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs~DG~  763 (768)
                      .+++|+|++. .+++++.|+.|++||+++...               .+..+..|...|++++|+|++. +|++++.||.
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~---------------~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~  345 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKL---------------KLHSFESHKDEIFQVQWSPHNETILASSGTDRR  345 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTS---------------CSEEEECCSSCEEEEEECSSCTTEEEEEETTSC
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC---------------CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc
Confidence            9999999987 577899999999999986321               1234557999999999999985 7999999999


Q ss_pred             EEEeC
Q 004207          764 VKIWK  768 (768)
Q Consensus       764 V~IWD  768 (768)
                      |+|||
T Consensus       346 i~iwd  350 (430)
T 2xyi_A          346 LHVWD  350 (430)
T ss_dssp             CEEEE
T ss_pred             EEEEe
Confidence            99996

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1e-23  Score=236.78  Aligned_cols=231  Identities=13%  Similarity=0.084  Sum_probs=180.5

Q ss_pred             CCCE-EEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          505 MDRF-VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (768)
Q Consensus       505 ~~~~-latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWd  583 (768)
                      .+.+ +++|+.|+.|++|.....              .+.....+. ...|...|++++|+|++++|++|+.||.|++|+
T Consensus       113 d~~~l~~~~~~dg~v~iwd~~~~--------------~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B          113 DESRLIACADSDKSLLVFDVDKT--------------SKNVLKLRK-RFCFSKRPNAISIAEDDTTVIIADKFGDVYSID  177 (450)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECSS--------------SSSCEEEEE-EEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEECcCC--------------CCceeeeee-cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            4556 499999999999966411              011111111 136778999999999999999999999999999


Q ss_pred             CCCCeEEE----EeccCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEE
Q 004207          584 TESFTVKS----TLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (768)
Q Consensus       584 l~t~~~~~----tl~~h~~~V~sl~fspd---g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lL  656 (768)
                      +.+++...    .+.+|...|++++|+|+   +++|++|+.|++|+|||++++......+.+|...|.+++|+ ++. +|
T Consensus       178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~-~l  255 (450)
T 2vdu_B          178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY-LL  255 (450)
T ss_dssp             TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT-EE
T ss_pred             cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC-EE
Confidence            98876544    77789999999999999   99999999999999999998876444467899999999999 766 66


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEEec--------------------------CCCeeEEEEecCCCEEEEEE-cCCeEEEE
Q 004207          657 CSCDNNSEIRYWSINNGSCAGVFKC--------------------------QSGATQMRFQPRLGRILAAA-IENYISIL  709 (768)
Q Consensus       657 aSgs~Dg~I~iWDl~sg~~i~~~~~--------------------------~~~i~sl~fsp~~~~llags-~Dg~I~Iw  709 (768)
                      ++|+.|+.|++||+++++++..+..                          ...+..++|+|++.++++++ .|+.|++|
T Consensus       256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw  335 (450)
T 2vdu_B          256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL  335 (450)
T ss_dssp             EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence            7999999999999999998888763                          24588999999999999999 89999999


Q ss_pred             EC--CCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC-------CCcEEEe
Q 004207          710 DV--ETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIW  767 (768)
Q Consensus       710 D~--~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~-------DG~V~IW  767 (768)
                      |+  .+.....             ....+..| ..|.+++|+|++ ++++.+.       +..|.||
T Consensus       336 ~~~~~~~~~l~-------------~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~  387 (450)
T 2vdu_B          336 EMSEKQKGDLA-------------LKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI  387 (450)
T ss_dssp             EECSSSTTCEE-------------EEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred             EeccCCCCcee-------------eccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence            98  4331110             01234456 789999999954 4444432       4557777

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.92  E-value=5.2e-23  Score=227.97  Aligned_cols=254  Identities=10%  Similarity=0.118  Sum_probs=202.6

Q ss_pred             CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK  578 (768)
Q Consensus       499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~  578 (768)
                      ...+.+.+.++++++.|+.|++|.......              ........+.+|.+.|.+++|++++.++++++.|+.
T Consensus       127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~  192 (433)
T 3bws_A          127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQT--------------VRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA  192 (433)
T ss_dssp             CCEESSSSEEEEEBTTSSSEEEEETTTCCE--------------EEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred             EEEEeCCCeEEEEeCCCCeEEEEECCCCeE--------------eeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence            344555667888888999999996543310              000011134689999999999999999999999999


Q ss_pred             EEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEE
Q 004207          579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC  657 (768)
Q Consensus       579 I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLa  657 (768)
                      |++||+++++.+..+..|...+.+++|+|+++++++++ .|+.|++||+++++. +..+.. ...+.+++|+|++..+++
T Consensus       193 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~g~~l~~  270 (433)
T 3bws_A          193 VHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-IRKTDK-IGLPRGLLLSKDGKELYI  270 (433)
T ss_dssp             EEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEECCC-CSEEEEEEECTTSSEEEE
T ss_pred             EEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-EEEecC-CCCceEEEEcCCCCEEEE
Confidence            99999999999999988999999999999999885554 799999999998664 555554 456999999999886665


Q ss_pred             EEe-------CCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEE-EcCCeEEEEECCCceEeeecc--------
Q 004207          658 SCD-------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQ--------  721 (768)
Q Consensus       658 Sgs-------~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llag-s~Dg~I~IwD~~t~~~~~~~~--------  721 (768)
                      ++.       .|+.|++||+++++.+..+.....+.+++|+|++..++++ +.++.|++||+.+.+....+.        
T Consensus       271 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~  350 (433)
T 3bws_A          271 AQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTI  350 (433)
T ss_dssp             EEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred             EECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeE
Confidence            543       5889999999999988888777789999999999876554 689999999998765432221        


Q ss_pred             -------------------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC-CCcEEEeC
Q 004207          722 -------------------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-DKCVKIWK  768 (768)
Q Consensus       722 -------------------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~-DG~V~IWD  768 (768)
                                                     .|.+||..+++......+...+.+++|+|++++|++++. |+.|+||+
T Consensus       351 ~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~  429 (433)
T 3bws_A          351 ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYR  429 (433)
T ss_dssp             EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             EEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence                                           478899888887765555678999999999999998875 99999996

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.5e-23  Score=254.86  Aligned_cols=207  Identities=16%  Similarity=0.152  Sum_probs=169.1

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q 004207          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (768)
Q Consensus       552 ~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~  631 (768)
                      .+|.+.|+|++|+|++++||+|+.||+|+||+..+.+....+ .|...|.+|+|+| +++|++++.|++|+|||+++++.
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~   91 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV   91 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence            489999999999999999999999999999999888777665 4788999999999 88999999999999999998775


Q ss_pred             eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEE-E----------e-cCCCeeEEEEecCC-CEEE
Q 004207          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-F----------K-CQSGATQMRFQPRL-GRIL  698 (768)
Q Consensus       632 ~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~-~----------~-~~~~i~sl~fsp~~-~~ll  698 (768)
                       +..+. |...|++++|+|++. +|++|+.||.|++||++++.+... +          . +...|.+++|+|++ ..++
T Consensus        92 -~~~~~-~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~  168 (902)
T 2oaj_A           92 -LTTVF-VPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL  168 (902)
T ss_dssp             -EEEEE-CSSCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred             -EEEEc-CCCCEEEEEECCCCC-EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence             55555 678999999999987 566899999999999998876411 1          1 24679999999964 6788


Q ss_pred             EEEcCCeEEEEECCCceEeeecceeEEeecCCCce------EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          699 AAAIENYISILDVETQVCRLKLQTLELWNMTENKT------LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       699 ags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~------~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +++.|+.| +||+++..+...+.    .....+..      .....|...|++++|+|++.+|++++.||+|+|||
T Consensus       169 ~g~~dg~v-lWd~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd  239 (902)
T 2oaj_A          169 ISYEYVTL-TYSLVENEIKQSFI----YELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD  239 (902)
T ss_dssp             EECSSCEE-EEETTTTEEEEEEC----CCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             EEeCCCcE-EEECCCCceEEEEe----cccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Confidence            88999999 99999887643322    00000000      01234678899999999999999999999999997

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.91  E-value=5e-23  Score=228.08  Aligned_cols=221  Identities=10%  Similarity=0.036  Sum_probs=188.7

Q ss_pred             eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-----EeccCCCCEEEEEEcCCCCEEEEEeCCCc
Q 004207          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSPSLSRLATSSADRT  620 (768)
Q Consensus       546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~-----tl~~h~~~V~sl~fspdg~~LaTgs~Dgt  620 (768)
                      ..+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++.+.     .+.+|...|.+++|++++.++++++.|+.
T Consensus       114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~  192 (433)
T 3bws_A          114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA  192 (433)
T ss_dssp             EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred             eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence            4445555554 46699999977788888889999999999998887     34578889999999999999999999999


Q ss_pred             EEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEE
Q 004207          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA  700 (768)
Q Consensus       621 IrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llag  700 (768)
                      |++||+++++. +..+..|...+.+++|+|++..++++++.|+.|++||+++++.+..+..+..+.+++|+|++.+++++
T Consensus       193 v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  271 (433)
T 3bws_A          193 VHVFDLKTLAY-KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIA  271 (433)
T ss_dssp             EEEEETTTCCE-EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEE
T ss_pred             EEEEECCCceE-EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEE
Confidence            99999998765 66777889999999999999988888888999999999999999888887789999999999999988


Q ss_pred             E--------cCCeEEEEECCCceEeeecc-------------------------eeEEeecCCCceEEeccCCCCeeEEE
Q 004207          701 A--------IENYISILDVETQVCRLKLQ-------------------------TLELWNMTENKTLTLSAHDKLVSSLA  747 (768)
Q Consensus       701 s--------~Dg~I~IwD~~t~~~~~~~~-------------------------~I~iwd~~~~~~~~l~~H~~~I~sla  747 (768)
                      +        .|+.|++||+.+++......                         .+.+||+.+++......+...+.+++
T Consensus       272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~  351 (433)
T 3bws_A          272 QFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIA  351 (433)
T ss_dssp             EEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEE
T ss_pred             ECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEE
Confidence            8        48899999998765433221                         78899999888776667888899999


Q ss_pred             EeCCCCEEEEEEC---------------CCcEEEeC
Q 004207          748 ASTVNGMVASASH---------------DKCVKIWK  768 (768)
Q Consensus       748 ~spdg~~LaSgs~---------------DG~V~IWD  768 (768)
                      |+|++.+|++++.               ||.|++||
T Consensus       352 ~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d  387 (433)
T 3bws_A          352 LSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVID  387 (433)
T ss_dssp             ECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEE
T ss_pred             EcCCCCEEEEEecCCCccccccccccccceEEEEEE
Confidence            9999999988887               57999996

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.91  E-value=2.3e-22  Score=211.98  Aligned_cols=206  Identities=19%  Similarity=0.311  Sum_probs=173.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~--~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~  634 (768)
                      .+.+|+||+++ +||+| .|++|+|||+++++++..+.  +|...|++|+|+|++++|++|+.||+|+|||+++++. +.
T Consensus        27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~-~~  103 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-LR  103 (318)
T ss_dssp             TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EE
T ss_pred             cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee-EE
Confidence            36789999876 77766 59999999999999887664  6778899999999999999999999999999998765 78


Q ss_pred             EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe-eEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004207          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVE  712 (768)
Q Consensus       635 ~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~-~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~  712 (768)
                      .+.+|...+.++.+.+   .++++++.++.+++|+..... .+..+. +...+..+.+.+++.++++++.|+.|++||++
T Consensus       104 ~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  180 (318)
T 4ggc_A          104 NMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  180 (318)
T ss_dssp             EEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             EecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence            8899999998887764   378899999999999998754 344444 35678999999999999999999999999998


Q ss_pred             CceEeee--------------------------------cceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE-
Q 004207          713 TQVCRLK--------------------------------LQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-  759 (768)
Q Consensus       713 t~~~~~~--------------------------------~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs-  759 (768)
                      ++.....                                ...|++||...........|...|..+.|++++..+++++ 
T Consensus       181 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg  260 (318)
T 4ggc_A          181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHG  260 (318)
T ss_dssp             CBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEEC
T ss_pred             CCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEE
Confidence            6532110                                0168999999988888888889999999999999888765 


Q ss_pred             -CCCcEEEeC
Q 004207          760 -HDKCVKIWK  768 (768)
Q Consensus       760 -~DG~V~IWD  768 (768)
                       .|+.|+|||
T Consensus       261 ~~d~~i~iwd  270 (318)
T 4ggc_A          261 FAQNQLVIWK  270 (318)
T ss_dssp             TTTCCEEEEE
T ss_pred             cCCCEEEEEE
Confidence             799999996

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.91  E-value=1.3e-23  Score=232.42  Aligned_cols=215  Identities=15%  Similarity=0.116  Sum_probs=145.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-----EeccCCCCEEEEEEcC--------CCCEEEEEeCCC
Q 004207          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSP--------SLSRLATSSADR  619 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~-----tl~~h~~~V~sl~fsp--------dg~~LaTgs~Dg  619 (768)
                      .|...+....+++++.+|++++.|++|+|||+++++...     .+.+|.+.|++|+|+|        |+++||+|+.|+
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~  166 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC  166 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence            444555555566678899999999999999998876543     3578999999999997        788999999999


Q ss_pred             cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-------------------
Q 004207          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------------------  680 (768)
Q Consensus       620 tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-------------------  680 (768)
                      +|+|||++++.. +..+..|...|.+++|+|++..+|++|+.|++|++||++++.......                   
T Consensus       167 tv~~Wd~~~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~  245 (393)
T 4gq1_A          167 TLIIWRLTDEGP-ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV  245 (393)
T ss_dssp             EEEEEEEETTEE-EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred             eEEEEECCCCce-eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence            999999987665 556667889999999999988889999999999999999876443221                   


Q ss_pred             -------cCCCeeEEEEe-cCCCEEEEEEcCCeEEEEECCCceEeeecc--eeEEeecCCCc-eEEeccCCCCeeEEEEe
Q 004207          681 -------CQSGATQMRFQ-PRLGRILAAAIENYISILDVETQVCRLKLQ--TLELWNMTENK-TLTLSAHDKLVSSLAAS  749 (768)
Q Consensus       681 -------~~~~i~sl~fs-p~~~~llags~Dg~I~IwD~~t~~~~~~~~--~I~iwd~~~~~-~~~l~~H~~~I~sla~s  749 (768)
                             +...+.++.|. +++..+++++.|+.|++||+.+......+.  ...++...... ......+...+..+.+.
T Consensus       246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (393)
T 4gq1_A          246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP  325 (393)
T ss_dssp             ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred             eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc
Confidence                   12346778886 788999999999999999998876544332  12222222111 11233333334444433


Q ss_pred             CCC-CEEEEEECCCcEEEeC
Q 004207          750 TVN-GMVASASHDKCVKIWK  768 (768)
Q Consensus       750 pdg-~~LaSgs~DG~V~IWD  768 (768)
                      +.+ .++++|+.||.|+|||
T Consensus       326 ~~~~~~~~sgs~Dg~V~lwd  345 (393)
T 4gq1_A          326 RYMDYFATAHSQHGLIQLIN  345 (393)
T ss_dssp             SCTTEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEECCCCEEEEEE
Confidence            333 4667788899999996

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.91  E-value=1.7e-22  Score=220.44  Aligned_cols=245  Identities=9%  Similarity=0.158  Sum_probs=179.0

Q ss_pred             ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEE-EEEeC
Q 004207          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGH  575 (768)
Q Consensus       497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~L-aSgs~  575 (768)
                      +....+.+.+.++++|+.|+ +++|.....                   ......  +...+..++|.++++++ ++++.
T Consensus        22 V~~v~fs~dg~~la~g~~~~-~~iw~~~~~-------------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   79 (355)
T 3vu4_A           22 VTDYEFNQDQSCLILSTLKS-FEIYNVHPV-------------------AHIMSQ--EMRHLSKVRMLHRTNYVAFVTGV   79 (355)
T ss_dssp             CCEEEECTTSSEEEEECSSE-EEEEEETTE-------------------EEEEEE--ECSCCCEEEECTTSSEEEEECSS
T ss_pred             eEEEEECCCCCEEEEEcCCE-EEEEecCCc-------------------ceeeee--ecCCeEEEEEcCCCCEEEEEECC
Confidence            33444455677999998765 789954211                   111111  11248888999988877 56778


Q ss_pred             CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCC-----------------------------------CEEEE--EeCC
Q 004207          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-----------------------------------SRLAT--SSAD  618 (768)
Q Consensus       576 Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg-----------------------------------~~LaT--gs~D  618 (768)
                      |++|+|||+.+++++..+. |...|.+++|+++.                                   .++++  |+.|
T Consensus        80 d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~  158 (355)
T 3vu4_A           80 KEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNL  158 (355)
T ss_dssp             TTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCT
T ss_pred             ccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcC
Confidence            8999999999999998886 56689999998752                                   23344  4678


Q ss_pred             CcEEEEECCCCC--------------ee-EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc-EEEEECCCCeeEEEEe--
Q 004207          619 RTVRVWDTENPD--------------YS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCAGVFK--  680 (768)
Q Consensus       619 gtIrVWDl~t~~--------------~~-~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~-I~iWDl~sg~~i~~~~--  680 (768)
                      |+|++||++++.              .+ +..+.+|...|++++|+|++. +|++|+.|++ |++||+++++++..+.  
T Consensus       159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd~~~~~~~~~~~~g  237 (355)
T 3vu4_A          159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDGTIIRVFKTEDGVLVREFRRG  237 (355)
T ss_dssp             TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS-EEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred             cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence            888999888654              11 577889999999999999976 7779999998 9999999999999998  


Q ss_pred             -cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEee--eccee-------EEeecCCCceEEec-cCCCCeeEEEEe
Q 004207          681 -CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQTL-------ELWNMTENKTLTLS-AHDKLVSSLAAS  749 (768)
Q Consensus       681 -~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~--~~~~I-------~iwd~~~~~~~~l~-~H~~~I~sla~s  749 (768)
                       +...|.+++|+|++.+|++++.|+.|++||++......  .+..+       ..|.+   ....+. .+...+..++|+
T Consensus       238 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~  314 (355)
T 3vu4_A          238 LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSL---CNFKLSVDKHVRGCKIAWI  314 (355)
T ss_dssp             TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCS---EEEECCCCTTCCCCEEEES
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccce---eEEEeccCCCCCceEEEEe
Confidence             56789999999999999999999999999997653211  11100       00110   011111 223345779999


Q ss_pred             CCCCEEEEEECCCcEEEeC
Q 004207          750 TVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       750 pdg~~LaSgs~DG~V~IWD  768 (768)
                      +++.+|++++.||.+++|+
T Consensus       315 ~d~~~l~~~~~dg~~~~~~  333 (355)
T 3vu4_A          315 SESSLVVVWPHTRMIETFK  333 (355)
T ss_dssp             SSSEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEE
Confidence            9999999999999999985

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.90  E-value=2.9e-22  Score=219.78  Aligned_cols=193  Identities=17%  Similarity=0.172  Sum_probs=156.6

Q ss_pred             ccccCCCCEEE--eecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 004207          500 NQLTDMDRFVD--DGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK  577 (768)
Q Consensus       500 ~~l~~~~~~la--tGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg  577 (768)
                      .++.+.+++++  +|+.|++|++|+....                   ..+..+ .|.+.|.+|+|+|||++|++++.| 
T Consensus       139 v~fSpDg~~la~as~~~d~~i~iwd~~~~-------------------~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~-  197 (365)
T 4h5i_A          139 VYISREGTVAAIASSKVPAIMRIIDPSDL-------------------TEKFEI-ETRGEVKDLHFSTDGKVVAYITGS-  197 (365)
T ss_dssp             EEECTTSSCEEEEESCSSCEEEEEETTTT-------------------EEEEEE-ECSSCCCEEEECTTSSEEEEECSS-
T ss_pred             EEEcCCCCEEEEEECCCCCEEEEeECCCC-------------------cEEEEe-CCCCceEEEEEccCCceEEeccce-
Confidence            45666677654  5668999999965332                   223333 377889999999999999999855 


Q ss_pred             cEEEEECCCCeEEE--EeccCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCCee---EEEeecCCCCeEEEEE
Q 004207          578 KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADR----TVRVWDTENPDYS---LRTFTGHSTTVMSLDF  648 (768)
Q Consensus       578 ~I~VWdl~t~~~~~--tl~~h~~~V~sl~fspdg~~LaTgs~Dg----tIrVWDl~t~~~~---~~~~~~h~~~V~slaf  648 (768)
                      .+++|+..+++.+.  ....|...|.+++|+|++.++++++.|+    +|++||+......   ...+.+|...|++++|
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~  277 (365)
T 4h5i_A          198 SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDV  277 (365)
T ss_dssp             CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEE
T ss_pred             eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEE
Confidence            56677766666553  3456888999999999999999999887    6888998765432   3567789999999999


Q ss_pred             eCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004207          649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (768)
Q Consensus       649 sp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~--~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~  714 (768)
                      +|++. +|++|+.|++|+|||+++++++..+.  +...|++++|+|++.+|++++.|++|+|||+...
T Consensus       278 Spdg~-~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          278 DMKGE-LAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             CTTSC-EEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CCCCC-ceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99987 77799999999999999999998863  4677999999999999999999999999999653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.90  E-value=1.5e-22  Score=220.92  Aligned_cols=200  Identities=13%  Similarity=0.130  Sum_probs=154.2

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEEC
Q 004207          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDT  626 (768)
Q Consensus       548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~L-aTgs~DgtIrVWDl  626 (768)
                      +..+..|...|+|++|+|||++|++|+.|+ ++|||+++++.......+  .+..++|.++++.+ ++++.|++|+|||+
T Consensus        12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~   88 (355)
T 3vu4_A           12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDD   88 (355)
T ss_dssp             -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred             ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence            445678999999999999999999998775 789999988776555432  47888999888877 56778899999999


Q ss_pred             CCCCeeEEEeecCCCCeEEEEEeCCC-----------------------------------CeEEEE-EeCCCcEEEEEC
Q 004207          627 ENPDYSLRTFTGHSTTVMSLDFHPSK-----------------------------------EDLLCS-CDNNSEIRYWSI  670 (768)
Q Consensus       627 ~t~~~~~~~~~~h~~~V~slafsp~g-----------------------------------~~lLaS-gs~Dg~I~iWDl  670 (768)
                      .+++. +..+. |...|.+++|+++.                                   ..++++ |+.||.|++||+
T Consensus        89 ~~~~~-~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~  166 (355)
T 3vu4_A           89 VKKQD-VSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKL  166 (355)
T ss_dssp             TTTEE-EEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEEC
T ss_pred             CCCcE-EEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEEC
Confidence            98765 55555 66688888887642                                   112222 577889999998


Q ss_pred             CCCe----------------eEEEEec-CCCeeEEEEecCCCEEEEEEcCCe-EEEEECCCceEeeecceeEEeecCCCc
Q 004207          671 NNGS----------------CAGVFKC-QSGATQMRFQPRLGRILAAAIENY-ISILDVETQVCRLKLQTLELWNMTENK  732 (768)
Q Consensus       671 ~sg~----------------~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~-I~IwD~~t~~~~~~~~~I~iwd~~~~~  732 (768)
                      +++.                ++..+.. ...|.+++|+|++.+|++++.|++ |++||++++.+..              
T Consensus       167 ~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~--------------  232 (355)
T 3vu4_A          167 QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR--------------  232 (355)
T ss_dssp             CC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE--------------
T ss_pred             CCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE--------------
Confidence            8765                1445543 567999999999999999999998 9999998876543              


Q ss_pred             eEEec-c-CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          733 TLTLS-A-HDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       733 ~~~l~-~-H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                        .+. + |...|++++|+|++.+|++++.|++|+|||
T Consensus       233 --~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~  268 (355)
T 3vu4_A          233 --EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE  268 (355)
T ss_dssp             --EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred             --EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence              233 4 899999999999999999999999999996

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.90  E-value=5.6e-23  Score=234.94  Aligned_cols=228  Identities=11%  Similarity=0.130  Sum_probs=180.0

Q ss_pred             cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCC-----CeEEEEEcCCCCEEEEEeCCC
Q 004207          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS-----KVESCHFSPDGKLLATGGHDK  577 (768)
Q Consensus       503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~-----~I~sl~fSpdg~~LaSgs~Dg  577 (768)
                      .+.+..||+++.|++|++|...                 +    .+..+. |..     .|.+++|||||++||+|+.||
T Consensus        94 SPdG~~LAs~s~dg~V~iwd~~-----------------~----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DG  151 (588)
T 2j04_A           94 SPIDDWMAVLSNNGNVSVFKDN-----------------K----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDG  151 (588)
T ss_dssp             CSSSSCEEEEETTSCEEEEETT-----------------E----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTS
T ss_pred             CCCCCEEEEEeCCCcEEEEeCC-----------------c----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCC
Confidence            3356789999999999999521                 0    344455 554     599999999999999999999


Q ss_pred             cEEEEECCCCe-------EEEEe----ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe--eEEEe-ecCCCCe
Q 004207          578 KAVLWCTESFT-------VKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTF-TGHSTTV  643 (768)
Q Consensus       578 ~I~VWdl~t~~-------~~~tl----~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~--~~~~~-~~h~~~V  643 (768)
                      +|+|||+.+++       .+.++    .+|...|.+|+|+|++  |++++.|++|++||+..+..  ...++ .+|...|
T Consensus       152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V  229 (588)
T 2j04_A          152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKI  229 (588)
T ss_dssp             EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCC
T ss_pred             EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcE
Confidence            99999999875       35676    6778899999999998  88899999999999987663  23455 4788999


Q ss_pred             EEEEEeCCCCeEEEEEeCCCcEEEEECCCCee-EEEEecCCCeeEEEE--ecCCCEEEEEEcCCeEEEEECCCceEee--
Q 004207          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKCQSGATQMRF--QPRLGRILAAAIENYISILDVETQVCRL--  718 (768)
Q Consensus       644 ~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~-i~~~~~~~~i~sl~f--sp~~~~llags~Dg~I~IwD~~t~~~~~--  718 (768)
                      .+++|+  +. .+++++ +++|++||+.++.. ...+.+...+..+.|  +|++..+++++.||+ ++|.........  
T Consensus       230 ~svaFs--g~-~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~  304 (588)
T 2j04_A          230 TDLKIV--DY-KVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADN  304 (588)
T ss_dssp             CCEEEE--TT-EEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCC
T ss_pred             EEEEEE--CC-EEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCc
Confidence            999999  44 566666 69999999998887 444456777999999  999888888888999 999986422110  


Q ss_pred             -----ecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 004207          719 -----KLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH  760 (768)
Q Consensus       719 -----~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~  760 (768)
                           ..+.+++|+...+....+ .+...|++++|+|+|..+|+++.
T Consensus       305 ~l~a~~d~~v~lW~~~g~~l~~~-~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          305 IIAPYLEKKFKKWSTIWNEFNNY-ETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             SSHHHHHHHHHHTTTTTTSSSSS-CCEEEEEEEEECTTSSEEEEEEE
T ss_pred             eEEEEcCCEEEEEECCCCceeee-ccceEEEEEEECCCCCEEEEEEe
Confidence                 122688898766654433 33667999999999999999874

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.90  E-value=3.8e-21  Score=213.88  Aligned_cols=220  Identities=17%  Similarity=0.319  Sum_probs=186.8

Q ss_pred             CCceEEEEecCCC----------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEE
Q 004207          480 SSKSLLMFGSDGM----------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ  549 (768)
Q Consensus       480 ~~~~~l~~~~~~~----------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~  549 (768)
                      -+..+.+|.....          +...+....+.+.+.+|++|+.|++|++|.....                   +.+.
T Consensus       123 ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~-------------------~~~~  183 (420)
T 4gga_A          123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-------------------KRLR  183 (420)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------------------EEEE
T ss_pred             eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC-------------------cEEE
Confidence            3678888886643          1223556778889999999999999999965332                   3466


Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (768)
Q Consensus       550 ~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t-~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t  628 (768)
                      .+.+|...|.+++|  ++.+|++|+.|+.+++||... ...+.++.+|...+.++.|+|++.+|++++.|+.|+|||..+
T Consensus       184 ~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~  261 (420)
T 4gga_A          184 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  261 (420)
T ss_dssp             EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence            77899999999988  578999999999999999876 456678899999999999999999999999999999999987


Q ss_pred             CCe---eEEEeecCCCCeEEEEEeCCCCeEEEEE--eCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE--
Q 004207          629 PDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--  701 (768)
Q Consensus       629 ~~~---~~~~~~~h~~~V~slafsp~g~~lLaSg--s~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags--  701 (768)
                      ++.   .+.....|...|.+++|+|.+..+++++  +.|++|++||++++.++..+..+..+.++.|++++..+++++  
T Consensus       262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~  341 (420)
T 4gga_A          262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF  341 (420)
T ss_dssp             CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECT
T ss_pred             ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEec
Confidence            653   3567788999999999999988888764  579999999999999999999999999999999999998876  


Q ss_pred             cCCeEEEEECCCceEeeec
Q 004207          702 IENYISILDVETQVCRLKL  720 (768)
Q Consensus       702 ~Dg~I~IwD~~t~~~~~~~  720 (768)
                      .|+.|+|||+.++.++..+
T Consensus       342 ~d~~I~iwd~~~~~~v~~l  360 (420)
T 4gga_A          342 AQNQLVIWKYPTMAKVAEL  360 (420)
T ss_dssp             TTCCEEEEETTTCCEEEEE
T ss_pred             CCCEEEEEECCCCcEEEEE
Confidence            6899999999988776554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.88  E-value=8.7e-21  Score=207.13  Aligned_cols=198  Identities=11%  Similarity=0.137  Sum_probs=170.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEE
Q 004207          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (768)
Q Consensus       568 ~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~L-aTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sl  646 (768)
                      .++++++.|+.|++||+.+++++..+..|. .+.+++|+|++++| ++++.|++|++||+.+++. +..+..+. .+.++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-~~~~~~~~-~v~~~   79 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGV   79 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-EEEEECCC-Cccce
Confidence            367888999999999999999999888775 48999999999976 6777899999999998765 55555444 89999


Q ss_pred             EEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEE-EEEEcCCeEEEEECCCceEeeecc----
Q 004207          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI-LAAAIENYISILDVETQVCRLKLQ----  721 (768)
Q Consensus       647 afsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~l-lags~Dg~I~IwD~~t~~~~~~~~----  721 (768)
                      +|+|+++.++++++.++.|++||+.+++.+..+..+..+.+++|+|++.++ ++++.++.|++||+.++.....+.    
T Consensus        80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~  159 (391)
T 1l0q_A           80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS  159 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS
T ss_pred             EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC
Confidence            999999988888888899999999999999999888889999999999987 566679999999998765543322    


Q ss_pred             ---------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE---CCCcEEEeC
Q 004207          722 ---------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS---HDKCVKIWK  768 (768)
Q Consensus       722 ---------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs---~DG~V~IWD  768 (768)
                                           .|.+||+.+++......+...+.+++|+|++.+|++++   .|+.|++||
T Consensus       160 ~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d  230 (391)
T 1l0q_A          160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID  230 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred             cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEE
Confidence                                 68999999888877667778899999999999999888   689999996

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.87  E-value=8.6e-21  Score=204.91  Aligned_cols=160  Identities=10%  Similarity=0.095  Sum_probs=130.8

Q ss_pred             EEEecCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEeccCC---CCEEEEEEcCCCCEE---------
Q 004207          548 FQLIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT---QWITDVRFSPSLSRL---------  612 (768)
Q Consensus       548 ~~~l~~H~~~I~sl~fSp---dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~---~~V~sl~fspdg~~L---------  612 (768)
                      +..+.+|...++.++|++   ++.+||+++.|++|+|||+++++++.++.+|.   ..|.+++|+|++.++         
T Consensus       171 ~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~  250 (356)
T 2w18_A          171 KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK  250 (356)
T ss_dssp             EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----
T ss_pred             eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCc
Confidence            445668999999999999   77999999999999999999999999998654   367888999999876         


Q ss_pred             ---EEEeCCCcEEEEECCCCCeeEEEe-----ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-C
Q 004207          613 ---ATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-S  683 (768)
Q Consensus       613 ---aTgs~DgtIrVWDl~t~~~~~~~~-----~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-~  683 (768)
                         ++|+.|++|++||..+++. +..+     .+|...+.+.+++   ..++++++.|++|+|||+.+++++.++..+ .
T Consensus       251 w~laSGs~D~tIklWd~~tgk~-l~v~~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~  326 (356)
T 2w18_A          251 ESESLRSPVFQLIVINPKTTLS-VGVMLYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQCTALLPPVSD  326 (356)
T ss_dssp             -------CCEEEEEEETTTTEE-EEEEEECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCSEEEEECCC--
T ss_pred             ceeeccCCCcEEEEEECCCCEE-EEEEEeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCCcEEEEecCCCC
Confidence               5688899999999998765 3333     3676666555555   347889999999999999999999999854 3


Q ss_pred             C-eeEEEEecCCCEEEEEEcCCeEEEEEC
Q 004207          684 G-ATQMRFQPRLGRILAAAIENYISILDV  711 (768)
Q Consensus       684 ~-i~sl~fsp~~~~llags~Dg~I~IwD~  711 (768)
                      . +..++|+|++.+|++|+.|++|+|||+
T Consensus       327 ~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          327 QHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            3 446899999999999999999999985

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.86  E-value=5.1e-20  Score=213.23  Aligned_cols=242  Identities=10%  Similarity=0.056  Sum_probs=193.1

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      .+.++++++.|++|.+|+....                   +.+..+..+.. +.+++|+|||++|++++.|++|.+||+
T Consensus       148 ~~~~~vs~~~d~~V~v~D~~t~-------------------~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~  207 (543)
T 1nir_A          148 PNLFSVTLRDAGQIALVDGDSK-------------------KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDL  207 (543)
T ss_dssp             GGEEEEEEGGGTEEEEEETTTC-------------------CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred             CCEEEEEEcCCCeEEEEECCCc-------------------eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEEC
Confidence            4567888999999999954322                   22344443333 899999999999999999999999999


Q ss_pred             --CCCeEEEEeccCCCCEEEEEEcC----CCCEEEEEeC-CCcEEEEECCCCCeeEEEeec----------C-CCCeEEE
Q 004207          585 --ESFTVKSTLEEHTQWITDVRFSP----SLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------H-STTVMSL  646 (768)
Q Consensus       585 --~t~~~~~tl~~h~~~V~sl~fsp----dg~~LaTgs~-DgtIrVWDl~t~~~~~~~~~~----------h-~~~V~sl  646 (768)
                        .+++++.++.. ...+..++|+|    ++++|++++. +++|.|||..+.+. +..+..          | ...+.++
T Consensus       208 ~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~~~~~~~v~~i  285 (543)
T 1nir_A          208 WAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAI  285 (543)
T ss_dssp             TSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEE
T ss_pred             cCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCcccCccccccCCceEEE
Confidence              88999888874 45689999999    9999999885 89999999998775 444443          2 2378999


Q ss_pred             EEeCCCCeEEEEEeCCCcEEEEECCCCeeEE--EEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeec---
Q 004207          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKL---  720 (768)
Q Consensus       647 afsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~--~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~---  720 (768)
                      .++|++..+++++..++.|.+||+.+.+.+.  .+.....+..+.|+|+++++++++ .+++|.+||..++++...+   
T Consensus       286 ~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g  365 (543)
T 1nir_A          286 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG  365 (543)
T ss_dssp             EECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             EECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC
Confidence            9999999999999999999999998866544  555556688899999999888776 5889999999887543321   


Q ss_pred             ---------------------------ceeEEeecCC-------CceE-EeccCCCCeeEEEEeCCCCEEEEEE------
Q 004207          721 ---------------------------QTLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASAS------  759 (768)
Q Consensus       721 ---------------------------~~I~iwd~~~-------~~~~-~l~~H~~~I~sla~spdg~~LaSgs------  759 (768)
                                                 .+|.+||..+       .+++ ++..|...+..|+|+|++++|++++      
T Consensus       366 ~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~  445 (543)
T 1nir_A          366 KTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA  445 (543)
T ss_dssp             SSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSH
T ss_pred             CCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCc
Confidence                                       1677888876       4444 6667888889999999999999987      


Q ss_pred             -CCCcEEEeC
Q 004207          760 -HDKCVKIWK  768 (768)
Q Consensus       760 -~DG~V~IWD  768 (768)
                       .+++|.|||
T Consensus       446 ~~~~~v~v~d  455 (543)
T 1nir_A          446 RISQSVAVFD  455 (543)
T ss_dssp             HHHTCEEEEE
T ss_pred             ccCceEEEEE
Confidence             277999997

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.86  E-value=5.9e-20  Score=205.08  Aligned_cols=199  Identities=19%  Similarity=0.172  Sum_probs=158.4

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCCc--EE
Q 004207          549 QLIPASTSKVESCHFSPDGKLLATGGHDK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--VR  622 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg---~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~La-Tgs~Dgt--Ir  622 (768)
                      ..+.+|...|.+++|+|||++|++++.|+   .|++||+.+++.. .+..|...+.+++|+||+++|+ +++.|+.  |+
T Consensus       172 ~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~  250 (415)
T 2hqs_A          172 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  250 (415)
T ss_dssp             EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEE
Confidence            34557888999999999999999999885   9999999998876 5667888999999999999887 6666664  99


Q ss_pred             EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEE
Q 004207          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA  700 (768)
Q Consensus       623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg--~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llag  700 (768)
                      +||+++++  ...+..|...+.+++|+|+|+.+++++..++  .|++||+.+++..........+.+++|+|++.+|+++
T Consensus       251 ~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~  328 (415)
T 2hqs_A          251 VMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMV  328 (415)
T ss_dssp             EEETTTCC--EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEE
T ss_pred             EEECCCCC--EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEE
Confidence            99998866  3567778889999999999987776665555  6777899887754433344568899999999999888


Q ss_pred             EcC---CeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC---cEEEeC
Q 004207          701 AIE---NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK---CVKIWK  768 (768)
Q Consensus       701 s~D---g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG---~V~IWD  768 (768)
                      +.+   ..|++||+.++.                 ...+..|. .+.+++|+|++.+|++++.|+   .|++||
T Consensus       329 ~~~~g~~~i~~~d~~~~~-----------------~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d  384 (415)
T 2hqs_A          329 SSNGGQQHIAKQDLATGG-----------------VQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVS  384 (415)
T ss_dssp             EECSSCEEEEEEETTTCC-----------------EEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             ECcCCceEEEEEECCCCC-----------------EEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence            865   457777766543                 33333454 789999999999999988877   688885

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.84  E-value=2e-19  Score=185.90  Aligned_cols=222  Identities=14%  Similarity=0.096  Sum_probs=163.1

Q ss_pred             EeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-Ce
Q 004207          510 DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FT  588 (768)
Q Consensus       510 atGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t-~~  588 (768)
                      ..++.|+.|++|.....                    ....+..|...|.+++|+|++++|++++ ++.|++||+.+ ++
T Consensus        16 ~~~~~~~~i~~~d~~~~--------------------~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~   74 (297)
T 2ojh_A           16 PGGSMRSSIEIFNIRTR--------------------KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS   74 (297)
T ss_dssp             --CCCCEEEEEEETTTT--------------------EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS
T ss_pred             CCCCcceeEEEEeCCCC--------------------ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC
Confidence            34567888888854322                    1223445788999999999999999986 78999999998 88


Q ss_pred             EEEEeccC-CCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcE
Q 004207          589 VKSTLEEH-TQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (768)
Q Consensus       589 ~~~tl~~h-~~~V~sl~fspdg~~LaTgs~--DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I  665 (768)
                      ....+..| ...|.+++|+|++++|++++.  ++.++||.++........+..+ ..+.+++|+|+++.+++++..++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~  153 (297)
T 2ojh_A           75 PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVF  153 (297)
T ss_dssp             CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEE
T ss_pred             ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCce
Confidence            77666565 367899999999999999983  3555665553222224444444 3589999999999888788889999


Q ss_pred             EEEEC--CCCeeEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCC
Q 004207          666 RYWSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKL  742 (768)
Q Consensus       666 ~iWDl--~sg~~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~  742 (768)
                      ++|++  .++...........+.+++|+|++.++++++ .++.+.+|++..               ..+....+..|...
T Consensus       154 ~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~---------------~~~~~~~~~~~~~~  218 (297)
T 2ojh_A          154 DIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV---------------DGSSVERITDSAYG  218 (297)
T ss_dssp             EEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET---------------TSSCEEECCCCSEE
T ss_pred             EEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECC---------------CCCCcEEEecCCcc
Confidence            99985  4455444344456789999999999888777 478888887642               12223344567778


Q ss_pred             eeEEEEeCCCCEEEEEECC-----------CcEEEeC
Q 004207          743 VSSLAASTVNGMVASASHD-----------KCVKIWK  768 (768)
Q Consensus       743 I~sla~spdg~~LaSgs~D-----------G~V~IWD  768 (768)
                      +.+++|+|++++|++++.+           +.|++||
T Consensus       219 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d  255 (297)
T 2ojh_A          219 DWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMD  255 (297)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred             cCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEe
Confidence            8999999999999988876           4588885

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.83  E-value=4.9e-18  Score=180.87  Aligned_cols=242  Identities=11%  Similarity=0.097  Sum_probs=177.1

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEE
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWC  583 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~-Dg~I~VWd  583 (768)
                      ...++++++.++.|.+|+.....                   ....+..+...+ +++|+|++++|++++. ++.|.+||
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~~-------------------~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d   68 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTLE-------------------ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIE   68 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTCC-------------------EEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEE
T ss_pred             CCEEEEEecCCCeEEEEeCcccc-------------------eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEE
Confidence            35567888899999999653321                   122333445556 9999999997766655 88999999


Q ss_pred             CCCCeE-EEEeccCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEE
Q 004207          584 TESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (768)
Q Consensus       584 l~t~~~-~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg---tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSg  659 (768)
                      +.+++. ...+..+..++.+++|+|++++|+++..++   .|++||+++++. +..+.. ...+.+++|+|+++.+++++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~  146 (331)
T 3u4y_A           69 TQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIPI-PYDAVGIAISPNGNGLILID  146 (331)
T ss_dssp             CSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE-EEEEEC-CTTEEEEEECTTSSCEEEEE
T ss_pred             CCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe-EEEEEC-CCCccceEECCCCCEEEEEe
Confidence            999887 777777766666699999999999655553   899999998764 455543 45579999999998888887


Q ss_pred             eCCCc-EEEEECCCCeeE-----EEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceE---eeecc--------
Q 004207          660 DNNSE-IRYWSINNGSCA-----GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVC---RLKLQ--------  721 (768)
Q Consensus       660 s~Dg~-I~iWDl~sg~~i-----~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~---~~~~~--------  721 (768)
                      ..++. |.+|++.....+     ..+.....+..++|+|++.++++++ .++.|.+||+.++..   ...+.        
T Consensus       147 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~  226 (331)
T 3u4y_A          147 RSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTI  226 (331)
T ss_dssp             ETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCE
T ss_pred             cCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceE
Confidence            77788 999998754332     2233456688999999999777666 588999999987765   33322        


Q ss_pred             -----------------eeEEeecCCCceEEe---ccC----CC---CeeEEEEeCCCCEEEEEEC-CCcEEEeC
Q 004207          722 -----------------TLELWNMTENKTLTL---SAH----DK---LVSSLAASTVNGMVASASH-DKCVKIWK  768 (768)
Q Consensus       722 -----------------~I~iwd~~~~~~~~l---~~H----~~---~I~sla~spdg~~LaSgs~-DG~V~IWD  768 (768)
                                       .|.+||..+++...+   ..+    ..   .+..++|+|++++|++++. ++.|+|||
T Consensus       227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d  301 (331)
T 3u4y_A          227 VVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT  301 (331)
T ss_dssp             EECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence                             678899888776211   111    11   2355899999998876665 66999996

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.82  E-value=4.4e-19  Score=198.06  Aligned_cols=200  Identities=10%  Similarity=0.054  Sum_probs=156.0

Q ss_pred             EEecCCCCCeEEEEEcC--------------CCCEEEEEeCC------CcEEEEECCCCeEEEEeccCCCCEEEEEEcCC
Q 004207          549 QLIPASTSKVESCHFSP--------------DGKLLATGGHD------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPS  608 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSp--------------dg~~LaSgs~D------g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd  608 (768)
                      ..+.+|...+.++++++              .+..|+.++.+      +.|++||++. .....+..|...|.+++|+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd  189 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD  189 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC
Confidence            34567777777777664              25566665554      7999999975 455677789999999999999


Q ss_pred             CCEEEEEeCCC---cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc--EEEEECCCCeeEEEEecCC
Q 004207          609 LSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQS  683 (768)
Q Consensus       609 g~~LaTgs~Dg---tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~--I~iWDl~sg~~i~~~~~~~  683 (768)
                      +++|++++.|+   .|++||+++++.  ..+..|...+.+++|+|+|+.++++++.++.  |++||++++++.....+..
T Consensus       190 g~~la~~s~~~~~~~i~~~d~~tg~~--~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~  267 (415)
T 2hqs_A          190 GSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS  267 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCE--EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSS
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCcE--EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCC
Confidence            99999999885   999999998764  3566788899999999999988878876655  9999999888755444566


Q ss_pred             CeeEEEEecCCCEEEEEEcC-C--eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 004207          684 GATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH  760 (768)
Q Consensus       684 ~i~sl~fsp~~~~llags~D-g--~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~  760 (768)
                      .+.+++|+|++.+|++++.+ +  .|++||+.++.                 ...+..|...+.+++|+|++++|++++.
T Consensus       268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~-----------------~~~l~~~~~~~~~~~~spdG~~l~~~~~  330 (415)
T 2hqs_A          268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-----------------PQRITWEGSQNQDADVSSDGKFMVMVSS  330 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-----------------CEECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred             cccceEECCCCCEEEEEECCCCCcEEEEEECCCCC-----------------EEEEecCCCcccCeEECCCCCEEEEEEC
Confidence            78999999999999888864 4  46666665543                 2333456677899999999999998886


Q ss_pred             C---CcEEEeC
Q 004207          761 D---KCVKIWK  768 (768)
Q Consensus       761 D---G~V~IWD  768 (768)
                      +   ..|++||
T Consensus       331 ~~g~~~i~~~d  341 (415)
T 2hqs_A          331 NGGQQHIAKQD  341 (415)
T ss_dssp             CSSCEEEEEEE
T ss_pred             cCCceEEEEEE
Confidence            4   5788886

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.81  E-value=9.9e-18  Score=194.01  Aligned_cols=274  Identities=9%  Similarity=0.096  Sum_probs=199.8

Q ss_pred             cCCCCCceEEEEecCCCC-------cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEE
Q 004207          476 HNGASSKSLLMFGSDGMG-------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEF  548 (768)
Q Consensus       476 ~s~s~~~~~l~~~~~~~~-------~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~  548 (768)
                      .++..+..+.+|......       ........+++.++++++++.|+.|.+|+....                 +...+
T Consensus       153 vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~-----------------t~~~~  215 (543)
T 1nir_A          153 VTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAK-----------------EPTKV  215 (543)
T ss_dssp             EEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSS-----------------SCEEE
T ss_pred             EEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCC-----------------CCcEE
Confidence            334455666666654321       112335567888999999999999999965200                 11233


Q ss_pred             EEecCCCCCeEEEEEcC----CCCEEEEEeC-CCcEEEEECCCCeEEEEeccC-----------CCCEEEEEEcCCCC-E
Q 004207          549 QLIPASTSKVESCHFSP----DGKLLATGGH-DKKAVLWCTESFTVKSTLEEH-----------TQWITDVRFSPSLS-R  611 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSp----dg~~LaSgs~-Dg~I~VWdl~t~~~~~tl~~h-----------~~~V~sl~fspdg~-~  611 (768)
                      ..+.. ...+.+++|+|    ||++|++++. +++|.|||..+++++.++..+           ...+.++.++|++. +
T Consensus       216 ~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~  294 (543)
T 1nir_A          216 AEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  294 (543)
T ss_dssp             EEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             EEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence            44443 44579999999    9999998874 899999999999999887642           23789999999765 5


Q ss_pred             EEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-----CCee
Q 004207          612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGAT  686 (768)
Q Consensus       612 LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-----~~i~  686 (768)
                      +++...+++|.+||+.+.+........+...+.++.|+|+++++++++..+++|.+||+.+++++..+...     +...
T Consensus       295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~  374 (543)
T 1nir_A          295 IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA  374 (543)
T ss_dssp             EEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCE
T ss_pred             EEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCc
Confidence            56677889999999987664332233466778999999999988888888999999999999999888742     1122


Q ss_pred             EEEEecCCCEEEEEE--cCCeEEEEECCC-------ceEeeecc--------------------------------eeEE
Q 004207          687 QMRFQPRLGRILAAA--IENYISILDVET-------QVCRLKLQ--------------------------------TLEL  725 (768)
Q Consensus       687 sl~fsp~~~~llags--~Dg~I~IwD~~t-------~~~~~~~~--------------------------------~I~i  725 (768)
                      .+ ++|+++.+++.+  .|++|.+||+.+       .+++..+.                                +|.+
T Consensus       375 ~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v  453 (543)
T 1nir_A          375 NF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV  453 (543)
T ss_dssp             EE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEE
T ss_pred             cc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEE
Confidence            22 578766665554  479999999987       43322221                                7889


Q ss_pred             eecCCCceE-Ee---------ccCCCCeeEEEEeCCCCEEEEEE-----CCCcEEEeC
Q 004207          726 WNMTENKTL-TL---------SAHDKLVSSLAASTVNGMVASAS-----HDKCVKIWK  768 (768)
Q Consensus       726 wd~~~~~~~-~l---------~~H~~~I~sla~spdg~~LaSgs-----~DG~V~IWD  768 (768)
                      ||+.+.+.. ..         ..+...|..++|+|+|++|+++.     .|+.|.|||
T Consensus       454 ~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D  511 (543)
T 1nir_A          454 FDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD  511 (543)
T ss_dssp             EETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred             EECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence            998877654 32         35567899999999999888763     479999997

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.81  E-value=6.5e-18  Score=179.52  Aligned_cols=238  Identities=12%  Similarity=0.170  Sum_probs=167.6

Q ss_pred             CccccCCCCEEEeecCC-CcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC-C
Q 004207          499 PNQLTDMDRFVDDGSLD-DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-D  576 (768)
Q Consensus       499 ~~~l~~~~~~latGS~D-~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~-D  576 (768)
                      ...+++.++++++++.+ +.|.+|.....               ...+..+..+..+. .+.+++|+|++++|++++. +
T Consensus        42 ~~~~spdg~~l~~~~~~~~~v~~~~~~~~---------------~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~  105 (343)
T 1ri6_A           42 PMVVSPDKRYLYVGVRPEFRVLAYRIAPD---------------DGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNA  105 (343)
T ss_dssp             CEEECTTSSEEEEEETTTTEEEEEEECTT---------------TCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTT
T ss_pred             eEEECCCCCEEEEeecCCCeEEEEEecCC---------------CCceeeccccccCC-CCcEEEEcCCCCEEEEEecCC
Confidence            44566777877777766 89999965311               11123334444444 7899999999998877665 8


Q ss_pred             CcEEEEEC---CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCC-CCeeE-E--Eeec-CCCCeEEEE
Q 004207          577 KKAVLWCT---ESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN-PDYSL-R--TFTG-HSTTVMSLD  647 (768)
Q Consensus       577 g~I~VWdl---~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVWDl~t-~~~~~-~--~~~~-h~~~V~sla  647 (768)
                      +.|.+||+   .+.+.+..+..+ ..+.+++|+|++++|++++ .++.|++||+.+ ++... .  .+.. ....+.+++
T Consensus       106 ~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (343)
T 1ri6_A          106 GNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMV  184 (343)
T ss_dssp             TEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEE
T ss_pred             CeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEE
Confidence            88999999   444555555544 4589999999999888887 899999999987 44321 1  2222 345788999


Q ss_pred             EeCCCCeEEEEEeCCCcEEEEECCC--Cee--EEEEec-------CCCeeEEEEecCCCEEEEEE-cCCeEEEEECCC--
Q 004207          648 FHPSKEDLLCSCDNNSEIRYWSINN--GSC--AGVFKC-------QSGATQMRFQPRLGRILAAA-IENYISILDVET--  713 (768)
Q Consensus       648 fsp~g~~lLaSgs~Dg~I~iWDl~s--g~~--i~~~~~-------~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t--  713 (768)
                      |+|+++.+++++..++.|.+||+..  ++.  ...+..       ...+..++|+|++.+++++. .++.|.+||+..  
T Consensus       185 ~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~  264 (343)
T 1ri6_A          185 FHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG  264 (343)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCC
Confidence            9999998888887899999999953  433  222221       12456799999999888666 689999999873  


Q ss_pred             ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 004207          714 QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK  768 (768)
Q Consensus       714 ~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~IWD  768 (768)
                      +....              ...+..+.. +.+++|+|++++|++++ .|+.|.||+
T Consensus       265 ~~~~~--------------~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~  305 (343)
T 1ri6_A          265 SVLSK--------------EGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYE  305 (343)
T ss_dssp             CCEEE--------------EEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             CceEE--------------eeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEE
Confidence            21110              011222333 88999999999888888 689999993

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.80  E-value=2.7e-18  Score=177.34  Aligned_cols=230  Identities=11%  Similarity=0.079  Sum_probs=164.3

Q ss_pred             ccCccccCCCCEEEeecCCCcEEEeecCC-CCCCCCccccccccCCCceeeEEEEecCC-CCCeEEEEEcCCCCEEEEEe
Q 004207          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPD-DADPRDRVGRSAEVGKGFTFTEFQLIPAS-TSKVESCHFSPDGKLLATGG  574 (768)
Q Consensus       497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~l~~H-~~~I~sl~fSpdg~~LaSgs  574 (768)
                      +....+.+.+.++++++ ++.|.+|.... ..                   ....+..| ...|.+++|+||+++|++++
T Consensus        44 v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-------------------~~~~~~~~~~~~~~~~~~spdg~~l~~~~  103 (297)
T 2ojh_A           44 FEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-------------------PEKVDTGFATICNNDHGISPDGALYAISD  103 (297)
T ss_dssp             CEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-------------------CEECCCTTCCCBCSCCEECTTSSEEEEEE
T ss_pred             eEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-------------------ceEeccccccccccceEECCCCCEEEEEE
Confidence            34455677788888876 78899996543 21                   11222333 46789999999999999998


Q ss_pred             --CCCcEEEE--ECCCCeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEe
Q 004207          575 --HDKKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH  649 (768)
Q Consensus       575 --~Dg~I~VW--dl~t~~~~~tl~~h~~~V~sl~fspdg~~La-Tgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafs  649 (768)
                        .++.+.||  ++.+++ ...+..+ ..+.+++|+|++++|+ +++.|+.++||+++........+..|...+.+++|+
T Consensus       104 ~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s  181 (297)
T 2ojh_A          104 KVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYS  181 (297)
T ss_dssp             CTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEEC
T ss_pred             eCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceEC
Confidence              33445554  555554 3444444 3489999999999877 788899999999754333356677788899999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECC-CCeeEEEEec-CCCeeEEEEecCCCEEEEEEcC-----------CeEEEEECCCceE
Q 004207          650 PSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE-----------NYISILDVETQVC  716 (768)
Q Consensus       650 p~g~~lLaSgs~Dg~I~iWDl~-sg~~i~~~~~-~~~i~sl~fsp~~~~llags~D-----------g~I~IwD~~t~~~  716 (768)
                      |++..+++++..++.+++|++. .+..+..+.. ...+..++|+|++.+|++++.+           +.|++||+.++..
T Consensus       182 ~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          182 PDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             CCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence            9998777777778999999886 4444454443 4457889999999999888865           3466777665432


Q ss_pred             eeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 004207          717 RLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK  762 (768)
Q Consensus       717 ~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG  762 (768)
                      ..              +..+.+|...|.+++|+|++.+|++++.|.
T Consensus       262 ~~--------------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          262 ET--------------LFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EE--------------EEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             ee--------------eeccCCCCcccccceECCCCCEEEEEEecc
Confidence            10              123346788899999999999998887654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.79  E-value=2.9e-18  Score=192.91  Aligned_cols=205  Identities=12%  Similarity=0.107  Sum_probs=145.0

Q ss_pred             ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEE----EEeCCC
Q 004207          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA----TGGHDK  577 (768)
Q Consensus       502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~La----Sgs~Dg  577 (768)
                      +.....++++++.|+ +++|............   .+............ ..|...|++++|+|++++|+    +|+.|+
T Consensus        44 vs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~lav~~~sgs~d~  118 (434)
T 2oit_A           44 VSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG---DDPNKIVDKVQGLL-VPMKFPIHHLALSCDNLTLSACMMSSEYGS  118 (434)
T ss_dssp             EETTTTEEEEEETTE-EEEEEHHHHCCCCCTT---CCTTCEEECCCCEE-ECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred             EecCCCEEEEECCCE-EEEEEchHhhhhcccc---cCcccccccCcccc-ccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence            344567888888887 8887332110000000   00000000011111 24677899999999999999    788899


Q ss_pred             cEEEEECCCC--------e---EEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEE
Q 004207          578 KAVLWCTESF--------T---VKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  645 (768)
Q Consensus       578 ~I~VWdl~t~--------~---~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~s  645 (768)
                      .|+|||+.+.        +   .+..+.+|...|.+|+|+|+ +.+|++++.||+|+|||++++.. +....+|...|.+
T Consensus       119 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-~~~~~~~~~~v~~  197 (434)
T 2oit_A          119 IIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-VCATLPSTVAVTS  197 (434)
T ss_dssp             EEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-EEEEECGGGCEEE
T ss_pred             eEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-eeeccCCCCceeE
Confidence            9999998654        2   24556779999999999997 88999999999999999998744 5556678899999


Q ss_pred             EEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC--------CCeeEEEEecCCCEEEEEE-cCC------eEEEEE
Q 004207          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------SGATQMRFQPRLGRILAAA-IEN------YISILD  710 (768)
Q Consensus       646 lafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~--------~~i~sl~fsp~~~~llags-~Dg------~I~IwD  710 (768)
                      ++|+|+|. +|++|+.||.|++||++ +.....+..+        ..+.+++|++++.++++.+ .+|      .+++||
T Consensus       198 v~wspdg~-~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~  275 (434)
T 2oit_A          198 VCWSPKGK-QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMAL  275 (434)
T ss_dssp             EEECTTSS-CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEE
T ss_pred             EEEcCCCC-EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEE
Confidence            99999977 55688899999999998 5655555431        1688999999866655433 343      388999


Q ss_pred             CCCc
Q 004207          711 VETQ  714 (768)
Q Consensus       711 ~~t~  714 (768)
                      ++..
T Consensus       276 l~~~  279 (434)
T 2oit_A          276 LPKK  279 (434)
T ss_dssp             CCCT
T ss_pred             eccC
Confidence            8764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.79  E-value=2.4e-17  Score=174.66  Aligned_cols=238  Identities=14%  Similarity=0.111  Sum_probs=163.6

Q ss_pred             CEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEec-CCCC-CeEEEEEcCCCCEE-EEEeCCCcEEEEE
Q 004207          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTS-KVESCHFSPDGKLL-ATGGHDKKAVLWC  583 (768)
Q Consensus       507 ~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~-~H~~-~I~sl~fSpdg~~L-aSgs~Dg~I~VWd  583 (768)
                      .++++++.++.|.+|+....                   +.+..+. ++.. .+.+++|+|+++++ +++..++.|.+||
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d   62 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKM-------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID   62 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT-------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cEEEEcCCCCeEEEEECCCC-------------------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEE
Confidence            47888999999999964322                   1122222 2222 47889999999865 4556678999999


Q ss_pred             CCCCeEEEEeccC-----CCCEEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCCeeEEEeecCCCCeEEE
Q 004207          584 TESFTVKSTLEEH-----TQWITDVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (768)
Q Consensus       584 l~t~~~~~tl~~h-----~~~V~sl~fspdg~~LaTgs------------~DgtIrVWDl~t~~~~~~~~~~h~~~V~sl  646 (768)
                      +.+++.+..+...     ...+.+++|+|++++|++++            .++.|++||+.+++. +..+.. ...+.++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~  140 (337)
T 1pby_B           63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQITML  140 (337)
T ss_dssp             TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSCCCE
T ss_pred             CCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCccee
Confidence            9999888766532     12577899999999998886            579999999987654 444443 4568889


Q ss_pred             EEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCC----------------------
Q 004207          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN----------------------  704 (768)
Q Consensus       647 afsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg----------------------  704 (768)
                      +|+|+++.++++   ++.|.+||+.+++.+..+........+.|+|++..+++++..+                      
T Consensus       141 ~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (337)
T 1pby_B          141 AWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY  217 (337)
T ss_dssp             EECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred             EECCCCCEEEEe---CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccccc
Confidence            999999876655   6789999999998877665433112235566655443333211                      


Q ss_pred             --eEEEEECCCceEee------------------------ecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEE
Q 004207          705 --YISILDVETQVCRL------------------------KLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA  758 (768)
Q Consensus       705 --~I~IwD~~t~~~~~------------------------~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSg  758 (768)
                        .|.+||+.+++...                        ....|.+||+.+++..........+.+++|+|++++|+++
T Consensus       218 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  297 (337)
T 1pby_B          218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG  297 (337)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE
T ss_pred             ccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEeCCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEE
Confidence              34566655543210                        0014666666665554433344568899999999999999


Q ss_pred             ECCCcEEEeC
Q 004207          759 SHDKCVKIWK  768 (768)
Q Consensus       759 s~DG~V~IWD  768 (768)
                      +.|+.|++||
T Consensus       298 ~~~~~i~v~d  307 (337)
T 1pby_B          298 GALGDLAAYD  307 (337)
T ss_dssp             SBSSEEEEEE
T ss_pred             cCCCcEEEEE
Confidence            9999999996

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.78  E-value=1.4e-16  Score=170.33  Aligned_cols=185  Identities=12%  Similarity=0.124  Sum_probs=151.4

Q ss_pred             eEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 004207          558 VESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs--~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~  635 (768)
                      +.+++|+|+++++++++  .++.|.+||..+++.+..+..+...+.+++|+|++++|++++.++.|.+||+.+++. +..
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~-~~~  221 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI-LSR  221 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE-EEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE-EEE
Confidence            78999999999877776  478899999999999988876666789999999999999999999999999998765 433


Q ss_pred             eec----CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEE
Q 004207          636 FTG----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILD  710 (768)
Q Consensus       636 ~~~----h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD  710 (768)
                      +..    +...+.+++|+|+++.+++++..++.|.+||+.+++.+..+..... ..++|+|++++++++. .++.|.+||
T Consensus       222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          222 KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEE
Confidence            332    4556889999999998887877789999999999999888876544 6699999999877777 589999999


Q ss_pred             CCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207          711 VETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD  761 (768)
Q Consensus       711 ~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D  761 (768)
                      ..+++....+                 .....+.+++|+|++++|+++..+
T Consensus       301 ~~~~~~~~~~-----------------~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          301 AKSYKVVKTF-----------------DTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             TTTTEEEEEE-----------------ECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             CCCCeEEEEE-----------------ecCCCCCeEEEcCCCCEEEEEEcc
Confidence            9887653321                 122357899999999977776655

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.78  E-value=4.8e-17  Score=172.82  Aligned_cols=233  Identities=11%  Similarity=0.129  Sum_probs=162.0

Q ss_pred             EEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEECC-
Q 004207          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTE-  585 (768)
Q Consensus       508 ~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D-g~I~VWdl~-  585 (768)
                      ++++++.|+.|++|......                .+..+.. ..|...+.+++|+|++++|++++.+ +.|.+|+++ 
T Consensus         7 l~~~~~~~~~v~~~~~~~~~----------------~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~   69 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEG----------------ALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP   69 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTS----------------CEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEeCCCCCeEEEEEECCCC----------------cEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecC
Confidence            44555789999999653211                1112222 2466779999999999998888886 999999997 


Q ss_pred             -CCe--EEEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCC--eeEEEeecCCCCeEEEEEeCCCCeEEEEE
Q 004207          586 -SFT--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (768)
Q Consensus       586 -t~~--~~~tl~~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~t~~--~~~~~~~~h~~~V~slafsp~g~~lLaSg  659 (768)
                       +++  .+..+..+. .+.+++|+|++++|++++. ++.|++||++.+.  ..+..+. ....+.+++|+|+++.+++++
T Consensus        70 ~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~  147 (343)
T 1ri6_A           70 DDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPA  147 (343)
T ss_dssp             TTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEE
T ss_pred             CCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEec
Confidence             544  344555444 7899999999998877765 8899999995322  2233343 334689999999998787666


Q ss_pred             eCCCcEEEEECCC-CeeEEE----Ee--cCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCC--ceEeeecceeEEee-c
Q 004207          660 DNNSEIRYWSINN-GSCAGV----FK--CQSGATQMRFQPRLGRILAAA-IENYISILDVET--QVCRLKLQTLELWN-M  728 (768)
Q Consensus       660 s~Dg~I~iWDl~s-g~~i~~----~~--~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t--~~~~~~~~~I~iwd-~  728 (768)
                      ..++.|++||+.+ ++....    +.  ....+..++|+|++.++++++ .++.|.+||+..  +....    +.... +
T Consensus       148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~----~~~~~~~  223 (343)
T 1ri6_A          148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC----VQTLDMM  223 (343)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE----EEEEECS
T ss_pred             CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE----Eeecccc
Confidence            5899999999987 654332    22  244688899999999887766 789999999954  22110    11100 0


Q ss_pred             CCCceEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 004207          729 TENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK  768 (768)
Q Consensus       729 ~~~~~~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~IWD  768 (768)
                      ..+     ......+.+++|+|++++|++++ .|+.|++||
T Consensus       224 ~~~-----~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d  259 (343)
T 1ri6_A          224 PEN-----FSDTRWAADIHITPDGRHLYACDRTASLITVFS  259 (343)
T ss_dssp             CTT-----CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             Ccc-----ccccCCccceEECCCCCEEEEEecCCCEEEEEE
Confidence            000     01234577899999998887554 789999996

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.78  E-value=1.2e-18  Score=196.14  Aligned_cols=202  Identities=10%  Similarity=0.064  Sum_probs=150.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----------eEE-----EEeccCCCCEEEEEEcCCCCEEE----E
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----------TVK-----STLEEHTQWITDVRFSPSLSRLA----T  614 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~-----------~~~-----~tl~~h~~~V~sl~fspdg~~La----T  614 (768)
                      ...+.++++++++.+|++++.|+ |+||+....           ...     ..+ .+...|++++|+|++++|+    +
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence            34588999999999999999988 888864311           111     112 3566799999999999999    7


Q ss_pred             EeCCCcEEEEECCCC-----C-----eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCC
Q 004207          615 SSADRTVRVWDTENP-----D-----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQS  683 (768)
Q Consensus       615 gs~DgtIrVWDl~t~-----~-----~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~  683 (768)
                      ++.|++|+|||+++.     .     ..+..+.+|...|.+|+|+|+...+|++++.||+|++||++++..+.... +..
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~  193 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV  193 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence            888999999998653     1     12456677999999999999866788899999999999999887665444 356


Q ss_pred             CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEE-ECCC
Q 004207          684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA-SHDK  762 (768)
Q Consensus       684 ~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSg-s~DG  762 (768)
                      .+.+++|+|++.+|++++.|+.|++||++ +.....+.      ....   ....|...|.+++|++++.++++. +.||
T Consensus       194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~------~~~~---~~~~~~~~v~~v~w~~~~~~l~~~~~~dg  263 (434)
T 2oit_A          194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIP------CPPF---YESDHPVRVLDVLWIGTYVFAIVYAAADG  263 (434)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEEC------CCTT---CCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred             ceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccccccc------CCcc---cCCCCceeEEEEEEecCceEEEEEccCCC
Confidence            89999999999999999999999999998 32211110      0000   001344579999999988777553 3443


Q ss_pred             c------EEEeC
Q 004207          763 C------VKIWK  768 (768)
Q Consensus       763 ~------V~IWD  768 (768)
                      .      +++|+
T Consensus       264 ~~~~~~~v~i~~  275 (434)
T 2oit_A          264 TLETSPDVVMAL  275 (434)
T ss_dssp             CSSSCCEEEEEE
T ss_pred             ccCCCCceEEEE
Confidence            3      77774

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.77  E-value=3.9e-17  Score=174.18  Aligned_cols=224  Identities=11%  Similarity=0.066  Sum_probs=160.1

Q ss_pred             ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCC-CCeEEEEEcCCCCEEE-EEeCCCcE
Q 004207          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLA-TGGHDKKA  579 (768)
Q Consensus       502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~I~sl~fSpdg~~La-Sgs~Dg~I  579 (768)
                      +...+.++++++.++.|.+|+....                   +.+..+..+. ..+.+++|+|++++++ ++..++.|
T Consensus         7 ~~~~~~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i   67 (349)
T 1jmx_B            7 LKAGHEYMIVTNYPNNLHVVDVASD-------------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI   67 (349)
T ss_dssp             CCTTCEEEEEEETTTEEEEEETTTT-------------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred             ccCCCEEEEEeCCCCeEEEEECCCC-------------------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcE
Confidence            4556778899999999999965322                   1122222222 2578899999998655 55578999


Q ss_pred             EEEECCCCeEEEEeccCC------CCEEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCCe--eEEEeecC
Q 004207          580 VLWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSAD------------RTVRVWDTENPDY--SLRTFTGH  639 (768)
Q Consensus       580 ~VWdl~t~~~~~tl~~h~------~~V~sl~fspdg~~LaTgs~D------------gtIrVWDl~t~~~--~~~~~~~h  639 (768)
                      .+||+.+++.+..+..+.      ..+.+++|+|++++|++++.+            +.|.+||+.+++.  .+..+. +
T Consensus        68 ~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~  146 (349)
T 1jmx_B           68 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-M  146 (349)
T ss_dssp             EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-C
T ss_pred             EEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-C
Confidence            999999999887775432      237889999999999998865            8999999987432  123333 3


Q ss_pred             CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC------------------------------------
Q 004207          640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------------------------------------  683 (768)
Q Consensus       640 ~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~------------------------------------  683 (768)
                      ...+.+++|+|+++ +++ ++  +.|++||+.+++.+..+....                                    
T Consensus       147 ~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  222 (349)
T 1jmx_B          147 PRQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD  222 (349)
T ss_dssp             CSSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred             CCcccceeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence            44689999999998 665 43  349999999988777665331                                    


Q ss_pred             ---------------------------------CeeEEEEec-CCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecC
Q 004207          684 ---------------------------------GATQMRFQP-RLGRILAAAIENYISILDVETQVCRLKLQTLELWNMT  729 (768)
Q Consensus       684 ---------------------------------~i~sl~fsp-~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~  729 (768)
                                                       .+..++|+| ++.+++++  ++.|.+||+.+++....          
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~----------  290 (349)
T 1jmx_B          223 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA----------  290 (349)
T ss_dssp             ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE----------
T ss_pred             cCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE----------
Confidence                                             223455667 77776666  67777777766544221          


Q ss_pred             CCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          730 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       730 ~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                             ......+.+++|+|++++|++++.++.|++||
T Consensus       291 -------~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d  322 (349)
T 1jmx_B          291 -------ANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFN  322 (349)
T ss_dssp             -------EECSSCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred             -------EcCCCCccceEECCCCCEEEEecCCCeEEEEe
Confidence                   11233478999999999888888899999996

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.77  E-value=1.3e-16  Score=171.64  Aligned_cols=238  Identities=13%  Similarity=0.143  Sum_probs=161.8

Q ss_pred             ccccCCCCEEEeecC--CCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe-CC
Q 004207          500 NQLTDMDRFVDDGSL--DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HD  576 (768)
Q Consensus       500 ~~l~~~~~~latGS~--D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs-~D  576 (768)
                      ..+++.+++++++..  ++.|.+|....                 .....+..+..+...+.+++|+|||++|++++ .+
T Consensus        45 ~a~spdg~l~~~~~~~~~~~v~~~~~~~-----------------g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~  107 (347)
T 3hfq_A           45 LALSAKDCLYSVDKEDDEGGIAAWQIDG-----------------QTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK  107 (347)
T ss_dssp             EEECTTCEEEEEEEETTEEEEEEEEEET-----------------TEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTT
T ss_pred             EEEccCCeEEEEEecCCCceEEEEEecC-----------------CcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC
Confidence            344555554333332  57788885421                 12234444456677899999999999888887 67


Q ss_pred             CcEEEEECC-CC--eEEEEecc---------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCCee-EEEeec-CCC
Q 004207          577 KKAVLWCTE-SF--TVKSTLEE---------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPDYS-LRTFTG-HST  641 (768)
Q Consensus       577 g~I~VWdl~-t~--~~~~tl~~---------h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~-t~~~~-~~~~~~-h~~  641 (768)
                      +.|.+|++. ++  +.+..+..         +...+.+++|+|+++++++...++.|++||+. ++... +..+.. ...
T Consensus       108 ~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~  187 (347)
T 3hfq_A          108 GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGF  187 (347)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTC
T ss_pred             CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCC
Confidence            899999996 22  33333322         12348899999999966666678899999998 44321 122222 234


Q ss_pred             CeEEEEEeCCCCeEEEEEeCCCcEEEEECCC--CeeE--EEEec-C------CCeeEEEEecCCCEEEEE-EcCCeEEEE
Q 004207          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCA--GVFKC-Q------SGATQMRFQPRLGRILAA-AIENYISIL  709 (768)
Q Consensus       642 ~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s--g~~i--~~~~~-~------~~i~sl~fsp~~~~llag-s~Dg~I~Iw  709 (768)
                      .+..++|+|+|+.+++++..++.|.+|++..  ++..  ..+.. .      ..+..++|+|++.+|+++ ..++.|.+|
T Consensus       188 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~  267 (347)
T 3hfq_A          188 GPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVF  267 (347)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEE
T ss_pred             CCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEE
Confidence            6788999999998888888899999999874  5432  22222 1      337789999999987555 458999999


Q ss_pred             ECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC-CcEEEe
Q 004207          710 DVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW  767 (768)
Q Consensus       710 D~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D-G~V~IW  767 (768)
                      |+........             ...+..+...+.+++|+|++++|++++.+ +.|.||
T Consensus       268 ~~~~~g~~~~-------------~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  313 (347)
T 3hfq_A          268 AVTADGHLTL-------------IQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY  313 (347)
T ss_dssp             EECGGGCEEE-------------EEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EECCCCcEEE-------------eEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence            9863211100             11233455668899999999998888764 899999

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.75  E-value=2.1e-16  Score=169.09  Aligned_cols=210  Identities=8%  Similarity=0.007  Sum_probs=163.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECC
Q 004207          556 SKVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTE  627 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~-------Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTg-s~DgtIrVWDl~  627 (768)
                      ..+..++|+|++++|++++.       ++.|.+||..+++.+..+... ..+.+++|+|++++++++ ..++.|.+||+.
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            45889999999998888774       568999999999988887643 447889999999965554 557999999999


Q ss_pred             CCCeeEEEeecCCC---------CeEEEEEeCCCCeEEEEE-eCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCE
Q 004207          628 NPDYSLRTFTGHST---------TVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGR  696 (768)
Q Consensus       628 t~~~~~~~~~~h~~---------~V~slafsp~g~~lLaSg-s~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~  696 (768)
                      +++. +..+..+..         .+.+++|+|+++.+++++ +.++.|.+||+.+++.+..+. ....+..++|+|++++
T Consensus       120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~  198 (353)
T 3vgz_A          120 TGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR  198 (353)
T ss_dssp             TCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred             CCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence            8775 444444332         278899999999777766 458899999999999998887 4555889999999999


Q ss_pred             EEEEEcCCeEEEEECCCceEeeecc------------------------------eeEEeecCCCceEEeccCCCCeeEE
Q 004207          697 ILAAAIENYISILDVETQVCRLKLQ------------------------------TLELWNMTENKTLTLSAHDKLVSSL  746 (768)
Q Consensus       697 llags~Dg~I~IwD~~t~~~~~~~~------------------------------~I~iwd~~~~~~~~l~~H~~~I~sl  746 (768)
                      +++++.++.|.+||+.+++....+.                              .|.+||..+++......... ..++
T Consensus       199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~  277 (353)
T 3vgz_A          199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-SLAV  277 (353)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCE
T ss_pred             EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-CceE
Confidence            9999999999999998775432211                              67778887776653322222 3579


Q ss_pred             EEeCCCCEEEEEE-CCCcEEEeC
Q 004207          747 AASTVNGMVASAS-HDKCVKIWK  768 (768)
Q Consensus       747 a~spdg~~LaSgs-~DG~V~IWD  768 (768)
                      +|+|++++|++++ .++.|.+||
T Consensus       278 ~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          278 LFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCCEEEEEECCCCeEEEEE
Confidence            9999999766665 689999996

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.75  E-value=3.7e-17  Score=194.43  Aligned_cols=209  Identities=14%  Similarity=0.125  Sum_probs=163.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC-CC-----cEEEEECCCCeEEEEeccCCC------------------------CEEEEE
Q 004207          555 TSKVESCHFSPDGKLLATGGH-DK-----KAVLWCTESFTVKSTLEEHTQ------------------------WITDVR  604 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~-Dg-----~I~VWdl~t~~~~~tl~~h~~------------------------~V~sl~  604 (768)
                      ...|.+++|||||++|++++. |+     .|++||+.+++....+..+..                        .|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456999999999999999998 88     899999999988777655433                        378999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCC--eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC
Q 004207          605 FSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ  682 (768)
Q Consensus       605 fspdg~~LaTgs~DgtIrVWDl~t~~--~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~  682 (768)
                      |+|||++|++++. +.|++||+.++.  . +..+..|...+.+++|+|+|+.+++ ++ ++.|++||+.+++........
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~-~~~l~~~~~~~~~~~~SPDG~~la~-~~-~~~i~~~d~~~g~~~~~~~~~  191 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAA-VRQLTHGEGFATDAKLSPKGGFVSF-IR-GRNLWVIDLASGRQMQLTADG  191 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTS-CCBCCCSSSCEEEEEECTTSSEEEE-EE-TTEEEEEETTTTEEEECCCCC
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcce-EEEcccCCcccccccCCCCCCEEEE-Ee-CCcEEEEecCCCCEEEeccCC
Confidence            9999999999886 999999999862  2 4456678888999999999986654 44 569999999988776554432


Q ss_pred             CC-----------------eeEEEEecCCCEEEEEEcCC---------------------------------eEEEEECC
Q 004207          683 SG-----------------ATQMRFQPRLGRILAAAIEN---------------------------------YISILDVE  712 (768)
Q Consensus       683 ~~-----------------i~sl~fsp~~~~llags~Dg---------------------------------~I~IwD~~  712 (768)
                      ..                 +..++|+|++.+|++++.|+                                 .|.+||+.
T Consensus       192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~  271 (741)
T 2ecf_A          192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA  271 (741)
T ss_dssp             CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred             ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence            22                 47799999999999988765                                 78899987


Q ss_pred             C-ceEeee-------------------------------cceeEEeecCCCceEEec-cCCC----CeeEEEEeCCCCEE
Q 004207          713 T-QVCRLK-------------------------------LQTLELWNMTENKTLTLS-AHDK----LVSSLAASTVNGMV  755 (768)
Q Consensus       713 t-~~~~~~-------------------------------~~~I~iwd~~~~~~~~l~-~H~~----~I~sla~spdg~~L  755 (768)
                      + +.....                               ...|.+||..+++...+. .|..    .+.+++|+|+|++|
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~  351 (741)
T 2ecf_A          272 EQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSIL  351 (741)
T ss_dssp             TTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEE
T ss_pred             CCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEE
Confidence            7 432110                               125778888887765433 3322    45689999999999


Q ss_pred             EEEECCCcEEEe
Q 004207          756 ASASHDKCVKIW  767 (768)
Q Consensus       756 aSgs~DG~V~IW  767 (768)
                      ++++.||.++||
T Consensus       352 ~~~~~~g~~~l~  363 (741)
T 2ecf_A          352 WSSERTGFQHLY  363 (741)
T ss_dssp             EEECTTSSCEEE
T ss_pred             EEecCCCccEEE
Confidence            999999988887

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.75  E-value=1.1e-16  Score=190.39  Aligned_cols=207  Identities=13%  Similarity=0.092  Sum_probs=150.8

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~  634 (768)
                      .|.+++|||||++|++++. +.|++||+.++.  ....+..|...+.+++|+|||++|++++ ++.|++||+.+++. ..
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-~~  186 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-MQ  186 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-EE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-EE
Confidence            4889999999999999886 899999999872  3445667888899999999999999987 46899999987653 33


Q ss_pred             EeecCCCC----------------eEEEEEeCCCCeEEEEEeCCC--------------------------------cEE
Q 004207          635 TFTGHSTT----------------VMSLDFHPSKEDLLCSCDNNS--------------------------------EIR  666 (768)
Q Consensus       635 ~~~~h~~~----------------V~slafsp~g~~lLaSgs~Dg--------------------------------~I~  666 (768)
                      ....+...                +.+++|+|+|+.++++...++                                .|+
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            33333322                478999999987775543221                                788


Q ss_pred             EEECCC-CeeEEEEe---cCCCeeEEEEecCCCEEEEEEc-----CCeEEEEECCCceEeeec-----------------
Q 004207          667 YWSINN-GSCAGVFK---CQSGATQMRFQPRLGRILAAAI-----ENYISILDVETQVCRLKL-----------------  720 (768)
Q Consensus       667 iWDl~s-g~~i~~~~---~~~~i~sl~fsp~~~~llags~-----Dg~I~IwD~~t~~~~~~~-----------------  720 (768)
                      +||+.+ +++.....   +...+..++| |++.+|++++.     +..|++||+.++.+....                 
T Consensus       267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL  345 (741)
T ss_dssp             EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred             EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence            999998 87655432   2345789999 99999887765     467999998876432110                 


Q ss_pred             ------------ceeEEeec--CCCceEEeccCCCCeeEE-EEeCCCCEEEEE-ECCC--cEEEeC
Q 004207          721 ------------QTLELWNM--TENKTLTLSAHDKLVSSL-AASTVNGMVASA-SHDK--CVKIWK  768 (768)
Q Consensus       721 ------------~~I~iwd~--~~~~~~~l~~H~~~I~sl-a~spdg~~LaSg-s~DG--~V~IWD  768 (768)
                                  ..+++|.+  ... ...+..|...|.++ +|+|+++.|+.. +.|+  .++||+
T Consensus       346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~  410 (741)
T 2ecf_A          346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA  410 (741)
T ss_dssp             TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred             CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence                        02344543  334 55666777888887 599999877554 4455  888884

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.75  E-value=1.7e-16  Score=168.89  Aligned_cols=206  Identities=9%  Similarity=0.143  Sum_probs=156.7

Q ss_pred             EEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCeeEEEeec
Q 004207          561 CHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG  638 (768)
Q Consensus       561 l~fSpdg~~-LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~t~~~~~~~~~~  638 (768)
                      ..|.+++.+ +++++.++.|.+||+.+++.+..+..+...+ +++|+|++++|++++. ++.|++||+.+++.....+..
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            345565554 7788889999999999999988887776677 9999999997776666 889999999987753556666


Q ss_pred             CCCCeEEEEEeCCCCeEEEEEeCC-C--cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE-cCCe-EEEEECCC
Q 004207          639 HSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENY-ISILDVET  713 (768)
Q Consensus       639 h~~~V~slafsp~g~~lLaSgs~D-g--~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~-I~IwD~~t  713 (768)
                      +..++.+++|+|+++.++ ++..+ +  .|.+||+.+++.+..+........++|+|++.++++++ .++. |.+|++..
T Consensus        82 ~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             CSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             CCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence            666666699999998777 55444 3  89999999999999888878889999999998776665 4577 99999754


Q ss_pred             ceEe-----ee-------------------------cceeEEeecCCCce---EEeccCCCCeeEEEEeCCCCEEEEEE-
Q 004207          714 QVCR-----LK-------------------------LQTLELWNMTENKT---LTLSAHDKLVSSLAASTVNGMVASAS-  759 (768)
Q Consensus       714 ~~~~-----~~-------------------------~~~I~iwd~~~~~~---~~l~~H~~~I~sla~spdg~~LaSgs-  759 (768)
                      ....     ..                         ...|.+||+.+++.   .....+...+.+++|+|++++|++++ 
T Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECS
T ss_pred             CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEc
Confidence            2111     00                         01688999988776   54334556788999999999776665 


Q ss_pred             CCCcEEEeC
Q 004207          760 HDKCVKIWK  768 (768)
Q Consensus       760 ~DG~V~IWD  768 (768)
                      .++.|.+||
T Consensus       241 ~~~~i~~~d  249 (331)
T 3u4y_A          241 STVDVFNFN  249 (331)
T ss_dssp             SEEEEEEEE
T ss_pred             CCCEEEEEE
Confidence            577899886

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.73  E-value=1.2e-16  Score=189.38  Aligned_cols=243  Identities=12%  Similarity=0.084  Sum_probs=165.5

Q ss_pred             cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCC---CeEEEEEcCCCCEEEEEeCC---
Q 004207          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGHD---  576 (768)
Q Consensus       503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~---~I~sl~fSpdg~~LaSgs~D---  576 (768)
                      .+.+.++++ +.|++|++|....+.                   ....+..|..   .|.+++|||||++|++++.+   
T Consensus        25 spdg~~~~~-~~dg~i~~~d~~~g~-------------------~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~   84 (723)
T 1xfd_A           25 ISDTEFIYR-EQKGTVRLWNVETNT-------------------STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPI   84 (723)
T ss_dssp             SSSSCBCCC-CSSSCEEEBCGGGCC-------------------CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred             cCCCcEEEE-eCCCCEEEEECCCCc-------------------EEEEeccccccccccceEEECCCCCEEEEEecCccc
Confidence            334456655 678899999543221                   1233445554   49999999999999999775   


Q ss_pred             ------CcEEEEECCCCeEEEEec---cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCC-----
Q 004207          577 ------KKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT-----  642 (768)
Q Consensus       577 ------g~I~VWdl~t~~~~~tl~---~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~-----  642 (768)
                            +.|++||+.+++. ..+.   .|...|.+++|+|||++|++++. +.|++||+.+++. ......+...     
T Consensus        85 ~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g  161 (723)
T 1xfd_A           85 YQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNG  161 (723)
T ss_dssp             SSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEE
T ss_pred             eeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECc
Confidence                  7788999998876 3333   34445889999999999999886 7999999998765 4444433333     


Q ss_pred             -------------eEEEEEeCCCCeEEEEEeCC---------------------------------CcEEEEECCCCeeE
Q 004207          643 -------------VMSLDFHPSKEDLLCSCDNN---------------------------------SEIRYWSINNGSCA  676 (768)
Q Consensus       643 -------------V~slafsp~g~~lLaSgs~D---------------------------------g~I~iWDl~sg~~i  676 (768)
                                   +.+++|+|+|+.++++...+                                 ..|++||+.++++.
T Consensus       162 ~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~  241 (723)
T 1xfd_A          162 LSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD  241 (723)
T ss_dssp             ECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC
T ss_pred             ccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee
Confidence                         37899999998766554322                                 27999999988765


Q ss_pred             EEEec-------CCCeeEEEEecCCCEEEEEEcC----CeEEEEECCCceEeeec-------------c-----------
Q 004207          677 GVFKC-------QSGATQMRFQPRLGRILAAAIE----NYISILDVETQVCRLKL-------------Q-----------  721 (768)
Q Consensus       677 ~~~~~-------~~~i~sl~fsp~~~~llags~D----g~I~IwD~~t~~~~~~~-------------~-----------  721 (768)
                      ..+..       ...+..++|+|++.++++.+..    ..|++||+.++.+....             .           
T Consensus       242 ~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  321 (723)
T 1xfd_A          242 LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFF  321 (723)
T ss_dssp             EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEE
T ss_pred             EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEE
Confidence            55543       2457889999999877666543    57899998775432110             0           


Q ss_pred             --------------eeEEee-cCCCc---eEEeccCCCCeeE-EEEeCCCCEEEEEECC---CcEEEeC
Q 004207          722 --------------TLELWN-MTENK---TLTLSAHDKLVSS-LAASTVNGMVASASHD---KCVKIWK  768 (768)
Q Consensus       722 --------------~I~iwd-~~~~~---~~~l~~H~~~I~s-la~spdg~~LaSgs~D---G~V~IWD  768 (768)
                                    .|.+|| ...+.   ...+..+...+.. ++|+|++++|+..+.+   +.++||+
T Consensus       322 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  390 (723)
T 1xfd_A          322 FIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS  390 (723)
T ss_dssp             EEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred             EEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence                          133445 23333   3333333344544 6999999999877665   7888884

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.73  E-value=3.8e-15  Score=161.23  Aligned_cols=237  Identities=9%  Similarity=0.034  Sum_probs=162.0

Q ss_pred             CccccCCCCEEEeecCC----CcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 004207          499 PNQLTDMDRFVDDGSLD----DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG  574 (768)
Q Consensus       499 ~~~l~~~~~~latGS~D----~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs  574 (768)
                      ...+++.+++|++++.+    +.|.+|.....               ...+..+..+..+......+++  ++++|++++
T Consensus        54 ~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~---------------~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~  116 (361)
T 3scy_A           54 YLIPSADGKFVYSVNEFSKDQAAVSAFAFDKE---------------KGTLHLLNTQKTMGADPCYLTT--NGKNIVTAN  116 (361)
T ss_dssp             SEEECTTSSEEEEEECCSSTTCEEEEEEEETT---------------TTEEEEEEEEECSSSCEEEEEE--CSSEEEEEE
T ss_pred             eEEECCCCCEEEEEEccCCCCCcEEEEEEeCC---------------CCcEEEeeEeccCCCCcEEEEE--CCCEEEEEE
Confidence            34567778888888775    68888854321               1123444555556667788888  888777776


Q ss_pred             -CCCcEEEEECCCCeEEEE------ecc--------CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCe------e
Q 004207          575 -HDKKAVLWCTESFTVKST------LEE--------HTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDY------S  632 (768)
Q Consensus       575 -~Dg~I~VWdl~t~~~~~t------l~~--------h~~~V~sl~fspdg~~LaTgs-~DgtIrVWDl~t~~~------~  632 (768)
                       .++.|.+|++.....+..      ..+        +...+.+++|+|++++|++++ .++.|++|+++....      .
T Consensus       117 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l  196 (361)
T 3scy_A          117 YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKF  196 (361)
T ss_dssp             TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCC
T ss_pred             CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccce
Confidence             578999999875432211      111        123468899999999776665 478999999875432      1


Q ss_pred             ------EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE--EEec----CCCeeEEEEecCCCEEEEE
Q 004207          633 ------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKC----QSGATQMRFQPRLGRILAA  700 (768)
Q Consensus       633 ------~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~--~~~~----~~~i~sl~fsp~~~~llag  700 (768)
                            ......+...+.+++|+|+++.+++++..++.|.+||+.++....  .+..    ......++|+|++.+|+++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~  276 (361)
T 3scy_A          197 LTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYAS  276 (361)
T ss_dssp             EEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEE
T ss_pred             eecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEE
Confidence                  122233456688999999999787777679999999998776532  2322    2336799999999998877


Q ss_pred             EcC--CeEEEEECC--CceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEe
Q 004207          701 AIE--NYISILDVE--TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIW  767 (768)
Q Consensus       701 s~D--g~I~IwD~~--t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~IW  767 (768)
                      ..+  +.|.+|++.  ++....              ...+.. ...+.+++|+|++++|++++ .++.|.||
T Consensus       277 ~~~~~~~i~v~~~~~~~g~~~~--------------~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~  333 (361)
T 3scy_A          277 NRLKADGVAIFKVDETNGTLTK--------------VGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIF  333 (361)
T ss_dssp             ECSSSCEEEEEEECTTTCCEEE--------------EEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEE
T ss_pred             CCCCCCEEEEEEEcCCCCcEEE--------------eeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEE
Confidence            765  889999985  222110              001112 34678999999999998888 67899996

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.71  E-value=3e-16  Score=185.74  Aligned_cols=215  Identities=13%  Similarity=0.106  Sum_probs=150.4

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-----CeEEEEeccCCCC--------------EEEEEEcCCCCE
Q 004207          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQW--------------ITDVRFSPSLSR  611 (768)
Q Consensus       551 l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t-----~~~~~tl~~h~~~--------------V~sl~fspdg~~  611 (768)
                      +..+...+.+++|||||++|+++ .|+.|++||+.+     ++.......+...              +.+++|+|||++
T Consensus       116 l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~  194 (706)
T 2z3z_A          116 LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSC  194 (706)
T ss_dssp             EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSE
T ss_pred             ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCE
Confidence            34566778999999999999985 679999999998     7766544443332              489999999999


Q ss_pred             EEEEe---------------------------------CCCcEEEEECCCCCeeEEEe-ecCCCCeEEEEEeCCCCeEEE
Q 004207          612 LATSS---------------------------------ADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLC  657 (768)
Q Consensus       612 LaTgs---------------------------------~DgtIrVWDl~t~~~~~~~~-~~h~~~V~slafsp~g~~lLa  657 (768)
                      |++++                                 .+..|++||+.+++...... ..|...+.+++|+|+|+.+++
T Consensus       195 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  274 (706)
T 2z3z_A          195 LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYV  274 (706)
T ss_dssp             EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEE
T ss_pred             EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEE
Confidence            99998                                 44689999998866422111 246678999999999986665


Q ss_pred             EEeCCC-----cEEEEECCCC-eeEEEEec--CC---CeeEEEEec--CCCEEEEEEcCCeEEEEECC-CceEeeecc--
Q 004207          658 SCDNNS-----EIRYWSINNG-SCAGVFKC--QS---GATQMRFQP--RLGRILAAAIENYISILDVE-TQVCRLKLQ--  721 (768)
Q Consensus       658 Sgs~Dg-----~I~iWDl~sg-~~i~~~~~--~~---~i~sl~fsp--~~~~llags~Dg~I~IwD~~-t~~~~~~~~--  721 (768)
                      ++ .++     .|++||+.++ ........  ..   .+..++|+|  ++.+++++..|+.+.||++. ++.....+.  
T Consensus       275 ~~-~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~  353 (706)
T 2z3z_A          275 AE-VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG  353 (706)
T ss_dssp             EE-ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS
T ss_pred             EE-eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC
Confidence            44 344     8999999998 43333322  11   246789999  98888888788888888664 221111100  


Q ss_pred             -----------------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC----CcEEEeC
Q 004207          722 -----------------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD----KCVKIWK  768 (768)
Q Consensus       722 -----------------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D----G~V~IWD  768 (768)
                                                   .|..||..++....+ .|...+.+++|+|++++|+.++.+    +.|++||
T Consensus       354 ~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d  432 (706)
T 2z3z_A          354 EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN  432 (706)
T ss_dssp             SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred             CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence                                         233344444443333 366779999999999988876544    4588885

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.69  E-value=6.6e-15  Score=159.35  Aligned_cols=202  Identities=12%  Similarity=0.068  Sum_probs=143.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCC--CeE--EEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEE
Q 004207          554 STSKVESCHFSPDGKLLATGGHD----KKAVLWCTES--FTV--KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW  624 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~D----g~I~VWdl~t--~~~--~~tl~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVW  624 (768)
                      +...+..++|+|||++|++++.+    +.|.+|++..  ++.  +.....+...+..+++  ++++|++++ .+++|.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            66778889999999999999886    7999998765  443  3344445566788888  788777776 57899999


Q ss_pred             ECCCCCee--E-EE--eec--------CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe-------e-------EE
Q 004207          625 DTENPDYS--L-RT--FTG--------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-------C-------AG  677 (768)
Q Consensus       625 Dl~t~~~~--~-~~--~~~--------h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~-------~-------i~  677 (768)
                      ++......  + ..  ..+        +...+.+++|+|+++.+++++..++.|.+|++....       .       ..
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            99754321  1 11  111        123458899999999888888778999999987543       1       11


Q ss_pred             EEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEE
Q 004207          678 VFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA  756 (768)
Q Consensus       678 ~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~La  756 (768)
                      .+.....+..++|+|++.++++++ .++.|.+||+.++.....    ..       ......+...+.+++|+|++++|+
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~----~~-------~~~~~~~~~~~~~i~~spdg~~l~  274 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI----QT-------VAADTVNAQGSGDIHLSPDGKYLY  274 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE----EE-------EESCSSCCCCEEEEEECTTSSEEE
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe----EE-------EecCCCCCCCcccEEECCCCCEEE
Confidence            222355688999999999888887 589999999876543211    00       011223445678999999999987


Q ss_pred             EEECC--CcEEEeC
Q 004207          757 SASHD--KCVKIWK  768 (768)
Q Consensus       757 Sgs~D--G~V~IWD  768 (768)
                      +++.+  +.|.||+
T Consensus       275 v~~~~~~~~i~v~~  288 (361)
T 3scy_A          275 ASNRLKADGVAIFK  288 (361)
T ss_dssp             EEECSSSCEEEEEE
T ss_pred             EECCCCCCEEEEEE
Confidence            77654  8899985

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.69  E-value=2.9e-15  Score=158.56  Aligned_cols=196  Identities=11%  Similarity=0.081  Sum_probs=153.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCCC--CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCeeEEEee-cC----
Q 004207          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT-GH----  639 (768)
Q Consensus       568 ~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~--~V~sl~fspdg~~La-Tgs~DgtIrVWDl~t~~~~~~~~~-~h----  639 (768)
                      ++|++++.++.|.+||+.+++.+..+.....  .+.+++|+|++++++ +++.++.|++||+.+++. +..+. ++    
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~   80 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-EeeEEcCCcccc
Confidence            4789999999999999999998887763322  478999999997664 555678999999998775 33333 22    


Q ss_pred             CCCeEEEEEeCCCCeEEEEEe-----------CCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207          640 STTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI  708 (768)
Q Consensus       640 ~~~V~slafsp~g~~lLaSgs-----------~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~I  708 (768)
                      ...+.+++|+|+++.++++..           .++.|.+||+.+++.+..+.....+..++|+|++.+++++  ++.|.+
T Consensus        81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence            226788999999987665531           4799999999999988888877778899999999988887  688999


Q ss_pred             EECCCceEeeecc------------------------------------------------eeEEeecCCCceE--Eecc
Q 004207          709 LDVETQVCRLKLQ------------------------------------------------TLELWNMTENKTL--TLSA  738 (768)
Q Consensus       709 wD~~t~~~~~~~~------------------------------------------------~I~iwd~~~~~~~--~l~~  738 (768)
                      ||+.++.....+.                                                .+.+||..+++..  .+..
T Consensus       159 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  238 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             EECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCC
Confidence            9998876543211                                                2578888877654  3445


Q ss_pred             CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          739 HDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       739 H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +...+.+++|+|++++|+++  ++.|++||
T Consensus       239 ~~~~~~~~~~s~dg~~l~~~--~~~v~~~d  266 (337)
T 1pby_B          239 MDVFYFSTAVNPAKTRAFGA--YNVLESFD  266 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE--ESEEEEEE
T ss_pred             CCCceeeEEECCCCCEEEEe--CCeEEEEE
Confidence            66778899999999999988  78999996

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.69  E-value=6e-15  Score=158.58  Aligned_cols=206  Identities=12%  Similarity=0.117  Sum_probs=142.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCe--EEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 004207          553 ASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDT  626 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs~---Dg~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVWDl  626 (768)
                      .+...+..++|+|||+ |++++.   ++.|.+|++.+++  .+..+..+...+..++|+|++++|++++ .+++|++||+
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            3446678899999999 555443   6899999998766  3444455677889999999999998888 6789999999


Q ss_pred             CC-CCee-EEEeec---------CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC-CCeeEEE--Eec--CCCeeEEEE
Q 004207          627 EN-PDYS-LRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FKC--QSGATQMRF  690 (768)
Q Consensus       627 ~t-~~~~-~~~~~~---------h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~-sg~~i~~--~~~--~~~i~sl~f  690 (768)
                      .. +... +..+..         +...+.+++|+|+++ +++++..++.|++||+. +++....  +..  ...+..++|
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~  194 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF  194 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence            63 2221 222221         123488999999998 88788888999999998 5554322  222  346788999


Q ss_pred             ecCCCEEEEEE-cCCeEEEEECCC--ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEE-EEEECCCcEEE
Q 004207          691 QPRLGRILAAA-IENYISILDVET--QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV-ASASHDKCVKI  766 (768)
Q Consensus       691 sp~~~~llags-~Dg~I~IwD~~t--~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~L-aSgs~DG~V~I  766 (768)
                      +|++.++++++ .++.|.+|++..  +....    +.........    ......+..++|+|+|++| ++...++.|.+
T Consensus       195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~----~~~~~~~~~~----~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v  266 (347)
T 3hfq_A          195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQ----LGIVKTIPAD----YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAV  266 (347)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTTTEEEE----EEEEESSCTT----CCSCCEEEEEEECTTSCEEEEEEETTTEEEE
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCceEE----eeeeeecCCC----CCCCCcceeEEECCCCCEEEEEeCCCCEEEE
Confidence            99999777755 578899998864  32211    0000000000    0112458899999999977 45566899999


Q ss_pred             eC
Q 004207          767 WK  768 (768)
Q Consensus       767 WD  768 (768)
                      ||
T Consensus       267 ~~  268 (347)
T 3hfq_A          267 FA  268 (347)
T ss_dssp             EE
T ss_pred             EE
Confidence            96

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.68  E-value=5.7e-16  Score=179.48  Aligned_cols=209  Identities=10%  Similarity=0.036  Sum_probs=156.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCC--
Q 004207          555 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTEN--  628 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~-Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~---DgtIrVWDl~t--  628 (768)
                      ..+|++++|+|||++||+++. ||++.||++++++.......+...|.+++|+|| +++++++.   +...+||.++.  
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~   99 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR   99 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence            457999999999999998887 999999999777665444333368999999999 78888775   45556665543  


Q ss_pred             CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcC----C
Q 004207          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE----N  704 (768)
Q Consensus       629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~D----g  704 (768)
                      ..... .+..+ ..+...+|+|+++.++++.+.++.+.+||+.++++........  .+++|+|+|.+|++++.+    .
T Consensus       100 ~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~  175 (582)
T 3o4h_A          100 PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRV  175 (582)
T ss_dssp             TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEE
T ss_pred             CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCe
Confidence            22212 33322 2355778999987766555555666699999988776665444  889999999999988877    7


Q ss_pred             eEEEEECCCceEeeecc--------------------------eeEEeecCCCceEEeccCCCCeeEEE--------EeC
Q 004207          705 YISILDVETQVCRLKLQ--------------------------TLELWNMTENKTLTLSAHDKLVSSLA--------AST  750 (768)
Q Consensus       705 ~I~IwD~~t~~~~~~~~--------------------------~I~iwd~~~~~~~~l~~H~~~I~sla--------~sp  750 (768)
                      .|++||+.++.......                          .|.+||+.+++...+..|...|..++        |+|
T Consensus       176 ~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  255 (582)
T 3o4h_A          176 SLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLP  255 (582)
T ss_dssp             EEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECT
T ss_pred             EEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcC
Confidence            79999987654321110                          68889998887776667777777777        999


Q ss_pred             CCCEEEEEECCCcEEEeC
Q 004207          751 VNGMVASASHDKCVKIWK  768 (768)
Q Consensus       751 dg~~LaSgs~DG~V~IWD  768 (768)
                      ||.++++++.||.++||+
T Consensus       256 dg~~~~~~~~~g~~~l~~  273 (582)
T 3o4h_A          256 DGRLAVVARREGRSAVFI  273 (582)
T ss_dssp             TSCEEEEEEETTEEEEEE
T ss_pred             CCcEEEEEEcCCcEEEEE
Confidence            999999999999999995

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.67  E-value=2.9e-15  Score=186.02  Aligned_cols=188  Identities=6%  Similarity=-0.036  Sum_probs=144.0

Q ss_pred             Ccccc-CCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCC-CeEEEEEcCCCCEEEEEeCC
Q 004207          499 PNQLT-DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS-KVESCHFSPDGKLLATGGHD  576 (768)
Q Consensus       499 ~~~l~-~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~-~I~sl~fSpdg~~LaSgs~D  576 (768)
                      ...++ +.+..++.++ ++.+.+|.....                    ....+..|.. .+.+++|+ ||+.|++++.+
T Consensus       300 ~~~~S~pdG~~la~~~-~~~i~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~  357 (1045)
T 1k32_A          300 AEDFSPLDGDLIAFVS-RGQAFIQDVSGT--------------------YVLKVPEPLRIRYVRRGGD-TKVAFIHGTRE  357 (1045)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSS--------------------BEEECSCCSCEEEEEECSS-SEEEEEEEETT
T ss_pred             eeeecCCCCCEEEEEE-cCEEEEEcCCCC--------------------ceEEccCCCcceEEeeeEc-CCCeEEEEECC
Confidence            34445 5666677666 677777743211                    1223456777 89999999 99999999988


Q ss_pred             CcEE-EEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeE
Q 004207          577 KKAV-LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL  655 (768)
Q Consensus       577 g~I~-VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~l  655 (768)
                      ..|. +||+.+++... +..|...+.+++|+||+++|++++.++.|++||+.+++. .....+|...|.+++|+|+|+.+
T Consensus       358 ~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~-~~~~~~~~~~v~~~~~SpDG~~l  435 (1045)
T 1k32_A          358 GDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNSRFI  435 (1045)
T ss_dssp             EEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTSCEE
T ss_pred             CceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce-EEeccCCCCCccceEECCCCCeE
Confidence            8898 99998876554 447888999999999999999999999999999998774 55566788999999999999877


Q ss_pred             EEEEeCC---------CcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 004207          656 LCSCDNN---------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD  710 (768)
Q Consensus       656 LaSgs~D---------g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD  710 (768)
                      ++++..+         +.|++||+.+++......+...+..++|+|++.+|++++.++...+|+
T Consensus       436 a~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          436 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             EEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             EEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence            6555432         489999999887433333455678899999999999988766554444

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.67  E-value=7.5e-15  Score=160.15  Aligned_cols=239  Identities=10%  Similarity=0.082  Sum_probs=159.5

Q ss_pred             CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCE--EEEEe--
Q 004207          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL--LATGG--  574 (768)
Q Consensus       499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~--LaSgs--  574 (768)
                      ...+++.+++|++++.+ .|.+|.....               +. +..+.....+ +.+.+++|+|||++  +++++  
T Consensus        44 ~~a~spdg~~l~~~~~~-~v~~~~~~~~---------------g~-~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~  105 (365)
T 1jof_A           44 WMTFDHERKNIYGAAMK-KWSSFAVKSP---------------TE-IVHEASHPIG-GHPRANDADTNTRAIFLLAAKQP  105 (365)
T ss_dssp             EEEECTTSSEEEEEEBT-EEEEEEEEET---------------TE-EEEEEEEECC-SSGGGGCTTSCCEEEEEEECSST
T ss_pred             EEEECCCCCEEEEEccc-eEEEEEECCC---------------CC-EEEeeEeecC-CCCccEEECCCCCEEEEEEecCC
Confidence            34456677788888877 8888854211               10 1111111111 23566899999994  45553  


Q ss_pred             -----------CCCcEEEEECC-CCeEEEEec----cCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECC-CCCee-EEE
Q 004207          575 -----------HDKKAVLWCTE-SFTVKSTLE----EHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTE-NPDYS-LRT  635 (768)
Q Consensus       575 -----------~Dg~I~VWdl~-t~~~~~tl~----~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~-t~~~~-~~~  635 (768)
                                 .++.+.+|++. +++....+.    .+...+.+++|+|+|++|++++. ++.|++||++ +++.. +..
T Consensus       106 ~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~  185 (365)
T 1jof_A          106 PYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS  185 (365)
T ss_dssp             TCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE
T ss_pred             cceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeee
Confidence                       68999999997 466554443    24567999999999998887764 6799999998 66542 223


Q ss_pred             ee--cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC--CCeeEE---EEec---C----C-------CeeEEE-EecC
Q 004207          636 FT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NGSCAG---VFKC---Q----S-------GATQMR-FQPR  693 (768)
Q Consensus       636 ~~--~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~--sg~~i~---~~~~---~----~-------~i~sl~-fsp~  693 (768)
                      +.  .|...+..++|+|+|+.+++++..++.|.+|++.  +++...   .+..   .    .       .+..++ |+|+
T Consensus       186 ~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spd  265 (365)
T 1jof_A          186 VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFS  265 (365)
T ss_dssp             EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT
T ss_pred             EecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCC
Confidence            33  2456799999999998777666668899999865  565432   2221   1    1       377899 9999


Q ss_pred             CCEEEEEEcC-C-----eEEEEECC-CceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeC---CCCEEEEEECC-C
Q 004207          694 LGRILAAAIE-N-----YISILDVE-TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAST---VNGMVASASHD-K  762 (768)
Q Consensus       694 ~~~llags~D-g-----~I~IwD~~-t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~sp---dg~~LaSgs~D-G  762 (768)
                      +++|+++..+ +     .|.+|++. ++......             .....+...+..++|+|   ++++|++++.+ +
T Consensus       266 G~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~-------------~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~  332 (365)
T 1jof_A          266 GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL-------------FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEG  332 (365)
T ss_dssp             SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE-------------EEEECSSCCTTCCCEEECTTCTTEEEEECSSSC
T ss_pred             CCEEEEECCCCCCCCCCeEEEEEECCCCCEEEee-------------eeeecCCCCcccceecCCCcCCCEEEEEEcCCC
Confidence            9988877643 3     79999885 33221000             01122444567889999   89999999874 8


Q ss_pred             cEEEeC
Q 004207          763 CVKIWK  768 (768)
Q Consensus       763 ~V~IWD  768 (768)
                      .|.||+
T Consensus       333 ~v~v~~  338 (365)
T 1jof_A          333 WLEIYR  338 (365)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            999995

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.66  E-value=3.9e-16  Score=184.87  Aligned_cols=209  Identities=13%  Similarity=0.121  Sum_probs=154.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC---CEEEEEEcCCCCEEEEEeCC---------CcEEEE
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSAD---------RTVRVW  624 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~---~V~sl~fspdg~~LaTgs~D---------gtIrVW  624 (768)
                      .+.+++|+|||+++++ +.||+|++||+.+++....+..|..   .|.+++|+|||++|++++.+         +.|++|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4678999999997776 7899999999999988888877765   49999999999999999875         778899


Q ss_pred             ECCCCCee-EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCe-----------------
Q 004207          625 DTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGA-----------------  685 (768)
Q Consensus       625 Dl~t~~~~-~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i-----------------  685 (768)
                      |+.+++.. +....+|...+.+++|+|+|+.++++.  ++.|++||+.+++....... ...+                 
T Consensus        97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~  174 (723)
T 1xfd_A           97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (723)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             ECCCCceEeccCCccccccccccEECCCCCEEEEEE--CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence            99987641 122223445589999999998666444  37999999998887766553 2223                 


Q ss_pred             -eEEEEecCCCEEEEEEcCC----------------------------------eEEEEECCCceEeee-----------
Q 004207          686 -TQMRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCRLK-----------  719 (768)
Q Consensus       686 -~sl~fsp~~~~llags~Dg----------------------------------~I~IwD~~t~~~~~~-----------  719 (768)
                       .+++|+|++.+|++++.++                                  .|++||+.++.+...           
T Consensus       175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~  254 (723)
T 1xfd_A          175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE  254 (723)
T ss_dssp             SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred             cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence             7899999999999887653                                  799999877642100           


Q ss_pred             -----c-------------------ceeEEeecCCCceEEec--cCCCCee----EEEEeCCCCEEEE--EECCC-----
Q 004207          720 -----L-------------------QTLELWNMTENKTLTLS--AHDKLVS----SLAASTVNGMVAS--ASHDK-----  762 (768)
Q Consensus       720 -----~-------------------~~I~iwd~~~~~~~~l~--~H~~~I~----sla~spdg~~LaS--gs~DG-----  762 (768)
                           .                   ..|.+||+.++++..+.  .|...+.    +++|+|||+.|+.  +..|+     
T Consensus       255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  334 (723)
T 1xfd_A          255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF  334 (723)
T ss_dssp             EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCE
T ss_pred             ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcce
Confidence                 0                   15778888887765432  3344443    7899999986664  45677     


Q ss_pred             -cEEEeC
Q 004207          763 -CVKIWK  768 (768)
Q Consensus       763 -~V~IWD  768 (768)
                       .|.+||
T Consensus       335 ~~l~~~d  341 (723)
T 1xfd_A          335 YHITVSS  341 (723)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEEe
Confidence             465664

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.66  E-value=4e-15  Score=184.86  Aligned_cols=193  Identities=12%  Similarity=0.039  Sum_probs=157.5

Q ss_pred             CCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC-CEEEEEEcCCCCEEEEEeCCCcEE-EEECCCC
Q 004207          553 ASTSKVESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADRTVR-VWDTENP  629 (768)
Q Consensus       553 ~H~~~I~sl~fS-pdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~-~V~sl~fspdg~~LaTgs~DgtIr-VWDl~t~  629 (768)
                      .|...|.+++|+ |||++|++++ ++.|++|++.+++.. .+..|.. .+.+++|+ +++.|++++.+..|. +||+.++
T Consensus       293 ~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~  369 (1045)
T 1k32_A          293 ISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG  369 (1045)
T ss_dssp             EECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC
T ss_pred             ccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC
Confidence            356679999999 9999999887 789999999887755 4666777 89999999 999999999988898 9999876


Q ss_pred             CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcCC----
Q 004207          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIEN----  704 (768)
Q Consensus       630 ~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg----  704 (768)
                      ..  ..+.+|...+.+++|+|+|+.+ ++++.++.|++||+.+++....+. +...+..++|+|++.+|++++.++    
T Consensus       370 ~~--~~l~~~~~~~~~~~~SpDG~~l-a~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~  446 (1045)
T 1k32_A          370 KA--EKFEENLGNVFAMGVDRNGKFA-VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGET  446 (1045)
T ss_dssp             CE--EECCCCCCSEEEEEECTTSSEE-EEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred             Cc--eEecCCccceeeeEECCCCCEE-EEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccc
Confidence            53  3444788899999999998854 477789999999999998887774 456678999999999998887654    


Q ss_pred             ------eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          705 ------YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       705 ------~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                            .|++||+.++                 +...+..|...+.+++|+|+|++|++++.++...+|+
T Consensus       447 ~~~~~~~i~l~d~~~g-----------------~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          447 DGYVMQAIHVYDMEGR-----------------KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             CSCCEEEEEEEETTTT-----------------EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             cCCCCCeEEEEECCCC-----------------cEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence                  5666666553                 3334557778889999999999999999988777774

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.65  E-value=2.5e-14  Score=155.53  Aligned_cols=249  Identities=11%  Similarity=0.080  Sum_probs=172.5

Q ss_pred             ccccCCCCEEEeecC-CCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207          500 NQLTDMDRFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK  578 (768)
Q Consensus       500 ~~l~~~~~~latGS~-D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~  578 (768)
                      ..+.+.++.|+..+. ++...+|.....              .+   .......+|...+.++.|+|||++|+.++.++.
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~--------------~g---~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~  103 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLN--------------TQ---VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRN  103 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETT--------------TC---EEEECCCSSCBCSSSCEECTTSSEEEEEETTTE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCC--------------CC---ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCe
Confidence            345666777777766 676555532111              11   122333455555667889999999999999999


Q ss_pred             EEEEECCCCeEEEEeccCCCCEEEEEE--cCCCCEEEEEe----------------------CCCcEEEEECCCCCeeEE
Q 004207          579 AVLWCTESFTVKSTLEEHTQWITDVRF--SPSLSRLATSS----------------------ADRTVRVWDTENPDYSLR  634 (768)
Q Consensus       579 I~VWdl~t~~~~~tl~~h~~~V~sl~f--spdg~~LaTgs----------------------~DgtIrVWDl~t~~~~~~  634 (768)
                      |++||+.+++....+..+...+....|  ++++++++...                      .+..|++||+.+++  ..
T Consensus       104 l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~  181 (388)
T 3pe7_A          104 LMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--ST  181 (388)
T ss_dssp             EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--EE
T ss_pred             EEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc--eE
Confidence            999999999887777666665654444  89999887532                      34689999999876  34


Q ss_pred             EeecCCCCeEEEEEeC-CCCeEEEEEeC-----CCcEEEEECCCCeeEEEEecC--CCeeEEEEecCCCEEEEEEc-CC-
Q 004207          635 TFTGHSTTVMSLDFHP-SKEDLLCSCDN-----NSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAI-EN-  704 (768)
Q Consensus       635 ~~~~h~~~V~slafsp-~g~~lLaSgs~-----Dg~I~iWDl~sg~~i~~~~~~--~~i~sl~fsp~~~~llags~-Dg-  704 (768)
                      .+..+...+..++|+| +++.++++...     ...|.++|+..+.........  ..+..++|+|++..|+..+. ++ 
T Consensus       182 ~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  261 (388)
T 3pe7_A          182 VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGS  261 (388)
T ss_dssp             EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTC
T ss_pred             EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCC
Confidence            4445667899999999 88766655542     347888888765543333332  23677899999998766553 22 


Q ss_pred             ---eEEEEECCCceEee--e-------------------------------------cceeEEeecCCCceEEeccCCC-
Q 004207          705 ---YISILDVETQVCRL--K-------------------------------------LQTLELWNMTENKTLTLSAHDK-  741 (768)
Q Consensus       705 ---~I~IwD~~t~~~~~--~-------------------------------------~~~I~iwd~~~~~~~~l~~H~~-  741 (768)
                         .|++||+.+++...  .                                     ...|.+||+.++....+..|.. 
T Consensus       262 ~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~  341 (388)
T 3pe7_A          262 PDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTS  341 (388)
T ss_dssp             CCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCC
T ss_pred             CcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCc
Confidence               39999998764211  0                                     0157788888888777777766 


Q ss_pred             ----------CeeEEEEeCCCCEEEEEE-CCCcEEEe
Q 004207          742 ----------LVSSLAASTVNGMVASAS-HDKCVKIW  767 (768)
Q Consensus       742 ----------~I~sla~spdg~~LaSgs-~DG~V~IW  767 (768)
                                .+.+++|+|||++|+.++ .+|...||
T Consensus       342 ~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~  378 (388)
T 3pe7_A          342 WKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY  378 (388)
T ss_dssp             CCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred             ccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence                      588899999999887666 47777776

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.64  E-value=7.8e-14  Score=150.06  Aligned_cols=213  Identities=14%  Similarity=0.129  Sum_probs=163.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCeEEEEec-cCCCCEEEEEEcCCC
Q 004207          555 TSKVESCHFSPDGKLLATGGHD------------------------KKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSL  609 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~D------------------------g~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg  609 (768)
                      -+.|.+|+++++|+++++...+                        ++|.+||..+++.+..+. .+-..+..|++++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3569999999999999888777                        479999999888877664 344578999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCCeeEEEe---------ecCCCCeEEEEEeCCCCeEEEEEe-CCCcEEEEECCCCeeEEEE
Q 004207          610 SRLATSSADRTVRVWDTENPDYSLRTF---------TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVF  679 (768)
Q Consensus       610 ~~LaTgs~DgtIrVWDl~t~~~~~~~~---------~~h~~~V~slafsp~g~~lLaSgs-~Dg~I~iWDl~sg~~i~~~  679 (768)
                      +++++...++.|++||.+.....+..+         .++...+.+|+|+|++..++++.+ .++.|++|| .++..+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence            988888889999999987543234444         234457899999994445776775 689999999 567777766


Q ss_pred             ecC-----------CCeeEEEEecCCCEEEEE-EcCCeEEEEECCCceEeeec---------------------------
Q 004207          680 KCQ-----------SGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKL---------------------------  720 (768)
Q Consensus       680 ~~~-----------~~i~sl~fsp~~~~llag-s~Dg~I~IwD~~t~~~~~~~---------------------------  720 (768)
                      ...           .....++++|+++.++++ ..++.|.+||..+++....+                           
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~  261 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPY  261 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEE
Confidence            431           227889999985555554 46789999999855443322                           


Q ss_pred             ------ceeEEeecCCCceEEe----ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          721 ------QTLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       721 ------~~I~iwd~~~~~~~~l----~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                            ..+.+|+..+++.+..    .++...+..|+++|+|.++++...++.|++|+
T Consensus       262 v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~  319 (329)
T 3fvz_A          262 FGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT  319 (329)
T ss_dssp             TTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred             eccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence                  0577888888877755    35677899999999998888888899999985

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.64  E-value=4.7e-15  Score=175.39  Aligned_cols=198  Identities=12%  Similarity=0.036  Sum_probs=143.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----C
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-----P  629 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t-----~  629 (768)
                      ...|.+++|+|| +.++.+. |+.|++||+.+++.... ..+...+.+++|+|||++|+++ .|+.|++||+.+     +
T Consensus        81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g  156 (706)
T 2z3z_A           81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS  156 (706)
T ss_dssp             -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred             ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence            367999999999 6666553 59999999998876544 4466778999999999999985 689999999987     6


Q ss_pred             CeeEEEeecCCCC--------------eEEEEEeCCCCeEEEEEe--------------------------------CCC
Q 004207          630 DYSLRTFTGHSTT--------------VMSLDFHPSKEDLLCSCD--------------------------------NNS  663 (768)
Q Consensus       630 ~~~~~~~~~h~~~--------------V~slafsp~g~~lLaSgs--------------------------------~Dg  663 (768)
                      +. ......+...              +.+++|+|+|+.+++++.                                .+.
T Consensus       157 ~~-~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~  235 (706)
T 2z3z_A          157 RA-IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV  235 (706)
T ss_dssp             CC-EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred             Cc-EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence            54 3323323332              489999999987665541                                346


Q ss_pred             cEEEEECCCCeeEEEEe---cCCCeeEEEEecCCCEEEEEEcCC-----eEEEEECCCceEeeecceeEEeecCCCceEE
Q 004207          664 EIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIEN-----YISILDVETQVCRLKLQTLELWNMTENKTLT  735 (768)
Q Consensus       664 ~I~iWDl~sg~~i~~~~---~~~~i~sl~fsp~~~~llags~Dg-----~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~  735 (768)
                      .|++||+.+++......   ....+..++|+|++.+|++++.++     .|.+||+.++.....+     ...      .
T Consensus       236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~-----~~~------~  304 (706)
T 2z3z_A          236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTL-----FVE------T  304 (706)
T ss_dssp             EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEE-----EEE------E
T ss_pred             EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEE-----EEc------c
Confidence            79999999888655442   234588999999999999888775     7888888776221110     000      0


Q ss_pred             eccCCCCeeEEEEeC--CCCEEEEEECCCcEEEeC
Q 004207          736 LSAHDKLVSSLAAST--VNGMVASASHDKCVKIWK  768 (768)
Q Consensus       736 l~~H~~~I~sla~sp--dg~~LaSgs~DG~V~IWD  768 (768)
                      .......+.+++|+|  ++++|++++.||.++||+
T Consensus       305 ~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~  339 (706)
T 2z3z_A          305 DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL  339 (706)
T ss_dssp             CSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred             CCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence            001112356789999  999999999999999984

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.63  E-value=3.6e-14  Score=154.76  Aligned_cols=207  Identities=9%  Similarity=0.081  Sum_probs=142.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEeccC-CCCEEEEEEcCCCCE--EEEEe-------------
Q 004207          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEH-TQWITDVRFSPSLSR--LATSS-------------  616 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~-t~~~~~tl~~h-~~~V~sl~fspdg~~--LaTgs-------------  616 (768)
                      +...+..++|+|||++|++++.+ .|.+|++. +++........ .+.+.+++|+|++++  +++++             
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            44568899999999999999888 99999997 77765433211 123567899999994  45553             


Q ss_pred             CCCcEEEEECCC-CCeeEEEee----cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC-CCeeE--EEEec---CCCe
Q 004207          617 ADRTVRVWDTEN-PDYSLRTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCA--GVFKC---QSGA  685 (768)
Q Consensus       617 ~DgtIrVWDl~t-~~~~~~~~~----~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~-sg~~i--~~~~~---~~~i  685 (768)
                      .++++.+|+++. ++. ...+.    .+...+.+++|+|+|+.++++...++.|++||+. +++..  ..+..   ...+
T Consensus       117 ~~g~v~v~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p  195 (365)
T 1jof_A          117 FAGYGNVFSVSETGKL-EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SCCEEEEEEECTTCCE-EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             CCceEEEEccCCCCcC-cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence            689999999974 443 22222    2456799999999998776555557899999998 67653  33331   4568


Q ss_pred             eEEEEecCCCEEEEEEc-CCeEEEEECC--CceEeeecceeEEeecCCCceEEeccCCC------CeeEEE-EeCCCCEE
Q 004207          686 TQMRFQPRLGRILAAAI-ENYISILDVE--TQVCRLKLQTLELWNMTENKTLTLSAHDK------LVSSLA-ASTVNGMV  755 (768)
Q Consensus       686 ~sl~fsp~~~~llags~-Dg~I~IwD~~--t~~~~~~~~~I~iwd~~~~~~~~l~~H~~------~I~sla-~spdg~~L  755 (768)
                      ..++|+|++.++++++. ++.|.+|++.  ++........+.  .+..+    +.+|..      .+..++ |+|+|++|
T Consensus       196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~--~~~~~----~~g~~~~~~~~~~~~~i~~~spdG~~l  269 (365)
T 1jof_A          196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP--LIPPG----IPDRDPETGKGLYRADVCALTFSGKYM  269 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE--SSCTT----CCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred             CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE--cCCCC----cCCcccccccccccccEEEECCCCCEE
Confidence            89999999999888775 6889998765  333211000010  00000    112332      588999 99999988


Q ss_pred             EEEECCC------cEEEeC
Q 004207          756 ASASHDK------CVKIWK  768 (768)
Q Consensus       756 aSgs~DG------~V~IWD  768 (768)
                      ++++.+.      .|.+|+
T Consensus       270 ~v~~~~~~~~~~~~i~v~~  288 (365)
T 1jof_A          270 FASSRANKFELQGYIAGFK  288 (365)
T ss_dssp             EEEEEESSTTSCCEEEEEE
T ss_pred             EEECCCCCCCCCCeEEEEE
Confidence            8776432      799985

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.63  E-value=8.9e-15  Score=155.85  Aligned_cols=203  Identities=11%  Similarity=0.030  Sum_probs=146.9

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCC-CCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCeeEEEee
Q 004207          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT  637 (768)
Q Consensus       560 sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~-~~V~sl~fspdg~~La-Tgs~DgtIrVWDl~t~~~~~~~~~  637 (768)
                      ++++++++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|++||+.+++. +..+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~~   82 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHAN   82 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-EEEEE
Confidence            45678888899999999999999999999888876543 2578999999998665 455689999999998765 43343


Q ss_pred             -cC-----CCCeEEEEEeCCCCeEEEEEeC-----------CCcEEEEECCCCe---eEEEEecCCCeeEEEEecCCCEE
Q 004207          638 -GH-----STTVMSLDFHPSKEDLLCSCDN-----------NSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRI  697 (768)
Q Consensus       638 -~h-----~~~V~slafsp~g~~lLaSgs~-----------Dg~I~iWDl~sg~---~i~~~~~~~~i~sl~fsp~~~~l  697 (768)
                       .+     ...+.+++|+|+++.+++++..           ++.|.+||+.+++   .+..+.....+.+++|+|++. +
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L  161 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence             22     2337889999999877755533           4899999998843   445555666788999999998 6


Q ss_pred             EEEEcCCeEEEEECCCceEeeecce--------------------------------------------------eEEee
Q 004207          698 LAAAIENYISILDVETQVCRLKLQT--------------------------------------------------LELWN  727 (768)
Q Consensus       698 lags~Dg~I~IwD~~t~~~~~~~~~--------------------------------------------------I~iwd  727 (768)
                      +++  ++.|.+||+.+++....+..                                                  +..++
T Consensus       162 ~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  239 (349)
T 1jmx_B          162 YVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  239 (349)
T ss_dssp             EEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             EEc--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence            664  34499999988765433210                                                  00123


Q ss_pred             cCCCceE--EeccCCCCeeEEEEeC-CCCEEEEEECCCcEEEeC
Q 004207          728 MTENKTL--TLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK  768 (768)
Q Consensus       728 ~~~~~~~--~l~~H~~~I~sla~sp-dg~~LaSgs~DG~V~IWD  768 (768)
                      ..++++.  .+..+...+.+++|+| ++++|+++  ++.|.+||
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d  281 (349)
T 1jmx_B          240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYD  281 (349)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEE
T ss_pred             ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEE
Confidence            3333322  2223445688999999 99999888  88999996

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.61  E-value=1.3e-14  Score=172.27  Aligned_cols=241  Identities=12%  Similarity=0.106  Sum_probs=157.3

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCC---CeEEEEEcCCCCEEEEEeC------
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGH------  575 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~---~I~sl~fSpdg~~LaSgs~------  575 (768)
                      .+.+++++ .|++|++|....+.                   ....+..|..   .|.+++|||||++|++++.      
T Consensus        26 dg~~~~~~-~d~~i~~~~~~~g~-------------------~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~   85 (719)
T 1z68_A           26 GQEYLHQS-ADNNIVLYNIETGQ-------------------SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWR   85 (719)
T ss_dssp             SSEEEEEC-TTSCEEEEESSSCC-------------------EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSS
T ss_pred             CCeEEEEc-CCCCEEEEEcCCCc-------------------EEEEEccccccccceeeEEECCCCCeEEEEecCceeEE
Confidence            33555555 58999999654331                   1222223322   4899999999999998876      


Q ss_pred             ---CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCe---------
Q 004207          576 ---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV---------  643 (768)
Q Consensus       576 ---Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V---------  643 (768)
                         |+.|++||+.+++.+.... ....+.+++|+|||+.|+++. |+.|++||+.+++....+..++...|         
T Consensus        86 ~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~  163 (719)
T 1z68_A           86 YSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY  163 (719)
T ss_dssp             SCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred             eecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccccee
Confidence               7899999999987731111 125688999999999999985 78999999988765222223333222         


Q ss_pred             --------EEEEEeCCCCeEEEEEeCCC---------------------------------cEEEEECCCCeeE--EEEe
Q 004207          644 --------MSLDFHPSKEDLLCSCDNNS---------------------------------EIRYWSINNGSCA--GVFK  680 (768)
Q Consensus       644 --------~slafsp~g~~lLaSgs~Dg---------------------------------~I~iWDl~sg~~i--~~~~  680 (768)
                              .+++|+|||+.++++...++                                 .|++||+.+++++  ..+.
T Consensus       164 ~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~  243 (719)
T 1z68_A          164 EEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP  243 (719)
T ss_dssp             HHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC
T ss_pred             eeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc
Confidence                    48999999987665443322                                 7889999987653  1111


Q ss_pred             -------cCCCeeEEEEecCCCEEEEEEcC----CeEEEEE----CCCceEeeec-----------------c-------
Q 004207          681 -------CQSGATQMRFQPRLGRILAAAIE----NYISILD----VETQVCRLKL-----------------Q-------  721 (768)
Q Consensus       681 -------~~~~i~sl~fsp~~~~llags~D----g~I~IwD----~~t~~~~~~~-----------------~-------  721 (768)
                             +...+..++|+|++..+++....    ..|.+||    +.++.+....                 .       
T Consensus       244 ~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  323 (719)
T 1z68_A          244 VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA  323 (719)
T ss_dssp             CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence                   23357899999996555443332    2488899    6554321111                 0       


Q ss_pred             --------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC-----CcEEEeC
Q 004207          722 --------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-----KCVKIWK  768 (768)
Q Consensus       722 --------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D-----G~V~IWD  768 (768)
                                    .|.+||+..+....+..+...|..+.++ +++.|+..+.+     +.++||+
T Consensus       324 ~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~  388 (719)
T 1z68_A          324 ISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR  388 (719)
T ss_dssp             SCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred             CeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence                          3445565555555555566667888777 78777766655     7788873

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.61  E-value=7.5e-13  Score=138.25  Aligned_cols=234  Identities=9%  Similarity=0.065  Sum_probs=160.3

Q ss_pred             ccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEE-cCCCCEEEEEeC-CC
Q 004207          500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF-SPDGKLLATGGH-DK  577 (768)
Q Consensus       500 ~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~f-Spdg~~LaSgs~-Dg  577 (768)
                      ..+++.+.++++...++.|.+|... ..     ....+...        ....+|...+.++++ .+++.++++... ++
T Consensus        35 v~~~~~g~l~v~~~~~~~i~~~d~~-g~-----~~~~~~~~--------~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~  100 (286)
T 1q7f_A           35 VAVNAQNDIIVADTNNHRIQIFDKE-GR-----FKFQFGEC--------GKRDSQLLYPNRVAVVRNSGDIIVTERSPTH  100 (286)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTT-SC-----EEEEECCB--------SSSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred             EEECCCCCEEEEECCCCEEEEECCC-Cc-----EEEEeccc--------CCCcccccCceEEEEEcCCCeEEEEcCCCCC
Confidence            3445566788887888899999532 10     00000000        001234567899999 467776666643 88


Q ss_pred             cEEEEECCCCeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee--cCCCCeEEEEEeCCCCe
Q 004207          578 KAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT--GHSTTVMSLDFHPSKED  654 (768)
Q Consensus       578 ~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~--~h~~~V~slafsp~g~~  654 (768)
                      .|++|| .+++.+..+. .+...+.+|+++++++++++...++.|++||.+. +. +..+.  .+...+.+|++++++. 
T Consensus       101 ~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~-~~~~~~~~~~~~p~~i~~~~~g~-  176 (286)
T 1q7f_A          101 QIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NV-LHKFGCSKHLEFPNGVVVNDKQE-  176 (286)
T ss_dssp             EEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE-EEEEECTTTCSSEEEEEECSSSE-
T ss_pred             EEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CE-EEEeCCCCccCCcEEEEECCCCC-
Confidence            999999 5667776664 3445789999999999888887889999999753 32 34443  3456789999999976 


Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEecC---CCeeEEEEecCCCEEEEEEcCC-eEEEEECCCceEeeecceeEEeecCC
Q 004207          655 LLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQTLELWNMTE  730 (768)
Q Consensus       655 lLaSgs~Dg~I~iWDl~sg~~i~~~~~~---~~i~sl~fsp~~~~llags~Dg-~I~IwD~~t~~~~~~~~~I~iwd~~~  730 (768)
                      ++++...++.|++||.. +..+..+...   ..+..+++++++..+++...++ .|.+||.... ...      .+    
T Consensus       177 l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-~~~------~~----  244 (286)
T 1q7f_A          177 IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-LIS------AL----  244 (286)
T ss_dssp             EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-EEE------EE----
T ss_pred             EEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-EEE------EE----
Confidence            77677778999999974 5666666543   4678999999987666666665 8999986542 211      11    


Q ss_pred             CceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          731 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       731 ~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                          ........+.+++++|++.++++ +.|+.|+||+
T Consensus       245 ----~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~  277 (286)
T 1q7f_A          245 ----ESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYR  277 (286)
T ss_dssp             ----EESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred             ----cccCCCCcceeEEECCCCcEEEE-CCCCeEEEEE
Confidence                11122234789999999987666 6799999995

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.58  E-value=7.6e-14  Score=166.94  Aligned_cols=228  Identities=13%  Similarity=0.076  Sum_probs=150.8

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCC-----CeEEEEEcCCCCEEEEEeCC---
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS-----KVESCHFSPDGKLLATGGHD---  576 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~-----~I~sl~fSpdg~~LaSgs~D---  576 (768)
                      .+.+++++  |++|++|....+.                   ....+.+|..     ....++|||||++|+.++.+   
T Consensus        27 dg~~~~~~--~~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~   85 (740)
T 4a5s_A           27 DHEYLYKQ--ENNILVFNAEYGN-------------------SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQ   85 (740)
T ss_dssp             SSEEEEEE--TTEEEEEETTTCC-------------------EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEEC
T ss_pred             CCcEEEEc--CCcEEEEECCCCc-------------------eEEEEechhhhhhcccccceEECCCCCEEEEEECCeee
Confidence            44677776  8999999654431                   1223444442     23458999999999998876   


Q ss_pred             ------CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCe-------
Q 004207          577 ------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-------  643 (768)
Q Consensus       577 ------g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V-------  643 (768)
                            +.+.+||+.++++. .+..|...+..++|||||+.||.+ .|+.|++||+.++.....+..++...+       
T Consensus        86 ~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~  163 (740)
T 4a5s_A           86 WRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDW  163 (740)
T ss_dssp             SSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCH
T ss_pred             EEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccc
Confidence                  56679999998865 466677889999999999999988 478999999988764332333333322       


Q ss_pred             ----------EEEEEeCCCCeEEEEEeCCC-----------------------------------cEEEEECCC---Ce-
Q 004207          644 ----------MSLDFHPSKEDLLCSCDNNS-----------------------------------EIRYWSINN---GS-  674 (768)
Q Consensus       644 ----------~slafsp~g~~lLaSgs~Dg-----------------------------------~I~iWDl~s---g~-  674 (768)
                                .++.|+|||+.++++...++                                   .|++||+.+   ++ 
T Consensus       164 v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~  243 (740)
T 4a5s_A          164 VYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN  243 (740)
T ss_dssp             HHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC
T ss_pred             cccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc
Confidence                      35899999997765543222                                   588899988   73 


Q ss_pred             --eEEEEe------cCCCeeEEEEecCCCEEEEEEcC----CeEEEEECCCce----EeeecceeEEeecCCCceEEecc
Q 004207          675 --CAGVFK------CQSGATQMRFQPRLGRILAAAIE----NYISILDVETQV----CRLKLQTLELWNMTENKTLTLSA  738 (768)
Q Consensus       675 --~i~~~~------~~~~i~sl~fsp~~~~llags~D----g~I~IwD~~t~~----~~~~~~~I~iwd~~~~~~~~l~~  738 (768)
                        ......      ....+..++|+|++..++.....    ..|.+||+.++.    |....            .+....
T Consensus       244 ~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~------------~l~~~~  311 (740)
T 4a5s_A          244 ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVAR------------QHIEMS  311 (740)
T ss_dssp             CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGG------------CEEEEC
T ss_pred             ceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEE------------Eeeecc
Confidence              332221      23347889999998866655432    257788877765    22111            111124


Q ss_pred             CCCCee-----EEEEeCCCCEEE-EEE-CCCc--EEEe
Q 004207          739 HDKLVS-----SLAASTVNGMVA-SAS-HDKC--VKIW  767 (768)
Q Consensus       739 H~~~I~-----sla~spdg~~La-Sgs-~DG~--V~IW  767 (768)
                      |...|.     .++|+|||+.|+ ..+ .+|.  |++|
T Consensus       312 ~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~  349 (740)
T 4a5s_A          312 TTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYF  349 (740)
T ss_dssp             SSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred             CCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEE
Confidence            554444     788999999776 665 4554  4444

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.57  E-value=1.8e-14  Score=172.34  Aligned_cols=207  Identities=13%  Similarity=0.085  Sum_probs=152.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCC-----EEEEEEcCCCCEEEEEeCC---------CcE
Q 004207          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSAD---------RTV  621 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~-----V~sl~fspdg~~LaTgs~D---------gtI  621 (768)
                      ....++.|+|||.+|+++  |+.|++||+.++++...+.+|...     ..++.|||||++|+.++.+         +.+
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            346689999999999886  899999999999988888777543     2447899999999998876         556


Q ss_pred             EEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CC-----------------
Q 004207          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QS-----------------  683 (768)
Q Consensus       622 rVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~-----------------  683 (768)
                      .+||+.+++.  ..+..|...+..++|+|||+.++++  .|+.|++||+.++........ ..                 
T Consensus        95 ~~~d~~~~~~--~~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           95 DIYDLNKRQL--ITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEETTTTEE--CCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             EEEECCCCcE--EEcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence            7999998763  4466677889999999999977654  378999999988776543221 11                 


Q ss_pred             -CeeEEEEecCCCEEEEEEcCCe-EEEEECCCceE-------ee-----------ecceeEEeecCC---C---ceEEec
Q 004207          684 -GATQMRFQPRLGRILAAAIENY-ISILDVETQVC-------RL-----------KLQTLELWNMTE---N---KTLTLS  737 (768)
Q Consensus       684 -~i~sl~fsp~~~~llags~Dg~-I~IwD~~t~~~-------~~-----------~~~~I~iwd~~~---~---~~~~l~  737 (768)
                       ....+.|+|+|.+|+.++.|.. |.+|++.....       ..           ....|.+||+.+   +   +...+.
T Consensus       171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~  250 (740)
T 4a5s_A          171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT  250 (740)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred             CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence             1134899999999998876544 77776531110       00           011688999988   7   555554


Q ss_pred             c------CCCCeeEEEEeCCCCEEEEEEC----CCcEEEeC
Q 004207          738 A------HDKLVSSLAASTVNGMVASASH----DKCVKIWK  768 (768)
Q Consensus       738 ~------H~~~I~sla~spdg~~LaSgs~----DG~V~IWD  768 (768)
                      .      |...|..++|+||+++++....    +..|++||
T Consensus       251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d  291 (740)
T 4a5s_A          251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICD  291 (740)
T ss_dssp             CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEE
T ss_pred             CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEE
Confidence            3      8888999999999996665543    33677775

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.57  E-value=9.6e-14  Score=160.75  Aligned_cols=182  Identities=10%  Similarity=0.010  Sum_probs=136.9

Q ss_pred             eEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCCee
Q 004207          558 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYS  632 (768)
Q Consensus       558 I~sl~fSpdg~~-LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D----gtIrVWDl~t~~~~  632 (768)
                      +...+|+||++. +++.+.++.+.|||+.+++.......+.   .+++|+|||++|++++.|    +.|++||+.+++. 
T Consensus       112 ~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~-  187 (582)
T 3o4h_A          112 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL-  187 (582)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC-
T ss_pred             ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-
Confidence            456788888863 3333444556699999988765554333   789999999999988877    7899999988764 


Q ss_pred             EEEeecCCCCeEEEEEeCCCCeEEEEEeCCC--cEEEEECCCCeeEEEEec-CCCeeEEE--------EecCCCEEEEEE
Q 004207          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKC-QSGATQMR--------FQPRLGRILAAA  701 (768)
Q Consensus       633 ~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg--~I~iWDl~sg~~i~~~~~-~~~i~sl~--------fsp~~~~llags  701 (768)
                       ..+..|...+.+++|+|||+.++ +++.++  .|++||+.++++. .+.. ...+..++        |+|++..+++++
T Consensus       188 -~~l~~~~~~~~~~~~SpDG~~l~-~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~  264 (582)
T 3o4h_A          188 -RVFDSGEGSFSSASISPGMKVTA-GLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVAR  264 (582)
T ss_dssp             -EEECCSSCEEEEEEECTTSCEEE-EEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEE
T ss_pred             -eEeecCCCccccceECCCCCEEE-EccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEE
Confidence             46778888999999999998666 777788  8999999988877 4443 23345555        999997788888


Q ss_pred             cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCc---EEEeC
Q 004207          702 IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC---VKIWK  768 (768)
Q Consensus       702 ~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~---V~IWD  768 (768)
                      .++.+++|++  ++...                   .+.+.|.+++|+ ++.++++++.+..   |.+||
T Consensus       265 ~~g~~~l~~~--g~~~~-------------------~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d  312 (582)
T 3o4h_A          265 REGRSAVFID--GERVE-------------------APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP  312 (582)
T ss_dssp             ETTEEEEEET--TEEEC-------------------CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred             cCCcEEEEEE--CCeec-------------------cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence            9999999998  33211                   123568899999 8988888887743   55554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.56  E-value=2.5e-13  Score=147.70  Aligned_cols=203  Identities=10%  Similarity=0.007  Sum_probs=146.0

Q ss_pred             EEEecCCCCCeEE-----EEEcCCCCEEEEEeC-CCc--EEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004207          548 FQLIPASTSKVES-----CHFSPDGKLLATGGH-DKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (768)
Q Consensus       548 ~~~l~~H~~~I~s-----l~fSpdg~~LaSgs~-Dg~--I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg  619 (768)
                      +..+..|...+..     .+|+|||++|+.++. ++.  |.+||+.+++......++...+.+++|+||+++|+.++.++
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~  102 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR  102 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred             eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence            4455566655555     889999999998887 663  88889999888877777766666788999999999999999


Q ss_pred             cEEEEECCCCCeeEEEeecCCCCeEEEE--EeCCCCeEEEEE---------------------eCCCcEEEEECCCCeeE
Q 004207          620 TVRVWDTENPDYSLRTFTGHSTTVMSLD--FHPSKEDLLCSC---------------------DNNSEIRYWSINNGSCA  676 (768)
Q Consensus       620 tIrVWDl~t~~~~~~~~~~h~~~V~sla--fsp~g~~lLaSg---------------------s~Dg~I~iWDl~sg~~i  676 (768)
                      .|++||+.+++. ...+..+...+....  +++++..+++..                     ..+..|++||+.+++..
T Consensus       103 ~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~  181 (388)
T 3pe7_A          103 NLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST  181 (388)
T ss_dssp             EEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred             eEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence            999999998775 444454555554444  478887555321                     23468999999999877


Q ss_pred             EEEecCCCeeEEEEec-CCCEEEEEEcCC------eEEEEECCCceEeeecceeEEeecCCCceEEeccCC--CCeeEEE
Q 004207          677 GVFKCQSGATQMRFQP-RLGRILAAAIEN------YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD--KLVSSLA  747 (768)
Q Consensus       677 ~~~~~~~~i~sl~fsp-~~~~llags~Dg------~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~--~~I~sla  747 (768)
                      ........+..+.|+| ++..|+.+..++      .|.++|..+.                 ....+..+.  ..+..++
T Consensus       182 ~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-----------------~~~~l~~~~~~~~~~~~~  244 (388)
T 3pe7_A          182 VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT-----------------NMRKVKTHAEGESCTHEF  244 (388)
T ss_dssp             EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC-----------------CCEESCCCCTTEEEEEEE
T ss_pred             EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC-----------------ceEEeeeCCCCcccccce
Confidence            7666677789999999 988888777532      4555555432                 222333333  2477889


Q ss_pred             EeCCCCEEEEEEC-CC----cEEEeC
Q 004207          748 ASTVNGMVASASH-DK----CVKIWK  768 (768)
Q Consensus       748 ~spdg~~LaSgs~-DG----~V~IWD  768 (768)
                      |+|+|+.|+..+. ++    .|++||
T Consensus       245 ~spdg~~l~~~~~~~~~~~~~l~~~d  270 (388)
T 3pe7_A          245 WVPDGSALVYVSYLKGSPDRFIYSAD  270 (388)
T ss_dssp             ECTTSSCEEEEEEETTCCCEEEEEEC
T ss_pred             ECCCCCEEEEEecCCCCCcceEEEEe
Confidence            9999997765443 22    388886

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.54  E-value=1.4e-14  Score=171.97  Aligned_cols=203  Identities=13%  Similarity=0.090  Sum_probs=142.3

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC---CEEEEEEcCCCCEEEEEeC---------CCcEEEEECC
Q 004207          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSA---------DRTVRVWDTE  627 (768)
Q Consensus       560 sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~---~V~sl~fspdg~~LaTgs~---------DgtIrVWDl~  627 (768)
                      +++|+|||.++++ +.|+.|++||+.+++....+..|..   .|.+++|+|||++|++++.         +++|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            6899999965554 4699999999999998877765543   3899999999999999876         7899999998


Q ss_pred             CCCeeE-EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-C------------------CeeE
Q 004207          628 NPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-S------------------GATQ  687 (768)
Q Consensus       628 t~~~~~-~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-~------------------~i~s  687 (768)
                      +++... ..+   ...+.+++|+|+|+.++++ . ++.|++||+.++++....... .                  ...+
T Consensus        99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~-~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~  173 (719)
T 1z68_A           99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYV-Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA  173 (719)
T ss_dssp             TTEECCSSCC---CSSBCCEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred             CCccccceec---CcccccceECCCCCEEEEE-E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence            865310 122   2568899999999876644 3 789999999988765433211 1                  1248


Q ss_pred             EEEecCCCEEEEEEcC-CeEEEEECCCc-----eEee-----------ecceeEEeecCCCceE---E------eccCCC
Q 004207          688 MRFQPRLGRILAAAIE-NYISILDVETQ-----VCRL-----------KLQTLELWNMTENKTL---T------LSAHDK  741 (768)
Q Consensus       688 l~fsp~~~~llags~D-g~I~IwD~~t~-----~~~~-----------~~~~I~iwd~~~~~~~---~------l~~H~~  741 (768)
                      ++|+|+|.+|++++.| +.+.+|.+...     ....           ....|.+||+.++...   .      +.+|..
T Consensus       174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  253 (719)
T 1z68_A          174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY  253 (719)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred             EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence            9999999999988765 33333322100     0000           1115778888776641   2      236888


Q ss_pred             CeeEEEEeCCCCEEEEEECC--C--cEEEeC
Q 004207          742 LVSSLAASTVNGMVASASHD--K--CVKIWK  768 (768)
Q Consensus       742 ~I~sla~spdg~~LaSgs~D--G--~V~IWD  768 (768)
                      .|.+++|+||+.++++....  +  .|.+||
T Consensus       254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             EEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred             eEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence            89999999998777775432  2  366664

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.52  E-value=3e-12  Score=136.58  Aligned_cols=210  Identities=10%  Similarity=0.089  Sum_probs=148.6

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC----CcEEE
Q 004207          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRV  623 (768)
Q Consensus       548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D----gtIrV  623 (768)
                      +..+..+...+.+++|+++|++++++..++.|.+||.++++.......+...+.+++|+++++++++...+    +.|.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred             eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence            44555677778999999999988888889999999998887765554566789999999999888877666    68999


Q ss_pred             EECCCCCeeEEEee--cCCCCeEEEEEeCCCCeEEEEEeC------CCcEEEEECCCCeeEEEEecCCCeeEEEEecCCC
Q 004207          624 WDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG  695 (768)
Q Consensus       624 WDl~t~~~~~~~~~--~h~~~V~slafsp~g~~lLaSgs~------Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~  695 (768)
                      ||.+++... ..+.  .+...+.+++++|++. ++++...      .+.|..||..+++..........+..++|+|++.
T Consensus       117 ~d~~~~~~~-~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          117 ATENGDNLQ-DIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK  194 (333)
T ss_dssp             ECTTSCSCE-EEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred             EeCCCCEEE-EEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCC
Confidence            999876642 2222  2445789999999986 4444432      3567777766555544434345678899999988


Q ss_pred             EEEEEE-cCCeEEEEECCC-ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          696 RILAAA-IENYISILDVET-QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       696 ~llags-~Dg~I~IwD~~t-~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .++++. .++.|.+||+.+ +.....+.. .+       ...+.++ ..+..+++++++.++++...++.|.+||
T Consensus       195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~-~~-------~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d  260 (333)
T 2dg1_A          195 VLWVTETTANRLHRIALEDDGVTIQPFGA-TI-------PYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFN  260 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEE-EE-------EEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             EEEEEeCCCCeEEEEEecCCCcCcccccc-eE-------EEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEEC
Confidence            776655 578999999864 221111100 00       0111122 4578899999999888887888999986

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.49  E-value=1.2e-12  Score=143.18  Aligned_cols=211  Identities=10%  Similarity=0.144  Sum_probs=140.3

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeEEEEeccC------CCCEEEEEEcCCCCEEE
Q 004207          550 LIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH------TQWITDVRFSPSLSRLA  613 (768)
Q Consensus       550 ~l~~H~~~I~sl~fSpdg~~LaSgs~----------Dg~I~VWdl~t~~~~~tl~~h------~~~V~sl~fspdg~~La  613 (768)
                      .+..+..+  .++|+|||++|++++.          ++.|.+||..+++.+.++...      ......++|+|++++|+
T Consensus        46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~  123 (361)
T 2oiz_A           46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV  123 (361)
T ss_dssp             EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred             EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence            34444444  8999999999998863          678999999999988877542      23567899999999999


Q ss_pred             EEeC--CCcEEEEECCCCCeeEEE-eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-CeeEEEEe------cCC
Q 004207          614 TSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFK------CQS  683 (768)
Q Consensus       614 Tgs~--DgtIrVWDl~t~~~~~~~-~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~------~~~  683 (768)
                      ++..  +++|.+||+.+++. +.. +. +. ....+.+.|++...+++.+.||.+.+|++.. ++......      ...
T Consensus       124 v~n~~~~~~v~v~d~~~~~~-~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~  200 (361)
T 2oiz_A          124 LQNASPATSIGIVDVAKGDY-VEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKD  200 (361)
T ss_dssp             EEEESSSEEEEEEETTTTEE-EEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTT
T ss_pred             EECCCCCCeEEEEECCCCcE-EEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCC
Confidence            9874  57999999998754 444 33 22 2334667888766777888899999998865 54442211      111


Q ss_pred             CeeEEEEecCCCEEEEEEcCCeEEEEECCCceE--------------------------e-ee-----------------
Q 004207          684 GATQMRFQPRLGRILAAAIENYISILDVETQVC--------------------------R-LK-----------------  719 (768)
Q Consensus       684 ~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~--------------------------~-~~-----------------  719 (768)
                      ....+.+++++..++..+.++.|.++|+.....                          . ..                 
T Consensus       201 ~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~  280 (361)
T 2oiz_A          201 DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT  280 (361)
T ss_dssp             SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred             CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence            111222344444555555555566665532100                          0 00                 


Q ss_pred             ----cceeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          720 ----LQTLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       720 ----~~~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                          -..|.+||..+.+.+ ++..+.  +.+|+|+|++++|++++. +.|.|||
T Consensus       281 ~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D  331 (361)
T 2oiz_A          281 HKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYD  331 (361)
T ss_dssp             TTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEE
T ss_pred             ccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEE
Confidence                013556676666655 344454  999999999999998887 9999997

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.48  E-value=7.3e-13  Score=155.39  Aligned_cols=196  Identities=11%  Similarity=0.078  Sum_probs=132.3

Q ss_pred             EEEEc--CCCCE-EEEEeC-CCcEEEEECC--C-CeEEEEecc-----CCCCEEEEEEcCCCCEEEEEeCC---------
Q 004207          560 SCHFS--PDGKL-LATGGH-DKKAVLWCTE--S-FTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD---------  618 (768)
Q Consensus       560 sl~fS--pdg~~-LaSgs~-Dg~I~VWdl~--t-~~~~~tl~~-----h~~~V~sl~fspdg~~LaTgs~D---------  618 (768)
                      .+.|+  |||++ |+.++. +..|.+|++.  + ++ ...+..     |...+.+++|+|||+.|++++.|         
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~  159 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV  159 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence            45555  99998 776554 5567777765  2 33 445555     66788999999999999998877         


Q ss_pred             -CcEEEEECCC------CCeeEEEee-cCCCCeEEEEEeCCCCeEEEEEeCC-------CcEEEEECC-CC---eeEEEE
Q 004207          619 -RTVRVWDTEN------PDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSIN-NG---SCAGVF  679 (768)
Q Consensus       619 -gtIrVWDl~t------~~~~~~~~~-~h~~~V~slafsp~g~~lLaSgs~D-------g~I~iWDl~-sg---~~i~~~  679 (768)
                       ..|++||+.+      +.  ...+. .+...+.+++|+|||+.+++++...       ..|++||+. ++   +.....
T Consensus       160 ~~~i~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~  237 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSA--VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL  237 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGG--SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred             eeEEEEEECCCCccccCCc--eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence             5899999987      43  34555 5667788899999999776555432       479999999 57   444444


Q ss_pred             ec-CCCeeEEEEecCCCEEEEEEcCC--eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEE
Q 004207          680 KC-QSGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA  756 (768)
Q Consensus       680 ~~-~~~i~sl~fsp~~~~llags~Dg--~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~La  756 (768)
                      .. ...+..++|+|++..++++..++  .|.+||+.++......      .... .. ....-.-.+.+++|++++.+++
T Consensus       238 ~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~------~~~~-~~-~~p~w~~~~~~~~~~~~~~~~~  309 (662)
T 3azo_A          238 GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLC------RREE-EF-AGPLWTPGMRWFAPLANGLIAV  309 (662)
T ss_dssp             EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESS------CCSS-BS-SCCCCSTTCCSEEECTTSCEEE
T ss_pred             CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecc------cccc-cc-cCccccccCceEeEeCCCEEEE
Confidence            43 46788999999999666666667  5666665444322110      0000 00 0000001156789999999999


Q ss_pred             EEECCCcEEEe
Q 004207          757 SASHDKCVKIW  767 (768)
Q Consensus       757 Sgs~DG~V~IW  767 (768)
                      +++. +.++||
T Consensus       310 ~~~~-~~~~l~  319 (662)
T 3azo_A          310 VHGK-GAAVLG  319 (662)
T ss_dssp             EEBS-SSCEEE
T ss_pred             EEEc-CccEEE
Confidence            9998 999988

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.47  E-value=1e-11  Score=130.60  Aligned_cols=219  Identities=12%  Similarity=0.038  Sum_probs=151.8

Q ss_pred             cCCCC-EEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004207          503 TDMDR-FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (768)
Q Consensus       503 ~~~~~-~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~V  581 (768)
                      ++.+. ++.++..++.|..|....                +     +..+..+...+.+++|+++|+++++...++.|.+
T Consensus        36 d~~g~~l~~~~~~~~~i~~~~~~~----------------~-----~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~   94 (296)
T 3e5z_A           36 VPARSAVIFSDVRQNRTWAWSDDG----------------Q-----LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER   94 (296)
T ss_dssp             EGGGTEEEEEEGGGTEEEEEETTS----------------C-----EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred             eCCCCEEEEEeCCCCEEEEEECCC----------------C-----eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence            33444 777888888888884321                1     1223356677999999999998887777789999


Q ss_pred             EECCCCeEEEEeccC----CCCEEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCCeeEEEeecCC
Q 004207          582 WCTESFTVKSTLEEH----TQWITDVRFSPSLSRLATSSA-----------------DRTVRVWDTENPDYSLRTFTGHS  640 (768)
Q Consensus       582 Wdl~t~~~~~tl~~h----~~~V~sl~fspdg~~LaTgs~-----------------DgtIrVWDl~t~~~~~~~~~~h~  640 (768)
                      ||..+++........    ...+.+++++|+|+++++.+.                 .+.|..|+.. +.  +..+..+.
T Consensus        95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~  171 (296)
T 3e5z_A           95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--LSAPIRDR  171 (296)
T ss_dssp             ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--EEEEECCC
T ss_pred             EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC--EEEeecCC
Confidence            999887765443221    234678999999998887431                 2345555544 33  44455566


Q ss_pred             CCeEEEEEeCCCCeEEEEEeCCCcEEEEECC-CCee---EEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004207          641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSC---AGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQV  715 (768)
Q Consensus       641 ~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~-sg~~---i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~  715 (768)
                      ..+..++|+|+++.+ ++.+.++.|.+||+. ++..   ...+. ....+..+++++++..+++.  ++.|.+||... .
T Consensus       172 ~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g-~  247 (296)
T 3e5z_A          172 VKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDG-D  247 (296)
T ss_dssp             SSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTS-C
T ss_pred             CCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCC-C
Confidence            778999999999876 788888999999997 5554   33331 13446789999998755444  88899998763 2


Q ss_pred             EeeecceeEEeecCCCceEEeccCCCCeeEEEE-eCCCCEEEEEECCCcEEE
Q 004207          716 CRLKLQTLELWNMTENKTLTLSAHDKLVSSLAA-STVNGMVASASHDKCVKI  766 (768)
Q Consensus       716 ~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~-spdg~~LaSgs~DG~V~I  766 (768)
                      ..                ..+..+.. +++++| .++++.|++++.++.+++
T Consensus       248 ~~----------------~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~  282 (296)
T 3e5z_A          248 EL----------------GRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI  282 (296)
T ss_dssp             EE----------------EEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred             EE----------------EEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence            21                12234555 899999 588899999998876654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.46  E-value=1.2e-12  Score=141.92  Aligned_cols=208  Identities=10%  Similarity=0.030  Sum_probs=141.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEE-------------------EEEcCCCCEEEEE---
Q 004207          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-------------------VRFSPSLSRLATS---  615 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~s-------------------l~fspdg~~LaTg---  615 (768)
                      +.++.|+|||++|+.++.++.|++||+.+++.......+......                   +.|+|+++.++.+   
T Consensus        83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~  162 (396)
T 3c5m_A           83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY  162 (396)
T ss_dssp             TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred             cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence            334789999999999999999999999988876665545443333                   4567887776654   


Q ss_pred             --eCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeC-CCCeEEEEEeCC-----CcEEEEECCCCeeEEEEec--CCCe
Q 004207          616 --SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC--QSGA  685 (768)
Q Consensus       616 --s~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp-~g~~lLaSgs~D-----g~I~iWDl~sg~~i~~~~~--~~~i  685 (768)
                        ..+..|++||+.+++.  ..+..+...+..+.|+| ++..++++....     ..|.+||+..+........  ...+
T Consensus       163 ~~~~~~~l~~~d~~~g~~--~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~  240 (396)
T 3c5m_A          163 HTNPTCRLIKVDIETGEL--EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESC  240 (396)
T ss_dssp             HTCCCEEEEEEETTTCCE--EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEE
T ss_pred             cCCCcceEEEEECCCCcE--EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccc
Confidence              3567899999988764  23334667899999999 666555544322     4688999876654333222  1236


Q ss_pred             eEEEEecCCCEEEEEEcC-----CeEEEEECCCceEee--e-----------c--------------------------c
Q 004207          686 TQMRFQPRLGRILAAAIE-----NYISILDVETQVCRL--K-----------L--------------------------Q  721 (768)
Q Consensus       686 ~sl~fsp~~~~llags~D-----g~I~IwD~~t~~~~~--~-----------~--------------------------~  721 (768)
                      ..++|+|++.+|++++.+     +.|++||+.++....  .           .                          .
T Consensus       241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~  320 (396)
T 3c5m_A          241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP  320 (396)
T ss_dssp             EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEEEEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred             cceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCCCCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence            778999999988777654     449999987653211  0           0                          2


Q ss_pred             eeEEeecCCCceEEeccCCC-----------CeeEEEEeCCCCEEEEEEC-CCcEEEe
Q 004207          722 TLELWNMTENKTLTLSAHDK-----------LVSSLAASTVNGMVASASH-DKCVKIW  767 (768)
Q Consensus       722 ~I~iwd~~~~~~~~l~~H~~-----------~I~sla~spdg~~LaSgs~-DG~V~IW  767 (768)
                      .|.+||+.++....+..|..           .+.+++|+|++++|+.++. ++...||
T Consensus       321 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~  378 (396)
T 3c5m_A          321 FLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIY  378 (396)
T ss_dssp             EEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred             cEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEE
Confidence            35566766665555555544           2567899999998877765 5666665

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.46  E-value=8.3e-12  Score=128.63  Aligned_cols=194  Identities=6%  Similarity=-0.065  Sum_probs=138.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 004207          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~  635 (768)
                      ..+.+++++++|+++++.. ++.|.+||..+.............+.+++++++++++++...++.|.+|+..+... ...
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-~~~  144 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-TVL  144 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC-EEC
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee-Eee
Confidence            4578899999999666655 88999999876544322222335789999999998887777788999998665443 222


Q ss_pred             eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004207          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (768)
Q Consensus       636 ~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~  714 (768)
                      .......+.+|++++++. ++++...++.|.+||............ ...+..+++++++..+++...++.|.+||..+.
T Consensus       145 ~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          145 PFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             CCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             ccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence            222334678999999886 666766678999999887654433222 256789999999855555556788999988654


Q ss_pred             eEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          715 VCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       715 ~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ....                ....+...+.++++++++.++++...++.|++|+
T Consensus       224 ~~~~----------------~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~  261 (270)
T 1rwi_B          224 TSTV----------------LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  261 (270)
T ss_dssp             CCEE----------------CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             ccee----------------eccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence            3211                0112335689999999999888888899999985

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.46  E-value=2.5e-12  Score=150.81  Aligned_cols=194  Identities=9%  Similarity=0.064  Sum_probs=136.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC----------CcEEEEECCC------CeEEEEec-cCCCCEEEEEEcCCCCEEEEEe
Q 004207          554 STSKVESCHFSPDGKLLATGGHD----------KKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSS  616 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~D----------g~I~VWdl~t------~~~~~tl~-~h~~~V~sl~fspdg~~LaTgs  616 (768)
                      |...+.+++|+|||+.|++++.|          ..|++||+.+      ++.. .+. .+...+..++|+|||++|+.++
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~  206 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLA  206 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEE
Confidence            56678999999999999988877          5899999988      5543 555 5567788999999999999887


Q ss_pred             CCC--------cEEEEECC-CCC--eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCC
Q 004207          617 ADR--------TVRVWDTE-NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQS  683 (768)
Q Consensus       617 ~Dg--------tIrVWDl~-t~~--~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg--~I~iWDl~sg~~i~~~~~~~  683 (768)
                      .++        .|++||++ ++.  .......+|...+..++|+|+|+ ++++++.++  .|.+||+.+++....+..+.
T Consensus       207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~  285 (662)
T 3azo_A          207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREE  285 (662)
T ss_dssp             ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSS
T ss_pred             CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccc
Confidence            553        79999998 452  33444455678899999999998 777888888  67777776776554433322


Q ss_pred             C---------eeEEEEecCCCEEEEEEcCCeEEEE--ECCCceEeeecceeEEeecCCCceEEeccCCCCeeEE-EEeCC
Q 004207          684 G---------ATQMRFQPRLGRILAAAIENYISIL--DVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSL-AASTV  751 (768)
Q Consensus       684 ~---------i~sl~fsp~~~~llags~Dg~I~Iw--D~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sl-a~spd  751 (768)
                      .         +..++|++++..++++.. +.+.||  |+.++                 ....+..|...+..+ +++.+
T Consensus       286 ~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~-----------------~~~~l~~~~~~~~~~~s~~~~  347 (662)
T 3azo_A          286 EFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG-----------------ELVDAAGPWTEWAATLTVSGT  347 (662)
T ss_dssp             BSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT-----------------EEEECCSSCCEEEEEEEEETT
T ss_pred             cccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC-----------------cEEEecCCCCeEEEEEecCCC
Confidence            2         456888888887777777 877777  43332                 233344566667766 55544


Q ss_pred             CCEEEEEECCCcEEEe
Q 004207          752 NGMVASASHDKCVKIW  767 (768)
Q Consensus       752 g~~LaSgs~DG~V~IW  767 (768)
                      .-++++++.+....||
T Consensus       348 ~~~~~~~~~~~~~~i~  363 (662)
T 3azo_A          348 RAVGVAASPRTAYEVV  363 (662)
T ss_dssp             EEEEEEEETTEEEEEE
T ss_pred             EEEEEEcCCCCCCEEE
Confidence            3345555666555554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.46  E-value=3.6e-11  Score=128.16  Aligned_cols=228  Identities=8%  Similarity=0.022  Sum_probs=150.4

Q ss_pred             ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----C
Q 004207          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD----K  577 (768)
Q Consensus       502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D----g  577 (768)
                      +++.+.+++++..++.|.+|.....                 .+..  ....+...|.+++|+++|++++++..+    +
T Consensus        52 ~~~~g~l~~~~~~~~~i~~~d~~~~-----------------~~~~--~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~  112 (333)
T 2dg1_A           52 FDRQGQLFLLDVFEGNIFKINPETK-----------------EIKR--PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTG  112 (333)
T ss_dssp             ECTTSCEEEEETTTCEEEEECTTTC-----------------CEEE--EEECSSSSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred             ECCCCCEEEEECCCCEEEEEeCCCC-----------------cEEE--EeeCCCCCcceEEECCCCcEEEEeCCCCCCCc
Confidence            3455667777888888888843221                 1111  112455679999999999988877666    6


Q ss_pred             cEEEEECCCCeEEEEec--cCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCCeeEEEeecCCCCeEEEEEe
Q 004207          578 KAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH  649 (768)
Q Consensus       578 ~I~VWdl~t~~~~~tl~--~h~~~V~sl~fspdg~~LaTgs~------DgtIrVWDl~t~~~~~~~~~~h~~~V~slafs  649 (768)
                      .|.+||.++++....+.  .+...+.+++++|+++++++...      .+.|..||.++++.  ..+..+...+.+++|+
T Consensus       113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~  190 (333)
T 2dg1_A          113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV--TPIIQNISVANGIALS  190 (333)
T ss_dssp             EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE--EEEEEEESSEEEEEEC
T ss_pred             eEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE--EEeecCCCcccceEEC
Confidence            89999998876653432  24457999999999988777654      24566666654443  2232334468899999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCC-CeeEEEE------ec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeec
Q 004207          650 PSKEDLLCSCDNNSEIRYWSINN-GSCAGVF------KC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL  720 (768)
Q Consensus       650 p~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~------~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~  720 (768)
                      |+++.++++.+.++.|.+||+.+ +..+..+      ..  ...+..+++++++..+++...++.|.+||... ...   
T Consensus       191 ~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g-~~~---  266 (333)
T 2dg1_A          191 TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG-YPI---  266 (333)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS-CEE---
T ss_pred             CCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCC-CEE---
Confidence            99887777777788999999964 3332211      11  23577899999988777666788999998843 221   


Q ss_pred             ceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207          721 QTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD  761 (768)
Q Consensus       721 ~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D  761 (768)
                         ..+.....    ..+|...+.+++|+++++.|++++.+
T Consensus       267 ---~~~~~~~~----~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          267 ---GQILIPGR----DEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             ---EEEECTTG----GGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             ---EEEEcCCC----ccccccCcceEEECCCCCEEEEEeCc
Confidence               11111100    01233368999999998777766655

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.45  E-value=1.5e-11  Score=128.38  Aligned_cols=196  Identities=8%  Similarity=0.136  Sum_probs=142.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec------cCCCCEEEEEE-cCCCCEEEEEeC-CCcEEEE
Q 004207          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQWITDVRF-SPSLSRLATSSA-DRTVRVW  624 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~------~h~~~V~sl~f-spdg~~LaTgs~-DgtIrVW  624 (768)
                      ++-..+.++++++++.++++...++.|.+||.+ ++.+..+.      ++...+.++++ .+++.++++... ++.|++|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            455678999999999988888889999999987 56666653      23457899999 467666665533 8899999


Q ss_pred             ECCCCCeeEEEee-cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEEE
Q 004207          625 DTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAA  700 (768)
Q Consensus       625 Dl~t~~~~~~~~~-~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~llag  700 (768)
                      |. +++. +..+. .+...+.++++++++. ++++...++.|.+||.. ++.+..+..   ...+..+++++++..+++.
T Consensus       106 d~-~g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~  181 (286)
T 1q7f_A          106 NQ-YGQF-VRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD  181 (286)
T ss_dssp             CT-TSCE-EEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred             CC-CCcE-EEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence            94 4444 44443 3446789999999986 77677778899999964 666666643   2457899999997755555


Q ss_pred             EcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC-cEEEeC
Q 004207          701 AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK-CVKIWK  768 (768)
Q Consensus       701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG-~V~IWD  768 (768)
                      ..++.|.+||..... ..      .+.        ..++...+..|++++++.++++...++ .|.+||
T Consensus       182 ~~~~~i~~~~~~g~~-~~------~~~--------~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~  235 (286)
T 1q7f_A          182 NRAHCVKVFNYEGQY-LR------QIG--------GEGITNYPIGVGINSNGEILIADNHNNFNLTIFT  235 (286)
T ss_dssp             GGGTEEEEEETTCCE-EE------EES--------CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred             CCCCEEEEEcCCCCE-EE------EEc--------cCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence            668899999975421 11      110        012335688999999999888888776 999996

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.44  E-value=3.3e-11  Score=126.94  Aligned_cols=189  Identities=13%  Similarity=0.057  Sum_probs=145.5

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWC  583 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~I~sl~fSpdg~~LaSgs~Dg~I~VWd  583 (768)
                      .+.+|++++.|+.|.+|+..++                   +.+..+..+. ..+.++.++|+|++|+  +.++.|.+||
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG-------------------~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d   62 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTK-------------------EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMIT   62 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTT-------------------EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCC-------------------eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEEC
Confidence            4678999999999999954333                   1233344444 4689999999999888  4577899999


Q ss_pred             CCCCeEEEEeccCC-CCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCeeEEEee------cCCCCeEEEEEeCCCCeE
Q 004207          584 TESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDL  655 (768)
Q Consensus       584 l~t~~~~~tl~~h~-~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~t~~~~~~~~~------~h~~~V~slafsp~g~~l  655 (768)
                      . +++.+..+..+. ..+.++.+.+++++|++.+. ++.|..+|. +++. +..+.      .+......+++.++|+ +
T Consensus        63 ~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G~-~  138 (276)
T 3no2_A           63 R-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEV-LSKTEFETGIERPHAQFRQINKNKKGN-Y  138 (276)
T ss_dssp             T-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCE-EEEEEECCSCSSGGGSCSCCEECTTSC-E
T ss_pred             C-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCE-EEEEeccCCCCcccccccCceECCCCC-E
Confidence            9 899999887653 47889999999999999887 777877776 3443 33332      1222455667888877 5


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207          656 LCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK  719 (768)
Q Consensus       656 LaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~  719 (768)
                      +++...++.|.+||.. |+.+..+.....+..+.+.+++..++++..++.|..||..+++.+..
T Consensus       139 lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~  201 (276)
T 3no2_A          139 LVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRR  201 (276)
T ss_dssp             EEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEE
T ss_pred             EEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEE
Confidence            6688889999999998 99999998777777888899988888888888999999998766443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.44  E-value=4.4e-13  Score=145.49  Aligned_cols=194  Identities=11%  Similarity=-0.014  Sum_probs=133.1

Q ss_pred             CeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 004207          557 KVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~D---g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~  633 (768)
                      .+.+++|+|||++|+.+..+   ..|.+||+.+++.......+...+..+.|+||+++|+.++.++.|++||+.+++. .
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-~  115 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE-Q  115 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-E
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-E
Confidence            37788999999998876543   3688899998876544443333333478999999999999999999999988764 3


Q ss_pred             EEeecCCCCeEE-------------------EEEeCCCCeEEEEE----eCCCcEEEEECCCCeeEEEEecCCCeeEEEE
Q 004207          634 RTFTGHSTTVMS-------------------LDFHPSKEDLLCSC----DNNSEIRYWSINNGSCAGVFKCQSGATQMRF  690 (768)
Q Consensus       634 ~~~~~h~~~V~s-------------------lafsp~g~~lLaSg----s~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~f  690 (768)
                      .....+......                   ++|+|+++.+++..    ..+..|++||+.+++..........+..+.|
T Consensus       116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~  195 (396)
T 3c5m_A          116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIY  195 (396)
T ss_dssp             EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEE
T ss_pred             EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceE
Confidence            333333332222                   34567766554332    4567899999999887777666777899999


Q ss_pred             ec-CCCEEEEEEcCC------eEEEEECCCceEeeecceeEEeecCCCceEEeccC--CCCeeEEEEeCCCCEEEEEECC
Q 004207          691 QP-RLGRILAAAIEN------YISILDVETQVCRLKLQTLELWNMTENKTLTLSAH--DKLVSSLAASTVNGMVASASHD  761 (768)
Q Consensus       691 sp-~~~~llags~Dg------~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H--~~~I~sla~spdg~~LaSgs~D  761 (768)
                      +| ++..|+.++.++      .|.+||+.+                 +....+..+  ...+..++|+|++++|+.++.+
T Consensus       196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-----------------~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~  258 (396)
T 3c5m_A          196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDG-----------------SNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYF  258 (396)
T ss_dssp             ETTEEEEEEEEECSCSSSCSCCCEEEETTS-----------------CCCEESSCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred             CCCCCCEEEEEecCCCCCCCceEEEEECCC-----------------CceeEeeccCCCccccceEECCCCCEEEEEecC
Confidence            99 777777766432      355555543                 222222222  2247889999999987777654


Q ss_pred             -----CcEEEeC
Q 004207          762 -----KCVKIWK  768 (768)
Q Consensus       762 -----G~V~IWD  768 (768)
                           +.|++||
T Consensus       259 ~~~~~~~l~~~d  270 (396)
T 3c5m_A          259 KGQTDRVIYKAN  270 (396)
T ss_dssp             TTTCCEEEEEEC
T ss_pred             CCCccceEEEEE
Confidence                 4488886

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.42  E-value=1.1e-11  Score=132.50  Aligned_cols=145  Identities=19%  Similarity=0.230  Sum_probs=99.9

Q ss_pred             CCeEEEEEcCCCCEEEEEeCC---C--cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC------------
Q 004207          556 SKVESCHFSPDGKLLATGGHD---K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------------  618 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~D---g--~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D------------  618 (768)
                      ..+.+++|||||++|+.++.+   +  .|.+|++.+++.......+ . +.+++|+||++.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            458899999999998887654   3  3888899888766555433 3 9999999999988888642            


Q ss_pred             ---------------CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC-------cEEEEECCCCeeE
Q 004207          619 ---------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-------EIRYWSINNGSCA  676 (768)
Q Consensus       619 ---------------gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg-------~I~iWDl~sg~~i  676 (768)
                                     ..|++||+.+++. +..+.. . .+..++|+|+|  +++++..+.       ...||.+.+++..
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  211 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKEE  211 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEEE
T ss_pred             cceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCceE
Confidence                           5799999987664 233333 3 78899999998  555654432       3344443356554


Q ss_pred             EEEecCCCeeEEEEecCCCEEEEEEcCC--------eEEEEE
Q 004207          677 GVFKCQSGATQMRFQPRLGRILAAAIEN--------YISILD  710 (768)
Q Consensus       677 ~~~~~~~~i~sl~fsp~~~~llags~Dg--------~I~IwD  710 (768)
                      ..... ..+..  ++|++.+|++++.+.        .|.+||
T Consensus       212 ~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d  250 (347)
T 2gop_A          212 KMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD  250 (347)
T ss_dssp             EEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred             EeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC
Confidence            44433 33433  499999888877543        566666

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.39  E-value=3.6e-11  Score=126.37  Aligned_cols=199  Identities=10%  Similarity=0.051  Sum_probs=141.3

Q ss_pred             EecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207          550 LIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (768)
Q Consensus       550 ~l~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t  628 (768)
                      .+..+.....+++|+|+++ +++++..++.|.+||..++  ...+..+...+.+++|+++++++++...++.|.+||..+
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~   99 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG   99 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence            3445666789999999998 7888888999999999887  556666778899999999999888777778999999977


Q ss_pred             CCeeEEEeec----CCCCeEEEEEeCCCCeEEEE----Ee-------------CCCcEEEEECCCCeeEEEEecCCCeeE
Q 004207          629 PDYSLRTFTG----HSTTVMSLDFHPSKEDLLCS----CD-------------NNSEIRYWSINNGSCAGVFKCQSGATQ  687 (768)
Q Consensus       629 ~~~~~~~~~~----h~~~V~slafsp~g~~lLaS----gs-------------~Dg~I~iWDl~sg~~i~~~~~~~~i~s  687 (768)
                      ++... ....    ....+.+++++|+|. ++++    |.             ..+.|..||.. ++.............
T Consensus       100 g~~~~-~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g  176 (296)
T 3e5z_A          100 GEWES-IADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG  176 (296)
T ss_dssp             CCEEE-EECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE
T ss_pred             CcEEE-EeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc
Confidence            76422 2111    123467899999987 5555    22             13456666665 554444444456788


Q ss_pred             EEEecCCCEEEEEEcCCeEEEEECC-CceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207          688 MRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  766 (768)
Q Consensus       688 l~fsp~~~~llags~Dg~I~IwD~~-t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~I  766 (768)
                      ++|+|++..+++.+.++.|.+||+. ++....   ..+++          ..+...+.+++++++|.++++.  ++.|.+
T Consensus       177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~---~~~~~----------~~~~~~p~~i~~d~~G~l~v~~--~~~v~~  241 (296)
T 3e5z_A          177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEY---QGVHF----------TVEPGKTDGLRVDAGGLIWASA--GDGVHV  241 (296)
T ss_dssp             EEECTTSCEEEEETTTTEEEEEEECSSSCEEE---EEEEE----------CCSSSCCCSEEEBTTSCEEEEE--TTEEEE
T ss_pred             EEECCCCCEEEEeCCCCeEEEEEECCCCcCcC---CCeEe----------eCCCCCCCeEEECCCCCEEEEc--CCeEEE
Confidence            9999999988555667899999986 332200   01111          1244567789999999866665  788888


Q ss_pred             eC
Q 004207          767 WK  768 (768)
Q Consensus       767 WD  768 (768)
                      ||
T Consensus       242 ~~  243 (296)
T 3e5z_A          242 LT  243 (296)
T ss_dssp             EC
T ss_pred             EC
Confidence            86

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.37  E-value=4.1e-11  Score=142.48  Aligned_cols=194  Identities=6%  Similarity=-0.033  Sum_probs=133.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCc----------------EEEEECCCCe----EEEEeccCCCCEEEEEEcCCCCEEEEEeC
Q 004207          558 VESCHFSPDGKLLATGGHDKK----------------AVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSA  617 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~Dg~----------------I~VWdl~t~~----~~~tl~~h~~~V~sl~fspdg~~LaTgs~  617 (768)
                      +.+++|+|||+.|+.++.++.                |++|++.++.    .+.....|...+..+.|+||+++|+.++.
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~  252 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence            678999999999999888766                9999998765    22232335566889999999999888765


Q ss_pred             -----CCcEEEEECCC------CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC---CcEEEEECCCCee---EEEEe
Q 004207          618 -----DRTVRVWDTEN------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSC---AGVFK  680 (768)
Q Consensus       618 -----DgtIrVWDl~t------~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D---g~I~iWDl~sg~~---i~~~~  680 (768)
                           +..|++||+.+      +......+..+...+.. .|+++|+.+++.+..+   +.|.+||+.++..   ...+.
T Consensus       253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~  331 (710)
T 2xdw_A          253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP  331 (710)
T ss_dssp             CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred             ccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC
Confidence                 56899999986      43235566666666655 4888888887776543   3799999987642   23333


Q ss_pred             cCC--CeeEEEEecCCCEEEEEEcCCe--EEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEE
Q 004207          681 CQS--GATQMRFQPRLGRILAAAIENY--ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA  756 (768)
Q Consensus       681 ~~~--~i~sl~fsp~~~~llags~Dg~--I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~La  756 (768)
                      ...  .+..++|++++..+++...++.  |.+||+.++...                ..+..+.+.|..++++|++..|+
T Consensus       332 ~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~----------------~~l~~~~~~v~~~~~s~d~~~l~  395 (710)
T 2xdw_A          332 EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL----------------KIFPLEVGSVVGYSGQKKDTEIF  395 (710)
T ss_dssp             CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE----------------EEECCCSSEEEEEECCTTCSEEE
T ss_pred             CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE----------------EecCCCCceEEEEecCCCCCEEE
Confidence            322  4777889876566666667774  445555443321                22334566788899999887555


Q ss_pred             EE-E---CCCcEEEeC
Q 004207          757 SA-S---HDKCVKIWK  768 (768)
Q Consensus       757 Sg-s---~DG~V~IWD  768 (768)
                      .. +   ..+.|++||
T Consensus       396 ~~~ss~~~P~~i~~~d  411 (710)
T 2xdw_A          396 YQFTSFLSPGIIYHCD  411 (710)
T ss_dssp             EEEECSSCCCEEEEEE
T ss_pred             EEEeCCCCCCEEEEEE
Confidence            33 2   246777775

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.37  E-value=2.3e-11  Score=144.57  Aligned_cols=198  Identities=11%  Similarity=0.012  Sum_probs=138.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCc--------
Q 004207          554 STSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT--------  620 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~Dg-----~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dgt--------  620 (768)
                      |...+.+++|||||++||.+..++     .|+|||+.+++.+.....+ ..+.+++|+||++.|+.++.++.        
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~  201 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence            444688999999999998775543     8999999999877543322 23678999999999999988876        


Q ss_pred             --------EEEEECCCCCee-EEEee--cCCCCeEEEEEeCCCCeEEEEEeC----CCcEEEEECCC------Ce-eEEE
Q 004207          621 --------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINN------GS-CAGV  678 (768)
Q Consensus       621 --------IrVWDl~t~~~~-~~~~~--~h~~~V~slafsp~g~~lLaSgs~----Dg~I~iWDl~s------g~-~i~~  678 (768)
                              |++|++.++... ...+.  .|...+.++.|+|+|+.++++...    +..|++||+.+      +. ....
T Consensus       202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  281 (710)
T 2xdw_A          202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (710)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence                    999999876531 22222  345668899999999987766542    56899999986      42 2344


Q ss_pred             Eec-CCCeeEEEEecCCCEEEEEEcCC----eEEEEECCCceEeeecceeEEeecCCCceEEeccCCC--CeeEEEEeCC
Q 004207          679 FKC-QSGATQMRFQPRLGRILAAAIEN----YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK--LVSSLAASTV  751 (768)
Q Consensus       679 ~~~-~~~i~sl~fsp~~~~llags~Dg----~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~--~I~sla~spd  751 (768)
                      +.. ...+. ..|++++..|+..+..+    .|.+||+.+....              ....+..|..  .|..++|+++
T Consensus       282 l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~--------------~~~~l~~~~~~~~~~~~~~~~~  346 (710)
T 2xdw_A          282 LIDNFEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES--------------KWKVLVPEHEKDVLEWVACVRS  346 (710)
T ss_dssp             EECSSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG--------------GCEEEECCCSSCEEEEEEEETT
T ss_pred             eeCCCCcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc--------------cceeccCCCCCCeEEEEEEEcC
Confidence            443 33333 35889999888777543    4777777653210              0112233433  5788999877


Q ss_pred             CCEEEEEECCCcEEEe
Q 004207          752 NGMVASASHDKCVKIW  767 (768)
Q Consensus       752 g~~LaSgs~DG~V~IW  767 (768)
                      +.++++...|+..+||
T Consensus       347 ~~lv~~~~~~g~~~l~  362 (710)
T 2xdw_A          347 NFLVLCYLHDVKNTLQ  362 (710)
T ss_dssp             TEEEEEEEETTEEEEE
T ss_pred             CEEEEEEEECCEEEEE
Confidence            7888888888866554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.37  E-value=4.6e-10  Score=130.25  Aligned_cols=190  Identities=10%  Similarity=0.017  Sum_probs=142.4

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~  585 (768)
                      ..++++...+++|.+++....                   +.+..+.. ...+.++.|+|||+++++++.|+.|.+||+.
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~-------------------~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~  226 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTY-------------------EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLW  226 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTC-------------------CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             ceEEEEeCCCCeEEEEECCCC-------------------eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence            356677778888998854322                   12222322 2347799999999999999999999999995


Q ss_pred             --CCeEEEEeccCCCCEEEEEEc----CCCCEEEEEeC-CCcEEEEECCCCCeeEEEeec----------C-CCCeEEEE
Q 004207          586 --SFTVKSTLEEHTQWITDVRFS----PSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------H-STTVMSLD  647 (768)
Q Consensus       586 --t~~~~~tl~~h~~~V~sl~fs----pdg~~LaTgs~-DgtIrVWDl~t~~~~~~~~~~----------h-~~~V~sla  647 (768)
                        +++.+.++.... ....++|+    |||+++++++. +++|.|+|..+.+. +..+..          | ...+..+.
T Consensus       227 ~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~~~~p~~rva~i~  304 (567)
T 1qks_A          227 MKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAIL  304 (567)
T ss_dssp             SSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEE
T ss_pred             CCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccccccCCCceEEEE
Confidence              888888886544 46899999    69998887766 58999999988775 333321          2 12678899


Q ss_pred             EeCCCCeEEEEEeCCCcEEEEECCCCee--EEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEe
Q 004207          648 FHPSKEDLLCSCDNNSEIRYWSINNGSC--AGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCR  717 (768)
Q Consensus       648 fsp~g~~lLaSgs~Dg~I~iWDl~sg~~--i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~  717 (768)
                      +++++..++++...+|.|.++|..+.+.  +..+........+.|+|++.++++++ .++.|.++|+.+++..
T Consensus       305 ~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~  377 (567)
T 1qks_A          305 ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV  377 (567)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             EcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE
Confidence            9998888888888889999999987543  33344455677899999999988877 5789999999887543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.36  E-value=1.5e-10  Score=121.74  Aligned_cols=194  Identities=12%  Similarity=0.098  Sum_probs=132.0

Q ss_pred             CCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEE-ecc----CCCCEEEEEEcCCCCEEEEEeCC---------
Q 004207          554 STSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKST-LEE----HTQWITDVRFSPSLSRLATSSAD---------  618 (768)
Q Consensus       554 H~~~I~sl~fSpd-g~~LaSgs~Dg~I~VWdl~t~~~~~t-l~~----h~~~V~sl~fspdg~~LaTgs~D---------  618 (768)
                      +...+.+++++++ ++++++. .+..|.+||.+ ++.... ...    ....+.+++++++++++++...+         
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            4466899999999 6655544 44579999988 665433 221    12358899999999888777655         


Q ss_pred             ------CcEEEEECCCCCeeEEEeecCCCCeEEEEEe----CCCCeEEEEEeCCCcEEEEECC-CCee-----EEEEecC
Q 004207          619 ------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFH----PSKEDLLCSCDNNSEIRYWSIN-NGSC-----AGVFKCQ  682 (768)
Q Consensus       619 ------gtIrVWDl~t~~~~~~~~~~h~~~V~slafs----p~g~~lLaSgs~Dg~I~iWDl~-sg~~-----i~~~~~~  682 (768)
                            +.|..||.+ ++.  ..+..+......++|+    ++++.++++...++.|.+||+. ++..     ...+...
T Consensus       147 ~~~~~~~~l~~~~~~-g~~--~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~  223 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQM--IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT  223 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCE--EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred             cccCCCCeEEEECCC-CCE--EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC
Confidence                  567777765 432  2233334557889999    9987777777778899999986 4542     1222222


Q ss_pred             --CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE-
Q 004207          683 --SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-  759 (768)
Q Consensus       683 --~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs-  759 (768)
                        ..+..+++++++..+++...++.|.+||..++....                .+..+...+.+++|++++++|++++ 
T Consensus       224 ~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~----------------~~~~~~~~~~~i~~~~dg~~l~v~~~  287 (314)
T 1pjx_A          224 HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKM----------------RIRCPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSE----------------EEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeE----------------EEeCCCCCceeEEECCCCCEEEEEeC
Confidence              457789999998777777778899999987543321                1123446789999999999555554 


Q ss_pred             CCCcEEEeC
Q 004207          760 HDKCVKIWK  768 (768)
Q Consensus       760 ~DG~V~IWD  768 (768)
                      .++.|.+|+
T Consensus       288 ~~~~l~~~~  296 (314)
T 1pjx_A          288 ENNAVWKFE  296 (314)
T ss_dssp             TTTEEEEEE
T ss_pred             CCCeEEEEe
Confidence            567777764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.36  E-value=1.5e-10  Score=126.45  Aligned_cols=219  Identities=11%  Similarity=0.039  Sum_probs=141.2

Q ss_pred             CccccCCCCEEEeec----------CCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecC---CCCCeEEEEEcC
Q 004207          499 PNQLTDMDRFVDDGS----------LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA---STSKVESCHFSP  565 (768)
Q Consensus       499 ~~~l~~~~~~latGS----------~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~---H~~~I~sl~fSp  565 (768)
                      ...+++.++++++++          .++.|.+|+...                ......+.....   +......++|+|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t----------------~~~~~~i~~~~~~~~~g~~p~~i~~sp  117 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK----------------LTFEKEISLPPKRVQGLNYDGLFRQTT  117 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT----------------CCEEEEEEECTTBCCBCCCGGGEEECT
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC----------------CcEEEEEEcCccccccCCCcceEEECC
Confidence            456677777777765          256677774321                111222222111   224567899999


Q ss_pred             CCCEEEEEeC--CCcEEEEECCCCeEEEE-eccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCC-CCee--------
Q 004207          566 DGKLLATGGH--DKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTEN-PDYS--------  632 (768)
Q Consensus       566 dg~~LaSgs~--Dg~I~VWdl~t~~~~~t-l~~h~~~V~sl~fspdg-~~LaTgs~DgtIrVWDl~t-~~~~--------  632 (768)
                      ||++|+++..  ++.|.|||+.+++.+.+ +... . ...+.+.|++ ..+++.+.||.+.+|+++. ++..        
T Consensus       118 dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~  195 (361)
T 2oiz_A          118 DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQM  195 (361)
T ss_dssp             TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCC
T ss_pred             CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccce
Confidence            9999998864  57999999999998887 5432 1 2223444543 3445555555555555432 1110        


Q ss_pred             ---------------------------------------E-EEeec------C----CCCeEEEEEeCCCCeEEEEEe--
Q 004207          633 ---------------------------------------L-RTFTG------H----STTVMSLDFHPSKEDLLCSCD--  660 (768)
Q Consensus       633 ---------------------------------------~-~~~~~------h----~~~V~slafsp~g~~lLaSgs--  660 (768)
                                                             + ..+.-      +    ......++|+|+++.+++++.  
T Consensus       196 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~  275 (361)
T 2oiz_A          196 FSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPD  275 (361)
T ss_dssp             SCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESS
T ss_pred             EcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccC
Confidence                                                   0 00000      0    000112688999888887665  


Q ss_pred             --------CCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCc--eEeeecceeEEeecCC
Q 004207          661 --------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQTLELWNMTE  730 (768)
Q Consensus       661 --------~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~--~~~~~~~~I~iwd~~~  730 (768)
                              ..+.|.+||+.+++.+..+..+. +..++|+|++.+++++.. +.|.+||..++  +.+..           
T Consensus       276 ~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~-----------  342 (361)
T 2oiz_A          276 GKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRT-----------  342 (361)
T ss_dssp             CCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEE-----------
T ss_pred             CCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEE-----------
Confidence                    13489999999999999999877 999999999998887776 99999998887  55432           


Q ss_pred             CceEEeccCCCCeeEEEEeCCCC
Q 004207          731 NKTLTLSAHDKLVSSLAASTVNG  753 (768)
Q Consensus       731 ~~~~~l~~H~~~I~sla~spdg~  753 (768)
                           +..+......++++|+|+
T Consensus       343 -----i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          343 -----IEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             -----ETTSCSSEEEEEECCCSC
T ss_pred             -----eccCCCCcEEEEecCCCC
Confidence                 234556678899999885

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.36  E-value=1.1e-10  Score=125.70  Aligned_cols=222  Identities=11%  Similarity=0.017  Sum_probs=151.6

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~  585 (768)
                      +.+.++...++.|.+|+....                   +.+..+. .......++++++++++++...++.|.+||..
T Consensus        54 ~~lyv~~~~~~~v~viD~~t~-------------------~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~  113 (328)
T 3dsm_A           54 GIGWIVVNNSHVIFAIDINTF-------------------KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPK  113 (328)
T ss_dssp             TEEEEEEGGGTEEEEEETTTC-------------------CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETT
T ss_pred             CEEEEEEcCCCEEEEEECccc-------------------EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECC
Confidence            344455555677888744322                   1222232 23568899999998555555489999999999


Q ss_pred             CCeEEEEeccCC-----CCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207          586 SFTVKSTLEEHT-----QWITDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (768)
Q Consensus       586 t~~~~~tl~~h~-----~~V~sl~fspdg~~LaTgs--~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS  658 (768)
                      +++....+....     .....+++  ++..|+++.  .+++|.+||+.+++. +..+.. ......++++++|+ ++++
T Consensus       114 t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~-~~~i~~-g~~p~~i~~~~dG~-l~v~  188 (328)
T 3dsm_A          114 TYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV-VDELTI-GIQPTSLVMDKYNK-MWTI  188 (328)
T ss_dssp             TTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE-EEEEEC-SSCBCCCEECTTSE-EEEE
T ss_pred             CCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE-EEEEEc-CCCccceEEcCCCC-EEEE
Confidence            999887775433     14567777  345555555  488999999998765 444443 33467899999976 5555


Q ss_pred             EeCC----------CcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEe
Q 004207          659 CDNN----------SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW  726 (768)
Q Consensus       659 gs~D----------g~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iw  726 (768)
                      +..+          +.|.+||..+++.+..+..  ......++|+|+++.++++..  .|.+||..+++.... .     
T Consensus       189 ~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~-~-----  260 (328)
T 3dsm_A          189 TDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR-P-----  260 (328)
T ss_dssp             BCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS-C-----
T ss_pred             ECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee-e-----
Confidence            5544          7899999999998877765  346889999999998887654  888899877643210 0     


Q ss_pred             ecCCCceEEeccCCCCeeEEEEeCC-CCEEEEE----ECCCcEEEeC
Q 004207          727 NMTENKTLTLSAHDKLVSSLAASTV-NGMVASA----SHDKCVKIWK  768 (768)
Q Consensus       727 d~~~~~~~~l~~H~~~I~sla~spd-g~~LaSg----s~DG~V~IWD  768 (768)
                              .+..+...+..++++|+ +.++++.    ..++.|.+||
T Consensus       261 --------~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d  299 (328)
T 3dsm_A          261 --------FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS  299 (328)
T ss_dssp             --------SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred             --------eecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence                    01112356889999995 4555555    5688999986

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.34  E-value=1.6e-09  Score=112.53  Aligned_cols=195  Identities=11%  Similarity=0.037  Sum_probs=138.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE-EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee
Q 004207          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~-~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~  632 (768)
                      +...+.+++++++|.++++...++.|.+||.. ++.. ..+......+.++++++++.++++...++.|.+||. ++...
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~  132 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR  132 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence            45679999999999988887778899999986 3332 222234557899999999988888777889999998 55543


Q ss_pred             EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEE-Ee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 004207          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYISILD  710 (768)
Q Consensus       633 ~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~-~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD  710 (768)
                      ......+...+.++++++++. ++++...++.|.+||. +++.... +. ....+..+++++++..+++...++.|.+||
T Consensus       133 ~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~  210 (299)
T 2z2n_A          133 EYELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRIT  210 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             EecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEEC
Confidence            333333456789999999975 6656666789999999 6665442 11 234578899999877555544578899998


Q ss_pred             CCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          711 VETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       711 ~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      . ++...       .+        ....+...+.++++++++.++++...++.|.+||
T Consensus       211 ~-~g~~~-------~~--------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d  252 (299)
T 2z2n_A          211 T-SGEIT-------EF--------KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLT  252 (299)
T ss_dssp             T-TCCEE-------EE--------ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEE
T ss_pred             C-CCcEE-------EE--------ECCCCCCCceeEEECCCCCEEEeccCCceEEEEC
Confidence            8 44321       11        1123456688999999988666665677787774

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.32  E-value=5.3e-11  Score=131.38  Aligned_cols=178  Identities=13%  Similarity=0.100  Sum_probs=134.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~-----------~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      .+..+++++...+|++|+.++ ++||+++..+           ..... .+.. |+.|+|  ++.+|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            589999999999999999985 6669865433           11222 3556 999999  88999998 889999999


Q ss_pred             CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCe
Q 004207          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY  705 (768)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~  705 (768)
                      +.+... ......|...|.++.+.+.  . +++++.||.|.+||+.++....   ....|++++|+|+|  ++++..||.
T Consensus       113 v~sl~~-~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~  183 (388)
T 1xip_A          113 LEELSE-FRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRS  183 (388)
T ss_dssp             SSSTTC-EEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSC
T ss_pred             chhhhc-cCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCc
Confidence            987664 4556667788988887754  2 6678889999999999887654   33689999999998  788999999


Q ss_pred             EEEEECCCceE--eeecceeEEeecCCCceEEec---cCCCCeeEEEEeCCCCEEEEEE
Q 004207          706 ISILDVETQVC--RLKLQTLELWNMTENKTLTLS---AHDKLVSSLAASTVNGMVASAS  759 (768)
Q Consensus       706 I~IwD~~t~~~--~~~~~~I~iwd~~~~~~~~l~---~H~~~I~sla~spdg~~LaSgs  759 (768)
                      |++|+.....+  ...+.        ...  .+.   +|...|.+|.|.+++.+|++=+
T Consensus       184 i~~~~~~~~~~~~k~~I~--------~Pp--~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          184 FQSFAWRNGEMEKQFEFS--------LPS--ELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEEEEEETTEEEEEEEEC--------CCH--HHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEEEcCCCccccccceec--------CCc--ccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            99998877654  21110        000  011   4678899999999888887643

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.31  E-value=3.2e-11  Score=143.10  Aligned_cols=196  Identities=10%  Similarity=0.013  Sum_probs=134.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEE-----EeCCCcEEEEECCCCeEEEEeccCCCCE--EEEEEcCCCCEEEEEeCCCc-----
Q 004207          553 ASTSKVESCHFSPDGKLLAT-----GGHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRT-----  620 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaS-----gs~Dg~I~VWdl~t~~~~~tl~~h~~~V--~sl~fspdg~~LaTgs~Dgt-----  620 (768)
                      +|...+.+++|||||++||.     |+.+..|++||+.+++.+.  ..+...+  ..++|+||++.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            45556899999999999883     3445689999999988641  1121222  68999999999999998876     


Q ss_pred             --------EEEEECCCCCe---eEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-C--cEEEEECCCCeeEEEEecCCCee
Q 004207          621 --------VRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGAT  686 (768)
Q Consensus       621 --------IrVWDl~t~~~---~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-g--~I~iWDl~sg~~i~~~~~~~~i~  686 (768)
                              |++|++.++..   .+.....|...+.++.|+|+|+.++++...+ +  .|++||..++...........+.
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  275 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY  275 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence                    99999987652   2233334556789999999999877666543 2  67777776665555555555566


Q ss_pred             EEEEecCCCEEEEEEc----CCeEEEEECCCceEeeecceeEEeecCCCceEEeccC--CCCeeEEEEeCCCCEEEEEEC
Q 004207          687 QMRFQPRLGRILAAAI----ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAH--DKLVSSLAASTVNGMVASASH  760 (768)
Q Consensus       687 sl~fsp~~~~llags~----Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H--~~~I~sla~spdg~~LaSgs~  760 (768)
                      ...+ +++. +++.+.    ++.|.+||+.+....              ....+..|  ...|..++|+ ++.++++...
T Consensus       276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~--------------~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~  338 (695)
T 2bkl_A          276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA--------------SWKEIVPEDSSASLLSVSIV-GGHLSLEYLK  338 (695)
T ss_dssp             EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG--------------GCEEEECCCSSCEEEEEEEE-TTEEEEEEEE
T ss_pred             EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc--------------CCeEEecCCCCCeEEEEEEE-CCEEEEEEEE
Confidence            6666 5566 555554    466777777553210              00122222  4457888888 6678888899


Q ss_pred             CCcEEEe
Q 004207          761 DKCVKIW  767 (768)
Q Consensus       761 DG~V~IW  767 (768)
                      |+..+||
T Consensus       339 dg~~~l~  345 (695)
T 2bkl_A          339 DATSEVR  345 (695)
T ss_dssp             TTEEEEE
T ss_pred             CCEEEEE
Confidence            9998887

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.31  E-value=1.3e-10  Score=124.17  Aligned_cols=178  Identities=10%  Similarity=0.100  Sum_probs=121.3

Q ss_pred             eEEEEEcCCCCEEEEEeCC---------------------------CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC
Q 004207          558 VESCHFSPDGKLLATGGHD---------------------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS  610 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~D---------------------------g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~  610 (768)
                      +.+++|+|||+.|+.++.+                           ..|++||+.+++.+..+.. . .+..++|+|++ 
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-  182 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-  182 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-
Confidence            9999999999988887642                           5699999998887445544 3 78899999999 


Q ss_pred             EEEEEeCCC-------cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-------CcEEEEECCCCeeE
Q 004207          611 RLATSSADR-------TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCA  676 (768)
Q Consensus       611 ~LaTgs~Dg-------tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-------g~I~iWDl~sg~~i  676 (768)
                      +++++..++       ...||.+++++  ...+..+ ..+.++  +|+|+.+++++..+       ..|.+||  +++..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~l~~~d~~~--~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~  255 (347)
T 2gop_A          183 IVVNVPHREIIPQYFKFWDIYIWEDGK--EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM  255 (347)
T ss_dssp             EEEEEECCCSSCCSSCCEEEEEEETTE--EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE
T ss_pred             EEEEEecccccccccccccEEEeCCCc--eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE
Confidence            888876652       44555554333  3334434 455544  99998777665432       4688888  55544


Q ss_pred             EEEec-CCCeeE-EEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCE
Q 004207          677 GVFKC-QSGATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGM  754 (768)
Q Consensus       677 ~~~~~-~~~i~s-l~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~  754 (768)
                      ..+.. ...+.. +.|+ ++ .+++++.++.+.|| +.++.                 ...+..+...|.+++|++  .+
T Consensus       256 ~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~-----------------~~~~~~~~~~v~~~~~s~--~~  313 (347)
T 2gop_A          256 GILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE-----------------IKPIAKGRHWIMGFDVDE--IV  313 (347)
T ss_dssp             ESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS-----------------EEEEECSSSEEEEEEESS--SE
T ss_pred             eccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc-----------------eEEEecCCCeEEeeeeeC--cE
Confidence            33333 344665 8898 77 77888889988888 65322                 122234567789999999  67


Q ss_pred             EEEEECCCcE-EEe
Q 004207          755 VASASHDKCV-KIW  767 (768)
Q Consensus       755 LaSgs~DG~V-~IW  767 (768)
                      +++++.++.. .||
T Consensus       314 ~~~~~~~~~~~~l~  327 (347)
T 2gop_A          314 VYLKETATRLRELF  327 (347)
T ss_dssp             EEEEECSSSCCEEE
T ss_pred             EEEEcCCCChHHhe
Confidence            7787777654 555

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.29  E-value=3.2e-09  Score=123.18  Aligned_cols=252  Identities=10%  Similarity=0.063  Sum_probs=171.2

Q ss_pred             CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEc----CCCCEEEEEe
Q 004207          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS----PDGKLLATGG  574 (768)
Q Consensus       499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fS----pdg~~LaSgs  574 (768)
                      ...+++.++++.+++.|+.|.+|+....                 +.+.+..+.... ....++|+    |||+++++++
T Consensus       201 ~v~~SpDGr~lyv~~~dg~V~viD~~~~-----------------t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n  262 (567)
T 1qks_A          201 ISRLSASGRYLFVIGRDGKVNMIDLWMK-----------------EPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGA  262 (567)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSS-----------------SCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEE
T ss_pred             ceEECCCCCEEEEEcCCCeEEEEECCCC-----------------CCcEeEEEecCC-CCceeEEccccCCCCCEEEEEE
Confidence            4566778889988899999999964211                 011223333322 25689999    6999887765


Q ss_pred             C-CCcEEEEECCCCeEEEEeccC-----------CCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCCeeEEEeecCCC
Q 004207          575 H-DKKAVLWCTESFTVKSTLEEH-----------TQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHST  641 (768)
Q Consensus       575 ~-Dg~I~VWdl~t~~~~~tl~~h-----------~~~V~sl~fspdg~~-LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~  641 (768)
                      . ++.|.|+|..+.+++.++...           ...+..+.+++++.. +++...+|.|.++|..+.+...........
T Consensus       263 ~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~  342 (567)
T 1qks_A          263 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER  342 (567)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCS
T ss_pred             ccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccc
Confidence            4 589999999999988776421           126788999987554 455566799999999876532322233445


Q ss_pred             CeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCe---eEEE-EecCCCEEEEEE--cCCeEEEEECCC-
Q 004207          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGA---TQMR-FQPRLGRILAAA--IENYISILDVET-  713 (768)
Q Consensus       642 ~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i---~sl~-fsp~~~~llags--~Dg~I~IwD~~t-  713 (768)
                      ...++.|+|+++++++++..++.|.++|+.+++.+..+.. ....   .... ++|+++.+++.+  .++.|.++|..+ 
T Consensus       343 ~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~  422 (567)
T 1qks_A          343 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE  422 (567)
T ss_dssp             SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             cccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence            6788999999999998888889999999999998887765 2211   1223 588867766655  468999999876 


Q ss_pred             ------ceEeeecc--------------------------------eeEEeecCCC-----c-e-EEec--------cCC
Q 004207          714 ------QVCRLKLQ--------------------------------TLELWNMTEN-----K-T-LTLS--------AHD  740 (768)
Q Consensus       714 ------~~~~~~~~--------------------------------~I~iwd~~~~-----~-~-~~l~--------~H~  740 (768)
                            .+.+..+.                                .|.++|+.+.     . . ..+.        ...
T Consensus       423 ~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~  502 (567)
T 1qks_A          423 GHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQ  502 (567)
T ss_dssp             TCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSC
T ss_pred             CCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCC
Confidence                  22222211                                4566666544     1 1 1111        113


Q ss_pred             CCeeEEEEeCCCCEEEEEE-----CCCcEEEeC
Q 004207          741 KLVSSLAASTVNGMVASAS-----HDKCVKIWK  768 (768)
Q Consensus       741 ~~I~sla~spdg~~LaSgs-----~DG~V~IWD  768 (768)
                      ..+..+.|+++|++|+.+.     .++.|.|+|
T Consensus       503 ~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D  535 (567)
T 1qks_A          503 PRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  535 (567)
T ss_dssp             CEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             cceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence            4678999999999877763     368888875

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.29  E-value=6.4e-11  Score=140.52  Aligned_cols=229  Identities=7%  Similarity=-0.089  Sum_probs=145.5

Q ss_pred             cccCCCCEEE-----eecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 004207          501 QLTDMDRFVD-----DGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH  575 (768)
Q Consensus       501 ~l~~~~~~la-----tGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~  575 (768)
                      .+.+.+++|+     .|+.+..|++|+...+...     .     ..       .+...  ...+++|+|||+.|+.++.
T Consensus       127 ~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~-----~-----~~-------~~~~~--~~~~~~wspDg~~l~~~~~  187 (695)
T 2bkl_A          127 AVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS-----K-----VD-------VIEGG--KYATPKWTPDSKGFYYEWL  187 (695)
T ss_dssp             EECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC-----S-----SC-------CBSCC--TTCCCEECTTSSEEEEEEC
T ss_pred             EECCCCCEEEEEECCCCCceEEEEEEECCCCCCc-----C-----Cc-------ccCcc--cccceEEecCCCEEEEEEe
Confidence            3445566666     5666678999976543210     0     00       01111  1257899999999999988


Q ss_pred             CCc-------------EEEEECCCCe----EEEEeccCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCCeeEE
Q 004207          576 DKK-------------AVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADR----TVRVWDTENPDYSLR  634 (768)
Q Consensus       576 Dg~-------------I~VWdl~t~~----~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg----tIrVWDl~t~~~~~~  634 (768)
                      |..             |++|++.++.    ++.....|...+.++.|+|||++|+.++.++    .|++||..++.  ..
T Consensus       188 d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~--~~  265 (695)
T 2bkl_A          188 PTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD--FR  265 (695)
T ss_dssp             CCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS--CE
T ss_pred             cCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc--eE
Confidence            776             9999998765    3333344556789999999999998887766    67777665443  44


Q ss_pred             EeecCCCCeEEEEEeCCCCeEEEEEe---CCCcEEEEECCCCee---EEEEec--CCCeeEEEEecCCCEEEEEEcCCeE
Q 004207          635 TFTGHSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSC---AGVFKC--QSGATQMRFQPRLGRILAAAIENYI  706 (768)
Q Consensus       635 ~~~~h~~~V~slafsp~g~~lLaSgs---~Dg~I~iWDl~sg~~---i~~~~~--~~~i~sl~fsp~~~~llags~Dg~I  706 (768)
                      .+..+...+....| +++. +++++.   .++.|.+||+.++..   ...+..  ...+..++|+ ++..+++...|+..
T Consensus       266 ~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~  342 (695)
T 2bkl_A          266 LLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATS  342 (695)
T ss_dssp             EEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEE
T ss_pred             EeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence            45556666677767 5666 666655   358899999987653   333333  2346778888 45566677778877


Q ss_pred             EEEECCCceEeeecceeEEeecCCCceEEeccC-CCCeeEEEEeCCCCEEEEEE----CCCcEEEeC
Q 004207          707 SILDVETQVCRLKLQTLELWNMTENKTLTLSAH-DKLVSSLAASTVNGMVASAS----HDKCVKIWK  768 (768)
Q Consensus       707 ~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H-~~~I~sla~spdg~~LaSgs----~DG~V~IWD  768 (768)
                      +||.+..               ..+....+..+ .+.|..++++|++..|+...    ..+.|++||
T Consensus       343 ~l~~~~~---------------~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d  394 (695)
T 2bkl_A          343 EVRVATL---------------KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTS  394 (695)
T ss_dssp             EEEEEET---------------TCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEeC---------------CCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence            7665431               11111122222 45677788888887665332    346777775

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.29  E-value=1.6e-10  Score=121.72  Aligned_cols=180  Identities=10%  Similarity=0.040  Sum_probs=136.1

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecC-CCCe
Q 004207          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTV  643 (768)
Q Consensus       566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~-~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h-~~~V  643 (768)
                      .+++|++++.|+.|.+||.++++.+.++..+. ..+.++.++|+|++|+  +.++.|..||. +++. +..+..+ ...+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~-~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRE-LWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE-EEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE-EEEEcCCCCccc
Confidence            46789999999999999999999999998765 4689999999999888  45788999999 6664 5556554 3578


Q ss_pred             EEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC-------CeeEEEEecCCCEEEEEEcCCeEEEEECCCceE
Q 004207          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-------GATQMRFQPRLGRILAAAIENYISILDVETQVC  716 (768)
Q Consensus       644 ~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~-------~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~  716 (768)
                      .++.+.++|+.+++.++.++.|..+|. +++.+..+....       ....+++.++++++++...++.|.+||.. ++.
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence            899999998865544433677888885 688877776322       24456788999999888889999999987 554


Q ss_pred             eeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          717 RLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       717 ~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ..        .+..         ...+.++.+.+++++|++++.++.|..||
T Consensus       158 ~w--------~~~~---------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d  192 (276)
T 3no2_A          158 LN--------SVKL---------SGTPFSSAFLDNGDCLVACGDAHCFVQLN  192 (276)
T ss_dssp             EE--------EEEC---------SSCCCEEEECTTSCEEEECBTTSEEEEEC
T ss_pred             EE--------EEEC---------CCCccceeEcCCCCEEEEeCCCCeEEEEe
Confidence            32        2211         12355677778888888887777777765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.27  E-value=2.5e-10  Score=117.39  Aligned_cols=192  Identities=7%  Similarity=-0.037  Sum_probs=132.0

Q ss_pred             CeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 004207          557 KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (768)
Q Consensus       557 ~I~sl~fSpdg~~La-Sgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~  635 (768)
                      ...+++++++|++++ +...++.|.+||..+.........+...+.+|+++++++++++.. ++.|.+||......  ..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~--~~  101 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ--TV  101 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC--EE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE--ee
Confidence            578999999999777 546788999999766543322233335688999999988666655 88999999876543  22


Q ss_pred             ee-cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207          636 FT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       636 ~~-~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                      +. .....+.++++++++. ++++...++.|.+||..+........ ....+..+++++++..+++...++.|.+||..+
T Consensus       102 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~  180 (270)
T 1rwi_B          102 LPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  180 (270)
T ss_dssp             CCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             eecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence            22 2335789999999876 66676678899999876544332221 123578899999887555555678899999876


Q ss_pred             ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          714 QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       714 ~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ......                ...+...+.+|++++++.++++...++.|.+||
T Consensus       181 ~~~~~~----------------~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~  219 (270)
T 1rwi_B          181 NNQVVL----------------PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL  219 (270)
T ss_dssp             CCEEEC----------------CCSSCCSEEEEEECTTCCEEEEETTTSCEEEEC
T ss_pred             CceEee----------------cccCCCCceEEEECCCCCEEEEECCCCcEEEEc
Confidence            432210                112235688999999997777777788898886

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.26  E-value=2.8e-09  Score=117.22  Aligned_cols=202  Identities=12%  Similarity=0.055  Sum_probs=130.3

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccC-------CCCEEEEEEcCCCCEEEEEeC--CCc
Q 004207          560 SCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLSRLATSSA--DRT  620 (768)
Q Consensus       560 sl~fSpdg~~LaSgs----------~Dg~I~VWdl~t~~~~~tl~~h-------~~~V~sl~fspdg~~LaTgs~--Dgt  620 (768)
                      .++|+|||++|+++.          .++.|.+||..+.+.+.++...       ......++|+|||++|+++..  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            899999999988886          3678999999998888776432       123468999999999999874  478


Q ss_pred             EEEEECCCCCeeEEE-eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-----c-CCC-eeEEEEec
Q 004207          621 VRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----C-QSG-ATQMRFQP  692 (768)
Q Consensus       621 IrVWDl~t~~~~~~~-~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-----~-~~~-i~sl~fsp  692 (768)
                      |.++| .+++. +.. +. ...   |+.+.|++...+++.+.||.+.+||. +++.+....     . ... .....+.+
T Consensus       150 v~viD-~t~~~-~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~  222 (373)
T 2mad_H          150 VGLVV-QGGSS-DDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN  222 (373)
T ss_pred             EEEEE-CCCCE-EeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe
Confidence            99999 88765 444 32 112   35566776666667777888888888 766553221     0 111 11233444


Q ss_pred             CCCEEEEEEcCCeEEEEECCCceE-------------------------ee----------------------ecceeEE
Q 004207          693 RLGRILAAAIENYISILDVETQVC-------------------------RL----------------------KLQTLEL  725 (768)
Q Consensus       693 ~~~~llags~Dg~I~IwD~~t~~~-------------------------~~----------------------~~~~I~i  725 (768)
                      +++.++..+.++.|.++|+.+...                         ..                      .-..|.+
T Consensus       223 ~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V  302 (373)
T 2mad_H          223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS  302 (373)
T ss_pred             cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence            444444444455555555432100                         00                      0013555


Q ss_pred             eecCCCceEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 004207          726 WNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK  768 (768)
Q Consensus       726 wd~~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs-~DG~V~IWD  768 (768)
                      +|..+.+.+..........+++|+||++ +++++. .++.|.|||
T Consensus       303 ID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD  347 (373)
T 2mad_H          303 VTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             EECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence            6666666543333344689999999999 787777 589999986

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.26  E-value=8.3e-09  Score=106.98  Aligned_cols=191  Identities=10%  Similarity=0.056  Sum_probs=133.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE-eccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee
Q 004207          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~t-l~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~  632 (768)
                      +...+.++++.+++.++++...++.|.+||. +++.... +..+...+.+++++++++++++...++.|.+||. +++..
T Consensus        97 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~  174 (299)
T 2z2n_A           97 PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT  174 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE
Confidence            4557899999999998888777889999998 5554432 3334567899999999988877777889999999 55542


Q ss_pred             EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 004207          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISIL  709 (768)
Q Consensus       633 ~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~llags~Dg~I~Iw  709 (768)
                      ......+...+.++++++++. ++++...++.|.+||. ++.... +..   ...+..+++++++..+++...++.|.+|
T Consensus       175 ~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~  251 (299)
T 2z2n_A          175 EFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRL  251 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred             EeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEE
Confidence            222333456788999999876 6656656789999999 666433 322   3568899999997744444467899999


Q ss_pred             ECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207          710 DVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  766 (768)
Q Consensus       710 D~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~I  766 (768)
                      |.. +.       +..+.        +..+...+.++++ +++.++++.+.++.+++
T Consensus       252 d~~-g~-------~~~~~--------~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~  291 (299)
T 2z2n_A          252 TSN-NI-------IEEYP--------IQIKSAEPHGICF-DGETIWFAMECDKIGKL  291 (299)
T ss_dssp             ETT-TE-------EEEEE--------CSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred             CCC-Cc-------eEEEe--------CCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence            983 22       11121        1233456899999 88887766554444443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.24  E-value=1.3e-08  Score=105.66  Aligned_cols=195  Identities=8%  Similarity=-0.013  Sum_probs=136.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q 004207          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~-tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~  631 (768)
                      .+...+.++++.+++.++++...++.|.+||.. ++... .+......+.++++.++++++++...++.|..||.+ ++.
T Consensus        59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~  136 (300)
T 2qc5_A           59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI  136 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence            344678999999999988877778899999987 55432 223234678999999999888887778899999987 554


Q ss_pred             eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISI  708 (768)
Q Consensus       632 ~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~llags~Dg~I~I  708 (768)
                      ....+......+.++++++++. ++++...++.|..||. +++... +..   ...+..+++++++..+++....+.|.+
T Consensus       137 ~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  213 (300)
T 2qc5_A          137 YEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR  213 (300)
T ss_dssp             EEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             EEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEE
Confidence            3223333456789999999987 6656666788999998 555543 322   345788999998765554445678999


Q ss_pred             EECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          709 LDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       709 wD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ||.. +...       .+        .+..+...+.++++++++.++++...++.|.+||
T Consensus       214 ~~~~-g~~~-------~~--------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  257 (300)
T 2qc5_A          214 ITTT-GEIS-------EY--------DIPTPNARPHAITAGKNSEIWFTEWGANQIGRIT  257 (300)
T ss_dssp             ECTT-CCEE-------EE--------ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred             EcCC-CcEE-------EE--------ECCCCCCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence            9873 2211       11        1113445688999999988666665667887775

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.24  E-value=6.2e-10  Score=119.70  Aligned_cols=190  Identities=7%  Similarity=-0.034  Sum_probs=136.3

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEe
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~  636 (768)
                      ...++.+. +++++++...++.|.+||..+++.+.++.. ......++++++++.+++...++.|.+||+.+++. ...+
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~-~~~i  121 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI-TGYI  121 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE-EEEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE-EEEE
Confidence            35667774 455566666689999999999999888853 46689999998885444444899999999998764 3333


Q ss_pred             ecCC-----CCeEEEEEeCCCCeEEEEEe-CCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcC-------
Q 004207          637 TGHS-----TTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-------  703 (768)
Q Consensus       637 ~~h~-----~~V~slafsp~g~~lLaSgs-~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~D-------  703 (768)
                      ....     .....+++  ++..++++.. .++.|.+||+.+++.+..+........+++++++..++++..+       
T Consensus       122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~  199 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYG  199 (328)
T ss_dssp             ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred             EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccc
Confidence            3222     14567777  3456776654 4889999999999999888876777889999987755555443       


Q ss_pred             ---CeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          704 ---NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       704 ---g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                         +.|.+||..+.+....+      .+         .....+..++|+|++++|+++..  .|.+||
T Consensus       200 ~~~~~v~~id~~t~~v~~~~------~~---------~~g~~p~~la~~~d~~~lyv~~~--~v~~~d  250 (328)
T 3dsm_A          200 YEAPSLYRIDAETFTVEKQF------KF---------KLGDWPSEVQLNGTRDTLYWINN--DIWRMP  250 (328)
T ss_dssp             BCCCEEEEEETTTTEEEEEE------EC---------CTTCCCEEEEECTTSCEEEEESS--SEEEEE
T ss_pred             cCCceEEEEECCCCeEEEEE------ec---------CCCCCceeEEEecCCCEEEEEcc--EEEEEE
Confidence               68889988876543211      11         11235789999999998888754  777775

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.24  E-value=2.1e-09  Score=115.37  Aligned_cols=163  Identities=12%  Similarity=0.105  Sum_probs=122.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEe---------ccCCCCEEEEEEcC-CCCEEEEEe-CCCc
Q 004207          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTL---------EEHTQWITDVRFSP-SLSRLATSS-ADRT  620 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~-~~~tl---------~~h~~~V~sl~fsp-dg~~LaTgs-~Dgt  620 (768)
                      ++-.....|+++++|+++++...++.|++||.+... .+..+         ..+......|+|+| ++.++++.+ .++.
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~  167 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR  167 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence            445678999999999988888889999999986542 45555         24445789999999 788888876 6899


Q ss_pred             EEEEECCCCCeeEEEeec----------CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeeE
Q 004207          621 VRVWDTENPDYSLRTFTG----------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQ  687 (768)
Q Consensus       621 IrVWDl~t~~~~~~~~~~----------h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~s  687 (768)
                      |++||.+ +.. +..+..          +-....+|+++|++..++++...++.|++||..+++.+..+..   ...+..
T Consensus       168 I~~~~~~-g~~-~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~  245 (329)
T 3fvz_A          168 IVQFSPS-GKF-VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA  245 (329)
T ss_dssp             EEEECTT-SCE-EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEE
T ss_pred             EEEEcCC-CCE-EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcce
Confidence            9999954 443 444432          2234899999999777888888899999999998998888753   346788


Q ss_pred             EEEecCCCEEEEEE--------cCCeEEEEECCCceEeee
Q 004207          688 MRFQPRLGRILAAA--------IENYISILDVETQVCRLK  719 (768)
Q Consensus       688 l~fsp~~~~llags--------~Dg~I~IwD~~t~~~~~~  719 (768)
                      ++|+|  +.++...        .+..|++||..++.....
T Consensus       246 ~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~  283 (329)
T 3fvz_A          246 ISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV  283 (329)
T ss_dssp             EEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE
T ss_pred             eeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE
Confidence            99999  3333332        244799999988776544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.23  E-value=5.9e-09  Score=110.07  Aligned_cols=215  Identities=10%  Similarity=-0.005  Sum_probs=141.0

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~  585 (768)
                      ..++.+...++.|..|......                 ..   .+ .+...+.+++++++|+++++.  +..|.+||.+
T Consensus        25 ~~l~~~d~~~~~i~~~d~~~~~-----------------~~---~~-~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~   81 (297)
T 3g4e_A           25 NSLLFVDIPAKKVCRWDSFTKQ-----------------VQ---RV-TMDAPVSSVALRQSGGYVATI--GTKFCALNWK   81 (297)
T ss_dssp             TEEEEEETTTTEEEEEETTTCC-----------------EE---EE-ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETT
T ss_pred             CEEEEEECCCCEEEEEECCCCc-----------------EE---EE-eCCCceEEEEECCCCCEEEEE--CCeEEEEECC
Confidence            4566666677788888543221                 01   11 123569999999999965543  5689999998


Q ss_pred             CCeEEEEecc----CCCCEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC
Q 004207          586 SFTVKSTLEE----HTQWITDVRFSPSLSRLATSSAD---------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK  652 (768)
Q Consensus       586 t~~~~~tl~~----h~~~V~sl~fspdg~~LaTgs~D---------gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g  652 (768)
                      +++.......    ....+.+++++|+|+++++...+         ....||.++.... +..+..+......++|+|++
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg  160 (297)
T 3g4e_A           82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLDH  160 (297)
T ss_dssp             TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTTS
T ss_pred             CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCCC
Confidence            8775433321    12358899999999977765322         2345555543222 22233344567899999999


Q ss_pred             CeEEEEEeCCCcEEEEEC--CCCeeE--EEEe----cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeE
Q 004207          653 EDLLCSCDNNSEIRYWSI--NNGSCA--GVFK----CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLE  724 (768)
Q Consensus       653 ~~lLaSgs~Dg~I~iWDl--~sg~~i--~~~~----~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~  724 (768)
                      +.++++.+.++.|.+||+  .++...  ..+.    ....+..+++++++..+++....+.|.+||..+++....     
T Consensus       161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~-----  235 (297)
T 3g4e_A          161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQT-----  235 (297)
T ss_dssp             CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEE-----
T ss_pred             CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEE-----
Confidence            888888888899999997  455432  2221    124577899999987666666778899999876654322     


Q ss_pred             EeecCCCceEEeccCCCCeeEEEEe-CCCCEEEEEEC
Q 004207          725 LWNMTENKTLTLSAHDKLVSSLAAS-TVNGMVASASH  760 (768)
Q Consensus       725 iwd~~~~~~~~l~~H~~~I~sla~s-pdg~~LaSgs~  760 (768)
                                 +..+...+++++|. |+++.|++++.
T Consensus       236 -----------i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          236 -----------VKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             -----------EECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             -----------EECCCCCceEEEEeCCCCCEEEEEcC
Confidence                       22344568999998 88876665553

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.19  E-value=5.6e-10  Score=133.45  Aligned_cols=195  Identities=11%  Similarity=0.069  Sum_probs=129.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCc--------
Q 004207          554 STSKVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT--------  620 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~D-----g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dgt--------  620 (768)
                      |...+.+++|||||++||.++.+     ..|++||+.+++.+... .+...+..++|+|| +.|+.++.|+.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            33468899999999998877554     36999999999876432 12222357899999 99988887664        


Q ss_pred             ------EEEEECCCCCee-EEEee--cCCCCeEEEEEeCCCCeEEEEEeC----CCcEEEEECCCC--eeEEEEe-cCCC
Q 004207          621 ------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINNG--SCAGVFK-CQSG  684 (768)
Q Consensus       621 ------IrVWDl~t~~~~-~~~~~--~h~~~V~slafsp~g~~lLaSgs~----Dg~I~iWDl~sg--~~i~~~~-~~~~  684 (768)
                            |++|++.++... ...+.  .+...+.++.|+|+|+.+++++..    +..|++||+.++  .+...+. ....
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence                  899999776521 22232  233458899999999977766642    348999999877  4133333 3334


Q ss_pred             eeEEEEecCCCEEEEEEcC----CeEEEEECCCceEeeecceeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEE
Q 004207          685 ATQMRFQPRLGRILAAAIE----NYISILDVETQVCRLKLQTLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS  759 (768)
Q Consensus       685 i~sl~fsp~~~~llags~D----g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs  759 (768)
                      +... ++|++..|+..+.+    ..|.+||+.+..               .... .+..+...+.+++|+ ++.++++..
T Consensus       319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~---------------~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~  381 (741)
T 1yr2_A          319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST---------------PRFDTVVPESKDNLESVGIA-GNRLFASYI  381 (741)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS---------------CEEEEEECCCSSEEEEEEEE-BTEEEEEEE
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc---------------cccEEEecCCCCeEEEEEEE-CCEEEEEEE
Confidence            4444 45888888888764    347777776531               0111 122344456677777 556778888


Q ss_pred             CCCcEEEe
Q 004207          760 HDKCVKIW  767 (768)
Q Consensus       760 ~DG~V~IW  767 (768)
                      .|+..+||
T Consensus       382 ~dg~~~l~  389 (741)
T 1yr2_A          382 HDAKSQVL  389 (741)
T ss_dssp             ETTEEEEE
T ss_pred             ECCEEEEE
Confidence            88887776

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.19  E-value=5.1e-09  Score=109.96  Aligned_cols=200  Identities=8%  Similarity=0.056  Sum_probs=135.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEE-------EeCCCcEEEEECCCCeEEEEec----cCCCCEEEEEEcCC-CCEEEEEeCCCc
Q 004207          553 ASTSKVESCHFSPDGKLLAT-------GGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPS-LSRLATSSADRT  620 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaS-------gs~Dg~I~VWdl~t~~~~~tl~----~h~~~V~sl~fspd-g~~LaTgs~Dgt  620 (768)
                      ..-....+++|++++.++++       +..++.|.+||..+++......    ++...+.+++++++ ++++++ +.++.
T Consensus        15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~   93 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLG   93 (314)
T ss_dssp             CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTE
T ss_pred             ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCC
Confidence            34445789999999988887       5678899999988877653322    24467899999999 654544 44557


Q ss_pred             EEEEECCCCCeeEEE-eec----CCCCeEEEEEeCCCCeEEEEEeCC---------------CcEEEEECCCCeeEEEEe
Q 004207          621 VRVWDTENPDYSLRT-FTG----HSTTVMSLDFHPSKEDLLCSCDNN---------------SEIRYWSINNGSCAGVFK  680 (768)
Q Consensus       621 IrVWDl~t~~~~~~~-~~~----h~~~V~slafsp~g~~lLaSgs~D---------------g~I~iWDl~sg~~i~~~~  680 (768)
                      |.+||.+ ++. ... ...    ....+.++++++++. ++++...+               +.|..||.. ++......
T Consensus        94 l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~  169 (314)
T 1pjx_A           94 LLVVQTD-GTF-EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT  169 (314)
T ss_dssp             EEEEETT-SCE-EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred             EEEEeCC-CCE-EEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence            9999998 553 222 111    123588999999986 44455444               567778776 66554444


Q ss_pred             cCCCeeEEEEe----cCCCEEEEEE-cCCeEEEEECC-CceEeeecceeEEeecCCCceEEeccCC-CCeeEEEEeCCCC
Q 004207          681 CQSGATQMRFQ----PRLGRILAAA-IENYISILDVE-TQVCRLKLQTLELWNMTENKTLTLSAHD-KLVSSLAASTVNG  753 (768)
Q Consensus       681 ~~~~i~sl~fs----p~~~~llags-~Dg~I~IwD~~-t~~~~~~~~~I~iwd~~~~~~~~l~~H~-~~I~sla~spdg~  753 (768)
                      .......++|+    +++..++++. .++.|.+||.. ++....    ..++       ..+..+. ..+..++++++|.
T Consensus       170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~----~~~~-------~~~~~~~~~~p~~i~~d~~G~  238 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN----KKVW-------GHIPGTHEGGADGMDFDEDNN  238 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE----EEEE-------EECCCCSSCEEEEEEEBTTCC
T ss_pred             CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc----ceEE-------EECCCCCCCCCCceEECCCCC
Confidence            44567889999    9987766665 57889999875 332110    1111       1122333 5578899999999


Q ss_pred             EEEEEECCCcEEEeC
Q 004207          754 MVASASHDKCVKIWK  768 (768)
Q Consensus       754 ~LaSgs~DG~V~IWD  768 (768)
                      ++++...++.|.+||
T Consensus       239 l~v~~~~~~~i~~~d  253 (314)
T 1pjx_A          239 LLVANWGSSHIEVFG  253 (314)
T ss_dssp             EEEEEETTTEEEEEC
T ss_pred             EEEEEcCCCEEEEEc
Confidence            888887888899886

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.18  E-value=5.9e-09  Score=110.40  Aligned_cols=208  Identities=7%  Similarity=0.005  Sum_probs=142.4

Q ss_pred             ecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004207          551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (768)
Q Consensus       551 l~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~  629 (768)
                      +..+.....+..|+++++ ++++...++.|..|+. +++ ...+..+...+..++|+++++++++...++.|.+||.+ +
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g  116 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G  116 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence            334555678899999998 5667777889999998 444 34454566779999999999876665566889999986 4


Q ss_pred             CeeEEEeecC-----CCCeEEEEEeCCCCeEEEE----EeC-------------CCcEEEEECCCCeeEEEEecCCCeeE
Q 004207          630 DYSLRTFTGH-----STTVMSLDFHPSKEDLLCS----CDN-------------NSEIRYWSINNGSCAGVFKCQSGATQ  687 (768)
Q Consensus       630 ~~~~~~~~~h-----~~~V~slafsp~g~~lLaS----gs~-------------Dg~I~iWDl~sg~~i~~~~~~~~i~s  687 (768)
                      ..  ..+..+     ...+.+++++++|. ++++    |..             .+.|..||..+++..... .......
T Consensus       117 ~~--~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~g  192 (305)
T 3dr2_A          117 QA--HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNG  192 (305)
T ss_dssp             CE--EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEE
T ss_pred             CE--EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcc
Confidence            43  222111     13467899999987 5544    321             256888888777655544 4455678


Q ss_pred             EEEecCCCEEEEEEcC------CeEEEEECCCceE-----eee---------------------cceeEEeecCCCceEE
Q 004207          688 MRFQPRLGRILAAAIE------NYISILDVETQVC-----RLK---------------------LQTLELWNMTENKTLT  735 (768)
Q Consensus       688 l~fsp~~~~llags~D------g~I~IwD~~t~~~-----~~~---------------------~~~I~iwd~~~~~~~~  735 (768)
                      ++|+|++..|+++...      +.|.+||+.....     ...                     ...|.+|+........
T Consensus       193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~gv~~~~~~g~~~~~  272 (305)
T 3dr2_A          193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTGVCVFDSDGQLLGH  272 (305)
T ss_dssp             EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSSEEEEECTTSCEEEE
T ss_pred             eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCCcEEEECCCCCEEEE
Confidence            9999999988887765      6899999764321     000                     0146667764443334


Q ss_pred             eccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207          736 LSAHDKLVSSLAASTVNGMVASASHDKCVKI  766 (768)
Q Consensus       736 l~~H~~~I~sla~spdg~~LaSgs~DG~V~I  766 (768)
                      +..+. .+.+++|+++++.|+.++.++..++
T Consensus       273 ~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          273 IPTPG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             EECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             EECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            44333 5889999999998988888776655

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.14  E-value=5.2e-09  Score=115.20  Aligned_cols=214  Identities=12%  Similarity=0.123  Sum_probs=140.1

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccCC-------CCEEEEEEcCCCC
Q 004207          548 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHT-------QWITDVRFSPSLS  610 (768)
Q Consensus       548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs----------~Dg~I~VWdl~t~~~~~tl~~h~-------~~V~sl~fspdg~  610 (768)
                      +..+.....+ . +.++|||+++++++          .++.|.+||..+++.+.++....       .....++|+|||+
T Consensus        72 ~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk  149 (386)
T 3sjl_D           72 IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK  149 (386)
T ss_dssp             EEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred             EEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC
Confidence            3344444444 4 99999999887765          36789999999999998875321       2356799999999


Q ss_pred             EEEEEeC--CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-CeeEEEEec-----C
Q 004207          611 RLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-----Q  682 (768)
Q Consensus       611 ~LaTgs~--DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~~-----~  682 (768)
                      +|+++..  ++.|.|+|+.+.+. +..+.-. +   |..+.|.+...+++.+.||.+.++++.+ ++.+.....     .
T Consensus       150 ~lyVan~~~~~~VsVID~~t~~v-v~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~  224 (386)
T 3sjl_D          150 TLLFYQFSPAPAVGVVDLEGKAF-KRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED  224 (386)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEE-EEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT
T ss_pred             EEEEEEcCCCCeEEEEECCCCcE-EEEEECC-C---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccc
Confidence            9998874  68999999998775 4454321 1   2233455555565777799999999976 555332211     1


Q ss_pred             CCe-eEEEEecCCCEEEEEEcCCeEEEEECCCce--Eeeec---------------------------------------
Q 004207          683 SGA-TQMRFQPRLGRILAAAIENYISILDVETQV--CRLKL---------------------------------------  720 (768)
Q Consensus       683 ~~i-~sl~fsp~~~~llags~Dg~I~IwD~~t~~--~~~~~---------------------------------------  720 (768)
                      ..+ ....|.+..+.++..+.++.|+++|+.+..  ....+                                       
T Consensus       225 ~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~  304 (386)
T 3sjl_D          225 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW  304 (386)
T ss_dssp             SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred             ccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccc
Confidence            111 124665334455567778999999986542  11000                                       


Q ss_pred             ------ceeEEeecCCCceEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 004207          721 ------QTLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK  768 (768)
Q Consensus       721 ------~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs-~DG~V~IWD  768 (768)
                            ..|.+.|..+.+++....-...+.+|++++|++ +|+++. .++.|.|+|
T Consensus       305 ~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD  360 (386)
T 3sjl_D          305 RHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHD  360 (386)
T ss_dssp             CTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEE
T ss_pred             ccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEE
Confidence                  134466666666654332234678999999996 666654 589999886

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.13  E-value=2.5e-08  Score=107.00  Aligned_cols=182  Identities=13%  Similarity=0.006  Sum_probs=121.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc----CCCCEEEEEEcCCCCEEEEEeC------CCcEEEEE
Q 004207          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE----HTQWITDVRFSPSLSRLATSSA------DRTVRVWD  625 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~----h~~~V~sl~fspdg~~LaTgs~------DgtIrVWD  625 (768)
                      ..|.+++|+++|+++++. .+ .|.+||..+++.......    ....+.+++++|+|+++++...      .+.|..+|
T Consensus        90 ~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~  167 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA  167 (326)
T ss_dssp             SCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence            569999999999877754 44 599999988776533221    1235899999999987766542      24555555


Q ss_pred             CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC--CC-eeE--EEEe----cCCCeeEEEEecCCCE
Q 004207          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NG-SCA--GVFK----CQSGATQMRFQPRLGR  696 (768)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~--sg-~~i--~~~~----~~~~i~sl~fsp~~~~  696 (768)
                        +++  +..+..+......++|+|+++.++++.+.++.|.+||+.  ++ ...  ..+.    ....+..+++++++..
T Consensus       168 --~g~--~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~l  243 (326)
T 2ghs_A          168 --KGK--VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI  243 (326)
T ss_dssp             --TTE--EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE
T ss_pred             --CCc--EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCE
Confidence              333  233333334678999999998787777778899999986  55 321  1221    1234678899999876


Q ss_pred             EEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEe-CCCCEEEEEEC
Q 004207          697 ILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAS-TVNGMVASASH  760 (768)
Q Consensus       697 llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~s-pdg~~LaSgs~  760 (768)
                      +++...++.|.+||.. +....                .+..+...|++++|+ ++++.|++++.
T Consensus       244 wva~~~~~~v~~~d~~-g~~~~----------------~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          244 WNARWGEGAVDRYDTD-GNHIA----------------RYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEEEETTTEEEEECTT-CCEEE----------------EEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EEEEeCCCEEEEECCC-CCEEE----------------EEECCCCCcEEEEEecCCCCEEEEEec
Confidence            6666667889888874 32211                122344568999998 88877765554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.12  E-value=1.2e-08  Score=113.40  Aligned_cols=203  Identities=11%  Similarity=0.090  Sum_probs=132.1

Q ss_pred             EEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEe----ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 004207          561 CHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (768)
Q Consensus       561 l~fSpdg~~LaSgs~Dg--~I~VWdl~t~~~~~tl----~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~  634 (768)
                      ++|++++++|+++..++  .|.+|+..++.....+    ......+.+++++|++..|+++..++.|+.||..++...+.
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence            89999999999888766  7889988765543343    22446678999999655666677888999999987653222


Q ss_pred             E---eecCCCCe-E-EEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC----------------CCeeEEEEecC
Q 004207          635 T---FTGHSTTV-M-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----------------SGATQMRFQPR  693 (768)
Q Consensus       635 ~---~~~h~~~V-~-slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~----------------~~i~sl~fsp~  693 (768)
                      .   ..++...- . .++|+|++..++++...++.|+.||.... . ..+...                .....++++++
T Consensus       256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d  333 (409)
T 3hrp_A          256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-C-EWFCGSATQKTVQDGLREEALFAQPNGMTVDED  333 (409)
T ss_dssp             EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-E-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT
T ss_pred             ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-E-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC
Confidence            1   12222222 3 99999977778888888899999997643 2 222221                23678999999


Q ss_pred             CCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          694 LGRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       694 ~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      +..+++-. .++.|+.||+.++........-..+....+.  .....-.....|++++++.++++-..++.|+.+
T Consensus       334 G~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~--~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i  406 (409)
T 3hrp_A          334 GNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGT--PLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY  406 (409)
T ss_dssp             CCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBS--TTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred             CCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCC--hhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence            88655555 6788999997665432111000000000000  000112458899999998777777778888765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.11  E-value=5e-08  Score=101.12  Aligned_cols=197  Identities=9%  Similarity=-0.008  Sum_probs=138.0

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004207          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (768)
Q Consensus       552 ~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~-tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~  630 (768)
                      ......+.++++.++|+++++...++.|.+||.. ++... .+..+...+.++++++++.++++...++.|.+||.. ++
T Consensus        16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG   93 (300)
T ss_dssp             SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence            3455679999999999988877778999999988 55543 223334678999999999888777668899999988 55


Q ss_pred             eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEE-Ee-cCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYISI  708 (768)
Q Consensus       631 ~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~-~~-~~~~i~sl~fsp~~~~llags~Dg~I~I  708 (768)
                      ............+.++++.+++. ++++...++.|..||.. ++.... +. ....+..+++.+++..+++...++.|.+
T Consensus        94 ~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  171 (300)
T 2qc5_A           94 FTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR  171 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             eEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence            42223333446789999999876 56566667889999987 655432 22 2356888999998875544445778998


Q ss_pred             EECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          709 LDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       709 wD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ||. ++...       .+.        ...+...+.++++++++.++++....+.|.+||
T Consensus       172 ~~~-~g~~~-------~~~--------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  215 (300)
T 2qc5_A          172 ITN-TGKLE-------EYP--------LPTNAAAPVGITSGNDGALWFVEIMGNKIGRIT  215 (300)
T ss_dssp             ECT-TCCEE-------EEE--------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             ECC-CCcEE-------Eee--------CCCCCCCcceEEECCCCCEEEEccCCCEEEEEc
Confidence            987 33221       111        112345678899998887766665666777775

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.09  E-value=1.3e-09  Score=120.31  Aligned_cols=177  Identities=10%  Similarity=0.010  Sum_probs=125.5

Q ss_pred             cccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 004207          501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV  580 (768)
Q Consensus       501 ~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~  580 (768)
                      ++.....++++|+.|+ +.+|...+-.   ....   .....  +.....+ .+.. |+.++|  |+++|+++ .++.|+
T Consensus        44 ais~~~gll~a~~~~~-l~v~~~~~l~---~~~~---~~~~~--~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~  109 (388)
T 1xip_A           44 DISNSKSLFVAASGSK-AVVGELQLLR---DHIT---SDSTP--LTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALY  109 (388)
T ss_dssp             EEETTTTEEEEEETTE-EEEEEHHHHH---HHHH---SSSCC--CCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEE
T ss_pred             EEcCCCCEEEEeCCCE-EEEEEhhHhh---hhhc---ccccc--ccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEE
Confidence            3345667888888874 4457432110   0000   00000  1111122 3556 999999  99999999 889999


Q ss_pred             EEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe
Q 004207          581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (768)
Q Consensus       581 VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs  660 (768)
                      +||+.+.........|...|.++.+.+.  .+++++.||.|.+||+.++.. ..    +...|+|++|+|+|   ++.|.
T Consensus       110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~-~~----~~~~Vs~v~WSpkG---~~vg~  179 (388)
T 1xip_A          110 SLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST-KQ----LAQNVTSFDVTNSQ---LAVLL  179 (388)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE-EE----EEESEEEEEECSSE---EEEEE
T ss_pred             EEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc-cc----ccCCceEEEEcCCc---eEEEE
Confidence            9999887766667778888999888765  388899999999999997664 22    34689999999998   45688


Q ss_pred             CCCcEEEEECCCCee--EEEEe----------cCCCeeEEEEecCCCEEEEEE
Q 004207          661 NNSEIRYWSINNGSC--AGVFK----------CQSGATQMRFQPRLGRILAAA  701 (768)
Q Consensus       661 ~Dg~I~iWDl~sg~~--i~~~~----------~~~~i~sl~fsp~~~~llags  701 (768)
                      .||.|++|+...+.+  ..++.          +...|.++.|.+++.++++-+
T Consensus       180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            899999999988776  55662          245689999999877766533

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.08  E-value=9.4e-09  Score=114.34  Aligned_cols=202  Identities=9%  Similarity=0.039  Sum_probs=137.1

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCeeE
Q 004207          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSL  633 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg--tIrVWDl~t~~~~~  633 (768)
                      ....+|+|+++++++++...++.|++||.+++.+......... .. ++|+++++.|+++..++  .|.+|+...+.. .
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~  207 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P  207 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence            4578999999999888877789999999998877665544333 34 99999999999988876  788888876543 2


Q ss_pred             EEe---ec-CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEE----EecCCCe--e-EEEEecCCCEEEEEE-
Q 004207          634 RTF---TG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQSGA--T-QMRFQPRLGRILAAA-  701 (768)
Q Consensus       634 ~~~---~~-h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~----~~~~~~i--~-sl~fsp~~~~llags-  701 (768)
                      ..+   .. ....+.+++++|++..+++ +..++.|+.||..++.....    .......  . .++|+|+++.|+++. 
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~  286 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ  286 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence            232   12 4466889999996566665 66688999999987764332    1111222  2 899999766666665 


Q ss_pred             cCCeEEEEECCCceEeeecceeEEeecC--CCce--EEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 004207          702 IENYISILDVETQVCRLKLQTLELWNMT--ENKT--LTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK  768 (768)
Q Consensus       702 ~Dg~I~IwD~~t~~~~~~~~~I~iwd~~--~~~~--~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~IWD  768 (768)
                      .++.|+.||.......       +....  .+..  ......-.....++|++++.++++-+ .++.|++|+
T Consensus       287 ~~~~I~~~~~~g~~~~-------~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~  351 (409)
T 3hrp_A          287 NLSSVYKITPDGECEW-------FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD  351 (409)
T ss_dssp             TTTEEEEECTTCCEEE-------EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred             CCCEEEEEecCCCEEE-------EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence            5678999987653111       00100  0000  00001124578999999999777777 788888875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.06  E-value=7.9e-08  Score=101.35  Aligned_cols=202  Identities=10%  Similarity=0.043  Sum_probs=129.9

Q ss_pred             cCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004207          552 PASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (768)
Q Consensus       552 ~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~  630 (768)
                      ..+..-..+..|++++. ++++...++.|+.||..+++.. .+. ....+.+++|+++++++++ . +..|.+||.++++
T Consensus         9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~   84 (297)
T 3g4e_A            9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS   84 (297)
T ss_dssp             CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred             ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence            34444567899999654 5666667889999999887653 332 3467999999999995554 4 5679999998765


Q ss_pred             eeEEEee-c--CCCCeEEEEEeCCCCeEEEEEeC--------CCcEEEEECCC-CeeEEEEecCCCeeEEEEecCCCEEE
Q 004207          631 YSLRTFT-G--HSTTVMSLDFHPSKEDLLCSCDN--------NSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRIL  698 (768)
Q Consensus       631 ~~~~~~~-~--h~~~V~slafsp~g~~lLaSgs~--------Dg~I~iWDl~s-g~~i~~~~~~~~i~sl~fsp~~~~ll  698 (768)
                      ....... .  ....+.+++++|+|..++.+...        .....+|.+.. ++.............++|+|++..++
T Consensus        85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~ly  164 (297)
T 3g4e_A           85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFY  164 (297)
T ss_dssp             EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEE
T ss_pred             EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEE
Confidence            4221111 1  12357889999998844433221        12234554432 44444344445567899999998876


Q ss_pred             EEE-cCCeEEEEEC--CCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          699 AAA-IENYISILDV--ETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       699 ags-~Dg~I~IwD~--~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ++. .++.|.+||+  .++....    .++       ...+..+...+..++++++|.+.++...++.|.+||
T Consensus       165 v~~~~~~~i~~~~~d~~~G~~~~----~~~-------~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d  226 (297)
T 3g4e_A          165 YIDSLSYSVDAFDYDLQTGQISN----RRS-------VYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLD  226 (297)
T ss_dssp             EEEGGGTEEEEEEECTTTCCEEE----EEE-------EEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEEC
T ss_pred             EecCCCCcEEEEeccCCCCcccC----cEE-------EEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEc
Confidence            665 4688999987  3433211    011       111222345678899999998877777778888886

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.05  E-value=6e-09  Score=124.55  Aligned_cols=193  Identities=10%  Similarity=-0.006  Sum_probs=122.4

Q ss_pred             eEEEEEcCCCCEEEEEeCCCc--------------EEEEECCCCe----EEEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004207          558 VESCHFSPDGKLLATGGHDKK--------------AVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~Dg~--------------I~VWdl~t~~----~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg  619 (768)
                      +..++|+|| +.|+.++.|+.              |++|++.++.    ++.....+...+..+.|+|||++|+..+.++
T Consensus       211 ~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~  289 (741)
T 1yr2_A          211 FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG  289 (741)
T ss_dssp             SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT
T ss_pred             eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc
Confidence            357899999 98888877654              8899987764    2222233434689999999999988877554


Q ss_pred             -----cEEEEECCCCCee-EEEeecCCCCeEEEEEeCCCCeEEEEEeC---CCcEEEEECCCC--eeEEEEecCC-CeeE
Q 004207          620 -----TVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDN---NSEIRYWSINNG--SCAGVFKCQS-GATQ  687 (768)
Q Consensus       620 -----tIrVWDl~t~~~~-~~~~~~h~~~V~slafsp~g~~lLaSgs~---Dg~I~iWDl~sg--~~i~~~~~~~-~i~s  687 (768)
                           .|++||+.++... ...+..+...+.... .|+++.+++....   ++.|.+||+.++  .....+.... .+..
T Consensus       290 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~  368 (741)
T 1yr2_A          290 TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES  368 (741)
T ss_dssp             TCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEE
T ss_pred             CCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEE
Confidence                 8999999876322 445555555555554 4888877766543   456999999874  3444443332 3556


Q ss_pred             EEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEec-cCCCCeeEEEEeCCCCEEE-EEE---CCC
Q 004207          688 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVA-SAS---HDK  762 (768)
Q Consensus       688 l~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~-~H~~~I~sla~spdg~~La-Sgs---~DG  762 (768)
                      ++|. .+..+++...|+..+||.+.               +..+....+. .+.+.|..++++|++..|+ +.+   ..+
T Consensus       369 ~~~~-~~~lv~~~~~dg~~~l~~~~---------------~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~  432 (741)
T 1yr2_A          369 VGIA-GNRLFASYIHDAKSQVLAFD---------------LDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPA  432 (741)
T ss_dssp             EEEE-BTEEEEEEEETTEEEEEEEE---------------TTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEE
T ss_pred             EEEE-CCEEEEEEEECCEEEEEEEe---------------CCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence            7776 33456666678776665432               1111111222 2356688899999887554 322   346


Q ss_pred             cEEEeC
Q 004207          763 CVKIWK  768 (768)
Q Consensus       763 ~V~IWD  768 (768)
                      .|++||
T Consensus       433 ~i~~~d  438 (741)
T 1yr2_A          433 TVLALD  438 (741)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            777775

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.03  E-value=4.8e-09  Score=124.51  Aligned_cols=197  Identities=13%  Similarity=0.058  Sum_probs=127.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCc-------
Q 004207          553 ASTSKVESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------  620 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs-----~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dgt-------  620 (768)
                      +|...|..++|||||++||.+.     .+..|+|||+.+++.+.... +......++|+ |++.|+.++.+..       
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            3555688999999999888432     23579999999998654321 11113568899 9999999888754       


Q ss_pred             ------EEEEECCCCCe---eEEEeec-CCCCeEEEEEeCCCCeEEEEEeC---CCcEEEEECCCCe-eEEEEec-CCCe
Q 004207          621 ------VRVWDTENPDY---SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDN---NSEIRYWSINNGS-CAGVFKC-QSGA  685 (768)
Q Consensus       621 ------IrVWDl~t~~~---~~~~~~~-h~~~V~slafsp~g~~lLaSgs~---Dg~I~iWDl~sg~-~i~~~~~-~~~i  685 (768)
                            |++|++.++..   .+..... |...+.++.|+|+|+.++++...   +..|++||+.++. ....+.. ....
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence                  99999987642   2222233 44567889999999988777653   3589999998763 2333333 3333


Q ss_pred             eEEEEecCCCEEEEEEcC----CeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC-
Q 004207          686 TQMRFQPRLGRILAAAIE----NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-  760 (768)
Q Consensus       686 ~sl~fsp~~~~llags~D----g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~-  760 (768)
                      ... |+++++.|+..+..    +.|.++|+.+....              ....+..|...+.  .|++++++|+.... 
T Consensus       284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~--------------~~~~l~~~~~~~~--~~s~~g~~lv~~~~~  346 (693)
T 3iuj_A          284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA--------------HWRDLIPERQQVL--TVHSGSGYLFAEYMV  346 (693)
T ss_dssp             EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG--------------GCEEEECCCSSCE--EEEEETTEEEEEEEE
T ss_pred             EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc--------------ccEEEecCCCCEE--EEEEECCEEEEEEEE
Confidence            333 67777777766643    45666666553210              0123345555554  78888887776654 


Q ss_pred             CC--cEEEeC
Q 004207          761 DK--CVKIWK  768 (768)
Q Consensus       761 DG--~V~IWD  768 (768)
                      |+  .|++||
T Consensus       347 ~g~~~l~~~d  356 (693)
T 3iuj_A          347 DATARVEQFD  356 (693)
T ss_dssp             TTEEEEEEEC
T ss_pred             CCeeEEEEEE
Confidence            44  566664

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.03  E-value=1.2e-08  Score=113.89  Aligned_cols=214  Identities=12%  Similarity=0.108  Sum_probs=137.0

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccC-------CCCEEEEEEcCCCC
Q 004207          548 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLS  610 (768)
Q Consensus       548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs----------~Dg~I~VWdl~t~~~~~tl~~h-------~~~V~sl~fspdg~  610 (768)
                      +..+..-..+  .+.++|||++|+++.          .++.|.++|..+++.+.++...       ......++|+||++
T Consensus       112 v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk  189 (426)
T 3c75_H          112 LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNK  189 (426)
T ss_dssp             EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSS
T ss_pred             EEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCC
Confidence            3334333445  799999999888775          3678999999999998877532       12345789999999


Q ss_pred             EEEEEeC--CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEE----ecC-C
Q 004207          611 RLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQ-S  683 (768)
Q Consensus       611 ~LaTgs~--DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~----~~~-~  683 (768)
                      +|+++..  +++|.|.|+.+.+. +..+.-. +   +....|++...+++.+.||.+.+.++.+++.....    ... .
T Consensus       190 ~lyV~n~~~~~~VsVID~~t~kv-v~~I~v~-g---~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~  264 (426)
T 3c75_H          190 NLLFYQFSPAPAVGVVDLEGKTF-DRMLDVP-D---CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDE  264 (426)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEE-EEEEECC-S---EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTS
T ss_pred             EEEEEecCCCCeEEEEECCCCeE-EEEEEcC-C---ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCC
Confidence            9999875  57899999998775 4444421 1   13445555556666677888888888655544221    111 1


Q ss_pred             C-eeEEEEecCCCEEEEEEcCCeEEEEECCCceEe---------------------------e--------e--------
Q 004207          684 G-ATQMRFQPRLGRILAAAIENYISILDVETQVCR---------------------------L--------K--------  719 (768)
Q Consensus       684 ~-i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~---------------------------~--------~--------  719 (768)
                      + ...+.|.+++..++..+.++.|.++|.......                           .        .        
T Consensus       265 p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt  344 (426)
T 3c75_H          265 LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK  344 (426)
T ss_dssp             CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC
T ss_pred             ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccc
Confidence            1 123456666666666666666777766321100                           0        0        


Q ss_pred             ----cceeEEeecCCCceEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 004207          720 ----LQTLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK  768 (768)
Q Consensus       720 ----~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs-~DG~V~IWD  768 (768)
                          -..|.++|..+.+.+....-......|+|+|+++ +++++. .++.|.|+|
T Consensus       345 hk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID  399 (426)
T 3c75_H          345 HKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYD  399 (426)
T ss_dssp             TTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             ccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence                0124555555555543222222478999999999 888888 589999986

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.02  E-value=1.2e-08  Score=121.17  Aligned_cols=189  Identities=11%  Similarity=0.038  Sum_probs=123.9

Q ss_pred             EEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCe----EEEEecc-CCCCEEEEEEcCCCCEEEEEeC---
Q 004207          559 ESCHFSPDGKLLATGGHDKK-------------AVLWCTESFT----VKSTLEE-HTQWITDVRFSPSLSRLATSSA---  617 (768)
Q Consensus       559 ~sl~fSpdg~~LaSgs~Dg~-------------I~VWdl~t~~----~~~tl~~-h~~~V~sl~fspdg~~LaTgs~---  617 (768)
                      .+++|+ |++.|+.++.+..             |++|++.+..    ++..... |...+..+.|+||+++|+....   
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            467899 9999998887743             9999987654    3333333 4556789999999998765443   


Q ss_pred             -CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC---CcEEEEECCCCee---EEEEecCCCeeEEEE
Q 004207          618 -DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSC---AGVFKCQSGATQMRF  690 (768)
Q Consensus       618 -DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D---g~I~iWDl~sg~~---i~~~~~~~~i~sl~f  690 (768)
                       +..|++||+.++......+..+....... |+++++.++++...+   +.|..+|+.++..   ...+.....+.  .|
T Consensus       257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~  333 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TV  333 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EE
T ss_pred             CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EE
Confidence             24899999987754456666666666655 667777787777654   6799999988654   22333333343  88


Q ss_pred             ecCCCEEEEEEcCC---eEEEEECCCceEeeecceeEEeecCCCceEEec-cCCCCeeEEEEeCCCCEEEEEECC----C
Q 004207          691 QPRLGRILAAAIEN---YISILDVETQVCRLKLQTLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHD----K  762 (768)
Q Consensus       691 sp~~~~llags~Dg---~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~-~H~~~I~sla~spdg~~LaSgs~D----G  762 (768)
                      ++++++|+....++   .|++||+.+...                 ..+. .+.+.+..+.+++++..|+....+    +
T Consensus       334 s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-----------------~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~  396 (693)
T 3iuj_A          334 HSGSGYLFAEYMVDATARVEQFDYEGKRV-----------------REVALPGLGSVSGFNGKHDDPALYFGFENYAQPP  396 (693)
T ss_dssp             EEETTEEEEEEEETTEEEEEEECTTSCEE-----------------EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCC
T ss_pred             EEECCEEEEEEEECCeeEEEEEECCCCee-----------------EEeecCCCceEEeeecCCCCCEEEEEecCCCCCC
Confidence            99988888777544   567777664322                 1111 233446666677777655544333    5


Q ss_pred             cEEEeC
Q 004207          763 CVKIWK  768 (768)
Q Consensus       763 ~V~IWD  768 (768)
                      .|+.||
T Consensus       397 ~l~~~d  402 (693)
T 3iuj_A          397 TLYRFE  402 (693)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            666654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.99  E-value=1.6e-07  Score=100.66  Aligned_cols=192  Identities=11%  Similarity=0.013  Sum_probs=125.5

Q ss_pred             eEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEe
Q 004207          558 VESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (768)
Q Consensus       558 I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~  636 (768)
                      ..+++|+|++. ++++...++.|.+||..+++... +. ....|.+++|+++++++++. .+ .|.+||.++++..  .+
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~--~~  124 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLT--LH  124 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEE--EE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEE--EE
Confidence            56789999755 56666678899999998876542 32 34679999999998877654 44 4999999877642  22


Q ss_pred             ecC-----CCCeEEEEEeCCCCeEEEEEeC-----CCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE-cCCe
Q 004207          637 TGH-----STTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENY  705 (768)
Q Consensus       637 ~~h-----~~~V~slafsp~g~~lLaSgs~-----Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~  705 (768)
                      ...     ...+.+++++|+|..++.+.+.     .+.|..+|  +++.............++|+|++..++++. .++.
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~  202 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR  202 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence            211     2358899999998744433221     24566666  565544333334567899999998776665 4678


Q ss_pred             EEEEECC--Cc-eEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          706 ISILDVE--TQ-VCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       706 I~IwD~~--t~-~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |.+||+.  ++ ....    .+++       ..+......+..++++++|.++++...++.|.+||
T Consensus       203 I~~~d~~~~~Gl~~~~----~~~~-------~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d  257 (326)
T 2ghs_A          203 LMRVPLDARTGLPTGK----AEVF-------IDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD  257 (326)
T ss_dssp             EEEEEBCTTTCCBSSC----CEEE-------EECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred             EEEEEcccccCCcccC----ceEE-------EECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence            9999975  43 2110    0111       01112334567888888888777766667788775

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.96  E-value=2.1e-08  Score=108.35  Aligned_cols=205  Identities=9%  Similarity=0.071  Sum_probs=132.0

Q ss_pred             CCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEe-------ccCCCCEEEEEEcCCCCEEEEEeC-----CCcE
Q 004207          556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSA-----DRTV  621 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs--~Dg~I~VWdl~t~~~~~tl-------~~h~~~V~sl~fspdg~~LaTgs~-----DgtI  621 (768)
                      ..+..|+++++|+++++..  .++.++||.+.+++.. .+       ..|-..+.+|+|+++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            6789999999999988864  2343555555455433 22       124467999999999876655433     5789


Q ss_pred             EEEECCCCCeeEEEeec------CCCCeEEEEEeCCCCeEEEEEe---CCCcEEEEECCCCeeEEEEec-----------
Q 004207          622 RVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSCAGVFKC-----------  681 (768)
Q Consensus       622 rVWDl~t~~~~~~~~~~------h~~~V~slafsp~g~~lLaSgs---~Dg~I~iWDl~sg~~i~~~~~-----------  681 (768)
                      .+||+.+++. +..+..      +...+..+++++++..++++..   .++.|.+||+.+++..+.+..           
T Consensus        96 ~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           96 VAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            9999988764 333332      2245689999987666777766   678999999988776655421           


Q ss_pred             -------------------CCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCceEeeecceeEEeecCCCceEEeccCCC
Q 004207          682 -------------------QSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK  741 (768)
Q Consensus       682 -------------------~~~i~sl~fsp~~~~llags~Dg-~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~  741 (768)
                                         ...+..++|+|++..|+++..++ .|..++....... .....+++     ..+...++..
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~-~~~~~~~~-----~~~~~~g~~g  248 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNL-QLTDAELG-----SKIERYSEKP  248 (343)
T ss_dssp             EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCT-TCCHHHHH-----TTCEEEEECC
T ss_pred             eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCC-CCChhhhh-----cceEecccCC
Confidence                               02357799999988888887665 4544443210000 00000000     0001113344


Q ss_pred             CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          742 LVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       742 ~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ....++++++|.++++...++.|.+||
T Consensus       249 ~pdgia~d~~G~l~va~~~~~~V~~~d  275 (343)
T 2qe8_A          249 ICDGISIDKDHNIYVGDLAHSAIGVIT  275 (343)
T ss_dssp             SCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred             CCceEEECCCCCEEEEccCCCeEEEEE
Confidence            567789999998888888888898885

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.90  E-value=2.6e-07  Score=102.75  Aligned_cols=241  Identities=12%  Similarity=0.109  Sum_probs=148.6

Q ss_pred             CCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC------C
Q 004207          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD------K  577 (768)
Q Consensus       504 ~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D------g  577 (768)
                      ....+++.|..++.|.+++...... +-++.+..+..+-..       +.....-..+.++|+| +++++..+      +
T Consensus        94 ~r~~l~v~~l~s~~I~viD~~t~p~-~p~~~k~ie~~~~~~-------~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g  164 (462)
T 2ece_A           94 ERRFLIVPGLRSSRIYIIDTKPNPR-EPKIIKVIEPEEVKK-------VSGYSRLHTVHCGPDA-IYISALGNEEGEGPG  164 (462)
T ss_dssp             CSCEEEEEBTTTCCEEEEECCSCTT-SCEEEEEECHHHHHH-------HHCEEEEEEEEECSSC-EEEEEEEETTSCSCC
T ss_pred             cCCEEEEccCCCCeEEEEECCCCCC-Cceeeeeechhhccc-------ccCCCcccceeECCCe-EEEEcCCCcCCCCCC
Confidence            3455666777888999997643321 111111111000000       0001124557788999 77776555      7


Q ss_pred             cEEEEECCCCeEEEEeccCC---CCEEEEEEcCCCCEEEEEe-------------------CCCcEEEEECCCCCeeEEE
Q 004207          578 KAVLWCTESFTVKSTLEEHT---QWITDVRFSPSLSRLATSS-------------------ADRTVRVWDTENPDYSLRT  635 (768)
Q Consensus       578 ~I~VWdl~t~~~~~tl~~h~---~~V~sl~fspdg~~LaTgs-------------------~DgtIrVWDl~t~~~~~~~  635 (768)
                      .|.++|.++++++.++....   ..-+.+.|+|+++.+++..                   .+.+|.+||+.+++. +.+
T Consensus       165 ~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~-~~t  243 (462)
T 2ece_A          165 GILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR-IHS  243 (462)
T ss_dssp             EEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE-EEE
T ss_pred             eEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE-eeE
Confidence            89999999999999986332   2245688999999988885                   368999999998643 555


Q ss_pred             eecC--CCCeEEEEE--eCCCCeEEEEEe-----CCCcEEEEECCCCee--EEEE--ec-----------------CCCe
Q 004207          636 FTGH--STTVMSLDF--HPSKEDLLCSCD-----NNSEIRYWSINNGSC--AGVF--KC-----------------QSGA  685 (768)
Q Consensus       636 ~~~h--~~~V~slaf--sp~g~~lLaSgs-----~Dg~I~iWDl~sg~~--i~~~--~~-----------------~~~i  685 (768)
                      +...  ......|.|  +|+++..++++.     .+++|.+|....+..  +..+  ..                 ....
T Consensus       244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p  323 (462)
T 2ece_A          244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV  323 (462)
T ss_dssp             EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred             EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence            5432  123455656  999998888887     788898776654432  1111  10                 2346


Q ss_pred             eEEEEecCCCEEEEEEc-CCeEEEEECCCceEeeecceeEEeecCCCceEEeccC------CCCeeEEEEeCCCCEEEEE
Q 004207          686 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAH------DKLVSSLAASTVNGMVASA  758 (768)
Q Consensus       686 ~sl~fsp~~~~llags~-Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H------~~~I~sla~spdg~~LaSg  758 (768)
                      ..+.+++++++|+++.. .+.|.+||+...........+.+     +-......|      .+....++++|||++|+++
T Consensus       324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t-----GG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVa  398 (462)
T 2ece_A          324 TDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL-----GGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVT  398 (462)
T ss_dssp             CCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-----BTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEE
T ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe-----CCeeccccccccccCCCCCCEEEEcCCCCEEEEE
Confidence            78999999999988875 68999999863211111111111     000000001      1235789999999999988


Q ss_pred             E
Q 004207          759 S  759 (768)
Q Consensus       759 s  759 (768)
                      .
T Consensus       399 N  399 (462)
T 2ece_A          399 N  399 (462)
T ss_dssp             C
T ss_pred             c
Confidence            7

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.88  E-value=2.5e-10  Score=125.25  Aligned_cols=144  Identities=15%  Similarity=0.081  Sum_probs=81.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCC-CeE
Q 004207          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVM  644 (768)
Q Consensus       566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~-~V~  644 (768)
                      ++..|++++.|+.|+.||..+++.+..+..  +.+.+..+..++..+++++.|+.|+.||.++++. +..+..+.. .+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-SEECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-eeeeeccCccccc
Confidence            678899999999999999999999988876  4565666666777888888999999999988765 333322211 010


Q ss_pred             -EEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEe
Q 004207          645 -SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR  717 (768)
Q Consensus       645 -slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~  717 (768)
                       +..+. .+. .+++++.|+.|+.||.++|+.+..+..+..   ..++|+++.+++++.|+.|+.||.++++..
T Consensus        85 ~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~  153 (369)
T 2hz6_A           85 ASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELR  153 (369)
T ss_dssp             TCSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred             cCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence             01111 223 455777899999999999999887765432   345667888999999999999999887654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.86  E-value=6.9e-07  Score=98.04  Aligned_cols=146  Identities=12%  Similarity=0.001  Sum_probs=105.1

Q ss_pred             EcCCCCEEEEEeC--CC---cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECC
Q 004207          563 FSPDGKLLATGGH--DK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTE  627 (768)
Q Consensus       563 fSpdg~~LaSgs~--Dg---~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs----------~DgtIrVWDl~  627 (768)
                      ..|++++++++..  ..   +|.+||..+++.+.++.....+  .++|+||+++|+++.          .++.|.+||..
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~  105 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence            3467777666643  22   8899999999998888654444  999999999999886          36789999998


Q ss_pred             CCCeeEEEeecC-------CCCeEEEEEeCCCCeEEEEEeC-CCcEEEEECCCCeeEEE-EecCCCeeEEEEecCCC-EE
Q 004207          628 NPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRLG-RI  697 (768)
Q Consensus       628 t~~~~~~~~~~h-------~~~V~slafsp~g~~lLaSgs~-Dg~I~iWDl~sg~~i~~-~~~~~~i~sl~fsp~~~-~l  697 (768)
                      +.+. +..+.-.       ......+.|+|+|++++++... ++.|.++| .+++.+.. +.....   +.+.|.+. .+
T Consensus       106 t~~~-~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~  180 (373)
T 2mad_H          106 TFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTF  180 (373)
T ss_pred             CCcE-EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceE
Confidence            7664 3333211       1235689999999988876644 57899999 99998887 665433   44455543 45


Q ss_pred             EEEEcCCeEEEEECCCceE
Q 004207          698 LAAAIENYISILDVETQVC  716 (768)
Q Consensus       698 lags~Dg~I~IwD~~t~~~  716 (768)
                      ++.+.|+.+.++|. ++..
T Consensus       181 ~~~~~dg~~~~vd~-~g~~  198 (373)
T 2mad_H          181 YLLCAQGGLAKTDH-AGGA  198 (373)
T ss_pred             EEEcCCCCEEEEEC-CCcE
Confidence            66677888888888 5543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.86  E-value=1.3e-07  Score=103.97  Aligned_cols=148  Identities=11%  Similarity=0.021  Sum_probs=114.1

Q ss_pred             EEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEE
Q 004207          561 CHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWD  625 (768)
Q Consensus       561 l~fSpdg~~LaSgs~-----Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs----------~DgtIrVWD  625 (768)
                      ....|+++.+++...     ++.|.++|..+++.+.++.....+ . ++++||+++|++++          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            345689998887765     679999999999999988765555 4 99999999988876          367899999


Q ss_pred             CCCCCeeEEEee-cC------CCCeEEEEEeCCCCeEEEEEeC-CCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEE
Q 004207          626 TENPDYSLRTFT-GH------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI  697 (768)
Q Consensus       626 l~t~~~~~~~~~-~h------~~~V~slafsp~g~~lLaSgs~-Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~l  697 (768)
                      ..+.+. +..+. +.      ......+.|+|+|++++++... ++.|.++|+.+++.+.++...+.  ...+......+
T Consensus       116 ~~t~~v-~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~  192 (386)
T 3sjl_D          116 PVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTF  192 (386)
T ss_dssp             TTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEE
T ss_pred             CCCCeE-EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCcee
Confidence            999875 44332 21      1246679999999988877643 78999999999999999875442  23343344567


Q ss_pred             EEEEcCCeEEEEECCC
Q 004207          698 LAAAIENYISILDVET  713 (768)
Q Consensus       698 lags~Dg~I~IwD~~t  713 (768)
                      ++.+.||.+.++++.+
T Consensus       193 ~~~~~DG~~~~v~~~~  208 (386)
T 3sjl_D          193 FMHCRDGSLAKVAFGT  208 (386)
T ss_dssp             EEEETTSCEEEEECCS
T ss_pred             EEECCCCCEEEEECCC
Confidence            8889999999999976

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.84  E-value=1.5e-07  Score=101.63  Aligned_cols=194  Identities=10%  Similarity=0.031  Sum_probs=127.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEeccC------CCCEEEEEEcCCCCEE-EEEe---C
Q 004207          553 ASTSKVESCHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEH------TQWITDVRFSPSLSRL-ATSS---A  617 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs~-----Dg~I~VWdl~t~~~~~tl~~h------~~~V~sl~fspdg~~L-aTgs---~  617 (768)
                      .|-..+.+++|+++++++++-..     ++.|.+||+.+++.+.++..+      ...+..+++++++..+ ++..   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            45678999999999886665543     578999999999877766432      2356899999865454 5544   5


Q ss_pred             CCcEEEEECCCCCeeEEEeecCC-----------------------------CCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 004207          618 DRTVRVWDTENPDYSLRTFTGHS-----------------------------TTVMSLDFHPSKEDLLCSCDNNSEIRYW  668 (768)
Q Consensus       618 DgtIrVWDl~t~~~~~~~~~~h~-----------------------------~~V~slafsp~g~~lLaSgs~Dg~I~iW  668 (768)
                      ++.|.+||+.+++. .+.+.+|.                             ..+..|+|+|+++.++++......|..+
T Consensus       144 ~~~i~v~d~~~g~~-~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~  222 (343)
T 2qe8_A          144 KAALIRVDLQTGLA-ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRI  222 (343)
T ss_dssp             GCEEEEEETTTCCE-EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred             CCeEEEEECCCCCE-EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEE
Confidence            78999999987653 33332221                             2368899999988676555444466555


Q ss_pred             ECC---CCe--------eEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEec
Q 004207          669 SIN---NGS--------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLS  737 (768)
Q Consensus       669 Dl~---sg~--------~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~  737 (768)
                      +..   .+.        .+..+........+++++++..+++...++.|.+||..++...      .+.        . .
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~------~~~--------~-~  287 (343)
T 2qe8_A          223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK------LLV--------T-D  287 (343)
T ss_dssp             EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE------EEE--------E-C
T ss_pred             EHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE------EEE--------E-C
Confidence            532   111        0111222234567999999877777777889999998444321      010        0 1


Q ss_pred             cCCCCeeEEEEeCCCCEEEEEECCC
Q 004207          738 AHDKLVSSLAASTVNGMVASASHDK  762 (768)
Q Consensus       738 ~H~~~I~sla~spdg~~LaSgs~DG  762 (768)
                      .+-..+++|+|.+++.++++.+..+
T Consensus       288 ~~~~~p~~va~~~~g~l~v~~~~~~  312 (343)
T 2qe8_A          288 EKLSWTDSFNFGSDGYLYFDCNQLH  312 (343)
T ss_dssp             GGGSCEEEEEECTTSCEEEEECCGG
T ss_pred             CceecCCeeEECCCCcEEEEeCccc
Confidence            1234588999999988888776543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.79  E-value=7.1e-08  Score=105.77  Aligned_cols=194  Identities=9%  Similarity=0.000  Sum_probs=118.4

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccC-------CCCEEEEEEcCCCC
Q 004207          548 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLS  610 (768)
Q Consensus       548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs----------~Dg~I~VWdl~t~~~~~tl~~h-------~~~V~sl~fspdg~  610 (768)
                      +..+.....+  .+.|+||+++++++.          .++.|.+||+.+++.+.++..+       ......++|+||++
T Consensus        59 ~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk  136 (368)
T 1mda_H           59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA  136 (368)
T ss_dssp             EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred             EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC
Confidence            4444444445  799999999888886          3688999999999999988643       12356899999999


Q ss_pred             EEEEEeC--CCcEEE--EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC------------------------
Q 004207          611 RLATSSA--DRTVRV--WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------------------------  662 (768)
Q Consensus       611 ~LaTgs~--DgtIrV--WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D------------------------  662 (768)
                      +|+++..  +..|.+  +|+.+    +..+.- .+.   +.+.|++...+++.+.|                        
T Consensus       137 ~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~  208 (368)
T 1mda_H          137 CLLFFLFGSSAAAGLSVPGASD----DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG  208 (368)
T ss_dssp             CEEEEECSSSCEEEEEETTTEE----EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCT
T ss_pred             EEEEEccCCCCeEEEEEEchhh----ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeee
Confidence            9999875  357888  98865    111110 000   01112222222222222                        


Q ss_pred             ----------------------CcEEEEECCCC--eeEEEEec-----------CCCeeEEEEecCCCEEEEEEc-C---
Q 004207          663 ----------------------SEIRYWSINNG--SCAGVFKC-----------QSGATQMRFQPRLGRILAAAI-E---  703 (768)
Q Consensus       663 ----------------------g~I~iWDl~sg--~~i~~~~~-----------~~~i~sl~fsp~~~~llags~-D---  703 (768)
                                            +.|.+.|+...  +.+..+..           ......+.|+|++++++++.. .   
T Consensus       209 ~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~  288 (368)
T 1mda_H          209 AQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRS  288 (368)
T ss_dssp             TSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSC
T ss_pred             eeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCc
Confidence                                  45555555432  12221211           011122678888888777643 2   


Q ss_pred             -----CeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 004207          704 -----NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK  768 (768)
Q Consensus       704 -----g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs-~DG~V~IWD  768 (768)
                           +.+.++|+.+.+.+..+.              + +  .....|+|+++++ ++++.. .++.|.|+|
T Consensus       289 ~~~~~~~~~ViD~~t~~vv~~i~--------------v-g--~~p~gi~~s~Dg~~l~va~~~~~~~VsVID  343 (368)
T 1mda_H          289 CLAAAENTSSVTASVGQTSGPIS--------------N-G--HDSDAIIAAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             TTSCEEEEEEEESSSCCEEECCE--------------E-E--EEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             ccccCCCEEEEECCCCeEEEEEE--------------C-C--CCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence                 356688888776544332              1 1  1478999999997 566666 599999986

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.77  E-value=1.9e-09  Score=118.20  Aligned_cols=184  Identities=10%  Similarity=-0.023  Sum_probs=101.4

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      .+..|++++.|+.|..|+...+.                ....+   ..  +.+.+..+..++..+++++.|+.|+.||.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~----------------~~W~~---~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~   66 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGS----------------IKWTL---KE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGS   66 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCC----------------EEEEE---EC--CCSCCCC-----CCEEECTTTCCEEEC--
T ss_pred             eCCEEEEEcCCCEEEEEECCCCC----------------EEEEe---cC--CCceecceEcCCCEEEEeCCCCEEEEEEC
Confidence            46788899999999999654432                11222   12  34445555567878888889999999999


Q ss_pred             CCCeEEEEeccCCCC-EE-EEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC
Q 004207          585 ESFTVKSTLEEHTQW-IT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (768)
Q Consensus       585 ~t~~~~~tl~~h~~~-V~-sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D  662 (768)
                      ++++.+..+..+... +. +..+. ++..|++++.|+.|+.||.++++. +..+..+.    .+.++|++. .+++++.|
T Consensus        67 ~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~-~w~~~~~~----~~~~~p~~~-~v~~~~~d  139 (369)
T 2hz6_A           67 KNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEK-QQTLSSAF----ADSLSPSTS-LLYLGRTE  139 (369)
T ss_dssp             ---CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEE
T ss_pred             CCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcE-EEEecCCC----cccccccCC-EEEEEecC
Confidence            999887776543211 10 01111 345778888999999999998875 33333332    234456555 55577789


Q ss_pred             CcEEEEECCCCeeEEEEecCCCeeEEEEecCC---CEEEEEEcCCeEEEEECCCceEe
Q 004207          663 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRL---GRILAAAIENYISILDVETQVCR  717 (768)
Q Consensus       663 g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~---~~llags~Dg~I~IwD~~t~~~~  717 (768)
                      +.|+.||.++++.+..+.... ....++..+.   +.+++++.++.|+.||..+++..
T Consensus       140 g~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          140 YTITMYDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL  196 (369)
T ss_dssp             EEEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred             CEEEEEECCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence            999999999998876665321 1223333322   56888899999999999887653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.71  E-value=1.9e-06  Score=89.45  Aligned_cols=199  Identities=14%  Similarity=0.110  Sum_probs=130.0

Q ss_pred             eEEEEecCCCCC--eEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCc
Q 004207          546 TEFQLIPASTSK--VESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRT  620 (768)
Q Consensus       546 ~~~~~l~~H~~~--I~sl~fSpdg~~LaSgs~Dg--~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs-~Dgt  620 (768)
                      +-+..+ .|...  .-.+.|+ ++.++.+.+.+|  .|+++|+++++.+..+.... .+......+++..|+... .++.
T Consensus        32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~  108 (262)
T 3nol_A           32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGL  108 (262)
T ss_dssp             EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSE
T ss_pred             EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCE
Confidence            334444 45443  4788998 677777777766  89999999999998886543 333322223345555554 4889


Q ss_pred             EEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC------CCeeEEEEecCC
Q 004207          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMRFQPRL  694 (768)
Q Consensus       621 IrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~------~~i~sl~fsp~~  694 (768)
                      +.+||.++.+. +..+... ..-..++  +++..++++- .++.|.++|..+.+.+..+...      ..+..+.|. + 
T Consensus       109 v~v~D~~t~~~-~~ti~~~-~eG~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~-  181 (262)
T 3nol_A          109 GFVWNIRNLRQ-VRSFNYD-GEGWGLT--HNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-D-  181 (262)
T ss_dssp             EEEEETTTCCE-EEEEECS-SCCCCEE--ECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-T-
T ss_pred             EEEEECccCcE-EEEEECC-CCceEEe--cCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-C-
Confidence            99999998876 5555432 2223344  5666666554 4788999999999988887752      234457776 4 


Q ss_pred             CEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceEE--eccCCCCeeEEEEeCCCCEEEEEEC
Q 004207          695 GRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASH  760 (768)
Q Consensus       695 ~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~--l~~H~~~I~sla~spdg~~LaSgs~  760 (768)
                      +.+++.. .++.|.+.|..+++....      +++.......  ...-....+.|||+|+++.|++.+.
T Consensus       182 G~lyan~w~~~~I~vIDp~tG~V~~~------Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          182 GEIFANVWQTNKIVRIDPETGKVTGI------IDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TEEEEEETTSSEEEEECTTTCBEEEE------EECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CEEEEEEccCCeEEEEECCCCcEEEE------EECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            4666666 578999999999887443      3433211100  1122346789999999887777764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.69  E-value=1.1e-05  Score=87.32  Aligned_cols=193  Identities=11%  Similarity=0.057  Sum_probs=121.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCe--
Q 004207          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--  643 (768)
Q Consensus       566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V--  643 (768)
                      ++..|++++.++.|..+|.++++.+................  +..+++++.++.|..+|.++++. +..+.......  
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~-~W~~~~~~~~~~~  178 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAV-KWTVNLDMPSLSL  178 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCE-EEEEECCC-----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcE-EEEEeCCCCceee
Confidence            46678888899999999999999987775543222222222  45788888999999999998875 33332211110  


Q ss_pred             ---EEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC-----------e-eEEEEecCCCEEEEEEcCCeEEE
Q 004207          644 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----------A-TQMRFQPRLGRILAAAIENYISI  708 (768)
Q Consensus       644 ---~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~-----------i-~sl~fsp~~~~llags~Dg~I~I  708 (768)
                         ...... + . .++++..++.|..+|..+++.+..+.....           + ....+  .++.+++++.++.|..
T Consensus       179 ~~~~~~~~~-~-~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~  253 (376)
T 3q7m_A          179 RGESAPTTA-F-G-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTA  253 (376)
T ss_dssp             CCCCCCEEE-T-T-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEE
T ss_pred             cCCCCcEEE-C-C-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEE
Confidence               122222 2 3 455677789999999999998877764321           1 11111  2467888888899999


Q ss_pred             EECCCceEeeecc---------------------eeEEeecCCCceEEecc--CCCCeeEEEEeCCCCEEEEEECCCcEE
Q 004207          709 LDVETQVCRLKLQ---------------------TLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCVK  765 (768)
Q Consensus       709 wD~~t~~~~~~~~---------------------~I~iwd~~~~~~~~l~~--H~~~I~sla~spdg~~LaSgs~DG~V~  765 (768)
                      +|..+++......                     .+..+|..+++..-...  ....+......  +..|++++.+|.|.
T Consensus       254 ~d~~tG~~~w~~~~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~  331 (376)
T 3q7m_A          254 LDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLH  331 (376)
T ss_dssp             EETTTCCEEEEECCCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEE
T ss_pred             EECCCCcEEeeccCCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEE
Confidence            9998775543321                     45566666666542221  11223333333  56788888899888


Q ss_pred             EeC
Q 004207          766 IWK  768 (768)
Q Consensus       766 IWD  768 (768)
                      +||
T Consensus       332 ~~d  334 (376)
T 3q7m_A          332 WIN  334 (376)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.68  E-value=7.8e-07  Score=105.36  Aligned_cols=193  Identities=12%  Similarity=0.105  Sum_probs=128.2

Q ss_pred             CCcEEEEECCCCeEEEEeccCCCC--------------------------------EEEEEEcCCCCEEEEEeCCC----
Q 004207          576 DKKAVLWCTESFTVKSTLEEHTQW--------------------------------ITDVRFSPSLSRLATSSADR----  619 (768)
Q Consensus       576 Dg~I~VWdl~t~~~~~tl~~h~~~--------------------------------V~sl~fspdg~~LaTgs~Dg----  619 (768)
                      ++.|+.||..+++.+..+......                                ...++++|++.+|+.++.++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            789999999999999877542211                                12578889888888887664    


Q ss_pred             ---------------cEEEEECCCCCeeEEEeec-CC-------CCeEEEEEeCCCC--eEEEEEeCCCcEEEEECCCCe
Q 004207          620 ---------------TVRVWDTENPDYSLRTFTG-HS-------TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGS  674 (768)
Q Consensus       620 ---------------tIrVWDl~t~~~~~~~~~~-h~-------~~V~slafsp~g~--~lLaSgs~Dg~I~iWDl~sg~  674 (768)
                                     +|..+|.++++..-..-.. |.       .....+....+|+  .++++++.+|.|+++|.++|+
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~  348 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence                           5999999998863222221 21       1223334444553  577789999999999999999


Q ss_pred             eEEEEecCC-----------C-------------------------eeEEEEecCCCEEEEEEcCCeEEEEECCCce---
Q 004207          675 CAGVFKCQS-----------G-------------------------ATQMRFQPRLGRILAAAIENYISILDVETQV---  715 (768)
Q Consensus       675 ~i~~~~~~~-----------~-------------------------i~sl~fsp~~~~llags~Dg~I~IwD~~t~~---  715 (768)
                      .+..+....           .                         ...++|+|+.+.+++...+-...++......   
T Consensus       349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~  428 (677)
T 1kb0_A          349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ  428 (677)
T ss_dssp             EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred             EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence            987765321           0                         0146889998888887765444444322000   


Q ss_pred             ----------------E-------eeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          716 ----------------C-------RLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       716 ----------------~-------~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                      .       ......|..||+.+++.+-...+...+....+..++.++++++.||.|++||
T Consensus       429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D  504 (677)
T 1kb0_A          429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (677)
T ss_dssp             CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence                            0       0011357778888777664444444555566677788999999999999986

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.65  E-value=9.5e-07  Score=98.57  Aligned_cols=146  Identities=10%  Similarity=0.021  Sum_probs=108.4

Q ss_pred             CCCCEEEEEeCC-----CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCC
Q 004207          565 PDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENP  629 (768)
Q Consensus       565 pdg~~LaSgs~D-----g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs----------~DgtIrVWDl~t~  629 (768)
                      ++++.++++...     +.|.++|..+++.+.++.....+  .++++||+++|+++.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            466766655442     69999999999999998765555  899999999888886          3678999999988


Q ss_pred             CeeEEEee-c------CCCCeEEEEEeCCCCeEEEEEeC-CCcEEEEECCCCeeEEEEecCCCeeEEEEecCC-CEEEEE
Q 004207          630 DYSLRTFT-G------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAA  700 (768)
Q Consensus       630 ~~~~~~~~-~------h~~~V~slafsp~g~~lLaSgs~-Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~-~~llag  700 (768)
                      +. +..+. +      .......+.|+|+|++++++... ++.|.++|+.+.+.+..+.....   ....|++ ..+++.
T Consensus       160 ~v-v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~  235 (426)
T 3c75_H          160 LP-IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMN  235 (426)
T ss_dssp             CE-EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEE
T ss_pred             cE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEE
Confidence            75 43332 2      12345678999999988866543 68999999999999998886432   2334433 456777


Q ss_pred             EcCCeEEEEECCCceE
Q 004207          701 AIENYISILDVETQVC  716 (768)
Q Consensus       701 s~Dg~I~IwD~~t~~~  716 (768)
                      +.||.+.+.+..+++.
T Consensus       236 ~~dG~~~~V~~~~~~v  251 (426)
T 3c75_H          236 CRDGSLARVDFADGET  251 (426)
T ss_dssp             ETTSSEEEEECCTTCC
T ss_pred             cCCCCEEEEECCCCcE
Confidence            8899888888855443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.65  E-value=7.7e-06  Score=85.40  Aligned_cols=207  Identities=7%  Similarity=-0.016  Sum_probs=132.6

Q ss_pred             eeEEEEecCCCC--CeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEEeccCC-CCEEEEEEcCCCCEEEEE-eCC
Q 004207          545 FTEFQLIPASTS--KVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATS-SAD  618 (768)
Q Consensus       545 ~~~~~~l~~H~~--~I~sl~fSpdg~~LaSgs~--Dg~I~VWdl~t~~~~~tl~~h~-~~V~sl~fspdg~~LaTg-s~D  618 (768)
                      ++.+..+ .|..  ....+.|++|+.++++.+.  ++.|.++|+.+++.+..+.... .....+++.  +..|+.+ -.+
T Consensus         9 ~~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~   85 (266)
T 2iwa_A            9 VEVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred             ceEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence            3344444 3443  3679999998755555543  5799999999999998875322 223455665  4455544 457


Q ss_pred             CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC------CeeEEEEec
Q 004207          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------GATQMRFQP  692 (768)
Q Consensus       619 gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~------~i~sl~fsp  692 (768)
                      +.|.++|..+.+. +..+......  ...++++++.++++. .++.|.++|..+.+.+..+....      .+..+.|. 
T Consensus        86 ~~v~viD~~t~~v-~~~i~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-  160 (266)
T 2iwa_A           86 NIGFIYDRRTLSN-IKNFTHQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-  160 (266)
T ss_dssp             SEEEEEETTTTEE-EEEEECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred             CEEEEEECCCCcE-EEEEECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence            8999999998765 5555422122  233556778777655 58899999999999888877532      35678888 


Q ss_pred             CCCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCce---EEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEE
Q 004207          693 RLGRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKT---LTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKI  766 (768)
Q Consensus       693 ~~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~---~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~I  766 (768)
                      ++ .+++.. .++.|.+.|..+++....+.      +.....   ..-..-....+.|+|+|+++.|++++ ..+.|.+
T Consensus       161 dg-~lyvn~~~~~~V~vID~~tg~V~~~I~------~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~  232 (266)
T 2iwa_A          161 NG-EVWANIWQTDCIARISAKDGTLLGWIL------LPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE  232 (266)
T ss_dssp             TT-EEEEEETTSSEEEEEETTTCCEEEEEE------CHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred             CC-EEEEecCCCCeEEEEECCCCcEEEEEE------CCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence            54 666665 57899999999987654332      110000   00001124578999999987555544 5666654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.64  E-value=1.8e-06  Score=95.97  Aligned_cols=197  Identities=12%  Similarity=0.113  Sum_probs=133.0

Q ss_pred             CCCCEEEE-EeCCCcEEEEECCCC----eEEEEec-------cCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEEC
Q 004207          565 PDGKLLAT-GGHDKKAVLWCTESF----TVKSTLE-------EHTQWITDVRFSPSLSRLATSSAD------RTVRVWDT  626 (768)
Q Consensus       565 pdg~~LaS-gs~Dg~I~VWdl~t~----~~~~tl~-------~h~~~V~sl~fspdg~~LaTgs~D------gtIrVWDl  626 (768)
                      .++++|++ +..+++|+|+|+.+.    +...+++       ........+...|++ +++++..+      +.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            77887654 566789999999765    6777773       111245567888999 77776665      78999999


Q ss_pred             CCCCeeEEEeecCC---CCeEEEEEeCCCCeEEEEEe-------------------CCCcEEEEECCCCeeEEEEecC--
Q 004207          627 ENPDYSLRTFTGHS---TTVMSLDFHPSKEDLLCSCD-------------------NNSEIRYWSINNGSCAGVFKCQ--  682 (768)
Q Consensus       627 ~t~~~~~~~~~~h~---~~V~slafsp~g~~lLaSgs-------------------~Dg~I~iWDl~sg~~i~~~~~~--  682 (768)
                      ++.+. +..+....   ..-+.+.|+|+++.++ +..                   .+.+|.+||+.+++.+.++...  
T Consensus       172 ~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~  249 (462)
T 2ece_A          172 YSFEP-LGKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE  249 (462)
T ss_dssp             TTCCE-EEECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred             CCCeE-EEEEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence            98775 55554221   2245688899988555 442                   3689999999999888888864  


Q ss_pred             -CCeeEEEE--ecCCCEEEEEEc------CCeEEEEECCCceEeeecceeEEeecCCCceEE-e-------ccCCCCeeE
Q 004207          683 -SGATQMRF--QPRLGRILAAAI------ENYISILDVETQVCRLKLQTLELWNMTENKTLT-L-------SAHDKLVSS  745 (768)
Q Consensus       683 -~~i~sl~f--sp~~~~llags~------Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~-l-------~~H~~~I~s  745 (768)
                       .....+.|  +|++.++++++.      ++.|.+|....+..    ..+.+.|+...+... +       .+-...+..
T Consensus       250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~----~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~  325 (462)
T 2ece_A          250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW----NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD  325 (462)
T ss_dssp             EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE----EEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred             CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce----eEEEEEeCCCccccccccccccccccCCCceeE
Confidence             23445555  999999887774      56888777654322    223334433322111 1       011245788


Q ss_pred             EEEeCCCCEEEEEEC-CCcEEEeC
Q 004207          746 LAASTVNGMVASASH-DKCVKIWK  768 (768)
Q Consensus       746 la~spdg~~LaSgs~-DG~V~IWD  768 (768)
                      |.+++|+++|+++.. .+.|.+||
T Consensus       326 I~lS~DGrfLYVSnrg~d~Vavfd  349 (462)
T 2ece_A          326 IDISLDDKFLYLSLWGIGEVRQYD  349 (462)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEE
Confidence            999999999988875 67888875

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.64  E-value=2.1e-06  Score=101.91  Aligned_cols=192  Identities=10%  Similarity=0.067  Sum_probs=127.8

Q ss_pred             CCcEEEEECCCCeEEEEeccC--C-----------------------------CCEEEEEEcCCCCEEEEEeCCCc----
Q 004207          576 DKKAVLWCTESFTVKSTLEEH--T-----------------------------QWITDVRFSPSLSRLATSSADRT----  620 (768)
Q Consensus       576 Dg~I~VWdl~t~~~~~tl~~h--~-----------------------------~~V~sl~fspdg~~LaTgs~Dgt----  620 (768)
                      ++.|+.||.++++.+..+...  .                             .....++++|+..+|+.++.++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            789999999999998876421  0                             01125788888889999888764    


Q ss_pred             ---------------EEEEECCCCCeeEEEeec--CC-------CCeEEEEEeCCCC--eEEEEEeCCCcEEEEECCCCe
Q 004207          621 ---------------VRVWDTENPDYSLRTFTG--HS-------TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGS  674 (768)
Q Consensus       621 ---------------IrVWDl~t~~~~~~~~~~--h~-------~~V~slafsp~g~--~lLaSgs~Dg~I~iWDl~sg~  674 (768)
                                     |..||.++++. +-.+..  |.       ..+.......+|.  .+++.++.+|.|+++|.++|+
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~-~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  340 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEY-VWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE  340 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCE-EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCce-eEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence                           99999999886 333322  21       1222223323443  367789999999999999999


Q ss_pred             eEEEEecCC----------------------------------------CeeEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004207          675 CAGVFKCQS----------------------------------------GATQMRFQPRLGRILAAAIENYISILDVETQ  714 (768)
Q Consensus       675 ~i~~~~~~~----------------------------------------~i~sl~fsp~~~~llags~Dg~I~IwD~~t~  714 (768)
                      .+.......                                        ....++|+|+.+.+++...+....++.....
T Consensus       341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~  420 (689)
T 1yiq_A          341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA  420 (689)
T ss_dssp             EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred             EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence            875443211                                        0123789999898888887766555544321


Q ss_pred             --------e-Eee-------------------ecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207          715 --------V-CRL-------------------KLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  766 (768)
Q Consensus       715 --------~-~~~-------------------~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~I  766 (768)
                              . ...                   ....|..||+.+++++-...+...+..-.+...+.+|++++.||.|++
T Consensus       421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a  500 (689)
T 1yiq_A          421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIA  500 (689)
T ss_dssp             CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEE
T ss_pred             ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEE
Confidence                    0 000                   014688899988887743333344444456667889999999999999


Q ss_pred             eC
Q 004207          767 WK  768 (768)
Q Consensus       767 WD  768 (768)
                      ||
T Consensus       501 ~D  502 (689)
T 1yiq_A          501 YA  502 (689)
T ss_dssp             EE
T ss_pred             EE
Confidence            96

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.63  E-value=4.5e-06  Score=99.05  Aligned_cols=160  Identities=9%  Similarity=0.015  Sum_probs=113.6

Q ss_pred             EEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCeEEEEecc--CC-------CCEEEEEEcCCCC
Q 004207          559 ESCHFSPDGKLLATGGHDKK-------------------AVLWCTESFTVKSTLEE--HT-------QWITDVRFSPSLS  610 (768)
Q Consensus       559 ~sl~fSpdg~~LaSgs~Dg~-------------------I~VWdl~t~~~~~tl~~--h~-------~~V~sl~fspdg~  610 (768)
                      ..+++++++.+|+++..++.                   |..||.++++.+..+..  |.       ..+.......+++
T Consensus       238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~  317 (689)
T 1yiq_A          238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK  317 (689)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence            36788998899998887763                   99999999999988754  22       1222222223454


Q ss_pred             ---EEEEEeCCCcEEEEECCCCCeeEEEeecC---------------------------C-----------CCeEEEEEe
Q 004207          611 ---RLATSSADRTVRVWDTENPDYSLRTFTGH---------------------------S-----------TTVMSLDFH  649 (768)
Q Consensus       611 ---~LaTgs~DgtIrVWDl~t~~~~~~~~~~h---------------------------~-----------~~V~slafs  649 (768)
                         .|+.++.+|.|+++|.++++.....-...                           .           ..-..++|+
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d  397 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN  397 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence               78899999999999999988632111100                           0           001236788


Q ss_pred             CCCCeEEEEEe--------------------------------------------CCCcEEEEECCCCeeEEEEecCCCe
Q 004207          650 PSKEDLLCSCD--------------------------------------------NNSEIRYWSINNGSCAGVFKCQSGA  685 (768)
Q Consensus       650 p~g~~lLaSgs--------------------------------------------~Dg~I~iWDl~sg~~i~~~~~~~~i  685 (768)
                      |+...+++...                                            .+|.|..||+.+++.+..+..+..+
T Consensus       398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~  477 (689)
T 1yiq_A          398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF  477 (689)
T ss_dssp             TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC
T ss_pred             CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc
Confidence            88664443211                                            1377999999999999988876665


Q ss_pred             eEEEEecCCCEEEEEEcCCeEEEEECCCceEee
Q 004207          686 TQMRFQPRLGRILAAAIENYISILDVETQVCRL  718 (768)
Q Consensus       686 ~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~  718 (768)
                      ....+...++.+++++.|+.|+.||.++++.+.
T Consensus       478 ~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw  510 (689)
T 1yiq_A          478 NGGTLSTAGNLVFEGSADGRVIAYAADTGEKLW  510 (689)
T ss_dssp             CCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cCccceECCCEEEEECCCCcEEEEECCCCccce
Confidence            555667778899999999999999999987643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.62  E-value=5.5e-06  Score=89.72  Aligned_cols=192  Identities=10%  Similarity=0.050  Sum_probs=122.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCE-----EEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCC
Q 004207          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI-----TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST  641 (768)
Q Consensus       567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V-----~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~  641 (768)
                      +..+++++.++.|..+|..+++.+..+.......     ......  +..+++++.++.|..+|..+++..-........
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~  220 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQAT  220 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC--
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCC
Confidence            4578888889999999999999988775432211     112222  457888888999999999988753222211100


Q ss_pred             C---------e-EEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 004207          642 T---------V-MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV  711 (768)
Q Consensus       642 ~---------V-~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~  711 (768)
                      .         + ....+.  +. .++.++.++.|..+|.++++.+...... ....+...  ++.+++++.++.|..||.
T Consensus       221 ~~~~~~~~~~~~~~p~~~--~~-~v~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~--~~~l~~~~~~g~l~~~d~  294 (376)
T 3q7m_A          221 GSTEIDRLSDVDTTPVVV--NG-VVFALAYNGNLTALDLRSGQIMWKRELG-SVNDFIVD--GNRIYLVDQNDRVMALTI  294 (376)
T ss_dssp             ---------CCCCCCEEE--TT-EEEEECTTSCEEEEETTTCCEEEEECCC-CEEEEEEE--TTEEEEEETTCCEEEEET
T ss_pred             CCcccccccccCCCcEEE--CC-EEEEEecCcEEEEEECCCCcEEeeccCC-CCCCceEE--CCEEEEEcCCCeEEEEEC
Confidence            0         1 111112  23 4456677899999999999988766542 33444443  568888999999999999


Q ss_pred             CCceEeeecc------------------------eeEEeecCCCceEEe-ccCCCCee-EEEEeCCCCEEEEEECCCcEE
Q 004207          712 ETQVCRLKLQ------------------------TLELWNMTENKTLTL-SAHDKLVS-SLAASTVNGMVASASHDKCVK  765 (768)
Q Consensus       712 ~t~~~~~~~~------------------------~I~iwd~~~~~~~~l-~~H~~~I~-sla~spdg~~LaSgs~DG~V~  765 (768)
                      .+++......                        .+.++|..+++.+.. ......+. .....  +..|+.++.||.|+
T Consensus       295 ~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~~G~l~  372 (376)
T 3q7m_A          295 DGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAKDGTVY  372 (376)
T ss_dssp             TTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBTTSCEE
T ss_pred             CCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeCCCEEE
Confidence            8876543221                        466777777766532 22122222 22222  56788899999999


Q ss_pred             EeC
Q 004207          766 IWK  768 (768)
Q Consensus       766 IWD  768 (768)
                      +||
T Consensus       373 ~~~  375 (376)
T 3q7m_A          373 SIT  375 (376)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            885

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.59  E-value=2.8e-06  Score=89.53  Aligned_cols=185  Identities=10%  Similarity=0.054  Sum_probs=123.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 004207          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~  633 (768)
                      +...+.++.+.+++. |+.++.++.|..||.. ++.+..+......+.++.+.+++.+++ ++  +.|..|| .+++. +
T Consensus       135 ~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~-~  207 (330)
T 3hxj_A          135 KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTE-K  207 (330)
T ss_dssp             SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCE-E
T ss_pred             CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcE-E
Confidence            334466677776776 5557778999999998 887777765566677888877776544 44  7899999 55554 4


Q ss_pred             EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC-eeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004207          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVE  712 (768)
Q Consensus       634 ~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~-i~sl~fsp~~~~llags~Dg~I~IwD~~  712 (768)
                      ..+......+.++...+++. ++ .++.++.|..+|. ++..+..+..... +..+.+.++ +.|++++.++.|..||. 
T Consensus       208 ~~~~~~~~~~~~~~~~~~g~-l~-v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-g~l~v~t~~ggl~~~d~-  282 (330)
T 3hxj_A          208 WNFYAGYWTVTRPAISEDGT-IY-VTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNT-DTIYFGSYDGHLYAINP-  282 (330)
T ss_dssp             EEECCSSCCCSCCEECTTSC-EE-EEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTT-SCEEEECTTCEEEEECT-
T ss_pred             EEEccCCcceeceEECCCCe-EE-EEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCC-CeEEEecCCCCEEEECC-
Confidence            44444456688888888765 44 4566788888874 5666666654333 344555544 56888888888999986 


Q ss_pred             CceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          713 TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       713 t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      ++...        |..        ......+.++...+++. |+.++.+|.+++.
T Consensus       283 ~g~~~--------~~~--------~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~  320 (330)
T 3hxj_A          283 DGTEK--------WNF--------ETGSWIIATPVIDENGT-IYFGTRNGKFYAL  320 (330)
T ss_dssp             TSCEE--------EEE--------ECSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred             CCcEE--------EEE--------EcCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence            43322        111        11234567777777665 5668899998874

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.58  E-value=3.6e-06  Score=88.83  Aligned_cols=147  Identities=13%  Similarity=0.125  Sum_probs=102.5

Q ss_pred             CeEEEEEcCCCCEEEE----EeC-------------CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC-
Q 004207          557 KVESCHFSPDGKLLAT----GGH-------------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-  618 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaS----gs~-------------Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D-  618 (768)
                      .+.+++++++|+++++    |..             .+.|..||..+++.....  .......++|+|+++.|+.+... 
T Consensus       132 ~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~  209 (305)
T 3dr2_A          132 SPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPE  209 (305)
T ss_dssp             CCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC
T ss_pred             CCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCC
Confidence            4678999999998886    322             246778887666654433  33457889999999988887665 


Q ss_pred             -----CcEEEEECCCCCee-EEEe-ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEe
Q 004207          619 -----RTVRVWDTENPDYS-LRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ  691 (768)
Q Consensus       619 -----gtIrVWDl~t~~~~-~~~~-~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fs  691 (768)
                           +.|++||+...... ...+ ......+..++++++|. ++++ ..+ .|.+||. .++.+..+.....+.+++|.
T Consensus       210 ~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~-~~~-gv~~~~~-~g~~~~~~~~~~~~~~~~f~  285 (305)
T 3dr2_A          210 QGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSS-SGT-GVCVFDS-DGQLLGHIPTPGTASNCTFD  285 (305)
T ss_dssp             ---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEEC-CSS-EEEEECT-TSCEEEEEECSSCCCEEEEC
T ss_pred             cCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEe-cCC-cEEEECC-CCCEEEEEECCCceeEEEEe
Confidence                 78999998754311 1111 11234566789999987 4433 334 5999998 47777777776678999999


Q ss_pred             cCCCEEEEEEcCCeEEEEE
Q 004207          692 PRLGRILAAAIENYISILD  710 (768)
Q Consensus       692 p~~~~llags~Dg~I~IwD  710 (768)
                      ++++.|++++.++ ++.++
T Consensus       286 ~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          286 QAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             TTSCEEEEEETTE-EEEEE
T ss_pred             CCCCEEEEEcCCe-EEEEE
Confidence            9888888887754 44443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.53  E-value=1.2e-05  Score=95.30  Aligned_cols=161  Identities=10%  Similarity=0.030  Sum_probs=116.0

Q ss_pred             EEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCeEEEEecc--CC-------CCEEEEEEcCCC-
Q 004207          559 ESCHFSPDGKLLATGGHDK-------------------KAVLWCTESFTVKSTLEE--HT-------QWITDVRFSPSL-  609 (768)
Q Consensus       559 ~sl~fSpdg~~LaSgs~Dg-------------------~I~VWdl~t~~~~~tl~~--h~-------~~V~sl~fspdg-  609 (768)
                      ..+++++++.+|+++..++                   .|..+|.++++.+..+..  |.       .....+....+| 
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence            4678899988888887664                   599999999999987753  21       122233333466 


Q ss_pred             --CEEEEEeCCCcEEEEECCCCCeeEEEeecC----------CCCe------------------------EEEEEeCCCC
Q 004207          610 --SRLATSSADRTVRVWDTENPDYSLRTFTGH----------STTV------------------------MSLDFHPSKE  653 (768)
Q Consensus       610 --~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h----------~~~V------------------------~slafsp~g~  653 (768)
                        ..|++++.+|.|+++|.++++..-..-...          ..++                        ..++|+|++.
T Consensus       326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~  405 (677)
T 1kb0_A          326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG  405 (677)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred             EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence              689999999999999999988632221110          0001                        1568888877


Q ss_pred             eEEEEEe------------------------------------------CCCcEEEEECCCCeeEEEEecCCCeeEEEEe
Q 004207          654 DLLCSCD------------------------------------------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQ  691 (768)
Q Consensus       654 ~lLaSgs------------------------------------------~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fs  691 (768)
                      .+++...                                          ..+.|..||+.+++.+..+.....+....+.
T Consensus       406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~  485 (677)
T 1kb0_A          406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLT  485 (677)
T ss_dssp             EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEE
T ss_pred             EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceE
Confidence            5554322                                          1278999999999999988876666666677


Q ss_pred             cCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207          692 PRLGRILAAAIENYISILDVETQVCRLK  719 (768)
Q Consensus       692 p~~~~llags~Dg~I~IwD~~t~~~~~~  719 (768)
                      ..++.+++++.|+.|++||.++++.+..
T Consensus       486 ~~g~~v~~g~~dg~l~a~D~~tG~~lw~  513 (677)
T 1kb0_A          486 TAGNVVFQGTADGRLVAYHAATGEKLWE  513 (677)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             eCCCEEEEECCCCcEEEEECCCCceeee
Confidence            7888999999999999999999877544

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.51  E-value=3.9e-06  Score=96.38  Aligned_cols=196  Identities=11%  Similarity=0.081  Sum_probs=135.2

Q ss_pred             CCCEEEEEeC-CCcEEEEECCCCeEEEEeccC-CCCEEEEEE-c-CCCCEEEEEe------------------CCCcEEE
Q 004207          566 DGKLLATGGH-DKKAVLWCTESFTVKSTLEEH-TQWITDVRF-S-PSLSRLATSS------------------ADRTVRV  623 (768)
Q Consensus       566 dg~~LaSgs~-Dg~I~VWdl~t~~~~~tl~~h-~~~V~sl~f-s-pdg~~LaTgs------------------~DgtIrV  623 (768)
                      ||++++++.. +.+|.+.|+++.++...+... ...+..+++ + |+++++++++                  .++.|.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            7888776655 557999999999988855432 345888998 5 8999998885                  2458999


Q ss_pred             EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-------------------------------------CcEE
Q 004207          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------------------------------------SEIR  666 (768)
Q Consensus       624 WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-------------------------------------g~I~  666 (768)
                      +|.++.+.......+.  ....++++|+|+++++++...                                     +.|.
T Consensus       180 ID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            9999876533333322  456788999999888777443                                     2478


Q ss_pred             EEECCC--Cee-EEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCC
Q 004207          667 YWSINN--GSC-AGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKL  742 (768)
Q Consensus       667 iWDl~s--g~~-i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~  742 (768)
                      +.|.++  ++. +..+.......++.++|+|.++++++ .++.|.+||+.+......- .+   +.. ..+.....-...
T Consensus       258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~-~l---~~~-~~v~~~v~vG~g  332 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE-NA---DPR-SAVVAEPELGLG  332 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS-CC---CGG-GGEEECCBCCSC
T ss_pred             EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccc-cc---Ccc-cceEEEcCCCCC
Confidence            888887  555 66777667788999999999988776 5789999999865311000 00   000 011111122345


Q ss_pred             eeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          743 VSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       743 I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ...++|+++|...++.-.|+.|.+||
T Consensus       333 P~h~aF~~dG~aY~t~~ldsqV~kwd  358 (595)
T 1fwx_A          333 PLHTAFDGRGNAYTSLFLDSQVVKWN  358 (595)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             cceEEECCCCeEEEEEecCCcEEEEE
Confidence            78999999994334455699999996

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.49  E-value=6.1e-07  Score=103.02  Aligned_cols=155  Identities=10%  Similarity=0.065  Sum_probs=117.9

Q ss_pred             CCeEEEEE-c-CCCCEEEEEe------------------CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEE
Q 004207          556 SKVESCHF-S-PDGKLLATGG------------------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS  615 (768)
Q Consensus       556 ~~I~sl~f-S-pdg~~LaSgs------------------~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTg  615 (768)
                      ..+..+++ + |+++++++++                  .++.|.++|.++.+....+.... ....++++|++++++++
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt  212 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFST  212 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEE
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEE
Confidence            34888888 5 8999998885                  34579999999999998886433 35678899999999998


Q ss_pred             eCCC--------------------------------------cEEEEECCC--CCeeEEEeecCCCCeEEEEEeCCCCeE
Q 004207          616 SADR--------------------------------------TVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSKEDL  655 (768)
Q Consensus       616 s~Dg--------------------------------------tIrVWDl~t--~~~~~~~~~~h~~~V~slafsp~g~~l  655 (768)
                      +.+.                                      .|.|.|..+  +...+..+.. .....++.++|||+++
T Consensus       213 ~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v  291 (595)
T 1fwx_A          213 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHL  291 (595)
T ss_dssp             ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEE
T ss_pred             ecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEE
Confidence            8653                                      467777776  3321333332 2356789999999999


Q ss_pred             EEEEeCCCcEEEEECCCCe------------eEEEEecCCCeeEEEEecCCCEEEEE-EcCCeEEEEECCC
Q 004207          656 LCSCDNNSEIRYWSINNGS------------CAGVFKCQSGATQMRFQPRLGRILAA-AIENYISILDVET  713 (768)
Q Consensus       656 LaSgs~Dg~I~iWDl~sg~------------~i~~~~~~~~i~sl~fsp~~~~llag-s~Dg~I~IwD~~t  713 (768)
                      ++++..+.+|.++|+.+.+            .+..+........++|+++| ++++. -.|+.|.+||+.+
T Consensus       292 ~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          292 CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             EEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence            9999899999999998652            45555667788999999999 65544 4689999999876

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.49  E-value=4.8e-05  Score=78.32  Aligned_cols=156  Identities=8%  Similarity=-0.019  Sum_probs=106.0

Q ss_pred             CeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCeeEE
Q 004207          557 KVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLR  634 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaS-gs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTg-s~DgtIrVWDl~t~~~~~~  634 (768)
                      .+.+++|++++..|+. -..++.|.+++..+......+.........+++++++..|+.+ ...+.|.+++++.... ..
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~  115 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RV  115 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EE
Confidence            4789999997665554 4457899999988765444443333568999999976555544 4567999999875432 22


Q ss_pred             EeecCCCCeEEEEEeCCCCeEEEEEeC--CCcEEEEECCCCeeEEEEe--cCCCeeEEEEecCCCEEEEEEc-CCeEEEE
Q 004207          635 TFTGHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAI-ENYISIL  709 (768)
Q Consensus       635 ~~~~h~~~V~slafsp~g~~lLaSgs~--Dg~I~iWDl~sg~~i~~~~--~~~~i~sl~fsp~~~~llags~-Dg~I~Iw  709 (768)
                      ...........++++|++..++++...  .+.|..+++.. .....+.  .......++++++++.|+++.. .+.|.++
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~  194 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL  194 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence            222222467899999987777766544  46888888864 3333332  1245788999998888777664 5789999


Q ss_pred             ECCCc
Q 004207          710 DVETQ  714 (768)
Q Consensus       710 D~~t~  714 (768)
                      |....
T Consensus       195 ~~~g~  199 (267)
T 1npe_A          195 NPAQP  199 (267)
T ss_dssp             ETTEE
T ss_pred             ecCCC
Confidence            98753

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.49  E-value=2.4e-05  Score=80.37  Aligned_cols=198  Identities=13%  Similarity=0.088  Sum_probs=127.9

Q ss_pred             eEEEEecCCCC--CeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEeccCCCC-EEEEEEcCCCCEEE-EEeCCC
Q 004207          546 TEFQLIPASTS--KVESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLA-TSSADR  619 (768)
Q Consensus       546 ~~~~~l~~H~~--~I~sl~fSpdg~~LaSgs~Dg--~I~VWdl~t~~~~~tl~~h~~~-V~sl~fspdg~~La-Tgs~Dg  619 (768)
                      +-+..+ .|..  -.-.+.|+. +.++.+.+.+|  .|+++|+++++.+..+...... -..+++.  +..|+ ..-.++
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~   85 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNH   85 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSS
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCC
Confidence            334444 5543  356899985 55666666654  8999999999999887543321 1334444  34444 445688


Q ss_pred             cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC------CCeeEEEEecC
Q 004207          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMRFQPR  693 (768)
Q Consensus       620 tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~------~~i~sl~fsp~  693 (768)
                      .+.+||.++.+. +..+... ..-..++  +++..++++- .++.|.++|..+.+.+..+...      ..+..+.|.  
T Consensus        86 ~v~v~D~~tl~~-~~ti~~~-~~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--  158 (243)
T 3mbr_X           86 EGFVYDLATLTP-RARFRYP-GEGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--  158 (243)
T ss_dssp             EEEEEETTTTEE-EEEEECS-SCCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--
T ss_pred             EEEEEECCcCcE-EEEEeCC-CCceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--
Confidence            999999998775 5555532 2234454  4566677654 4889999999999988888752      345566766  


Q ss_pred             CCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceEE--e-ccCCCCeeEEEEeCCCCEEEEEEC
Q 004207          694 LGRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTLT--L-SAHDKLVSSLAASTVNGMVASASH  760 (768)
Q Consensus       694 ~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~--l-~~H~~~I~sla~spdg~~LaSgs~  760 (768)
                      ++.+++.. .++.|.+.|..+++....      +++.......  . ..-.+..+.|+|+|+++.|++.+.
T Consensus       159 ~G~lyanvw~s~~I~vIDp~tG~V~~~------idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          159 NGELLANVWLTSRIARIDPASGKVVAW------IDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TTEEEEEETTTTEEEEECTTTCBEEEE------EECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CCEEEEEECCCCeEEEEECCCCCEEEE------EECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            34566666 578999999999887543      3332110000  0 112346789999998877766654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.49  E-value=7.2e-05  Score=79.35  Aligned_cols=194  Identities=8%  Similarity=-0.004  Sum_probs=115.7

Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEe---cc-CCCCEEEEEEcC-CCCEEEEEeC-------------
Q 004207          557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL---EE-HTQWITDVRFSP-SLSRLATSSA-------------  617 (768)
Q Consensus       557 ~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~~~~~tl---~~-h~~~V~sl~fsp-dg~~LaTgs~-------------  617 (768)
                      .+.++++.+ +++ |+++...+.|.++|..++......   .+ .......+++.+ +++++++-..             
T Consensus        81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~  159 (322)
T 2fp8_A           81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD  159 (322)
T ss_dssp             CEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred             CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence            478899997 554 555555556888987765432211   11 123478899999 8887776533             


Q ss_pred             ----CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe--eEEEE-ecCCCeeEEEE
Q 004207          618 ----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVF-KCQSGATQMRF  690 (768)
Q Consensus       618 ----DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~--~i~~~-~~~~~i~sl~f  690 (768)
                          ++.|..||..++..  ..+.........|+|+++++.++++-..++.|.+|++....  ....+ ...+ ...+++
T Consensus       160 ~~~~~g~v~~~d~~~~~~--~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~  236 (322)
T 2fp8_A          160 TSDKTGRLIKYDPSTKET--TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKR  236 (322)
T ss_dssp             HTCCCEEEEEEETTTTEE--EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEE
T ss_pred             ccCCCceEEEEeCCCCEE--EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEE
Confidence                36788888876543  22221223456799999988777776777899999987421  11112 2223 778999


Q ss_pred             ecCCCEEEEEEc----------CCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 004207          691 QPRLGRILAAAI----------ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH  760 (768)
Q Consensus       691 sp~~~~llags~----------Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~  760 (768)
                      ++++..+++...          .+.|..||... +.      +..+....+.      .-..++++++. ++.++++...
T Consensus       237 d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G-~~------~~~~~~~~g~------~~~~~~~~~~~-~g~L~v~~~~  302 (322)
T 2fp8_A          237 NADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG-NI------LEVIPLPPPF------AGEHFEQIQEH-DGLLYIGTLF  302 (322)
T ss_dssp             CTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS-CE------EEEEECCTTT------TTSCCCEEEEE-TTEEEEECSS
T ss_pred             CCCCCEEEEecCcccccccCCCccEEEEECCCC-CE------EEEEECCCCC------ccccceEEEEe-CCEEEEeecC
Confidence            999876555544          35677777643 22      1222221111      02346667663 4555545445


Q ss_pred             CCcEEEeC
Q 004207          761 DKCVKIWK  768 (768)
Q Consensus       761 DG~V~IWD  768 (768)
                      ++.|.+++
T Consensus       303 ~~~i~~~~  310 (322)
T 2fp8_A          303 HGSVGILV  310 (322)
T ss_dssp             CSEEEEEE
T ss_pred             CCceEEEe
Confidence            66776653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.47  E-value=0.00013  Score=74.94  Aligned_cols=159  Identities=6%  Similarity=-0.056  Sum_probs=105.8

Q ss_pred             CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCe
Q 004207          556 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDY  631 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSg-s~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~---DgtIrVWDl~t~~~  631 (768)
                      ....++++++++..|+.+ ...+.|.+++.+.......+.........++++|++..|+.+..   .+.|.+++++....
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~  158 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence            457899999976655544 55678999998754332223222246789999997666666554   36888888874332


Q ss_pred             eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEE
Q 004207          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILD  710 (768)
Q Consensus       632 ~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD  710 (768)
                       .............+++++++..++++....+.|.++|+........+........+++.  ++.++++. ..+.|.++|
T Consensus       159 -~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d  235 (267)
T 1npe_A          159 -RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMD  235 (267)
T ss_dssp             -EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred             -EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEe
Confidence             12222233467899999988888888888899999999855444444433445566654  45666666 457888888


Q ss_pred             CCCceEe
Q 004207          711 VETQVCR  717 (768)
Q Consensus       711 ~~t~~~~  717 (768)
                      ..+++..
T Consensus       236 ~~~g~~~  242 (267)
T 1npe_A          236 LAISKEM  242 (267)
T ss_dssp             TTTTEEE
T ss_pred             CCCCCce
Confidence            8776543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.46  E-value=4.9e-06  Score=86.35  Aligned_cols=187  Identities=11%  Similarity=0.066  Sum_probs=123.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEe
Q 004207          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~-~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~  636 (768)
                      ...+.|+ ++.++++.+.+|.|+++|+++++.+..+ .... .-..+++..+ ++.+..-.++.+.+||.++.+. +..+
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~-~~ti  132 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQR-ERTT  132 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEE-EEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcE-EEEE
Confidence            4678887 4667778888899999999999988877 3222 1234555432 4444455688999999998775 5555


Q ss_pred             ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC------CeeEEEEecCCCEEEEEE-cCCeEEEE
Q 004207          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------GATQMRFQPRLGRILAAA-IENYISIL  709 (768)
Q Consensus       637 ~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~------~i~sl~fsp~~~~llags-~Dg~I~Iw  709 (768)
                      .. ...-..++  +++..++++- .++.|.++|..+.+.+..+....      .+..+.|. ++ .+++.. .++.|.+.
T Consensus       133 ~~-~~eGwGLt--~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s~~I~vI  206 (268)
T 3nok_A          133 RY-SGEGWGLC--YWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYANIWHSSDVLEI  206 (268)
T ss_dssp             EC-SSCCCCEE--EETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTCSEEEEE
T ss_pred             eC-CCceeEEe--cCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEECCCCeEEEE
Confidence            53 22334455  4566666554 58899999999999988887522      35667777 44 666666 57899999


Q ss_pred             ECCCceEeeecceeEEeecCCCceEE---eccCCCCeeEEEEeCCCCEEEEEEC
Q 004207          710 DVETQVCRLKLQTLELWNMTENKTLT---LSAHDKLVSSLAASTVNGMVASASH  760 (768)
Q Consensus       710 D~~t~~~~~~~~~I~iwd~~~~~~~~---l~~H~~~I~sla~spdg~~LaSgs~  760 (768)
                      |..+++....      +++.......   ...-.+..+.|||+|+++.|++.+.
T Consensus       207 Dp~TG~V~~~------Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          207 DPATGTVVGV------IDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             CTTTCBEEEE------EECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             eCCCCcEEEE------EECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            9999887543      3332110000   0112346789999998765555543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.42  E-value=0.00012  Score=77.24  Aligned_cols=189  Identities=14%  Similarity=0.095  Sum_probs=114.8

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee
Q 004207          556 SKVESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg--~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~  632 (768)
                      ..+.++++.++|+++++.....  .|..+|..+++...... ........++..+++..+++-..++.|+++|...+...
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence            3588999999999766554332  47777877777543322 12233455666555544555546889999998754321


Q ss_pred             EEEee---------cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-Cee--EEEEecCCCeeEEEEecCCCEEEEE
Q 004207          633 LRTFT---------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSC--AGVFKCQSGATQMRFQPRLGRILAA  700 (768)
Q Consensus       633 ~~~~~---------~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~--i~~~~~~~~i~sl~fsp~~~~llag  700 (768)
                      +....         ..-.....|  +++++.++++-...+.|..||+.. +..  ...+........+++++++..+++.
T Consensus       152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~  229 (306)
T 2p4o_A          152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGAT  229 (306)
T ss_dssp             EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEEC
T ss_pred             EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEe
Confidence            21111         111234555  788888888888889999999874 332  2222222456678899998766555


Q ss_pred             EcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEe---CCCCEEEEEECC
Q 004207          701 AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAS---TVNGMVASASHD  761 (768)
Q Consensus       701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~s---pdg~~LaSgs~D  761 (768)
                      ...+.|.+||... +...      +.        .+...-..+++++|.   ++++.|++++..
T Consensus       230 ~~~~~V~~~~~~G-~~~~------~~--------~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          230 HIYNSVVRIAPDR-STTI------IA--------QAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             BTTCCEEEECTTC-CEEE------EE--------CGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCeEEEECCCC-CEEE------Ee--------ecccccCCceEEEEecccCCCCEEEEECCC
Confidence            5678888888653 2110      00        011123458899998   888777766643

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.40  E-value=6.4e-05  Score=79.73  Aligned_cols=154  Identities=9%  Similarity=0.012  Sum_probs=103.1

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-c------------------CCCCEEEEEEcCCCCEEEEEeC
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-E------------------HTQWITDVRFSPSLSRLATSSA  617 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~-~------------------h~~~V~sl~fspdg~~LaTgs~  617 (768)
                      ...+++|.+++++++++..++.|..|+..+++...... .                  ....+.+|++.++...|+.+..
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~   99 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC   99 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence            45678899999878888889999999987655432111 0                  0135789999983345556655


Q ss_pred             CCcEEEEECCCCCeeEEEeec-----CCCCeEEEEEeC-CCCeEEEEEeC-----------------CCcEEEEECCCCe
Q 004207          618 DRTVRVWDTENPDYSLRTFTG-----HSTTVMSLDFHP-SKEDLLCSCDN-----------------NSEIRYWSINNGS  674 (768)
Q Consensus       618 DgtIrVWDl~t~~~~~~~~~~-----h~~~V~slafsp-~g~~lLaSgs~-----------------Dg~I~iWDl~sg~  674 (768)
                      .+.|.++|..++..  ..+..     .......+++.+ +|. ++++...                 ++.|..||..+++
T Consensus       100 ~~~i~~~d~~~g~~--~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A          100 YYHLSVVGSEGGHA--TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             TTEEEEECTTCEEC--EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             CCCEEEEeCCCCEE--EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            56688888775432  22211     123578899999 876 4444322                 3678899988776


Q ss_pred             eEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCC
Q 004207          675 CAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVET  713 (768)
Q Consensus       675 ~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t  713 (768)
                      .............++|++++..++++. ..+.|.+|++..
T Consensus       177 ~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          177 TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            544433334567899999988777665 468899999875

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.34  E-value=2.9e-06  Score=92.91  Aligned_cols=75  Identities=7%  Similarity=0.019  Sum_probs=59.9

Q ss_pred             EEEeCCCCeEEEEEe---C-----CCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEE-EEEE-cCCeEEEEECCCce
Q 004207          646 LDFHPSKEDLLCSCD---N-----NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI-LAAA-IENYISILDVETQV  715 (768)
Q Consensus       646 lafsp~g~~lLaSgs---~-----Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~l-lags-~Dg~I~IwD~~t~~  715 (768)
                      ++|++++++++++..   .     ++.+.++|+.+.+.+..+........++|+|++.++ ++.. .++.|.++|+.+.+
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence            789999998887654   2     235669999999999988877789999999999864 4555 48999999999987


Q ss_pred             Eeeec
Q 004207          716 CRLKL  720 (768)
Q Consensus       716 ~~~~~  720 (768)
                      .+..+
T Consensus       349 vv~~I  353 (368)
T 1mda_H          349 DQSSV  353 (368)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            76543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.31  E-value=5.5e-06  Score=87.18  Aligned_cols=93  Identities=11%  Similarity=0.053  Sum_probs=40.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEE
Q 004207          610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQM  688 (768)
Q Consensus       610 ~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl  688 (768)
                      ..|+.++.++.|..+|.+ ++. ......+...+.++...+++. ++ .++.++.|..||.. ++.+..+.. ...+.++
T Consensus       108 ~~l~v~t~~~~l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~~g~-l~-vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~  182 (330)
T 3hxj_A          108 DILYVTSMDGHLYAINTD-GTE-KWRFKTKKAIYATPIVSEDGT-IY-VGSNDNYLYAINPD-GTEKWRFKTNDAITSAA  182 (330)
T ss_dssp             TEEEEECTTSEEEEECTT-SCE-EEEEECSSCCCSCCEECTTSC-EE-EECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred             CEEEEEecCCEEEEEcCC-CCE-EEEEcCCCceeeeeEEcCCCE-EE-EEcCCCEEEEECCC-CCEeEEEecCCCceeee
Confidence            345555555556666655 332 222222333344444444433 22 34445556666655 544444433 2223344


Q ss_pred             EEecCCCEEEEEEcCCeEEEEE
Q 004207          689 RFQPRLGRILAAAIENYISILD  710 (768)
Q Consensus       689 ~fsp~~~~llags~Dg~I~IwD  710 (768)
                      .+.+++. +++++  +.|..||
T Consensus       183 ~~d~~g~-l~v~t--~~l~~~d  201 (330)
T 3hxj_A          183 SIGKDGT-IYFGS--DKVYAIN  201 (330)
T ss_dssp             EECTTCC-EEEES--SSEEEEC
T ss_pred             EEcCCCE-EEEEe--CEEEEEC
Confidence            4444433 22322  4455555

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.28  E-value=3.8e-05  Score=90.71  Aligned_cols=150  Identities=13%  Similarity=0.116  Sum_probs=95.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC-CEEEEEEcC--CCCEEEEEeC------CCcEEEEECCCCCeeEEEe
Q 004207          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSP--SLSRLATSSA------DRTVRVWDTENPDYSLRTF  636 (768)
Q Consensus       566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~-~V~sl~fsp--dg~~LaTgs~------DgtIrVWDl~t~~~~~~~~  636 (768)
                      ++..|++++.|+.|+.+|.++++.+..+..... ....+..+|  .+..+++++.      +|.|+.||.++++. +-.+
T Consensus       116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~-~W~~  194 (668)
T 1kv9_A          116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKL-AWRF  194 (668)
T ss_dssp             EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE-EEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcE-EEEe
Confidence            356788888999999999999999987754211 000111111  1335555543      58999999999886 3222


Q ss_pred             ec---C----------------------------CCCeEEEEEeCCCCeEEEEEeCCC-------------------cEE
Q 004207          637 TG---H----------------------------STTVMSLDFHPSKEDLLCSCDNNS-------------------EIR  666 (768)
Q Consensus       637 ~~---h----------------------------~~~V~slafsp~g~~lLaSgs~Dg-------------------~I~  666 (768)
                      ..   .                            ......++++++.. +++.+..++                   .|.
T Consensus       195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~  273 (668)
T 1kv9_A          195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSIL  273 (668)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            21   0                            01112467888766 444565554                   499


Q ss_pred             EEECCCCeeEEEEecC----------CCeeEEEEecCCC---EEEEEEcCCeEEEEECCCceEe
Q 004207          667 YWSINNGSCAGVFKCQ----------SGATQMRFQPRLG---RILAAAIENYISILDVETQVCR  717 (768)
Q Consensus       667 iWDl~sg~~i~~~~~~----------~~i~sl~fsp~~~---~llags~Dg~I~IwD~~t~~~~  717 (768)
                      .+|.++|+.+..+...          .......+..++.   .+++++.+|.++++|..+++.+
T Consensus       274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence            9999999999888752          1222223334544   5778888999999998887654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.23  E-value=0.00054  Score=72.18  Aligned_cols=203  Identities=9%  Similarity=0.026  Sum_probs=119.5

Q ss_pred             eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC--cEE
Q 004207          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVR  622 (768)
Q Consensus       545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg--tIr  622 (768)
                      .+.+..+..+ ....+++|+++++++++...++.|..||.+. +....+. ....+.+|++.++++++++.....  .|.
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~   98 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVV   98 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence            3445555443 4588999999999777777889999999875 3333333 235689999999998666554332  466


Q ss_pred             EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee-EEEEe-------c---CCCeeEEEEe
Q 004207          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-------C---QSGATQMRFQ  691 (768)
Q Consensus       623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~-i~~~~-------~---~~~i~sl~fs  691 (768)
                      .+|..+++...............++..+. ..++++...++.|.++|...+.. +....       .   -.....+  +
T Consensus        99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s  175 (306)
T 2p4o_A           99 SLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K  175 (306)
T ss_dssp             EEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred             EEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence            67777666422111122233455555444 44565555688999999876532 21111       0   1123444  7


Q ss_pred             cCCCEEEEEE-cCCeEEEEECCC-ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          692 PRLGRILAAA-IENYISILDVET-QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       692 p~~~~llags-~Dg~I~IwD~~t-~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +++++++++. ..+.|.+||+.. +..    ...+++-       .    ......++++++|.++++....+.|.+||
T Consensus       176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~----~~~~~~~-------~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~  239 (306)
T 2p4o_A          176 RFGNFLYVSNTEKMLLLRIPVDSTDKP----GEPEIFV-------E----QTNIDDFAFDVEGNLYGATHIYNSVVRIA  239 (306)
T ss_dssp             EETTEEEEEETTTTEEEEEEBCTTSCB----CCCEEEE-------E----SCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             cCCCEEEEEeCCCCEEEEEEeCCCCCC----CccEEEe-------c----cCCCCCeEECCCCCEEEEeCCCCeEEEEC
Confidence            8887777666 467899999864 211    0011110       0    02345677777776655555556666654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.21  E-value=0.0017  Score=67.17  Aligned_cols=209  Identities=11%  Similarity=0.081  Sum_probs=135.3

Q ss_pred             EEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEecc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~~~~~tl~~-h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl  626 (768)
                      +.+.+-.+.+..++|+|+++ ++++...++.|...|.. ++.+..+.. -......|++.+++.++++.-.++.|.++++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            45667777899999999766 55567778899999998 888877742 2246889999998877777667788999988


Q ss_pred             CCCCe--eEEEee------cCCCCeEEEEEeCCCCeEEEEEeCCC-cEEEEEC-CCCeeEEEEec--------CCCeeEE
Q 004207          627 ENPDY--SLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNS-EIRYWSI-NNGSCAGVFKC--------QSGATQM  688 (768)
Q Consensus       627 ~t~~~--~~~~~~------~h~~~V~slafsp~g~~lLaSgs~Dg-~I~iWDl-~sg~~i~~~~~--------~~~i~sl  688 (768)
                      .....  .+....      ........|+|+|.+..+++++..+. .|+.|+- .....+..+..        -..+..+
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            65442  122221      13445789999999888887666554 5555551 11112222211        2357899


Q ss_pred             EEecCCCEEEEEEc-CCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          689 RFQPRLGRILAAAI-ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       689 ~fsp~~~~llags~-Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      +++|..+.+++.+. ...|.++|.... .      +..+.+..+..- +..--.....|+|.++|++.++ ++-..+++|
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~------~~~~~L~~g~~~-l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f  249 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLVGE-V------IGEMSLTKGSRG-LSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF  249 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTCC-E------EEEEECSTTGGG-CSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCCCC-E------EEEEEcCCccCC-cccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence            99999888777775 466788887654 2      233333322100 0001124578999999985544 776666655

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.14  E-value=0.00025  Score=76.48  Aligned_cols=191  Identities=13%  Similarity=0.160  Sum_probs=122.1

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC----CC---EEEEEeC---CCcEEEEECCCCCeeEEE
Q 004207          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LS---RLATSSA---DRTVRVWDTENPDYSLRT  635 (768)
Q Consensus       566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd----g~---~LaTgs~---DgtIrVWDl~t~~~~~~~  635 (768)
                      ...+++....++-+.|||+ +++.+..+..  +.++.|..-|+    ++   ++++...   +++|++|+++.....+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            3445666667788999999 7888888854  56777777663    22   2333333   579999977422222444


Q ss_pred             eec------CC-CCeEEEEE--eCC-CCeEEEEEeCCCcEEEEECC-------CCeeEEEEecCCCeeEEEEecCCCEEE
Q 004207          636 FTG------HS-TTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN-------NGSCAGVFKCQSGATQMRFQPRLGRIL  698 (768)
Q Consensus       636 ~~~------h~-~~V~slaf--sp~-g~~lLaSgs~Dg~I~iWDl~-------sg~~i~~~~~~~~i~sl~fsp~~~~ll  698 (768)
                      +..      .. ..+..+|+  ++. +..++++...+|.+..|++.       +.+.++.|...+.+..|.+.+..+.|+
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly  195 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY  195 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence            421      11 55777887  664 44456677788999999883       346788888888999999999999999


Q ss_pred             EEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEE--eCCCC-EEEEEE-CCCcEEEeC
Q 004207          699 AAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAA--STVNG-MVASAS-HDKCVKIWK  768 (768)
Q Consensus       699 ags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~--spdg~-~LaSgs-~DG~V~IWD  768 (768)
                      ++-.+..|..||.+..... ....+..+.        ...-...+..|++  .+++. ||++++ .+.++.|||
T Consensus       196 v~eEd~GIw~~da~p~~~~-~~~~v~~~~--------~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd  260 (355)
T 3amr_A          196 IAEEDEAIWKFSAEPDGGS-NGTVIDRAD--------GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD  260 (355)
T ss_dssp             EEETTTEEEEEECSTTSCS-CCEEEEEBS--------SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             EecccceEEEEeCCcCCCC-CceEEEEec--------CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence            9999988877875522100 000011111        0111235777777  44554 677666 466777775

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.12  E-value=0.00017  Score=75.20  Aligned_cols=128  Identities=11%  Similarity=-0.013  Sum_probs=89.3

Q ss_pred             CeEEEEeccCCC--CEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCeeEEEee-cCCCCeEEEEEeCCCCeEEEEEeC
Q 004207          587 FTVKSTLEEHTQ--WITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDN  661 (768)
Q Consensus       587 ~~~~~tl~~h~~--~V~sl~fspdg~~LaTgs~--DgtIrVWDl~t~~~~~~~~~-~h~~~V~slafsp~g~~lLaSgs~  661 (768)
                      .+.+.++. |..  ....+.|++++.++++.+.  ++.|+++|+.+++. +..+. +.......++++  ++.++++.-.
T Consensus         9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v-~~~i~l~~~~fgeGi~~~--g~~lyv~t~~   84 (266)
T 2iwa_A            9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV-ENIHKMDDSYFGEGLTLL--NEKLYQVVWL   84 (266)
T ss_dssp             EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred             ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE-EEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence            34556663 443  3689999998644444443  57999999999886 44432 222233456665  5678878878


Q ss_pred             CCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207          662 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK  719 (768)
Q Consensus       662 Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~  719 (768)
                      ++.|.++|..+.+.+..+... ......+++++..++++..++.|.++|..+.+....
T Consensus        85 ~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~  141 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKK  141 (266)
T ss_dssp             CSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEE
T ss_pred             CCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEE
Confidence            999999999999999998754 122344566788888877889999999998765543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.11  E-value=0.00019  Score=83.11  Aligned_cols=199  Identities=14%  Similarity=0.034  Sum_probs=119.7

Q ss_pred             CEEEEEeC------CCcEEEEECCCCeEEEEeccCCCC-------------------------------------E-EEE
Q 004207          568 KLLATGGH------DKKAVLWCTESFTVKSTLEEHTQW-------------------------------------I-TDV  603 (768)
Q Consensus       568 ~~LaSgs~------Dg~I~VWdl~t~~~~~tl~~h~~~-------------------------------------V-~sl  603 (768)
                      ..+++++.      ++.|+.+|.++++.+.++......                                     + ..+
T Consensus       161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~  240 (571)
T 2ad6_A          161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY  240 (571)
T ss_dssp             TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred             CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence            34555544      789999999999999876532110                                     0 135


Q ss_pred             EEcCCCCEEEEEeCC----------------CcEEEEECCCCCeeEEEee--cCC--------CCeEEEEEeCCCC--eE
Q 004207          604 RFSPSLSRLATSSAD----------------RTVRVWDTENPDYSLRTFT--GHS--------TTVMSLDFHPSKE--DL  655 (768)
Q Consensus       604 ~fspdg~~LaTgs~D----------------gtIrVWDl~t~~~~~~~~~--~h~--------~~V~slafsp~g~--~l  655 (768)
                      ++.++...++.+..+                +.|..+|.++++. +-.+.  .|.        .++ -+....+|+  .+
T Consensus       241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~-~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~  318 (571)
T 2ad6_A          241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA-KWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPL  318 (571)
T ss_dssp             EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE-EEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEE
T ss_pred             EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE-EEEecCCCCcccccccCCCCE-EEecccCCcEEEE
Confidence            566766677666532                3599999999885 33322  121        222 122234554  46


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEecCCC--------------e--------------------------eEEEEecCCC
Q 004207          656 LCSCDNNSEIRYWSINNGSCAGVFKCQSG--------------A--------------------------TQMRFQPRLG  695 (768)
Q Consensus       656 LaSgs~Dg~I~iWDl~sg~~i~~~~~~~~--------------i--------------------------~sl~fsp~~~  695 (768)
                      ++.++.+|.|+++|..+|+.+..+.....              +                          ..++|+|+.+
T Consensus       319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g  398 (571)
T 2ad6_A          319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR  398 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred             EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence            77888899999999999998877654321              0                          2367888888


Q ss_pred             EEEEEEcCCeEEEEECCCc----eE--------e--------eecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEE
Q 004207          696 RILAAAIENYISILDVETQ----VC--------R--------LKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV  755 (768)
Q Consensus       696 ~llags~Dg~I~IwD~~t~----~~--------~--------~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~L  755 (768)
                      .+++.+.+....++.....    ..        .        .....|..||..+++.+-...+...+.+..+...+.+|
T Consensus       399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v  478 (571)
T 2ad6_A          399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLV  478 (571)
T ss_dssp             EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEE
T ss_pred             EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEE
Confidence            8888776544333322110    00        0        01235677777777665322222333333333446778


Q ss_pred             EEEECCCcEEEeC
Q 004207          756 ASASHDKCVKIWK  768 (768)
Q Consensus       756 aSgs~DG~V~IWD  768 (768)
                      ++++.||.|++||
T Consensus       479 ~~g~~dg~l~a~D  491 (571)
T 2ad6_A          479 WYATLDGYLKALD  491 (571)
T ss_dssp             EEECTTSEEEEEE
T ss_pred             EEEcCCCeEEEEE
Confidence            8889999999886

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.08  E-value=0.00041  Score=77.31  Aligned_cols=154  Identities=12%  Similarity=0.139  Sum_probs=101.9

Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC-C----cEEEEECCCCC
Q 004207          557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R----TVRVWDTENPD  630 (768)
Q Consensus       557 ~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D-g----tIrVWDl~t~~  630 (768)
                      ....|+|+| ++..|+++...+.|+++|++++....... .......|+|++++++|+++... +    .+.+++.....
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            457899998 45566666555889999998766554443 44568899999999966666552 2    34444433221


Q ss_pred             eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEE-cCCeEE
Q 004207          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAA-IENYIS  707 (768)
Q Consensus       631 ~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags-~Dg~I~  707 (768)
                      .....+.. ......++++|++..++++-..++.|..||...+.....+..  ......++|+|++++|+++. ..+.|.
T Consensus       217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            11122222 234678899995555776776788999999987665333332  23467899999999666665 567888


Q ss_pred             EEECC
Q 004207          708 ILDVE  712 (768)
Q Consensus       708 IwD~~  712 (768)
                      .|+..
T Consensus       296 ~~~~d  300 (430)
T 3tc9_A          296 RSDYD  300 (430)
T ss_dssp             EEEEE
T ss_pred             EEeCC
Confidence            87654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.02  E-value=0.00016  Score=85.43  Aligned_cols=161  Identities=11%  Similarity=0.068  Sum_probs=112.0

Q ss_pred             EEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCeEEEEecc--CC-------CCEEEEEEcCCCC
Q 004207          559 ESCHFSPDGKLLATGGHDK-------------------KAVLWCTESFTVKSTLEE--HT-------QWITDVRFSPSLS  610 (768)
Q Consensus       559 ~sl~fSpdg~~LaSgs~Dg-------------------~I~VWdl~t~~~~~tl~~--h~-------~~V~sl~fspdg~  610 (768)
                      ..+++.++..+++.+..++                   .|..+|.++++.+..+..  |.       .++....+..+++
T Consensus       233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~  312 (668)
T 1kv9_A          233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK  312 (668)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence            4578888888888887766                   399999999999988754  22       2233233333554


Q ss_pred             ---EEEEEeCCCcEEEEECCCCCeeEEEeecC----------C-CC------------------------eEEEEEeCCC
Q 004207          611 ---RLATSSADRTVRVWDTENPDYSLRTFTGH----------S-TT------------------------VMSLDFHPSK  652 (768)
Q Consensus       611 ---~LaTgs~DgtIrVWDl~t~~~~~~~~~~h----------~-~~------------------------V~slafsp~g  652 (768)
                         .|++++.+|.|+++|.++++.....-...          . .+                        -..++++|+.
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~  392 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT  392 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence               68899999999999999988632111000          0 00                        0126777776


Q ss_pred             CeEEEEE-----------------------------------eCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEE
Q 004207          653 EDLLCSC-----------------------------------DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI  697 (768)
Q Consensus       653 ~~lLaSg-----------------------------------s~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~l  697 (768)
                      ..+++..                                   ..+|.|..||+.+++.+..+..........+...++.+
T Consensus       393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v  472 (668)
T 1kv9_A          393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLV  472 (668)
T ss_dssp             TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEE
T ss_pred             CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEE
Confidence            6544321                                   12478999999999999888776655555566678899


Q ss_pred             EEEEcCCeEEEEECCCceEeee
Q 004207          698 LAAAIENYISILDVETQVCRLK  719 (768)
Q Consensus       698 lags~Dg~I~IwD~~t~~~~~~  719 (768)
                      ++++.|+.|++||.++++....
T Consensus       473 f~g~~dg~l~a~d~~tG~~l~~  494 (668)
T 1kv9_A          473 FQGTAAGQMHAYSADKGEALWQ  494 (668)
T ss_dssp             EEECTTSEEEEEETTTCCEEEE
T ss_pred             EEECCcccchhhhhhcChhheE
Confidence            9999999999999999876543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.02  E-value=0.00095  Score=73.17  Aligned_cols=158  Identities=8%  Similarity=0.001  Sum_probs=106.6

Q ss_pred             CCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCCee
Q 004207          555 TSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYS  632 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~La-Sgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~-LaTgs~DgtIrVWDl~t~~~~  632 (768)
                      ...+..++|++.+..|+ +-...+.|..+++........+.........|++.+.+.. +++-...+.|.+.+++.... 
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-  193 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-  193 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-
Confidence            34588999998655544 5456788999998876554444333345678889875444 45555567898888875432 


Q ss_pred             EEEeecCCCCeEEEEEeCCCCeEEEEEeCC-CcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEc-CCeEEEE
Q 004207          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-ENYISIL  709 (768)
Q Consensus       633 ~~~~~~h~~~V~slafsp~g~~lLaSgs~D-g~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~-Dg~I~Iw  709 (768)
                      ...+.........|+++|.+..++++-..+ +.|..+++........... -.....++|+|+++.|+.+.. .+.|..+
T Consensus       194 ~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~  273 (386)
T 3v65_B          194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA  273 (386)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence            233333345689999999888788776655 7899999874333332222 234678999988888877764 5678888


Q ss_pred             ECCC
Q 004207          710 DVET  713 (768)
Q Consensus       710 D~~t  713 (768)
                      |+..
T Consensus       274 d~dG  277 (386)
T 3v65_B          274 NLDG  277 (386)
T ss_dssp             CTTS
T ss_pred             eCCC
Confidence            8764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.02  E-value=0.0015  Score=70.44  Aligned_cols=156  Identities=8%  Similarity=0.011  Sum_probs=106.9

Q ss_pred             CCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCeeE
Q 004207          556 SKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSL  633 (768)
Q Consensus       556 ~~I~sl~fSpdg~~La-Sgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~-~LaTgs~DgtIrVWDl~t~~~~~  633 (768)
                      ..+..++|++....|+ +-...+.|..+++........+.........+++.+.+. ++++-...+.|.+.+++.... .
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~  151 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-K  151 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-E
Confidence            4488999998665555 445678899999887654444433334567899987544 445555678999999875432 2


Q ss_pred             EEeecCCCCeEEEEEeCCCCeEEEEEeCC-CcEEEEECCCCeeEEEE-e-cCCCeeEEEEecCCCEEEEEEc-CCeEEEE
Q 004207          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVF-K-CQSGATQMRFQPRLGRILAAAI-ENYISIL  709 (768)
Q Consensus       634 ~~~~~h~~~V~slafsp~g~~lLaSgs~D-g~I~iWDl~sg~~i~~~-~-~~~~i~sl~fsp~~~~llags~-Dg~I~Iw  709 (768)
                      ..+.........|+++|.+..++++-..+ +.|..+++.... ...+ . .-.....++++|+++.|+.+.. .+.|..+
T Consensus       152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~  230 (349)
T 3v64_C          152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA  230 (349)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence            33333445678999999878788776666 889999987432 2322 2 1234678999998888877764 5678888


Q ss_pred             ECCC
Q 004207          710 DVET  713 (768)
Q Consensus       710 D~~t  713 (768)
                      |+..
T Consensus       231 ~~dG  234 (349)
T 3v64_C          231 NLDG  234 (349)
T ss_dssp             ETTS
T ss_pred             eCCC
Confidence            8765

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.00  E-value=0.0041  Score=65.96  Aligned_cols=157  Identities=13%  Similarity=0.029  Sum_probs=103.3

Q ss_pred             CCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCC----CeEEEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCC
Q 004207          555 TSKVESCHFSPDGKLLA-TGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN  628 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~La-Sgs~Dg~I~VWdl~t----~~~~~tl~~h~~~V~sl~fspdg~~L-aTgs~DgtIrVWDl~t  628 (768)
                      -..+.+++|++++..|+ +-..++.|..+++.+    ......+...-.....+++++.+..| ++-...+.|.++|++.
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            34578999998665554 445568899999876    22222333222456789998754444 5556678999999875


Q ss_pred             CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-CcEEEEECCCCeeEEEEe--cCCCeeEEEEecCCCEEEEEEc-CC
Q 004207          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAI-EN  704 (768)
Q Consensus       629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-g~I~iWDl~sg~~i~~~~--~~~~i~sl~fsp~~~~llags~-Dg  704 (768)
                      ... .............++++|.+..++++.... +.|..+++. ++....+.  .-.....++++++++.|+.+.. .+
T Consensus       109 ~~~-~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~  186 (316)
T 1ijq_A          109 VKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  186 (316)
T ss_dssp             SSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             Cce-EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCC
Confidence            432 223333345688999999878777766544 788888886 44333332  2345678999998888887774 56


Q ss_pred             eEEEEECCC
Q 004207          705 YISILDVET  713 (768)
Q Consensus       705 ~I~IwD~~t  713 (768)
                      .|..+|+..
T Consensus       187 ~I~~~d~dg  195 (316)
T 1ijq_A          187 SISSIDVNG  195 (316)
T ss_dssp             EEEEEETTS
T ss_pred             eEEEEecCC
Confidence            899998865

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.96  E-value=0.00019  Score=85.92  Aligned_cols=152  Identities=9%  Similarity=0.061  Sum_probs=94.4

Q ss_pred             CeEEEEEc-CCCCEEEEEeC-CC----cEEEEECCCC-eEEE-EeccCCCCEEEEEEcCCCCEEEEEeCC-----CcEEE
Q 004207          557 KVESCHFS-PDGKLLATGGH-DK----KAVLWCTESF-TVKS-TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRV  623 (768)
Q Consensus       557 ~I~sl~fS-pdg~~LaSgs~-Dg----~I~VWdl~t~-~~~~-tl~~h~~~V~sl~fspdg~~LaTgs~D-----gtIrV  623 (768)
                      .+...+|| |||++||.+.. +|    .|+++|+.++ +.+. .+.   .....++|+||++.|+....|     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57889999 99998875533 33    4999999988 6321 111   113468899999888777765     25888


Q ss_pred             EECCCCCee-EEEee-cCCCCeEEEEEeCCCCeEEEEEeC--CCcEEEEECCCC--ee-EEEEe-c-CCCeeEEEEecCC
Q 004207          624 WDTENPDYS-LRTFT-GHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNG--SC-AGVFK-C-QSGATQMRFQPRL  694 (768)
Q Consensus       624 WDl~t~~~~-~~~~~-~h~~~V~slafsp~g~~lLaSgs~--Dg~I~iWDl~sg--~~-i~~~~-~-~~~i~sl~fsp~~  694 (768)
                      +++.++... ...+. ........+.|+|+|+.++++...  ...|+++|+.++  .. +..+. . ......+.|+. +
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g  330 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T  330 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence            888775421 22222 233456788999999988876643  346888899875  22 02222 1 22334444443 5


Q ss_pred             CEEEEEEcCC-----eEEEEECC
Q 004207          695 GRILAAAIEN-----YISILDVE  712 (768)
Q Consensus       695 ~~llags~Dg-----~I~IwD~~  712 (768)
                      +.|+..+..+     .|.++|+.
T Consensus       331 ~~l~~~t~~~~a~~~~L~~~d~~  353 (751)
T 2xe4_A          331 SHLVILTNEGGAVNHKLLIAPRG  353 (751)
T ss_dssp             TEEEEEECTTTCTTCEEEEEETT
T ss_pred             CEEEEEeCCCCCCCcEEEEEcCC
Confidence            6666555432     45555654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.95  E-value=0.0042  Score=65.91  Aligned_cols=137  Identities=7%  Similarity=-0.023  Sum_probs=91.9

Q ss_pred             CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCC---CeeEEEeecCCCCeEEEEEeCC
Q 004207          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPS  651 (768)
Q Consensus       576 Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaT-gs~DgtIrVWDl~t~---~~~~~~~~~h~~~V~slafsp~  651 (768)
                      ...|+..|+.+.+....+. ....+..++|++.+..|+. -..++.|..++++..   ......+...-.....|++++.
T Consensus         9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~   87 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI   87 (316)
T ss_dssp             BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence            3569999998876655554 3456889999987555554 455689999998751   2212223223345688999987


Q ss_pred             CCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcC--CeEEEEECCC
Q 004207          652 KEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDVET  713 (768)
Q Consensus       652 g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~D--g~I~IwD~~t  713 (768)
                      +..++++-..++.|.++|+........+. .......++++|.+++++.+...  +.|..+++..
T Consensus        88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG  152 (316)
T 1ijq_A           88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (316)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence            77788777778899999987544333333 23567889999988888777653  5787777754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.94  E-value=0.0078  Score=72.01  Aligned_cols=206  Identities=8%  Similarity=0.058  Sum_probs=132.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc-------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~-------h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~  627 (768)
                      ...|.++...++|.+.+ |+.+ -|.+||..+++.......       ....|.++...++|. |..|+.++-|.+|+..
T Consensus       262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~  338 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI  338 (795)
T ss_dssp             CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred             CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence            35699999988887554 4444 589999887765543211       235699999998876 5567777789999876


Q ss_pred             CCCeeEEEee-----cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe---------cCCCeeEEEEecC
Q 004207          628 NPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------CQSGATQMRFQPR  693 (768)
Q Consensus       628 t~~~~~~~~~-----~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~---------~~~~i~sl~fsp~  693 (768)
                      +.........     -....|.++...++|. +. .|+.++-|.+||..++.......         ....|.+++..++
T Consensus       339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~  416 (795)
T 4a2l_A          339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEK  416 (795)
T ss_dssp             GGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETT
T ss_pred             cccceEEcCCCCCCCCCCCeeEEEEECCCCC-EE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCC
Confidence            5443111110     0235699999888876 33 46767789999988766543321         1245788888887


Q ss_pred             CCEEEEEEcCCeEEEEECCCceEeeec---------------------------ceeEEeecCCCceEEecc-------C
Q 004207          694 LGRILAAAIENYISILDVETQVCRLKL---------------------------QTLELWNMTENKTLTLSA-------H  739 (768)
Q Consensus       694 ~~~llags~Dg~I~IwD~~t~~~~~~~---------------------------~~I~iwd~~~~~~~~l~~-------H  739 (768)
                      +..|.+|+.++.|.+||..++......                           ..+.+||..++....+..       +
T Consensus       417 g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~  496 (795)
T 4a2l_A          417 KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVV  496 (795)
T ss_dssp             TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCC
T ss_pred             CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccC
Confidence            664778888788999998765332110                           134455555554433321       2


Q ss_pred             CCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          740 DKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       740 ~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      ...|.++...+++.+.+.. .+| |.+|
T Consensus       497 ~~~i~~i~~d~~g~lWigt-~~G-l~~~  522 (795)
T 4a2l_A          497 SKQITTLFRDSHKRLWIGG-EEG-LSVF  522 (795)
T ss_dssp             CCCEEEEEECTTCCEEEEE-SSC-EEEE
T ss_pred             CceEEEEEECCCCCEEEEe-CCc-eEEE
Confidence            3568899988888765544 444 4444

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.93  E-value=0.0019  Score=74.84  Aligned_cols=199  Identities=12%  Similarity=0.058  Sum_probs=116.3

Q ss_pred             EEEEEe------CCCcEEEEECCCCeEEEEeccCCCCE-----------------------------------------E
Q 004207          569 LLATGG------HDKKAVLWCTESFTVKSTLEEHTQWI-----------------------------------------T  601 (768)
Q Consensus       569 ~LaSgs------~Dg~I~VWdl~t~~~~~tl~~h~~~V-----------------------------------------~  601 (768)
                      .|++++      .++.|+.+|..+++.+.........+                                         .
T Consensus       170 ~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~  249 (582)
T 1flg_A          170 LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQ  249 (582)
T ss_dssp             EEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCS
T ss_pred             EEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccC
Confidence            555554      37899999999999887654321100                                         1


Q ss_pred             EEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCCeeEEEee-cCC--------CCeEEEEE
Q 004207          602 DVRFSPSLSRLATSSA--------------------D----RTVRVWDTENPDYSLRTFT-GHS--------TTVMSLDF  648 (768)
Q Consensus       602 sl~fspdg~~LaTgs~--------------------D----gtIrVWDl~t~~~~~~~~~-~h~--------~~V~slaf  648 (768)
                      .++++|+..+++.+..                    |    +.|..+|.++++..-..-. .|.        .++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            2456666677776653                    2    5899999999886332222 221        1221 222


Q ss_pred             e-CCCC--eEEEEEeCCCcEEEEECCCCeeEEEEecCCCe----------------------------------------
Q 004207          649 H-PSKE--DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA----------------------------------------  685 (768)
Q Consensus       649 s-p~g~--~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i----------------------------------------  685 (768)
                      . .+|+  .+++.++.+|.|+++|.++|+.+..+.....+                                        
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~  408 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF  408 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence            2 3554  46778999999999999999988776543210                                        


Q ss_pred             ------eEEEEecCCCEEEEEEcCCeEEEEECCC----ceE------------eeecceeEEeecCCCceEEeccCCCCe
Q 004207          686 ------TQMRFQPRLGRILAAAIENYISILDVET----QVC------------RLKLQTLELWNMTENKTLTLSAHDKLV  743 (768)
Q Consensus       686 ------~sl~fsp~~~~llags~Dg~I~IwD~~t----~~~------------~~~~~~I~iwd~~~~~~~~l~~H~~~I  743 (768)
                            ..++++|+.+.+++...+-.+.++....    +..            ......|..||+.+++.+-...+...+
T Consensus       409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~  488 (582)
T 1flg_A          409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL  488 (582)
T ss_dssp             TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC
T ss_pred             ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC
Confidence                  1346677767777766543333332111    000            001235777787777765222222222


Q ss_pred             eEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          744 SSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       744 ~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ..-.....+.+|++++.||.|+.||
T Consensus       489 ~~g~~~tagglvf~g~~dg~l~A~D  513 (582)
T 1flg_A          489 WAGVLATAGNLVFTGTGDGYFKAFD  513 (582)
T ss_dssp             CSCCEEETTTEEEEECTTSEEEEEE
T ss_pred             cccceEeCCCEEEEECCCCcEEEEE
Confidence            2212223467888899999999886

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.92  E-value=0.00036  Score=72.39  Aligned_cols=125  Identities=9%  Similarity=0.001  Sum_probs=88.7

Q ss_pred             eEEEEeccCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcE
Q 004207          588 TVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (768)
Q Consensus       588 ~~~~tl~~h~--~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I  665 (768)
                      +++.++. |.  .....+.|+. +.++++.+.+|.|+++|+++++..... ....-....+++  +++.++++.-.++.+
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~--~g~~Ly~ltw~~~~v  118 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS--DGERLYQLTWTEGLL  118 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE--CSSCEEEEESSSCEE
T ss_pred             EEEEEEc-CCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE--eCCEEEEEEccCCEE
Confidence            4455552 43  3356888873 567777788889999999998864444 322212233554  456677777789999


Q ss_pred             EEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207          666 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK  719 (768)
Q Consensus       666 ~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~  719 (768)
                      .+||..+.+.+.++.....-..++  +++..|+.+..++.|.++|..+.+....
T Consensus       119 ~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~  170 (268)
T 3nok_A          119 FTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGA  170 (268)
T ss_dssp             EEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEE
T ss_pred             EEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEE
Confidence            999999999999998754444454  4567888887899999999999776544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.90  E-value=0.00082  Score=78.18  Aligned_cols=193  Identities=9%  Similarity=-0.004  Sum_probs=116.8

Q ss_pred             CCCcEEEEECCCCeEEEEeccCCCC-------------------------------------E-EEEEEcCCCCEEEEEe
Q 004207          575 HDKKAVLWCTESFTVKSTLEEHTQW-------------------------------------I-TDVRFSPSLSRLATSS  616 (768)
Q Consensus       575 ~Dg~I~VWdl~t~~~~~tl~~h~~~-------------------------------------V-~sl~fspdg~~LaTgs  616 (768)
                      .++.|+.+|.++++.+..+......                                     + ..+++.++..+++.+.
T Consensus       180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~  259 (599)
T 1w6s_A          180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT  259 (599)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence            3799999999999998877532111                                     0 1345666777777776


Q ss_pred             CC----------------CcEEEEECCCCCeeEEEeec-CC--------CCeEEEEEe-CCCC--eEEEEEeCCCcEEEE
Q 004207          617 AD----------------RTVRVWDTENPDYSLRTFTG-HS--------TTVMSLDFH-PSKE--DLLCSCDNNSEIRYW  668 (768)
Q Consensus       617 ~D----------------gtIrVWDl~t~~~~~~~~~~-h~--------~~V~slafs-p~g~--~lLaSgs~Dg~I~iW  668 (768)
                      .+                +.|..+|.++++..-..-.. |.        .++. +... .+|+  .+++.++.+|.|+++
T Consensus       260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~l  338 (599)
T 1w6s_A          260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTL  338 (599)
T ss_dssp             CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred             CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEE
Confidence            65                37999999998863222222 21        1121 2332 4553  567788899999999


Q ss_pred             ECCCCeeEEEEecCC----------------------------------------CeeEEEEecCCCEEEEEEcCCeEEE
Q 004207          669 SINNGSCAGVFKCQS----------------------------------------GATQMRFQPRLGRILAAAIENYISI  708 (768)
Q Consensus       669 Dl~sg~~i~~~~~~~----------------------------------------~i~sl~fsp~~~~llags~Dg~I~I  708 (768)
                      |.++|+.+.......                                        ....++|+|+.+.+++...+-...+
T Consensus       339 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~  418 (599)
T 1w6s_A          339 DRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDW  418 (599)
T ss_dssp             ETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred             ECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceee
Confidence            999999887665321                                        0124678898888888765533322


Q ss_pred             EECCC----ce--------Ee----e------ecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207          709 LDVET----QV--------CR----L------KLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  766 (768)
Q Consensus       709 wD~~t----~~--------~~----~------~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~I  766 (768)
                      .-.+.    +.        ..    .      ....|..||+.+++++-...+...+..-.....+.+|+.++.||.|+.
T Consensus       419 ~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A  498 (599)
T 1w6s_A          419 EPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKA  498 (599)
T ss_dssp             EECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEE
T ss_pred             ecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEE
Confidence            21100    00        00    0      123677888888877633222222222122334678888999999998


Q ss_pred             eC
Q 004207          767 WK  768 (768)
Q Consensus       767 WD  768 (768)
                      ||
T Consensus       499 ~D  500 (599)
T 1w6s_A          499 RD  500 (599)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.90  E-value=0.0056  Score=67.38  Aligned_cols=160  Identities=12%  Similarity=-0.000  Sum_probs=106.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCC----eEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 004207          554 STSKVESCHFSPDGKLLATG-GHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE  627 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSg-s~Dg~I~VWdl~t~----~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~  627 (768)
                      .-..+..|+|++.+..|+.+ ...+.|+.+++...    .....+.........|++.+. ++++++-...+.|.+.+++
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            34568899999866655544 45678999988752    233333334456789999884 4455555567899999988


Q ss_pred             CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeC-CCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEc-CC
Q 004207          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-EN  704 (768)
Q Consensus       628 t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~-Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~-Dg  704 (768)
                      .... ...+.........|+++|.+..++++-.. .+.|...++........+.. -.....|+++++++.|+.+.. .+
T Consensus       190 g~~~-~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~  268 (400)
T 3p5b_L          190 GVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  268 (400)
T ss_dssp             TCSE-EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCce-EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC
Confidence            6443 33333344568899999987777766533 47899999874333333322 245788999998888888764 56


Q ss_pred             eEEEEECCCc
Q 004207          705 YISILDVETQ  714 (768)
Q Consensus       705 ~I~IwD~~t~  714 (768)
                      .|..+|+...
T Consensus       269 ~I~~~d~dG~  278 (400)
T 3p5b_L          269 SISSIDVNGG  278 (400)
T ss_dssp             EEEEEETTSC
T ss_pred             EEEEEeCCCC
Confidence            7888888653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.88  E-value=0.0092  Score=71.37  Aligned_cols=150  Identities=8%  Similarity=-0.010  Sum_probs=101.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec----cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~----~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~  630 (768)
                      ...|.+++..+++.+|.+|+.++-|.+||..+++......    .+...|.++...+++.+.+.. .+ .|.+||..++.
T Consensus       405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~  482 (795)
T 4a2l_A          405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRS  482 (795)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTE
T ss_pred             CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCe
Confidence            3569999998888856677777789999998876554322    234579999998888755544 44 58899988754


Q ss_pred             eeEEEeec-------CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--------cCCCeeEEEEecCCC
Q 004207          631 YSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------CQSGATQMRFQPRLG  695 (768)
Q Consensus       631 ~~~~~~~~-------h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~--------~~~~i~sl~fsp~~~  695 (768)
                      .  ..+..       ....|.++...+++...+  |+. +.|.+||..++..  .+.        ....|.++...+++.
T Consensus       483 ~--~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi--gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~  555 (795)
T 4a2l_A          483 F--TTIEKEKDGTPVVSKQITTLFRDSHKRLWI--GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGI  555 (795)
T ss_dssp             E--EECCBCTTCCBCCCCCEEEEEECTTCCEEE--EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSC
T ss_pred             E--EEccccccccccCCceEEEEEECCCCCEEE--EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCC
Confidence            3  22221       235789999988876444  333 4688899877765  222        124578888888765


Q ss_pred             EEEEEEcCCeEEEEECCCce
Q 004207          696 RILAAAIENYISILDVETQV  715 (768)
Q Consensus       696 ~llags~Dg~I~IwD~~t~~  715 (768)
                       +.+++.. .|..||..+..
T Consensus       556 -lWigT~~-Gl~~~d~~~~~  573 (795)
T 4a2l_A          556 -IWVGTRE-GFYCFNEKDKQ  573 (795)
T ss_dssp             -EEEEESS-CEEEEETTTTE
T ss_pred             -EEEEeCC-CceeECCCCCc
Confidence             4555554 67888876654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.86  E-value=0.0043  Score=66.87  Aligned_cols=153  Identities=8%  Similarity=0.003  Sum_probs=100.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCeeEEE
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRT  635 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTg-s~DgtIrVWDl~t~~~~~~~  635 (768)
                      ..+|.+..++. +|+.+ ....|+..++........+.. ...+..++|++....|+.+ ...+.|+.++++.... ...
T Consensus        35 ~~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~  110 (349)
T 3v64_C           35 RRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEV  110 (349)
T ss_dssp             SSCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE
T ss_pred             CCcccccccCc-eeEee-cccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-eEE
Confidence            34566655533 44443 345688888877655544443 3458899999865555544 4678899999986553 222


Q ss_pred             eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcC--CeEEEEECC
Q 004207          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILDVE  712 (768)
Q Consensus       636 ~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~D--g~I~IwD~~  712 (768)
                      ..........+++++.+..++++-...+.|.++++........+.. ......++++|.++.|+.+...  +.|..+++.
T Consensus       111 ~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d  190 (349)
T 3v64_C          111 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  190 (349)
T ss_dssp             ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC
Confidence            3323345678999987777887877788999999875443333322 3457889999988887777643  667777765


Q ss_pred             C
Q 004207          713 T  713 (768)
Q Consensus       713 t  713 (768)
                      .
T Consensus       191 G  191 (349)
T 3v64_C          191 G  191 (349)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.86  E-value=0.00048  Score=71.32  Aligned_cols=126  Identities=11%  Similarity=0.075  Sum_probs=87.7

Q ss_pred             eEEEEeccCCC--CEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC
Q 004207          588 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (768)
Q Consensus       588 ~~~~tl~~h~~--~V~sl~fspdg~~LaTgs~Dg--tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg  663 (768)
                      +++.++ .|..  ....+.|+ ++.++.+.+.+|  .|+++|+++++. +..+.-. ..+......++++.++++.-.++
T Consensus        32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv-~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~  107 (262)
T 3nol_A           32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT-LQQIELG-KRYFGEGISDWKDKIVGLTWKNG  107 (262)
T ss_dssp             EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE-EEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred             EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcE-EEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence            455566 3443  35788898 666667777766  899999999886 3333322 23333323334567777777799


Q ss_pred             cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207          664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK  719 (768)
Q Consensus       664 ~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~  719 (768)
                      .+.+||..+.+.+.++.....-..++  +++..|+.+..++.|.++|..+.+....
T Consensus       108 ~v~v~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~  161 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRT  161 (262)
T ss_dssp             EEEEEETTTCCEEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEE
T ss_pred             EEEEEECccCcEEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEE
Confidence            99999999999999998754333444  5667777777788899999998766544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.77  E-value=0.0011  Score=76.51  Aligned_cols=158  Identities=14%  Similarity=0.104  Sum_probs=105.5

Q ss_pred             EEEEcCCCCEEEEEeCC----------------CcEEEEECCCCeEEEEecc--CC--------CCEEEEEEcCCCC---
Q 004207          560 SCHFSPDGKLLATGGHD----------------KKAVLWCTESFTVKSTLEE--HT--------QWITDVRFSPSLS---  610 (768)
Q Consensus       560 sl~fSpdg~~LaSgs~D----------------g~I~VWdl~t~~~~~tl~~--h~--------~~V~sl~fspdg~---  610 (768)
                      .+++.++...|+.+..+                +.|..+|.++++.+..+..  |.        .++. +....+++   
T Consensus       239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~  317 (571)
T 2ad6_A          239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTP  317 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEE
T ss_pred             eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEE
Confidence            35666766666666532                3599999999999887753  21        2221 22224663   


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEeecC------------CCCe--------------------------EEEEEeCCC
Q 004207          611 RLATSSADRTVRVWDTENPDYSLRTFTGH------------STTV--------------------------MSLDFHPSK  652 (768)
Q Consensus       611 ~LaTgs~DgtIrVWDl~t~~~~~~~~~~h------------~~~V--------------------------~slafsp~g  652 (768)
                      .++.++.+|.|+++|.++++..-..-...            ..++                          ..++++|+.
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  397 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence            57788899999999999987532222111            0111                          235778877


Q ss_pred             CeEEEEEe------------------------------------CCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCE
Q 004207          653 EDLLCSCD------------------------------------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR  696 (768)
Q Consensus       653 ~~lLaSgs------------------------------------~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~  696 (768)
                      ..+++.+.                                    .++.|..||+.+++.+..+.....+....+...++.
T Consensus       398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~  477 (571)
T 2ad6_A          398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGL  477 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTE
T ss_pred             CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCE
Confidence            65554432                                    357899999999999888876555444444445678


Q ss_pred             EEEEEcCCeEEEEECCCceEee
Q 004207          697 ILAAAIENYISILDVETQVCRL  718 (768)
Q Consensus       697 llags~Dg~I~IwD~~t~~~~~  718 (768)
                      +++++.|+.|+.||.++++...
T Consensus       478 v~~g~~dg~l~a~D~~tG~~lw  499 (571)
T 2ad6_A          478 VWYATLDGYLKALDNKDGKELW  499 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEE
T ss_pred             EEEEcCCCeEEEEECCCCCEEE
Confidence            8889999999999999987653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.74  E-value=0.002  Score=75.55  Aligned_cols=76  Identities=12%  Similarity=0.113  Sum_probs=50.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCCC-CEEEEEEcCCCCEEEEEe-CC-----CcEEEEEC
Q 004207          555 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSS-AD-----RTVRVWDT  626 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~-Dg~I~VWdl~t~~~~~tl~~h~~-~V~sl~fspdg~~LaTgs-~D-----gtIrVWDl  626 (768)
                      .....++++..+++++++|+. +..+.+||..+.+-...-..+.. .-.++++.+++++++.|+ .+     ..+.+||.
T Consensus       242 ~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~  321 (656)
T 1k3i_A          242 DMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP  321 (656)
T ss_dssp             CCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             CCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence            334456778889999999884 45799999887653322111111 123455667889998888 44     46899998


Q ss_pred             CCCC
Q 004207          627 ENPD  630 (768)
Q Consensus       627 ~t~~  630 (768)
                      .+..
T Consensus       322 ~t~~  325 (656)
T 1k3i_A          322 SSKT  325 (656)
T ss_dssp             TTTE
T ss_pred             CCCc
Confidence            7654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.73  E-value=0.0057  Score=66.91  Aligned_cols=152  Identities=8%  Similarity=-0.001  Sum_probs=99.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCeeEEEe
Q 004207          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTF  636 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~La-Tgs~DgtIrVWDl~t~~~~~~~~  636 (768)
                      .+|.+..+ ..+|+.+ ....|+.+++........+.. ...+..++|++....|+ +-...+.|+.++++.... ...+
T Consensus        79 ~~C~~~~~-~~~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~  154 (386)
T 3v65_B           79 RSCKALGP-EPVLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV  154 (386)
T ss_dssp             SCEEECSS-CCEEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEE
T ss_pred             CeECCccc-cceeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEE
Confidence            34555544 3344444 345788899887665544443 34588999998655554 445677899999986543 2333


Q ss_pred             ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcC--CeEEEEECCC
Q 004207          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILDVET  713 (768)
Q Consensus       637 ~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~D--g~I~IwD~~t  713 (768)
                      .........|++++.+..++++-...+.|.++++........+.. ......++++|.+++|+.+...  +.|..+++..
T Consensus       155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG  234 (386)
T 3v65_B          155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  234 (386)
T ss_dssp             CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence            323345678899987777887877788999999875443333332 3457889999988888777643  5677777654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.73  E-value=0.0032  Score=70.19  Aligned_cols=117  Identities=10%  Similarity=0.133  Sum_probs=71.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC---Cc-EEEEECCCCeE-EEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004207          554 STSKVESCHFSPDGKLLATGGHD---KK-AVLWCTESFTV-KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTE  627 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~D---g~-I~VWdl~t~~~-~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~  627 (768)
                      ......+|+|+++|+++++....   .. +..++...... ...+. .......++++| ++.++++-..++.|+.+|..
T Consensus       180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~  258 (433)
T 4hw6_A          180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA  258 (433)
T ss_dssp             CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred             CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence            44568999999999944444321   12 33333222111 11121 223456788999 66666666667889999998


Q ss_pred             CCCeeEEEee-cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC
Q 004207          628 NPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (768)
Q Consensus       628 t~~~~~~~~~-~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~  671 (768)
                      ++......+. +.......|+|+|+++.++++-...+.|+.+|..
T Consensus       259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            6654122222 1222345799999998788777778899998865

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.71  E-value=0.0024  Score=65.41  Aligned_cols=125  Identities=12%  Similarity=0.029  Sum_probs=87.6

Q ss_pred             eEEEEeccCC--CCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCeeEEEeecCCC-CeEEEEEeCCCCeEEEEEeCC
Q 004207          588 TVKSTLEEHT--QWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDLLCSCDNN  662 (768)
Q Consensus       588 ~~~~tl~~h~--~~V~sl~fspdg~~LaTgs~Dg--tIrVWDl~t~~~~~~~~~~h~~-~V~slafsp~g~~lLaSgs~D  662 (768)
                      +++.++ .|.  .....+.|+. +.++.+.+.+|  .|+++|+.+++. +....-... .-..+++.  ++.++...-.+
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv-~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~   84 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI-LQRAEVPPPYFGAGIVAW--RDRLIQLTWRN   84 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE--TTEEEEEESSS
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCE-EEEEeCCCCcceeEEEEe--CCEEEEEEeeC
Confidence            455565 354  3466899986 45566666654  899999999886 443332211 22334444  56777777789


Q ss_pred             CcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207          663 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK  719 (768)
Q Consensus       663 g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~  719 (768)
                      +.+.+||..+.+.+.++.....-..++  +++..|+++..++.|.++|..+.+....
T Consensus        85 ~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~  139 (243)
T 3mbr_X           85 HEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGS  139 (243)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEE
T ss_pred             CEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEE
Confidence            999999999999999998755444444  5567788877889999999999776544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.65  E-value=0.00022  Score=83.72  Aligned_cols=115  Identities=9%  Similarity=0.114  Sum_probs=73.2

Q ss_pred             EEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCeE--EEEe-ccCCCCEEEEEEcCCCCEEEEEeC-CCcEEE
Q 004207          560 SCHFSP-DGKLLATGGHDK-----------KAVLWCTESFTV--KSTL-EEHTQWITDVRFSPSLSRLATSSA-DRTVRV  623 (768)
Q Consensus       560 sl~fSp-dg~~LaSgs~Dg-----------~I~VWdl~t~~~--~~tl-~~h~~~V~sl~fspdg~~LaTgs~-DgtIrV  623 (768)
                      ++++.+ ++++++.|+.+.           .+.+||..+++-  +..+ ..+.....++++..+++++++|+. +..+++
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556677 888888887643           588999887653  2222 223333446788889999999985 458999


Q ss_pred             EECCCCCeeEEEeecCC-CCeEEEEEeCCCCeEEEEEe-CC-----CcEEEEECCCCeeE
Q 004207          624 WDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCD-NN-----SEIRYWSINNGSCA  676 (768)
Q Consensus       624 WDl~t~~~~~~~~~~h~-~~V~slafsp~g~~lLaSgs-~D-----g~I~iWDl~sg~~i  676 (768)
                      ||..+...... -..+. ..-.++++.++++ +++.|+ .+     ..+.+||..+.+..
T Consensus       270 yd~~t~~W~~~-~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          270 YDSSSDSWIPG-PDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             EEGGGTEEEEC-CCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             ecCcCCceeEC-CCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcce
Confidence            99987653211 11111 1223455666766 666666 34     56999999877643

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.64  E-value=0.012  Score=60.69  Aligned_cols=154  Identities=10%  Similarity=0.115  Sum_probs=107.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEec------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLE------EHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~---~~tl~------~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl  626 (768)
                      .....|++.+++.++++.-.++.+.++++.....   +....      ..+.....|+|+|.+..|+++.......||.+
T Consensus        70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~  149 (255)
T 3qqz_A           70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV  149 (255)
T ss_dssp             SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred             CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence            4578888988888777766778899998765432   22221      13445789999999877777776655555555


Q ss_pred             CC--CCeeEEEee-------cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC----------CeeE
Q 004207          627 EN--PDYSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS----------GATQ  687 (768)
Q Consensus       627 ~t--~~~~~~~~~-------~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~----------~i~s  687 (768)
                      +.  ....+..+.       .+...+.+++++|...++++....+..|.++|.. ++.+..+....          ....
T Consensus       150 ~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEG  228 (255)
T 3qqz_A          150 NGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEG  228 (255)
T ss_dssp             ESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEE
T ss_pred             cccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCe
Confidence            41  111122221       1334679999999988999999999999999976 66776666532          4578


Q ss_pred             EEEecCCCEEEEEEcCCeEEEEEC
Q 004207          688 MRFQPRLGRILAAAIENYISILDV  711 (768)
Q Consensus       688 l~fsp~~~~llags~Dg~I~IwD~  711 (768)
                      |+|.++|+ ++.++..+.+++|..
T Consensus       229 ia~d~~G~-lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          229 VAMDASGN-IYIVSEPNRFYRFTP  251 (255)
T ss_dssp             EEECTTCC-EEEEETTTEEEEEEC
T ss_pred             eEECCCCC-EEEEcCCceEEEEEe
Confidence            99999986 666688887777754

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.63  E-value=0.013  Score=62.28  Aligned_cols=206  Identities=12%  Similarity=0.083  Sum_probs=109.9

Q ss_pred             CceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE-EEeccCCCCEEEEEEcCCCCEEEEEeCCCc
Q 004207          542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRT  620 (768)
Q Consensus       542 ~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~-~tl~~h~~~V~sl~fspdg~~LaTgs~Dgt  620 (768)
                      +.++..+.....+.+.+.+|.+.+++..++++ .++.|..- .+.++.- .....+...+.++++.+++.+++++...+.
T Consensus       108 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~  185 (327)
T 2xbg_A          108 GQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSF  185 (327)
T ss_dssp             TSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSE
T ss_pred             CCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcE
Confidence            34444443322334557888887777666655 45654332 2223222 222344567899999999887776644433


Q ss_pred             EEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-----CCCeeEEEEecCCC
Q 004207          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLG  695 (768)
Q Consensus       621 IrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-----~~~i~sl~fsp~~~  695 (768)
                      .+-+|-..... ..........+..+.+.+++. ++ .++.+|.|++.+...++.-..+..     ...+..+.+.+++.
T Consensus       186 ~~S~d~gG~tW-~~~~~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~  262 (327)
T 2xbg_A          186 YSTWEPGQTAW-EPHNRTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE  262 (327)
T ss_dssp             EEEECTTCSSC-EEEECCSSSCEEEEEECTTSC-EE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC
T ss_pred             EEEeCCCCCce-eECCCCCCCccceeEECCCCC-EE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE
Confidence            33344311111 112233456789999998875 44 344578777764332332222221     13477888888654


Q ss_pred             EEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          696 RILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       696 ~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                       +++++.++.|. +....+..         |....    ....+...+.+|.|.++ ..+++++.+|.|.-++
T Consensus       263 -~~~~g~~g~i~-~S~DgG~t---------W~~~~----~~~~~~~~~~~v~~~~~-~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          263 -VWLAGGAGALL-CSQDGGQT---------WQQDV----DVKKVPSNFYKILFFSP-DQGFILGQKGILLRYV  319 (327)
T ss_dssp             -EEEEESTTCEE-EESSTTSS---------CEECG----GGTTSSSCCCEEEEEET-TEEEEECSTTEEEEEC
T ss_pred             -EEEEeCCCeEE-EeCCCCcc---------cEEcC----ccCCCCCCeEEEEEECC-CceEEEcCCceEEEEc
Confidence             55566677653 22222211         11000    00012345788888754 4566777889887654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.62  E-value=0.0045  Score=68.96  Aligned_cols=153  Identities=10%  Similarity=0.050  Sum_probs=97.6

Q ss_pred             CeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC
Q 004207          557 KVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENP  629 (768)
Q Consensus       557 ~I~sl~fSpd--g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg-----tIrVWDl~t~  629 (768)
                      ...+|+|+|+  ...|+++...+.|+.+|..++...... .......+|+|+++++ |+.+...+     .+..++....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence            4578999984  445555544489999999887766544 3445689999999999 44444322     2333333322


Q ss_pred             CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEE-ec--CCCeeEEEEecCCCEEEEEE-cCCe
Q 004207          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KC--QSGATQMRFQPRLGRILAAA-IENY  705 (768)
Q Consensus       630 ~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~-~~--~~~i~sl~fsp~~~~llags-~Dg~  705 (768)
                      ......+. .......++++|+...++++...++.|+.+|..++.....+ ..  ......++|+|++++|+++. ..+.
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~  296 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC  296 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence            11011222 23456778999954557766667789999999877763332 22  12234699999999776666 4678


Q ss_pred             EEEEECC
Q 004207          706 ISILDVE  712 (768)
Q Consensus       706 I~IwD~~  712 (768)
                      |..++..
T Consensus       297 I~~~~~d  303 (433)
T 4hw6_A          297 IYRVDYN  303 (433)
T ss_dssp             EEEEEBC
T ss_pred             EEEEeCC
Confidence            9988765

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.61  E-value=0.012  Score=62.67  Aligned_cols=155  Identities=8%  Similarity=-0.037  Sum_probs=102.0

Q ss_pred             CeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeE-EEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeE
Q 004207          557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSL  633 (768)
Q Consensus       557 ~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~~~-~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~  633 (768)
                      .+.+++|++.+. ++++-...+.|..++...... ...+...-.....+++.+. +.++++-...+.|.+++++.... .
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~  114 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-K  114 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-E
Confidence            367899998554 445555678899999876532 1222222234678899875 44555555678999999875432 2


Q ss_pred             EEeecCCCCeEEEEEeCCCCeEEEEEe-CCCcEEEEECCCCeeEEEE-ec-CCCeeEEEEecCCCEEEEEEc-CCeEEEE
Q 004207          634 RTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVF-KC-QSGATQMRFQPRLGRILAAAI-ENYISIL  709 (768)
Q Consensus       634 ~~~~~h~~~V~slafsp~g~~lLaSgs-~Dg~I~iWDl~sg~~i~~~-~~-~~~i~sl~fsp~~~~llags~-Dg~I~Iw  709 (768)
                      ............|+++|.+..++++-. ..+.|..+++.. .....+ .. -.....++|+++++.|+.+.. .+.|..+
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~  193 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS  193 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEE
Confidence            223334456789999998777776653 357888888863 333333 22 234678999998888887764 5778888


Q ss_pred             ECCC
Q 004207          710 DVET  713 (768)
Q Consensus       710 D~~t  713 (768)
                      |+..
T Consensus       194 d~dG  197 (318)
T 3sov_A          194 NLDG  197 (318)
T ss_dssp             ETTS
T ss_pred             cCCC
Confidence            8864

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.61  E-value=0.0044  Score=71.77  Aligned_cols=159  Identities=11%  Similarity=0.041  Sum_probs=104.6

Q ss_pred             EEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCeEEEEecc--CC--------CCEEEEEE
Q 004207          560 SCHFSPDGKLLATGGH--------------------D----KKAVLWCTESFTVKSTLEE--HT--------QWITDVRF  605 (768)
Q Consensus       560 sl~fSpdg~~LaSgs~--------------------D----g~I~VWdl~t~~~~~tl~~--h~--------~~V~sl~f  605 (768)
                      .+++.++..+|+++..                    |    +.|..+|.++++.+..+..  |.        .++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            4677777777776653                    2    5899999999999988743  32        1221 222


Q ss_pred             c-CCCC---EEEEEeCCCcEEEEECCCCCeeEEEeecC------------CCC---------------------------
Q 004207          606 S-PSLS---RLATSSADRTVRVWDTENPDYSLRTFTGH------------STT---------------------------  642 (768)
Q Consensus       606 s-pdg~---~LaTgs~DgtIrVWDl~t~~~~~~~~~~h------------~~~---------------------------  642 (768)
                      . .+++   .++.++.+|.|+++|.++++..-..-...            ..+                           
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~  408 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF  408 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence            2 4564   78889999999999999887532221111            000                           


Q ss_pred             -----eEEEEEeCCCCeEEEEEe--------------------------------CCCcEEEEECCCCeeEEEEecCCCe
Q 004207          643 -----VMSLDFHPSKEDLLCSCD--------------------------------NNSEIRYWSINNGSCAGVFKCQSGA  685 (768)
Q Consensus       643 -----V~slafsp~g~~lLaSgs--------------------------------~Dg~I~iWDl~sg~~i~~~~~~~~i  685 (768)
                           -..++++|+...+++...                                .+|.|..||+.+++.+..+.....+
T Consensus       409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~  488 (582)
T 1flg_A          409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL  488 (582)
T ss_dssp             TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC
T ss_pred             ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC
Confidence                 013456666554443221                                2578999999999998887765444


Q ss_pred             eEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207          686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLK  719 (768)
Q Consensus       686 ~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~  719 (768)
                      ..-.....++.+++++.|+.|+.||.++++.+..
T Consensus       489 ~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~  522 (582)
T 1flg_A          489 WAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK  522 (582)
T ss_dssp             CSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccceEeCCCEEEEECCCCcEEEEECCCCCEEEE
Confidence            3322333467888899999999999999876543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.57  E-value=0.02  Score=62.98  Aligned_cols=143  Identities=8%  Similarity=-0.020  Sum_probs=96.3

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCC---eeEEEeecCCCCeE
Q 004207          569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPD---YSLRTFTGHSTTVM  644 (768)
Q Consensus       569 ~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTg-s~DgtIrVWDl~t~~---~~~~~~~~h~~~V~  644 (768)
                      +|+.+. ...|+..+++.......+. ....+..|+|++....|+.+ ...+.|+.++++...   .....+........
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            444443 4689999988765554443 44568999999865555554 456789999987521   11233333445678


Q ss_pred             EEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCC
Q 004207          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI--ENYISILDVET  713 (768)
Q Consensus       645 slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~--Dg~I~IwD~~t  713 (768)
                      .|++.+.+..++++-...+.|.+.|+........+. .......++++|.+++|+.+..  .+.|..+++..
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG  234 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  234 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence            999998777788887778899999998654444443 2345789999998888887763  36777777765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.55  E-value=0.02  Score=68.69  Aligned_cols=160  Identities=13%  Similarity=0.018  Sum_probs=105.4

Q ss_pred             CCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCC----eEEEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 004207          554 STSKVESCHFSPDGKL-LATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTE  627 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~-LaSgs~Dg~I~VWdl~t~----~~~~tl~~h~~~V~sl~fspdg~~L-aTgs~DgtIrVWDl~  627 (768)
                      ....+..|+|.+.... +++-...+.|+.+++...    .....+.........|++.+.+..| ++-...+.|.+.+++
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            3456889999985554 445555678999988753    2233333344556789998876544 455567899999998


Q ss_pred             CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-CcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEc-CC
Q 004207          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-EN  704 (768)
Q Consensus       628 t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-g~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~-Dg  704 (768)
                      .... ...+.........|+++|.+..|+++-..+ +.|.+.++........+.. -.....|++++..+.|+++.. .+
T Consensus       502 G~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~  580 (791)
T 3m0c_C          502 GVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  580 (791)
T ss_dssp             SSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC
Confidence            5443 333333445689999999877777665433 7899999874433333332 245788999988888888764 46


Q ss_pred             eEEEEECCCc
Q 004207          705 YISILDVETQ  714 (768)
Q Consensus       705 ~I~IwD~~t~  714 (768)
                      .|..+++...
T Consensus       581 ~I~~~d~dG~  590 (791)
T 3m0c_C          581 SISSIDVNGG  590 (791)
T ss_dssp             EEEEEETTSC
T ss_pred             cEEEEecCCC
Confidence            7888888654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.54  E-value=0.0075  Score=68.19  Aligned_cols=154  Identities=14%  Similarity=0.147  Sum_probs=99.9

Q ss_pred             CeEEEEEcC-CCCEEEEE-eCCCcEEEEECCCCeEEEEeccC---CCCEEEEEE-------cCCCCEEEEEeCCC-----
Q 004207          557 KVESCHFSP-DGKLLATG-GHDKKAVLWCTESFTVKSTLEEH---TQWITDVRF-------SPSLSRLATSSADR-----  619 (768)
Q Consensus       557 ~I~sl~fSp-dg~~LaSg-s~Dg~I~VWdl~t~~~~~tl~~h---~~~V~sl~f-------spdg~~LaTgs~Dg-----  619 (768)
                      ....|+|+| +...|+++ ...+.|++.|++++.+...+...   ......|+|       ++++.+|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            356899998 34444444 44467899999887766554332   235899999       99999777776654     


Q ss_pred             --cEEEEECCC-CCee----EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC-------CCee----------
Q 004207          620 --TVRVWDTEN-PDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-------NGSC----------  675 (768)
Q Consensus       620 --tIrVWDl~t-~~~~----~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~-------sg~~----------  675 (768)
                        .|.+++... +...    ...+... .....++++|++..|+++...++.|..+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              266666443 2221    0222222 2345788999777788888888999999987       5543          


Q ss_pred             -EEE-Eec--CCCeeEEEEecCCCEEEEEE-cCCeEEEEEC
Q 004207          676 -AGV-FKC--QSGATQMRFQPRLGRILAAA-IENYISILDV  711 (768)
Q Consensus       676 -i~~-~~~--~~~i~sl~fsp~~~~llags-~Dg~I~IwD~  711 (768)
                       ... +..  ......++|+|++++|+++. ....|+.+|.
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence             112 222  23457899999999766665 4567887553

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.54  E-value=0.0097  Score=71.03  Aligned_cols=192  Identities=9%  Similarity=0.017  Sum_probs=120.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe---ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl---~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~  631 (768)
                      ...|.+++..++|.+. +|+.++-|.+||..++......   ......|.++...+++.+ ..|+.++.|.+||..++..
T Consensus       362 ~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~  439 (781)
T 3v9f_A          362 NKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKF  439 (781)
T ss_dssp             SSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEE
T ss_pred             CcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcE
Confidence            3569999998877644 5555666999997754432211   123467999998887764 4567777799999876543


Q ss_pred             eEEEee---cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec------CCCeeEEEEecCCCEEEEEEc
Q 004207          632 SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAI  702 (768)
Q Consensus       632 ~~~~~~---~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~------~~~i~sl~fsp~~~~llags~  702 (768)
                        ..+.   .....|.++...+++. +. .|+. +.|.+||..+++.......      ...|.++...+++. |.+++.
T Consensus       440 --~~~~~~~~~~~~v~~i~~d~~g~-lw-igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~  513 (781)
T 3v9f_A          440 --QIIELEKNELLDVRVFYEDKNKK-IW-IGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTF  513 (781)
T ss_dssp             --EECCSTTTCCCCEEEEEECTTSE-EE-EEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-EEEEES
T ss_pred             --EEeccCCCCCCeEEEEEECCCCC-EE-EEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC-EEEEEc
Confidence              2332   1346789998887765 43 3444 5688999887665443322      24578888888755 666666


Q ss_pred             CCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          703 ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       703 Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ++.|..||..+.....       +....+      -....|.++...+++.+.++ +.+|.|..||
T Consensus       514 ~~Gl~~~~~~~~~~~~-------~~~~~~------l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d  565 (781)
T 3v9f_A          514 GGGVGIYTPDMQLVRK-------FNQYEG------FCSNTINQIYRSSKGQMWLA-TGEGLVCFPS  565 (781)
T ss_dssp             SSCEEEECTTCCEEEE-------ECTTTT------CSCSCEEEEEECTTSCEEEE-ETTEEEEESC
T ss_pred             CCCEEEEeCCCCeEEE-------ccCCCC------CCCCeeEEEEECCCCCEEEE-ECCCceEEEC
Confidence            5558888887653321       111110      12356888888887775544 4466646654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.54  E-value=0.0053  Score=65.39  Aligned_cols=137  Identities=9%  Similarity=0.012  Sum_probs=90.1

Q ss_pred             CCcEEEEECCCCe--EEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC
Q 004207          576 DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK  652 (768)
Q Consensus       576 Dg~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspdg~-~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g  652 (768)
                      ...|+.++++...  ....+. ....+..++|++... ++++-...+.|..++++........+...-.....+++.+.+
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~   90 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   90 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred             cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence            4578899987653  222222 223567899998644 445555678899999886532122222233457789999877


Q ss_pred             CeEEEEEeCCCcEEEEECCCCeeEEEE-ecCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCC
Q 004207          653 EDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVET  713 (768)
Q Consensus       653 ~~lLaSgs~Dg~I~iWDl~sg~~i~~~-~~~~~i~sl~fsp~~~~llags~--Dg~I~IwD~~t  713 (768)
                      ..++++-...+.|.++++........+ ........++++|.+++|+.+..  .+.|..+++..
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG  154 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG  154 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS
T ss_pred             CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC
Confidence            778877777889999998754332222 22345788999998888887763  46777777754

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.53  E-value=0.0055  Score=65.46  Aligned_cols=164  Identities=9%  Similarity=0.095  Sum_probs=109.7

Q ss_pred             eccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCeeEEEeec----CC--CCeEEEEE---eCCCCeEEEEEe--
Q 004207          593 LEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTG----HS--TTVMSLDF---HPSKEDLLCSCD--  660 (768)
Q Consensus       593 l~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVWDl~t~~~~~~~~~~----h~--~~V~slaf---sp~g~~lLaSgs--  660 (768)
                      +........+++|++....|+.++ ..++|..||...+......+.+    ..  ..+..|.|   .|+ ..++++..  
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~   86 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNA   86 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEET
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccc
Confidence            333444456899988655666655 7999999999865432222221    11  13578999   688 44665443  


Q ss_pred             -----------CCCcEEEEECC---CCeeEEEEecC--------------CCeeEEEEecCCCEEEEEEcC-CeEEEEEC
Q 004207          661 -----------NNSEIRYWSIN---NGSCAGVFKCQ--------------SGATQMRFQPRLGRILAAAIE-NYISILDV  711 (768)
Q Consensus       661 -----------~Dg~I~iWDl~---sg~~i~~~~~~--------------~~i~sl~fsp~~~~llags~D-g~I~IwD~  711 (768)
                                 .+..|..||+.   +++.+......              .....++..++|+..++++.. +.|..++.
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence                       26779999999   88877666531              247789999999999989888 88888887


Q ss_pred             CCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          712 ETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       712 ~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ....       +..|.+...    .....-..+.|+++|++..|++...+|.|..+|
T Consensus       167 dG~~-------~~~~~~~~~----~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD  212 (334)
T 2p9w_A          167 DGKT-------VSTFAWESG----NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD  212 (334)
T ss_dssp             TSCC-------EEEEEECCC----CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred             CCCE-------EeeeeecCC----CcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence            6542       233433221    112233477999999999888887788887654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.51  E-value=0.0069  Score=64.73  Aligned_cols=161  Identities=10%  Similarity=0.138  Sum_probs=107.1

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEeccC-----C--CCEEEEEE---cCCCCEEEEEe---
Q 004207          551 IPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEH-----T--QWITDVRF---SPSLSRLATSS---  616 (768)
Q Consensus       551 l~~H~~~I~sl~fSpdg~~LaSgs-~Dg~I~VWdl~t~~~~~tl~~h-----~--~~V~sl~f---spdg~~LaTgs---  616 (768)
                      +......-.|++|++....|..++ ..++|..||...+.........     .  ..+..|.|   .|+++++++..   
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~   87 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK   87 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence            344455567899988555555554 7999999999865544332222     1  13689999   68877776543   


Q ss_pred             ----------CCCcEEEEECC---CCCeeEE-EeecC-----------CCCeEEEEEeCCCCeEEEEEeCC-CcEEEEEC
Q 004207          617 ----------ADRTVRVWDTE---NPDYSLR-TFTGH-----------STTVMSLDFHPSKEDLLCSCDNN-SEIRYWSI  670 (768)
Q Consensus       617 ----------~DgtIrVWDl~---t~~~~~~-~~~~h-----------~~~V~slafsp~g~~lLaSgs~D-g~I~iWDl  670 (768)
                                .+..|..||+.   +++.... .+...           ...+..++..++|+ .+++++.. +.|..++.
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECT
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeC
Confidence                      15779999998   6654222 22111           12478899999987 55577777 77777776


Q ss_pred             CCCeeEEEEec-------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207          671 NNGSCAGVFKC-------QSGATQMRFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       671 ~sg~~i~~~~~-------~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                      .. +.+..+..       ....+.|+++|++..|++....+.|..||+.+
T Consensus       167 dG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          167 DG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             TS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            53 33333321       12366899999999999887899999999874

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.50  E-value=0.031  Score=66.58  Aligned_cols=153  Identities=9%  Similarity=-0.027  Sum_probs=99.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q 004207          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~--~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~  631 (768)
                      ....|.++...+++.+.+ |+.++-|.+||..+++......  .....|.++...+++.+ ..|+. +-|.+||..++..
T Consensus       405 ~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~  481 (781)
T 3v9f_A          405 LSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKKV  481 (781)
T ss_dssp             CCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSSC
T ss_pred             CCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCeE
Confidence            346799999887777554 6666779999987766543221  23467999999888764 44555 5689999887654


Q ss_pred             eEEEeecC-----CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-----CCCeeEEEEecCCCEEEEEE
Q 004207          632 SLRTFTGH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGRILAAA  701 (768)
Q Consensus       632 ~~~~~~~h-----~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-----~~~i~sl~fsp~~~~llags  701 (768)
                      .. .....     ...|.++...++|. +. .|+.++-|..||..+++... +..     ...|.++...+++. |.+++
T Consensus       482 ~~-~~~~~~~~~~~~~i~~i~~d~~g~-lW-igt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~-lWi~T  556 (781)
T 3v9f_A          482 IH-HYDTSNSQLLENFVRSIAQDSEGR-FW-IGTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQ-MWLAT  556 (781)
T ss_dssp             CE-EECTTTSSCSCSCEEEEEECTTCC-EE-EEESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSC-EEEEE
T ss_pred             Ee-cccCcccccccceeEEEEEcCCCC-EE-EEEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCC-EEEEE
Confidence            22 21111     35789999988876 33 34444458889987665433 321     24577888888765 55556


Q ss_pred             cCCeEEEEECCCc
Q 004207          702 IENYISILDVETQ  714 (768)
Q Consensus       702 ~Dg~I~IwD~~t~  714 (768)
                      .+|.|..||..+.
T Consensus       557 ~~Glv~~~d~~~~  569 (781)
T 3v9f_A          557 GEGLVCFPSARNF  569 (781)
T ss_dssp             TTEEEEESCTTTC
T ss_pred             CCCceEEECCCCC
Confidence            6554488887654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.47  E-value=0.0058  Score=71.03  Aligned_cols=151  Identities=8%  Similarity=0.034  Sum_probs=97.0

Q ss_pred             CCEEEEEeC-CCcEEEEEC-CCCeEEEEeccCCCC-----------EEEEEEcCCCCE----EEEEeCCCcEEEEECCCC
Q 004207          567 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQW-----------ITDVRFSPSLSR----LATSSADRTVRVWDTENP  629 (768)
Q Consensus       567 g~~LaSgs~-Dg~I~VWdl-~t~~~~~tl~~h~~~-----------V~sl~fspdg~~----LaTgs~DgtIrVWDl~t~  629 (768)
                      +..|++++. ++.|+.+|. .+++.+..+......           ...++++|.+..    |++++.|+.|..+|.+++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            456666666 889999999 899999887543211           123455443334    888889999999999998


Q ss_pred             CeeEEEeecC-C--CCeE-EEEEeCCCCeEEEEEe-----CCCcEEEEECCCCeeEEEEecCCCe---------------
Q 004207          630 DYSLRTFTGH-S--TTVM-SLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSGA---------------  685 (768)
Q Consensus       630 ~~~~~~~~~h-~--~~V~-slafsp~g~~lLaSgs-----~Dg~I~iWDl~sg~~i~~~~~~~~i---------------  685 (768)
                      +..-..-... .  ..++ +..+. + ..+++.++     .++.|+.+|.++|+.+..+......               
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            8633322111 0  0111 11122 2 33443332     3789999999999999887753322               


Q ss_pred             ------------------------eEEEEecCCCEEEEEEcCC----------------eEEEEECCCceEeee
Q 004207          686 ------------------------TQMRFQPRLGRILAAAIEN----------------YISILDVETQVCRLK  719 (768)
Q Consensus       686 ------------------------~sl~fsp~~~~llags~Dg----------------~I~IwD~~t~~~~~~  719 (768)
                                              ..+++.+..+.++.++.+.                .|..+|.++++....
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~  293 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFG  293 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEE
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeE
Confidence                                    1356778888888877653                678888887766543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.43  E-value=0.002  Score=76.86  Aligned_cols=112  Identities=12%  Similarity=0.145  Sum_probs=74.8

Q ss_pred             CEEEEEEc-CCCCEEEEEeC-CC----cEEEEECCCC-CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC----CcEEE
Q 004207          599 WITDVRFS-PSLSRLATSSA-DR----TVRVWDTENP-DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRY  667 (768)
Q Consensus       599 ~V~sl~fs-pdg~~LaTgs~-Dg----tIrVWDl~t~-~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D----g~I~i  667 (768)
                      .+...+|| |||++|+.+.. +|    +|+++|+.++ +.....+..   ...+++|+|+++.++++...+    ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            67889999 99998876543 33    5999999987 531111211   135688999998888776532    36888


Q ss_pred             EECCCCee--EEEEec--CCCeeEEEEecCCCEEEEEEcC---CeEEEEECCC
Q 004207          668 WSINNGSC--AGVFKC--QSGATQMRFQPRLGRILAAAIE---NYISILDVET  713 (768)
Q Consensus       668 WDl~sg~~--i~~~~~--~~~i~sl~fsp~~~~llags~D---g~I~IwD~~t  713 (768)
                      +++.++..  +..+..  ......+.|+|++.+|+..+.+   ..|+++|+.+
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            89887642  233332  2345678999999998877643   3466666655

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.37  E-value=0.034  Score=64.90  Aligned_cols=158  Identities=8%  Similarity=0.017  Sum_probs=107.3

Q ss_pred             CCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCeeE
Q 004207          556 SKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSL  633 (768)
Q Consensus       556 ~~I~sl~fSpdg~~La-Sgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~L-aTgs~DgtIrVWDl~t~~~~~  633 (768)
                      ..+..|+|++.+..|+ +-..++.|..++++.......+.........|++.+.+..| ++-...+.|.+.+++.... .
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~  115 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-Q  115 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-E
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-E
Confidence            4578999999666555 44567889999987654444443333457789998765555 5545567899999875442 2


Q ss_pred             EEeecCCCCeEEEEEeCCCCeEEEEE-eCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEEC
Q 004207          634 RTFTGHSTTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDV  711 (768)
Q Consensus       634 ~~~~~h~~~V~slafsp~g~~lLaSg-s~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~-Dg~I~IwD~  711 (768)
                      ..+...-.....|+++|....++++- +..+.|...++........+..-.....++++++++.|+.+.. .+.|..+|+
T Consensus       116 ~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~  195 (628)
T 4a0p_A          116 VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM  195 (628)
T ss_dssp             EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence            22323445678999999777777664 2357888888875444333444456788999998888887764 577888888


Q ss_pred             CCc
Q 004207          712 ETQ  714 (768)
Q Consensus       712 ~t~  714 (768)
                      ...
T Consensus       196 dG~  198 (628)
T 4a0p_A          196 LGL  198 (628)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.31  E-value=0.0042  Score=69.13  Aligned_cols=151  Identities=11%  Similarity=0.090  Sum_probs=94.2

Q ss_pred             CEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC----cEEEEECCCC
Q 004207          599 WITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNG  673 (768)
Q Consensus       599 ~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg----~I~iWDl~sg  673 (768)
                      ....|+|+| +...|+++...+.|+++|++.+.  +..+.........|+|+++++.++++...++    .+.+++. .+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence            457899998 45566666665889999998654  3334445566889999999987776665333    2333443 33


Q ss_pred             eeE--EEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeC
Q 004207          674 SCA--GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAST  750 (768)
Q Consensus       674 ~~i--~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~sp  750 (768)
                      ...  ..+........++++|+.+.|+++. .++.|..||..+....      .+.        .. ........|+|+|
T Consensus       215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~------~~~--------~~-~~~~~P~gia~~p  279 (430)
T 3tc9_A          215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT------PLF--------TI-QDSGWEFHIQFHP  279 (430)
T ss_dssp             TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE------EEE--------EC-SSSSCCEEEEECT
T ss_pred             ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE------EEE--------Ec-CCCCcceeEEEcC
Confidence            222  2333344567788999545555555 5678888988765431      011        11 1123467899999


Q ss_pred             CCCEEEEEE-CCCcEEEe
Q 004207          751 VNGMVASAS-HDKCVKIW  767 (768)
Q Consensus       751 dg~~LaSgs-~DG~V~IW  767 (768)
                      ++++|+.+. ..+.|.++
T Consensus       280 dG~~lyv~d~~~~~I~~~  297 (430)
T 3tc9_A          280 SGNYAYIVVVNQHYILRS  297 (430)
T ss_dssp             TSSEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEECCCCEEEEE
Confidence            998555554 45667665

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.28  E-value=0.045  Score=65.54  Aligned_cols=144  Identities=7%  Similarity=-0.018  Sum_probs=95.7

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCC---eeEEEeecCCCCeE
Q 004207          569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPD---YSLRTFTGHSTTVM  644 (768)
Q Consensus       569 ~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~L-aTgs~DgtIrVWDl~t~~---~~~~~~~~h~~~V~  644 (768)
                      +|+.+ ....|+..++........+. ....+..|+|++....| ++-...+.|+.++++...   .....+........
T Consensus       397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~  474 (791)
T 3m0c_C          397 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  474 (791)
T ss_dssp             EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence            34433 34578888887665554444 34568899999855544 455556789999987531   11233333445678


Q ss_pred             EEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcC--CeEEEEECCCc
Q 004207          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDVETQ  714 (768)
Q Consensus       645 slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~D--g~I~IwD~~t~  714 (768)
                      .|++.+.++.|+++-...+.|.+.++........+. .......|+++|..++|+.+...  +.|.++++...
T Consensus       475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~  547 (791)
T 3m0c_C          475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  547 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence            899998888888888888999999998544333333 23457899999988888887642  67888887654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.17  E-value=0.061  Score=57.86  Aligned_cols=142  Identities=12%  Similarity=0.151  Sum_probs=80.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEec---cCCCCEEEEEEcCC---CCEEEEEeC-C-----CcE
Q 004207          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE---EHTQWITDVRFSPS---LSRLATSSA-D-----RTV  621 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~--~~tl~---~h~~~V~sl~fspd---g~~LaTgs~-D-----gtI  621 (768)
                      ..-.+++|.|||+++++ ..+|.|++++  +++.  +..+.   ........|+|+|+   +..|+++.. .     ..|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            34678999999985555 5679999998  3432  22221   12346899999998   555555443 2     678


Q ss_pred             EEEECCCCCe-----eEEEee---cCCCCeEEEEEeCCCCeEEEEEeC-------------CCcEEEEECCCC-------
Q 004207          622 RVWDTENPDY-----SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG-------  673 (768)
Q Consensus       622 rVWDl~t~~~-----~~~~~~---~h~~~V~slafsp~g~~lLaSgs~-------------Dg~I~iWDl~sg-------  673 (768)
                      ..|+......     .+..+.   +.......|+|.|+|. ++++.+.             .+.|.-+|....       
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            8888764321     112122   1112346899999986 5544321             145666665420       


Q ss_pred             -----eeEEEEe-cCCCeeEEEEecCCCEEEEEE
Q 004207          674 -----SCAGVFK-CQSGATQMRFQPRLGRILAAA  701 (768)
Q Consensus       674 -----~~i~~~~-~~~~i~sl~fsp~~~~llags  701 (768)
                           .....+. .......++|+|+.+.|+++.
T Consensus       187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d  220 (352)
T 2ism_A          187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSE  220 (352)
T ss_dssp             TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEE
T ss_pred             cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEE
Confidence                 1111121 223456788999444455544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.05  E-value=0.0015  Score=77.44  Aligned_cols=156  Identities=12%  Similarity=-0.014  Sum_probs=96.5

Q ss_pred             CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCC----CeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC
Q 004207          556 SKVESCHFSPDGKLLATG-GHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP  629 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSg-s~Dg~I~VWdl~t----~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~  629 (768)
                      ..+..|+|++.+..|+.+ ...+.|+.+++.+    ......+.........|++.+. ++++++-...+.|.+++++..
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            346789999876666555 4557899999875    2222222211223567888864 444455456788999998754


Q ss_pred             CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-CcEEEEECCCCeeEEEEe-c-CCCeeEEEEecCCCEEEEEE-cCCe
Q 004207          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFK-C-QSGATQMRFQPRLGRILAAA-IENY  705 (768)
Q Consensus       630 ~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-g~I~iWDl~sg~~i~~~~-~-~~~i~sl~fsp~~~~llags-~Dg~  705 (768)
                      .. ...+.........|+++|.+..|+++-... +.|.++++... ....+. . -.....|+|+|+++.|+++. ..+.
T Consensus       486 ~~-~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~  563 (699)
T 1n7d_A          486 KR-KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  563 (699)
T ss_dssp             CE-EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTE
T ss_pred             ce-EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCe
Confidence            32 223332234567899999877677655333 78888887632 222221 1 23456799999877777766 4567


Q ss_pred             EEEEECCC
Q 004207          706 ISILDVET  713 (768)
Q Consensus       706 I~IwD~~t  713 (768)
                      |.++|+..
T Consensus       564 I~~~d~dG  571 (699)
T 1n7d_A          564 ISSIDVNG  571 (699)
T ss_dssp             EEEECSSS
T ss_pred             EEEEccCC
Confidence            88888865

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.99  E-value=0.51  Score=52.04  Aligned_cols=108  Identities=17%  Similarity=0.225  Sum_probs=72.1

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecC
Q 004207          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH  639 (768)
Q Consensus       560 sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h  639 (768)
                      +.-.+|..+.||.-. ..++.|||+++...+..+.-.. .|.--+|-.+ +.|+-. .+..|+-|+++....+...+..|
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lV-T~taVyHWsi~~~s~P~kvFdR~  145 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALV-TDNAVYHWSMEGESQPVKMFDRH  145 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEE-CSSEEEEEESSSSCCCEEEEECC
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEE-cCCeeEEecccCCCCchhheecc
Confidence            345677777777665 5789999999988888776544 4656666544 345444 35689999998655666666655


Q ss_pred             C----CCeEEEEEeCCCCeEEEEEe------CCCcEEEEECC
Q 004207          640 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSIN  671 (768)
Q Consensus       640 ~----~~V~slafsp~g~~lLaSgs------~Dg~I~iWDl~  671 (768)
                      .    ..|.....+++.++++++|-      -.|.+.+|.++
T Consensus       146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e  187 (494)
T 1bpo_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD  187 (494)
T ss_dssp             GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred             hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc
Confidence            3    45666667777777766553      23455666654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.93  E-value=0.11  Score=60.38  Aligned_cols=159  Identities=9%  Similarity=-0.026  Sum_probs=102.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeE-EEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCe
Q 004207          555 TSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDY  631 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs-~Dg~I~VWdl~t~~~-~~tl~~h~~~V~sl~fspdg~~L-aTgs~DgtIrVWDl~t~~~  631 (768)
                      -..+..++|++.+..|+.+. ..+.|..++++.... ...+...-.....|++.+.+..| ++-...+.|.+.+++....
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            34578899999766666554 467898998876532 23333333568999999865544 4555678999999986442


Q ss_pred             eEEEeecCCCCeEEEEEeCCCCeEEEEEe-CCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEc-CCeEEE
Q 004207          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI-ENYISI  708 (768)
Q Consensus       632 ~~~~~~~h~~~V~slafsp~g~~lLaSgs-~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~-Dg~I~I  708 (768)
                       .......-.....|+++|.+..++++-- ..+.|...++.......... .-.....++++++++.|+.+.. .+.|..
T Consensus       119 -~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~  197 (619)
T 3s94_A          119 -KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK  197 (619)
T ss_dssp             -EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             -EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEE
Confidence             2223234456789999998777776652 24677777776332222222 2345688999998888887764 567888


Q ss_pred             EECCCc
Q 004207          709 LDVETQ  714 (768)
Q Consensus       709 wD~~t~  714 (768)
                      +|+...
T Consensus       198 ~~~dG~  203 (619)
T 3s94_A          198 SNLDGT  203 (619)
T ss_dssp             ESSSCC
T ss_pred             ecCCCC
Confidence            888653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.90  E-value=0.16  Score=54.96  Aligned_cols=188  Identities=15%  Similarity=0.151  Sum_probs=109.6

Q ss_pred             CeEEEEEcCCCCEEEEEe------------CCCcEEEEECCC--CeEE-EEecc-----CCCCEEEEEEcC--CCC-EEE
Q 004207          557 KVESCHFSPDGKLLATGG------------HDKKAVLWCTES--FTVK-STLEE-----HTQWITDVRFSP--SLS-RLA  613 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs------------~Dg~I~VWdl~t--~~~~-~tl~~-----h~~~V~sl~fsp--dg~-~La  613 (768)
                      ....+.+.++|..+++++            .+|.|.++|.++  .+.. ..+.+     .......|.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            456677788876655552            689999999873  2321 12222     123567777755  343 455


Q ss_pred             EEeC---CCcEEEEECCCCCee---EEEeecC-CCCeEEEEEeCCCCeEEEEEe-----------------CCCcEEEEE
Q 004207          614 TSSA---DRTVRVWDTENPDYS---LRTFTGH-STTVMSLDFHPSKEDLLCSCD-----------------NNSEIRYWS  669 (768)
Q Consensus       614 Tgs~---DgtIrVWDl~t~~~~---~~~~~~h-~~~V~slafsp~g~~lLaSgs-----------------~Dg~I~iWD  669 (768)
                      ++..   +.+|.||+++.....   +..+.+. -.....+.+.++|. ++++..                 ..|.|..||
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            5432   467888887654322   2233322 24578999999976 444543                 124455555


Q ss_pred             CCCCeeEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEE
Q 004207          670 INNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAA  748 (768)
Q Consensus       670 l~sg~~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~  748 (768)
                      .  +++......-...+.++|+|++..++++. ..+.|..||+.......   ..+++++           .+..-.+++
T Consensus       210 ~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~---~~~~~~~-----------~g~PDGi~v  273 (355)
T 3sre_A          210 P--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLT---PLRVLSF-----------DTLVDNISV  273 (355)
T ss_dssp             T--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEE---EEEEEEC-----------SSEEEEEEE
T ss_pred             C--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEe---cCEEEeC-----------CCCCceEEE
Confidence            4  34433344445678999999998888776 46889999986421111   1222221           244567777


Q ss_pred             eC-CCCEEEEEECC
Q 004207          749 ST-VNGMVASASHD  761 (768)
Q Consensus       749 sp-dg~~LaSgs~D  761 (768)
                      .+ +|++.+++..+
T Consensus       274 D~e~G~lwva~~~~  287 (355)
T 3sre_A          274 DPVTGDLWVGCHPN  287 (355)
T ss_dssp             CTTTCCEEEEEESC
T ss_pred             eCCCCcEEEEecCC
Confidence            77 47766655433

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.85  E-value=0.18  Score=58.56  Aligned_cols=139  Identities=9%  Similarity=0.014  Sum_probs=87.1

Q ss_pred             CCCcEEEEECCCCe-EEEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC
Q 004207          575 HDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK  652 (768)
Q Consensus       575 ~Dg~I~VWdl~t~~-~~~tl~~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g  652 (768)
                      ....|++.++.... ....+...-..+..|+|++.+..|+.+.. .+.|..++++........+...-.....|++++.+
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~   95 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   95 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence            45678888887643 22222233456789999997666665544 67899999875432123333333568899999987


Q ss_pred             CeEEEEEeCCCcEEEEECCCCeeEEEE-ecCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCC
Q 004207          653 EDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVET  713 (768)
Q Consensus       653 ~~lLaSgs~Dg~I~iWDl~sg~~i~~~-~~~~~i~sl~fsp~~~~llags~--Dg~I~IwD~~t  713 (768)
                      +.++++-...+.|.+.++........+ ..-.....++++|.+++|+.+..  .+.|...++..
T Consensus        96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG  159 (619)
T 3s94_A           96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG  159 (619)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC
Confidence            888888888899999999754333333 22345678999998888887764  34566666543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.84  E-value=0.14  Score=55.08  Aligned_cols=139  Identities=9%  Similarity=0.098  Sum_probs=90.6

Q ss_pred             CCcEEEEECC--CCeEEEEecc------CC-CCEEEEEE--cCC-CC-EEEEEeCCCcEEEEECCC---CC---eeEEEe
Q 004207          576 DKKAVLWCTE--SFTVKSTLEE------HT-QWITDVRF--SPS-LS-RLATSSADRTVRVWDTEN---PD---YSLRTF  636 (768)
Q Consensus       576 Dg~I~VWdl~--t~~~~~tl~~------h~-~~V~sl~f--spd-g~-~LaTgs~DgtIrVWDl~t---~~---~~~~~~  636 (768)
                      +.+|.||+++  +++ +..+..      .. ..+..+|+  ++. +. ++++...+|.+..|++..   +.   ..++.+
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            5789999773  333 444421      11 45677777  774 44 688888999999999842   21   224555


Q ss_pred             ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC-----CCeeEEEEec---CCCeeEEEEe--cCCC-EEEEEE-cCC
Q 004207          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-----NGSCAGVFKC---QSGATQMRFQ--PRLG-RILAAA-IEN  704 (768)
Q Consensus       637 ~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~-----sg~~i~~~~~---~~~i~sl~fs--p~~~-~llags-~Dg  704 (768)
                      .- .+.+..|...+....++ .+.++..|..||.+     +++.+..+..   ...+..|++-  +++. +|++++ .++
T Consensus       177 ~l-gsq~EgcvvDd~~g~Ly-v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~  254 (355)
T 3amr_A          177 KM-NSQTEGMAADDEYGRLY-IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS  254 (355)
T ss_dssp             EC-SSCEEEEEEETTTTEEE-EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             cC-CCCcceEEEcCCCCeEE-EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence            53 45788899998766555 77777777777755     3455555433   2467788874  4444 777777 577


Q ss_pred             eEEEEECC-CceEe
Q 004207          705 YISILDVE-TQVCR  717 (768)
Q Consensus       705 ~I~IwD~~-t~~~~  717 (768)
                      .+.+||.. +.+.+
T Consensus       255 s~~Vydr~~~~~~v  268 (355)
T 3amr_A          255 SYAIYDRQGKNKYV  268 (355)
T ss_dssp             EEEEEESSTTCCEE
T ss_pred             EEEEEECCCCCcEE
Confidence            99999996 44443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.83  E-value=0.0004  Score=82.75  Aligned_cols=14  Identities=21%  Similarity=0.207  Sum_probs=2.8

Q ss_pred             ccCCCCeeEEEEeC
Q 004207          737 SAHDKLVSSLAAST  750 (768)
Q Consensus       737 ~~H~~~I~sla~sp  750 (768)
                      .+|-..+..+.|.+
T Consensus       706 SDH~pV~a~f~l~~  719 (727)
T 4b8c_D          706 SDHIPLLARFEFMK  719 (727)
T ss_dssp             SSBCC---------
T ss_pred             CCceeEEEEEEEec
Confidence            45655566666654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.73  E-value=0.24  Score=57.73  Aligned_cols=144  Identities=8%  Similarity=0.002  Sum_probs=95.7

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEec-cCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCeeEEEeecCCCCeEEE
Q 004207          569 LLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (768)
Q Consensus       569 ~LaSgs~Dg~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~~La-Tgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sl  646 (768)
                      +|+.+ ....|+..++++......+. ..-..+..|+|++....|+ +-..++.|+.++++.... ...+.........|
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~Gl   85 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEGM   85 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcceE
Confidence            34433 45679999998765443332 2234688999999755555 445578999999876443 23333223457789


Q ss_pred             EEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEE-ecCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCc
Q 004207          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQ  714 (768)
Q Consensus       647 afsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~-~~~~~i~sl~fsp~~~~llags~--Dg~I~IwD~~t~  714 (768)
                      ++++.+..++++-...+.|.+.++........+ ..-.....++++|..++|+.+..  .+.|..+++...
T Consensus        86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~  156 (628)
T 4a0p_A           86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS  156 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC
Confidence            998887888888777889999998754332222 22345789999998888887763  456777766543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.68  E-value=0.23  Score=52.56  Aligned_cols=159  Identities=11%  Similarity=0.147  Sum_probs=96.7

Q ss_pred             CceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE-EEC--CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC
Q 004207          542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL-WCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD  618 (768)
Q Consensus       542 ~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~V-Wdl--~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D  618 (768)
                      +.++..+.  ..+...+.++.+.+++.+++++. +|.|.. +|-  .+.+.+.  ......+..+.+.+++.++ .++.+
T Consensus       151 G~tW~~~~--~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~  224 (327)
T 2xbg_A          151 GKNWQALV--QEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNG  224 (327)
T ss_dssp             TSSEEEEE--CSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETT
T ss_pred             CCCCEEee--cCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCC
Confidence            44555543  24556799999999988887664 454444 442  3344432  2345678999999988655 45568


Q ss_pred             CcEEEEECCCCCeeEEEee-c---CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCeeEEEE
Q 004207          619 RTVRVWDTENPDYSLRTFT-G---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRF  690 (768)
Q Consensus       619 gtIrVWDl~t~~~~~~~~~-~---h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~----~~~i~sl~f  690 (768)
                      |.|++++.+.+.. -..+. .   +...+.++.+.+++. +++++. ++.| ++....++.-..+..    ...+.++.|
T Consensus       225 G~~~~s~~D~G~t-W~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~  300 (327)
T 2xbg_A          225 GKIAFSDPDNSEN-WGELLSPLRRNSVGFLDLAYRTPNE-VWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILF  300 (327)
T ss_dssp             TEEEEEETTEEEE-ECCCBCTTSSCCSCEEEEEESSSSC-EEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEE
T ss_pred             ceEEEecCCCCCe-eEeccCCcccCCcceEEEEecCCCE-EEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEE
Confidence            8888775332221 11111 1   223588999988654 554544 6766 455555544333331    356788888


Q ss_pred             ecCCCEEEEEEcCCeEEEEEC
Q 004207          691 QPRLGRILAAAIENYISILDV  711 (768)
Q Consensus       691 sp~~~~llags~Dg~I~IwD~  711 (768)
                      .++ ..+++++.+|.|..++-
T Consensus       301 ~~~-~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          301 FSP-DQGFILGQKGILLRYVT  320 (327)
T ss_dssp             EET-TEEEEECSTTEEEEECC
T ss_pred             ECC-CceEEEcCCceEEEEcC
Confidence            754 56788888998776654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.55  E-value=0.4  Score=51.50  Aligned_cols=190  Identities=11%  Similarity=0.050  Sum_probs=97.2

Q ss_pred             CCeEEEEEcCC---CCEEEEEeC----C----CcEEEEECCCC-------eEE-EEecc-CCCCEEEEEEcCCCCEEEEE
Q 004207          556 SKVESCHFSPD---GKLLATGGH----D----KKAVLWCTESF-------TVK-STLEE-HTQWITDVRFSPSLSRLATS  615 (768)
Q Consensus       556 ~~I~sl~fSpd---g~~LaSgs~----D----g~I~VWdl~t~-------~~~-~tl~~-h~~~V~sl~fspdg~~LaTg  615 (768)
                      .....|+|+|+   +..|+++..    +    ..|..|+....       +.+ ..+.. .......|+|.|||.++++.
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence            45889999997   555544433    3    56777876643       111 11221 11124679999999877664


Q ss_pred             eC-------------CCcEEEEECCCC--------CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC---cEEEEECC
Q 004207          616 SA-------------DRTVRVWDTENP--------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS---EIRYWSIN  671 (768)
Q Consensus       616 s~-------------DgtIrVWDl~t~--------~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg---~I~iWDl~  671 (768)
                      +.             .|.|.-++.+..        .. .....++. ....++|+|+...++++-....   .|.+..-.
T Consensus       153 G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~-~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G  230 (354)
T 3a9g_A          153 GDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNS-PIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKG  230 (354)
T ss_dssp             CCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTC-CEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTT
T ss_pred             CCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCC-cEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCC
Confidence            33             245555555431        11 11223443 4568999994444654432221   24333211


Q ss_pred             C--------C--------eeEEEE-ecCCCeeEEEEe-------cCCCEEEEEEcCCeEEEEECCCceEeeecceeEEee
Q 004207          672 N--------G--------SCAGVF-KCQSGATQMRFQ-------PRLGRILAAAIENYISILDVETQVCRLKLQTLELWN  727 (768)
Q Consensus       672 s--------g--------~~i~~~-~~~~~i~sl~fs-------p~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd  727 (768)
                      .        +        ..+..+ ..+.....++|.       .++..+++....+.|..+++........   ...  
T Consensus       231 ~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~---~~~--  305 (354)
T 3a9g_A          231 GNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRK---IST--  305 (354)
T ss_dssp             CBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEE---EEE--
T ss_pred             CcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccc---eee--
Confidence            0        0        122222 123456677773       3443344433456677777654211100   000  


Q ss_pred             cCCCceEEeccCCCCeeEEEEeCCCCEEEEEE
Q 004207          728 MTENKTLTLSAHDKLVSSLAASTVNGMVASAS  759 (768)
Q Consensus       728 ~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs  759 (768)
                             .+..-...+..|++.|||.++++..
T Consensus       306 -------~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          306 -------FFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             -------ECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             -------eccCCCCCeeEEEECCCCcEEEEEe
Confidence                   1112235689999999998766664

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.49  E-value=0.33  Score=52.09  Aligned_cols=144  Identities=13%  Similarity=0.056  Sum_probs=80.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------ccCCCCEEEEEEcCC---CCEEEEEe-C-------C
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPS---LSRLATSS-A-------D  618 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl-------~~h~~~V~sl~fspd---g~~LaTgs-~-------D  618 (768)
                      ....|+|.|+|++|+++...|.|++++.. +.....+       .........|+|+|+   +..|+.+. .       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            46899999999934455567999999854 3322111       112345789999996   45554442 2       2


Q ss_pred             CcEEEEECCCCC----eeEEEeec------CCCCeEEEEEeCCCCeEEEEEeC-------------CCcEEEEECCCCe-
Q 004207          619 RTVRVWDTENPD----YSLRTFTG------HSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNGS-  674 (768)
Q Consensus       619 gtIrVWDl~t~~----~~~~~~~~------h~~~V~slafsp~g~~lLaSgs~-------------Dg~I~iWDl~sg~-  674 (768)
                      ..|..|++....    .....+..      .......|+|.|+|. |+++.+.             .|.|.-+|....- 
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            356666665331    11111111      112246799999985 4444332             2467667765320 


Q ss_pred             -----------eEEEEe-cCCCeeEEEEecCCCEEEEEEc
Q 004207          675 -----------CAGVFK-CQSGATQMRFQPRLGRILAAAI  702 (768)
Q Consensus       675 -----------~i~~~~-~~~~i~sl~fsp~~~~llags~  702 (768)
                                 ....+. .......++|+|..+.|+++..
T Consensus       177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~  216 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEH  216 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEE
T ss_pred             CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEec
Confidence                       112222 2345778999995566666554

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.46  E-value=0.13  Score=53.27  Aligned_cols=144  Identities=6%  Similarity=0.027  Sum_probs=72.6

Q ss_pred             CCCEEEEEeCC----CcEEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCCeeE
Q 004207          566 DGKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYSL  633 (768)
Q Consensus       566 dg~~LaSgs~D----g~I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~D------gtIrVWDl~t~~~~~  633 (768)
                      ++.+++.|+.+    ..+.+||..+.+-...  +........++.+  ++.+++.|+.+      ..+.+||+.+.....
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            66777777755    5688999887653322  2211222223333  56677777765      468999998765322


Q ss_pred             EEeecCCCCeEEEEEeCCCCeEEEEEeC---------CCcEEEEECCCCeeEEEEecCC--CeeEEEEecCCCEEEEEEc
Q 004207          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAAAI  702 (768)
Q Consensus       634 ~~~~~h~~~V~slafsp~g~~lLaSgs~---------Dg~I~iWDl~sg~~i~~~~~~~--~i~sl~fsp~~~~llags~  702 (768)
                      ..-......-.+++.. + ..+++.|+.         -..+.+||+.+.+-...-....  .-.+++.. ++..++.|+.
T Consensus       133 ~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~  209 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEA-N-GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQ  209 (306)
T ss_dssp             ECCCSSCCBSCEEEEE-T-TEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCE
T ss_pred             CCCCcCCcceeEEEEE-C-CEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCC
Confidence            1111111111122222 3 456666653         3458899998775443322111  11222222 3344445443


Q ss_pred             C-----CeEEEEECCCc
Q 004207          703 E-----NYISILDVETQ  714 (768)
Q Consensus       703 D-----g~I~IwD~~t~  714 (768)
                      +     ..|.+||+.+.
T Consensus       210 ~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          210 NGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             ETTEEBCCEEEEETTTT
T ss_pred             CCCCCCceEEEeeCCCC
Confidence            2     34566666654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.37  E-value=0.27  Score=50.84  Aligned_cols=145  Identities=8%  Similarity=0.091  Sum_probs=72.6

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCCeeE
Q 004207          566 DGKLLATGGHD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENPDYSL  633 (768)
Q Consensus       566 dg~~LaSgs~D-----g~I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~Dg-----tIrVWDl~t~~~~~  633 (768)
                      ++.+++.|+.+     ..+.+||..+.+-...  +........++.+  ++.+++.|+.++     .+.+||+.+.....
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            66777777754     3588899887653322  1111122223333  466777777653     57888988765322


Q ss_pred             EEeecCCCCeEEEEEeCCCCeEEEEEeCC-------CcEEEEECCCCeeEEEEecCC--CeeEEEEecCCCEEEEEEcC-
Q 004207          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAAAIE-  703 (768)
Q Consensus       634 ~~~~~h~~~V~slafsp~g~~lLaSgs~D-------g~I~iWDl~sg~~i~~~~~~~--~i~sl~fsp~~~~llags~D-  703 (768)
                      .........-.+++.. + ..+++.|+.+       ..+.+||+.+.+-...-....  ...+++.. ++..++.|+.+ 
T Consensus       139 ~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~  215 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGVV-G-GLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDG  215 (302)
T ss_dssp             ECCCSSCCBSCEEEEE-T-TEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSS
T ss_pred             cCCCCCcccCceEEEE-C-CEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCC
Confidence            1111111111222222 2 4566666542       358899998765443322111  11222222 34445555543 


Q ss_pred             ----CeEEEEECCCce
Q 004207          704 ----NYISILDVETQV  715 (768)
Q Consensus       704 ----g~I~IwD~~t~~  715 (768)
                          +.+.+||+.+..
T Consensus       216 ~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          216 PLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             SSBCCCEEEEETTTTE
T ss_pred             CcccceEEEEeCCCCC
Confidence                346667766543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.37  E-value=0.021  Score=67.61  Aligned_cols=159  Identities=9%  Similarity=-0.038  Sum_probs=98.0

Q ss_pred             eEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-C-CcEEEEECCCCCeeEE
Q 004207          558 VESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D-RTVRVWDTENPDYSLR  634 (768)
Q Consensus       558 I~sl~fSpd-g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~-D-gtIrVWDl~t~~~~~~  634 (768)
                      ...|++.+. ++++++-...+.|.++++........+.........|+++|.+.+|+.+.. . +.|.+++++.... ..
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~  533 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS  533 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CE
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eE
Confidence            456777754 444555456788999998765444433333345678899997655555443 2 6788887764332 12


Q ss_pred             EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEEE-EcCCeEEEEE
Q 004207          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAA-AIENYISILD  710 (768)
Q Consensus       635 ~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~llag-s~Dg~I~IwD  710 (768)
                      .....-.....|+|++++..|+++-...+.|.++|+........+..   ......|++..+  .|+++ ...+.|..+|
T Consensus       534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d  611 (699)
T 1n7d_A          534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSAN  611 (699)
T ss_dssp             ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEE
T ss_pred             EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEE
Confidence            22222345678999998888888877788999999874333222221   122445666554  44444 4567899999


Q ss_pred             CCCceEeee
Q 004207          711 VETQVCRLK  719 (768)
Q Consensus       711 ~~t~~~~~~  719 (768)
                      ..++.....
T Consensus       612 ~~~G~~~~~  620 (699)
T 1n7d_A          612 RLTGSDVNL  620 (699)
T ss_dssp             TTTEEEEEC
T ss_pred             ccCCCceEE
Confidence            877665443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.31  E-value=0.17  Score=52.27  Aligned_cols=145  Identities=8%  Similarity=0.098  Sum_probs=74.1

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCe-----EEEEeccCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCC
Q 004207          566 DGKLLATGGHD-----KKAVLWCTESFT-----VKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD  630 (768)
Q Consensus       566 dg~~LaSgs~D-----g~I~VWdl~t~~-----~~~tl~~h~~~V~sl~fspdg~~LaTgs~D-----gtIrVWDl~t~~  630 (768)
                      ++.+++.|+.+     ..+.+||..+.+     .+..+........++.+  ++.+++.|+.+     ..+.+||+.+..
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            56777777755     368999987755     22222222222223333  46667777654     368899988765


Q ss_pred             eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEecCCC--eeEEEEecCCCEEEEEEcC
Q 004207          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE  703 (768)
Q Consensus       631 ~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-----g~I~iWDl~sg~~i~~~~~~~~--i~sl~fsp~~~~llags~D  703 (768)
                      ............-.+++.. + ..+++.|+.+     ..+.+||+.+.+-...-.....  ..+++.. ++..++.|+.+
T Consensus       140 W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~  216 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVVA-S-GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-NDHIYVVGGFD  216 (301)
T ss_dssp             EEEEEECSSCCBSCEEEEE-T-TEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBC
T ss_pred             EEECCCCCCCcccceEEEE-C-CEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CCEEEEEeCCC
Confidence            4222111111111222222 3 4577777654     4688999987755433221111  1122222 33445555543


Q ss_pred             -----CeEEEEECCCce
Q 004207          704 -----NYISILDVETQV  715 (768)
Q Consensus       704 -----g~I~IwD~~t~~  715 (768)
                           +.|.+||+.+..
T Consensus       217 ~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          217 GTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             SSSBCCCEEEEETTTTE
T ss_pred             CCcccceEEEEeCCCCc
Confidence                 356677776654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.27  E-value=0.56  Score=50.58  Aligned_cols=153  Identities=10%  Similarity=0.027  Sum_probs=94.5

Q ss_pred             CCeEEEEEcC--CCC-EEEEEe-C--CCcEEEEECCCC--e--EEEEeccC-CCCEEEEEEcCCCCEEEEEeC-------
Q 004207          556 SKVESCHFSP--DGK-LLATGG-H--DKKAVLWCTESF--T--VKSTLEEH-TQWITDVRFSPSLSRLATSSA-------  617 (768)
Q Consensus       556 ~~I~sl~fSp--dg~-~LaSgs-~--Dg~I~VWdl~t~--~--~~~tl~~h-~~~V~sl~fspdg~~LaTgs~-------  617 (768)
                      -....|.+.+  ++. +|+++. .  +.+|-||+++..  .  .+.++.+. -...+++++.++|.++++...       
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~  191 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL  191 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence            3566677655  454 444443 2  457778776542  2  23344332 235789999999987777641       


Q ss_pred             ----------CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-Cee--EEEEecCCC
Q 004207          618 ----------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSC--AGVFKCQSG  684 (768)
Q Consensus       618 ----------DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~--i~~~~~~~~  684 (768)
                                .|.|..||.  ++  +..+...-...+.|+|+|+++.++++-+..+.|..||+.. ++.  ...+.....
T Consensus       192 ~~~e~~~~~~~g~vyr~d~--~~--~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~  267 (355)
T 3sre_A          192 KSWEMHLGLAWSFVTYYSP--ND--VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTL  267 (355)
T ss_dssp             HHHHHHTTCCCEEEEEECT--TC--CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSE
T ss_pred             ccchhhccCCccEEEEEEC--Ce--EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCC
Confidence                      234544544  33  2223333356789999999998888888889999999863 332  234444556


Q ss_pred             eeEEEEec-CCCEEEEEEcC-CeEEEEECC
Q 004207          685 ATQMRFQP-RLGRILAAAIE-NYISILDVE  712 (768)
Q Consensus       685 i~sl~fsp-~~~~llags~D-g~I~IwD~~  712 (768)
                      .-.+++.+ +|+..+++..+ +.|..||..
T Consensus       268 PDGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          268 VDNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             CceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence            77899999 47766656544 345555554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.23  E-value=0.22  Score=54.87  Aligned_cols=149  Identities=13%  Similarity=0.118  Sum_probs=92.5

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCeeEEEeecC----CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe--------
Q 004207          607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--------  674 (768)
Q Consensus       607 pdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h----~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~--------  674 (768)
                      .++..++.+ .++.||..++.... ..+.+...    -..|..+..+|+|..+.+.|  +..|.|..+..+.        
T Consensus        30 ~n~t~i~~a-~~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g--~~~V~Vv~LP~~~~~~~~~~~  105 (452)
T 3pbp_A           30 QNGTRIVFI-QDNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN--DNEIFVMEVPWGYSNVEDVSI  105 (452)
T ss_dssp             TTTTEEEEE-ETTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEEC--SSEEEEEECCTTCSCCCCHHH
T ss_pred             cCCCEEEEE-ECCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEec--CCeEEEEEecCccccCccccc
Confidence            344555554 34677777776332 13333322    23578899999988554443  5689998887321        


Q ss_pred             ----eEEEEec-------CCCeeEEEEecCC---CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCC
Q 004207          675 ----CAGVFKC-------QSGATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD  740 (768)
Q Consensus       675 ----~i~~~~~-------~~~i~sl~fsp~~---~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~  740 (768)
                          ..+.+..       ..+|..+.|||-+   ..|++-..|+.|++||+.......    . ..+.. ...+.+....
T Consensus       106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P----~-~L~k~-~~~fg~d~~~  179 (452)
T 3pbp_A          106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKP----I-VLNKP-NNSFGLDARV  179 (452)
T ss_dssp             HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCC----E-EESCC-CSEEESCSSC
T ss_pred             ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCC----c-chhcc-ccccCCCccc
Confidence                1223332       3569999999954   579999999999999998622111    1 11111 1223444556


Q ss_pred             CCeeEEEEeCCCCEEEEEE--CCCcEE
Q 004207          741 KLVSSLAASTVNGMVASAS--HDKCVK  765 (768)
Q Consensus       741 ~~I~sla~spdg~~LaSgs--~DG~V~  765 (768)
                      ..|.+++|..++-.|+..+  .+|-|+
T Consensus       180 ~ev~S~~Fg~~~lTLYvl~~t~~GDIY  206 (452)
T 3pbp_A          180 NDITDLEFSKDGLTLYCLNTTEGGDIF  206 (452)
T ss_dssp             CCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred             ceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence            7899999999876666654  778775

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.18  E-value=0.083  Score=59.66  Aligned_cols=162  Identities=11%  Similarity=0.090  Sum_probs=92.0

Q ss_pred             CEEEEEEcC-CCCEEEEEeC-CCcEEEEECCCCCeeEEEeecC----CCCeEEEEE-------eCCCCeEEEEEeCCC--
Q 004207          599 WITDVRFSP-SLSRLATSSA-DRTVRVWDTENPDYSLRTFTGH----STTVMSLDF-------HPSKEDLLCSCDNNS--  663 (768)
Q Consensus       599 ~V~sl~fsp-dg~~LaTgs~-DgtIrVWDl~t~~~~~~~~~~h----~~~V~slaf-------sp~g~~lLaSgs~Dg--  663 (768)
                      ....|+|+| +...|+.+.. .+.|++.|++.+..  ..+...    ......|+|       ++++..++++...++  
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v--~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~  217 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML--SSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG  217 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE--EEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE--EEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence            467899998 3445555544 46788899887553  333221    235899999       999987777766542  


Q ss_pred             ----cEEEEECCC-CeeE-----EEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECC-------CceEeeecceeEE
Q 004207          664 ----EIRYWSINN-GSCA-----GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVE-------TQVCRLKLQTLEL  725 (768)
Q Consensus       664 ----~I~iWDl~s-g~~i-----~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~-------t~~~~~~~~~I~i  725 (768)
                          .|.+++... +...     ..+........++++|++++|+++. .++.|..||+.       ++..-....   .
T Consensus       218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~---~  294 (496)
T 3kya_A          218 DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV---K  294 (496)
T ss_dssp             GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG---G
T ss_pred             ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc---c
Confidence                266776443 2221     2222223456788899767766655 56779999987       333200000   0


Q ss_pred             eecC-CCceEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEE
Q 004207          726 WNMT-ENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKI  766 (768)
Q Consensus       726 wd~~-~~~~~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~I  766 (768)
                      |... ...+... +.....+.|+|+|++++|+.+. ....|+.
T Consensus       295 ~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k  336 (496)
T 3kya_A          295 NNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMR  336 (496)
T ss_dssp             GCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence            0000 0011111 2234467899999998655554 3455554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.08  E-value=0.27  Score=54.09  Aligned_cols=142  Identities=13%  Similarity=0.084  Sum_probs=93.3

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEeccC----CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC----------
Q 004207          565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEH----TQWITDVRFSPSLSRLATSSADRTVRVWDTENPD----------  630 (768)
Q Consensus       565 pdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h----~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~----------  630 (768)
                      .+|.-++.+- ++.||..++......+.+...    -..|..+..+|+|++||..+ +.+|.|..+..+.          
T Consensus        30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred             cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccc
Confidence            3555555553 467888887644333344322    22578899999999999885 5579998886321          


Q ss_pred             -eeEEEeec------CCCCeEEEEEeCCCCe--EEEEEeCCCcEEEEECCCC--eeEEEEec----------CCCeeEEE
Q 004207          631 -YSLRTFTG------HSTTVMSLDFHPSKED--LLCSCDNNSEIRYWSINNG--SCAGVFKC----------QSGATQMR  689 (768)
Q Consensus       631 -~~~~~~~~------h~~~V~slafsp~g~~--lLaSgs~Dg~I~iWDl~sg--~~i~~~~~----------~~~i~sl~  689 (768)
                       ...+.+.-      ...+|..+.|||-+..  .|++-..|+.|++||+...  ++. .++.          ...|.+++
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence             11223322      2467999999997543  5667778999999999852  222 3321          14588999


Q ss_pred             EecCCCEEEEEE--cCCeEEEE
Q 004207          690 FQPRLGRILAAA--IENYISIL  709 (768)
Q Consensus       690 fsp~~~~llags--~Dg~I~Iw  709 (768)
                      |..++-.|++.+  .+|.|+-+
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEE
T ss_pred             EcCCCcEEEEEecCCCCCEEEE
Confidence            999776787766  67877654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.02  E-value=0.23  Score=53.47  Aligned_cols=145  Identities=12%  Similarity=0.074  Sum_probs=82.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEec---cCCCCEEEEEEcCC---CCEEEEEeC----C----C
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE---EHTQWITDVRFSPS---LSRLATSSA----D----R  619 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~-~~~tl~---~h~~~V~sl~fspd---g~~LaTgs~----D----g  619 (768)
                      -....+++|.|||++++ +..+|.|++++. +++ .+..+.   ........|+|+|+   +..|+++..    +    .
T Consensus        28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            34578999999998555 456699999974 444 222221   12346889999997   555555433    3    5


Q ss_pred             cEEEEECCCCC------e-eEEEeec-CCCCeEEEEEeCCCCeEEEEEeC------------CCcEEEEECCCCee----
Q 004207          620 TVRVWDTENPD------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDN------------NSEIRYWSINNGSC----  675 (768)
Q Consensus       620 tIrVWDl~t~~------~-~~~~~~~-h~~~V~slafsp~g~~lLaSgs~------------Dg~I~iWDl~sg~~----  675 (768)
                      .|..|+.....      . .+..+.. .......|+|.|+|..++..++.            .|.|.-+|.. ++.    
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~n  184 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADN  184 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCC
Confidence            67778776431      1 1111221 11234679999998744433321            2456656654 220    


Q ss_pred             ----EEEE-ecCCCeeEEEEecCCCEEEEEEc
Q 004207          676 ----AGVF-KCQSGATQMRFQPRLGRILAAAI  702 (768)
Q Consensus       676 ----i~~~-~~~~~i~sl~fsp~~~~llags~  702 (768)
                          ...+ ........++|+|+.+.|+++..
T Consensus       185 pf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~  216 (354)
T 3a9g_A          185 PFPNSPIWSYGHRNPQGIDWHRASGVMVATEH  216 (354)
T ss_dssp             SSTTCCEEEECCSCCCEEEECTTTCCEEEEEC
T ss_pred             CCCCCcEEEEccCCcceEEEeCCCCCEEEEec
Confidence                1112 12345678999995555666554

>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A

Probab=95.89  E-value=0.007  Score=67.42  Aligned_cols=13  Identities=15%  Similarity=0.378  Sum_probs=6.2

Q ss_pred             hhhhHHHHHHhhh
Q 004207           53 FEWWSVFWDIFIA   65 (768)
Q Consensus        53 ~eww~~FWdlf~A   65 (768)
                      .+.|.++.+.+..
T Consensus       337 ~~~~~~~~~~~~~  349 (449)
T 3iot_A          337 SAFWYAVRTAVIN  349 (449)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3445555554443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.85  E-value=0.43  Score=49.13  Aligned_cols=143  Identities=12%  Similarity=0.059  Sum_probs=73.0

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEE--EEeccCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCeeE
Q 004207          566 DGKLLATGGHD-----KKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSL  633 (768)
Q Consensus       566 dg~~LaSgs~D-----g~I~VWdl~t~~~~--~tl~~h~~~V~sl~fspdg~~LaTgs~D-----gtIrVWDl~t~~~~~  633 (768)
                      ++++++.|+.+     ..+.+||..+.+-.  ..+........++.+  ++++++.|+.+     ..+.+||+.+.....
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            67777777654     35888998775433  222222222223333  56677777654     468999998765422


Q ss_pred             EE-eecCCCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEecCC--CeeEEEEecCCCEEEEEEcC--
Q 004207          634 RT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAAAIE--  703 (768)
Q Consensus       634 ~~-~~~h~~~V~slafsp~g~~lLaSgs~D-----g~I~iWDl~sg~~i~~~~~~~--~i~sl~fsp~~~~llags~D--  703 (768)
                      .. .........++.+   ++.+++.|+.+     ..|.+||+.+.+-...-....  ...+++.. ++..++.|+.+  
T Consensus       190 ~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~  265 (301)
T 2vpj_A          190 VTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL-RGRLYAIAGYDGN  265 (301)
T ss_dssp             ECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCSS
T ss_pred             CCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE-CCEEEEEcCcCCC
Confidence            11 1111111122222   34577777654     468999998776543322111  11122222 34445555544  


Q ss_pred             ---CeEEEEECCCc
Q 004207          704 ---NYISILDVETQ  714 (768)
Q Consensus       704 ---g~I~IwD~~t~  714 (768)
                         ..|.+||+++.
T Consensus       266 ~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          266 SLLSSIECYDPIID  279 (301)
T ss_dssp             SBEEEEEEEETTTT
T ss_pred             cccccEEEEcCCCC
Confidence               24556666554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.84  E-value=0.48  Score=59.13  Aligned_cols=170  Identities=10%  Similarity=0.077  Sum_probs=98.8

Q ss_pred             cEEEEECCCCeEEEEecc-CCCCEEEEEE---cCC-CCEEEEEe----------CCCcEEEEECCCCCeeEEEeecCCCC
Q 004207          578 KAVLWCTESFTVKSTLEE-HTQWITDVRF---SPS-LSRLATSS----------ADRTVRVWDTENPDYSLRTFTGHSTT  642 (768)
Q Consensus       578 ~I~VWdl~t~~~~~tl~~-h~~~V~sl~f---spd-g~~LaTgs----------~DgtIrVWDl~t~~~~~~~~~~h~~~  642 (768)
                      .|++.|-.+++.+..+.- ....+.|++.   ..+ ..+|++|.          ..|.|++|++...+..+......+++
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~  887 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA  887 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence            467777777776655532 2334555553   322 46888876          34789999997544333333445788


Q ss_pred             eEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE-EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc
Q 004207          643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  721 (768)
Q Consensus       643 V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~-~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~  721 (768)
                      |++|+--.  .+++++.  ..+|++|++...+.++ .......+..+.....++++++|..-..|.++.           
T Consensus       888 v~al~~~~--g~Lla~i--g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~-----------  952 (1158)
T 3ei3_A          888 VYSMVEFN--GKLLASI--NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLA-----------  952 (1158)
T ss_dssp             EEEEEEET--TEEEEEE--TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEE-----------
T ss_pred             CEEEeeeC--CEEEEEc--CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEE-----------
Confidence            99987542  3455444  4689999998655433 111122233333333456777777655555433           


Q ss_pred             eeEEeecCCCceEEec--cCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          722 TLELWNMTENKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       722 ~I~iwd~~~~~~~~l~--~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                          |+...++...+.  .+...++++.+-.+ ..++.+..+|.|.++
T Consensus       953 ----y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl  995 (1158)
T 3ei3_A          953 ----YKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVC  995 (1158)
T ss_dssp             ----EETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEE
T ss_pred             ----EEcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEE
Confidence                222223333222  34556888887654 467778889988775

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.75  E-value=0.53  Score=49.46  Aligned_cols=140  Identities=7%  Similarity=0.013  Sum_probs=85.2

Q ss_pred             EEEcCCCCEEEEEeCC--------------CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe--CCC--cEE
Q 004207          561 CHFSPDGKLLATGGHD--------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--ADR--TVR  622 (768)
Q Consensus       561 l~fSpdg~~LaSgs~D--------------g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs--~Dg--tIr  622 (768)
                      --+++++++|+-+...              ..|+..+++..+... +..  ..  +..|++++++|+-..  .++  .|+
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--DP--CIYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--SC--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--CC--ccEEEEeCCEEEEEeecCCCCceEE
Confidence            4557788887766542              357777777655332 221  11  236777888888776  333  555


Q ss_pred             EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc
Q 004207          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI  702 (768)
Q Consensus       623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~  702 (768)
                      .-+++...  ...+..+..    ..|+++++.++.+......|.+.++..+.....+.  +... ..++|++++|+....
T Consensus       133 ~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~  203 (302)
T 3s25_A          133 RIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDV  203 (302)
T ss_dssp             EEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEG
T ss_pred             EEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEc
Confidence            55665433  344443432    34577788888776657789999988766544443  2332 346688999888775


Q ss_pred             C--CeEEEEECCCc
Q 004207          703 E--NYISILDVETQ  714 (768)
Q Consensus       703 D--g~I~IwD~~t~  714 (768)
                      +  ..|..-++...
T Consensus       204 ~~~~~I~~~~ldG~  217 (302)
T 3s25_A          204 NRDNAIVHVNINNP  217 (302)
T ss_dssp             GGTTEEEEECSSSC
T ss_pred             CCCcEEEEEECCCC
Confidence            4  35666666554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.72  E-value=0.43  Score=49.22  Aligned_cols=143  Identities=10%  Similarity=0.079  Sum_probs=71.5

Q ss_pred             CCCEEEEEeCCC-----cEEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeCC-------CcEEEEECCCCCe
Q 004207          566 DGKLLATGGHDK-----KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-------RTVRVWDTENPDY  631 (768)
Q Consensus       566 dg~~LaSgs~Dg-----~I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~D-------gtIrVWDl~t~~~  631 (768)
                      ++++++.|+.++     .+.+||..+.+-...  +........++.+  ++++++.|+.+       ..+.+||+.+...
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            677777777653     477888877553322  1111112222333  45666666543       3588999987653


Q ss_pred             eEE-EeecCCCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEecCC--CeeEEEEecCCCEEEEEEcC
Q 004207          632 SLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAAAIE  703 (768)
Q Consensus       632 ~~~-~~~~h~~~V~slafsp~g~~lLaSgs~D-----g~I~iWDl~sg~~i~~~~~~~--~i~sl~fsp~~~~llags~D  703 (768)
                      ... ......... +++..  ++.+++.|+.+     ..|.+||+.+.+-...-....  .-..++.. ++..++.|+.+
T Consensus       186 ~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~i~v~GG~~  261 (302)
T 2xn4_A          186 TYIAEMSTRRSGA-GVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV-NGLLYVVGGDD  261 (302)
T ss_dssp             EEECCCSSCCBSC-EEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBC
T ss_pred             EECCCCccccccc-cEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE-CCEEEEECCcC
Confidence            221 111111112 22222  24577777654     468899998765443322111  11122222 34455555544


Q ss_pred             C-----eEEEEECCCc
Q 004207          704 N-----YISILDVETQ  714 (768)
Q Consensus       704 g-----~I~IwD~~t~  714 (768)
                      +     .|.+||+.+.
T Consensus       262 ~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          262 GSCNLASVEYYNPTTD  277 (302)
T ss_dssp             SSSBCCCEEEEETTTT
T ss_pred             CCcccccEEEEcCCCC
Confidence            2     3566666554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.72  E-value=0.52  Score=50.68  Aligned_cols=150  Identities=11%  Similarity=0.113  Sum_probs=85.1

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEe----ccCCCCEEEEEEcCC---CCEEEEE---eC
Q 004207          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL----EEHTQWITDVRFSPS---LSRLATS---SA  617 (768)
Q Consensus       550 ~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~--~tl----~~h~~~V~sl~fspd---g~~LaTg---s~  617 (768)
                      .+...-..-..|+|.|||.+|++--..|.|++++..+++..  ..+    .........|+|+|+   +..|+..   ..
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            33344455789999999997777655899999986655432  222    123456899999995   3444443   23


Q ss_pred             CCcEEEEECCCC----------CeeEEEee-cCCCCeEEEEEeCCCCeEEEEEe------------CCCcEEEEECCCCe
Q 004207          618 DRTVRVWDTENP----------DYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCD------------NNSEIRYWSINNGS  674 (768)
Q Consensus       618 DgtIrVWDl~t~----------~~~~~~~~-~h~~~V~slafsp~g~~lLaSgs------------~Dg~I~iWDl~sg~  674 (768)
                      ++.|.-|.+...          +..+..+. ........|.|.|+|..++.+|+            ..|.|.-++.. ++
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d-G~  184 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD-GE  184 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-SS
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-CC
Confidence            456666665541          11112221 11223567999999864443342            13455555544 22


Q ss_pred             e--------EEEEe-cCCCeeEEEEecCCCEEEEEE
Q 004207          675 C--------AGVFK-CQSGATQMRFQPRLGRILAAA  701 (768)
Q Consensus       675 ~--------i~~~~-~~~~i~sl~fsp~~~~llags  701 (768)
                      .        ...+. .......++|+|++. |+++-
T Consensus       185 ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d  219 (347)
T 3das_A          185 PAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASE  219 (347)
T ss_dssp             BCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEE
T ss_pred             ccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEe
Confidence            0        11222 234567899999754 55544

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.71  E-value=1.9  Score=47.60  Aligned_cols=157  Identities=10%  Similarity=0.169  Sum_probs=101.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC---CCEEEEEeCC---CcEE
Q 004207          556 SKVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSAD---RTVR  622 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~-------Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd---g~~LaTgs~D---gtIr  622 (768)
                      ..|..-..+++.+|++..+-       .|.+.+|.++. +.-..+++|......+.+.-+   ..+|+.+...   +.++
T Consensus       151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLh  229 (494)
T 1bpo_A          151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH  229 (494)
T ss_dssp             CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEE
T ss_pred             ceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEE
Confidence            45777788889998764432       46788999875 555678888766555544322   2245555443   7899


Q ss_pred             EEECCCC--------CeeEEEee---cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEE
Q 004207          623 VWDTENP--------DYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF  690 (768)
Q Consensus       623 VWDl~t~--------~~~~~~~~---~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~f  690 (768)
                      |-++...        +..+..+.   .-.+...++..++.-. +++.-+.-|.|++||++++.++..-.. ...|...+.
T Consensus       230 i~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~  308 (494)
T 1bpo_A          230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP  308 (494)
T ss_dssp             EEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             EEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEecccceeeeeecccCCceEEecc
Confidence            9998653        11111111   1234566788887755 566777899999999999999887664 444555555


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCc
Q 004207          691 QPRLGRILAAAIENYISILDVETQ  714 (768)
Q Consensus       691 sp~~~~llags~Dg~I~IwD~~t~  714 (768)
                      +...+-+++....|.|.-..++..
T Consensus       309 ~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          309 HEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             ETTTTEEEEEETTCEEEEEEECTT
T ss_pred             cCCCCcEEEEccCceEEEEEEccc
Confidence            555566777778887766655544

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.59  E-value=0.015  Score=62.53  Aligned_cols=143  Identities=8%  Similarity=0.006  Sum_probs=84.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccC-CCCEEEEEEc--C-CCCEEEEE-eCCCcEEEEECCCCCeeEEEeec---C
Q 004207          568 KLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFS--P-SLSRLATS-SADRTVRVWDTENPDYSLRTFTG---H  639 (768)
Q Consensus       568 ~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h-~~~V~sl~fs--p-dg~~LaTg-s~DgtIrVWDl~t~~~~~~~~~~---h  639 (768)
                      .++++++.||.|.-+|.++|+.+.++... ..++....-.  + ++..++.. +.||.|..+|..++......-..   .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            36888999999999999999999998654 1222221110  1 22333333 58999999998876432211111   1


Q ss_pred             CCCeEE---EEE-eC---CCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCe--------eEEEEe-----cCCCEEEE
Q 004207          640 STTVMS---LDF-HP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA--------TQMRFQ-----PRLGRILA  699 (768)
Q Consensus       640 ~~~V~s---laf-sp---~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i--------~sl~fs-----p~~~~lla  699 (768)
                      ..++..   ... .+   .....+++|+.+|.+...|+++|+.+..+......        .|....     ..+..++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            122221   000 00   01346678999999999999999999998754321        111111     12356777


Q ss_pred             EEcCCeEEEEE
Q 004207          700 AAIENYISILD  710 (768)
Q Consensus       700 gs~Dg~I~IwD  710 (768)
                      +..+..|.+.+
T Consensus       171 g~~~y~v~~~~  181 (339)
T 2be1_A          171 GKTIFELGIHS  181 (339)
T ss_dssp             EEEEEECEECC
T ss_pred             ecceEEEEEEC
Confidence            77777777776

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.47  E-value=0.6  Score=52.02  Aligned_cols=105  Identities=17%  Similarity=0.165  Sum_probs=62.1

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEecc------CCCCEEEEEEcCC---CCEEEEEeC-------
Q 004207          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEE------HTQWITDVRFSPS---LSRLATSSA-------  617 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~--~tl~~------h~~~V~sl~fspd---g~~LaTgs~-------  617 (768)
                      ....+|+|.|+|+++++-...+.|++++..+++..  ..+..      ....+..|+|+|+   +..|+.+..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            35779999999997776544457888876555432  22321      2356789999995   555554432       


Q ss_pred             ------CCcEEEEECCCCC-------eeEEEee-cCCCCeEEEEEeCCCCeEEEEEe
Q 004207          618 ------DRTVRVWDTENPD-------YSLRTFT-GHSTTVMSLDFHPSKEDLLCSCD  660 (768)
Q Consensus       618 ------DgtIrVWDl~t~~-------~~~~~~~-~h~~~V~slafsp~g~~lLaSgs  660 (768)
                            ...|.-|++....       ..+..+. ........|+|.|+|..++++|+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                  2356666654321       1111121 11234789999999975555553

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.44  E-value=1.6  Score=45.34  Aligned_cols=150  Identities=8%  Similarity=0.008  Sum_probs=72.9

Q ss_pred             EEEEEcCCCCEEEEEeC----C-------CcEEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeCC-------
Q 004207          559 ESCHFSPDGKLLATGGH----D-------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-------  618 (768)
Q Consensus       559 ~sl~fSpdg~~LaSgs~----D-------g~I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~D-------  618 (768)
                      ...+...++.+++.|+.    +       ..+.+||..+.+-...  +.........+.+  ++.+++.|+.+       
T Consensus        38 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~  115 (315)
T 4asc_A           38 HVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERC  115 (315)
T ss_dssp             EEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCB
T ss_pred             ceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcc
Confidence            33344457888888873    1       1277888877653221  1111111122222  45666666632       


Q ss_pred             -CcEEEEECCCCCeeEE-EeecCCCCeEEEEEeCCCCeEEEEEeC-C-----CcEEEEECCCCeeEEEEecC--CCeeEE
Q 004207          619 -RTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDN-N-----SEIRYWSINNGSCAGVFKCQ--SGATQM  688 (768)
Q Consensus       619 -gtIrVWDl~t~~~~~~-~~~~h~~~V~slafsp~g~~lLaSgs~-D-----g~I~iWDl~sg~~i~~~~~~--~~i~sl  688 (768)
                       ..+.+||+.+.+.... .+...... .+++.. + ..+++.|+. +     ..+.+||+.+.+-...-...  ....++
T Consensus       116 ~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  192 (315)
T 4asc_A          116 LDSVMCYDRLSFKWGESDPLPYVVYG-HTVLSH-M-DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGA  192 (315)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-T-TEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred             cceEEEECCCCCcEeECCCCCCcccc-eeEEEE-C-CEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEE
Confidence             3689999987643211 11111111 122222 2 457777765 2     46899999876543322111  111222


Q ss_pred             EEecCCCEEEEEEcCC-----eEEEEECCCc
Q 004207          689 RFQPRLGRILAAAIEN-----YISILDVETQ  714 (768)
Q Consensus       689 ~fsp~~~~llags~Dg-----~I~IwD~~t~  714 (768)
                      +.. ++..++.|+.++     .+.+||+.+.
T Consensus       193 ~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          193 TVH-DGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             EEE-TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             EEE-CCEEEEEeccCCCCccceEEEEECCCC
Confidence            222 445566666543     3556666554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.42  E-value=3.5  Score=44.11  Aligned_cols=188  Identities=11%  Similarity=0.106  Sum_probs=92.1

Q ss_pred             CCCeEEEEEcCC---CCEEEEE-e--CCCcEEEEECCC----------CeEEE-Eec-cCCCCEEEEEEcCCCCEEEEEe
Q 004207          555 TSKVESCHFSPD---GKLLATG-G--HDKKAVLWCTES----------FTVKS-TLE-EHTQWITDVRFSPSLSRLATSS  616 (768)
Q Consensus       555 ~~~I~sl~fSpd---g~~LaSg-s--~Dg~I~VWdl~t----------~~~~~-tl~-~h~~~V~sl~fspdg~~LaTgs  616 (768)
                      ......|+|+|+   +.+|+++ +  .+..|.-|.+..          .+.+. .+. ........|+|.||+.++++.+
T Consensus        79 ~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A           79 EGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             TBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             CCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            456889999995   3444432 2  345666666543          12222 222 1112346799999998777754


Q ss_pred             C-------------CCcEEEEECCCC--------CeeEEEeecCCCCeEEEEEeCCCCeEEEEE-eCCCcEEEEECCCCe
Q 004207          617 A-------------DRTVRVWDTENP--------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGS  674 (768)
Q Consensus       617 ~-------------DgtIrVWDl~t~--------~~~~~~~~~h~~~V~slafsp~g~~lLaSg-s~Dg~I~iWDl~sg~  674 (768)
                      .             .|.|.-.+.+..        .. ...-.+|. ....++|+|++. ++++- +.|+.-.|--+..+.
T Consensus       159 d~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~-~i~a~G~R-Np~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~  235 (347)
T 3das_A          159 ESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGS-PVYSYGHR-NVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGD  235 (347)
T ss_dssp             CTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTC-CEEEBCCS-BCCEEEECTTCC-EEEEECCSSSCEEEEEECTTC
T ss_pred             CCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCC-eEEeeCCC-CcceEEECCCCC-EEEEecCCCCCceeeEEcCCC
Confidence            3             244444454421        11 12223454 466899999865 44332 233322222222221


Q ss_pred             ------------------eEEEEecC-CCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceE
Q 004207          675 ------------------CAGVFKCQ-SGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTL  734 (768)
Q Consensus       675 ------------------~i~~~~~~-~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~  734 (768)
                                        .+..+... .....++|..  +.++.+. ....|..+.+......            .....
T Consensus       236 nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l~~~~l~~v~~~~~~~~------------~~~e~  301 (347)
T 3das_A          236 NYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGLRGERLWRIPLKGTAAA------------ADPQA  301 (347)
T ss_dssp             BCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEESTTCSEEEEEEETTEES------------SCCEE
T ss_pred             EecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--CceeeccccCCEEEEEEecCCcee------------cceEE
Confidence                              11222211 2345566653  2333333 3344444444332110            00011


Q ss_pred             EeccCCCCeeEEEEeCCCCEEEEEE
Q 004207          735 TLSAHDKLVSSLAASTVNGMVASAS  759 (768)
Q Consensus       735 ~l~~H~~~I~sla~spdg~~LaSgs  759 (768)
                      .+.+....+..|+..|||.++++.+
T Consensus       302 ~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          302 FLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             ESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             eecCCCCCccEEEECCCCcEEEEEc
Confidence            2223446799999999998766654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.37  E-value=3  Score=49.11  Aligned_cols=153  Identities=8%  Similarity=-0.004  Sum_probs=91.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-c-----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004207          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-E-----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~-~-----h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~  629 (768)
                      ..|.++.-..+|.+.+ |+ ++-|.+||..+++...... .     ....|.++....++. |..|+..+-|.++|..+.
T Consensus       373 ~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~  449 (758)
T 3ott_A          373 NRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKL  449 (758)
T ss_dssp             SCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHH
T ss_pred             CceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEccccc
Confidence            4589998887887544 44 4569999988876543221 1     234588888877765 556777667888886521


Q ss_pred             -----CeeE--EEeec----CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCeeEEEEecCC
Q 004207          630 -----DYSL--RTFTG----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRFQPRL  694 (768)
Q Consensus       630 -----~~~~--~~~~~----h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~----~~~i~sl~fsp~~  694 (768)
                           ....  ..+..    ....|.+|...++|. +.+.++..+-|..||..+++.......    ...+.++....++
T Consensus       450 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g  528 (758)
T 3ott_A          450 MQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGN-VWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDG  528 (758)
T ss_dssp             HHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSC-EEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTS
T ss_pred             cccCCcceecccccccccccccceeeeEEEcCCCC-EEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCC
Confidence                 1111  11111    123588998888876 443233345688899987765543211    2346677777665


Q ss_pred             CEEEEEEcCCeEEEEECCCc
Q 004207          695 GRILAAAIENYISILDVETQ  714 (768)
Q Consensus       695 ~~llags~Dg~I~IwD~~t~  714 (768)
                      . |..++. +.|..||..+.
T Consensus       529 ~-lWigt~-~Gl~~~~~~~~  546 (758)
T 3ott_A          529 L-LWVGFH-GGVMRINPKDE  546 (758)
T ss_dssp             C-EEEEET-TEEEEECC--C
T ss_pred             C-EEEEec-CceEEEecCCC
Confidence            4 555555 45888887554

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.31  E-value=0.72  Score=47.83  Aligned_cols=144  Identities=13%  Similarity=0.084  Sum_probs=72.1

Q ss_pred             CCCEEEEEeC----C-----CcEEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 004207          566 DGKLLATGGH----D-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENP  629 (768)
Q Consensus       566 dg~~LaSgs~----D-----g~I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~D-----gtIrVWDl~t~  629 (768)
                      ++.+++.|+.    +     ..+.+||..+.+-...  +........++.+  ++.+++.|+.+     ..+.+||+.+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            5666777665    2     4688899877653321  1111122223333  56666766643     36889998875


Q ss_pred             CeeEE-EeecCCCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEE
Q 004207          630 DYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAA  701 (768)
Q Consensus       630 ~~~~~-~~~~h~~~V~slafsp~g~~lLaSgs~D-----g~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags  701 (768)
                      ..... .+........++.+   +..+++.|+.+     ..+.+||+.+.+-...-..  .....+++.. ++..++.|+
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG  223 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGG  223 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred             eEeECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeC
Confidence            53211 11111111222222   34577777654     4688999987654332111  1111222222 344455555


Q ss_pred             cC-----CeEEEEECCCce
Q 004207          702 IE-----NYISILDVETQV  715 (768)
Q Consensus       702 ~D-----g~I~IwD~~t~~  715 (768)
                      .+     ..+.+||+.+..
T Consensus       224 ~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          224 YDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             BCSSSBCCCEEEEETTTTE
T ss_pred             CCCCCccceEEEEeCCCCc
Confidence            43     446777776653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.25  E-value=2  Score=50.57  Aligned_cols=149  Identities=7%  Similarity=0.031  Sum_probs=90.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 004207          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~  635 (768)
                      ..|.++....+| .|.+|+.+| +.+||..+.+...........|.++... ++ .|..++.+ .|..||..+...  ..
T Consensus        63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~~--~~  135 (758)
T 3ott_A           63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRKL--TS  135 (758)
T ss_dssp             SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCCE--EE
T ss_pred             ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCeE--EE
Confidence            468888877666 455566555 8899988765432111122357777543 44 56666666 588899876553  22


Q ss_pred             ee-----cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec------CCCeeEEEEecCCCEEEEEEcCC
Q 004207          636 FT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAIEN  704 (768)
Q Consensus       636 ~~-----~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~------~~~i~sl~fsp~~~~llags~Dg  704 (768)
                      +.     -....|.++....++...+  ++. +-|..||..++........      ...|.++....+++.|.+++. +
T Consensus       136 ~~~~~~~l~~~~i~~i~~d~~g~lWi--gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~  211 (758)
T 3ott_A          136 FDTRRNGLPNNTIYSIIRTKDNQIYV--GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-G  211 (758)
T ss_dssp             ECHHHHCCSCSCEEEEEECTTCCEEE--EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-E
T ss_pred             eccCCCCcCCCeEEEEEEcCCCCEEE--EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-C
Confidence            21     1134688888887766333  443 3578889877654322111      123777877777776666664 5


Q ss_pred             eEEEEECCCce
Q 004207          705 YISILDVETQV  715 (768)
Q Consensus       705 ~I~IwD~~t~~  715 (768)
                      .|..||..+..
T Consensus       212 Gl~~~~~~~~~  222 (758)
T 3ott_A          212 YLFQYFPSTGQ  222 (758)
T ss_dssp             EEEEEETTTTE
T ss_pred             CCeEEcCCCCe
Confidence            68888887654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.23  E-value=0.68  Score=47.80  Aligned_cols=145  Identities=12%  Similarity=0.081  Sum_probs=73.2

Q ss_pred             CCCEEEEEeCC------CcEEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEECCC
Q 004207          566 DGKLLATGGHD------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSA---------DRTVRVWDTEN  628 (768)
Q Consensus       566 dg~~LaSgs~D------g~I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~---------DgtIrVWDl~t  628 (768)
                      ++++++.|+.+      ..+.+||..+.+-...  +........++.+  ++++++.|+.         -..+.+||+.+
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence            67777777765      4588999887653322  1111112222333  4566666653         34588999987


Q ss_pred             CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEecC--CCeeEEEEecCCCEEEEEE
Q 004207          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAA  701 (768)
Q Consensus       629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-----g~I~iWDl~sg~~i~~~~~~--~~i~sl~fsp~~~~llags  701 (768)
                      .......-......-.+++.. + ..+++.|+.+     ..|.+||+.+.+-...-...  ..-..++.. ++..++.|+
T Consensus       179 ~~W~~~~~~p~~r~~~~~~~~-~-~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG  255 (306)
T 3ii7_A          179 ETWTELCPMIEARKNHGLVFV-K-DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-GSIVYVLAG  255 (306)
T ss_dssp             TEEEEECCCSSCCBSCEEEEE-T-TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-TTEEEEEEC
T ss_pred             CeEEECCCccchhhcceEEEE-C-CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-CCEEEEEeC
Confidence            653221111111111222222 3 4577776643     46889999876543321111  111122222 344555665


Q ss_pred             cC-----CeEEEEECCCce
Q 004207          702 IE-----NYISILDVETQV  715 (768)
Q Consensus       702 ~D-----g~I~IwD~~t~~  715 (768)
                      .+     +.|.+||+.+..
T Consensus       256 ~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          256 FQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             BCSSSBCCEEEEEETTTTE
T ss_pred             cCCCeeeeeEEEEcCCCCe
Confidence            43     456677776654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.17  E-value=1  Score=50.22  Aligned_cols=104  Identities=12%  Similarity=0.114  Sum_probs=61.9

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee-EEEeec------CCCCeEEEEEeCC---CCeEEEEEeC------
Q 004207          598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTG------HSTTVMSLDFHPS---KEDLLCSCDN------  661 (768)
Q Consensus       598 ~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~-~~~~~~------h~~~V~slafsp~---g~~lLaSgs~------  661 (768)
                      ...+.|+|.|+++++++-...+.|++++..++... +..+..      ....+..|+|+|+   +..++++-+.      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            45689999999987776544457888887555432 222211      2356779999996   5656655542      


Q ss_pred             ------CCcEEEEECCCC--e-----eEE-EEec--CCCeeEEEEecCCCEEEEEE
Q 004207          662 ------NSEIRYWSINNG--S-----CAG-VFKC--QSGATQMRFQPRLGRILAAA  701 (768)
Q Consensus       662 ------Dg~I~iWDl~sg--~-----~i~-~~~~--~~~i~sl~fsp~~~~llags  701 (768)
                            ...|.-|++..+  .     .+. .+..  .+....|+|.|++..+++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                  234555655322  1     111 1221  24478899999987655544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.79  E-value=1.3  Score=46.83  Aligned_cols=51  Identities=12%  Similarity=0.050  Sum_probs=28.0

Q ss_pred             CCCEEEEEeC-C---------CcEEEEECCCCeEEEE--ec-cCCCCEEEEEEcCCCCEEEEEeCC
Q 004207          566 DGKLLATGGH-D---------KKAVLWCTESFTVKST--LE-EHTQWITDVRFSPSLSRLATSSAD  618 (768)
Q Consensus       566 dg~~LaSgs~-D---------g~I~VWdl~t~~~~~t--l~-~h~~~V~sl~fspdg~~LaTgs~D  618 (768)
                      ++++++.|+. +         ..+.+||..+.+-...  +. .......++.  .++++++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence            5677777765 2         4688999887543221  11 1111222333  456777888765

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.74  E-value=2.5  Score=45.04  Aligned_cols=191  Identities=13%  Similarity=0.058  Sum_probs=94.5

Q ss_pred             CCCeEEEEEcCC---CCEEEEEeC-C-----CcEEEEECCCCe-----EE-EEec---cCCCCEEEEEEcCCCCEEEEEe
Q 004207          555 TSKVESCHFSPD---GKLLATGGH-D-----KKAVLWCTESFT-----VK-STLE---EHTQWITDVRFSPSLSRLATSS  616 (768)
Q Consensus       555 ~~~I~sl~fSpd---g~~LaSgs~-D-----g~I~VWdl~t~~-----~~-~tl~---~h~~~V~sl~fspdg~~LaTgs  616 (768)
                      ......|+|+|+   +.+|+++.. +     ..|..|+.....     .+ ..+.   ........|+|.|+|.++++.+
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            346889999998   555554433 2     578888876431     12 1232   1112346899999997666643


Q ss_pred             C-------------CCcEEEEECCCC------------CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc-------
Q 004207          617 A-------------DRTVRVWDTENP------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-------  664 (768)
Q Consensus       617 ~-------------DgtIrVWDl~t~------------~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~-------  664 (768)
                      .             .|.|.-++.+..            ........++ .....++|+|+...++++-.....       
T Consensus       154 ~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~d  232 (352)
T 2ism_A          154 EVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHD  232 (352)
T ss_dssp             CTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCC
T ss_pred             CCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCe
Confidence            2             145655665430            0101122233 236779999944445544332222       


Q ss_pred             -EEEEECCCCe------------------eEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEE
Q 004207          665 -IRYWSINNGS------------------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLEL  725 (768)
Q Consensus       665 -I~iWDl~sg~------------------~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~i  725 (768)
                       |.+.  ..+.                  .+..+..+.....++| .++..+++....+.|..+++..........    
T Consensus       233 ei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~----  305 (352)
T 2ism_A          233 EVNLI--VPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVL----  305 (352)
T ss_dssp             EEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEE----
T ss_pred             EEEEe--ccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeec----
Confidence             3332  2221                  1222222234456666 333333333344556666554321100000    


Q ss_pred             eecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE
Q 004207          726 WNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS  759 (768)
Q Consensus       726 wd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs  759 (768)
                            ....+..-...+..|++.|||.++++..
T Consensus       306 ------~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          306 ------RVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             ------EEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             ------chheecccCCCeeEEEECCCCcEEEEEe
Confidence                  0011112235689999999998776654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.63  E-value=2.8  Score=43.35  Aligned_cols=111  Identities=9%  Similarity=0.039  Sum_probs=56.2

Q ss_pred             EEcCCCCEEEEEeC----CC-------cEEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeCC-------CcE
Q 004207          562 HFSPDGKLLATGGH----DK-------KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-------RTV  621 (768)
Q Consensus       562 ~fSpdg~~LaSgs~----Dg-------~I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~D-------gtI  621 (768)
                      +...++.+++.|+.    ++       .+.+||..+.+-...  +.........+.+  ++.+++.|+.+       ..+
T Consensus        52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~  129 (318)
T 2woz_A           52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSV  129 (318)
T ss_dssp             EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred             EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceE
Confidence            33457778888873    12       177888876543321  1111111222223  46677777754       258


Q ss_pred             EEEECCCCCeeEEE-eecCCCCeEEEEEeCCCCeEEEEEeC------CCcEEEEECCCCeeEE
Q 004207          622 RVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAG  677 (768)
Q Consensus       622 rVWDl~t~~~~~~~-~~~h~~~V~slafsp~g~~lLaSgs~------Dg~I~iWDl~sg~~i~  677 (768)
                      .+||+.+.+..... +....... +++. .+ ..+++.|+.      -..+.+||+.+.+-..
T Consensus       130 ~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~  189 (318)
T 2woz_A          130 LCYDPVAAKWSEVKNLPIKVYGH-NVIS-HN-GMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD  189 (318)
T ss_dssp             EEEETTTTEEEEECCCSSCEESC-EEEE-ET-TEEEEECCEESSSCBCCCEEEEETTTTEEEE
T ss_pred             EEEeCCCCCEeECCCCCCccccc-EEEE-EC-CEEEEEcCCCCCCCccceEEEEcCCCCEEEE
Confidence            88898876532111 11000111 1222 23 456666653      2458999998765443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.32  E-value=15  Score=45.82  Aligned_cols=116  Identities=10%  Similarity=0.110  Sum_probs=71.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEeccCCCCEEEEEEcCC------CCEEEEEeC-CCcEEEEEC
Q 004207          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITDVRFSPS------LSRLATSSA-DRTVRVWDT  626 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~--~tl~~h~~~V~sl~fspd------g~~LaTgs~-DgtIrVWDl  626 (768)
                      ..|.+.+.+  +..++.++ ++.|.++.++.++..  ... .-...|.|+++.+.      +.++++|.+ |++|+|+++
T Consensus       514 ~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL  589 (1158)
T 3ei3_A          514 KNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL  589 (1158)
T ss_dssp             CCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEET
T ss_pred             CEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEEC
Confidence            457777664  34666665 678888877655432  222 23467999999763      468999997 999999999


Q ss_pred             CCCCeeEEEeecCCCCeEEEEEeC-CCCeEEEEEeCCCcEEEEECC--CCee
Q 004207          627 ENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSIN--NGSC  675 (768)
Q Consensus       627 ~t~~~~~~~~~~h~~~V~slafsp-~g~~lLaSgs~Dg~I~iWDl~--sg~~  675 (768)
                      .+.+.....-.+......++.+.. .+..+|..|-.||.+..+.+.  +|..
T Consensus       590 ~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l  641 (1158)
T 3ei3_A          590 PSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLL  641 (1158)
T ss_dssp             TTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCE
T ss_pred             CCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCcc
Confidence            865532211111123445554432 233456678889988665543  4443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.09  E-value=1.6  Score=54.93  Aligned_cols=196  Identities=12%  Similarity=0.192  Sum_probs=119.0

Q ss_pred             ccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 004207          500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA  579 (768)
Q Consensus       500 ~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I  579 (768)
                      ...++...+||.-+ ..++.+|+.....                   .++.+. ...+|.--.|-.+..+ +..+ +..|
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~-------------------klks~~-~~e~VvfWkWis~~~l-~lVT-~~aV  127 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKS-------------------KMKAHT-MTDDVTFWKWISLNTV-ALVT-DNAV  127 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhh-------------------hhcccc-cCCCceEEEecCCCee-EEEc-CCeE
Confidence            33466667777654 5677777543221                   111111 1235777777655443 3332 3579


Q ss_pred             EEEECCC-CeEEEEeccC----CCCEEEEEEcCCCCEEEEEe-------CCCcEEEEECCCCCeeEEEeecCCCCeEEEE
Q 004207          580 VLWCTES-FTVKSTLEEH----TQWITDVRFSPSLSRLATSS-------ADRTVRVWDTENPDYSLRTFTGHSTTVMSLD  647 (768)
Q Consensus       580 ~VWdl~t-~~~~~tl~~h----~~~V~sl~fspdg~~LaTgs-------~DgtIrVWDl~t~~~~~~~~~~h~~~V~sla  647 (768)
                      +-|++.. ..++..+..|    ...|..-+.+++.++++..+       -.|.+.+|.++.+.  ...+.||.+....+.
T Consensus       128 yHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~--sQ~iegha~~F~~~~  205 (1630)
T 1xi4_A          128 YHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAASFAQFK  205 (1630)
T ss_pred             EEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc--chhhhHhHhhhheec
Confidence            9999964 2344444433    34577777788888776543       35788999987643  466777776655554


Q ss_pred             Ee--CCCCeEEEEEeC---CCcEEEEECCCC---eeE------EEEec----CCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 004207          648 FH--PSKEDLLCSCDN---NSEIRYWSINNG---SCA------GVFKC----QSGATQMRFQPRLGRILAAAIENYISIL  709 (768)
Q Consensus       648 fs--p~g~~lLaSgs~---Dg~I~iWDl~sg---~~i------~~~~~----~~~i~sl~fsp~~~~llags~Dg~I~Iw  709 (768)
                      ..  +....+||.+..   .+.++|.++...   ...      ..+..    ..-..++..++..+.++..+.-|.|++|
T Consensus       206 ~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~  285 (1630)
T 1xi4_A          206 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLY  285 (1630)
T ss_pred             cCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEE
Confidence            43  222345554433   368999988542   111      11111    2234578888888999999999999999


Q ss_pred             ECCCceEeeec
Q 004207          710 DVETQVCRLKL  720 (768)
Q Consensus       710 D~~t~~~~~~~  720 (768)
                      |+.|+.++..-
T Consensus       286 d~~t~~~i~~~  296 (1630)
T 1xi4_A          286 DLETGTCIYMN  296 (1630)
T ss_pred             ecccchhhhhc
Confidence            99999876543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.01  E-value=0.93  Score=46.97  Aligned_cols=106  Identities=8%  Similarity=0.119  Sum_probs=57.6

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCeeE
Q 004207          566 DGKLLATGGHD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSL  633 (768)
Q Consensus       566 dg~~LaSgs~D-----g~I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~D-----gtIrVWDl~t~~~~~  633 (768)
                      ++++++.|+.+     ..+.+||..+.+-...  +........++.+  ++.+++.|+.+     ..+.+||+.+.....
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            67777776643     3588899887543321  1111122223333  56677777654     468999988765321


Q ss_pred             E-EeecCCCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEECCCCeeE
Q 004207          634 R-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCA  676 (768)
Q Consensus       634 ~-~~~~h~~~V~slafsp~g~~lLaSgs~D-----g~I~iWDl~sg~~i  676 (768)
                      . ..........++.+   ++.+++.|+.+     ..|.+||+.+.+-.
T Consensus       199 ~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  244 (308)
T 1zgk_A          199 ITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETETWT  244 (308)
T ss_dssp             CCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence            1 11111111222222   34577777654     56899999876543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.78  E-value=3.4  Score=43.17  Aligned_cols=135  Identities=4%  Similarity=-0.044  Sum_probs=76.9

Q ss_pred             CCCCEEEEEe--CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC--------------CcEEEEECCC
Q 004207          565 PDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------------RTVRVWDTEN  628 (768)
Q Consensus       565 pdg~~LaSgs--~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D--------------gtIrVWDl~t  628 (768)
                      .++.+|+...  .++.|...+.+..... .+..  .  .+-.|++++.+|+.+...              ..|+..+++.
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~-~l~~--~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg   97 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSNIH-KLSN--D--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG   97 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCSCE-EEEE--E--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCCCE-EccC--C--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence            4677666554  2556666666544333 3322  1  234457788888777543              3677777776


Q ss_pred             CCeeEEEeecCCCCeEEEEEeCCCCeEEEEE---eCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc-CC
Q 004207          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN  704 (768)
Q Consensus       629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSg---s~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~-Dg  704 (768)
                      ...  ..+..  ..  +..|+++++.++.+-   ..+..|...++...........  .+  ..|+++++.|+..+. ..
T Consensus        98 ~~~--~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~--~~--~~~~~~g~~iy~t~~g~~  167 (302)
T 3s25_A           98 HGS--TVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH--YL--FTCNTSDRYFYYNNPKNG  167 (302)
T ss_dssp             CCC--EEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS--CC--CCSEEETTEEEEECTTTC
T ss_pred             Ccc--eEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC--Cc--eEeeEECCEEEEEeCCCc
Confidence            553  22221  11  236777888777665   3455677777764433333332  22  345777778777665 56


Q ss_pred             eEEEEECCCc
Q 004207          705 YISILDVETQ  714 (768)
Q Consensus       705 ~I~IwD~~t~  714 (768)
                      .|.+.++...
T Consensus       168 ~Iy~~~l~g~  177 (302)
T 3s25_A          168 QLYRYDTASQ  177 (302)
T ss_dssp             CEEEEETTTT
T ss_pred             eEEEEECCCC
Confidence            6777776654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.77  E-value=0.56  Score=50.27  Aligned_cols=103  Identities=13%  Similarity=0.206  Sum_probs=59.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee--EE----EeecCCCCeEEEEEeCC---CCeEEEEEeC-------C
Q 004207          599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LR----TFTGHSTTVMSLDFHPS---KEDLLCSCDN-------N  662 (768)
Q Consensus       599 ~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~--~~----~~~~h~~~V~slafsp~---g~~lLaSgs~-------D  662 (768)
                      ....|+|.|++++|+++...|.|++++.+. ...  +.    .+.........|+|+|+   +..++++-..       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            468999999998445556789999998542 210  11    11122345789999996   5556655433       2


Q ss_pred             CcEEEEECCCC--e--eEEE-Eec-------CCCeeEEEEecCCCEEEEEEcC
Q 004207          663 SEIRYWSINNG--S--CAGV-FKC-------QSGATQMRFQPRLGRILAAAIE  703 (768)
Q Consensus       663 g~I~iWDl~sg--~--~i~~-~~~-------~~~i~sl~fsp~~~~llags~D  703 (768)
                      ..|..|++...  .  .... +..       .+....++|.|++ +|+++..|
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd  149 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGE  149 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECC
Confidence            35666766533  1  1111 111       1224579999997 55555433

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.63  E-value=0.12  Score=52.03  Aligned_cols=104  Identities=15%  Similarity=0.111  Sum_probs=62.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE------EEEec--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTV------KSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~------~~tl~--~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t  628 (768)
                      .+.+++|+|+|.+.++  .+|.++-.+..+...      ...+-  +-.. ..++.|.|++.+.++  .||.|+-++..+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            5779999999997777  667766666544111      11110  1111 478899999987777  569888777533


Q ss_pred             CCee------EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 004207          629 PDYS------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW  668 (768)
Q Consensus       629 ~~~~------~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iW  668 (768)
                      ....      ...-.+.=..+.+|.|.|+|. |.++.  |+.++-+
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~  159 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKA  159 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEec
Confidence            2210      111111224689999999986 44343  7775433

>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A

Probab=93.20  E-value=0.027  Score=62.58  Aligned_cols=13  Identities=23%  Similarity=0.355  Sum_probs=6.0

Q ss_pred             hHHHHHHhhhhcc
Q 004207           56 WSVFWDIFIARTN   68 (768)
Q Consensus        56 w~~FWdlf~A~~~   68 (768)
                      |..+|+++...-.
T Consensus       336 ~~~~~~~~~~~~~  348 (449)
T 3iot_A          336 MSAFWYAVRTAVI  348 (449)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4445555544333

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.00  E-value=3.3  Score=48.61  Aligned_cols=108  Identities=11%  Similarity=0.126  Sum_probs=61.8

Q ss_pred             CCCEEEEEeCCC------cEEEEECCCCeEEE--EeccCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCeeEEE
Q 004207          566 DGKLLATGGHDK------KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRT  635 (768)
Q Consensus       566 dg~~LaSgs~Dg------~I~VWdl~t~~~~~--tl~~h~~~V~sl~fspdg~~LaTgs~Dg--tIrVWDl~t~~~~~~~  635 (768)
                      ++++++.||.++      .+.+||..+.+-..  .+......- +++...++.+++.|+.++  .+.+||+.+.......
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence            677777776543      57889988743221  121111122 222323678888887655  6899999876542221


Q ss_pred             e----ecCCCCeEEEEEeCCCCeEEEEEeC--C-----CcEEEEECCCCe
Q 004207          636 F----TGHSTTVMSLDFHPSKEDLLCSCDN--N-----SEIRYWSINNGS  674 (768)
Q Consensus       636 ~----~~h~~~V~slafsp~g~~lLaSgs~--D-----g~I~iWDl~sg~  674 (768)
                      .    ........++.+......+++.|+.  +     ..|.+||+.+..
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            1    1111222335556554557777765  2     458899998776

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=92.71  E-value=1.4  Score=45.73  Aligned_cols=107  Identities=10%  Similarity=0.081  Sum_probs=56.3

Q ss_pred             CCCEEEEEeCC--------CcEEEEECCCCeEEE--EeccCCCCEEEEEEcCCCCEEEEEeC-C-----CcEEEEECCCC
Q 004207          566 DGKLLATGGHD--------KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSA-D-----RTVRVWDTENP  629 (768)
Q Consensus       566 dg~~LaSgs~D--------g~I~VWdl~t~~~~~--tl~~h~~~V~sl~fspdg~~LaTgs~-D-----gtIrVWDl~t~  629 (768)
                      ++++++.|+.+        ..+.+||..+.+-..  .+........++.  -++++++.|+. +     ..+.+||+.+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence            56667777632        358899988764322  1111111222222  24566777765 2     36899999876


Q ss_pred             CeeEE-EeecCCCCeEEEEEeCCCCeEEEEEeCCC-----cEEEEECCCCeeEE
Q 004207          630 DYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAG  677 (768)
Q Consensus       630 ~~~~~-~~~~h~~~V~slafsp~g~~lLaSgs~Dg-----~I~iWDl~sg~~i~  677 (768)
                      ..... ..........++.+  + +.+++.|+.++     .+.+||+.+.+-..
T Consensus       176 ~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  226 (315)
T 4asc_A          176 EWKELAPMQTARSLFGATVH--D-GRIIVAAGVTDTGLTSSAEVYSITDNKWAP  226 (315)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--T-TEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred             eEEECCCCCCchhceEEEEE--C-CEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence            53211 11111111122222  3 45777776544     58889998765443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.21  E-value=0.9  Score=45.65  Aligned_cols=140  Identities=11%  Similarity=-0.081  Sum_probs=75.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCC---e--eEEEeec-CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee------
Q 004207          608 SLSRLATSSADRTVRVWDTENPD---Y--SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC------  675 (768)
Q Consensus       608 dg~~LaTgs~DgtIrVWDl~t~~---~--~~~~~~~-h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~------  675 (768)
                      ...+|++...| +|++=......   .  ....+.. .=..+.+++|+|++. |.++  .+|.+.-.+..+...      
T Consensus         3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s   78 (236)
T 1tl2_A            3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGR   78 (236)
T ss_dssp             CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred             cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccccccc
Confidence            34567777777 55554433322   1  1122211 124688999999876 5555  578877777654211      


Q ss_pred             EEEEe--cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCC
Q 004207          676 AGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNG  753 (768)
Q Consensus       676 i~~~~--~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~  753 (768)
                      -..+-  .-.....+.|.|++...++  .|+.|+-++..+.....       |-.. ... .-..-=..+..|.|.|+|.
T Consensus        79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~-------Wl~~-a~~-vg~~gw~~~~~lff~p~G~  147 (236)
T 1tl2_A           79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDN-------WIAR-ATE-VGSGGWSGFKFLFFHPNGY  147 (236)
T ss_dssp             CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCC-------HHHH-SEE-EECSSGGGEEEEEECTTSC
T ss_pred             ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCc-------eecc-ccE-eccCCCCceEEEEECCCce
Confidence            11111  1122578899998765555  67988877754321110       1000 000 0011113578999999998


Q ss_pred             EEEEEECCCcE
Q 004207          754 MVASASHDKCV  764 (768)
Q Consensus       754 ~LaSgs~DG~V  764 (768)
                      +.++.  |+.+
T Consensus       148 Lyav~--dg~l  156 (236)
T 1tl2_A          148 LYAVH--GQQF  156 (236)
T ss_dssp             EEEEE--TTEE
T ss_pred             EEEEe--CCcE
Confidence            77666  6765

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=91.68  E-value=2.2  Score=44.26  Aligned_cols=107  Identities=7%  Similarity=0.120  Sum_probs=54.6

Q ss_pred             CCCEEEEEeCC-------CcEEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCC
Q 004207          566 DGKLLATGGHD-------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSA------DRTVRVWDTENPD  630 (768)
Q Consensus       566 dg~~LaSgs~D-------g~I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~------DgtIrVWDl~t~~  630 (768)
                      ++++++.|+.+       ..+.+||..+.+-...  +........++.  .++.+++.|+.      -..+.+||+.+..
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence            67777777754       2478888877553322  111111112222  35566666654      2358999998765


Q ss_pred             eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEECCCCeeE
Q 004207          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCA  676 (768)
Q Consensus       631 ~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-----g~I~iWDl~sg~~i  676 (768)
                      ............-.+++.. + +.+++.|+.+     ..+.+||+.+.+-.
T Consensus       187 W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  235 (318)
T 2woz_A          187 WKDLAPMKTPRSMFGVAIH-K-GKIVIAGGVTEDGLSASVEAFDLKTNKWE  235 (318)
T ss_dssp             EEEECCCSSCCBSCEEEEE-T-TEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred             EEECCCCCCCcccceEEEE-C-CEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence            3221111111111222222 2 4566676543     35778998876543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=91.65  E-value=2.7  Score=44.17  Aligned_cols=49  Identities=8%  Similarity=-0.189  Sum_probs=25.0

Q ss_pred             CcEEEEECCCCeEE--EEeccCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEEC
Q 004207          577 KKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSA------DRTVRVWDT  626 (768)
Q Consensus       577 g~I~VWdl~t~~~~--~tl~~h~~~V~sl~fspdg~~LaTgs~------DgtIrVWDl  626 (768)
                      ..+.+||..+.+-.  ..+......-.+++.. ++.+++.|+.      ...+.+||+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence            46889998875432  2222111110122222 4556666654      345777887

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.15  E-value=7.1  Score=45.72  Aligned_cols=150  Identities=11%  Similarity=0.099  Sum_probs=77.3

Q ss_pred             CCCCEEEEEeCC----CcEEEEECCCCeEEEEe--------ccCCCCEEEEEEcCCCCEEEEEeCCC------cEEEEEC
Q 004207          565 PDGKLLATGGHD----KKAVLWCTESFTVKSTL--------EEHTQWITDVRFSPSLSRLATSSADR------TVRVWDT  626 (768)
Q Consensus       565 pdg~~LaSgs~D----g~I~VWdl~t~~~~~tl--------~~h~~~V~sl~fspdg~~LaTgs~Dg------tIrVWDl  626 (768)
                      .++.+++.||.+    ..+.+||..+.+-...-        ......-.++.+..++.+++.|+.++      .+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            466677777653    45888998776533222        11112223344432667777777543      5889998


Q ss_pred             CCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC--cEEEEECCCCeeEEEEe---c---CCCeeEEEEecC-CCEE
Q 004207          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFK---C---QSGATQMRFQPR-LGRI  697 (768)
Q Consensus       627 ~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg--~I~iWDl~sg~~i~~~~---~---~~~i~sl~fsp~-~~~l  697 (768)
                      .+.......-......-.+++...+ ..+++.|+.++  .+.+||..+..-...-.   .   ......+.+... +..+
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~-~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPD-GNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTT-SCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcC-CEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            8754321110011111122233234 44666776544  69999998865433221   1   111233555655 3445


Q ss_pred             EEEEc--C-----CeEEEEECCCce
Q 004207          698 LAAAI--E-----NYISILDVETQV  715 (768)
Q Consensus       698 lags~--D-----g~I~IwD~~t~~  715 (768)
                      +.|+.  +     +.+.+||+.+..
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             EECCcCCCCCeeeCcEEEEEccCCc
Confidence            55554  2     346677776654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=90.32  E-value=3  Score=52.50  Aligned_cols=196  Identities=12%  Similarity=0.200  Sum_probs=108.3

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecC-
Q 004207          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-  639 (768)
Q Consensus       561 l~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h-  639 (768)
                      .-.+|..+.||.-. ..++.|||+++...+..+.-. ..|.--.|-.+. .|+-. .+..|+.|++.....+...+..| 
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~-~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~  146 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHS  146 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCC-eeEEE-cCCeEEEeccCCCCccHHHHhcch
Confidence            34566667666554 578999999987777666543 456666775443 34333 35679999997655555555555 


Q ss_pred             ---CCCeEEEEEeCCCCeEEEEEe------CCCcEEEEECCCCeeEEEEecCCC-eeEEEE--ecCCCEEEEEEc----C
Q 004207          640 ---STTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSG-ATQMRF--QPRLGRILAAAI----E  703 (768)
Q Consensus       640 ---~~~V~slafsp~g~~lLaSgs------~Dg~I~iWDl~sg~~i~~~~~~~~-i~sl~f--sp~~~~llags~----D  703 (768)
                         ...|..-..+++.++++++|-      -.|.+.+|.++.+.. ..+.++.. ...+..  .+....+++-..    .
T Consensus       147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g  225 (1630)
T 1xi4_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  225 (1630)
T ss_pred             hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence               456777888899888887764      357888888874321 12221111 111111  111112222221    2


Q ss_pred             CeEEEEECCCc-eEeeec--ceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          704 NYISILDVETQ-VCRLKL--QTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       704 g~I~IwD~~t~-~~~~~~--~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +.++|.++... .....+  +.+.++-..       ..-.+-..++..++.-+++...+.-|.|++||
T Consensus       226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~-------~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d  286 (1630)
T 1xi4_A          226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPP-------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYD  286 (1630)
T ss_pred             ceEEEEecCCCccCCCCCccccccccCCc-------ccccCcceEEEeccccCEEEEEecCceEEEEe
Confidence            67888887543 111111  111111000       01223345666677667777777777777765

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=90.12  E-value=20  Score=37.44  Aligned_cols=191  Identities=8%  Similarity=0.029  Sum_probs=106.1

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEE---------EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---CCe-
Q 004207          565 PDGKLLATGGHDKKAVLWCTESFTVK---------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---PDY-  631 (768)
Q Consensus       565 pdg~~LaSgs~Dg~I~VWdl~t~~~~---------~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t---~~~-  631 (768)
                      ++..++++.+.+|.|+--.+...+..         ..++.. +.+..+........++..+..|.++-+....   ... 
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            45667888999999998866543211         122322 3455555555556777888899877666532   100 


Q ss_pred             ----e---EEEeecCCCCeEEEEEeC---CCCeEEEEEeCCCcEEEEECCC-------CeeEEEEecCCCeeEEEEecCC
Q 004207          632 ----S---LRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRL  694 (768)
Q Consensus       632 ----~---~~~~~~h~~~V~slafsp---~g~~lLaSgs~Dg~I~iWDl~s-------g~~i~~~~~~~~i~sl~fsp~~  694 (768)
                          .   ...+. ....|.++...+   +.. .++..+..|.++...+..       |.....+.....+..+......
T Consensus        85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~-~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~  162 (312)
T 1suu_A           85 SKGQNISELINLG-DQEEILTIKNSKDLTDDA-YLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKD  162 (312)
T ss_dssp             ---CBGGGTSCCC-TTCCEEEEEEESCCCTTC-EEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTT
T ss_pred             CCCcChhhccCCC-CCCEEEEEEEeccCCCCC-EEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCC
Confidence                0   00122 223455554332   233 344667799999887743       2222223334556666655556


Q ss_pred             CEEEEEEcCCeEEEEECCCceEeee-cceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          695 GRILAAAIENYISILDVETQVCRLK-LQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       695 ~~llags~Dg~I~IwD~~t~~~~~~-~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      ..++..+.+|.+..|....-....+ -..+.+..        +.. .+.|.++..-.++..|++.+..|.++..
T Consensus       163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~--------L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~  227 (312)
T 1suu_A          163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMK--------LKE-GDLFVKVLSVKENPYLLIVSENGYGKRL  227 (312)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCC--------CCT-TCCEEEEEECTTCSEEEEEETTSEEEEE
T ss_pred             CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEE--------eCC-CCEEEEEEEECCCCeEEEEECCCceEEE
Confidence            7899999999998888765322211 11122222        222 3345555554556678888888887654

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=89.94  E-value=19  Score=36.93  Aligned_cols=157  Identities=11%  Similarity=0.023  Sum_probs=89.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEE---ECCCCeEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC--
Q 004207          556 SKVESCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENP--  629 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VW---dl~t~~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~--  629 (768)
                      +.|.++.......+|+..+.+|.++--   ++...+-...+. ....|..+.... +..+++.++.+|.|+...+..-  
T Consensus        24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~  102 (276)
T 3no0_A           24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY  102 (276)
T ss_dssp             CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred             CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence            345555444455566666677776643   333221111133 345566664421 4678999999999999987542  


Q ss_pred             ---CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC---------CeeEEEEecCCCeeEEEEecCCCEE
Q 004207          630 ---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRFQPRLGRI  697 (768)
Q Consensus       630 ---~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s---------g~~i~~~~~~~~i~sl~fsp~~~~l  697 (768)
                         ......+.. ...+..+........++ ..+.+|.+..+++..         |...-.+.....|..+....++.++
T Consensus       103 ~~~G~~~i~lke-gD~l~~~~~~~~~~~il-l~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l  180 (276)
T 3no0_A          103 KAQGMPIIKLTE-GDEVVSIASSVDETHIL-LFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL  180 (276)
T ss_dssp             CSTTEECSCCCT-TCCEEEEEECCSSCEEE-EEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred             hcCCeEEEecCC-CCEEEEEEEeCCCCEEE-EEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence               111112222 34555555554444444 556688887776532         1121123334556666666666789


Q ss_pred             EEEEcCCeEEEEECCCce
Q 004207          698 LAAAIENYISILDVETQV  715 (768)
Q Consensus       698 lags~Dg~I~IwD~~t~~  715 (768)
                      +..+..|.++...+....
T Consensus       181 l~~T~~G~~kr~~~~e~~  198 (276)
T 3no0_A          181 LVITAKGRVKKISHEEIP  198 (276)
T ss_dssp             EEEETTSCEEEEEGGGSC
T ss_pred             EEEeCCCcEEEeEHHHcc
Confidence            999999998888776543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=89.65  E-value=2  Score=48.85  Aligned_cols=122  Identities=6%  Similarity=-0.012  Sum_probs=77.6

Q ss_pred             cEEEEECCC----C-eEEEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCC-----------CeeEEEeecCC
Q 004207          578 KAVLWCTES----F-TVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENP-----------DYSLRTFTGHS  640 (768)
Q Consensus       578 ~I~VWdl~t----~-~~~~tl~~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~t~-----------~~~~~~~~~h~  640 (768)
                      .|.|.|...    + ..+..+.. ......+.++|||+++++++. +.+|.|+|++.-           +..+.....-.
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~-pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G  377 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPV-PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG  377 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEE-SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred             CeeEEccccccccCCceEEEEeC-CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence            366777654    2 23333332 234567889999999887765 679999998731           11112112233


Q ss_pred             CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC----------eeEEEEecCCCeeEEEE------ecCCCEEEEEE
Q 004207          641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----------SCAGVFKCQSGATQMRF------QPRLGRILAAA  701 (768)
Q Consensus       641 ~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg----------~~i~~~~~~~~i~sl~f------sp~~~~llags  701 (768)
                      ......+|.++| +.+.|.--|..|..|++...          ..+..+..+..+-.+.-      .++|.+|++..
T Consensus       378 lGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          378 LGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             SCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             CcccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            457789999998 57778888999999998642          34555555554444433      46677777765

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=88.65  E-value=28  Score=37.18  Aligned_cols=152  Identities=10%  Similarity=0.114  Sum_probs=82.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCC-----------CeEEEEecc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVW  624 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t-----------~~~~~tl~~-h~~~V~sl~fspdg~~LaTgs~DgtIrVW  624 (768)
                      .|..++++....+.+.-..||.|+.|-...           ......+.. ....|..|+--  ..+.+....||.|+.|
T Consensus       106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~w  183 (389)
T 3kci_A          106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTW  183 (389)
T ss_dssp             CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred             ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEe
Confidence            455566766666766777899999995432           011122222 12256666654  3456666789999999


Q ss_pred             ECCCC---------Ce-eEEEeec-CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC---------e--eEEEEec-
Q 004207          625 DTENP---------DY-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---------S--CAGVFKC-  681 (768)
Q Consensus       625 Dl~t~---------~~-~~~~~~~-h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg---------~--~i~~~~~-  681 (768)
                      -....         .. ....+.. ....|..++.-....+.+ .-..||.|+.|-....         .  ....+.. 
T Consensus       184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~-~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~  262 (389)
T 3kci_A          184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTL-CLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL  262 (389)
T ss_dssp             ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEE-EEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGG
T ss_pred             CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEE-EEccCCEEEEEeCCCCCCCCCCCCCCccccEEeccc
Confidence            75421         01 0111111 223566666543223333 4556899999964321         0  1111111 


Q ss_pred             -CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207          682 -QSGATQMRFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       682 -~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                       ...|..++.-.  .+.++...++.|+.|=...
T Consensus       263 ~~~~v~~v~~G~--~hs~alt~~G~v~~wG~n~  293 (389)
T 3kci_A          263 TGLGVVKVECGS--QFSVALTKSGAVYTWGKGD  293 (389)
T ss_dssp             TTSCEEEEEEET--TEEEEEETTSCEEEEECCG
T ss_pred             CCCcEEEEeCCC--CEEEEEeCCCeEEEEeCCC
Confidence             12355555544  3566677889999886543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.54  E-value=8.9  Score=43.57  Aligned_cols=74  Identities=11%  Similarity=0.116  Sum_probs=55.4

Q ss_pred             CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC------Ce-------eEEEEecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 004207          641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN------GS-------CAGVFKCQSGATQMRFQPRLGRILAAAIENYIS  707 (768)
Q Consensus       641 ~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s------g~-------~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~  707 (768)
                      .....+.++|+|++++++|-.+.+|.++|++.      ++       .+......-+....+|.++|.-+.+.--|..|.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence            44567889999999999999999999999873      11       133444456678899999984333444799999


Q ss_pred             EEECCCc
Q 004207          708 ILDVETQ  714 (768)
Q Consensus       708 IwD~~t~  714 (768)
                      .|++...
T Consensus       403 kWni~~a  409 (638)
T 3sbq_A          403 KWNMEEA  409 (638)
T ss_dssp             EEEHHHH
T ss_pred             EEeccHH
Confidence            9998653

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=87.42  E-value=0.59  Score=39.58  Aligned_cols=31  Identities=23%  Similarity=0.353  Sum_probs=28.5

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhcCCCCC
Q 004207           11 MLDVYIYDYLLKRKLHASAKAFQTEGKVSTD   41 (768)
Q Consensus        11 ~L~~yiydyl~k~~~~~~A~~~~~e~~~~~~   41 (768)
                      -||.-|++||..+|+.+++.+|.+|.+++.+
T Consensus        12 EL~kaI~~YL~~~~~~~~~~alr~e~~~~~~   42 (88)
T 1uuj_A           12 ELNRAIADYLRSNGYEEAYSVFKKEAELDMN   42 (88)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence            5899999999999999999999999987754

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=87.38  E-value=28  Score=35.62  Aligned_cols=143  Identities=15%  Similarity=0.099  Sum_probs=73.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEe
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~  636 (768)
                      .|..|+...+. .++. . ||.|+.|-......+-.-..-...|..|+.-.+  +.+.-. ||.|+.|-...... +-..
T Consensus        64 ~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gq-lg~~  136 (282)
T 3qhy_B           64 GVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQ-TTVP  136 (282)
T ss_dssp             CCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTST-TSCC
T ss_pred             CEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCc-CCCC
Confidence            46666664332 2333 4 899999975432211111111246777776544  344445 99999997654322 1111


Q ss_pred             ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-CeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       637 ~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                      ......|..|+.-..  +.++. . ||.|+.|-... +.+-........|..++.-..  ..++. .|+.|+.|=...
T Consensus       137 ~~~~~~i~~i~~G~~--~~~~l-~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~  207 (282)
T 3qhy_B          137 AEAQSGVTALDGGVY--TALAV-K-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNR  207 (282)
T ss_dssp             GGGGSSEEEEEECSS--EEEEE-E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCT
T ss_pred             ccCCCCeEEEEcccC--EEEEE-E-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCC
Confidence            112345777765433  23332 3 78999997653 222111112345666665543  33333 588888886543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=85.95  E-value=39  Score=35.86  Aligned_cols=149  Identities=7%  Similarity=-0.035  Sum_probs=71.9

Q ss_pred             CCCeEEEEEcC--CCCEEEEEeCCC----cEEEEECCCCeEEEEecc--------------CCCCEEEEEEcC-C-CCEE
Q 004207          555 TSKVESCHFSP--DGKLLATGGHDK----KAVLWCTESFTVKSTLEE--------------HTQWITDVRFSP-S-LSRL  612 (768)
Q Consensus       555 ~~~I~sl~fSp--dg~~LaSgs~Dg----~I~VWdl~t~~~~~tl~~--------------h~~~V~sl~fsp-d-g~~L  612 (768)
                      ...|.+|++.|  ++.+++ ++..|    .|...+ +.++.-..+..              +...|.+|++.| + ...|
T Consensus        54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l  131 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW  131 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred             CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence            34699999998  454444 44444    344332 22222111110              112578899987 2 4556


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEee-------------------cCCCCeEEEEEeCCC-CeEEEEEeCCCcEEEEECCC
Q 004207          613 ATSSADRTVRVWDTENPDYSLRTFT-------------------GHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINN  672 (768)
Q Consensus       613 aTgs~DgtIrVWDl~t~~~~~~~~~-------------------~h~~~V~slafsp~g-~~lLaSgs~Dg~I~iWDl~s  672 (768)
                      +.+...+.|...+-. ++. -..+.                   .....|.+|.++|.. ..+++ +..++.|...+ ..
T Consensus       132 ~~g~~~ggl~~S~Dg-G~t-W~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v-g~~~ggl~~s~-Dg  207 (394)
T 3b7f_A          132 YAGTSPQGLFRSTDH-GAS-WEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI-GMSSGGVFEST-DA  207 (394)
T ss_dssp             EEEEETTEEEEESST-TSB-CEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE-EEETBEEEEES-ST
T ss_pred             EEEecCCcEEEEcCC-CCC-eEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE-EECCCCEEEEC-CC
Confidence            666666655544322 111 11111                   012357899998843 34443 33344443332 22


Q ss_pred             CeeEEEEec--------------CCCeeEEEEecCC-CEEEEEEcCCeEEEEE
Q 004207          673 GSCAGVFKC--------------QSGATQMRFQPRL-GRILAAAIENYISILD  710 (768)
Q Consensus       673 g~~i~~~~~--------------~~~i~sl~fsp~~-~~llags~Dg~I~IwD  710 (768)
                      ++.-..+..              ...+.++.++|.. +.+++++. +.|...+
T Consensus       208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-~gl~~s~  259 (394)
T 3b7f_A          208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-CGIYRMD  259 (394)
T ss_dssp             TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-TEEEEEE
T ss_pred             CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-CeEEEeC
Confidence            222222211              1237788898863 56666654 4455444

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=85.30  E-value=43  Score=35.76  Aligned_cols=150  Identities=10%  Similarity=0.054  Sum_probs=81.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----------eEEEEecc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          558 VESCHFSPDGKLLATGGHDKKAVLWCTESF-----------TVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~-----------~~~~tl~~-h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      |..|+.  .....+.-..||.|+.|-....           .....+.. ....+..++++....+.+....||.|+.|-
T Consensus        55 i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG  132 (389)
T 3kci_A           55 PVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG  132 (389)
T ss_dssp             EEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred             eEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence            445543  3445555567888888853321           11112221 223466677777677777788999999996


Q ss_pred             CCCCC---------e-eEEEeec-CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-C--------eeE--EEEec--
Q 004207          626 TENPD---------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-G--------SCA--GVFKC--  681 (768)
Q Consensus       626 l~t~~---------~-~~~~~~~-h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g--------~~i--~~~~~--  681 (768)
                      .....         . ....+.. ....|..|+.-.  . ..+.-..||.|+.|-... +        ...  ..+..  
T Consensus       133 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~--~-hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~  209 (389)
T 3kci_A          133 EAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG--A-HSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ  209 (389)
T ss_dssp             CCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS--S-EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred             CCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc--C-eEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC
Confidence            54211         1 0111111 122566666542  2 333455689999996532 1        111  11111  


Q ss_pred             CCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004207          682 QSGATQMRFQPRLGRILAAAIENYISILDVE  712 (768)
Q Consensus       682 ~~~i~sl~fsp~~~~llags~Dg~I~IwD~~  712 (768)
                      ...|..++.-....+.++...|+.|+.|-..
T Consensus       210 ~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n  240 (389)
T 3kci_A          210 GHRVVDIACGSGDAQTLCLTDDDTVWSWGDG  240 (389)
T ss_dssp             TSCEEEEEECCSSCEEEEEETTTEEEEEECC
T ss_pred             CCeEEEEEEcCCCcEEEEEccCCEEEEEeCC
Confidence            2345666654433567778889999988654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=85.24  E-value=2.2  Score=45.57  Aligned_cols=110  Identities=6%  Similarity=0.086  Sum_probs=68.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCCeeEEEeecC-CCCeEEEEEe--CCCCeEEEEE-eCCCcEEEEECCCCeeEEEEecCCCe
Q 004207          610 SRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFH--PSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGA  685 (768)
Q Consensus       610 ~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h-~~~V~slafs--p~g~~lLaSg-s~Dg~I~iWDl~sg~~i~~~~~~~~i  685 (768)
                      .+++.++.||.|+-+|.++++. +-.+... ..++....-.  +.+..+++.. ..||.|..+|..+|.....+.....+
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~-~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHI-IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEE-EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcE-EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            4788899999999999988775 3333322 1222221100  1122445443 57999999999988665555432111


Q ss_pred             e--EEEEe-----------cCCCEEEEEEcCCeEEEEECCCceEeeec
Q 004207          686 T--QMRFQ-----------PRLGRILAAAIENYISILDVETQVCRLKL  720 (768)
Q Consensus       686 ~--sl~fs-----------p~~~~llags~Dg~I~IwD~~t~~~~~~~  720 (768)
                      .  -+...           ..++.+++++.++.+..+|+.+++....+
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~  137 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF  137 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence            1  01211           14578899999999999999998766544

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=84.74  E-value=29  Score=36.54  Aligned_cols=155  Identities=9%  Similarity=-0.004  Sum_probs=91.7

Q ss_pred             CCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCe-------EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          556 SKVESCHFSP---DGKLLATGGHDKKAVLWCTESFT-------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       556 ~~I~sl~fSp---dg~~LaSgs~Dg~I~VWdl~t~~-------~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      ..|.++..-.   +..+++.++.+|.|+...+....       ....+.. .+.+..+........|+..+..|.+..+.
T Consensus        95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~  173 (327)
T 3uc1_A           95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFS  173 (327)
T ss_dssp             CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred             CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence            3455443333   57799999999999998765422       2223443 34455555555556788888999888887


Q ss_pred             CC--CC----C----eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC-------eeEEEEec---CCCe
Q 004207          626 TE--NP----D----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-------SCAGVFKC---QSGA  685 (768)
Q Consensus       626 l~--t~----~----~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg-------~~i~~~~~---~~~i  685 (768)
                      ..  .-    .    .....+. ....|.++...+.+.. ++..+..|.++.-.+...       .-+..++.   .+.+
T Consensus       174 ~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~-ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~l  251 (327)
T 3uc1_A          174 ATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTY-LLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRL  251 (327)
T ss_dssp             CCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCE-EEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSE
T ss_pred             CcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCE-EEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeE
Confidence            76  21    1    0011122 2355777666555444 446677899888776421       22222222   3345


Q ss_pred             eEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207          686 TQMRFQPRLGRILAAAIENYISILDVET  713 (768)
Q Consensus       686 ~sl~fsp~~~~llags~Dg~I~IwD~~t  713 (768)
                      ..+........++..+.+|.+..|+...
T Consensus       252 v~~~~~~~~~~i~l~T~~G~~ir~~~~~  279 (327)
T 3uc1_A          252 VGALIVDDDSELYAVTSGGGVIRTAARQ  279 (327)
T ss_dssp             EEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred             EEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence            5554444456788888888887777654

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=84.20  E-value=46  Score=35.24  Aligned_cols=136  Identities=10%  Similarity=0.024  Sum_probs=65.4

Q ss_pred             CEEEEEeCCCcEEEEECCC----CeEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCC----cEEEEECCCCCeeEEEee-
Q 004207          568 KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADR----TVRVWDTENPDYSLRTFT-  637 (768)
Q Consensus       568 ~~LaSgs~Dg~I~VWdl~t----~~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~Dg----tIrVWDl~t~~~~~~~~~-  637 (768)
                      ..|++|...| +.+++...    .+..... .....|.+|++.| +...|+.++..|    .|...+ +.+.. -..+. 
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~t-W~~~~~   98 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGN-WTEATR   98 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSC-CEECSB
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCC-ceECCc
Confidence            3566777766 55555432    2222111 2235699999998 333444454444    344332 22221 11111 


Q ss_pred             -----c--------CCCCeEEEEEeCC--CCeEEEEEeCCCcEEEEECCCCeeEEEEe--------------------cC
Q 004207          638 -----G--------HSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--------------------CQ  682 (768)
Q Consensus       638 -----~--------h~~~V~slafsp~--g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~--------------------~~  682 (768)
                           .        ....|.+|++.|.  ...++ ++...+.|...+- .++.-..+.                    ..
T Consensus        99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~-~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~  176 (394)
T 3b7f_A           99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY-AGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDG  176 (394)
T ss_dssp             CCCCCCCC----CCCCCEEEEEEECCTTSTTCEE-EEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCC
T ss_pred             cccCCCcccccccccccceeEEEeCCCCCCCEEE-EEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCC
Confidence                 0        1125778999873  34454 4444555544422 222211111                    11


Q ss_pred             CCeeEEEEecC-CCEEEEEEcCCeEEEE
Q 004207          683 SGATQMRFQPR-LGRILAAAIENYISIL  709 (768)
Q Consensus       683 ~~i~sl~fsp~-~~~llags~Dg~I~Iw  709 (768)
                      ..+.+|.++|. .+.++++..++.|...
T Consensus       177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s  204 (394)
T 3b7f_A          177 PKMHSILVDPRDPKHLYIGMSSGGVFES  204 (394)
T ss_dssp             CEEEEEEECTTCTTCEEEEEETBEEEEE
T ss_pred             CceeEEEECCCCCCEEEEEECCCCEEEE
Confidence            24678888874 3556666666555444

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=81.34  E-value=1  Score=38.33  Aligned_cols=32  Identities=25%  Similarity=0.424  Sum_probs=28.7

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhcCCCCCC
Q 004207           11 MLDVYIYDYLLKRKLHASAKAFQTEGKVSTDP   42 (768)
Q Consensus        11 ~L~~yiydyl~k~~~~~~A~~~~~e~~~~~~~   42 (768)
                      -+|--||-||...|+..||-+|-+|.++...+
T Consensus         7 evN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~   38 (90)
T 2xtc_A            7 EVNFLVYRYLQESGFSHSAFTFGIESHISQSN   38 (90)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCCccc
Confidence            48999999999999999999999999887543

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=81.08  E-value=48  Score=34.71  Aligned_cols=191  Identities=7%  Similarity=0.013  Sum_probs=103.1

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCe----EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---CCC-----ee
Q 004207          565 PDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPD-----YS  632 (768)
Q Consensus       565 pdg~~LaSgs~Dg~I~VWdl~t~~----~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~---t~~-----~~  632 (768)
                      |+..++++.+.+|.|+--.+...+    ....++.. +.+..+........|+..+..|.++-+...   ...     .+
T Consensus         3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~   81 (323)
T 1wp5_A            3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH   81 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred             cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence            456678888999998876544211    11123333 345555554455677777788876555442   111     11


Q ss_pred             EE---EeecCCCCeEEEEEeCC--CCeEEEEEeCCCcEEEEECCC--------CeeEEEEecCCCeeEEEEecCCCEEEE
Q 004207          633 LR---TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN--------GSCAGVFKCQSGATQMRFQPRLGRILA  699 (768)
Q Consensus       633 ~~---~~~~h~~~V~slafsp~--g~~lLaSgs~Dg~I~iWDl~s--------g~~i~~~~~~~~i~sl~fsp~~~~lla  699 (768)
                      +.   .+. ....|.++...++  ....++.++.+|.++-..+..        |.....+...+.+..+........++.
T Consensus        82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l  160 (323)
T 1wp5_A           82 IANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFL  160 (323)
T ss_dssp             GGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEE
T ss_pred             hhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEE
Confidence            10   111 2344665543332  123455778899999987742        222222333455655555555567889


Q ss_pred             EEcCCeEEEEECCCceEeee-cceeEEeecCCCceEEeccCCCCeeEEEEeCCCC-EEEEEECCCcEEE
Q 004207          700 AAIENYISILDVETQVCRLK-LQTLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKI  766 (768)
Q Consensus       700 gs~Dg~I~IwD~~t~~~~~~-~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs~DG~V~I  766 (768)
                      .+.+|.+..|+...-....+ -..+++.++        . ..+.|.++...+++. .|++.+..|..+.
T Consensus       161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L--------~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr  220 (323)
T 1wp5_A          161 VTHNGYALWFDESEVSIVGVRAAGVKGMNL--------K-EGDYIVSGQLITSKDESIVVATQRGAVKK  220 (323)
T ss_dssp             EETTSEEEEEEGGGSCBCCSSCCCEECCCC--------C-TTCCEEEEEEECCTTCEEEEEETTSEEEE
T ss_pred             EeCCCcEEEEEHHHCcccCCCCcCEEEEEe--------C-CCCEEEEEEEEcCCCcEEEEEECCCceEE
Confidence            99999988888765322111 112222222        1 233455555444455 7888888887654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=80.82  E-value=62  Score=35.70  Aligned_cols=104  Identities=12%  Similarity=0.034  Sum_probs=58.9

Q ss_pred             CeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---eEEEEec---------cCCCCEEEEEEcCC----CCEEEEEeC--
Q 004207          557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESF---TVKSTLE---------EHTQWITDVRFSPS----LSRLATSSA--  617 (768)
Q Consensus       557 ~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~---~~~~tl~---------~h~~~V~sl~fspd----g~~LaTgs~--  617 (768)
                      .-..|+|.|||. .|+++...|.|++++....   ..+..+.         .....+..|+|+|+    +.+.++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            467899999996 4555667899999975432   1222221         11356889999996    333333222  


Q ss_pred             C----------CcEEEEECCCC---------CeeEEEee--cCCCCeEEEEEeCCCCeEEEEEe
Q 004207          618 D----------RTVRVWDTENP---------DYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCD  660 (768)
Q Consensus       618 D----------gtIrVWDl~t~---------~~~~~~~~--~h~~~V~slafsp~g~~lLaSgs  660 (768)
                      +          ..|.-|.+...         ...+..+.  ........|+|.|||..++.+|+
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            1          13444655421         11122222  12234688999999975555554

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=80.29  E-value=61  Score=33.99  Aligned_cols=154  Identities=12%  Similarity=0.070  Sum_probs=87.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEE---CCC------CeEEEE---eccCCCCEEEE-EEcC--CCCEEEEEeCCCcEE
Q 004207          558 VESCHFSPDGKLLATGGHDKKAVLWC---TES------FTVKST---LEEHTQWITDV-RFSP--SLSRLATSSADRTVR  622 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~Dg~I~VWd---l~t------~~~~~t---l~~h~~~V~sl-~fsp--dg~~LaTgs~DgtIr  622 (768)
                      +..+........|+..+..|.++-..   +..      |..+..   +. ....|.++ .+..  +..++++++.+|.|+
T Consensus        44 ~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iK  122 (327)
T 3uc1_A           44 VAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVK  122 (327)
T ss_dssp             EEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEE
Confidence            44444444555666666777766543   332      222211   22 23445555 4432  477999999999999


Q ss_pred             EEECCCCC------eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC--C---------CeeEEEEecCCCe
Q 004207          623 VWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--N---------GSCAGVFKCQSGA  685 (768)
Q Consensus       623 VWDl~t~~------~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~--s---------g~~i~~~~~~~~i  685 (768)
                      ...+..-.      .....+.. ...+..+........++ ..+..|.+..+.+.  .         |...-.+.....|
T Consensus       123 r~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il-l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~V  200 (327)
T 3uc1_A          123 KSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL-LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRL  200 (327)
T ss_dssp             EEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE-EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCE
T ss_pred             EeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE-EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEE
Confidence            98875421      11112332 34555555544445455 45567888777665  2         1111122234557


Q ss_pred             eEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004207          686 TQMRFQPRLGRILAAAIENYISILDVETQ  714 (768)
Q Consensus       686 ~sl~fsp~~~~llags~Dg~I~IwD~~t~  714 (768)
                      ..+...+.+.+++.++..|.++...+...
T Consensus       201 v~~~~~~~~~~ll~~T~~G~~Krt~l~e~  229 (327)
T 3uc1_A          201 LSLNVVREGTYLLVATSGGYAKRTAIEEY  229 (327)
T ss_dssp             EEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred             EEEEEECCCCEEEEEeCCCcEEEEEHHHc
Confidence            77766666678999999999888776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	768
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-22
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-21
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-20
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-20
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-19
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-14
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-14
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-13
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-12
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-10
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	6e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.001
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	5e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.003

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.6 bits (236), Expect = 5e-22
 Identities = 46/228 (20%), Positives = 80/228 (35%), Gaps = 37/228 (16%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
               P+G  + +   DK   +W  ++     T   H +W+  VR +   + +A+ S D+T
Sbjct: 107 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 166

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-------------------DLLCSCDN 661
           VRVW     +        H   V  + + P                        L S   
Sbjct: 167 VRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 225

Query: 662 NSEIRYWSINNGSCAGVFKCQSGA-TQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720
           +  I+ W ++ G C             + F      IL+ A +  + + D + + C    
Sbjct: 226 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC---- 281

Query: 721 QTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768
                         TL+AH+  V+SL        V + S D+ VK+W+
Sbjct: 282 ------------MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.7 bits (226), Expect = 8e-21
 Identities = 43/261 (16%), Positives = 88/261 (33%), Gaps = 49/261 (18%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV----------- 603
            S V    F P   ++ +   D    +W  E+   + TL+ HT  + D+           
Sbjct: 17  RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76

Query: 604 -------------------------------RFSPSLSRLATSSADRTVRVWDTENPDYS 632
                                             P+   + ++S D+T+++W+ +     
Sbjct: 77  CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC- 135

Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP 692
           ++TFTGH   V  +  +     L+ SC N+  +R W +    C    +      +     
Sbjct: 136 VKTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 194

Query: 693 RLGRILAAAIENYISILDVETQVCRLKL----QTLELWNMTENKTL-TLSAHDKLVSSLA 747
                 + +                L      +T+++W+++    L TL  HD  V  + 
Sbjct: 195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL 254

Query: 748 ASTVNGMVASASHDKCVKIWK 768
             +    + S + DK +++W 
Sbjct: 255 FHSGGKFILSCADDKTLRVWD 275

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.4 bits (220), Expect = 6e-20
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 602
           +         +  +  E+      G  L +G  DK   +W   +     TL  H  W+  
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 252

Query: 603 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
           V F      + + + D+T+RVWD +N    ++T   H   V SLDFH +    + +   +
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKT-APYVVTGSVD 310

Query: 663 SEIRYW 668
             ++ W
Sbjct: 311 QTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.7 bits (200), Expect = 2e-17
 Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 23/188 (12%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T    +        V     + DG L+A+  +D+   +W   +   K+ L EH   +  +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 604 RF--------------------SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 643
            +                          L + S D+T+++WD       L T  GH   V
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWV 250

Query: 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRFQPRLGRILAAAI 702
             + FH      + SC ++  +R W   N  C           T + F      ++  ++
Sbjct: 251 RGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

Query: 703 ENYISILD 710
           +  + + +
Sbjct: 310 DQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.3 bits (186), Expect = 1e-15
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 17/178 (9%)

Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
           K  L  H   +T V F P  S + ++S D T++VWD E  D+  RT  GH+ +V  + F 
Sbjct: 10  KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-ERTLKGHTDSVQDISFD 68

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 709
            S + L     + +   +          +       + +   P    I++A+ +  I + 
Sbjct: 69  HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128

Query: 710 DVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
           +V+T  C                  T + H + V  +  +    ++AS S+D+ V++W
Sbjct: 129 EVQTGYC----------------VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 170

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 5e-04
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 724 ELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
           + W     +   LS H   V+ +    V  ++ SAS D  +K+W
Sbjct: 1   KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW 44

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.5 bits (220), Expect = 9e-20
 Identities = 30/219 (13%), Positives = 62/219 (28%), Gaps = 9/219 (4%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATS 615
           +    ++ D   +A   ++ +  ++      +     L+EH   +T V ++P  +R+ T 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS- 674
             DR   VW  +   +                     E        +  I        + 
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 675 ----CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTE 730
                      +S    + + P    + A + +    I     +    +       +   
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 189

Query: 731 NKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
              L    S+    V  +  S     VA  SHD  V + 
Sbjct: 190 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA 228

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.0 bits (164), Expect = 1e-12
 Identities = 9/81 (11%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKED 654
             + I+   ++   +++A    +  V +++     +  +     H+  V  +D+ P   +
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSN 64

Query: 655 LLCSCDNNSEIRYWSINNGSC 675
            + +C  +     W++   + 
Sbjct: 65  RIVTCGTDRNAYVWTLKGRTW 85

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 6/117 (5%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
             F  +  L+A  GHD   VL+  +S   K +                 +R    + D+ 
Sbjct: 249 VTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINNGS 674
                +      L   + H  +V  +       +K    C+   +  +  W + +  
Sbjct: 308 ASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.9 bits (125), Expect = 8e-08
 Identities = 29/230 (12%), Positives = 66/230 (28%), Gaps = 6/230 (2%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWIT 601
            + +   +     +V    ++PD   + T G D+ A +W  +  T K    +    +   
Sbjct: 40  KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99

Query: 602 DVRFSPSLSRLATSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
            VR++P+  + A  S  R + +     EN  +  +       + +          LL + 
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159

Query: 660 DNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 717
             + + R +S                                  +       +       
Sbjct: 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 219

Query: 718 LKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
               T+ L +  +   +   A + L            + +A HD    ++
Sbjct: 220 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLF 269

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 5/86 (5%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLS 610
               +                DKKA    + +         H   ++ +          S
Sbjct: 284 LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG-AGLDSLHKNSVSQISVLSGGKAKCS 342

Query: 611 RLATSSADRTVRVWDTENPDYSLRTF 636
           +  T+  D  + +WD  + + +L+  
Sbjct: 343 QFCTTGMDGGMSIWDVRSLESALKDL 368

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.9 bits (216), Expect = 3e-19
 Identities = 29/128 (22%), Positives = 40/128 (31%), Gaps = 4/128 (3%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--IT 601
                Q      S + +  F P+G   ATG  D    L+   +     T         IT
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274

Query: 602 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
            V FS S   L     D    VWD    D       GH   V  L         + +   
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDD-GMAVATGSW 332

Query: 662 NSEIRYWS 669
           +S ++ W+
Sbjct: 333 DSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.9 bits (203), Expect = 1e-17
 Identities = 38/195 (19%), Positives = 66/195 (33%), Gaps = 19/195 (9%)

Query: 575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634
            D    LW  E+    +T   HT  +  +  +P      + + D + ++WD        +
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQ 220

Query: 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQP 692
           TFTGH + + ++ F P+        D+ +       +              G T + F  
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280

Query: 693 RLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN 752
               +LA   +   ++ D                         L+ HD  VS L  +   
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADR----------------AGVLAGHDNRVSCLGVTDDG 324

Query: 753 GMVASASHDKCVKIW 767
             VA+ S D  +KIW
Sbjct: 325 MAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.2 bits (196), Expect = 1e-16
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 3/155 (1%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
           V S   +PD +L  +G  D  A LW       + T   H   I  + F P+ +  AT S 
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246

Query: 618 DRTVRV-WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
           D T R+     + +    +       + S+ F  S   LL +  ++     W       A
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDALKADRA 305

Query: 677 GVFKCQSGA-TQMRFQPRLGRILAAAIENYISILD 710
           GV        + +        +   + ++++ I +
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.9 bits (172), Expect = 1e-13
 Identities = 33/217 (15%), Positives = 78/217 (35%), Gaps = 22/217 (10%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
            +K+ + H+  D +LL +   D K ++W + +      +   + W+    ++PS + +A 
Sbjct: 55  LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVAC 114

Query: 615 SSADRTVRVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
              D    +++ +  + +    R   GH+  +    F    + +  S D       W I 
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT--CALWDIE 172

Query: 672 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTEN 731
            G     F   +G           R+  +   +                 + +LW++ E 
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA----------------SAKLWDVREG 216

Query: 732 KTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
               T + H+  ++++         A+ S D   +++
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.5 bits (194), Expect = 2e-16
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 18/142 (12%)

Query: 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS------------TL 593
           +E +        V S  F+ DG+ + +G  D+   LW  ++   KS            T 
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304

Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-- 651
             H  ++  V  + +   + + S DR V  WD ++ +  L    GH  +V+S+       
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAVANGSS 363

Query: 652 ---KEDLLCSCDNNSEIRYWSI 670
              + ++  +   + + R W  
Sbjct: 364 LGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.0 bits (185), Expect = 3e-15
 Identities = 55/232 (23%), Positives = 90/232 (38%), Gaps = 31/232 (13%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------------------H 596
           TS V    FS DG+ LATG  +K   ++     ++ + L +                   
Sbjct: 62  TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120

Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656
             +I  V FSP    LAT + DR +R+WD EN               +    +    D L
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI--VMILQGHEQDIYSLDYFPSGDKL 178

Query: 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQV 715
            S   +  +R W +  G C+     + G T +   P  G+ +AA  ++  + + D ET  
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 716 CRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
              +L +         +  + + H   V S+  +     V S S D+ VK+W
Sbjct: 239 LVERLDS---------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.4 bits (173), Expect = 1e-13
 Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 26/177 (14%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLA 613
                DGK +A G  D+   +W +E+  +   L+        H   +  V F+     + 
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270

Query: 614 TSSADRTVRVWDTENPD-----------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
           + S DR+V++W+ +N +               T+ GH   V+S+    + ++ + S   +
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSKD 329

Query: 663 SEIRYWSINNGSCAGVFKCQSGA-------TQMRFQPRLGRILAAAIENYISILDVE 712
             + +W   +G+   + +    +             P        + +    I   +
Sbjct: 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.0 bits (172), Expect = 1e-13
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV------RFSPS 608
              V S   + + + + +G  D+  + W  +S      L+ H   +  V         P 
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367

Query: 609 LSRLATSSADRTVRVWDTE 627
            +  AT S D   R+W  +
Sbjct: 368 YNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.8 bits (169), Expect = 3e-13
 Identities = 53/284 (18%), Positives = 84/284 (29%), Gaps = 84/284 (29%)

Query: 552 PASTSKVESCHFSPDGKLLATGGH--------------------------------DKKA 579
           P+S   + S  FSPDGK LATG                                      
Sbjct: 118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 177

Query: 580 VLWCTESFTVKST----------LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629
           ++  +   TV+            L       T          +A  S DR VRVWD+E  
Sbjct: 178 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 237

Query: 630 ------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--- 680
                 D    + TGH  +V S+ F       + S   +  ++ W++ N +     K   
Sbjct: 238 FLVERLDSENESGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296

Query: 681 ----------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTE 730
                      +     +        IL+ + +  +   D ++                 
Sbjct: 297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP-------------- 342

Query: 731 NKTLTLSAHDKLVSSLAASTV------NGMVASASHDKCVKIWK 768
              L L  H   V S+A +          + A+ S D   +IWK
Sbjct: 343 --LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 8/103 (7%)

Query: 591 STLEEHTQWITDVRFSPSLSR---LATSSADRTVRVWDTENP---DYSLRTFTGHSTTVM 644
           +    H++ I                    +    +++   P   D  L     H++ V 
Sbjct: 7   NQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVC 66

Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ 687
            + F    E L   C+     + + +++GS        S A +
Sbjct: 67  CVKFSNDGEYLATGCNKT--TQVYRVSDGSLVARLSDDSAANK 107

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (176), Expect = 3e-14
 Identities = 41/213 (19%), Positives = 85/213 (39%), Gaps = 23/213 (10%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
                DG+ + +G +D    +W  E+ T   TL+ HT  +  ++F      + + S D +
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTS 198

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           +RVWD E  +  + T TGH +    ++      ++L S + +S ++ W I  G C    +
Sbjct: 199 IRVWDVETGN-CIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQ 254

Query: 681 CQSGAT--QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSA 738
             +         Q     ++ ++ +  + + D++T      ++ L         TL    
Sbjct: 255 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF---IRNL--------VTLESGG 303

Query: 739 HDKLVSSLAASTVNGMVASASHDKC----VKIW 767
              +V  + AS    + A  S +      + + 
Sbjct: 304 SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (176), Expect = 3e-14
 Identities = 42/238 (17%), Positives = 81/238 (34%), Gaps = 34/238 (14%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
              V +C     G  + +G  D    +W   +     TL  HT  +   +   ++    +
Sbjct: 16  DDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS 74

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +     V   +T    ++L   T     +   +          S   ++ +R W I  G 
Sbjct: 75  TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV------VSGSRDATLRVWDIETGQ 128

Query: 675 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ------------- 721
           C  V      A +        R+++ A +  + + D ET+ C   LQ             
Sbjct: 129 CLHVLMGHVAAVRCVQYDG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG 187

Query: 722 ----------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768
                     ++ +W++     + TL+ H  L S +     + ++ S + D  VKIW 
Sbjct: 188 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWD 243

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 4e-13
 Identities = 26/204 (12%), Positives = 59/204 (28%), Gaps = 20/204 (9%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
           W          L+ H   +         +R+ + S D T++VW        LRT  GH+ 
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTG 58

Query: 642 TVMSLDFHPS--------KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR 693
            V S     +        +   + + +    I     +  +   +   +           
Sbjct: 59  GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118

Query: 694 LGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLS--AHDKLVSSLAASTV 751
           L        +    ++     V  ++     + +   +  + +     +  + +L   T 
Sbjct: 119 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN 178

Query: 752 NGM--------VASASHDKCVKIW 767
                      V S S D  +++W
Sbjct: 179 RVYSLQFDGIHVVSGSLDTSIRVW 202

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 7e-12
 Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 15/161 (9%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
                DG  + +G  D    +W  E+     TL  H    + +    ++  L + +AD T
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADST 238

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           V++WD +     L+T  G +    ++      ++ + +  ++  ++ W +  G       
Sbjct: 239 VKIWDIKTGQC-LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297

Query: 681 C------QSGATQMRFQPRLGRILAAA-----IENYISILD 710
                       ++R       + A        E  + +LD
Sbjct: 298 TLESGGSGGVVWRIRASNT-KLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 9e-09
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 14/123 (11%)

Query: 560 SCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616
           +        +L +G  D    +W     +         +H   +T ++F+ +     TSS
Sbjct: 220 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV--ITSS 277

Query: 617 ADRTVRVWDTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSE---IRYW 668
            D TV++WD +  +  +R        G    V  +    +K        N +E   +   
Sbjct: 278 DDGTVKLWDLKTGE-FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

Query: 669 SIN 671
             +
Sbjct: 337 DFD 339

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (174), Expect = 5e-14
 Identities = 23/138 (16%), Positives = 48/138 (34%), Gaps = 2/138 (1%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
            + V +C    +   + TG  DK   ++ + +      L  H   +  ++++     L +
Sbjct: 12  MTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVS 69

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
            S DRTVRVWD +    +      +ST              + +   ++ +  W +   S
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129

Query: 675 CAGVFKCQSGATQMRFQP 692
                  +     +   P
Sbjct: 130 SVPDHGEEHDYPLVFHTP 147

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 2e-08
 Identities = 6/90 (6%), Positives = 24/90 (26%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
              ++         H   ++ +        +  S ++    +++  +           + 
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325

Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
            + S++F           D  S +     +
Sbjct: 326 QIWSVNFKGKTLVAAVEKDGQSFLEILDFS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 2e-08
 Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSS 616
                F     +L +G  + +  ++   S   V + + +    I  V F    + +A   
Sbjct: 285 SAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVE 342

Query: 617 ADRTVRVWD 625
            D    +  
Sbjct: 343 KDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 2e-06
 Identities = 28/207 (13%), Positives = 57/207 (27%), Gaps = 21/207 (10%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
              S  G ++ +G +D   ++W          L  HT  I    +     R  ++S D T
Sbjct: 165 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 224

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           +R+WD EN +         +   +                           N        
Sbjct: 225 IRIWDLENGELMYTLQGHTALVGLLRLSDKF-----LVSAAADGSIRGWDANDYSRKFSY 279

Query: 681 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD 740
             +  + +        IL +  EN  +I ++ +      +               +    
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKL---VHA------------NILKDA 324

Query: 741 KLVSSLAASTVNGMVASASHDKCVKIW 767
             + S+       +VA+   D    + 
Sbjct: 325 DQIWSVNFKG-KTLVAAVEKDGQSFLE 350

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 5e-14
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 1/66 (1%)

Query: 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
           S  F+  GK   + G D     W T         +  +  +     S     + T S D+
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDK 328

Query: 620 TVRVWD 625
              V++
Sbjct: 329 KATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 4e-12
 Identities = 23/120 (19%), Positives = 36/120 (30%), Gaps = 8/120 (6%)

Query: 548 FQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
           FQ    S     S H + DG++       D              +TL  H + +  V  S
Sbjct: 3   FQGAMGSK-PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTIS 60

Query: 607 PSLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
                + T      V+VWD  +P      S          + S    P    L+   + +
Sbjct: 61  NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 7e-10
 Identities = 30/244 (12%), Positives = 60/244 (24%), Gaps = 31/244 (12%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSL 609
              V +   S   + + TGG      +W       KS + +        +I   +  P  
Sbjct: 51  GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-------------------MSLDFHP 650
             L       T+ +WD   P   ++     S                       ++    
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169

Query: 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 710
                L             I+  +             +R             +    I  
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229

Query: 711 V------ETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCV 764
           +      E     ++   +E+ ++ +     L  H+  V SL  +       S   D  +
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLL 289

Query: 765 KIWK 768
             W+
Sbjct: 290 NAWR 293

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 5e-09
 Identities = 33/238 (13%), Positives = 64/238 (26%), Gaps = 24/238 (10%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
            + + SC   PDG  L  GG      +W   + T +   E  +        + S      
Sbjct: 97  DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC 156

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
            S      +   +  + +L       T   S     +    L +   ++ +R W +  G 
Sbjct: 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216

Query: 675 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ------------- 721
                   S    + + P    +      + + +L V                       
Sbjct: 217 QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYC 276

Query: 722 -----------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768
                       L  W      ++  S     V S   S  +  + + S DK   +++
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.2 bits (175), Expect = 5e-14
 Identities = 24/209 (11%), Positives = 57/209 (27%), Gaps = 32/209 (15%)

Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----------YSLRTF 636
              +  + H   I  V    S     + S D  ++VWD +  D           +  ++ 
Sbjct: 5   ATANAGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62

Query: 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG------------ 684
             H   + +++    +  L+ +   + ++ ++ I           +              
Sbjct: 63  LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122

Query: 685 ---ATQMRFQPRLGRILAAAIEN---YISILDVETQVCRLKLQTLELWNMTENKTLTLSA 738
                       L   L A       YI                       +    +   
Sbjct: 123 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182

Query: 739 HDKLVSSLAASTVNGMVASASHDKCVKIW 767
             +  +S+  S   G++A+  ++  V+I 
Sbjct: 183 PSQFATSVDISE-RGLIATGFNNGTVQIS 210

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 7e-09
 Identities = 32/244 (13%), Positives = 69/244 (28%), Gaps = 41/244 (16%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------ITDVRFSPS---- 608
            + +  L+AT       + +          +                   +++  S    
Sbjct: 75  DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 134

Query: 609 -LSRLATSSADRTVRVWD-----------------TENPDYSLRTFTGHSTTVMSLDFHP 650
              RL  +    T  +W                  T     ++ +    S    S+D   
Sbjct: 135 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE 194

Query: 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR-------FQPRLGRILAAAIE 703
               L+ +  NN  ++   ++       F+ Q              F P+   +  A   
Sbjct: 195 RG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 252

Query: 704 NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 763
           N    + +       ++ +L +   +   +L   AH   V SL+ +     + SA  D  
Sbjct: 253 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK 312

Query: 764 VKIW 767
           ++ W
Sbjct: 313 LRFW 316

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 1e-06
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 21/118 (17%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI----TDVRFSPSLS 610
           +S V S  F+  G+ L + G D K   W  ++    +TL  H   I      +       
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 348

Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
            LA         V+D +      R+  G              E L C C + S IR++
Sbjct: 349 SLAEPG------VFDVKFLKKGWRSGMGADLN----------ESLCCVCLDRS-IRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 7e-06
 Identities = 37/255 (14%), Positives = 72/255 (28%), Gaps = 59/255 (23%)

Query: 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL------WCTESFTVKSTL 593
                    +     +    S   S  G L+ATG ++    +          +F  + ++
Sbjct: 169 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 227

Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---------------SLRTFTG 638
             ++  I  V+FSP  S LA +    +         ++               +      
Sbjct: 228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 287

Query: 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-----TQMRFQPR 693
           HS+ VMSL F+ S E L  +  +   +R+W +                      +     
Sbjct: 288 HSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH 346

Query: 694 LGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNG 753
            G  LA        + DV                             K   S   + +N 
Sbjct: 347 -GDSLAEP-----GVFDV-------------------------KFLKKGWRSGMGADLNE 375

Query: 754 MVASASHDKCVKIWK 768
            +     D+ ++ ++
Sbjct: 376 SLCCVCLDRSIRWFR 390

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.6 bits (171), Expect = 1e-13
 Identities = 13/86 (15%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFH 649
             +    +I+D++  PS S L  +S D ++ V+    +  +  L     +   ++  +F 
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSC 675
            + +  +       EI    +     
Sbjct: 66  DNTDLQIYVGTVQGEILKVDLIGSPS 91

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 4e-09
 Identities = 14/147 (9%), Positives = 34/147 (23%), Gaps = 3/147 (2%)

Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVR 604
            Q+  A    +      P   LL     D    ++  +       L     +   +    
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
           F  +          +   +        S +  T +   +         +D L +   +  
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 665 IRYWSINNGSCAGVFKCQSGATQMRFQ 691
           I      N     +      +   + +
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVK 150

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 1e-08
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
           S  FSP  K L T G D     W  ++        +     + V+ + S + L  +++D 
Sbjct: 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDD 314

Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLD 647
           T +     +     +T   +++++  + 
Sbjct: 315 TFKTNAAID-----QTIELNASSIYIIF 337

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 2e-07
 Identities = 13/132 (9%), Positives = 39/132 (29%), Gaps = 18/132 (13%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTES---------------FTVKSTLEEHTQWITDVRF 605
                + +  A    D +  +   +                  +          +  + F
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259

Query: 606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
           SP    L T+ +D  +  W+ +     ++ F   +     +    S +++LC   ++   
Sbjct: 260 SPRHKFLYTAGSDGIISCWNLQTRK-KIKNFAKFNEDS-VVKIACS-DNILCLATSDDTF 316

Query: 666 RYWSINNGSCAG 677
           +  +  + +   
Sbjct: 317 KTNAAIDQTIEL 328

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 5e-04
 Identities = 14/154 (9%), Positives = 40/154 (25%), Gaps = 3/154 (1%)

Query: 617 ADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
            +  V+ +       D      +G    +  +   P +++       +  +     ++  
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227

Query: 675 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTL 734
                  +      R   +   +         S    +          +  WN+   K +
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKI 286

Query: 735 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768
              A     S +  +  + ++  A+ D   K   
Sbjct: 287 KNFAKFNEDSVVKIACSDNILCLATSDDTFKTNA 320

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (166), Expect = 3e-13
 Identities = 48/287 (16%), Positives = 84/287 (29%), Gaps = 80/287 (27%)

Query: 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--- 610
            TSK   C    D + + +G  D    +W   +   K  L  HT  +  +++   +    
Sbjct: 13  ETSKGVYC-LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITG 71

Query: 611 -----------------------------------RLATSSADRTVRVWDTEN--PDYSL 633
                                               + T S DR++ VWD  +       
Sbjct: 72  SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR 131

Query: 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR 693
           R   GH   V  +DF       + S   +  I+ W+ +                   Q R
Sbjct: 132 RVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC-LQYR 187

Query: 694 LGRILAAAIENYISILDVETQVCRLKLQ-----------------------TLELWNMTE 730
              +++ + +N I + D+E   C   L+                        +++W++  
Sbjct: 188 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVA 247

Query: 731 NKTL----------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
                         TL  H   V  L        + S+SHD  + IW
Sbjct: 248 ALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSR 611
                D K + +G +D K  +W   +              TL EH+  +  ++F     +
Sbjct: 222 RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--Q 279

Query: 612 LATSSADRTVRVWD 625
           + +SS D T+ +WD
Sbjct: 280 IVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA 685
           +   +  S  V  L +       + S   ++ I+ W  N   C  +    +G+
Sbjct: 8   IHCRSETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGS 57

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 65.8 bits (158), Expect = 3e-12
 Identities = 11/94 (11%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647
           ++      H + IT +  S     L ++ A+  +  WD      +      H+T +  + 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 681
                +  L +   +  ++               
Sbjct: 63  TTSKGD--LFTVSWDDHLKVVPAGGSGVDSSKAV 94

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.2 bits (128), Expect = 2e-08
 Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 2/122 (1%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLA 613
              + +   S DGK L +   +     W   +        + H   IT ++ +     L 
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLF 70

Query: 614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
           T S D  ++V               +  +   L    S +  +        I  +S    
Sbjct: 71  TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130

Query: 674 SC 675
           + 
Sbjct: 131 TE 132

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.6 bits (116), Expect = 6e-07
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSAD 618
             +SPD   LATG  D   ++W     +    +    H     +     + + + ++  D
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 289

Query: 619 RTVRVWD 625
             ++ W+
Sbjct: 290 SNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.4 bits (105), Expect = 1e-05
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-DYSLRTFTGHS 640
                    ++   HT  +  V +SP   RLAT S D +V VW+   P D+ +     H+
Sbjct: 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA 268

Query: 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
            + ++     + E  + S   +S I++W++
Sbjct: 269 MSSVNSVIWLN-ETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 5e-04
 Identities = 13/144 (9%), Positives = 32/144 (22%), Gaps = 14/144 (9%)

Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683
                 +          T+V   +          S          +             +
Sbjct: 166 SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA 225

Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLV 743
               + + P   R+   +++N + + ++                      +   AH    
Sbjct: 226 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH--------------PIIIKGAHAMSS 271

Query: 744 SSLAASTVNGMVASASHDKCVKIW 767
            +         + SA  D  +K W
Sbjct: 272 VNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 62.2 bits (149), Expect = 5e-11
 Identities = 22/147 (14%), Positives = 42/147 (28%), Gaps = 3/147 (2%)

Query: 548 FQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
           F  +P +          +P G  +    +          S T      EH+   T  + S
Sbjct: 9   FPSLPRTARGTAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS 67

Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
           PS    A+      VR+WDT    + L+T     S  V  + +    + +    +     
Sbjct: 68  PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 127

Query: 666 RYWSINNGSCAGVFKCQSGATQMRFQP 692
            +  + +   +                
Sbjct: 128 GHVFLFDTGTSNGNLTGQARAMNSVDF 154

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.8 bits (148), Expect = 8e-11
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADR 619
             +SPDG  +A+   DK   +W   +  V+ T+   T+     +    +   L + SA+ 
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303

Query: 620 TVRVWDTE 627
            +   + E
Sbjct: 304 FINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.8 bits (122), Expect = 1e-07
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS- 640
                         H+  +  + +SP  +++A++SAD+T+++W+        +T    + 
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-EKTIPVGTR 281

Query: 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
                L    +K   L S   N  I + 
Sbjct: 282 IEDQQLGIIWTK-QALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 23/251 (9%), Positives = 58/251 (23%), Gaps = 38/251 (15%)

Query: 555 TSKVESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612
           + +      SP G   A+G      +       +  +K+T+   +  + D+ +     R+
Sbjct: 58  SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 117

Query: 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672
           A     R            +           M+               ++          
Sbjct: 118 AAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP 177

Query: 673 GSCAGVFKCQS--GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------- 721
                    +       +R+ P      +   +  I + +          +         
Sbjct: 178 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 237

Query: 722 -----------------------TLELWNMTENKTL-TLSAHDKL-VSSLAASTVNGMVA 756
                                  T+++WN+   K   T+    ++    L        + 
Sbjct: 238 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV 297

Query: 757 SASHDKCVKIW 767
           S S +  +   
Sbjct: 298 SISANGFINFV 308

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 62.6 bits (150), Expect = 6e-11
 Identities = 9/87 (10%), Positives = 22/87 (25%), Gaps = 4/87 (4%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
            +     + +S                         + +  +       + E    +TD+
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK----TRKVTEVKNNLTDL 320

Query: 604 RFSPSLSRLATSSADRTVRVWDTENPD 630
           R S     +     D  +  +  E P+
Sbjct: 321 RLSADRKTVMVRKDDGKIYTFPLEKPE 347

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 58.0 bits (138), Expect = 2e-09
 Identities = 22/208 (10%), Positives = 52/208 (25%), Gaps = 15/208 (7%)

Query: 563 FSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--R 619
           FSP DG L+A     +  +   + ++ +K         I  VR                 
Sbjct: 10  FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP---EPLRIRYVRRGGDTKVAFIHGTREGD 66

Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
            + ++D          F  +   V ++    + +  + + D    +              
Sbjct: 67  FLGIYDYRTG--KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124

Query: 680 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAH 739
             ++  T          I       +        Q          +++M   K    +  
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH-------VYDMEGRKIFAATTE 177

Query: 740 DKLVSSLAASTVNGMVASASHDKCVKIW 767
           +    + A    +  +   S+       
Sbjct: 178 NSHDYAPAFDADSKNLYYLSYRSLDPSP 205

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 54.1 bits (128), Expect = 3e-08
 Identities = 17/213 (7%), Positives = 43/213 (20%), Gaps = 20/213 (9%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
            +  P       G   +   ++  E   + +             F      L   S    
Sbjct: 143 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-ENSHDYAPAFDADSKNLYYLSYRSL 201

Query: 621 VRVWDTENPDYS------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
               D    ++S               +       P          + +++   S     
Sbjct: 202 DPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV 261

Query: 675 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTL 734
             G ++                         +            +   L  +++   K  
Sbjct: 262 DPGDYRMIIPLESSIL----------IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT 311

Query: 735 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
            +  +   ++ L  S     V     D  +  +
Sbjct: 312 EVKNN---LTDLRLSADRKTVMVRKDDGKIYTF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 15/215 (6%), Positives = 38/215 (17%)

Query: 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612
               ++       D K+    G  +   L   +  T K+   E               + 
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99

Query: 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672
           A  + DR   +                   +       +   +              +  
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159

Query: 673 GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENK 732
                  + +                  A    +  L   +         L       +K
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219

Query: 733 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
              +       +       +    +  +D      
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYK 254

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.5 bits (147), Expect = 8e-11
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 10/84 (11%)

Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
           T+  H + IT +  +P    L + S D  +  W + +          HS  ++SLD   +
Sbjct: 8   TISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKA 57

Query: 652 KEDLLCSCDNNSEIRYWSINNGSC 675
           +E    S D+  ++   + +    
Sbjct: 58  QEYSSISWDDTLKVNGITKHEFGS 81

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (138), Expect = 1e-09
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 2/89 (2%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
                 +  + +                  +AT S D  + ++  + P   ++    H  
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259

Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
            V +L +       L S   ++ I+ W++
Sbjct: 260 GVNNLLWET--PSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 722 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768
            + ++++     +   L+AH   V++L   T    + S+  D C+K W 
Sbjct: 238 NIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 13/134 (9%), Positives = 38/134 (28%), Gaps = 18/134 (13%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
              + +   +P    L +G +D + + W     +  S  ++H+  I  +  S +      
Sbjct: 13  NKGITALTVNP----LISGSYDGRIMEW-----SSSSMHQDHSNLIVSLDNSKA------ 57

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
                   +   +    +  T     +       +      + + D++  I      +  
Sbjct: 58  ---QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 114

Query: 675 CAGVFKCQSGATQM 688
            +        A  +
Sbjct: 115 KSVRLNSPGSAVSL 128

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 7e-04
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
           L+T +GH+  + +L  +P     L S   +  I  WS ++    
Sbjct: 6   LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQD 44

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.8 bits (140), Expect = 8e-10
 Identities = 20/169 (11%), Positives = 48/169 (28%), Gaps = 15/169 (8%)

Query: 552 PAST-SKVESCHFSPDGKLLATGGHDKKAV----LWCTESFTVKSTLEEHTQWITDVRFS 606
           P++  +      + P    +A        V       ++   V       +  +T V+FS
Sbjct: 13  PSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS 72

Query: 607 PSLS--RLATSSADRTVRVWDTENPDYS-------LRTFTGHSTTVMSLDFHP-SKEDLL 656
           P      L +      V VW       S          F   +  +  + +    +   +
Sbjct: 73  PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132

Query: 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 705
                ++   + S ++G+  G     S         +   + +  + + 
Sbjct: 133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 1e-07
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--MSLDFHPSKEDLLCSCDNNSEIRY 667
            + AT  AD T+RVWD       ++ +T     +    +    +    + S   +  + +
Sbjct: 264 QKFATVGADATIRVWDVTTSK-CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322

Query: 668 WSI 670
           + +
Sbjct: 323 YEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.1 bits (120), Expect = 2e-07
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS---RLATSSA 617
                D +  AT G D    +W   +           Q + + +     +   R+ + S 
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316

Query: 618 DRTVRVWD 625
           D T+  ++
Sbjct: 317 DGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.1 bits (120), Expect = 3e-07
 Identities = 38/287 (13%), Positives = 75/287 (26%), Gaps = 48/287 (16%)

Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTES- 586
           +    R  + G        Q     +S V +  FSP    + L +G    K ++W     
Sbjct: 38  KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97

Query: 587 -------FTVKSTLEEHTQWITDVRFSPSLSRLA--TSSADRTVRVWDTENPDYSLRTFT 637
                    VKS  +     I+D+ +     RL       D        ++ +       
Sbjct: 98  KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG 157

Query: 638 GHSTTVMSLDFHPSKEDLLC--------------------------------SCDNNSEI 665
                             +                                   + + + 
Sbjct: 158 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS 217

Query: 666 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLEL 725
             + I  GS   +      + +        +         +S LD +         T+ +
Sbjct: 218 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRV 277

Query: 726 WNMTENK---TLTLSAHDKLVSSLA-ASTVNGMVASASHDKCVKIWK 768
           W++T +K     TL         +   +T NG + S S D  +  ++
Sbjct: 278 WDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 10/136 (7%), Positives = 31/136 (22%), Gaps = 7/136 (5%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRL-ATSSADRT 620
                + +    +     +    S TV  +              +P        ++    
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 621 VRVWDTENPDYS-----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
           +   D +    +              ++ S    P  +++  + +    +    +     
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 676 AGVFKCQSGATQMRFQ 691
             VF    G      +
Sbjct: 124 LEVFSTADGLEAKPVR 139

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 50.5 bits (119), Expect = 4e-07
 Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T    +   SP       G  ++ A  +  +   +             V F     +L  
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAK-YDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL 308

Query: 615 SSADRTVRVWDTE 627
                 + V++ +
Sbjct: 309 GGTFNDLAVFNPD 321

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 22/272 (8%), Positives = 54/272 (19%), Gaps = 67/272 (24%)

Query: 563 FSPDGK-LLATGGHDKKAVLWCTESFTVK------STLEEHTQWITDVRFSPSLSRLATS 615
            +PD +       H         ++          S   E  + +     SP    +  +
Sbjct: 47  MAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYAT 106

Query: 616 SADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDN--------NSEIR 666
                            L  F+         +   P    +                +I 
Sbjct: 107 VNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIY 166

Query: 667 YWSINNGSCAGVFKCQSG--------------------------ATQMRFQPRLGRILAA 700
              +  G        ++                            T  RF+        A
Sbjct: 167 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA 226

Query: 701 AIENYISILDVETQVCRLKLQ-------------------------TLELWNMTENKTLT 735
            +      +D++T     +                            L  +++ + K + 
Sbjct: 227 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIK 286

Query: 736 LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
            +  D     +A       +        + ++
Sbjct: 287 AANLDHTYYCVAFDKKGDKLYLGGTFNDLAVF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.0 bits (102), Expect = 4e-05
 Identities = 15/125 (12%), Positives = 32/125 (25%), Gaps = 5/125 (4%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR 619
             F  D +  AT       +    ++         + T+       SP          + 
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN- 272

Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
            +  +D +           H  T   + F     D L      +++  ++ +        
Sbjct: 273 RLAKYDLKQRKLIKAANLDH--TYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKVKNI 329

Query: 680 KCQSG 684
           K   G
Sbjct: 330 KLPGG 334

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.8 bits (86), Expect = 0.004
 Identities = 5/37 (13%), Positives = 11/37 (29%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
                F   G  L  GG      ++  ++      ++
Sbjct: 294 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.0 bits (133), Expect = 7e-09
 Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 4/117 (3%)

Query: 537 AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH 596
           AE   G+    +Q +    +                    +  V+   ++    +  E  
Sbjct: 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-M 298

Query: 597 TQWITDVRFSPSLSRL--ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
              I  +  S     L  A S+ D+T+ + D E+ +  LR+          +     
Sbjct: 299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE-LRSVNQLGHGPQVITTADM 354

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 14/177 (7%), Positives = 40/177 (22%), Gaps = 24/177 (13%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---------------------H 596
           +    ++ DG  L   G D   +     +      ++                       
Sbjct: 137 ITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSG 196

Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656
                       +     ++    +   D E  + ++R          S   +P+K    
Sbjct: 197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF 256

Query: 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713
            + +    +  + +   +             +        +        ++  D ET
Sbjct: 257 GAYNV---LESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 25/278 (8%), Positives = 64/278 (23%), Gaps = 61/278 (21%)

Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVR 604
           I  +         +P G+   AT    +  V     +      ++  T       +    
Sbjct: 29  IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA 88

Query: 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT----------VMSLDFHPSKED 654
            SP    LA   +   + +   E     +  +   + +          +  L +      
Sbjct: 89  LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK 148

Query: 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR---------------------FQPR 693
           L     +   +   +        +   ++                            +  
Sbjct: 149 LYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKD 208

Query: 694 LGRILAAAIENYISILDVETQVCRLKL------------------------QTLELWNMT 729
           +      A    +  +D+ET    ++                           LE +++ 
Sbjct: 209 IDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLE 268

Query: 730 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
           +N ++          S+  ST    V        +  +
Sbjct: 269 KNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAY 306

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.9 bits (99), Expect = 9e-05
 Identities = 19/164 (11%), Positives = 40/164 (24%), Gaps = 14/164 (8%)

Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHST--TVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
           +   +    + V DTE      +  T      T M     P       + + +  +    
Sbjct: 4   ILAPARPDKLVVIDTEKMAV-DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 670 INNGSCAGVFKCQSG------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTL 723
           +  G   G     +              P    +        + +   E Q  R+     
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA---- 118

Query: 724 ELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
            L++             + ++ LA +     +     D  V   
Sbjct: 119 -LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDP 161

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 1/68 (1%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
                + +P   S   S + S DG  +  GG       +  E+   K  ++        +
Sbjct: 269 KNASIKRVPLPHS-YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327

Query: 604 RFSPSLSR 611
                 +R
Sbjct: 328 ASVRLFTR 335

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.2 bits (119), Expect = 6e-07
 Identities = 13/127 (10%), Positives = 32/127 (25%), Gaps = 7/127 (5%)

Query: 563 FSPDGK--LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
              D +     T     +  L    ++ +K+ L+     +   R S S   L     D  
Sbjct: 26  NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGK 84

Query: 621 VRVWDTENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
           V + D    +      ++  +   +   S       +  +       +            
Sbjct: 85  VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144

Query: 677 GVFKCQS 683
            +   + 
Sbjct: 145 KIQSTRG 151

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 16/100 (16%), Positives = 26/100 (26%), Gaps = 7/100 (7%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 612
           V     S  G+ L   G D K  +         +  E     E     T           
Sbjct: 64  VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA 123

Query: 613 -ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
            A +       + D E  +   +  +    T    ++HP 
Sbjct: 124 IAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPE 162

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.3 bits (106), Expect = 2e-05
 Identities = 12/99 (12%), Positives = 22/99 (22%), Gaps = 5/99 (5%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 612
           V     S  G+ L   G D +  +    +       E     E     +           
Sbjct: 64  VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT 123

Query: 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
              +                 +  +    TV +  +HP 
Sbjct: 124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE 162

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 22/130 (16%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA---- 613
           V S     DG +   G   K        ++   + L+        ++  P  S L     
Sbjct: 267 VWSTSHLGDGSISLIGTDPKN---HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT 323

Query: 614 ---TSSADRTVRVWDTEN--------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--- 659
               +   ++V V+D +N        P          +  V+  +++   +++  S    
Sbjct: 324 FNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 383

Query: 660 -DNNSEIRYW 668
            +++S +   
Sbjct: 384 KNDSSALVVV 393

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (93), Expect = 5e-04
 Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 1/67 (1%)

Query: 614 TSSADRTVRVWDT-ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672
            S   + + VW+       +L         V  +   P K  L         +  + I  
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 673 GSCAGVF 679
              A  F
Sbjct: 69  DDGALTF 75

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN 628
             T +  + + +         +  +P   ++    S   TV V DT  
Sbjct: 229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 15/122 (12%), Positives = 36/122 (29%), Gaps = 4/122 (3%)

Query: 572 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPD 630
                    +    S  V +T+   +        SP  +++   ++    V + DT   +
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRF 690
                  G S   +++     +     +   +S +      + + AG  K       +  
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVY--VTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL 123

Query: 691 QP 692
            P
Sbjct: 124 SP 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	768
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.96
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.95
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.94
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.93
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.92
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.91
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.91
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.9
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.89
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.89
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.83
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.81
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.81
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.8
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.76
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.72
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.69
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.69
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.67
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.65
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.64
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.56
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.56
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.39
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.37
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.37
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.23
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.15
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.07
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.05
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.03
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.02
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.83
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.81
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.78
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.71
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.7
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.65
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.62
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.56
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.54
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.53
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.5
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.47
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.38
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.33
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.08
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.08
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.07
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.03
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.94
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.36
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.34
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.21
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.12
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.09
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.05
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.83
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.69
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.6
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.34
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.3
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.98
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.8
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.58
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.55
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.5
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	95.38
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.29
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.92
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.69
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.56
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.34
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.15
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.53
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.03
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.87
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.0
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	90.73
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.46
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	87.56
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	86.05
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	82.31
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	81.3
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	80.87

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-31  Score=284.44  Aligned_cols=258  Identities=17%  Similarity=0.252  Sum_probs=221.6

Q ss_pred             cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 004207          494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATG  573 (768)
Q Consensus       494 ~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSg  573 (768)
                      ...+....+++.+.+|++|+ |+.|++|+.......              .........+|.+.|.+|+|+||+++|++|
T Consensus        51 ~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~--------------~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~  115 (337)
T d1gxra_          51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK--------------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVG  115 (337)
T ss_dssp             SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC--------------SCSEEEECSCTTSBEEEEEECTTSSEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccc--------------ceeEEeeecCCCCcEEEEEEcCCCCEEEEe
Confidence            34455666777889999998 899999976543211              111234456899999999999999999999


Q ss_pred             eCCCcEEEEECCC--CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCC
Q 004207          574 GHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS  651 (768)
Q Consensus       574 s~Dg~I~VWdl~t--~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~  651 (768)
                      +.||.|+|||+..  .+....+..|...|.+++|+|++.+|++++.|+.|++||+.+++. .....+|...|.+++|+++
T Consensus       116 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~  194 (337)
T d1gxra_         116 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISND  194 (337)
T ss_dssp             ESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTT
T ss_pred             eccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            9999999999874  456677888999999999999999999999999999999998764 6777889999999999999


Q ss_pred             CCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc----------
Q 004207          652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ----------  721 (768)
Q Consensus       652 g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~----------  721 (768)
                      +. .+++|+.|+.|++||+++++.+..+.+...|.+++|+|++.++++++.|+.|++||+++........          
T Consensus       195 ~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~  273 (337)
T d1gxra_         195 GT-KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF  273 (337)
T ss_dssp             SS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEE
T ss_pred             cc-ccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEE
Confidence            77 5568888999999999999999999989999999999999999999999999999998765432211          


Q ss_pred             --------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 --------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 --------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                    .|++||..+++.+....|...|++++|+|++++|++|+.||+|+|||
T Consensus       274 s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence                          79999999998887778999999999999999999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=8.5e-30  Score=266.56  Aligned_cols=223  Identities=22%  Similarity=0.430  Sum_probs=191.9

Q ss_pred             eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (768)
Q Consensus       545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVW  624 (768)
                      ++..+++++|.+.|+||+|+|++.+||||+.||+|+|||+.+++.+..+..|...|.+++|+|++.+|++|+.|++|++|
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCCe---eEE-----------------------------------------EeecCCCCeEEEEEeCCCCeEEEEEe
Q 004207          625 DTENPDY---SLR-----------------------------------------TFTGHSTTVMSLDFHPSKEDLLCSCD  660 (768)
Q Consensus       625 Dl~t~~~---~~~-----------------------------------------~~~~h~~~V~slafsp~g~~lLaSgs  660 (768)
                      +......   ...                                         ....+...+..+.+.+.+. ++++++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  203 (340)
T d1tbga_         125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGA  203 (340)
T ss_dssp             ESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-EEEEEE
T ss_pred             cccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccc-eeEEee
Confidence            9764221   011                                         1122445566677776654 677899


Q ss_pred             CCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc------------------
Q 004207          661 NNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ------------------  721 (768)
Q Consensus       661 ~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~------------------  721 (768)
                      .|+.|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||+........+.                  
T Consensus       204 ~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  283 (340)
T d1tbga_         204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSC
T ss_pred             cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCC
Confidence            999999999999999998875 5679999999999999999999999999998765543321                  


Q ss_pred             ---------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 ---------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 ---------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                               .|++||+.+++.+ .+.+|.+.|++|+|+|++.+|+|||.||.|+|||
T Consensus       284 ~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence                     7999999887766 6778999999999999999999999999999998

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=5e-30  Score=272.43  Aligned_cols=237  Identities=19%  Similarity=0.205  Sum_probs=199.0

Q ss_pred             ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004207          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (768)
Q Consensus       502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~V  581 (768)
                      .++.+..++.++ ++.|.+|.....                   .....+.+|.+.|+|++|+|+|++||+|+.||+|+|
T Consensus        25 ~~~~g~~l~~~~-~~~v~i~~~~~~-------------------~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~i   84 (311)
T d1nr0a1          25 NTPAGDKIQYCN-GTSVYTVPVGSL-------------------TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRI   84 (311)
T ss_dssp             ECTTSSEEEEEE-TTEEEEEETTCS-------------------SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EcCCCCEEEEEe-CCEEEEEECCCC-------------------ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEee
Confidence            344556666664 567888855322                   123456799999999999999999999999999999


Q ss_pred             EECCCCeE--EEEeccCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEE
Q 004207          582 WCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC  657 (768)
Q Consensus       582 Wdl~t~~~--~~tl~~h~~~V~sl~fspdg~~LaTgs~D--gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLa  657 (768)
                      ||+.+.+.  ...+..|...|.+++|+|++++|++++.+  ..++||++++++. ...+.+|...|++++|+|+++.+|+
T Consensus        85 wd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~-~~~l~~h~~~v~~v~~~~~~~~~l~  163 (311)
T d1nr0a1          85 WDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS-NGNLTGQARAMNSVDFKPSRPFRII  163 (311)
T ss_dssp             EESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB-CBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred             eeeeccccccccccccccCccccccccccccccccccccccccccccccccccc-cccccccccccccccccccceeeec
Confidence            99988654  35678899999999999999999999864  5699999998765 6778899999999999999998899


Q ss_pred             EEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEe
Q 004207          658 SCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTL  736 (768)
Q Consensus       658 Sgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l  736 (768)
                      +|+.|+.|++||++++++...+.. ...|.++.|+|++.++++++.|+.|++||+.+......+.      ..   ....
T Consensus       164 sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~------~~---~~~~  234 (311)
T d1nr0a1         164 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE------DD---SLKN  234 (311)
T ss_dssp             EEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB------CT---TSSS
T ss_pred             ccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccc------cc---cccc
Confidence            999999999999999998888865 5679999999999999999999999999999876543322      11   1234


Q ss_pred             ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          737 SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       737 ~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .+|...|++++|+|++.+|++|+.||.|+|||
T Consensus       235 ~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd  266 (311)
T d1nr0a1         235 VAHSGSVFGLTWSPDGTKIASASADKTIKIWN  266 (311)
T ss_dssp             CSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccccccccccccCCCCCEEEEEeCCCeEEEEE
Confidence            57999999999999999999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.1e-29  Score=258.89  Aligned_cols=252  Identities=21%  Similarity=0.338  Sum_probs=209.1

Q ss_pred             ccccCCCCEEEeecCCCcEEEeecCCCCCCCCccc-----c-c-cc----------------cCCCceeeEEEEecCCCC
Q 004207          500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVG-----R-S-AE----------------VGKGFTFTEFQLIPASTS  556 (768)
Q Consensus       500 ~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~-----~-~-~~----------------~~~~~~~~~~~~l~~H~~  556 (768)
                      ..+.+.+++|++|+.|++|++|+............     . + +.                ............+.+|..
T Consensus        23 l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (317)
T d1vyhc1          23 VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH  102 (317)
T ss_dssp             EEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSS
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccc
Confidence            33444567999999999999997654321110000     0 0 00                000122334566778999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEe
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~  636 (768)
                      .+.++.|++++..+++++.|+.+++||+.+++.+..+.+|...+.+++|++++.+|++++.|+.|++|++.++.. +..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~-~~~~  181 (317)
T d1vyhc1         103 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC-KAEL  181 (317)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EEEE
T ss_pred             cceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeecccee-eEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998775 7788


Q ss_pred             ecCCCCeEEEEEeCCCC-------------------eEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCE
Q 004207          637 TGHSTTVMSLDFHPSKE-------------------DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR  696 (768)
Q Consensus       637 ~~h~~~V~slafsp~g~-------------------~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~  696 (768)
                      .+|...+.+++|+|++.                   .++++++.|+.|++||+++++++..+.. ...|.+++|+|++.+
T Consensus       182 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  261 (317)
T d1vyhc1         182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF  261 (317)
T ss_dssp             CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSC
T ss_pred             ecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCE
Confidence            88999999999988542                   3577899999999999999999998875 567999999999999


Q ss_pred             EEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          697 ILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       697 llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |++++.|+.|++||+.+++.+.                .+.+|.+.|++++|+|++.+|+||+.||+|+|||
T Consensus       262 l~s~~~dg~i~iwd~~~~~~~~----------------~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         262 ILSCADDKTLRVWDYKNKRCMK----------------TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEETTTEEEEECCTTSCCCE----------------EEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEECCCeEEEEECCCCcEEE----------------EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999998765432                3458999999999999999999999999999998

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.9e-29  Score=267.26  Aligned_cols=272  Identities=21%  Similarity=0.345  Sum_probs=207.6

Q ss_pred             CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 004207          493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT  572 (768)
Q Consensus       493 ~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaS  572 (768)
                      |...+...++.+.+++|++|+ |++|++|...+............ ...............|...|++|+|+|++++|++
T Consensus        61 H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA-ANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccc-ccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            344555666777789999997 89999997755421111000000 0001111223345678899999999999999999


Q ss_pred             EeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC
Q 004207          573 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK  652 (768)
Q Consensus       573 gs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g  652 (768)
                      |+.||.|++||...++.+..+.+|...|.+++|++++..+++++.++.|++||+++... ..... +.....++.+++..
T Consensus       139 ~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~~  216 (388)
T d1erja_         139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLS-IEDGVTTVAVSPGD  216 (388)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccc-ccccc-cccccccccccCCC
Confidence            99999999999999999999999999999999999999999999999999999997654 44444 44556777777766


Q ss_pred             CeEEEEEeCCCcEEEEECCCCeeEEEEec--------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEee------
Q 004207          653 EDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL------  718 (768)
Q Consensus       653 ~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--------~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~------  718 (768)
                      ..+|++|+.|+.|++||++++..+..+..        ...|.+++|+|++.+|++++.|+.|++||+.+.....      
T Consensus       217 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  296 (388)
T d1erja_         217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN  296 (388)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred             CCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccc
Confidence            66888999999999999999888776642        4569999999999999999999999999986542211      


Q ss_pred             -------------------------------ecceeEEeecCCCceE-EeccCCCCeeEEEE------eCCCCEEEEEEC
Q 004207          719 -------------------------------KLQTLELWNMTENKTL-TLSAHDKLVSSLAA------STVNGMVASASH  760 (768)
Q Consensus       719 -------------------------------~~~~I~iwd~~~~~~~-~l~~H~~~I~sla~------spdg~~LaSgs~  760 (768)
                                                     ....|++||+.+++.+ ++.+|.+.|+++++      +|++.+||||+.
T Consensus       297 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~  376 (388)
T d1erja_         297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG  376 (388)
T ss_dssp             --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred             ccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeC
Confidence                                           0117999999988765 67899999999985      568899999999


Q ss_pred             CCcEEEeC
Q 004207          761 DKCVKIWK  768 (768)
Q Consensus       761 DG~V~IWD  768 (768)
                      ||+|+|||
T Consensus       377 Dg~I~iW~  384 (388)
T d1erja_         377 DCKARIWK  384 (388)
T ss_dssp             TSEEEEEE
T ss_pred             CCEEEEEe
Confidence            99999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=6.9e-29  Score=263.57  Aligned_cols=241  Identities=17%  Similarity=0.272  Sum_probs=197.4

Q ss_pred             cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 004207          494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATG  573 (768)
Q Consensus       494 ~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSg  573 (768)
                      ...+....+.+.+++|++|+.|++|++|......                 ......+..|.++|.+++|+|++++|+++
T Consensus        58 ~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~-----------------~~~~~~~~~~~~~v~~v~~s~d~~~l~~~  120 (311)
T d1nr0a1          58 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT-----------------HILKTTIPVFSGPVKDISWDSESKRIAAV  120 (311)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT-----------------CCEEEEEECSSSCEEEEEECTTSCEEEEE
T ss_pred             CCCEEEEEEeCCCCeEeccccCceEeeeeeeccc-----------------cccccccccccCccccccccccccccccc
Confidence            3445566678889999999999999999654331                 11234467899999999999999999999


Q ss_pred             eC--CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeC
Q 004207          574 GH--DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP  650 (768)
Q Consensus       574 s~--Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~-LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp  650 (768)
                      +.  +..++||++++++...++.+|...|++++|+|++.+ |++|+.|++|++||+++++. ...+..|...|+++.|+|
T Consensus       121 ~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~-~~~~~~~~~~i~~v~~~p  199 (311)
T d1nr0a1         121 GEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-KSTFGEHTKFVHSVRYNP  199 (311)
T ss_dssp             ECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-EEEECCCSSCEEEEEECT
T ss_pred             cccccccccccccccccccccccccccccccccccccceeeeccccccccccccccccccc-ccccccccccccccccCc
Confidence            86  456999999999999999999999999999999875 88899999999999998664 778888999999999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCeeEEEEec--------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecce
Q 004207          651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQT  722 (768)
Q Consensus       651 ~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--------~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~  722 (768)
                      ++. +|++++.|+.|++||++++..+..+..        ...|.+++|+|++.+|++++.|+.|+|||++++++...+. 
T Consensus       200 ~~~-~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~-  277 (311)
T d1nr0a1         200 DGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP-  277 (311)
T ss_dssp             TSS-EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred             ccc-ccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEE-
Confidence            977 666889999999999999988877753        3569999999999999999999999999999877643221 


Q ss_pred             eEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          723 LELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       723 I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                           ..       ..+...+.++.|+  +.+|++++.||.|++||
T Consensus       278 -----~~-------~~~~~~~~~~~~~--~~~l~s~s~dG~i~~wd  309 (311)
T d1nr0a1         278 -----VG-------TRIEDQQLGIIWT--KQALVSISANGFINFVN  309 (311)
T ss_dssp             -----CC-------SSGGGCEEEEEEC--SSCEEEEETTCCEEEEE
T ss_pred             -----CC-------CCccceEEEEEec--CCEEEEEECCCEEEEEe
Confidence                 10       0112234455554  66899999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-27  Score=254.89  Aligned_cols=222  Identities=16%  Similarity=0.288  Sum_probs=192.4

Q ss_pred             eeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----EEEEeccCCCCEEEEEEcCCCCEEEEEeCC
Q 004207          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHTQWITDVRFSPSLSRLATSSAD  618 (768)
Q Consensus       544 ~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~-----~~~tl~~h~~~V~sl~fspdg~~LaTgs~D  618 (768)
                      ..+.+..+ .|...|+|++|+|+|++|++|+ ||.|+|||+.+..     ......+|.+.|.+|+|+|++++|++|+.|
T Consensus        41 ~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d  118 (337)
T d1gxra_          41 HARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA  118 (337)
T ss_dssp             EEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred             CceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc
Confidence            34555665 8999999999999999999987 8999999987643     223446799999999999999999999999


Q ss_pred             CcEEEEECCCCC-eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCE
Q 004207          619 RTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR  696 (768)
Q Consensus       619 gtIrVWDl~t~~-~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~  696 (768)
                      |+|++||+.... .....+..|...|.+++|+|++. ++++++.|+.|++||++++++...... ...+.+++|++++..
T Consensus       119 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~  197 (337)
T d1gxra_         119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK  197 (337)
T ss_dssp             SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             cccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999997644 33567788999999999999976 666889999999999999998877764 567999999999999


Q ss_pred             EEEEEcCCeEEEEECCCceEeeecc------------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCC
Q 004207          697 ILAAAIENYISILDVETQVCRLKLQ------------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVN  752 (768)
Q Consensus       697 llags~Dg~I~IwD~~t~~~~~~~~------------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg  752 (768)
                      +++++.|+.|++||++++.....+.                        .+++||+..+.......|...|++++|+|++
T Consensus       198 ~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g  277 (337)
T d1gxra_         198 LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG  277 (337)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTS
T ss_pred             cccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCCC
Confidence            9999999999999998876544322                        7899999999988889999999999999999


Q ss_pred             CEEEEEECCCcEEEeC
Q 004207          753 GMVASASHDKCVKIWK  768 (768)
Q Consensus       753 ~~LaSgs~DG~V~IWD  768 (768)
                      .+|++++.||.|+|||
T Consensus       278 ~~l~s~s~Dg~i~iwd  293 (337)
T d1gxra_         278 KWFVSTGKDNLLNAWR  293 (337)
T ss_dssp             SEEEEEETTSEEEEEE
T ss_pred             CEEEEEeCCCeEEEEE
Confidence            9999999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=9.3e-28  Score=246.42  Aligned_cols=218  Identities=24%  Similarity=0.460  Sum_probs=196.8

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t  628 (768)
                      ..+++|.++|++|+|+|++++||||+.||+|+|||+.+++++.++.+|...|.+++|+|++.++++++.++++.+|+...
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG   90 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEE
Q 004207          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYIS  707 (768)
Q Consensus       629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~  707 (768)
                      ... ...+.+|...+.++.|++++. .+++++.|+.+++||++++..+..+.. ...+.+++|++++.+|++++.|+.|+
T Consensus        91 ~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~  168 (317)
T d1vyhc1          91 FEC-IRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  168 (317)
T ss_dssp             SCE-EECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ccc-ccccccccccceeeeccCCCc-eEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEE
Confidence            664 667778999999999999987 556888999999999999999888875 55688999999999999999999999


Q ss_pred             EEECCCceEeeecc---------------------------------------------eeEEeecCCCceE-EeccCCC
Q 004207          708 ILDVETQVCRLKLQ---------------------------------------------TLELWNMTENKTL-TLSAHDK  741 (768)
Q Consensus       708 IwD~~t~~~~~~~~---------------------------------------------~I~iwd~~~~~~~-~l~~H~~  741 (768)
                      +|++.+......+.                                             .+++||..+++.+ .+.+|..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  248 (317)
T d1vyhc1         169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  248 (317)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC
Confidence            99998765443221                                             5789999888765 6778999


Q ss_pred             CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          742 LVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       742 ~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      .|.+++|+|++.+|++|+.||.|+|||
T Consensus       249 ~v~~~~~~~~~~~l~s~~~dg~i~iwd  275 (317)
T d1vyhc1         249 WVRGVLFHSGGKFILSCADDKTLRVWD  275 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEE
Confidence            999999999999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=6.1e-28  Score=261.27  Aligned_cols=232  Identities=17%  Similarity=0.225  Sum_probs=188.4

Q ss_pred             cccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 004207          501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV  580 (768)
Q Consensus       501 ~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~  580 (768)
                      ++.+.+.++++|+.|+.|++|...                 ...+..+..+.+|.++|.+|+|+|++++|++|+.|++|+
T Consensus        14 ~~s~dg~~la~~~~~~~i~iw~~~-----------------~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~   76 (371)
T d1k8kc_          14 AWNKDRTQIAICPNNHEVHIYEKS-----------------GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAY   76 (371)
T ss_dssp             EECTTSSEEEEECSSSEEEEEEEE-----------------TTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             EECCCCCEEEEEeCCCEEEEEECC-----------------CCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEE
Confidence            334456799999999999999542                 223456778899999999999999999999999999999


Q ss_pred             EEECCCCeEE--EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe---eEEEeecCCCCeEEEEEeCCCCeE
Q 004207          581 LWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDL  655 (768)
Q Consensus       581 VWdl~t~~~~--~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~---~~~~~~~h~~~V~slafsp~g~~l  655 (768)
                      |||+.++...  ..+.+|...|++++|+|++++|++++.|++|++|+++....   .......|...|.+++|+|++. +
T Consensus        77 vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~  155 (371)
T d1k8kc_          77 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-L  155 (371)
T ss_dssp             EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-E
T ss_pred             EEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccccccccc-c
Confidence            9999876544  45577889999999999999999999999999999876543   2344567889999999999977 6


Q ss_pred             EEEEeCCCcEEEEECCCCe------------------eEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceE
Q 004207          656 LCSCDNNSEIRYWSINNGS------------------CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVC  716 (768)
Q Consensus       656 LaSgs~Dg~I~iWDl~sg~------------------~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~  716 (768)
                      |++|+.|+.|++||+....                  .+.... +...|.+++|+|++.+|++++.|+.|++||+.+...
T Consensus       156 l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~  235 (371)
T d1k8kc_         156 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA  235 (371)
T ss_dssp             EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE
T ss_pred             eeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccc
Confidence            6799999999999986432                  223222 245689999999999999999999999999887654


Q ss_pred             eeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          717 RLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       717 ~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      ..                .+..|..+|.+++|+|++.+|++| .|+.+++|
T Consensus       236 ~~----------------~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~  269 (371)
T d1k8kc_         236 VA----------------TLASETLPLLAVTFITESSLVAAG-HDCFPVLF  269 (371)
T ss_dssp             EE----------------EEECSSCCEEEEEEEETTEEEEEE-TTSSCEEE
T ss_pred             ee----------------eeecccccceeeeecCCCCEEEEE-cCCceEEE
Confidence            32                344788999999999999877765 57777665

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.5e-26  Score=246.55  Aligned_cols=215  Identities=29%  Similarity=0.509  Sum_probs=181.2

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec------------------cCCCCEEEEEEcCCCCEE
Q 004207          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------------------EHTQWITDVRFSPSLSRL  612 (768)
Q Consensus       551 l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~------------------~h~~~V~sl~fspdg~~L  612 (768)
                      ..+|++.|+||+|+|||++||+|+ |++|+|||+.+++.+..+.                  .|...|++|+|+|++++|
T Consensus        58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l  136 (388)
T d1erja_          58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL  136 (388)
T ss_dssp             EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred             eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence            347999999999999999999986 8999999999988776654                  356679999999999999


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEec
Q 004207          613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP  692 (768)
Q Consensus       613 aTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp  692 (768)
                      ++|+.||+|++||...++. +..+.+|...|.+++|++++. .+++++.++.|++||+++..............++.+.+
T Consensus       137 ~s~~~dg~v~i~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  214 (388)
T d1erja_         137 ATGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP  214 (388)
T ss_dssp             EEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred             eeccccccccccccccccc-ccccccccccccccccccccc-cccccccceeeeeeeccccccccccccccccccccccC
Confidence            9999999999999998765 777888999999999999876 55688889999999999999888888877777777766


Q ss_pred             -CCCEEEEEEcCCeEEEEECCCceEeeec--------------------------------ceeEEeecCCCce------
Q 004207          693 -RLGRILAAAIENYISILDVETQVCRLKL--------------------------------QTLELWNMTENKT------  733 (768)
Q Consensus       693 -~~~~llags~Dg~I~IwD~~t~~~~~~~--------------------------------~~I~iwd~~~~~~------  733 (768)
                       ++.+|++++.|+.|++||..+......+                                ..+++||+.....      
T Consensus       215 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  294 (388)
T d1erja_         215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT  294 (388)
T ss_dssp             TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred             CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccc
Confidence             6678889999999999999876543221                                1688998865432      


Q ss_pred             -------EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          734 -------LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       734 -------~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                             .....|...|++++|+|++.+|++|+.||.|+|||
T Consensus       295 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd  336 (388)
T d1erja_         295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD  336 (388)
T ss_dssp             ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred             ccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence                   24557889999999999999999999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.6e-26  Score=244.16  Aligned_cols=247  Identities=15%  Similarity=0.189  Sum_probs=187.6

Q ss_pred             ccCccccC--CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 004207          497 SAPNQLTD--MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG  574 (768)
Q Consensus       497 ~~~~~l~~--~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs  574 (768)
                      +....+.+  .+.+|++|+.|++|++|........           ..........+..|.++|.+++|++++++|++++
T Consensus        66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  134 (325)
T d1pgua1          66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES-----------NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG  134 (325)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG-----------TEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcce-----------eeeecccccccccccCcEEEEEECCCCCccceee
Confidence            33444443  4579999999999999965332110           1112223345678999999999999999988776


Q ss_pred             C--CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCCeeEE--EeecCCCCeEEEEEe
Q 004207          575 H--DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLR--TFTGHSTTVMSLDFH  649 (768)
Q Consensus       575 ~--Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~-LaTgs~DgtIrVWDl~t~~~~~~--~~~~h~~~V~slafs  649 (768)
                      .  ++.+++|+.++++.+..+.+|...|++++|+|++.+ +++++.|+.|++||+...+....  ....|...|.+++|+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~  214 (325)
T d1pgua1         135 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS  214 (325)
T ss_dssp             CCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC
T ss_pred             ccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeec
Confidence            4  678999999999999999999999999999998765 77899999999999987654322  234677889999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-CCeeEEEEe---cCCCEEEEEEcCCeEEEEECCCceEeeecceeEE
Q 004207          650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQ---PRLGRILAAAIENYISILDVETQVCRLKLQTLEL  725 (768)
Q Consensus       650 p~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-~~i~sl~fs---p~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~i  725 (768)
                      |++..+|++|+.|+.|++||+++++++..+..+ ..+..+.|+   +++.+|++++.|+.|+|||+++++++..+     
T Consensus       215 pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~-----  289 (325)
T d1pgua1         215 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW-----  289 (325)
T ss_dssp             STTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEE-----
T ss_pred             cccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEE-----
Confidence            987778989999999999999999999888753 334444443   67889999999999999999987664322     


Q ss_pred             eecCCCceEEeccCCCCeeEEEEeCC-CCEEEEEECCCcEEEeC
Q 004207          726 WNMTENKTLTLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK  768 (768)
Q Consensus       726 wd~~~~~~~~l~~H~~~I~sla~spd-g~~LaSgs~DG~V~IWD  768 (768)
                               ....|...+..+++.+. +.+|+++|.||.|+|||
T Consensus       290 ---------~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd  324 (325)
T d1pgua1         290 ---------TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE  324 (325)
T ss_dssp             ---------ECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             ---------EecCCcccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence                     12233333444444332 35899999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=4.5e-26  Score=246.41  Aligned_cols=275  Identities=11%  Similarity=0.094  Sum_probs=203.7

Q ss_pred             ccCCCCCceEEEEecCCC----------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCce
Q 004207          475 QHNGASSKSLLMFGSDGM----------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT  544 (768)
Q Consensus       475 ~~s~s~~~~~l~~~~~~~----------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~  544 (768)
                      ...++.+..+.+|...+.          |...+....+.+.+++|++|+.|++|++|....                 ..
T Consensus        22 la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~-----------------~~   84 (371)
T d1k8kc_          22 IAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG-----------------RT   84 (371)
T ss_dssp             EEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET-----------------TE
T ss_pred             EEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc-----------------cc
Confidence            344556667777776432          233455666778899999999999999995432                 23


Q ss_pred             eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE----EEEeccCCCCEEEEEEcCCCCEEEEEeCCCc
Q 004207          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTLEEHTQWITDVRFSPSLSRLATSSADRT  620 (768)
Q Consensus       545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~----~~tl~~h~~~V~sl~fspdg~~LaTgs~Dgt  620 (768)
                      +.....+.+|...|++++|+|++++|++|+.|++|++|+++....    ......|...|.+++|+|++.+|++|+.|++
T Consensus        85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_          85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence            345566778999999999999999999999999999998776442    3445678899999999999999999999999


Q ss_pred             EEEEECCCCC-----------------eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-C
Q 004207          621 VRVWDTENPD-----------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-Q  682 (768)
Q Consensus       621 IrVWDl~t~~-----------------~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~  682 (768)
                      |++||+....                 ..+....+|...|.+++|+|++. +|++++.|+.|++||+.++..+..+.. .
T Consensus       165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  243 (371)
T d1k8kc_         165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASET  243 (371)
T ss_dssp             EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred             EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccc-cccccccCCcceEEeeecccceeeeeccc
Confidence            9999986432                 13456677899999999999987 567889999999999999999888876 4


Q ss_pred             CCeeEEEEecCCCEEEEEEcCCeEEEEECCC--ceEeeecc-----ee-----------EEeecC-------CCceEEec
Q 004207          683 SGATQMRFQPRLGRILAAAIENYISILDVET--QVCRLKLQ-----TL-----------ELWNMT-------ENKTLTLS  737 (768)
Q Consensus       683 ~~i~sl~fsp~~~~llags~Dg~I~IwD~~t--~~~~~~~~-----~I-----------~iwd~~-------~~~~~~l~  737 (768)
                      .+|.+++|+|++. +++++.|+.+.+|+...  ........     ..           ..++..       ........
T Consensus       244 ~~v~s~~fs~d~~-~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (371)
T d1k8kc_         244 LPLLAVTFITESS-LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS  322 (371)
T ss_dssp             CCEEEEEEEETTE-EEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSS
T ss_pred             ccceeeeecCCCC-EEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecc
Confidence            5799999999864 55667788766655433  32211100     00           000000       00001123


Q ss_pred             cCCCCeeEEEEeCCC----CEEEEEECCCcEEEeC
Q 004207          738 AHDKLVSSLAASTVN----GMVASASHDKCVKIWK  768 (768)
Q Consensus       738 ~H~~~I~sla~spdg----~~LaSgs~DG~V~IWD  768 (768)
                      .|.+.|+++++.+.+    ..|+|+|.||.|+|||
T Consensus       323 ~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~  357 (371)
T d1k8kc_         323 LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  357 (371)
T ss_dssp             SSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             cccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence            599999999998755    3699999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=6.9e-26  Score=235.15  Aligned_cols=207  Identities=15%  Similarity=0.159  Sum_probs=169.6

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl-~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      ..+.+.||.+.|+||+|+||+++|++|+.||+|+|||+++++.+..+ ..|...|++++|+|++. +++++.|++|++|+
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~   82 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVP   82 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEEC
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEec
Confidence            35778999999999999999999999999999999999999988887 46899999999999986 55667899999999


Q ss_pred             CCCCCe-------------e-------------------EEE-------eecCCCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 004207          626 TENPDY-------------S-------------------LRT-------FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (768)
Q Consensus       626 l~t~~~-------------~-------------------~~~-------~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~  666 (768)
                      ......             .                   +..       .......+.+++|+|++. +|++|+.|+.|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~  161 (299)
T d1nr0a2          83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ-FVAVGGQDSKVH  161 (299)
T ss_dssp             SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC-EEEEEETTSEEE
T ss_pred             cCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence            753210             0                   000       011234578888999876 666899999999


Q ss_pred             EEECCCCeeEE--EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCee
Q 004207          667 YWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVS  744 (768)
Q Consensus       667 iWDl~sg~~i~--~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~  744 (768)
                      +||+++++...  ...+...|.+++|+|++.++++++.|+.|++||+.+.......             ..+..|...|+
T Consensus       162 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~-------------~~~~~h~~~v~  228 (299)
T d1nr0a2         162 VYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT-------------NSWTFHTAKVA  228 (299)
T ss_dssp             EEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC-------------CCCCCCSSCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------ccccccccccc
Confidence            99998877543  3445778999999999999999999999999999875443221             13457899999


Q ss_pred             EEEEeCCCCEEEEEECCCcEEEeC
Q 004207          745 SLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       745 sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +++|+|++.+|++|+.||.|+|||
T Consensus       229 ~l~~s~~~~~l~sgs~dg~i~iwd  252 (299)
T d1nr0a2         229 CVSWSPDNVRLATGSLDNSVIVWN  252 (299)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cccccccccceEEEcCCCEEEEEE
Confidence            999999999999999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=5.1e-25  Score=230.01  Aligned_cols=239  Identities=17%  Similarity=0.264  Sum_probs=188.7

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      .+++|++|+.|++|++|+....                   +.+..+.+|.+.|++|+|+++ .+|++|+.|++|++|++
T Consensus        22 ~~~~l~tgs~Dg~i~vWd~~~~-------------------~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~   81 (355)
T d1nexb2          22 EDNYVITGADDKMIRVYDSINK-------------------KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI   81 (355)
T ss_dssp             ETTEEEEEETTTEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred             CCCEEEEEeCCCeEEEEECCCC-------------------cEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence            4679999999999999965322                   356778899999999999985 58999999999999999


Q ss_pred             CCCeEEEEeccCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe-------------------------------
Q 004207          585 ESFTVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-------------------------------  631 (768)
Q Consensus       585 ~t~~~~~tl~~h~--~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~-------------------------------  631 (768)
                      ...+.......+.  ..+..+.+++++.++++++.|++|++||+++...                               
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d1nexb2          82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  161 (355)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred             cccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence            9888776654433  3345556677778888888888888888753210                               


Q ss_pred             -------------------------------eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe
Q 004207          632 -------------------------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (768)
Q Consensus       632 -------------------------------~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~  680 (768)
                                                     .+....++...+.++.|++++. ++++++.|+.|++||++++.++..+.
T Consensus       162 ~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~  240 (355)
T d1nexb2         162 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMYTLQ  240 (355)
T ss_dssp             SCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccce-eeecccccceEEeeeccccccccccc
Confidence                                           1223345667788899999877 55688899999999999999998887


Q ss_pred             c-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-----------------------eeEEeecCCCceE--
Q 004207          681 C-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-----------------------TLELWNMTENKTL--  734 (768)
Q Consensus       681 ~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-----------------------~I~iwd~~~~~~~--  734 (768)
                      . ...|.+++|++  .+|++++.|+.|++||+.+........                       .|++||+.+++.+  
T Consensus       241 ~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~  318 (355)
T d1nexb2         241 GHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA  318 (355)
T ss_dssp             CCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCS
T ss_pred             ccccccccccccc--ceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEE
Confidence            5 45688888875  589999999999999998765433221                       7999999998876  


Q ss_pred             EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          735 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       735 ~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      .+.+|.+.|++++|+|+ .+|++++.||.++||
T Consensus       319 ~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~  350 (355)
T d1nexb2         319 NILKDADQIWSVNFKGK-TLVAAVEKDGQSFLE  350 (355)
T ss_dssp             CTTTTCSEEEEEEEETT-EEEEEEESSSCEEEE
T ss_pred             EecCCCCCEEEEEEcCC-eEEEEEECCCcEEEE
Confidence            45689999999999986 578889999998776

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=3.1e-25  Score=230.19  Aligned_cols=236  Identities=13%  Similarity=0.129  Sum_probs=175.1

Q ss_pred             ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEe-cCCCCCeEEEEEcCCCCEEEEEeC
Q 004207          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGH  575 (768)
Q Consensus       497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l-~~H~~~I~sl~fSpdg~~LaSgs~  575 (768)
                      +...++.+.+++|++|+.|++|++|+...+.                   .+..+ .+|...|++++|+|++.+ ++++.
T Consensus        15 V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~-------------------~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~   74 (299)
T d1nr0a2          15 ITALSSSADGKTLFSADAEGHINSWDISTGI-------------------SNRVFPDVHATMITGIKTTSKGDL-FTVSW   74 (299)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCC-------------------EEECSSCSCSSCEEEEEECTTSCE-EEEET
T ss_pred             cEEEEECCCCCEEEEEcCCCeEEEEECCCCc-------------------EEEEEcCCCCCcEEEEEeecccee-ecccc
Confidence            3344455567899999999999999654321                   12233 468888999999988864 45567


Q ss_pred             CCcEEEEECCCCe--------------EE-------------------EEe-------ccCCCCEEEEEEcCCCCEEEEE
Q 004207          576 DKKAVLWCTESFT--------------VK-------------------STL-------EEHTQWITDVRFSPSLSRLATS  615 (768)
Q Consensus       576 Dg~I~VWdl~t~~--------------~~-------------------~tl-------~~h~~~V~sl~fspdg~~LaTg  615 (768)
                      |+.|++|+.....              ..                   ..+       ......+.+++|+|++++|++|
T Consensus        75 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g  154 (299)
T d1nr0a2          75 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVG  154 (299)
T ss_dssp             TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred             eeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8889998754210              00                   000       0123457889999999999999


Q ss_pred             eCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----cCCCeeEEEEe
Q 004207          616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQ  691 (768)
Q Consensus       616 s~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~----~~~~i~sl~fs  691 (768)
                      +.|+.|++||++++.........|...|++++|+|++. +|++++.|+.|++||+.++..+....    +...|.+++|+
T Consensus       155 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  233 (299)
T d1nr0a2         155 GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA-FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS  233 (299)
T ss_dssp             ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999877654445667899999999999976 56688999999999998776554332    24679999999


Q ss_pred             cCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEecc-CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          692 PRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       692 p~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~-H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |++.+|++++.|+.|++||+++.....              ...... +...|.++.| +++.+|++++.||.|+|||
T Consensus       234 ~~~~~l~sgs~dg~i~iwd~~~~~~~~--------------~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWd  296 (299)
T d1nr0a2         234 PDNVRLATGSLDNSVIVWNMNKPSDHP--------------IIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWN  296 (299)
T ss_dssp             TTSSEEEEEETTSCEEEEETTCTTSCC--------------EEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred             ccccceEEEcCCCEEEEEECCCCCcce--------------EEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEe
Confidence            999999999999999999988753211              112223 3455666665 5578999999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.1e-24  Score=229.35  Aligned_cols=204  Identities=16%  Similarity=0.202  Sum_probs=166.7

Q ss_pred             EEEecCC-CCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCe--------EEEEeccCCCCEEEEEEcCCCCEEEEEe
Q 004207          548 FQLIPAS-TSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSRLATSS  616 (768)
Q Consensus       548 ~~~l~~H-~~~I~sl~fSp--dg~~LaSgs~Dg~I~VWdl~t~~--------~~~tl~~h~~~V~sl~fspdg~~LaTgs  616 (768)
                      +..+.+| ...|++++|+|  ++.+|++|+.||+|+|||+..++        ....+..|.++|.+++|++++++|++++
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  134 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG  134 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence            4555677 46899999998  67899999999999999986532        2234567889999999999999998876


Q ss_pred             C--CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCeeEEEE
Q 004207          617 A--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRF  690 (768)
Q Consensus       617 ~--DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~----~~~i~sl~f  690 (768)
                      .  ++.+++|+++++.. +..+.+|...|.+++|+|++..++++++.|+.|++||++.++....+..    ...|.+++|
T Consensus       135 ~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~  213 (325)
T d1pgua1         135 EGRDNFGVFISWDSGNS-LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF  213 (325)
T ss_dssp             CCSSCSEEEEETTTCCE-EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE
T ss_pred             ccccceEEEEeeccccc-ceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeee
Confidence            5  67899999998765 7888899999999999999988888999999999999998877766543    455899999


Q ss_pred             ecC-CCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEe---CCCCEEEEEECCCcEEE
Q 004207          691 QPR-LGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAS---TVNGMVASASHDKCVKI  766 (768)
Q Consensus       691 sp~-~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~s---pdg~~LaSgs~DG~V~I  766 (768)
                      +|+ +.++++++.|+.|++||+++......                +.+|...|.++.|+   +++.+|++++.|+.|+|
T Consensus       214 ~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~----------------l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~i  277 (325)
T d1pgua1         214 SPDSGEFVITVGSDRKISCFDGKSGEFLKY----------------IEDDQEPVQGGIFALSWLDSQKFATVGADATIRV  277 (325)
T ss_dssp             CSTTCCEEEEEETTCCEEEEETTTCCEEEE----------------CCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEE
T ss_pred             ccccceeccccccccceeeeeecccccccc----------------ccccccccccceeeeeccCCCEEEEEeCCCeEEE
Confidence            997 56788899999999999988765432                33565555544444   67899999999999999


Q ss_pred             eC
Q 004207          767 WK  768 (768)
Q Consensus       767 WD  768 (768)
                      ||
T Consensus       278 wd  279 (325)
T d1pgua1         278 WD  279 (325)
T ss_dssp             EE
T ss_pred             EE
Confidence            96

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3e-24  Score=222.85  Aligned_cols=224  Identities=21%  Similarity=0.358  Sum_probs=172.6

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      .+++|++|+.|++|++|+....                   +.+..+.+|.+.|.+++|+++  +|++|+.|+.+++|+.
T Consensus        26 ~g~~l~sgs~Dg~i~vWd~~~~-------------------~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~   84 (342)
T d2ovrb2          26 CGNRIVSGSDDNTLKVWSAVTG-------------------KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNA   84 (342)
T ss_dssp             ETTEEEEEETTSCEEEEETTTC-------------------CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEET
T ss_pred             CCCEEEEEeCCCeEEEEECCCC-------------------CEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccc
Confidence            4678999999999999965432                   245677889999999999764  8888888888888875


Q ss_pred             CCCe----------------------------------------------------------------------------
Q 004207          585 ESFT----------------------------------------------------------------------------  588 (768)
Q Consensus       585 ~t~~----------------------------------------------------------------------------  588 (768)
                      ....                                                                            
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~  164 (342)
T d2ovrb2          85 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP  164 (342)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEG
T ss_pred             ccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeec
Confidence            4321                                                                            


Q ss_pred             ----EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc
Q 004207          589 ----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (768)
Q Consensus       589 ----~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~  664 (768)
                          .+..+.+|...+.+  +++++.+|++++.||+|++||++.++. +..+.+|...|.+++++++   +|++++.|+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~---~l~s~s~d~~  238 (342)
T d2ovrb2         165 ETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVETGNC-IHTLTGHQSLTSGMELKDN---ILVSGNADST  238 (342)
T ss_dssp             GGTEEEEEECCCSSCEEE--EEECSSEEEEEETTSCEEEEETTTCCE-EEEECCCCSCEEEEEEETT---EEEEEETTSC
T ss_pred             ccceeeEEEcCccccccc--ccCCCCEEEEEeCCCeEEEeeccccee-eeEecccccceeEEecCCC---EEEEEcCCCE
Confidence                12222334443433  344678999999999999999998775 7888899999999998864   7889999999


Q ss_pred             EEEEECCCCeeEEEEec----CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCC
Q 004207          665 IRYWSINNGSCAGVFKC----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD  740 (768)
Q Consensus       665 I~iWDl~sg~~i~~~~~----~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~  740 (768)
                      |++||+...+....+..    ...+.++.++  +.++++++.||.|++||+++++.+..+.           .....+|.
T Consensus       239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~-----------~~~~~~~~  305 (342)
T d2ovrb2         239 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLV-----------TLESGGSG  305 (342)
T ss_dssp             EEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-----------ECTTGGGT
T ss_pred             EEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEe-----------cccCCCCC
Confidence            99999999888877764    2334555554  5689999999999999999887654332           11123688


Q ss_pred             CCeeEEEEeCCCCEEEEEECCCc----EEEeC
Q 004207          741 KLVSSLAASTVNGMVASASHDKC----VKIWK  768 (768)
Q Consensus       741 ~~I~sla~spdg~~LaSgs~DG~----V~IWD  768 (768)
                      +.|++++|+|++.+|++|+.||+    |++||
T Consensus       306 ~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~D  337 (342)
T d2ovrb2         306 GVVWRIRASNTKLVCAVGSRNGTEETKLLVLD  337 (342)
T ss_dssp             CEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCCCeeEEEEEe
Confidence            89999999999999999999996    89997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-23  Score=213.57  Aligned_cols=234  Identities=21%  Similarity=0.390  Sum_probs=187.9

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl  584 (768)
                      .+++|++|+.|++|++|+....                   +.+..+.+|.+.|++|+|  ++++|++|+.|+.|++|++
T Consensus        24 d~~~l~sgs~Dg~i~vWd~~~~-------------------~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2          24 DDQKIVSGLRDNTIKIWDKNTL-------------------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             CSSEEEEEESSSCEEEEESSSC-------------------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred             cCCEEEEEeCCCeEEEEECCCC-------------------cEEEEEecCCCCEeeeec--ccceeeccccccccccccc
Confidence            4679999999999999965322                   356778899999999987  6789999999999999999


Q ss_pred             CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe--eEEEeecCCCCeEEEEEeCCCCeEEEEEeCC
Q 004207          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (768)
Q Consensus       585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~--~~~~~~~h~~~V~slafsp~g~~lLaSgs~D  662 (768)
                      ..+........+....  ..+.+....++++..++.+++||......  ....+..|...|.++.+.+.   .+++++.|
T Consensus        83 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~d  157 (293)
T d1p22a2          83 NTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGD  157 (293)
T ss_dssp             SSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT---EEEEEETT
T ss_pred             cccccccccccccccc--ccccccccceeecccccceeEeeccccccccccccccccccccccceeccc---ccccccCC
Confidence            9988887776555443  33445567899999999999999986543  34566778889998888754   56688889


Q ss_pred             CcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc--------------------
Q 004207          663 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------------------  721 (768)
Q Consensus       663 g~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~--------------------  721 (768)
                      +.|++||+++++++..+.. ...+..+.++  +.++++++.|+.|++||+++........                    
T Consensus       158 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~  235 (293)
T d1p22a2         158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA  235 (293)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEE
T ss_pred             CceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEc
Confidence            9999999999999888875 3446666665  4589999999999999998876554332                    


Q ss_pred             ---eeEEeecCCC----------ceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 ---TLELWNMTEN----------KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 ---~I~iwd~~~~----------~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                         .|++||+...          ....+.+|.+.|++|+|+  +.+|+|||.||+|+|||
T Consensus       236 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             CCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence               7889986432          234677999999999995  67899999999999998

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1e-24  Score=225.59  Aligned_cols=222  Identities=9%  Similarity=0.003  Sum_probs=163.7

Q ss_pred             eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE---EEeccCCCCEEEEEEcCC-CCEEEEEeCCCcE
Q 004207          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK---STLEEHTQWITDVRFSPS-LSRLATSSADRTV  621 (768)
Q Consensus       546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~---~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtI  621 (768)
                      +.+....+|++.|++|+|+|++++||+|+.||+|+|||+.+....   ....+|..+|++++|+|+ +.+|++|+.|++|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            346677899999999999999999999999999999998765432   233469999999999986 5589999999999


Q ss_pred             EEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----c---CCCeeEEEEecCC
Q 004207          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----C---QSGATQMRFQPRL  694 (768)
Q Consensus       622 rVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~----~---~~~i~sl~fsp~~  694 (768)
                      ++|++............+........+.++ ...+++++.|+.+++||++.+.......    .   ......+.+.+.+
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eeeecccccccccccccccccccccccccc-cccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            999998876633333333333444445555 4467789999999999987543332221    1   2234566778888


Q ss_pred             CEEEEEEcCCeEEEEECCCceEeeec-----------------------------ceeEEeecCCCceE-----------
Q 004207          695 GRILAAAIENYISILDVETQVCRLKL-----------------------------QTLELWNMTENKTL-----------  734 (768)
Q Consensus       695 ~~llags~Dg~I~IwD~~t~~~~~~~-----------------------------~~I~iwd~~~~~~~-----------  734 (768)
                      ..+++++.|+.|++||+.........                             ..+.+|+.......           
T Consensus       161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~  240 (342)
T d1yfqa_         161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence            89999999999999998764321110                             04556654332111           


Q ss_pred             -----EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          735 -----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       735 -----~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                           ....|...|++|+|+|++.+||||+.||.|+|||
T Consensus       241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD  279 (342)
T d1yfqa_         241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEE
Confidence                 1235667899999999999999999999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=1.5e-23  Score=221.26  Aligned_cols=237  Identities=8%  Similarity=-0.005  Sum_probs=189.6

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCC--cEEEE
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK--KAVLW  582 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg--~I~VW  582 (768)
                      .+.+++.++ ++.|.+|....+                .    +..+ +|...|.+++|+|||++|++++.+.  .|++|
T Consensus        14 dG~~~a~~~-~g~v~v~d~~~~----------------~----~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~   71 (360)
T d1k32a3          14 DGDLIAFVS-RGQAFIQDVSGT----------------Y----VLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIY   71 (360)
T ss_dssp             GGGCEEEEE-TTEEEEECTTSS----------------B----EEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEE
T ss_pred             CCCEEEEEE-CCeEEEEECCCC----------------c----EEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEE
Confidence            455677765 478888844221                1    1122 6899999999999999998776554  79999


Q ss_pred             ECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEE---
Q 004207          583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---  659 (768)
Q Consensus       583 dl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSg---  659 (768)
                      |+++++.. .+..|...|.+++|+|++++|++++.++.+++|++.++.. ...+..|...+.+++|+|+|..++++.   
T Consensus        72 d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~la~~~~~~  149 (360)
T d1k32a3          72 DYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNSRFIAYGFPLK  149 (360)
T ss_dssp             ETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTSCEEEEEEEEC
T ss_pred             ECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccce-eeeeecccccccchhhccceeeeeeecccc
Confidence            99887665 5678999999999999999999999999999999998775 677788889999999999998776543   


Q ss_pred             ------eCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee---------cc---
Q 004207          660 ------DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK---------LQ---  721 (768)
Q Consensus       660 ------s~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~---------~~---  721 (768)
                            ..++.+++||+.+++..........+..++|+|++.+|++++.++.+.+||.........         +.   
T Consensus       150 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  229 (360)
T d1k32a3         150 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS  229 (360)
T ss_dssp             SSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTC
T ss_pred             ccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCc
Confidence                  234569999999988877777777888999999999999999999999998654321100         00   


Q ss_pred             ---------------------------------------------------------------------eeEEeecCCCc
Q 004207          722 ---------------------------------------------------------------------TLELWNMTENK  732 (768)
Q Consensus       722 ---------------------------------------------------------------------~I~iwd~~~~~  732 (768)
                                                                                           .+++||+.+++
T Consensus       230 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  309 (360)
T d1k32a3         230 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK  309 (360)
T ss_dssp             CCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC
T ss_pred             cccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe
Confidence                                                                                 67788887776


Q ss_pred             eEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          733 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       733 ~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ...+.   +.|.+++|+|||++|++++.||.|++||
T Consensus       310 ~~~~~---~~v~~~~~SpDG~~l~~~~~Dg~i~v~d  342 (360)
T d1k32a3         310 VTEVK---NNLTDLRLSADRKTVMVRKDDGKIYTFP  342 (360)
T ss_dssp             EEEEE---EEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             EEEec---CCcCEEEECCCCCEEEEEECCCeEEEEE
Confidence            65443   4589999999999999999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.6e-23  Score=216.88  Aligned_cols=215  Identities=18%  Similarity=0.296  Sum_probs=163.5

Q ss_pred             EEEecCCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207          548 FQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (768)
Q Consensus       548 ~~~l~~H~~~I-~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl  626 (768)
                      ..++++|.+.| +|++|  ++++||||+.||+|+|||+.+++++.++.+|.+.|++|+|+|+ .+|++|+.|++|++|++
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~   81 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI   81 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence            56788998876 66655  6889999999999999999999999999999999999999986 58999999999999999


Q ss_pred             CCCCeeEEEeec-CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----------------------CC
Q 004207          627 ENPDYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----------------------QS  683 (768)
Q Consensus       627 ~t~~~~~~~~~~-h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~----------------------~~  683 (768)
                      ............ +...+..+.+.+++. .+++++.|+.|++||++....+.....                      ..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d1nexb2          82 KKGCCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  160 (355)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEEETTEE-EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred             cccccccccccccccccccccccccccc-eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence            986653322222 223344556677654 677899999999999987654332211                      01


Q ss_pred             CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-------------------------eeEEeecCCCceE-Eec
Q 004207          684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-------------------------TLELWNMTENKTL-TLS  737 (768)
Q Consensus       684 ~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-------------------------~I~iwd~~~~~~~-~l~  737 (768)
                      ......+.+++..++++..|+.|++||+.+........                         .+++||..++... .+.
T Consensus       161 ~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  240 (355)
T d1nexb2         161 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ  240 (355)
T ss_dssp             SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             cccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccc
Confidence            11223456677889999999999999998876543322                         6889998887665 677


Q ss_pred             cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          738 AHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       738 ~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +|...|++++|+  +++|++++.||.|++||
T Consensus       241 ~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd  269 (355)
T d1nexb2         241 GHTALVGLLRLS--DKFLVSAAADGSIRGWD  269 (355)
T ss_dssp             CCSSCCCEEEEC--SSEEEEECTTSEEEEEE
T ss_pred             cccccccccccc--cceeeeeeccccccccc
Confidence            899999999987  56999999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.7e-22  Score=210.48  Aligned_cols=235  Identities=19%  Similarity=0.219  Sum_probs=187.2

Q ss_pred             cccCCCCCceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCcccccc--------
Q 004207          474 LQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSA--------  537 (768)
Q Consensus       474 l~~s~s~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~--------  537 (768)
                      +..+++.+..+.+|.....        +...+....+.+.+.++++|+.|+.+++|................        
T Consensus        69 ~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (340)
T d1tbga_          69 LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC  148 (340)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEE
T ss_pred             EEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccc
Confidence            4566778888999987643        233345666788899999999999999996544322111100000        


Q ss_pred             -c-----------------cCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCC
Q 004207          538 -E-----------------VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW  599 (768)
Q Consensus       538 -~-----------------~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~  599 (768)
                       .                 ...............+...|.++.+.+.+.++++++.|+.|++||+.+++++.++.+|...
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~  228 (340)
T d1tbga_         149 CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD  228 (340)
T ss_dssp             EEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSC
T ss_pred             cccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCC
Confidence             0                 0000112234445667788999999999999999999999999999999999999999999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEE--eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE
Q 004207          600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT--FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG  677 (768)
Q Consensus       600 V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~--~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~  677 (768)
                      |++++|+|++.+|++|+.|++|++||++.... +..  ...+...|.+++|+|++. +|++|+.||.|++||+.+++++.
T Consensus       229 i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~~~~  306 (340)
T d1tbga_         229 INAICFFPNGNAFATGSDDATCRLFDLRADQE-LMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAG  306 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEEEEEECSSSC-EEEEEETTSCEEEEETTTCCEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeeccccc-ccccccccccCceEEEEECCCCC-EEEEEECCCEEEEEECCCCcEEE
Confidence            99999999999999999999999999997664 333  345667899999999977 66689999999999999999999


Q ss_pred             EEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 004207          678 VFKC-QSGATQMRFQPRLGRILAAAIENYISILD  710 (768)
Q Consensus       678 ~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD  710 (768)
                      .+.. ...|.+++|+|++.+|++++.|+.|+|||
T Consensus       307 ~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9985 56799999999999999999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.5e-23  Score=226.41  Aligned_cols=246  Identities=15%  Similarity=0.127  Sum_probs=171.4

Q ss_pred             CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEE------cC-CCCEEEEEeCCC
Q 004207          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF------SP-DGKLLATGGHDK  577 (768)
Q Consensus       505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~f------Sp-dg~~LaSgs~Dg  577 (768)
                      .+++++++|.|++|++|........             ...........|...+..+.+      +. ++.++++++.||
T Consensus        23 ~~~~l~S~S~D~~iriWd~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg   89 (393)
T d1sq9a_          23 CNSFTVSCSGDGYLKVWDNKLLDNE-------------NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG   89 (393)
T ss_dssp             CSSEEEEEETTSEEEEEESBCCTTC-------------CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred             eCCEEEEEECCCeEEEEECCCCCCC-------------cccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCC
Confidence            3578999999999999964332211             001111222334443332222      21 234688999999


Q ss_pred             cEEEEECCCCeE----E-EEe-----ccCCCCEEEEEEcCC-----CCEEEEEeCCCcEEEEECCCCCe-----------
Q 004207          578 KAVLWCTESFTV----K-STL-----EEHTQWITDVRFSPS-----LSRLATSSADRTVRVWDTENPDY-----------  631 (768)
Q Consensus       578 ~I~VWdl~t~~~----~-~tl-----~~h~~~V~sl~fspd-----g~~LaTgs~DgtIrVWDl~t~~~-----------  631 (768)
                      .|++|++.....    . ...     ..+...+..++|.++     +.++++++.||+|++||+.....           
T Consensus        90 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  169 (393)
T d1sq9a_          90 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP  169 (393)
T ss_dssp             CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred             cEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeecc
Confidence            999998653221    1 111     224456788888775     46899999999999999853210           


Q ss_pred             ------eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-------CCCeeEEEEecCCCEEE
Q 004207          632 ------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRIL  698 (768)
Q Consensus       632 ------~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-------~~~i~sl~fsp~~~~ll  698 (768)
                            .......+...+.+++|+|++  +|++|+.|++|++||+++++++..+..       ...|.+++|+|++.+|+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~  247 (393)
T d1sq9a_         170 TLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA  247 (393)
T ss_dssp             EEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEE
T ss_pred             ceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceee
Confidence                  011122355678999999986  778999999999999999998877653       45799999999999999


Q ss_pred             EEEcCC---eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          699 AAAIEN---YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       699 ags~Dg---~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +++.|+   .|++||+.++.+...+.   ...........+.+|.+.|++|+|+|++++|+|||.|++|+|||
T Consensus       248 sgs~D~t~~~i~lwd~~~g~~~~~l~---~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         248 IAHDSNSFGCITLYETEFGERIGSLS---VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  317 (393)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEEC---BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             eecCCCCcceeeecccccceeeeeec---cccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence            999887   48999999987655432   11111222334568999999999999999999999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.4e-22  Score=220.36  Aligned_cols=246  Identities=13%  Similarity=0.167  Sum_probs=174.3

Q ss_pred             CEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC-----CCEEEEEeCCCcEEE
Q 004207          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-----GKLLATGGHDKKAVL  581 (768)
Q Consensus       507 ~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd-----g~~LaSgs~Dg~I~V  581 (768)
                      .++++++.|+.|++|................         .......+...+.+++|.++     +.++++++.||+|++
T Consensus        80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~v  150 (393)
T d1sq9a_          80 CLVATTSFSGDLLFYRITREDETKKVIFEKL---------DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI  150 (393)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEE---------CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred             cEEEEEeCCCcEEEEEccCCCceeeeecccc---------ceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEE
Confidence            4678999999999996543322111111000         01111234566788888775     457999999999999


Q ss_pred             EECCCCe---------------E---EEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE-----EEeec
Q 004207          582 WCTESFT---------------V---KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-----RTFTG  638 (768)
Q Consensus       582 Wdl~t~~---------------~---~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~-----~~~~~  638 (768)
                      |++....               .   ......+...+.+++|+|++ +|++|+.|++|+|||+.+++...     ..+.+
T Consensus       151 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~  229 (393)
T d1sq9a_         151 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMIN  229 (393)
T ss_dssp             EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---C
T ss_pred             EEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccccccc
Confidence            9974210               1   11123455678999999997 89999999999999999876422     24467


Q ss_pred             CCCCeEEEEEeCCCCeEEEEEeCCC---cEEEEECCCCeeEEEEe--------------cCCCeeEEEEecCCCEEEEEE
Q 004207          639 HSTTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNGSCAGVFK--------------CQSGATQMRFQPRLGRILAAA  701 (768)
Q Consensus       639 h~~~V~slafsp~g~~lLaSgs~Dg---~I~iWDl~sg~~i~~~~--------------~~~~i~sl~fsp~~~~llags  701 (768)
                      |...|.+|+|+|++. +|++|+.|+   .|++||+++++++..+.              |...|++++|+|++.+|++++
T Consensus       230 h~~~V~~l~~spdg~-~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s  308 (393)
T d1sq9a_         230 NSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG  308 (393)
T ss_dssp             CCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred             ccceEEEcccccccc-eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC
Confidence            899999999999987 566888776   49999999999888774              345699999999999999999


Q ss_pred             cCCeEEEEECCCceEeeecc----eeE------EeecCCCceEEeccCCCCeeEEEEeCCC----------CEEEEEECC
Q 004207          702 IENYISILDVETQVCRLKLQ----TLE------LWNMTENKTLTLSAHDKLVSSLAASTVN----------GMVASASHD  761 (768)
Q Consensus       702 ~Dg~I~IwD~~t~~~~~~~~----~I~------iwd~~~~~~~~l~~H~~~I~sla~spdg----------~~LaSgs~D  761 (768)
                      .|++|++||++++.++..+.    .|.      .++.. +.   . .....+.++.|.+.+          ..|++++.|
T Consensus       309 ~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~-~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  383 (393)
T d1sq9a_         309 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH-GD---S-LAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD  383 (393)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTT-SC---B-CSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT
T ss_pred             CCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCC-CC---E-EEEcccceEEECccCceeccccCCCCEEEEEEcC
Confidence            99999999999998765543    010      00000 00   0 123457788887643          469999999


Q ss_pred             CcEEEeC
Q 004207          762 KCVKIWK  768 (768)
Q Consensus       762 G~V~IWD  768 (768)
                      +.|++|+
T Consensus       384 ~~ir~~~  390 (393)
T d1sq9a_         384 RSIRWFR  390 (393)
T ss_dssp             TEEEEEE
T ss_pred             CeEEEEe
Confidence            9999984

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.6e-22  Score=208.52  Aligned_cols=212  Identities=17%  Similarity=0.294  Sum_probs=161.4

Q ss_pred             eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      +.++++.+|.++|+|++|+|    |+||+.||+|++||+.++     ..+|...|.+++|+++ ..+++++.|++|++|+
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~   73 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNG   73 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEETT
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeecccccccc
Confidence            56788999999999999987    999999999999998753     3579999999999876 4678999999999998


Q ss_pred             CCCCCe----------------------eEEEeecCC--------CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee
Q 004207          626 TENPDY----------------------SLRTFTGHS--------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  675 (768)
Q Consensus       626 l~t~~~----------------------~~~~~~~h~--------~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~  675 (768)
                      +...+.                      .+..+....        ......++++++..+++++..++.|++|++.....
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~  153 (287)
T d1pgua2          74 ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV  153 (287)
T ss_dssp             EEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE
T ss_pred             ccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccce
Confidence            653110                      000111111        11223455667676665565566899999987666


Q ss_pred             EEEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeec---------------------------------
Q 004207          676 AGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---------------------------------  720 (768)
Q Consensus       676 i~~~~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~---------------------------------  720 (768)
                      ...+..  ...+.+++|+|++.+|++++.|+.|++||+.+.......                                 
T Consensus       154 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sg  233 (287)
T d1pgua2         154 SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG  233 (287)
T ss_dssp             EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEE
T ss_pred             eeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEee
Confidence            555543  467999999999999999999999999999876432210                                 


Q ss_pred             ---ceeEEeecCC-CceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          721 ---QTLELWNMTE-NKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       721 ---~~I~iwd~~~-~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                         ..|++||+.. .+.+ .+.+|...|++++|+|++ .|++++.||+|+|||
T Consensus       234 s~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         234 SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN  285 (287)
T ss_dssp             ETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred             cCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEE
Confidence               1688999866 3333 456899999999999975 689999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.1e-21  Score=201.05  Aligned_cols=213  Identities=24%  Similarity=0.468  Sum_probs=161.7

Q ss_pred             eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      +..+.+++|.+.|.+ +++++|++||||+.||+|+|||+.+++++.++.+|...|.+++|+++  +|++|+.|+++++|+
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWN   83 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEE
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccc
Confidence            456778999999865 36668999999999999999999999999999999999999999975  999999999999999


Q ss_pred             CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCe
Q 004207          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY  705 (768)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~  705 (768)
                      ...... ......+...+....+.+.   .++.+..|+.|.+|+..++.....+........ .+.+....+++++.|+.
T Consensus        84 ~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~  158 (342)
T d2ovrb2          84 AETGEC-IHTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR-CVQYDGRRVVSGAYDFM  158 (342)
T ss_dssp             TTTTEE-EEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEESSSCCEEEEEECCSSCEE-EEEECSSCEEEEETTSC
T ss_pred             cccccc-eecccccceeEeeeecccc---cccccccceeEEEeecccccceeeeecccccce-eeccccceeeeecCCCe
Confidence            987554 4444445555655555432   455667788888888887777666654333332 33344466777777888


Q ss_pred             EEEEECCCceEeeecc-----------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207          706 ISILDVETQVCRLKLQ-----------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD  761 (768)
Q Consensus       706 I~IwD~~t~~~~~~~~-----------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~D  761 (768)
                      |++||.........+.                       .|++||+..+..+ .+.+|...|.+++++  +++|++++.|
T Consensus       159 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d  236 (342)
T d2ovrb2         159 VKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNAD  236 (342)
T ss_dssp             EEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETT
T ss_pred             EEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCC
Confidence            8888776655433221                       6777887776654 566899999998887  4699999999


Q ss_pred             CcEEEeC
Q 004207          762 KCVKIWK  768 (768)
Q Consensus       762 G~V~IWD  768 (768)
                      |.|+|||
T Consensus       237 ~~i~iwd  243 (342)
T d2ovrb2         237 STVKIWD  243 (342)
T ss_dssp             SCEEEEE
T ss_pred             CEEEEEe
Confidence            9999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.5e-21  Score=195.89  Aligned_cols=212  Identities=21%  Similarity=0.398  Sum_probs=164.6

Q ss_pred             eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (768)
Q Consensus       545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVW  624 (768)
                      +..+.....|...|+|++|  |+++||||+.||+|+|||+.+++++.++.+|...|++|+|  ++++|++|+.|++|++|
T Consensus         5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~   80 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW   80 (293)
T ss_dssp             CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred             EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccc
Confidence            3456777889999999765  7999999999999999999999999999999999999988  46799999999999999


Q ss_pred             ECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEE---e-cCCCeeEEEEecCCCEEEEE
Q 004207          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---K-CQSGATQMRFQPRLGRILAA  700 (768)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~---~-~~~~i~sl~fsp~~~~llag  700 (768)
                      ++..+.. ......+....  ..+.+... .++++..++.+.+||+.........   . +...+..+.+.+  ..++++
T Consensus        81 ~~~~~~~-~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~  154 (293)
T d1p22a2          81 DVNTGEM-LNTLIHHCEAV--LHLRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSA  154 (293)
T ss_dssp             ESSSCCE-EEEECCCCSCE--EEEECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEE
T ss_pred             ccccccc-ccccccccccc--cccccccc-ceeecccccceeEeeccccccccccccccccccccccceecc--cccccc
Confidence            9998775 33333333333  33334434 5668888999999999876543322   2 234455556554  578899


Q ss_pred             EcCCeEEEEECCCceEeeecc-----------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEE
Q 004207          701 AIENYISILDVETQVCRLKLQ-----------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA  756 (768)
Q Consensus       701 s~Dg~I~IwD~~t~~~~~~~~-----------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~La  756 (768)
                      +.|+.|++||+++......+.                       .|++||+.+...+ ...+|...|..  +++++.+|+
T Consensus       155 s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~  232 (293)
T d1p22a2         155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIV  232 (293)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEE
T ss_pred             cCCCceeeecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEE
Confidence            999999999999876654432                       7899999887766 45567777765  456688999


Q ss_pred             EEECCCcEEEeC
Q 004207          757 SASHDKCVKIWK  768 (768)
Q Consensus       757 Sgs~DG~V~IWD  768 (768)
                      +++.||.|+|||
T Consensus       233 sg~~dg~i~iwd  244 (293)
T d1p22a2         233 SGAYDGKIKVWD  244 (293)
T ss_dssp             EEETTSCEEEEE
T ss_pred             EEcCCCEEEEEE
Confidence            999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=3.6e-21  Score=198.50  Aligned_cols=233  Identities=11%  Similarity=0.064  Sum_probs=159.1

Q ss_pred             cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEE
Q 004207          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVL  581 (768)
Q Consensus       503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~V  581 (768)
                      .+.+++|++||.|++|++|......                ....+....+|.++|+|++|++++ .+|++|+.|+.|++
T Consensus        20 sp~~~~L~s~s~Dg~v~iwd~~~~~----------------~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~   83 (342)
T d1yfqa_          20 IPSKSLLLITSWDGSLTVYKFDIQA----------------KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EGGGTEEEEEETTSEEEEEEEETTT----------------TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             eCCCCEEEEEECCCeEEEEEccCCC----------------cceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee
Confidence            3346799999999999999653321                112233444799999999999864 58999999999999


Q ss_pred             EECCCCeEEEEeccCCCC-------------------------------------------------EEEEEEcCCCCEE
Q 004207          582 WCTESFTVKSTLEEHTQW-------------------------------------------------ITDVRFSPSLSRL  612 (768)
Q Consensus       582 Wdl~t~~~~~tl~~h~~~-------------------------------------------------V~sl~fspdg~~L  612 (768)
                      |++...........+...                                                 ...+.+.+.+..+
T Consensus        84 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (342)
T d1yfqa_          84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL  163 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred             eecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence            998765444333222111                                                 1122334445566


Q ss_pred             EEEeCCCcEEEEECCCCCee--EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeE------EEEe----
Q 004207          613 ATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA------GVFK----  680 (768)
Q Consensus       613 aTgs~DgtIrVWDl~t~~~~--~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i------~~~~----  680 (768)
                      ++++.|+.|++||+......  ......+...+.++.+.+.....+++++.||.+.+|++......      ..+.    
T Consensus       164 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~  243 (342)
T d1yfqa_         164 IVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL  243 (342)
T ss_dssp             EEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred             eeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeee
Confidence            66666666666666544321  22333445567777777766678889999999999998643211      1111    


Q ss_pred             ------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCE
Q 004207          681 ------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGM  754 (768)
Q Consensus       681 ------~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~  754 (768)
                            +...+.+++|+|++.+|++|+.||.|++||+++.+.+..+                 .+...+..++|+|++++
T Consensus       244 ~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~-----------------~~~~~~~~~~~s~~~~~  306 (342)
T d1yfqa_         244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF-----------------AKFNEDSVVKIACSDNI  306 (342)
T ss_dssp             CTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC-----------------CCCSSSEEEEEEECSSE
T ss_pred             ccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEe-----------------cCCCCCEEEEEEeCCCE
Confidence                  1235789999999999999999999999999887654322                 12234566788888999


Q ss_pred             EEEEECCCcEEEeC
Q 004207          755 VASASHDKCVKIWK  768 (768)
Q Consensus       755 LaSgs~DG~V~IWD  768 (768)
                      |++++.|+++++|.
T Consensus       307 l~~a~sdd~~~~~~  320 (342)
T d1yfqa_         307 LCLATSDDTFKTNA  320 (342)
T ss_dssp             EEEEEECTHHHHCS
T ss_pred             EEEEEcCCcEEEee
Confidence            99999998877763

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=7.4e-19  Score=180.18  Aligned_cols=236  Identities=17%  Similarity=0.178  Sum_probs=186.7

Q ss_pred             EeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCe
Q 004207          510 DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFT  588 (768)
Q Consensus       510 atGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~La-Sgs~Dg~I~VWdl~t~~  588 (768)
                      ++++.|++|.+|+....                   +.+..+... ..+..++|+|||++|+ +++.++.|++||+.+++
T Consensus         6 V~~~~~~~v~v~D~~t~-------------------~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~   65 (301)
T d1l0qa2           6 IANSESDNISVIDVTSN-------------------KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN   65 (301)
T ss_dssp             EEETTTTEEEEEETTTT-------------------EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred             EEECCCCEEEEEECCCC-------------------eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence            46778999999954322                   223333332 4478999999999874 66678999999999999


Q ss_pred             EEEEeccCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEE
Q 004207          589 VKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY  667 (768)
Q Consensus       589 ~~~tl~~h~~~V~sl~fspdg~~La-Tgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~i  667 (768)
                      .+.++..+. .+..++|++++.+++ ++..++.+++|+..+++. ...+. +...+.+++|+|++..+++++..++.+.+
T Consensus        66 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~  142 (301)
T d1l0qa2          66 VIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSV  142 (301)
T ss_dssp             EEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eeeeeeccc-cccccccccccccccccccccceeeeccccccee-eeecc-ccccceEEEeecCCCeeeeeeccccceee
Confidence            999998775 478999999988655 455677999999988664 55555 44578899999999999989999999999


Q ss_pred             EECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcC-CeEEEEECCCceEeeecc-------------------------
Q 004207          668 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-NYISILDVETQVCRLKLQ-------------------------  721 (768)
Q Consensus       668 WDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~D-g~I~IwD~~t~~~~~~~~-------------------------  721 (768)
                      |+..+...+..+.....+..+.++|++..+++++.+ +.+.+|+...........                         
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~  222 (301)
T d1l0qa2         143 INTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKY  222 (301)
T ss_dssp             EETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSS
T ss_pred             eeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccce
Confidence            999999999999988889999999999998888765 566777776554332221                         


Q ss_pred             --eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEE-EEEECCCcEEEeC
Q 004207          722 --TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK  768 (768)
Q Consensus       722 --~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~L-aSgs~DG~V~IWD  768 (768)
                        .|.+||..+++......+...+.+++|+|+|++| ++++.|+.|+|||
T Consensus       223 ~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D  272 (301)
T d1l0qa2         223 FNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVID  272 (301)
T ss_dssp             CCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence              5889999988877655556678999999999976 5677899999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.83  E-value=7.1e-20  Score=192.58  Aligned_cols=197  Identities=13%  Similarity=0.061  Sum_probs=159.8

Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCeeEEE
Q 004207          559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRT  635 (768)
Q Consensus       559 ~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg--tIrVWDl~t~~~~~~~  635 (768)
                      ..-.||| ||++||+++ +|.|+|||++++..+..  .|...|.+++|+|||++|++++.+.  .|++||++++.  ...
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~--~~~   80 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK--AEK   80 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC--EEE
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc--EEE
Confidence            3467999 999999986 47999999998877653  6899999999999999998877654  79999999865  456


Q ss_pred             eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004207          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ  714 (768)
Q Consensus       636 ~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~  714 (768)
                      +..|...|.+++|+|+++ .|++++.++.+++|++.++.+...+.. ...+.+++|+|++.+|+++..+....++     
T Consensus        81 ~~~~~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~-----  154 (360)
T d1k32a3          81 FEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETD-----  154 (360)
T ss_dssp             CCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTC-----
T ss_pred             eeCCCceEEeeeeccccc-ccceeccccccccccccccceeeeeecccccccchhhccceeeeeeecccccccee-----
Confidence            778999999999999987 555888899999999999998888775 4567889999999998877654422111     


Q ss_pred             eEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          715 VCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       715 ~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                        ......+++|+...++...+..|...+..++|+|+|++|++++.|+.+++||
T Consensus       155 --~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d  206 (360)
T d1k32a3         155 --GYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD  206 (360)
T ss_dssp             --SCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             --eccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEccc
Confidence              1111245677777777777777888899999999999999999999999986

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=4.2e-19  Score=196.76  Aligned_cols=192  Identities=10%  Similarity=-0.019  Sum_probs=148.8

Q ss_pred             CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (768)
Q Consensus       506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~  585 (768)
                      ..++++.+.|+.|.+|+....                   +.+..+..|. .+..++|||||++|++++.|+.|++||+.
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~-------------------~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~   91 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTY-------------------EIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLW   91 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTC-------------------CEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             cEEEEEEcCCCEEEEEECCCC-------------------cEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEee
Confidence            345689999999999954322                   3455566664 59999999999999999999999999998


Q ss_pred             CCeE--EEEe---ccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCeeEEEeec-----------CCCCeEEEEE
Q 004207          586 SFTV--KSTL---EEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTG-----------HSTTVMSLDF  648 (768)
Q Consensus       586 t~~~--~~tl---~~h~~~V~sl~fspdg~~L-aTgs~DgtIrVWDl~t~~~~~~~~~~-----------h~~~V~slaf  648 (768)
                      +++.  +..+   .+|.+.+.++.|+|||++| ++++.+++|+|||..+++. +..+..           +......+.+
T Consensus        92 t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~  170 (432)
T d1qksa2          92 MKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILA  170 (432)
T ss_dssp             SSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred             CCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccc-eeeeccCCccccceeccCCCceeEEEE
Confidence            8763  3333   3455666777788999976 6788899999999998775 444332           3456778899


Q ss_pred             eCCCCeEEEEEeCCCcEEEEECCCCeeEE--EEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCceEee
Q 004207          649 HPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRL  718 (768)
Q Consensus       649 sp~g~~lLaSgs~Dg~I~iWDl~sg~~i~--~~~~~~~i~sl~fsp~~~~llags~-Dg~I~IwD~~t~~~~~  718 (768)
                      ++++..++++...++.|.+||..+.+...  .+.....+..+.|+|++.++++++. ++.|.++|..+.....
T Consensus       171 s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~  243 (432)
T d1qksa2         171 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA  243 (432)
T ss_dssp             CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             CCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEE
Confidence            99999888899999999999998876544  4455667889999999998888775 5678888887765543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=1.3e-19  Score=186.33  Aligned_cols=229  Identities=12%  Similarity=0.137  Sum_probs=161.8

Q ss_pred             ccCCCCCceEEEEecCCC---CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCc------------------c
Q 004207          475 QHNGASSKSLLMFGSDGM---GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDR------------------V  533 (768)
Q Consensus       475 ~~s~s~~~~~l~~~~~~~---~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~------------------~  533 (768)
                      ..+++.+..+.+|.....   +...+....+. .+..+++++.|+++++|...........                  .
T Consensus        24 l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~-~~~~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (287)
T d1pgua2          24 LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS-KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDD  102 (287)
T ss_dssp             TEEEETTSCEEETTTTEEECCCCSCEEEEECC-STTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSE
T ss_pred             EEEEeCCCeEEEEECCCCCCCCCCCEEEEEec-CCCeEEEEeeccccccccccccccccceeeeeeccCCceEEEeeccc
Confidence            456777888888876532   22222233333 3456788999999999954321111000                  0


Q ss_pred             ccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeEEEEec-cCCCCEEEEEEcCCCCE
Q 004207          534 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSR  611 (768)
Q Consensus       534 ~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg-~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~~  611 (768)
                      ...+....+.   .+..+.. ...  +.++++++..+++++.|+ .|++|++...+....+. .|...|++++|+|++.+
T Consensus       103 ~~~~~~~~~~---~~~~~~~-~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  176 (287)
T d1pgua2         103 LLILQSFTGD---IIKSVRL-NSP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY  176 (287)
T ss_dssp             EEEEETTTCC---EEEEEEC-SSC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSE
T ss_pred             ceeeecccee---eeeeccc-cce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccc
Confidence            0111111111   1222222 223  345667888888888775 69999998766665554 47788999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC---------CeEEEEEeCCCcEEEEECCC-CeeEEEEe-
Q 004207          612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK---------EDLLCSCDNNSEIRYWSINN-GSCAGVFK-  680 (768)
Q Consensus       612 LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g---------~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~-  680 (768)
                      |++|+.||.|++||+.++......+.+|...|.+++|+|.+         ..+|++|+.|+.|++||+++ .+.+..+. 
T Consensus       177 l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~  256 (287)
T d1pgua2         177 IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA  256 (287)
T ss_dssp             EEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS
T ss_pred             cccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCC
Confidence            99999999999999998776556678899999999999854         34788999999999999977 45555554 


Q ss_pred             cCCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 004207          681 CQSGATQMRFQPRLGRILAAAIENYISILDV  711 (768)
Q Consensus       681 ~~~~i~sl~fsp~~~~llags~Dg~I~IwD~  711 (768)
                      +...|.+++|+|+ +.|++++.|+.|++||+
T Consensus       257 h~~~V~~v~~~~~-~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         257 HKDGVNNLLWETP-STLVSSGADACIKRWNV  286 (287)
T ss_dssp             STTCEEEEEEEET-TEEEEEETTSCEEEEEE
T ss_pred             CCCCeEEEEECCC-CEEEEEECCCeEEEEEE
Confidence            3567999999997 57999999999999985

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=1.3e-18  Score=180.77  Aligned_cols=198  Identities=12%  Similarity=0.080  Sum_probs=161.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccC--CCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCeeEEEeecCC----
Q 004207          568 KLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHS----  640 (768)
Q Consensus       568 ~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h--~~~V~sl~fspdg~~La-Tgs~DgtIrVWDl~t~~~~~~~~~~h~----  640 (768)
                      +||++++.|++|.|||+++++++.++..+  ...+.+++|+|||++|+ +++.++.|++||+.+++. +..+..+.    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~-~~~~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecCCCccc
Confidence            58999999999999999999999888653  45678999999999874 667899999999999875 45544432    


Q ss_pred             -CCeEEEEEeCCCCeEEEEEe-----------CCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207          641 -TTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI  708 (768)
Q Consensus       641 -~~V~slafsp~g~~lLaSgs-----------~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~I  708 (768)
                       ..+..++|+|+++.+++++.           .+..+.+||..+++....+.....+..++|+|++.++++++.  .+.+
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~  158 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHV  158 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--Ccce
Confidence             34567899999987776543           467899999999999999998888999999999999888754  4567


Q ss_pred             EECCCceEeeecc-------------------------------------------------------------------
Q 004207          709 LDVETQVCRLKLQ-------------------------------------------------------------------  721 (768)
Q Consensus       709 wD~~t~~~~~~~~-------------------------------------------------------------------  721 (768)
                      ||..+........                                                                   
T Consensus       159 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (337)
T d1pbyb_         159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             eeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC
Confidence            7776654332211                                                                   


Q ss_pred             ----------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          722 ----------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       722 ----------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                            .+.+||+.+++.+....+...+.+++|+|+|++|++++.||.|+|||
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D  307 (337)
T d1pbyb_         239 MDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             CCcceEEEEecccceEEEEccccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence                                  67789999888887667778899999999999999999999999997

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.80  E-value=2.4e-18  Score=189.20  Aligned_cols=244  Identities=9%  Similarity=0.025  Sum_probs=175.7

Q ss_pred             CCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (768)
Q Consensus       504 ~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWd  583 (768)
                      ....++++.+.|+.|++|+....                   +.+..+..|. .+..++|||||++|++++.|++|++||
T Consensus        30 ~~~~~~V~~~~dg~v~vwD~~t~-------------------~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd   89 (426)
T d1hzua2          30 LPNLFSVTLRDAGQIALVDGDSK-------------------KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMID   89 (426)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTC-------------------SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             CCeEEEEEEcCCCEEEEEECCCC-------------------cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEE
Confidence            34556788999999999954322                   3456666664 599999999999999999999999999


Q ss_pred             CCCCeEEEE--e---ccCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCCeeEEEeecCCC-----------CeEEE
Q 004207          584 TESFTVKST--L---EEHTQWITDVRFSPSLSRLAT-SSADRTVRVWDTENPDYSLRTFTGHST-----------TVMSL  646 (768)
Q Consensus       584 l~t~~~~~t--l---~~h~~~V~sl~fspdg~~LaT-gs~DgtIrVWDl~t~~~~~~~~~~h~~-----------~V~sl  646 (768)
                      +.+++....  +   .+|...+.+++|+|||++|++ +..+++|++||..++.. +..+..|..           ....+
T Consensus        90 ~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i  168 (426)
T d1hzua2          90 LWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAI  168 (426)
T ss_dssp             TTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEE
T ss_pred             ccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce-eEEeeccCCCccceeecCCCceeEE
Confidence            998875433  2   346666778888999998755 45789999999998765 445444433           34555


Q ss_pred             EEeCCCCeEEEEEeCCCcEEEEECCCCee--EEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeecc--
Q 004207          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSC--AGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ--  721 (768)
Q Consensus       647 afsp~g~~lLaSgs~Dg~I~iWDl~sg~~--i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~~--  721 (768)
                      .+++++..++++....+.|.+++......  +..+.....+..+.|+|++.+++++. .++.+.+++..+........  
T Consensus       169 ~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  248 (426)
T d1hzua2         169 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG  248 (426)
T ss_dssp             EECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECS
T ss_pred             EECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccC
Confidence            66666665555555556666666655442  33444566788999999999988877 45678899998876554332  


Q ss_pred             ----------------------------eeEEeecCC--------CceEEeccCCCCeeEEEEeCCCCEEEE-------E
Q 004207          722 ----------------------------TLELWNMTE--------NKTLTLSAHDKLVSSLAASTVNGMVAS-------A  758 (768)
Q Consensus       722 ----------------------------~I~iwd~~~--------~~~~~l~~H~~~I~sla~spdg~~LaS-------g  758 (768)
                                                  .+.+|+...        ....++.+|...|..++|+|++.+|++       +
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~  328 (426)
T d1hzua2         249 KTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA  328 (426)
T ss_dssp             SCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSH
T ss_pred             CcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCc
Confidence                                        333444322        223367789999999999999999994       5


Q ss_pred             ECCCcEEEeC
Q 004207          759 SHDKCVKIWK  768 (768)
Q Consensus       759 s~DG~V~IWD  768 (768)
                      +.|++|+|||
T Consensus       329 ~~~~tv~vwd  338 (426)
T d1hzua2         329 RISQSVAVFD  338 (426)
T ss_dssp             HHHTCEEEEE
T ss_pred             ccCCEEEEEE
Confidence            5688999997

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.76  E-value=9e-18  Score=174.91  Aligned_cols=244  Identities=11%  Similarity=0.081  Sum_probs=174.0

Q ss_pred             cccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEec-CCCCCeEEEEEcCCCCEEE-EEeCCCc
Q 004207          501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLA-TGGHDKK  578 (768)
Q Consensus       501 ~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~I~sl~fSpdg~~La-Sgs~Dg~  578 (768)
                      ++...++++++++.|++|.+|+....                   +.+.++. .|...+.+++|+|||++++ +++.++.
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~-------------------~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~   63 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASD-------------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD   63 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTT-------------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTE
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCC-------------------CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCc
Confidence            35667899999999999999965332                   3344444 4556688999999999875 5567899


Q ss_pred             EEEEECCCCeEEEEeccCC------CCEEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCCee--EEEeec
Q 004207          579 AVLWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSS------------ADRTVRVWDTENPDYS--LRTFTG  638 (768)
Q Consensus       579 I~VWdl~t~~~~~tl~~h~------~~V~sl~fspdg~~LaTgs------------~DgtIrVWDl~t~~~~--~~~~~~  638 (768)
                      |++||+.+++.+..+....      ..+..++|+|||+++++++            .++.+.+||..+++..  +.... 
T Consensus        64 v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-  142 (346)
T d1jmxb_          64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-  142 (346)
T ss_dssp             EEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-
T ss_pred             EEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeee-
Confidence            9999999999987775432      2356789999999988775            4678899998876532  11211 


Q ss_pred             CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEE---------------------
Q 004207          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI---------------------  697 (768)
Q Consensus       639 h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~l---------------------  697 (768)
                      ....+..+.+.+++. ++++   +..+.+||+.+++.+..+..+.....+.++|++..+                     
T Consensus       143 ~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (346)
T d1jmxb_         143 MPRQVYLMRAADDGS-LYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD  218 (346)
T ss_dssp             CCSSCCCEEECTTSC-EEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--
T ss_pred             ccCceEEEEecCCCE-EEEe---CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeecc
Confidence            234566667776654 4433   346899999999988887765444444444443322                     


Q ss_pred             -----EEEEcCCeEEEEECCCceEeeec-------------------------ceeEEeecCCCceEEeccCCCCeeEEE
Q 004207          698 -----LAAAIENYISILDVETQVCRLKL-------------------------QTLELWNMTENKTLTLSAHDKLVSSLA  747 (768)
Q Consensus       698 -----lags~Dg~I~IwD~~t~~~~~~~-------------------------~~I~iwd~~~~~~~~l~~H~~~I~sla  747 (768)
                           .++..+..+.+||..+.......                         ..+.+||..+++.+....+...+.+++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~va  298 (346)
T d1jmxb_         219 DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVA  298 (346)
T ss_dssp             -----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEECSSCCCEEE
T ss_pred             CceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcCCCCEEEEE
Confidence                 22334455777887765432211                         168899999988876666667799999


Q ss_pred             EeCCCCEEEEEECCCcEEEeC
Q 004207          748 ASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       748 ~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |+|||++|++++.||.|+|||
T Consensus       299 ~s~DG~~l~v~~~d~~v~v~D  319 (346)
T d1jmxb_         299 FDKKGDKLYLGGTFNDLAVFN  319 (346)
T ss_dssp             ECSSSSCEEEESBSSEEEEEE
T ss_pred             EcCCCCEEEEEeCCCcEEEEE
Confidence            999999999999999999997

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.72  E-value=1.4e-16  Score=174.74  Aligned_cols=191  Identities=8%  Similarity=0.030  Sum_probs=135.9

Q ss_pred             cCCCCCceEEEEecCCCC-------cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEE
Q 004207          476 HNGASSKSLLMFGSDGMG-------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEF  548 (768)
Q Consensus       476 ~s~s~~~~~l~~~~~~~~-------~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~  548 (768)
                      ...+.+..+.+|......       ........+.+.++++++++.|+++++|+.....              .....++
T Consensus        36 V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~--------------~~~~~~i  101 (426)
T d1hzua2          36 VTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKE--------------PTKVAEI  101 (426)
T ss_dssp             EEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSS--------------CEEEEEE
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCc--------------eeEEEEE
Confidence            455677788888776431       1234467789999999999999999999664331              2223344


Q ss_pred             EEecCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCC-----------EEEEEEcCCCCEEEEEe
Q 004207          549 QLIPASTSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQW-----------ITDVRFSPSLSRLATSS  616 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSpdg~~La-Sgs~Dg~I~VWdl~t~~~~~tl~~h~~~-----------V~sl~fspdg~~LaTgs  616 (768)
                      ....+|.+.+.+++|+|||++|+ ++..++.|++||..+++++..+..|...           ...+.+++++..++...
T Consensus       102 ~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~  181 (426)
T d1hzua2         102 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  181 (426)
T ss_dssp             ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEec
Confidence            55556777788899999999865 4558899999999999988777655433           44556666666555444


Q ss_pred             C-CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe
Q 004207          617 A-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (768)
Q Consensus       617 ~-DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~  680 (768)
                      . .+.|.+++.............+...+..+.|+|++++++++...+..+.+||..+++.+..+.
T Consensus       182 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~  246 (426)
T d1hzua2         182 KETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD  246 (426)
T ss_dssp             TTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEE
T ss_pred             CCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEec
Confidence            3 345666666555443444556778899999999999888888888888899888777665554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=2.9e-15  Score=155.49  Aligned_cols=244  Identities=10%  Similarity=0.132  Sum_probs=165.5

Q ss_pred             EEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 004207          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTES  586 (768)
Q Consensus       508 ~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs-~Dg~I~VWdl~t  586 (768)
                      ++++++.|++|++|......                .++.+.. ..|.+.|.+|+|+|||++|++++ .|+.|++|++..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~----------------~l~~~~~-~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~   68 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEG----------------ALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP   68 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTS----------------CEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEECCCCCcEEEEEEcCCC----------------CeEEEEE-EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeC
Confidence            45778899999999654321                1222222 35778899999999999886555 589999999876


Q ss_pred             CeEEEEe---ccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCee-EEEeecCCCCeEEEEEeCCCCeEEEEEeC
Q 004207          587 FTVKSTL---EEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (768)
Q Consensus       587 ~~~~~tl---~~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~t~~~~-~~~~~~h~~~V~slafsp~g~~lLaSgs~  661 (768)
                      .....++   ..+...+..++|+|||++|++++. +++|.+|+....... ......+...+.++.|+|++..+++++..
T Consensus        69 ~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~  148 (333)
T d1ri6a_          69 DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK  148 (333)
T ss_dssp             TTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG
T ss_pred             CCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccc
Confidence            5432222   234455788999999999999886 668999998765432 23344567788999999999988877777


Q ss_pred             CCcEEEEECCCCeeEEEE-----e--cCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEee----e----------
Q 004207          662 NSEIRYWSINNGSCAGVF-----K--CQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRL----K----------  719 (768)
Q Consensus       662 Dg~I~iWDl~sg~~i~~~-----~--~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~----~----------  719 (768)
                      +..|.+|+..........     .  .......++|++++.+++... ..+.+.+|+........    .          
T Consensus       149 ~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  228 (333)
T d1ri6a_         149 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD  228 (333)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred             cceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCc
Confidence            888999998764322211     1  234567899999988877665 44566777653321000    0          


Q ss_pred             ----------------------cceeEEeecCCCc-eE---EeccCCCCeeEEEEeCCCCEEEEEEC-CCcEEEeC
Q 004207          720 ----------------------LQTLELWNMTENK-TL---TLSAHDKLVSSLAASTVNGMVASASH-DKCVKIWK  768 (768)
Q Consensus       720 ----------------------~~~I~iwd~~~~~-~~---~l~~H~~~I~sla~spdg~~LaSgs~-DG~V~IWD  768 (768)
                                            ...+.+|++.... ..   ....+...+.+++|+|||++|++++. ++.|+||+
T Consensus       229 ~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~  304 (333)
T d1ri6a_         229 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE  304 (333)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             cccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence                                  0045666654332 11   22234456789999999998877764 68899984

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.69  E-value=5.6e-15  Score=150.74  Aligned_cols=196  Identities=11%  Similarity=0.138  Sum_probs=156.6

Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEE
Q 004207          570 LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF  648 (768)
Q Consensus       570 LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~La-Tgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slaf  648 (768)
                      +++++.|++|.|||+++++.+.++... ..+..++|+|||++|+ +++.+++|++||+.+++. +..+..+. .+..++|
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-~~~~~~~~-~~~~~~~   81 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGVAV   81 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce-eeeeeccc-ccccccc
Confidence            456678999999999999999988754 4578999999999875 666789999999998765 66666554 5789999


Q ss_pred             eCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeecc------
Q 004207          649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ------  721 (768)
Q Consensus       649 sp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~~------  721 (768)
                      ++++..+++++..++.+.+||..+++.+..+.......+++|+|++..+++++ .++.+.+|+..+........      
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (301)
T d1l0qa2          82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPK  161 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEE
T ss_pred             ccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCce
Confidence            99999999899999999999999999999999888899999999999877665 57789999998876554432      


Q ss_pred             -------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC---CCcEEEeC
Q 004207          722 -------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH---DKCVKIWK  768 (768)
Q Consensus       722 -------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~---DG~V~IWD  768 (768)
                                         .+.+|+...........+...+..++|++++..+++++.   ++.|++||
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D  230 (301)
T d1l0qa2         162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID  230 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred             EEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeee
Confidence                               344444444444444445566788999999998876654   46799996

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=1.7e-15  Score=167.41  Aligned_cols=186  Identities=8%  Similarity=-0.027  Sum_probs=144.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE----EEeecCCC
Q 004207          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL----RTFTGHST  641 (768)
Q Consensus       566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~----~~~~~h~~  641 (768)
                      +.-++++.+.||+|.|||..+++++..+..|. .+..++|+|||++|++++.|++|++||+.+++...    .....|.+
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~  109 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  109 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence            33346889999999999999999999998774 69999999999999999999999999998866322    22234556


Q ss_pred             CeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec------------CCCeeEEEEecCCCEEEEEE-cCCeEEE
Q 004207          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLGRILAAA-IENYISI  708 (768)
Q Consensus       642 ~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~------------~~~i~sl~fsp~~~~llags-~Dg~I~I  708 (768)
                      .+.++.|+|||+.+++++..++.|++||..+++++..+..            ......+.++|++.+++++. .++.|.+
T Consensus       110 ~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~  189 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  189 (432)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEE
Confidence            6667778889999999999999999999999998887653            23355688899888765544 5688888


Q ss_pred             EECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC-cEEEe
Q 004207          709 LDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK-CVKIW  767 (768)
Q Consensus       709 wD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG-~V~IW  767 (768)
                      ||..+....      .++.+         .+...+.+++|+|+++++++++.++ .|.+|
T Consensus       190 ~d~~~~~~~------~~~~i---------~~g~~~~~~~~spdg~~~~va~~~~~~v~v~  234 (432)
T d1qksa2         190 VDYTDLNNL------KTTEI---------SAERFLHDGGLDGSHRYFITAANARNKLVVI  234 (432)
T ss_dssp             EETTCSSEE------EEEEE---------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred             EEccCCCcc------eEEEE---------cccCccccceECCCCCEEEEeccccceEEEe
Confidence            888765432      22221         3455688999999999988888655 45554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.65  E-value=4.5e-14  Score=149.73  Aligned_cols=213  Identities=10%  Similarity=0.023  Sum_probs=154.2

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeEEEEeccCCCCE-------EEEEEcCCCC
Q 004207          548 FQLIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHTQWI-------TDVRFSPSLS  610 (768)
Q Consensus       548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~----------Dg~I~VWdl~t~~~~~tl~~h~~~V-------~sl~fspdg~  610 (768)
                      +..+..+..+  .++|+|||++|++++.          ++.|.|||..+++++..+..+....       ..+.|+++++
T Consensus        60 ~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  137 (373)
T d2madh_          60 LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA  137 (373)
T ss_pred             EEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCC
Confidence            3344455443  6999999999988753          5789999999999998887665544       3467888888


Q ss_pred             EEEEEeC--CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-----C
Q 004207          611 RLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----S  683 (768)
Q Consensus       611 ~LaTgs~--DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-----~  683 (768)
                      .++....  ++.+.+|+....+.     ..+...+.++.|+|+++.++++.+.|+.+.+||...+.+.......     .
T Consensus       138 ~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~  212 (373)
T d2madh_         138 DLLFFQFAAGPAVGLVVQGGSSD-----DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQ  212 (373)
T ss_pred             cEEEEEEcCCCceEEeeccCCeE-----EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCc
Confidence            7665543  56788888876543     2233456789999999999999999999999999988776655421     1


Q ss_pred             --CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeec-----------------------------------------
Q 004207          684 --GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-----------------------------------------  720 (768)
Q Consensus       684 --~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~-----------------------------------------  720 (768)
                        ....+.+.++ ..+++.+.++.+.+|+..+.......                                         
T Consensus       213 ~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  291 (373)
T d2madh_         213 NLLTQPAQANKS-GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW  291 (373)
T ss_pred             cceeeeEEECCC-ceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceE
Confidence              1233444554 44556667778888776654211000                                         


Q ss_pred             ------ceeEEeecCCCceEEeccCCCCeeEEEEeCCCC--EEEEEECCCcEEEeC
Q 004207          721 ------QTLELWNMTENKTLTLSAHDKLVSSLAASTVNG--MVASASHDKCVKIWK  768 (768)
Q Consensus       721 ------~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~--~LaSgs~DG~V~IWD  768 (768)
                            ..+.+||..+++.+....+...+.+++|+|||+  ++++++.|+.|+|||
T Consensus       292 ~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D  347 (373)
T d2madh_         292 KLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             EeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence                  157788988888877777888899999999998  456888999999997

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=1.1e-14  Score=150.49  Aligned_cols=189  Identities=12%  Similarity=0.083  Sum_probs=134.7

Q ss_pred             CEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEec--CCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEE
Q 004207          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP--ASTSKVESCHFSPDGKLL-ATGGHDKKAVLWC  583 (768)
Q Consensus       507 ~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~--~H~~~I~sl~fSpdg~~L-aSgs~Dg~I~VWd  583 (768)
                      +|+++++.|++|.+|+....                   +.+..+.  .+...+.+++|+|||+++ ++++.++.|.+||
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~-------------------~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D   62 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM-------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID   62 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT-------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eEEEEEcCCCEEEEEECCCC-------------------eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEE
Confidence            57899999999999965432                   2233333  344568899999999987 4667789999999


Q ss_pred             CCCCeEEEEeccC----------------------------------------------------------CCCEEEEEE
Q 004207          584 TESFTVKSTLEEH----------------------------------------------------------TQWITDVRF  605 (768)
Q Consensus       584 l~t~~~~~tl~~h----------------------------------------------------------~~~V~sl~f  605 (768)
                      +.+++.+..+..+                                                          ...+.+++|
T Consensus        63 ~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  142 (337)
T d1pbyb_          63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAW  142 (337)
T ss_dssp             TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEE
T ss_pred             CCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEE
Confidence            9988776654322                                                          122345677


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCCe------------------------------------------------------
Q 004207          606 SPSLSRLATSSADRTVRVWDTENPDY------------------------------------------------------  631 (768)
Q Consensus       606 spdg~~LaTgs~DgtIrVWDl~t~~~------------------------------------------------------  631 (768)
                      +|+++++++++.+  +.+||+.+++.                                                      
T Consensus       143 s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (337)
T d1pbyb_         143 ARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG  220 (337)
T ss_dssp             CTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred             cCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCcc
Confidence            7777777776533  55666543221                                                      


Q ss_pred             -----------eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEE
Q 004207          632 -----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA  700 (768)
Q Consensus       632 -----------~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llag  700 (768)
                                 ....+..+...+.++.+++++..++ ++  ++.|++||+.+++++..+.....+.+++|+|++.+|+++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~  297 (337)
T d1pbyb_         221 LLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF-GA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG  297 (337)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEE-EE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE
T ss_pred             EEEEEcCCCcEEEEEecCCCcceEEEEecccceEEE-Ec--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEE
Confidence                       0111223444556666777765333 33  578999999999999999988889999999999999999


Q ss_pred             EcCCeEEEEECCCceEeee
Q 004207          701 AIENYISILDVETQVCRLK  719 (768)
Q Consensus       701 s~Dg~I~IwD~~t~~~~~~  719 (768)
                      +.++.|.+||..+.+.+..
T Consensus       298 ~~~~~i~v~D~~t~~~v~~  316 (337)
T d1pbyb_         298 GALGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             SBSSEEEEEETTTCCEEEE
T ss_pred             eCCCcEEEEECCCCcEEEE
Confidence            9999999999998776543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.56  E-value=6.3e-14  Score=145.23  Aligned_cols=203  Identities=11%  Similarity=0.008  Sum_probs=148.2

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCeeEEEeec
Q 004207          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTG  638 (768)
Q Consensus       561 l~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~~La-Tgs~DgtIrVWDl~t~~~~~~~~~~  638 (768)
                      ++|+++++||++++.|++|.|||+++++++.++. .|...+.+++|+|||++++ +++.++.|++||+.+++. +..+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~-~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee-eeeecc
Confidence            4689999999999999999999999999999886 4566788999999999875 555789999999998765 333332


Q ss_pred             CC------CCeEEEEEeCCCCeEEEEEe-----------CCCcEEEEECCCCeeEEEE---ecCCCeeEEEEecCCCEEE
Q 004207          639 HS------TTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVF---KCQSGATQMRFQPRLGRIL  698 (768)
Q Consensus       639 h~------~~V~slafsp~g~~lLaSgs-----------~Dg~I~iWDl~sg~~i~~~---~~~~~i~sl~fsp~~~~ll  698 (768)
                      ..      ..+..++|+|+|+.++++..           .+..+.+||..+++....+   .....+..+.+++++..+ 
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  159 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY-  159 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE-
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEE-
Confidence            21      24567999999987776542           4778999998877654433   234456666677765444 


Q ss_pred             EEEcCCeEEEEECCCceEeeecc--------------------------------------------------eeEEeec
Q 004207          699 AAAIENYISILDVETQVCRLKLQ--------------------------------------------------TLELWNM  728 (768)
Q Consensus       699 ags~Dg~I~IwD~~t~~~~~~~~--------------------------------------------------~I~iwd~  728 (768)
                      +.  ++.+.+||+.+......+.                                                  .+.+|+.
T Consensus       160 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
T d1jmxb_         160 VA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL  237 (346)
T ss_dssp             EE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred             Ee--CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence            33  3557888877655443321                                                  4566777


Q ss_pred             CCCceE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          729 TENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       729 ~~~~~~--~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ..+...  ....|...+.++.+++++.+++++.. +.|++||
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d  278 (346)
T d1jmxb_         238 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYD  278 (346)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEE
T ss_pred             CCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEE
Confidence            766644  34577888999999999988877664 5788886

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=1.7e-13  Score=143.67  Aligned_cols=213  Identities=11%  Similarity=0.064  Sum_probs=142.2

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccCCC-------CEEEEEEcCCCCE
Q 004207          549 QLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPSLSR  611 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSpdg~~LaSgs----------~Dg~I~VWdl~t~~~~~tl~~h~~-------~V~sl~fspdg~~  611 (768)
                      ..+..+.  +..++|||||++|++++          .|+.|++||+.+++.+..+..+..       ....++|++++++
T Consensus        42 ~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  119 (355)
T d2bbkh_          42 GMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT  119 (355)
T ss_dssp             EEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSE
T ss_pred             EEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCe
Confidence            3344443  34799999999887643          478999999999998887754332       2356799999998


Q ss_pred             EEEEeC--CCcEEEEECCCCCeeEEEeecCCC-------CeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC
Q 004207          612 LATSSA--DRTVRVWDTENPDYSLRTFTGHST-------TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ  682 (768)
Q Consensus       612 LaTgs~--DgtIrVWDl~t~~~~~~~~~~h~~-------~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~  682 (768)
                      +++++.  +..+++||..+++. +..+..+..       ....+.+++++..+++....++.+.+++.......    ..
T Consensus       120 ~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~----~~  194 (355)
T d2bbkh_         120 LLFYQFSPAPAVGVVDLEGKAF-KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE----DE  194 (355)
T ss_dssp             EEEEECSSSCEEEEEETTTTEE-EEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT----TS
T ss_pred             eEEecCCCCceeeeeecCCCcE-eeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce----ec
Confidence            887754  56899999988764 444433221       22334555555555444444445555544332211    12


Q ss_pred             CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeec------------------------------------------
Q 004207          683 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL------------------------------------------  720 (768)
Q Consensus       683 ~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~------------------------------------------  720 (768)
                      ..+....+.+++..+++++.++.+++|++.........                                          
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~  274 (355)
T d2bbkh_         195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR  274 (355)
T ss_dssp             CBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred             ceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCcee
Confidence            22445667777888888888999999988765321100                                          


Q ss_pred             -----ceeEEeecCCCceEEeccCCCCeeEEEEeCCCC--EEEEEECCCcEEEeC
Q 004207          721 -----QTLELWNMTENKTLTLSAHDKLVSSLAASTVNG--MVASASHDKCVKIWK  768 (768)
Q Consensus       721 -----~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~--~LaSgs~DG~V~IWD  768 (768)
                           ..+.+||..+++.+....+...+.+++|+|||+  ++++++.|+.|+|||
T Consensus       275 ~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D  329 (355)
T d2bbkh_         275 HKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHD  329 (355)
T ss_dssp             TTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             ecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEE
Confidence                 057789988888775444556689999999997  456677899999997

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=1.2e-11  Score=127.50  Aligned_cols=189  Identities=10%  Similarity=0.142  Sum_probs=132.0

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEE--EeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCeeE--EEeecCCCCe
Q 004207          569 LLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSL--RTFTGHSTTV  643 (768)
Q Consensus       569 ~LaSgs~Dg~I~VWdl~t~~~~~--tl~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVWDl~t~~~~~--~~~~~h~~~V  643 (768)
                      .+++++.|++|+||++.+...+.  ....|.+.|.+|+|+|||++|++++ .|+.|++|++.......  .....+...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            45777899999999987643322  2235778899999999999986655 48999999998655322  2223345667


Q ss_pred             EEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe---cCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCceEeee
Q 004207          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLK  719 (768)
Q Consensus       644 ~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~---~~~~i~sl~fsp~~~~llags~-Dg~I~IwD~~t~~~~~~  719 (768)
                      ..++|+|+|+.+++++..++.|.+|+...........   ....+.++.++|++.++++++. +..|.+|+.........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            8899999999888777778899999988766544433   3456888999999999888874 56788998766433211


Q ss_pred             cceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC-CCcEEEe
Q 004207          720 LQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-DKCVKIW  767 (768)
Q Consensus       720 ~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~-DG~V~IW  767 (768)
                      ...          ......+...+..++|++++.+++.... .+...+|
T Consensus       166 ~~~----------~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~  204 (333)
T d1ri6a_         166 QDP----------AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVW  204 (333)
T ss_dssp             EEE----------EEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eec----------eeeeeecCCCccEEEEeccceeEEeeccccCceEEE
Confidence            110          0011234455788999999988776654 4444444

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.37  E-value=7.4e-11  Score=124.35  Aligned_cols=160  Identities=13%  Similarity=-0.003  Sum_probs=121.0

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEE-----eCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC---------
Q 004207          552 PASTSKVESCHFSPDGKLLATG-----GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---------  617 (768)
Q Consensus       552 ~~H~~~I~sl~fSpdg~~LaSg-----s~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~---------  617 (768)
                      ..+.+++.+++++|||+.+++.     +.++.|.+||..+++.+.++..+...  .++|+|||++|++++.         
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence            3678889999999999988764     23457999999999999998766543  7999999999998753         


Q ss_pred             -CCcEEEEECCCCCeeEEEeecCCCCe-------EEEEEeCCCCeEEEEE-eCCCcEEEEECCCCeeEEEEecCCCeeEE
Q 004207          618 -DRTVRVWDTENPDYSLRTFTGHSTTV-------MSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGATQM  688 (768)
Q Consensus       618 -DgtIrVWDl~t~~~~~~~~~~h~~~V-------~slafsp~g~~lLaSg-s~Dg~I~iWDl~sg~~i~~~~~~~~i~sl  688 (768)
                       ++.|+|||+.+++. +..+..+....       ..+.|+++++.+++.. ..++.+.+|+....+.....   ....++
T Consensus        95 ~~~~v~v~D~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  170 (373)
T d2madh_          95 RTDYVEVFDPVTFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL---SSPTCY  170 (373)
T ss_pred             cceEEEEEECCCCcE-EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe---ccceeE
Confidence             57899999998775 44444443332       4577888887665443 45678889998877665544   345678


Q ss_pred             EEecCCCEE-EEEEcCCeEEEEECCCceEe
Q 004207          689 RFQPRLGRI-LAAAIENYISILDVETQVCR  717 (768)
Q Consensus       689 ~fsp~~~~l-lags~Dg~I~IwD~~t~~~~  717 (768)
                      .|+|++..+ ++.+.|+.+.+||..+....
T Consensus       171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~  200 (373)
T d2madh_         171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAG  200 (373)
T ss_pred             EEecCCCcEEEEEcCCCeEEEEEcCCceee
Confidence            899998765 56778999999998776544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.37  E-value=3.7e-12  Score=135.69  Aligned_cols=211  Identities=8%  Similarity=-0.027  Sum_probs=129.1

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccCCC-------CEEEEEEcCCCCE
Q 004207          549 QLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPSLSR  611 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSpdg~~LaSgs----------~Dg~I~VWdl~t~~~~~tl~~h~~-------~V~sl~fspdg~~  611 (768)
                      ..+..+...  .++|+|||++|++++          .|+.|.+||..+++++..+..+..       ....++|+|||++
T Consensus        60 ~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~  137 (368)
T d1mdah_          60 GHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC  137 (368)
T ss_dssp             EEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSC
T ss_pred             EEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCE
Confidence            334444444  589999999888764          367899999999999888764432       2346899999999


Q ss_pred             EEEEe-CCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-------CC
Q 004207          612 LATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QS  683 (768)
Q Consensus       612 LaTgs-~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-------~~  683 (768)
                      |+++. .++.|.+||+.+++. ...+..+....    +.+.+...+++.+.||.+.+|++...........       ..
T Consensus       138 l~va~~~~~~v~~~d~~~~~~-~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (368)
T d1mdah_         138 LLFFLFGSSAAAGLSVPGASD-DQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC  212 (368)
T ss_dssp             EEEEECSSSCEEEEEETTTEE-EEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB
T ss_pred             EEEEeCCCCeEEEEECCCCcE-eEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccccc
Confidence            98876 468999999998765 44444433221    2233344566667777877777764433222211       11


Q ss_pred             CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEee---------------------------------------------
Q 004207          684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRL---------------------------------------------  718 (768)
Q Consensus       684 ~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~---------------------------------------------  718 (768)
                      .+..+.+.+++..++.  ..+.++++++.......                                             
T Consensus       213 ~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~  290 (368)
T d1mdah_         213 SSQAAQANYPGMLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL  290 (368)
T ss_dssp             CSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred             ceeecccccCcEEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceee
Confidence            1223333333222211  12222222222111000                                             


Q ss_pred             -ecceeEEeecCCCceEEeccCCCCeeEEEEeCCCC--EEEEEECCCcEEEeC
Q 004207          719 -KLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNG--MVASASHDKCVKIWK  768 (768)
Q Consensus       719 -~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~--~LaSgs~DG~V~IWD  768 (768)
                       ....+.+||..+++.+....+...+.+++|+||++  ++++++.|+.|+|||
T Consensus       291 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D  343 (368)
T d1mdah_         291 AAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             SCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             cCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence             00146778888887775555556789999999996  345667799999997

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.23  E-value=2.6e-10  Score=118.79  Aligned_cols=197  Identities=10%  Similarity=-0.001  Sum_probs=132.0

Q ss_pred             CeEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe----------CCCcE
Q 004207          557 KVESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTV  621 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs-----~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs----------~DgtI  621 (768)
                      ++.-.+.+||++.+++..     .+..|.|||..+++.+.++..+..+  .++|+||+++|++++          .|+.|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence            344446689999887653     4567999999999999988766544  799999999887653          47899


Q ss_pred             EEEECCCCCeeEEEeecCC-------CCeEEEEEeCCCCeEEEEE-eCCCcEEEEECCCCeeEEEEecCCCeeEEEEecC
Q 004207          622 RVWDTENPDYSLRTFTGHS-------TTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR  693 (768)
Q Consensus       622 rVWDl~t~~~~~~~~~~h~-------~~V~slafsp~g~~lLaSg-s~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~  693 (768)
                      ++||+.+++. +..+..+.       .....++|+++++.+++.. +.+..+.+||..+++.+..+.........  ...
T Consensus        81 ~v~D~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  157 (355)
T d2bbkh_          81 EVFDPVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF--PTA  157 (355)
T ss_dssp             EEECTTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE--EEE
T ss_pred             EEEECCCCCE-EEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEe--ecC
Confidence            9999998875 44333222       2345689999998776543 45678999999999998888754433221  112


Q ss_pred             CCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          694 LGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       694 ~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ....++.+.|+...++.......      +.+++.....    ..+...+.+..+.+++..++.++.++.+++|+
T Consensus       158 ~~~~~~~~~dg~~~~v~~~~~~~------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  222 (355)
T d2bbkh_         158 PDTFFMHCRDGSLAKVAFGTEGT------PEITHTEVFH----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQID  222 (355)
T ss_dssp             TTEEEEEETTSCEEEEECCSSSC------CEEEECCCCS----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEE
T ss_pred             CcceEEEcCCCCEEEEEecCCCe------EEEEeccccc----ceecceeeeccccCCCCeEEEecCCCeEEEEe
Confidence            23445555666555554433221      1112211111    13444566778888888999999999999985

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.15  E-value=3.9e-10  Score=123.84  Aligned_cols=108  Identities=18%  Similarity=0.089  Sum_probs=82.6

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 004207          551 IPASTSKVESCHFSPDGKLLATGGH---------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV  621 (768)
Q Consensus       551 l~~H~~~I~sl~fSpdg~~LaSgs~---------Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtI  621 (768)
                      +..|...|.++.|||||++|+.++.         ++.+.|||+.+++. ..+..|...+..+.|+|||++||.. .++.+
T Consensus        57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l  134 (470)
T d2bgra1          57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDI  134 (470)
T ss_dssp             TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEE
T ss_pred             hhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecccc
Confidence            4566788999999999999998753         56789999998875 4677888999999999999999986 56789


Q ss_pred             EEEECCCCCeeEEEeec-----------------CCCCeEEEEEeCCCCeEEEEEe
Q 004207          622 RVWDTENPDYSLRTFTG-----------------HSTTVMSLDFHPSKEDLLCSCD  660 (768)
Q Consensus       622 rVWDl~t~~~~~~~~~~-----------------h~~~V~slafsp~g~~lLaSgs  660 (768)
                      ++|+..++........+                 ..+....+.|+|+|+.+++...
T Consensus       135 ~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~  190 (470)
T d2bgra1         135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF  190 (470)
T ss_dssp             EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred             eEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEe
Confidence            99999877642222111                 2234566889999997765543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.07  E-value=5.7e-10  Score=122.01  Aligned_cols=198  Identities=11%  Similarity=-0.029  Sum_probs=137.2

Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEecc------------------------------CCCCEEEEEEcCCCCEEEEEe-CC
Q 004207          570 LATGGHDKKAVLWCTESFTVKSTLEE------------------------------HTQWITDVRFSPSLSRLATSS-AD  618 (768)
Q Consensus       570 LaSgs~Dg~I~VWdl~t~~~~~tl~~------------------------------h~~~V~sl~fspdg~~LaTgs-~D  618 (768)
                      |++++.+|.|+||++.+++.+.++..                              |...+....++|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            67888999999999999998887632                              223345555678999886665 67


Q ss_pred             CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcE------------------EEEECCCCeeEEEEe
Q 004207          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI------------------RYWSINNGSCAGVFK  680 (768)
Q Consensus       619 gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I------------------~iWDl~sg~~i~~~~  680 (768)
                      .+|.++|+++.+........+...+..++|+|+++..++++..+..+                  ..+|..+.+....+.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            79999999998753333344667899999999998766555444433                  558988888888888


Q ss_pred             cCCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCceEeee-----------------------cceeEEeecCCCceE-E
Q 004207          681 CQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLK-----------------------LQTLELWNMTENKTL-T  735 (768)
Q Consensus       681 ~~~~i~sl~fsp~~~~llags~Dg-~I~IwD~~t~~~~~~-----------------------~~~I~iwd~~~~~~~-~  735 (768)
                      .......+.|+|+++++++++.+. .+..++..+......                       ...+.+++......+ .
T Consensus       174 v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~  253 (441)
T d1qnia2         174 VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRY  253 (441)
T ss_dssp             ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEE
T ss_pred             cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEE
Confidence            888899999999999999888653 222222211110000                       113445554444444 3


Q ss_pred             eccCCCCeeEEEEeCCCCEEEE-EECCCcEEEeC
Q 004207          736 LSAHDKLVSSLAASTVNGMVAS-ASHDKCVKIWK  768 (768)
Q Consensus       736 l~~H~~~I~sla~spdg~~LaS-gs~DG~V~IWD  768 (768)
                      +..+ .....+.++|||+++++ +..|++|.|||
T Consensus       254 IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d  286 (441)
T d1qnia2         254 IPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIA  286 (441)
T ss_dssp             ECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEE
T ss_pred             EeCC-CCccCceECCCCCEEEEeCCcCCcEEEEE
Confidence            4433 34678999999998765 56799999996

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.05  E-value=3.2e-09  Score=115.99  Aligned_cols=209  Identities=10%  Similarity=0.040  Sum_probs=142.3

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEec-cCCCCEEEEEEcCCCC--EEEEEeCCC--------
Q 004207          552 PASTSKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLS--RLATSSADR--------  619 (768)
Q Consensus       552 ~~H~~~I~sl~fSpdg~~LaSg-s~Dg~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~--~LaTgs~Dg--------  619 (768)
                      ..|...+.+..++|||++|++. ..+.+|.++|++++++...+. .+...+..++|+|+++  |++..+.+.        
T Consensus        68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~  147 (441)
T d1qnia2          68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT  147 (441)
T ss_dssp             CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred             cccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence            3455667777778999988665 467899999999999887764 3567799999999988  444444332        


Q ss_pred             ---------cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeC-----------------------------
Q 004207          620 ---------TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------------------------  661 (768)
Q Consensus       620 ---------tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~-----------------------------  661 (768)
                               .+..+|..+.+...+...  ...+..++|+|+|+++++++..                             
T Consensus       148 ~~~~~~~~~~~~~iD~~t~~v~~qI~v--~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~  225 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETMDVAWQVIV--DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAA  225 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTCSEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHH
T ss_pred             ccccccccceEEeecCccceeeEEEec--CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEE
Confidence                     235578877665333333  2457889999999988877643                             


Q ss_pred             -----------CCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEE-EcCCeEEEEECCCceEeeecceeEEeecC
Q 004207          662 -----------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQTLELWNMT  729 (768)
Q Consensus       662 -----------Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llag-s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~  729 (768)
                                 ++.+.+++......+..+........+.++|+|++++++ ..+++|.+||+++........      +.
T Consensus       226 ~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~------~~  299 (441)
T d1qnia2         226 VKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDK------IE  299 (441)
T ss_dssp             HHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTS------SC
T ss_pred             ecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhcc------CC
Confidence                       234455555555667777776777889999999997765 478999999987643211000      00


Q ss_pred             CCceEE-eccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          730 ENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       730 ~~~~~~-l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ...++. .....-.....+|+++|..+.+...|..|..|+
T Consensus       300 ~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~  339 (441)
T d1qnia2         300 LRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWN  339 (441)
T ss_dssp             GGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             cceEEEeecccccCcccceecCCceEEEcccccceEEEec
Confidence            001111 111122355678999998888888999999995

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.03  E-value=5.9e-09  Score=110.29  Aligned_cols=162  Identities=9%  Similarity=-0.011  Sum_probs=104.0

Q ss_pred             EEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEeccCCCC-------EEEEEEcCCCCEEEEEeCC------------
Q 004207          559 ESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQW-------ITDVRFSPSLSRLATSSAD------------  618 (768)
Q Consensus       559 ~sl~fSpdg~~LaSgs-~Dg~I~VWdl~t~~~~~tl~~h~~~-------V~sl~fspdg~~LaTgs~D------------  618 (768)
                      ..++|+|||++|+++. .++.|.+||+.+++.+..+..+...       ...+.+++|++.++....+            
T Consensus       127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~  206 (368)
T d1mdah_         127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC  206 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccc
Confidence            4689999999988776 5799999999999988877554332       1223444444443333222            


Q ss_pred             ------------------------CcEEEEECCCCCeeEE-EeecC----------CCCeEEEEEeCCCCeEEEEEeCC-
Q 004207          619 ------------------------RTVRVWDTENPDYSLR-TFTGH----------STTVMSLDFHPSKEDLLCSCDNN-  662 (768)
Q Consensus       619 ------------------------gtIrVWDl~t~~~~~~-~~~~h----------~~~V~slafsp~g~~lLaSgs~D-  662 (768)
                                              +.++++++........ ....+          ......+++++++..++++...+ 
T Consensus       207 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~  286 (368)
T d1mdah_         207 TGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS  286 (368)
T ss_dssp             CTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECS
T ss_pred             ccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCC
Confidence                                    2233333332221100 00000          01223477888888776655433 


Q ss_pred             -------CcEEEEECCCCeeEEEEecCCCeeEEEEecCCCE-EE-EEEcCCeEEEEECCCceEeeec
Q 004207          663 -------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR-IL-AAAIENYISILDVETQVCRLKL  720 (768)
Q Consensus       663 -------g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~-ll-ags~Dg~I~IwD~~t~~~~~~~  720 (768)
                             ..|.+||..+++.+..+.....+..++|+|+++. ++ ++..++.|++||..+++.+..+
T Consensus       287 ~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i  353 (368)
T d1mdah_         287 RSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             SCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred             ceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence                   3589999999999988887778899999999874 44 4446899999999998875543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.02  E-value=8e-10  Score=121.26  Aligned_cols=193  Identities=13%  Similarity=0.108  Sum_probs=134.8

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc-----CCCCEEEEEEcCCCCEEEEEeC---------CCcEEEE
Q 004207          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSA---------DRTVRVW  624 (768)
Q Consensus       559 ~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~-----h~~~V~sl~fspdg~~LaTgs~---------DgtIrVW  624 (768)
                      ..+.|.+|+.++..  .|+.|.+||+.+++....+..     |...|.++.|+||+++|+.++.         ++.+.||
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            35789999987764  578899999999988765543     4567999999999999998753         5678999


Q ss_pred             ECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-------------------CCCe
Q 004207          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------------------QSGA  685 (768)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-------------------~~~i  685 (768)
                      |+.+++  +..+..|...+..+.|+|+|+.++.+  .++.+++|++.++........                   .+..
T Consensus        98 d~~~~~--~~~l~~~~~~~~~~~~SPDG~~ia~~--~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~  173 (470)
T d2bgra1          98 DLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (470)
T ss_dssp             ETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             ECCCCc--ccccccCCccccccccccCcceeeEe--ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCc
Confidence            999865  45677888999999999999977754  367899999998876654321                   1224


Q ss_pred             eEEEEecCCCEEEEEEcCCe-EEEEECC---Cc-----e-Eeee---------cceeEEeecCCCceEEe----------
Q 004207          686 TQMRFQPRLGRILAAAIENY-ISILDVE---TQ-----V-CRLK---------LQTLELWNMTENKTLTL----------  736 (768)
Q Consensus       686 ~sl~fsp~~~~llags~Dg~-I~IwD~~---t~-----~-~~~~---------~~~I~iwd~~~~~~~~l----------  736 (768)
                      ..+.|+|+|.+|+....|.. |..|++.   ..     . ....         ...+.+|++..+.....          
T Consensus       174 ~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  253 (470)
T d2bgra1         174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA  253 (470)
T ss_dssp             BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCH
T ss_pred             cccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCcc
Confidence            55789999999998876543 4443321   10     0 0000         11567777766543311          


Q ss_pred             --ccCCCCeeEEEEeCCCCEEEE
Q 004207          737 --SAHDKLVSSLAASTVNGMVAS  757 (768)
Q Consensus       737 --~~H~~~I~sla~spdg~~LaS  757 (768)
                        ......+..+.|.+++..++.
T Consensus       254 ~~~~~~~~~~~~~w~~~~~~~~~  276 (470)
T d2bgra1         254 SMLIGDHYLCDVTWATQERISLQ  276 (470)
T ss_dssp             HHHTSCEEEEEEEEEETTEEEEE
T ss_pred             ccCCCCceEEEEEEcCCCceeEE
Confidence              123345677888888765554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.83  E-value=3e-07  Score=94.86  Aligned_cols=224  Identities=13%  Similarity=0.047  Sum_probs=148.9

Q ss_pred             ccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 004207          500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA  579 (768)
Q Consensus       500 ~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I  579 (768)
                      .++.+.++++++...++.|..|.. +.                .    ...+......+.+++|++||+++++...++.+
T Consensus        33 iAv~pdG~l~vt~~~~~~I~~i~p-~g----------------~----~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~   91 (302)
T d2p4oa1          33 LASAPDGTIFVTNHEVGEIVSITP-DG----------------N----QQIHATVEGKVSGLAFTSNGDLVATGWNADSI   91 (302)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECT-TC----------------C----EEEEEECSSEEEEEEECTTSCEEEEEECTTSC
T ss_pred             EEECCCCCEEEEeCCCCEEEEEeC-CC----------------C----EEEEEcCCCCcceEEEcCCCCeEEEecCCceE
Confidence            345667788888888887777731 11                0    11223444679999999999999988888888


Q ss_pred             EEEECCCC--eEEEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeec---------CCCCeEEEE
Q 004207          580 VLWCTESF--TVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG---------HSTTVMSLD  647 (768)
Q Consensus       580 ~VWdl~t~--~~~~tl-~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~---------h~~~V~sla  647 (768)
                      .+|+....  ...... ......+..+++.++++++++.+.++.|..+|...+...+.....         ....+..+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~  171 (302)
T d2p4oa1          92 PVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLK  171 (302)
T ss_dssp             EEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEE
T ss_pred             EEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccc
Confidence            88876432  222111 224456899999999999999888999999998876543332221         112345566


Q ss_pred             EeCCCCeEEEEEeCCCcEEEEECCCCeeE---EEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeE
Q 004207          648 FHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLE  724 (768)
Q Consensus       648 fsp~g~~lLaSgs~Dg~I~iWDl~sg~~i---~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~  724 (768)
                      +.  +..++++....+.|..+++......   ..+........++|++++..+++...++.|..|+.......       
T Consensus       172 ~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~-------  242 (302)
T d2p4oa1         172 RF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTI-------  242 (302)
T ss_dssp             EE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEE-------
T ss_pred             cc--CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEE-------
Confidence            55  4568888888999999988754322   22333455678999999987777777888888877653221       


Q ss_pred             EeecCCCceEEeccCCCCeeEEEE---eCCCCEEEEEECC
Q 004207          725 LWNMTENKTLTLSAHDKLVSSLAA---STVNGMVASASHD  761 (768)
Q Consensus       725 iwd~~~~~~~~l~~H~~~I~sla~---spdg~~LaSgs~D  761 (768)
                      +.        .....-..+++++|   .+|++.|+.++..
T Consensus       243 ~~--------~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         243 IA--------QAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EE--------CGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EE--------ecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            11        11123345789999   6778878766654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=8.6e-07  Score=88.32  Aligned_cols=189  Identities=17%  Similarity=0.156  Sum_probs=122.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 004207          553 ASTSKVESCHFSPDGKLLATGGHDK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTEN  628 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs~Dg---~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~t  628 (768)
                      .+...+...+|||||+.||....+.   .+.+.+..++... .+..+...+.+..|+|++..++.... ++...++....
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~  114 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  114 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence            4456688999999999998765433   4667777766554 44456778899999999998877654 33333443333


Q ss_pred             CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc--EEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCC--
Q 004207          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN--  704 (768)
Q Consensus       629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~--I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg--  704 (768)
                      ...................+++++..++++...++.  |.++++..+................|+|++..++..+.++  
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~  194 (269)
T d2hqsa1         115 ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ  194 (269)
T ss_dssp             TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSC
T ss_pred             ccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCc
Confidence            222234444455556667788888878877776664  5555666554444444445567789999999988877654  


Q ss_pred             -eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 004207          705 -YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH  760 (768)
Q Consensus       705 -~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~  760 (768)
                       .|.++|....                 .. ....+........|+|||++|+..+.
T Consensus       195 ~~i~~~~~~~~-----------------~~-~~~~~~~~~~~p~~SPDG~~i~f~s~  233 (269)
T d2hqsa1         195 QHIAKQDLATG-----------------GV-QVLSSTFLDETPSLAPNGTMVIYSSS  233 (269)
T ss_dssp             EEEEEEETTTC-----------------CE-EECCCSSSCEEEEECTTSSEEEEEEE
T ss_pred             eeeeEeecccc-----------------cc-eEeecCccccceEECCCCCEEEEEEc
Confidence             2333333332                 22 22234556678899999998875554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.78  E-value=7.1e-07  Score=91.93  Aligned_cols=202  Identities=10%  Similarity=0.056  Sum_probs=134.8

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (768)
Q Consensus       548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~  627 (768)
                      +..+.... .+..++++|||+++++...+++|..|+... +.. .+......+.+++|+++++++++...++.+.+|+..
T Consensus        21 ~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~~-~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          21 ITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQ-IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             EEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTC-CEE-EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             EEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CEE-EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence            44444333 488999999999999999999999998654 332 334456779999999999999998888999988876


Q ss_pred             CCCeeEEEe--ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-----------CCCeeEEEEecCC
Q 004207          628 NPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----------QSGATQMRFQPRL  694 (768)
Q Consensus       628 t~~~~~~~~--~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-----------~~~i~sl~fsp~~  694 (768)
                      ........+  ......+..+++.+++. ++++.+.++.|..+|...+........           ......+.++.+ 
T Consensus        98 ~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~-  175 (302)
T d2p4oa1          98 KSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN-  175 (302)
T ss_dssp             CTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT-
T ss_pred             ccccceeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC-
Confidence            544323332  23445688999999975 666777788999999887654433321           112445555542 


Q ss_pred             CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          695 GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       695 ~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ..+++.+..+.|+.++...........              ...+...+..++|+++|.++++...++.|..|+
T Consensus       176 ~l~~~~~~~~~i~~~~~~~~~~~~~~~--------------~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~  235 (302)
T d2p4oa1         176 FLYVSNTEKMLLLRIPVDSTDKPGEPE--------------IFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIA  235 (302)
T ss_dssp             EEEEEETTTTEEEEEEBCTTSCBCCCE--------------EEEESCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             ceeeecCCCCeEEeccccccccccccc--------------cccCCCCCcceEECCCCCEEEEEcCCCcEEEEC
Confidence            334444567778888776543221110              001223356788999988777777778777764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.71  E-value=2.6e-06  Score=90.35  Aligned_cols=161  Identities=11%  Similarity=0.092  Sum_probs=103.9

Q ss_pred             CCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCeeE--EEe--ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC
Q 004207          598 QWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSL--RTF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (768)
Q Consensus       598 ~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~t~~~~~--~~~--~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s  672 (768)
                      ..+.++.|+|++++|++++. ...|++|++.......  ...  .........++|+|+++.+++++..+++|.+|++..
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            34789999999998888765 3578888865433211  111  223467899999999998988998999999999876


Q ss_pred             CeeEEE-----Eec---------------CCCeeEEEEecCCCEEEEEEc-CC-----eEEEEECCCceEeeecceeEEe
Q 004207          673 GSCAGV-----FKC---------------QSGATQMRFQPRLGRILAAAI-EN-----YISILDVETQVCRLKLQTLELW  726 (768)
Q Consensus       673 g~~i~~-----~~~---------------~~~i~sl~fsp~~~~llags~-Dg-----~I~IwD~~t~~~~~~~~~I~iw  726 (768)
                      ......     ...               ......+.++|++.+++++.. ++     .|..|++..........  .  
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~--~--  300 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL--F--  300 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE--E--
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEe--E--
Confidence            543221     111               011456889999999888753 22     36666654422111100  0  


Q ss_pred             ecCCCceEEeccCCCCeeEEEEeC-CCCEEEEEE-CCCcEEEeC
Q 004207          727 NMTENKTLTLSAHDKLVSSLAAST-VNGMVASAS-HDKCVKIWK  768 (768)
Q Consensus       727 d~~~~~~~~l~~H~~~I~sla~sp-dg~~LaSgs-~DG~V~IWD  768 (768)
                            ............+++++| +|++|+++. .++.|.||+
T Consensus       301 ------~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~  338 (365)
T d1jofa_         301 ------LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             ------EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             ------eeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEE
Confidence                  011112334567899998 788777775 678899984

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.70  E-value=5.1e-06  Score=86.28  Aligned_cols=207  Identities=9%  Similarity=0.056  Sum_probs=131.4

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEEC
Q 004207          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDT  626 (768)
Q Consensus       551 l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D----gtIrVWDl  626 (768)
                      +......+..++|.++|+++++-..+++|+.|+.++.+....+.........++|+++|+++++...+    +.|...+.
T Consensus        35 ~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~  114 (319)
T d2dg1a1          35 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE  114 (319)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred             eccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcC
Confidence            33444557899999999988887788999999988877666665566678999999999877775432    23444444


Q ss_pred             CCCCeeEEEeecC---CCCeEEEEEeCCCCeEEEEEeC------CCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEE
Q 004207          627 ENPDYSLRTFTGH---STTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI  697 (768)
Q Consensus       627 ~t~~~~~~~~~~h---~~~V~slafsp~g~~lLaSgs~------Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~l  697 (768)
                      .....  .....+   ...+..+++.++|. ++++...      .+.+..++............-.....++|+|+++.|
T Consensus       115 ~~~~~--~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~l  191 (319)
T d2dg1a1         115 NGDNL--QDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVL  191 (319)
T ss_dssp             TSCSC--EEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEE
T ss_pred             CCcee--eeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceE
Confidence            44332  222222   23477899999987 5444321      233555665544333333334456789999999877


Q ss_pred             EEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          698 LAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       698 lags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +++. ..+.|..||+.............        .............+++..+|++.++....+.|.+||
T Consensus       192 yvad~~~~~I~~~d~~~~g~~~~~~~~~--------~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         192 WVTETTANRLHRIALEDDGVTIQPFGAT--------IPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN  255 (319)
T ss_dssp             EEEEGGGTEEEEEEECTTSSSEEEEEEE--------EEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             EEecccCCceEEEEEcCCCceeccccce--------eeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC
Confidence            6665 57889999876432111000000        001111222356789999999888888888888875

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.65  E-value=1.9e-06  Score=86.71  Aligned_cols=191  Identities=6%  Similarity=-0.019  Sum_probs=126.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee
Q 004207          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~  637 (768)
                      ...++++++++++++....+.|++++..+...+..... .....+|++.++++++++-..+..+.+++............
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~  137 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT  137 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccceeeeeeec
Confidence            56789999999887777766677766555544433332 34578999999998888776677787877765443222222


Q ss_pred             cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEE-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceE
Q 004207          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC  716 (768)
Q Consensus       638 ~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~-~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~  716 (768)
                       ......++++++++. ++++...++.|..+|.......... ..-.....+++++++..+++....+.|..|+......
T Consensus       138 -~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~  215 (260)
T d1rwia_         138 -GLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS  215 (260)
T ss_dssp             -SCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC
T ss_pred             -ccCCcceeeecCCCC-EeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE
Confidence             234567899999876 6667777888999998754332221 2234578899999877665555677787777654321


Q ss_pred             eeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          717 RLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       717 ~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      ..                .....-.....|++++++.++++-..++.|+.+
T Consensus       216 ~~----------------~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i  250 (260)
T d1rwia_         216 TV----------------LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL  250 (260)
T ss_dssp             EE----------------CCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             EE----------------EccCCCCCeEEEEEeCCCCEEEEECCCCEEEEE
Confidence            10                001222457899999999887776667777654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.62  E-value=7.1e-06  Score=85.10  Aligned_cols=192  Identities=11%  Similarity=0.100  Sum_probs=123.1

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC----CEEEEEEcCCCCEEEEEeC---------------
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----WITDVRFSPSLSRLATSSA---------------  617 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~----~V~sl~fspdg~~LaTgs~---------------  617 (768)
                      .-..+.|.++++.|+++.....|.+++.+............+    ..+++++.++|++.+|-..               
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~  151 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK  151 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccC
Confidence            356899999999888888777899999876543322111111    3578999999988877432               


Q ss_pred             CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCC----eEEEEEeCCCcEEEEECCCCeeEE---EE---ec--CCCe
Q 004207          618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE----DLLCSCDNNSEIRYWSINNGSCAG---VF---KC--QSGA  685 (768)
Q Consensus       618 DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~----~lLaSgs~Dg~I~iWDl~sg~~i~---~~---~~--~~~i  685 (768)
                      +|.|..++.+ ++. . .+...-.....++|+++++    .++++-+..+.|..||+.....+.   .+   ..  ....
T Consensus       152 ~G~v~~~~~d-g~~-~-~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~p  228 (314)
T d1pjxa_         152 FGSIYCFTTD-GQM-I-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA  228 (314)
T ss_dssp             CEEEEEECTT-SCE-E-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE
T ss_pred             CceEEEEeec-Cce-e-EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccc
Confidence            2344444443 222 2 2222334457899998764    466666778899999876432221   11   11  1235


Q ss_pred             eEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCC-EEEEEECCCcE
Q 004207          686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCV  764 (768)
Q Consensus       686 ~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs~DG~V  764 (768)
                      ..+++..+|+.+++....+.|.+||.+++....                .+......+++++|.++++ ++++.+.+|.|
T Consensus       229 dGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~----------------~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i  292 (314)
T d1pjxa_         229 DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKM----------------RIRCPFEKPSNLHFKPQTKTIFVTEHENNAV  292 (314)
T ss_dssp             EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSE----------------EEECSSSCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEE----------------EEECCCCCEEEEEEeCCCCEEEEEECCCCcE
Confidence            679999998877777788889999887654321                1223345688999999987 45566667777


Q ss_pred             EEe
Q 004207          765 KIW  767 (768)
Q Consensus       765 ~IW  767 (768)
                      ..+
T Consensus       293 ~~~  295 (314)
T d1pjxa_         293 WKF  295 (314)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.56  E-value=3.2e-05  Score=78.20  Aligned_cols=190  Identities=10%  Similarity=0.072  Sum_probs=125.2

Q ss_pred             eEEEEEcCCCC-EEEEE-eCCCcEEEEECCCCeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 004207          558 VESCHFSPDGK-LLATG-GHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (768)
Q Consensus       558 I~sl~fSpdg~-~LaSg-s~Dg~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~  634 (768)
                      -..+++..+.. ++++. +.++.|.+++.. ++....+. ........+++.+++.++++....+.+.+++.+. +. +.
T Consensus        72 p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~-~~  148 (279)
T d1q7fa_          72 PNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NV-LH  148 (279)
T ss_dssp             EEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE-EE
T ss_pred             cccccccccccccceeccCCcccccccccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ce-ee
Confidence            34455555433 44433 345577777754 55555553 3455678999999999888887778888888653 32 34


Q ss_pred             Ee--ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEEEEc-CCeEEE
Q 004207          635 TF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAI-ENYISI  708 (768)
Q Consensus       635 ~~--~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~llags~-Dg~I~I  708 (768)
                      .+  ..+......+++.+++. ++++....+.|++||.. ++.+..+..   ......+++.++++.+++-.. +..|.+
T Consensus       149 ~~g~~~~~~~~~~i~~d~~g~-i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~  226 (279)
T d1q7fa_         149 KFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTI  226 (279)
T ss_dssp             EEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEE
T ss_pred             cccccccccccceeeecccee-EEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEE
Confidence            33  34556788899998865 77778888999999975 666766643   234678999999886655443 346888


Q ss_pred             EECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          709 LDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       709 wD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      |+... +...      .|.        ..........|++.++|.++ +++.+..|++|+
T Consensus       227 f~~~G-~~~~------~~~--------~~~~~~~p~~vav~~dG~l~-V~~~n~~v~~fr  270 (279)
T d1q7fa_         227 FTQDG-QLIS------ALE--------SKVKHAQCFDVALMDDGSVV-LASKDYRLYIYR  270 (279)
T ss_dssp             ECTTS-CEEE------EEE--------ESSCCSCEEEEEEETTTEEE-EEETTTEEEEEE
T ss_pred             ECCCC-CEEE------EEe--------CCCCCCCEeEEEEeCCCcEE-EEeCCCeEEEEE
Confidence            87543 2211      111        11222357889999998654 556889999985

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=1.2e-05  Score=79.56  Aligned_cols=184  Identities=16%  Similarity=0.101  Sum_probs=114.5

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeC-CCc--EEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCCc--EE
Q 004207          549 QLIPASTSKVESCHFSPDGKLLATGGH-DKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--VR  622 (768)
Q Consensus       549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~-Dg~--I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~La-Tgs~Dgt--Ir  622 (768)
                      ..+..+.+.+.+..|+|+|+.++.... ++.  +..+........ ....+........+++++..++ +...++.  |.
T Consensus        76 ~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~  154 (269)
T d2hqsa1          76 RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVY  154 (269)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             eEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEe
Confidence            344567788899999999998876554 333  333333333333 3333444556667777766544 4445554  45


Q ss_pred             EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEE--ECCCCeeEEEEecCCCeeEEEEecCCCEEEEE
Q 004207          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW--SINNGSCAGVFKCQSGATQMRFQPRLGRILAA  700 (768)
Q Consensus       623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iW--Dl~sg~~i~~~~~~~~i~sl~fsp~~~~llag  700 (768)
                      ++++..+.  ......+........|+|++..++++....+...+|  |...+. ...+..........|+|+|.+|+..
T Consensus       155 ~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~p~~SPDG~~i~f~  231 (269)
T d2hqsa1         155 KVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLSSTFLDETPSLAPNGTMVIYS  231 (269)
T ss_dssp             EEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC-EEECCCSSSCEEEEECTTSSEEEEE
T ss_pred             eeeccccc--ceeeecccccccccccccccceeEEEeecCCceeeeEeeccccc-ceEeecCccccceEECCCCCEEEEE
Confidence            55555543  344455667778889999999888887776666655  444443 3444445567788999999998876


Q ss_pred             EcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeC
Q 004207          701 AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAST  750 (768)
Q Consensus       701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~sp  750 (768)
                      +..+..              ..|.++++..+....+....+.+...+|+|
T Consensus       232 s~~~~~--------------~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         232 SSQGMG--------------SVLNLVSTDGRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEETTE--------------EEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred             EcCCCC--------------cEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence            653310              023444555555555556667788889998

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.53  E-value=1e-05  Score=85.56  Aligned_cols=160  Identities=11%  Similarity=0.059  Sum_probs=105.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CeEE--EEe--ccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 004207          555 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTES-FTVK--STL--EEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTE  627 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~-Dg~I~VWdl~t-~~~~--~tl--~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVWDl~  627 (768)
                      ...++++.|+|||+++++++. ...|.+|+... +...  ..+  .........++|+|+++++++.. .+++|.+|+++
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            345899999999998887754 44788887653 2222  111  22345689999999999886655 57899999997


Q ss_pred             CCCeeE-EE---ee--------------cCCCCeEEEEEeCCCCeEEEEEeCCCc-----EEEEECCCCeeEE-EE---e
Q 004207          628 NPDYSL-RT---FT--------------GHSTTVMSLDFHPSKEDLLCSCDNNSE-----IRYWSINNGSCAG-VF---K  680 (768)
Q Consensus       628 t~~~~~-~~---~~--------------~h~~~V~slafsp~g~~lLaSgs~Dg~-----I~iWDl~sg~~i~-~~---~  680 (768)
                      ...... ..   ..              .+......+.++|+|+.++++...+..     |..|++.....+. ..   .
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            654321 11   10              111235678999999988877654333     7778776532222 11   1


Q ss_pred             ---cCCCeeEEEEec-CCCEEEEEE-cCCeEEEEECCCc
Q 004207          681 ---CQSGATQMRFQP-RLGRILAAA-IENYISILDVETQ  714 (768)
Q Consensus       681 ---~~~~i~sl~fsp-~~~~llags-~Dg~I~IwD~~t~  714 (768)
                         .......++++| ++.+|+++. .++.|.+|++...
T Consensus       304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence               133467799998 678777765 6788999987654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.50  E-value=3.9e-05  Score=79.35  Aligned_cols=195  Identities=8%  Similarity=0.017  Sum_probs=123.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeEEEEecc--CCCCEEEEEEcCCCCEEEEEeCC------Cc
Q 004207          553 ASTSKVESCHFSPDGKLLATGGHD----KKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSAD------RT  620 (768)
Q Consensus       553 ~H~~~I~sl~fSpdg~~LaSgs~D----g~I~VWdl~t~~~~~tl~~--h~~~V~sl~fspdg~~LaTgs~D------gt  620 (768)
                      ........++|++||+++++...+    +.|...+..+.........  -...+..+++.++|++.++....      +.
T Consensus        79 ~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~  158 (319)
T d2dg1a1          79 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG  158 (319)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred             CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcce
Confidence            344567899999999988776432    3455556555544433322  12357889999999877664332      23


Q ss_pred             EEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC-eeEEEE----e----cCCCeeEEEEe
Q 004207          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVF----K----CQSGATQMRFQ  691 (768)
Q Consensus       621 IrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg-~~i~~~----~----~~~~i~sl~fs  691 (768)
                      |..++.+...  +..+...-.....|+|+|+++.++++-+..+.|..||+... ......    .    .......+++.
T Consensus       159 v~~~~~dg~~--~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD  236 (319)
T d2dg1a1         159 VYYVSPDFRT--VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID  236 (319)
T ss_dssp             EEEECTTSCC--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred             eEEEecccce--eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEc
Confidence            5555554332  23332233456789999999888888888899999998642 221111    1    12235679999


Q ss_pred             cCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 004207          692 PRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH  760 (768)
Q Consensus       692 p~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~  760 (768)
                      .+|+.+++....+.|.+||.. ++.+.      .+.+...    -.++...+++++|.+++..+++...
T Consensus       237 ~~G~l~Va~~~~g~V~~~~p~-G~~l~------~i~~P~~----~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         237 SDDNLYVAMYGQGRVLVFNKR-GYPIG------QILIPGR----DEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             TTCCEEEEEETTTEEEEECTT-SCEEE------EEECTTG----GGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCCCEEEEEcCCCEEEEECCC-CcEEE------EEeCCCc----CCCcCceeeeEEEeCCCCEEEEEcC
Confidence            999888888889999999965 43322      1222211    1144556889999988876666554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.47  E-value=6.2e-06  Score=82.72  Aligned_cols=191  Identities=10%  Similarity=0.009  Sum_probs=118.1

Q ss_pred             eEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEe
Q 004207          558 VESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (768)
Q Consensus       558 I~sl~fSpdg~~LaSg-s~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~  636 (768)
                      -.+|++.++|+++++. +..+.|..++............-......|+++++++++++....+.|++++..+... +...
T Consensus        16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~-~~~~   94 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT-VLPF   94 (260)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE-ECCC
T ss_pred             CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeecccee-eeee
Confidence            4789999999976654 4556777776554332222222223457889999998877776666776665544332 2222


Q ss_pred             ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE-EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004207          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV  715 (768)
Q Consensus       637 ~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~-~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~  715 (768)
                      . ......+|++.+++. ++++-..+..+..++........ ..........+++++++..+++...++.|..||.....
T Consensus        95 ~-~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~  172 (260)
T d1rwia_          95 D-GLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  172 (260)
T ss_dssp             C-SCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             e-eeeecccccccccce-eEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccce
Confidence            2 235678999999876 55555556667777765433222 11223456789999998877776777888888876643


Q ss_pred             EeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207          716 CRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  767 (768)
Q Consensus       716 ~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW  767 (768)
                      ...       +         ....-.....|++++++.++++....+.|..+
T Consensus       173 ~~~-------~---------~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~  208 (260)
T d1rwia_         173 QVV-------L---------PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKL  208 (260)
T ss_dssp             EEE-------C---------CCSSCCSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred             eee-------e---------eccccCCCccceeeeeeeeeeeecCCCEEEEE
Confidence            211       0         01233456778888888777776666666654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.38  E-value=3.2e-05  Score=79.92  Aligned_cols=201  Identities=8%  Similarity=0.067  Sum_probs=122.8

Q ss_pred             CCeEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCeEEEEeccC----CCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207          556 SKVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEH----TQWITDVRFSPSLSRLATSSADRTVRVW  624 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~-------Dg~I~VWdl~t~~~~~tl~~h----~~~V~sl~fspdg~~LaTgs~DgtIrVW  624 (768)
                      ....+++|.++|+++++...       +++|..||.+++.........    ......++|.++++.|+++.....|.++
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            34677899999997776433       467999998887655433221    1235789999999988888887889999


Q ss_pred             ECCCCCeeEEEeecCC---CCeEEEEEeCCCCeEEEEEeC---------------CCcEEEEECCCCeeEEEEecCCCee
Q 004207          625 DTENPDYSLRTFTGHS---TTVMSLDFHPSKEDLLCSCDN---------------NSEIRYWSINNGSCAGVFKCQSGAT  686 (768)
Q Consensus       625 Dl~t~~~~~~~~~~h~---~~V~slafsp~g~~lLaSgs~---------------Dg~I~iWDl~sg~~i~~~~~~~~i~  686 (768)
                      |.+.....+.......   .....+++.++|. ++++-..               +|.|..++.. ++.......-....
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pN  175 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPN  175 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEE
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcceee
Confidence            9875432211111111   1357899999987 4444321               2345555443 44444444334556


Q ss_pred             EEEEecCCC----EEEEE-EcCCeEEEEECCCceEeeecceeEEeecCCCceEEec-cCCCCeeEEEEeCCCCEEEEEEC
Q 004207          687 QMRFQPRLG----RILAA-AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASH  760 (768)
Q Consensus       687 sl~fsp~~~----~llag-s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~-~H~~~I~sla~spdg~~LaSgs~  760 (768)
                      .++|++++.    +|+++ +..+.|..||+.........   +++.       .+. .+......+++..+|+++++...
T Consensus       176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~---~~~~-------~~~~~~~~~pdGiavD~~GnlyVa~~~  245 (314)
T d1pjxa_         176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK---KVWG-------HIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE---EEEE-------ECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             eeEECCCCCcceeEEEEEeecccceEEeeccCcccccee---eEEE-------EccccccccceeeEEecCCcEEEEEcC
Confidence            789988764    45444 45678888886543222111   1110       111 12233567889999988777777


Q ss_pred             CCcEEEeC
Q 004207          761 DKCVKIWK  768 (768)
Q Consensus       761 DG~V~IWD  768 (768)
                      .+.|.+||
T Consensus       246 ~g~I~~~d  253 (314)
T d1pjxa_         246 SSHIEVFG  253 (314)
T ss_dssp             TTEEEEEC
T ss_pred             CCEEEEEe
Confidence            88888875

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.33  E-value=5.9e-05  Score=76.12  Aligned_cols=155  Identities=12%  Similarity=0.217  Sum_probs=116.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe--ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q 004207          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl--~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~  631 (768)
                      ......++++.++|.++++....+.+.+++.. ++.+.++  ..+......+++.++++++++....+.|++||... +.
T Consensus       112 ~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~  189 (279)
T d1q7fa_         112 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QY  189 (279)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CE
T ss_pred             cccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecCC-ce
Confidence            44567889999999988888878889998864 5666655  34566788999999998888888889999999864 33


Q ss_pred             eEEEee--cCCCCeEEEEEeCCCCeEEEEE-eCCCcEEEEECCCCeeEEEEecC---CCeeEEEEecCCCEEEEEEcCCe
Q 004207          632 SLRTFT--GHSTTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENY  705 (768)
Q Consensus       632 ~~~~~~--~h~~~V~slafsp~g~~lLaSg-s~Dg~I~iWDl~sg~~i~~~~~~---~~i~sl~fsp~~~~llags~Dg~  705 (768)
                       +..+.  +.......|++.++|+ ++++- ..++.|.+|+. +|+.+.++...   .....+++.+++. |+++..++.
T Consensus       190 -~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~-l~V~~~n~~  265 (279)
T d1q7fa_         190 -LRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGS-VVLASKDYR  265 (279)
T ss_dssp             -EEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTE-EEEEETTTE
T ss_pred             -eeeecccccccCCcccccccCCe-EEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCc-EEEEeCCCe
Confidence             44442  3445688999999987 55443 34557999984 58877777542   3578899999864 666778899


Q ss_pred             EEEEECCCc
Q 004207          706 ISILDVETQ  714 (768)
Q Consensus       706 I~IwD~~t~  714 (768)
                      |++|.....
T Consensus       266 v~~fr~~~~  274 (279)
T d1q7fa_         266 LYIYRYVQL  274 (279)
T ss_dssp             EEEEECSCC
T ss_pred             EEEEEeeee
Confidence            999987654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.08  E-value=0.00076  Score=68.52  Aligned_cols=198  Identities=11%  Similarity=0.027  Sum_probs=125.2

Q ss_pred             EEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee
Q 004207          559 ESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (768)
Q Consensus       559 ~sl~fSpd-g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~  637 (768)
                      .+..|++. +.++.+--..+.|..||.++++.. .+. ....+.++++.+++.++++ +.+ .|.++|..+++.......
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence            46678874 445555456789999999987654 332 3456889999998876665 454 588999998774322211


Q ss_pred             cC---CCCeEEEEEeCCCCeEEEEEeC---CCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEE
Q 004207          638 GH---STTVMSLDFHPSKEDLLCSCDN---NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILD  710 (768)
Q Consensus       638 ~h---~~~V~slafsp~g~~lLaSgs~---Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD  710 (768)
                      ..   ...+..+.+.++|..++.+...   .+.-.+|.+..++....+........++|++++..++.+. ..+.|..|+
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~  176 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVP  176 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEee
Confidence            11   2357889999998855544322   2345677777777666665556678899999998776665 467888888


Q ss_pred             CCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          711 VETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       711 ~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      +.......... ..+       ...+....+....+++..+|++.++.-..+.|.+||
T Consensus       177 ~d~~~~~~~~~-~~~-------~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d  226 (295)
T d2ghsa1         177 LDARTGLPTGK-AEV-------FIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD  226 (295)
T ss_dssp             BCTTTCCBSSC-CEE-------EEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred             ecccccccccc-eEE-------EeccCcccccccceEEcCCCCEEeeeeCCCceEEec
Confidence            75432111100 000       011223334567778888887666665666777665

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.08  E-value=0.0013  Score=66.80  Aligned_cols=183  Identities=11%  Similarity=0.002  Sum_probs=119.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc----CCCCEEEEEEcCCCCEEEEEeCC----CcEEEEEC
Q 004207          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE----HTQWITDVRFSPSLSRLATSSAD----RTVRVWDT  626 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~----h~~~V~sl~fspdg~~LaTgs~D----gtIrVWDl  626 (768)
                      ...+.++++.++|.++++ +.+ .|.++|..+++.......    ....++++.+.|+|++.++...+    +.-.+|.+
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeee
Confidence            346889999989877765 444 599999998876543321    12358899999999977765432    34466766


Q ss_pred             CCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC------eeEEEEe---cCCCeeEEEEecCCCEE
Q 004207          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG------SCAGVFK---CQSGATQMRFQPRLGRI  697 (768)
Q Consensus       627 ~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg------~~i~~~~---~~~~i~sl~fsp~~~~l  697 (768)
                      ..++. ..... .-.....++|+++++.++++-+..+.|..|++...      +......   .......+++..+|+..
T Consensus       136 ~~g~~-~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlW  213 (295)
T d2ghsa1         136 AKGKV-TKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW  213 (295)
T ss_dssp             ETTEE-EEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred             cCCcE-EEEee-ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEE
Confidence            65543 22222 23456889999999988888888899999987421      1111111   13446789999998877


Q ss_pred             EEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEe-CCCCEEEEE
Q 004207          698 LAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAS-TVNGMVASA  758 (768)
Q Consensus       698 lags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~s-pdg~~LaSg  758 (768)
                      ++.-..+.|..||... +..      ..+.+          -...+++++|- ++.+.|++.
T Consensus       214 va~~~~g~V~~~dp~G-~~~------~~i~l----------P~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         214 NARWGEGAVDRYDTDG-NHI------ARYEV----------PGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             EEEETTTEEEEECTTC-CEE------EEEEC----------SCSBEEEEEEESTTSCEEEEE
T ss_pred             eeeeCCCceEEecCCC-cEe------eEecC----------CCCceEEEEEeCCCCCEEEEE
Confidence            7777788899999654 322      12221          12358999996 565555443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=9.8e-06  Score=88.82  Aligned_cols=195  Identities=13%  Similarity=0.113  Sum_probs=124.1

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC---CCCEEEEEEcCCCCEEEEEe---------CCCcEEEEECCC
Q 004207          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRFSPSLSRLATSS---------ADRTVRVWDTEN  628 (768)
Q Consensus       561 l~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h---~~~V~sl~fspdg~~LaTgs---------~DgtIrVWDl~t  628 (768)
                      +.|.+++.++.. ..+|.|.+||+.+++....+..+   ...+....|+||+++++...         ..+.+.|||+.+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            358888876654 46788999999887764444332   23567888999999887764         356789999998


Q ss_pred             CCee-EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC--C-----------------CeeEE
Q 004207          629 PDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--S-----------------GATQM  688 (768)
Q Consensus       629 ~~~~-~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~--~-----------------~i~sl  688 (768)
                      +... +.........+....|+|+|+.++++.  ++.|.+.+...+..++.....  .                 .-..+
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~  178 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH  178 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEe--cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceE
Confidence            7641 111222344566789999999887665  567999988777665544321  1                 12467


Q ss_pred             EEecCCCEEEEEEcC-CeEEEEECCCc--e---Eeeec-----------ceeEEeecCCCceEEe-------ccCCCCee
Q 004207          689 RFQPRLGRILAAAIE-NYISILDVETQ--V---CRLKL-----------QTLELWNMTENKTLTL-------SAHDKLVS  744 (768)
Q Consensus       689 ~fsp~~~~llags~D-g~I~IwD~~t~--~---~~~~~-----------~~I~iwd~~~~~~~~l-------~~H~~~I~  744 (768)
                      -|+|+|.+|+....| ..|..|.+...  .   ....+           ..+.++|+..+.....       ......+.
T Consensus       179 ~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~  258 (465)
T d1xfda1         179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYIT  258 (465)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEE
T ss_pred             EECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceee
Confidence            799999999887643 44544443211  0   00111           1577888876543321       12233477


Q ss_pred             EEEEeCCCCEEEEE
Q 004207          745 SLAASTVNGMVASA  758 (768)
Q Consensus       745 sla~spdg~~LaSg  758 (768)
                      .+.|++++++++..
T Consensus       259 ~~~W~~d~~~~~~~  272 (465)
T d1xfda1         259 MVKWATSTKVAVTW  272 (465)
T ss_dssp             EEEESSSSEEEEEE
T ss_pred             eeEEcCCCeEEEEE
Confidence            89999988765544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.03  E-value=0.00018  Score=70.87  Aligned_cols=96  Identities=17%  Similarity=0.169  Sum_probs=65.8

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-CC-----cEEEEECCCCCeeE
Q 004207          562 HFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR-----TVRVWDTENPDYSL  633 (768)
Q Consensus       562 ~fSpd--g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~-Dg-----tIrVWDl~t~~~~~  633 (768)
                      ..+||  |+.+|-.+ ++.|.++|+.+++.. .+..+.+.+...+|||||+.||.... ++     .|.+++..+++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            45788  99887664 467999999988765 45556677899999999999886543 22     37777777665321


Q ss_pred             EE-----eecCCCCeEEEEEeCCCCeEEEEE
Q 004207          634 RT-----FTGHSTTVMSLDFHPSKEDLLCSC  659 (768)
Q Consensus       634 ~~-----~~~h~~~V~slafsp~g~~lLaSg  659 (768)
                      .+     ..........+.|+|+++.++++.
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEE
Confidence            11     111223457788999998777654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=0.00059  Score=74.16  Aligned_cols=162  Identities=13%  Similarity=0.039  Sum_probs=100.3

Q ss_pred             CCeEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCeEEEEe--ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207          556 SKVESCHFSPDGKLLATGG---------HDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs---------~Dg~I~VWdl~t~~~~~tl--~~h~~~V~sl~fspdg~~LaTgs~DgtIrVW  624 (768)
                      ..+....||||+++|+...         ..+.+.|||+.+++.....  ......+....|||||+.||... ++.|.+.
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~  139 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEE
Confidence            3567788999999887764         3567899999987754332  22234456688999999998875 6678888


Q ss_pred             ECCCCCeeEEEeecCCCC-----------------eEEEEEeCCCCeEEEEEeCCCcEE---------------------
Q 004207          625 DTENPDYSLRTFTGHSTT-----------------VMSLDFHPSKEDLLCSCDNNSEIR---------------------  666 (768)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~-----------------V~slafsp~g~~lLaSgs~Dg~I~---------------------  666 (768)
                      +...+.....+..+....                 -.++.|+|||+.+++.--.+..|.                     
T Consensus       140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp  219 (465)
T d1xfda1         140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (465)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecc
Confidence            887655422332222222                 257789999998876654444443                     


Q ss_pred             ------------EEECCCCeeEEEEec-------CCCeeEEEEecCCCEEEEEEc-C---CeEEEEECCCceEee
Q 004207          667 ------------YWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILAAAI-E---NYISILDVETQVCRL  718 (768)
Q Consensus       667 ------------iWDl~sg~~i~~~~~-------~~~i~sl~fsp~~~~llags~-D---g~I~IwD~~t~~~~~  718 (768)
                                  ++|+.++........       ...+..+.|++++..++.... +   ..|.++|..++.+..
T Consensus       220 ~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~  294 (465)
T d1xfda1         220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK  294 (465)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred             ccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEE
Confidence                        344433322111110       112567889998765544432 2   257888888876543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.36  E-value=0.0049  Score=65.08  Aligned_cols=199  Identities=7%  Similarity=-0.006  Sum_probs=122.3

Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEeccCC---------------------------------------CC--EEEEEEcC-
Q 004207          570 LATGGHDKKAVLWCTESFTVKSTLEEHT---------------------------------------QW--ITDVRFSP-  607 (768)
Q Consensus       570 LaSgs~Dg~I~VWdl~t~~~~~tl~~h~---------------------------------------~~--V~sl~fsp-  607 (768)
                      |.||+..|.|+||-+.+++.+..+...+                                       +.  --.+.+.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            6788889999999888887776552100                                       00  01344433 


Q ss_pred             --CCCEEEEEe-CCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeC--CCCeEEEEEeC------C-----------CcE
Q 004207          608 --SLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP--SKEDLLCSCDN------N-----------SEI  665 (768)
Q Consensus       608 --dg~~LaTgs-~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp--~g~~lLaSgs~------D-----------g~I  665 (768)
                        ||++|++.. .+.+|.+.|+++.+............+..+...+  +..++++.+..      |           +.+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence              678887766 5779999999987752222223445567666654  43444433221      1           336


Q ss_pred             EEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCC---------------eEEEEECCCceEe------eecceeE
Q 004207          666 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN---------------YISILDVETQVCR------LKLQTLE  724 (768)
Q Consensus       666 ~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg---------------~I~IwD~~t~~~~------~~~~~I~  724 (768)
                      .++|..+.+....+........+.++++|+++++.+.+.               .+.++++...+..      .....+.
T Consensus       176 t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            788999999988888878888999999999999887532               2444444221100      0111334


Q ss_pred             EeecCC---CceEEeccCCCCeeEEEEeCCCCEEEEEEC-CCcEEEeC
Q 004207          725 LWNMTE---NKTLTLSAHDKLVSSLAASTVNGMVASASH-DKCVKIWK  768 (768)
Q Consensus       725 iwd~~~---~~~~~l~~H~~~I~sla~spdg~~LaSgs~-DG~V~IWD  768 (768)
                      +.|...   .....+..-......+.++|||+++++++. +.+|.|+|
T Consensus       256 VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD  303 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLD  303 (459)
T ss_dssp             EEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEE
T ss_pred             eecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEE
Confidence            445432   122222222334667899999999888774 78888865

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.34  E-value=0.046  Score=53.90  Aligned_cols=160  Identities=8%  Similarity=-0.051  Sum_probs=106.7

Q ss_pred             CCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCee
Q 004207          555 TSKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYS  632 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSg-s~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~La-Tgs~DgtIrVWDl~t~~~~  632 (768)
                      ...|.+|+|....+.|+.+ ..++.|+..++........+......+.+|++..-+..|+ +-...+.|.+.+++.... 
T Consensus        35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-  113 (263)
T d1npea_          35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-  113 (263)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred             CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE-
Confidence            3458889999877766655 4567898888877665555544445689999987555555 445567999999986543 


Q ss_pred             EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc--EEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEE-cCCeEEE
Q 004207          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA-IENYISI  708 (768)
Q Consensus       633 ~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~--I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags-~Dg~I~I  708 (768)
                      ..........+..++++|....++.+-...+.  |.-.++.......... .-.....+++++.++.|+.+. ..+.|..
T Consensus       114 ~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~  193 (263)
T d1npea_         114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC  193 (263)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEE
Confidence            22333334678999999998877776543333  4444665433333222 234567899998888887775 4678888


Q ss_pred             EECCCce
Q 004207          709 LDVETQV  715 (768)
Q Consensus       709 wD~~t~~  715 (768)
                      .|+....
T Consensus       194 ~~~~g~~  200 (263)
T d1npea_         194 LNPAQPG  200 (263)
T ss_dssp             EETTEEE
T ss_pred             EECCCCC
Confidence            8886643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.12  Score=50.73  Aligned_cols=160  Identities=12%  Similarity=0.012  Sum_probs=102.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCe----EEEEeccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECC
Q 004207          554 STSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTE  627 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs-~Dg~I~VWdl~t~~----~~~tl~~h~~~V~sl~fspdg~~LaTg-s~DgtIrVWDl~  627 (768)
                      ....+.+++|.+..+.|+... .++.|...++....    ....+......+.++++.+-+..|+.+ ...++|.+.+++
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            445678999998777766654 45667766664321    122233333456788888755555444 556789999998


Q ss_pred             CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe-CCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEE-cCC
Q 004207          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA-IEN  704 (768)
Q Consensus       628 t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs-~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags-~Dg  704 (768)
                      .... .............|+++|....++++.. ..+.|.-.++........... -.....+++++.++.|+.+. ..+
T Consensus       108 g~~~-~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~  186 (266)
T d1ijqa1         108 GVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  186 (266)
T ss_dssp             SSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CceE-EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcC
Confidence            6553 4444445567899999998777776643 345677777764443333322 34568899999888888775 457


Q ss_pred             eEEEEECCCc
Q 004207          705 YISILDVETQ  714 (768)
Q Consensus       705 ~I~IwD~~t~  714 (768)
                      .|...|+...
T Consensus       187 ~I~~~~~dG~  196 (266)
T d1ijqa1         187 SISSIDVNGG  196 (266)
T ss_dssp             EEEEEETTSC
T ss_pred             EEEEEECCCC
Confidence            8888887654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.12  E-value=0.16  Score=50.75  Aligned_cols=109  Identities=17%  Similarity=0.227  Sum_probs=74.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecC
Q 004207          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH  639 (768)
Q Consensus       560 sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h  639 (768)
                      +.-.+|..+.||.-+ ..++.|||+++.+.++.+.-. ..|.--.|-.+ +.|+-. .+..|+-|+++....+.+.+..|
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~-~~L~lV-T~taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALV-TDNAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSS-SEEEEE-CSSEEEEEESSSSCCCEEEEECC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEecCC-CEEEEE-cCCceEEEcccCCCCchhhhhhc
Confidence            344578888887766 458999999999988887654 45666677654 345544 35679999997655566666665


Q ss_pred             C----CCeEEEEEeCCCCeEEEEEe------CCCcEEEEECCC
Q 004207          640 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINN  672 (768)
Q Consensus       640 ~----~~V~slafsp~g~~lLaSgs------~Dg~I~iWDl~s  672 (768)
                      .    ..|..-..+++.++++++|=      -.|.+.+|.++.
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er  185 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR  185 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc
Confidence            4    35666677777777766551      235566776653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.09  E-value=0.016  Score=61.02  Aligned_cols=202  Identities=11%  Similarity=0.089  Sum_probs=126.7

Q ss_pred             EEEEcC---CCCEEEEEe-CCCcEEEEECCCCeEEEEecc-CCCCEEEEEEcC--CCCEEEEEeCCC-------------
Q 004207          560 SCHFSP---DGKLLATGG-HDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSP--SLSRLATSSADR-------------  619 (768)
Q Consensus       560 sl~fSp---dg~~LaSgs-~Dg~I~VWdl~t~~~~~tl~~-h~~~V~sl~fsp--dg~~LaTgs~Dg-------------  619 (768)
                      .+++..   ||+||++.. .+.+|.+-|+++.++...+.. ....+..++..+  +..|++.++.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455544   788877665 678999999999998765533 334567777654  556777776632             


Q ss_pred             -----cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC--------------------------------
Q 004207          620 -----TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--------------------------------  662 (768)
Q Consensus       620 -----tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D--------------------------------  662 (768)
                           .+.++|.++.+.......+  +....++++++|++++++|...                                
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~--g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G  246 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  246 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             hhcceEEEEEecCCceEEEEeeeC--CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence                 3677888887754444433  4577899999999888877432                                


Q ss_pred             -----CcEEEEECCC---CeeEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCce
Q 004207          663 -----SEIRYWSINN---GSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKT  733 (768)
Q Consensus       663 -----g~I~iWDl~s---g~~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~  733 (768)
                           +.+.+.|.+.   ...++.+........+.++|+|.++++++ .+.++.|+|++......... +   |.. ..+
T Consensus       247 k~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~-~---~~~-~~~  321 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN-A---DPR-SAV  321 (459)
T ss_dssp             CSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC-C----GG-GGE
T ss_pred             CcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhccc-C---Ccc-ccE
Confidence                 2234555443   12334455555667889999999988776 58999999997642211000 0   111 111


Q ss_pred             EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          734 LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       734 ~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ..-....-.....+|+..|.-..|---|..|.-|+
T Consensus       322 ~~e~elglgPLht~fd~~g~aytslfids~v~kw~  356 (459)
T d1fwxa2         322 VAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWN  356 (459)
T ss_dssp             EECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             EeecccCcCccccccCCCceEEEEeeccceEEEEe
Confidence            11112233456778887775444445688887775

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.05  E-value=0.013  Score=56.82  Aligned_cols=95  Identities=13%  Similarity=0.181  Sum_probs=68.2

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC-----cEEEEECCCCeeE
Q 004207          604 RFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCA  676 (768)
Q Consensus       604 ~fspd--g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg-----~I~iWDl~sg~~i  676 (768)
                      ..+|+  |+.++..+ ++.|.+.|+..++  .+.+..+.+.+...+|+|||+.++++...++     .|.++++.+++..
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~--~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGS--TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCC--EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCC--EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            35788  88887664 4568888998776  3556667778899999999998887765443     4777888877665


Q ss_pred             EEEec-------CCCeeEEEEecCCCEEEEEE
Q 004207          677 GVFKC-------QSGATQMRFQPRLGRILAAA  701 (768)
Q Consensus       677 ~~~~~-------~~~i~sl~fsp~~~~llags  701 (768)
                      .....       ........|+|++..|+...
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            43222       12346788999998887654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.83  E-value=0.16  Score=49.71  Aligned_cols=159  Identities=7%  Similarity=-0.039  Sum_probs=102.5

Q ss_pred             CCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC-CcEEEE--ECCCCC
Q 004207          555 TSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVW--DTENPD  630 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~La-Sgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D-gtIrVW--Dl~t~~  630 (768)
                      ...+.+|++..-+..|+ +-...+.|.+.+++.......+......+..++++|...+|+..... +..+||  +++...
T Consensus        78 ~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~  157 (263)
T d1npea_          78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN  157 (263)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred             cccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC
Confidence            34688899987565555 44556789999988655443343344678999999977776655433 333444  555433


Q ss_pred             eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEE
Q 004207          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISIL  709 (768)
Q Consensus       631 ~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~Iw  709 (768)
                      . .......-....+|++++.++.++++-...+.|...|+........+........+++.  +++|+... ..+.|...
T Consensus       158 ~-~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~  234 (263)
T d1npea_         158 R-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAM  234 (263)
T ss_dssp             C-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred             c-eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEE
Confidence            2 23333334567899999888878777677889999999765544444443445567665  45666665 45677777


Q ss_pred             ECCCceE
Q 004207          710 DVETQVC  716 (768)
Q Consensus       710 D~~t~~~  716 (768)
                      |..++..
T Consensus       235 ~~~~g~~  241 (263)
T d1npea_         235 DLAISKE  241 (263)
T ss_dssp             ETTTTEE
T ss_pred             ECCCCcc
Confidence            7766543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.26  Score=48.24  Aligned_cols=158  Identities=8%  Similarity=-0.039  Sum_probs=103.3

Q ss_pred             CCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCe
Q 004207          555 TSKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDY  631 (768)
Q Consensus       555 ~~~I~sl~fSpdg~~LaSg-s~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~--DgtIrVWDl~t~~~  631 (768)
                      -..+.++++...++.|..+ ...++|.+.+++.......+.........++++|...+|+....  .+.|.-.+++....
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~  155 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  155 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce
Confidence            3457788887756655544 55678999999877666555555667899999997666665543  34566666664432


Q ss_pred             eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC---CCeeEEEEecCCCEEEEEE-cCCeEE
Q 004207          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAA-IENYIS  707 (768)
Q Consensus       632 ~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~---~~i~sl~fsp~~~~llags-~Dg~I~  707 (768)
                       .......-....+|++++.++.++++-...+.|...|+....+...+...   .....+++.  +++|+.+. .++.|.
T Consensus       156 -~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~  232 (266)
T d1ijqa1         156 -YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF  232 (266)
T ss_dssp             -EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             -ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEE
Confidence             23333334567899999988888877777889999999755444433332   234566666  34666655 556777


Q ss_pred             EEECCCce
Q 004207          708 ILDVETQV  715 (768)
Q Consensus       708 IwD~~t~~  715 (768)
                      ..+..++.
T Consensus       233 ~~~~~~g~  240 (266)
T d1ijqa1         233 SANRLTGS  240 (266)
T ss_dssp             EEETTTCC
T ss_pred             EEECCCCc
Confidence            77765543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.60  E-value=0.036  Score=56.62  Aligned_cols=118  Identities=8%  Similarity=0.086  Sum_probs=73.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCC-----------cEEEEECCCCeEE--EE-eccCCCCEEEEEEcCCCCEEEEEeCC-CcE
Q 004207          557 KVESCHFSPDGKLLATGGHDK-----------KAVLWCTESFTVK--ST-LEEHTQWITDVRFSPSLSRLATSSAD-RTV  621 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg-----------~I~VWdl~t~~~~--~t-l~~h~~~V~sl~fspdg~~LaTgs~D-gtI  621 (768)
                      ++...+...+|++++.|+.+.           .+.+||..+++-.  .. ...|.......++.+++.+++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            445555566889888887531           3779999876432  12 22333334566788999999988765 589


Q ss_pred             EEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC------CcEEEEECCCCee
Q 004207          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSC  675 (768)
Q Consensus       622 rVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D------g~I~iWDl~sg~~  675 (768)
                      .+||..+..............-.+++..+++. +++.|+.+      ..+.+||..+.+-
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             eEecCccCcccccccccccccccceeeecCCc-eeeeccccccccccceeeeecCCCCce
Confidence            99999876542211111122234566677876 45455432      3689999987653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.34  E-value=0.13  Score=52.82  Aligned_cols=144  Identities=16%  Similarity=0.215  Sum_probs=94.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcC------CCCEEEEEe-CC---CcEEEEECCCCCeeEEE
Q 004207          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP------SLSRLATSS-AD---RTVRVWDTENPDYSLRT  635 (768)
Q Consensus       566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fsp------dg~~LaTgs-~D---gtIrVWDl~t~~~~~~~  635 (768)
                      +..+|+....++-|++||++ |+.+..+.  .+.++.|..-.      ....|++++ .+   .+|.+|.+......+..
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            45567766677679999996 77776664  35566665432      222344444 22   36888888643333333


Q ss_pred             eecC-------CCCeEEEEE--eCC-CCeEEEEEeCCCcEEEEECC---CC----eeEEEEecCCCeeEEEEecCCCEEE
Q 004207          636 FTGH-------STTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKCQSGATQMRFQPRLGRIL  698 (768)
Q Consensus       636 ~~~h-------~~~V~slaf--sp~-g~~lLaSgs~Dg~I~iWDl~---sg----~~i~~~~~~~~i~sl~fsp~~~~ll  698 (768)
                      +...       ...++.+|+  ++. +...+++...+|.+..|.+.   .+    +.++.+.....+..|.+....+.|+
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Ly  195 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLY  195 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEE
Confidence            3221       124677776  554 44456677788999888763   23    4567777788899999999999999


Q ss_pred             EEEcCCeEEEEECC
Q 004207          699 AAAIENYISILDVE  712 (768)
Q Consensus       699 ags~Dg~I~IwD~~  712 (768)
                      .+-.+..|..|+..
T Consensus       196 isEE~~Giw~~~a~  209 (353)
T d1h6la_         196 IAEEDEAIWKFSAE  209 (353)
T ss_dssp             EEETTTEEEEEESS
T ss_pred             EecCccceEEEEec
Confidence            99888877777664

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.30  E-value=0.14  Score=56.31  Aligned_cols=193  Identities=12%  Similarity=0.009  Sum_probs=108.4

Q ss_pred             CCcEEEEECCCCeEEEEeccCC-------------------------------------CCE-EEEEEcCCCCEEEEEeC
Q 004207          576 DKKAVLWCTESFTVKSTLEEHT-------------------------------------QWI-TDVRFSPSLSRLATSSA  617 (768)
Q Consensus       576 Dg~I~VWdl~t~~~~~tl~~h~-------------------------------------~~V-~sl~fspdg~~LaTgs~  617 (768)
                      +|.|+-+|+.+++.+..+....                                     ..+ ...++.+...+++.+..
T Consensus       175 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg  254 (571)
T d2ad6a1         175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG  254 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             cCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecc
Confidence            6889999999999998753211                                     111 12355566555555443


Q ss_pred             ----------------CCcEEEEECCCCCeeEEEeecCC--------CCeEEEEEeCCCC--eEEEEEeCCCcEEEEECC
Q 004207          618 ----------------DRTVRVWDTENPDYSLRTFTGHS--------TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSIN  671 (768)
Q Consensus       618 ----------------DgtIrVWDl~t~~~~~~~~~~h~--------~~V~slafsp~g~--~lLaSgs~Dg~I~iWDl~  671 (768)
                                      ...|...|+++++..-..-..|.        .......+..++.  .+++.++.+|.++++|.+
T Consensus       255 ~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~  334 (571)
T d2ad6a1         255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE  334 (571)
T ss_dssp             CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred             cccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecC
Confidence                            24577778888875322221111        1112222222333  356678889999999999


Q ss_pred             CCeeEEEEecCC----------------------------------------CeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 004207          672 NGSCAGVFKCQS----------------------------------------GATQMRFQPRLGRILAAAIENYISILDV  711 (768)
Q Consensus       672 sg~~i~~~~~~~----------------------------------------~i~sl~fsp~~~~llags~Dg~I~IwD~  711 (768)
                      +|+.+...+...                                        .-...+++|+.+.+++...+....+...
T Consensus       335 tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~  414 (571)
T d2ad6a1         335 NGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPF  414 (571)
T ss_dssp             TCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEEC
T ss_pred             CCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccc
Confidence            998875433210                                        0013678888888877776544332211


Q ss_pred             CC--------------------ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          712 ET--------------------QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       712 ~t--------------------~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                      ..                    .........|..+|+.+++.+-...+.....+=..+..+.+|++|+.||.++.+|
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~D  491 (571)
T d2ad6a1         415 MLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALD  491 (571)
T ss_dssp             CCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             cccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEE
Confidence            10                    0000111257778888888763222222222111223467888899999998775

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.98  E-value=0.47  Score=47.75  Aligned_cols=77  Identities=13%  Similarity=0.138  Sum_probs=51.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCeEEEEeccC-CCCEEEEEEcCCCCEEEEEeCC------CcEEEEE
Q 004207          554 STSKVESCHFSPDGKLLATGGHD-KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSAD------RTVRVWD  625 (768)
Q Consensus       554 H~~~I~sl~fSpdg~~LaSgs~D-g~I~VWdl~t~~~~~tl~~h-~~~V~sl~fspdg~~LaTgs~D------gtIrVWD  625 (768)
                      |.....++++.+++++++.|+.+ ..+.+||..+..-...-... ...-.+++..+|+++++.++.+      ..+.+||
T Consensus        74 ~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd  153 (387)
T d1k3ia3          74 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS  153 (387)
T ss_dssp             CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred             cccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeec
Confidence            33344567788999999988765 57999998876543221111 1122456677889998888753      3689999


Q ss_pred             CCCCC
Q 004207          626 TENPD  630 (768)
Q Consensus       626 l~t~~  630 (768)
                      ..+..
T Consensus       154 ~~~~~  158 (387)
T d1k3ia3         154 PSSKT  158 (387)
T ss_dssp             TTTTE
T ss_pred             CCCCc
Confidence            98754

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.80  E-value=0.27  Score=53.76  Aligned_cols=55  Identities=16%  Similarity=0.152  Sum_probs=41.3

Q ss_pred             CcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEe
Q 004207          663 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR  717 (768)
Q Consensus       663 g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~  717 (768)
                      |.|.-+|+.+++.+..+.......+-.+.-.++.+++++.|+.++.||.++++.+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~l  498 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEE
Confidence            4688889999999888776444332223334678889999999999999998764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.58  E-value=0.36  Score=53.02  Aligned_cols=152  Identities=10%  Similarity=0.059  Sum_probs=88.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCE-EEEEEcC--CCCEEEEEeC------CCcEEEEECCCCCeeEEEee
Q 004207          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI-TDVRFSP--SLSRLATSSA------DRTVRVWDTENPDYSLRTFT  637 (768)
Q Consensus       567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V-~sl~fsp--dg~~LaTgs~------DgtIrVWDl~t~~~~~~~~~  637 (768)
                      ..+|+.++.|+.|.-.|.++++.+..+....... ..+.-.|  -+..++++..      .|.|+-+|+++++..=+...
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t  200 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence            3468888999999999999999988774211100 0111111  1345555543      48899999999986323221


Q ss_pred             cC-------------------------------------CCCeEEEEEeCCCCeEEEEEeC---------------CCcE
Q 004207          638 GH-------------------------------------STTVMSLDFHPSKEDLLCSCDN---------------NSEI  665 (768)
Q Consensus       638 ~h-------------------------------------~~~V~slafsp~g~~lLaSgs~---------------Dg~I  665 (768)
                      ..                                     ...-..+++++..+.+++..+.               ...|
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~si  280 (596)
T d1w6sa_         201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI  280 (596)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred             cCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccc
Confidence            10                                     0111234566665544432211               2357


Q ss_pred             EEEECCCCeeEEEEec-CCC---------eeEEEE-ecCCC---EEEEEEcCCeEEEEECCCceEee
Q 004207          666 RYWSINNGSCAGVFKC-QSG---------ATQMRF-QPRLG---RILAAAIENYISILDVETQVCRL  718 (768)
Q Consensus       666 ~iWDl~sg~~i~~~~~-~~~---------i~sl~f-sp~~~---~llags~Dg~I~IwD~~t~~~~~  718 (768)
                      .-.|+++|+.+..+.. +..         ...+.+ ..++.   .++....+|.+.++|..+++.+.
T Consensus       281 vAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~  347 (596)
T d1w6sa_         281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (596)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceee
Confidence            7889999999887764 111         111222 22332   36667778899999988886653

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.55  E-value=0.17  Score=55.22  Aligned_cols=142  Identities=8%  Similarity=-0.009  Sum_probs=89.7

Q ss_pred             CcEEEEECCCCeEEEEeccCCCCEE---------EEEEcCCC---CEEEEEeCCCcEEEEECCCCCeeEEEeecCCC---
Q 004207          577 KKAVLWCTESFTVKSTLEEHTQWIT---------DVRFSPSL---SRLATSSADRTVRVWDTENPDYSLRTFTGHST---  641 (768)
Q Consensus       577 g~I~VWdl~t~~~~~tl~~h~~~V~---------sl~fspdg---~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~---  641 (768)
                      ..|...|+++++.+..+......+.         -+....++   ..++.++.+|.+.++|.++++...........   
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            3577779999998876643222111         11122233   35777888999999999988753322111100   


Q ss_pred             --------------------------------CeEEEEEeCCCCeEEEEEeC----------------------------
Q 004207          642 --------------------------------TVMSLDFHPSKEDLLCSCDN----------------------------  661 (768)
Q Consensus       642 --------------------------------~V~slafsp~g~~lLaSgs~----------------------------  661 (768)
                                                      .-...+++|+...+++....                            
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                            01134566665544432211                            


Q ss_pred             -------CCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEee
Q 004207          662 -------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL  718 (768)
Q Consensus       662 -------Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~  718 (768)
                             .|.|.-||+.+++.+..+........-.+.-.++.+++++.|+.++.||.++++.+.
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW  493 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW  493 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeE
Confidence                   256888999999999888765554433344457788899999999999999987653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.50  E-value=0.65  Score=48.38  Aligned_cols=102  Identities=9%  Similarity=0.017  Sum_probs=65.9

Q ss_pred             eEEEEEcCCCCEEEEE-eCCC----cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC--------------
Q 004207          558 VESCHFSPDGKLLATG-GHDK----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------------  618 (768)
Q Consensus       558 I~sl~fSpdg~~LaSg-s~Dg----~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D--------------  618 (768)
                      +..+++|||++++|.+ +.+|    .|+++|+.+++.+...... .....++|.+|+..|+....|              
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~-~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc-ccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            4556789999988754 3333    6999999999876432111 123568899999988765543              


Q ss_pred             --CcEEEEECCCCCee-EEEeecC--CCCeEEEEEeCCCCeEEEEEe
Q 004207          619 --RTVRVWDTENPDYS-LRTFTGH--STTVMSLDFHPSKEDLLCSCD  660 (768)
Q Consensus       619 --gtIrVWDl~t~~~~-~~~~~~h--~~~V~slafsp~g~~lLaSgs  660 (768)
                        ..|..|.+.+.... ...+...  ...+..+..+.+++.++++..
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~  252 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEee
Confidence              25778888765321 2333332  234667778889888776543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.38  E-value=1.1  Score=42.01  Aligned_cols=195  Identities=9%  Similarity=0.071  Sum_probs=109.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEE-cCCCCEEEEE-e-----CCCcEEEEECCCCCeeEEEeecC
Q 004207          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SPSLSRLATS-S-----ADRTVRVWDTENPDYSLRTFTGH  639 (768)
Q Consensus       567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~f-spdg~~LaTg-s-----~DgtIrVWDl~t~~~~~~~~~~h  639 (768)
                      .++|+++...|.|.++-+..++.+...+   .+|..... .+.-.++..+ .     .-..|++.++..+.. ...+...
T Consensus        26 d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GE-E~~i~sp  101 (313)
T d2hu7a1          26 DKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGE-EQRLEAV  101 (313)
T ss_dssp             TEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTC-EEECTTS
T ss_pred             CcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCe-eeEecCC
Confidence            3477888789999999888777664332   33322211 1111122111 1     112355555543322 1222222


Q ss_pred             C-CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----------CCCeeEEEE-ecCCCEEEEEEc-CCeE
Q 004207          640 S-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----------QSGATQMRF-QPRLGRILAAAI-ENYI  706 (768)
Q Consensus       640 ~-~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~----------~~~i~sl~f-sp~~~~llags~-Dg~I  706 (768)
                      . -.|.+++.  +++.++++|+....+.+|-++.|+.......          ...|..+.| .+....++++.- .|.+
T Consensus       102 k~vRI~S~~y--ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~l  179 (313)
T d2hu7a1         102 KPMRILSGVD--TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL  179 (313)
T ss_dssp             CSBEEEEEEE--CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEE
T ss_pred             ceEEEEEeee--cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCE
Confidence            1 34455544  5677888998888899998888775443321          223444444 333334666665 8889


Q ss_pred             EEEECCCceEeeecc----------------eeEEeecCCCceEEecc--------CCCCeeEEEEeCCCCEEEEEECCC
Q 004207          707 SILDVETQVCRLKLQ----------------TLELWNMTENKTLTLSA--------HDKLVSSLAASTVNGMVASASHDK  762 (768)
Q Consensus       707 ~IwD~~t~~~~~~~~----------------~I~iwd~~~~~~~~l~~--------H~~~I~sla~spdg~~LaSgs~DG  762 (768)
                      +|++...+.......                ....+|+.+++...+.-        ..-.|+-+.+.|++++++.+-.||
T Consensus       180 ri~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG  259 (313)
T d2hu7a1         180 RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG  259 (313)
T ss_dssp             EEECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred             EEecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCC
Confidence            999887654322111                11134666555443221        123466677999999989999999


Q ss_pred             cEEEe
Q 004207          763 CVKIW  767 (768)
Q Consensus       763 ~V~IW  767 (768)
                      .-++|
T Consensus       260 ~s~lF  264 (313)
T d2hu7a1         260 RSAVF  264 (313)
T ss_dssp             EEEEE
T ss_pred             chhee
Confidence            87776

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.29  E-value=0.94  Score=45.84  Aligned_cols=156  Identities=13%  Similarity=0.070  Sum_probs=91.1

Q ss_pred             eEEEEEcCCCCEEEEEeC------------CCcEEEEECCCCeEEE---EeccCC-----CCEEEEEE--cCCCC-EEEE
Q 004207          558 VESCHFSPDGKLLATGGH------------DKKAVLWCTESFTVKS---TLEEHT-----QWITDVRF--SPSLS-RLAT  614 (768)
Q Consensus       558 I~sl~fSpdg~~LaSgs~------------Dg~I~VWdl~t~~~~~---tl~~h~-----~~V~sl~f--spdg~-~LaT  614 (768)
                      ..+|...|||..+++++.            .|.|.++|+++.+...   .+.+..     -....+.+  .+++. +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            446777888877766542            3889999987643221   111110     12233333  44555 4555


Q ss_pred             Ee---CCCcEEEEECCCCCeeEE---Eee-cCCCCeEEEEEeCCCCeEEEEEeC---------------CCcEEEEECCC
Q 004207          615 SS---ADRTVRVWDTENPDYSLR---TFT-GHSTTVMSLDFHPSKEDLLCSCDN---------------NSEIRYWSINN  672 (768)
Q Consensus       615 gs---~DgtIrVWDl~t~~~~~~---~~~-~h~~~V~slafsp~g~~lLaSgs~---------------Dg~I~iWDl~s  672 (768)
                      ..   ...+|.||++......+.   ++. .......+|++..++. +++|-..               -+...+|....
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            43   356788998865443222   222 1224578899888875 5556311               12334444444


Q ss_pred             CeeEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCc
Q 004207          673 GSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQ  714 (768)
Q Consensus       673 g~~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~  714 (768)
                      +++......-.....++++|++++|+++. ..+.|++|++...
T Consensus       196 ~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         196 NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            44433344456788999999998877766 5788999988754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.92  E-value=0.66  Score=50.37  Aligned_cols=152  Identities=14%  Similarity=0.131  Sum_probs=86.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCC-EEEEEEcC--CCCEEEEEeC------CCcEEEEECCCCCeeEEEee
Q 004207          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSP--SLSRLATSSA------DRTVRVWDTENPDYSLRTFT  637 (768)
Q Consensus       567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~-V~sl~fsp--dg~~LaTgs~------DgtIrVWDl~t~~~~~~~~~  637 (768)
                      +..++.+..|+.|...|..+++.+.....+... ...+.-.|  ....++.+..      .|.|+-+|.++++..=+...
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence            456888889999999999999998776432211 11111111  1233444332      36799999999886333221


Q ss_pred             cC-----------------------------CCCe-EEEEEeCCCCeEEEEEeC------------------CCcEEEEE
Q 004207          638 GH-----------------------------STTV-MSLDFHPSKEDLLCSCDN------------------NSEIRYWS  669 (768)
Q Consensus       638 ~h-----------------------------~~~V-~slafsp~g~~lLaSgs~------------------Dg~I~iWD  669 (768)
                      ..                             ...+ ..+++.+....+++..+.                  ...|.-.|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld  276 (560)
T d1kv9a2         197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (560)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence            10                             1111 224566665544432210                  23577789


Q ss_pred             CCCCeeEEEEec-CCC---------eeEEEEecCCC---EEEEEEcCCeEEEEECCCceEee
Q 004207          670 INNGSCAGVFKC-QSG---------ATQMRFQPRLG---RILAAAIENYISILDVETQVCRL  718 (768)
Q Consensus       670 l~sg~~i~~~~~-~~~---------i~sl~fsp~~~---~llags~Dg~I~IwD~~t~~~~~  718 (768)
                      +++++.+..+.. ++.         ..-+.+..++.   .++.+..+|.++++|..+++.+.
T Consensus       277 ~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~  338 (560)
T d1kv9a2         277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLIS  338 (560)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             CCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccc
Confidence            999998877654 111         11122233332   35566788899999988887653

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.69  E-value=2.3  Score=42.02  Aligned_cols=150  Identities=9%  Similarity=0.171  Sum_probs=93.5

Q ss_pred             CCeEEEEEcCCCCEEEEEe---C----CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC---CCEEEEEeC---CCcEE
Q 004207          556 SKVESCHFSPDGKLLATGG---H----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSA---DRTVR  622 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs---~----Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd---g~~LaTgs~---DgtIr  622 (768)
                      ..|..-..+++.+|++..+   .    .|.+.+|..+. +.-..+++|.+....+.+.-+   ...|+.+..   .+.++
T Consensus       148 ~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLh  226 (327)
T d1utca2         148 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH  226 (327)
T ss_dssp             CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEE
T ss_pred             ceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEE
Confidence            4577778888899866442   2    35678999875 555678888765555544322   123333322   35889


Q ss_pred             EEECCCCC---e-----eEEEee---cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEE
Q 004207          623 VWDTENPD---Y-----SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF  690 (768)
Q Consensus       623 VWDl~t~~---~-----~~~~~~---~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~f  690 (768)
                      |-++....   .     .+..+.   .-.+...++..++.-+ +++.-+.-|.|++||++++.++..-+. ...|...+-
T Consensus       227 IiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kyg-iiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~  305 (327)
T d1utca2         227 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP  305 (327)
T ss_dssp             EEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             EEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCC-EEEEEecCcEEEEEEcccccEEEEeecCCCceEEecc
Confidence            99886522   1     111111   1234566788887655 666777899999999999999887664 344544444


Q ss_pred             ecCCCEEEEEEcCCeEE
Q 004207          691 QPRLGRILAAAIENYIS  707 (768)
Q Consensus       691 sp~~~~llags~Dg~I~  707 (768)
                      +...+-+++...+|.|.
T Consensus       306 ~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         306 HEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             ETTTTEEEEEETTSEEE
T ss_pred             CCCCceEEEECCCCeEE
Confidence            55545566666666654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.56  E-value=0.69  Score=47.72  Aligned_cols=135  Identities=17%  Similarity=0.146  Sum_probs=85.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCC-----------CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t-----------~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD  625 (768)
                      ...-+++++...+|+.|+.++ ++|..++.           ........  -..|..++|+.+  .|+.. .++.+.+++
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVS-TRNALYSLD  111 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence            466788888888898888875 66665321           11111111  135889999855  45554 456688888


Q ss_pred             CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEE------EecCCCeeEEEEecCCCEEEE
Q 004207          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV------FKCQSGATQMRFQPRLGRILA  699 (768)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~------~~~~~~i~sl~fsp~~~~lla  699 (768)
                      ...-.. ......-..++..+.++|.   .++.+..++.+.++++.++.....      +.....+.+++|++.+..+++
T Consensus       112 ~~~l~~-~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~  187 (381)
T d1xipa_         112 LEELSE-FRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFA  187 (381)
T ss_dssp             SSSTTC-EEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEE
T ss_pred             eecccc-ccccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEE
Confidence            876443 3333334567888988875   344666789999999988754322      222456777777776666666


Q ss_pred             EE
Q 004207          700 AA  701 (768)
Q Consensus       700 gs  701 (768)
                      +.
T Consensus       188 ~~  189 (381)
T d1xipa_         188 WR  189 (381)
T ss_dssp             EE
T ss_pred             eC
Confidence            53

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.34  E-value=2.4  Score=42.54  Aligned_cols=139  Identities=11%  Similarity=0.031  Sum_probs=86.9

Q ss_pred             cCCCC-EEEEEe---CCCcEEEEECCCC--eEE--EEecc-CCCCEEEEEEcCCCCEEEEEeC---------------CC
Q 004207          564 SPDGK-LLATGG---HDKKAVLWCTESF--TVK--STLEE-HTQWITDVRFSPSLSRLATSSA---------------DR  619 (768)
Q Consensus       564 Spdg~-~LaSgs---~Dg~I~VWdl~t~--~~~--~tl~~-h~~~V~sl~fspdg~~LaTgs~---------------Dg  619 (768)
                      ..+|. +|++..   ...+|-||++...  +..  .++.. .....++|++..++.+++|-..               -+
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~  186 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA  186 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence            44565 355553   3457888876432  222  22322 2245789999999888888321               12


Q ss_pred             cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe---eEEEEecCCCeeEEEEecCCCE
Q 004207          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGR  696 (768)
Q Consensus       620 tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~---~i~~~~~~~~i~sl~fsp~~~~  696 (768)
                      +..||..+.++.  ......-.....|+++|+++.++++-...+.|++|++....   ....+......-.+.+.+.++.
T Consensus       187 ~g~v~~~~~~~~--~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~  264 (340)
T d1v04a_         187 WSFVTYYSPNDV--RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGD  264 (340)
T ss_dssp             CEEEEEECSSCE--EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCC
T ss_pred             ceeEEEEcCCce--EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCE
Confidence            345555554443  22222335689999999999999888889999999987433   2233344566778888876666


Q ss_pred             EEEEEcCC
Q 004207          697 ILAAAIEN  704 (768)
Q Consensus       697 llags~Dg  704 (768)
                      +++++...
T Consensus       265 lwva~~p~  272 (340)
T d1v04a_         265 LWVGCHPN  272 (340)
T ss_dssp             EEEEEESC
T ss_pred             EEEEECCc
Confidence            66666544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.15  E-value=0.42  Score=52.12  Aligned_cols=42  Identities=5%  Similarity=0.023  Sum_probs=33.1

Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEecCCCeeE--EEEecCCCE
Q 004207          655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ--MRFQPRLGR  696 (768)
Q Consensus       655 lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~s--l~fsp~~~~  696 (768)
                      ++++|+.|+.++.||.++|+.+..+.....+..  +.|..+|+.
T Consensus       490 lVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         490 VVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             EEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            566799999999999999999999987555433  566666664

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.53  E-value=0.46  Score=51.83  Aligned_cols=57  Identities=7%  Similarity=-0.023  Sum_probs=43.1

Q ss_pred             CcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207          663 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK  719 (768)
Q Consensus       663 g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~  719 (768)
                      |.|.-||+.+++.+..+....+...=...-.++.+++++.|+.++.||.++++.+..
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~  513 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE  513 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEE
Confidence            357788999999998887655433323344678899999999999999999987543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.03  E-value=1.2  Score=48.77  Aligned_cols=112  Identities=9%  Similarity=0.064  Sum_probs=68.6

Q ss_pred             CCCEEEEEeCCCcEEEEEC-CCCeEEEEeccCCC----------C-EEEEEEcCC----CCEEEEEeCCCcEEEEECCCC
Q 004207          566 DGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQ----------W-ITDVRFSPS----LSRLATSSADRTVRVWDTENP  629 (768)
Q Consensus       566 dg~~LaSgs~Dg~I~VWdl-~t~~~~~tl~~h~~----------~-V~sl~fspd----g~~LaTgs~DgtIrVWDl~t~  629 (768)
                      +|.++++++.++.|...|. ++++.+..+.....          . -..+++.++    ..+|+.++.|+.|.-.|.+++
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            5655555566678888886 58999987642110          0 123445432    347888999999999999999


Q ss_pred             CeeEEEeecC--C-CCeE-EEEEeCCCCeEEEEEe------CCCcEEEEECCCCeeEEEEe
Q 004207          630 DYSLRTFTGH--S-TTVM-SLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFK  680 (768)
Q Consensus       630 ~~~~~~~~~h--~-~~V~-slafsp~g~~lLaSgs------~Dg~I~iWDl~sg~~i~~~~  680 (768)
                      +.+-..-.+.  . ..++ .-.+. + . .++++.      ..|.|+-||+++|+.+..+.
T Consensus       142 ~~~w~~~~~d~~~~~~~t~~P~v~-~-~-~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         142 ETVWKVENSDIKVGSTLTIAPYVV-K-D-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-T-T-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             ceeccccccccccccccccCCcEE-C-C-eEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            8643332211  1 1111 11122 2 2 333443      24889999999999998775

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.87  E-value=0.61  Score=50.89  Aligned_cols=58  Identities=10%  Similarity=0.003  Sum_probs=46.0

Q ss_pred             CCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207          662 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK  719 (768)
Q Consensus       662 Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~  719 (768)
                      .|.|.-+|+.+++++..+....++..-.++..++.+++++.|+.++.||.++++.+.+
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~  522 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK  522 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEE
Confidence            4678889999999998888666554434455678889999999999999999987543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.00  E-value=5.7  Score=41.27  Aligned_cols=53  Identities=21%  Similarity=0.263  Sum_probs=38.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE--ec------cCCCCEEEEEEcCC
Q 004207          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LE------EHTQWITDVRFSPS  608 (768)
Q Consensus       556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~t--l~------~h~~~V~sl~fspd  608 (768)
                      ..-++|+|.|||++|++--.+|+|++++..+++....  +.      .-......|+|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4577999999999888775579999998777654322  21      11245789999995

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.73  E-value=0.044  Score=43.13  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=28.6

Q ss_pred             HhhHHHHHHHHHhcCChHHHHHHHHHhcCCCC
Q 004207            9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVST   40 (768)
Q Consensus         9 ~~~L~~yiydyl~k~~~~~~A~~~~~e~~~~~   40 (768)
                      ++-||.-|++||..+|+.++|.+|.+|+.++.
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~   38 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDM   38 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCC
Confidence            34699999999999999999999999998763

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.46  E-value=1.6  Score=45.25  Aligned_cols=61  Identities=8%  Similarity=0.055  Sum_probs=43.7

Q ss_pred             eEEEEEeCCCCeEEEEEeCCC----cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcC
Q 004207          643 VMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE  703 (768)
Q Consensus       643 V~slafsp~g~~lLaSgs~Dg----~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~D  703 (768)
                      +..++++|+++.++++-+.+|    .|+++|+.+++.+...-.......++|.+++..|+....+
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~  191 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYP  191 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEec
Confidence            445678999998887766555    6999999999876533222334668899998888766543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.56  E-value=4.9  Score=43.22  Aligned_cols=187  Identities=12%  Similarity=0.042  Sum_probs=89.0

Q ss_pred             cEEEEECCCCeEEEEecc--CCCC---------EEEEEEcCCC--CEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeE
Q 004207          578 KAVLWCTESFTVKSTLEE--HTQW---------ITDVRFSPSL--SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM  644 (768)
Q Consensus       578 ~I~VWdl~t~~~~~tl~~--h~~~---------V~sl~fspdg--~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~  644 (768)
                      .|...|.++++....+..  |.-.         +..+...+..  ..++..+.++.++++|.++++. +.........+.
T Consensus       292 SvvAld~~tG~~~W~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~-i~~~~~~~~~~~  370 (582)
T d1flga_         292 GQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL-QNAFPFVDNITW  370 (582)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCE-EEEEESSSCCCS
T ss_pred             eeEEecccchhhhhcccccccccccccccccccccccccccccccceeEeecccccEEeecccCCcc-cccccccCcccc
Confidence            477778889988876643  2221         1122222221  2566778899999999998875 333332222232


Q ss_pred             EEEEeCCCCeEEEEEeCCCcEEEEEC---CCCeeEEEEe---cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEe-
Q 004207          645 SLDFHPSKEDLLCSCDNNSEIRYWSI---NNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR-  717 (768)
Q Consensus       645 slafsp~g~~lLaSgs~Dg~I~iWDl---~sg~~i~~~~---~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~-  717 (768)
                      ...........+  .. ++.......   ..........   ........+++|+.+.+++...+....++........ 
T Consensus       371 ~~~~d~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g  447 (582)
T d1flga_         371 ASHIDLKTGRPV--ER-EGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKG  447 (582)
T ss_dssp             EEEECTTTCCEE--EC-TTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTT
T ss_pred             ccccccccccce--ec-cccccccccccccccceEEECCCccCCcccccceecCCCCceeeecccccccccccccccccc
Confidence            222222211111  00 111000000   0011111111   1122345677777776666665544444332211000 


Q ss_pred             ---------------eecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207          718 ---------------LKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  768 (768)
Q Consensus       718 ---------------~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD  768 (768)
                                     .....+..+|+.++++.--.....++..-..+..+.+|++|+.||.++.||
T Consensus       448 ~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~D  513 (582)
T d1flga_         448 SAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFD  513 (582)
T ss_dssp             SCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred             ccccccCccccccccCCCCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEE
Confidence                           001246667777776662222222222222344578888999999999876

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.05  E-value=8.7  Score=39.76  Aligned_cols=67  Identities=18%  Similarity=0.248  Sum_probs=44.5

Q ss_pred             EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---------CCCeeEEEEecC---CCEEEEE
Q 004207          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---------QSGATQMRFQPR---LGRILAA  700 (768)
Q Consensus       633 ~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---------~~~i~sl~fsp~---~~~llag  700 (768)
                      +..+...-...++|+|.|+++ +|++--.+|.|++++..++........         ......|+|+|+   ..+++..
T Consensus        19 ~~~ia~~L~~P~~la~~pdg~-llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvs   97 (450)
T d1crua_          19 KKVILSNLNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (450)
T ss_dssp             EEEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             EEEEECCCCCceEEEEeCCCe-EEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEE
Confidence            444444446788999999986 665554579999999887765443321         345678999985   3444443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.31  E-value=13  Score=34.50  Aligned_cols=107  Identities=10%  Similarity=0.035  Sum_probs=46.6

Q ss_pred             CCCEEEEEeC---------CCcEEEEECCCCeEEEEe--ccCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC
Q 004207          566 DGKLLATGGH---------DKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENP  629 (768)
Q Consensus       566 dg~~LaSgs~---------Dg~I~VWdl~t~~~~~tl--~~h~~~V~sl~fspdg~~LaTgs~Dg-----tIrVWDl~t~  629 (768)
                      ++++++.|+.         -..+.+||..+.+....-  ......-.++.+  +++.++.++.++     .+..||..+.
T Consensus        50 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~  127 (288)
T d1zgka1          50 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  127 (288)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceecccc--ceeeEEecceecccccceeeeeccccC
Confidence            4556665542         135778887765443211  111111122222  455555554433     3455666654


Q ss_pred             CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEECCCCeeE
Q 004207          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCA  676 (768)
Q Consensus       630 ~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-----g~I~iWDl~sg~~i  676 (768)
                      .............-.++....  ..+++.|+.+     ..+..||..+.+..
T Consensus       128 ~~~~~~~~~~~r~~~~~~~~~--~~~~~~GG~~~~~~~~~~~~~d~~~~~~~  177 (288)
T d1zgka1         128 EWHLVAPMLTRRIGVGVAVLN--RLLYAVGGFDGTNRLNSAECYYPERNEWR  177 (288)
T ss_dssp             EEEECCCCSSCCBSCEEEEET--TEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred             ccccccccccccccceeeeee--ecceEecCcccccccceEEEeeccccccc
Confidence            321111111111111222222  3455555443     45778888765543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.30  E-value=11  Score=38.11  Aligned_cols=94  Identities=9%  Similarity=0.040  Sum_probs=60.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE--
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR--  634 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~--  634 (768)
                      .|..++|+.|  .|++. .++.+.+++............-..++..+.++|.  .++....++.+.++++..+.....  
T Consensus        88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeeCC--EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccC
Confidence            5888999744  45554 4567888887765444444444567888998875  566777899999999987653111  


Q ss_pred             ---EeecCCCCeEEEEEeCCCCeEE
Q 004207          635 ---TFTGHSTTVMSLDFHPSKEDLL  656 (768)
Q Consensus       635 ---~~~~h~~~V~slafsp~g~~lL  656 (768)
                         .+. -.+.+.+++|++.+..++
T Consensus       163 ~v~~~~-~~~~~~~v~ws~kgkq~v  186 (381)
T d1xipa_         163 NVTSFD-VTNSQLAVLLKDRSFQSF  186 (381)
T ss_dssp             SEEEEE-ECSSEEEEEETTSCEEEE
T ss_pred             CcceEE-ecCCceEEEEeCCcEEEE
Confidence               111 124567777766655443

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=80.87  E-value=22  Score=33.00  Aligned_cols=138  Identities=15%  Similarity=0.193  Sum_probs=77.1

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCCCCEEEE--------EE-cCCCCEEEEEeC-CCcEEEE
Q 004207          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDV--------RF-SPSLSRLATSSA-DRTVRVW  624 (768)
Q Consensus       557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~--tl~~h~~~V~sl--------~f-spdg~~LaTgs~-DgtIrVW  624 (768)
                      .|.++++. |.+.+++|+....+.+|-++.+++..  .+... +.|++|        .| .++..-|+++.. .|.++|+
T Consensus       105 RI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpF-sFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~  182 (313)
T d2hu7a1         105 RILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGF-GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF  182 (313)
T ss_dssp             EEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSC-EEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEE
T ss_pred             EEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCc-ceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEe
Confidence            45666653 45577788888888999888876543  33221 234433        32 333333555555 6666666


Q ss_pred             ECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe----CCCcEEEEECCCCeeEEEE-ec-------CCCeeEEEEec
Q 004207          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSCAGVF-KC-------QSGATQMRFQP  692 (768)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs----~Dg~I~iWDl~sg~~i~~~-~~-------~~~i~sl~fsp  692 (768)
                      +...+.            ++.....+..+ + +++-    +..-| .+|+++++..+.- ..       ...|..+-+.|
T Consensus       183 tpkeGS------------~~~ay~~~gnK-V-~sdyEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~P  247 (313)
T d2hu7a1         183 DSGEGS------------FSSASISPGMK-V-TAGLETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLP  247 (313)
T ss_dssp             CCSSEE------------EEEEEECTTSC-E-EEEEEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEEEEECT
T ss_pred             cCCCCc------------ccceeEccCce-e-eeccCCCCceEEE-EEecccCceeeeecCcccceeecceEEEeeeeCC
Confidence            665544            33333333322 2 1221    11123 4577766543321 11       23355677899


Q ss_pred             CCCEEEEEEcCCeEEEEEC
Q 004207          693 RLGRILAAAIENYISILDV  711 (768)
Q Consensus       693 ~~~~llags~Dg~I~IwD~  711 (768)
                      ++..++.+-.||.-.+|+-
T Consensus       248 dd~L~iiakrdG~s~lF~n  266 (313)
T d2hu7a1         248 DGRLAVVARREGRSAVFID  266 (313)
T ss_dssp             TSCEEEEEEETTEEEEEET
T ss_pred             CCcEEEEEecCCchheeec
Confidence            9888899999999888874