Citrus Sinensis ID: 004208
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 768 | 2.2.26 [Sep-21-2011] | |||||||
| Q6DN12 | 878 | Multiple C2 and transmemb | yes | no | 0.480 | 0.420 | 0.239 | 5e-14 | |
| Q5RJH2 | 878 | Multiple C2 and transmemb | yes | no | 0.498 | 0.436 | 0.226 | 9e-12 | |
| Q3U7R1 | 1092 | Extended synaptotagmin-1 | no | no | 0.449 | 0.315 | 0.227 | 2e-10 | |
| Q6DN14 | 999 | Multiple C2 and transmemb | no | no | 0.484 | 0.372 | 0.218 | 3e-10 | |
| Q9BSJ8 | 1104 | Extended synaptotagmin-1 | no | no | 0.595 | 0.413 | 0.221 | 6e-10 | |
| Q5RAG2 | 1104 | Extended synaptotagmin-1 | no | no | 0.457 | 0.317 | 0.226 | 2e-09 | |
| Q9Z1X1 | 1088 | Extended synaptotagmin-1 | no | no | 0.455 | 0.321 | 0.228 | 2e-09 | |
| C9J798 | 803 | Putative Ras GTPase-activ | no | no | 0.277 | 0.265 | 0.247 | 1e-08 | |
| O43374 | 803 | Ras GTPase-activating pro | no | no | 0.277 | 0.265 | 0.247 | 1e-08 | |
| O43581 | 403 | Synaptotagmin-7 OS=Homo s | no | no | 0.287 | 0.548 | 0.238 | 2e-08 |
| >sp|Q6DN12|MCTP2_HUMAN Multiple C2 and transmembrane domain-containing protein 2 OS=Homo sapiens GN=MCTP2 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 80.5 bits (197), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 108/451 (23%), Positives = 191/451 (42%), Gaps = 82/451 (18%)
Query: 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKER 96
L + + R+L V GT DPYV+ K+ YK I K LNP W+++
Sbjct: 195 LLTIHLKEGRNLVVRDRCGTSDPYVKFKLNGKTLYKSKVI--YKNLNPVWDEIVVLP--- 249
Query: 97 LQAISVELLVK--DKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARG 154
+Q++ +L VK D+ + DF+G + + D+ + L E + G
Sbjct: 250 IQSLDQKLRVKVYDRDLTTSDFMGSAFVILSDLELNRTTEHILKLE----DPNSLEDDMG 305
Query: 155 ELMFAIWFGTQADEAFSSAWHSDTAVVSGEN--IMNCR-SKVYVSPKLW--YLRVNVIEA 209
++ + + + W + + + ++ I N R S+ +LW + + ++E
Sbjct: 306 VIVLNLNLVVKQGDFKRHRWSNRKRLSASKSSLIRNLRLSESLKKNQLWNGIISITLLEG 365
Query: 210 QDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPL-ILTV 268
+++ E+F++ G+ K+ K + NP W E F F D + IL +
Sbjct: 366 KNVSGGSMT---EMFVQLKLGDQRYKSKTLCK-SANPQWQEQFDF---HYFSDRMGILDI 418
Query: 269 EDKLGDNK--EECLGRL-----VLPLSKAGKRFLPL--------------PAAAIWYN-- 305
E DNK EE LG LPL +A LPL P A + +
Sbjct: 419 EVWGKDNKKHEERLGTCKVDISALPLKQANCLELPLDSCLGALLMLVTLTPCAGVSVSDL 478
Query: 306 LERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVLEL 365
+A+ E+K + R CL+ SL D++ +G+L++
Sbjct: 479 CVCPLADLSERKQI--TQRYCLQNSL--------------KDVKD---------VGILQV 513
Query: 366 GILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTV 425
+L A +LL + D G +D +C+ + N ++T TV + +P+WN+ +T+ + D + V
Sbjct: 514 KVLKAADLL---AADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDV 570
Query: 426 ITLVVFDNCHLHPGGAKDSRIGKVRIRLSTL 456
+ + VFD G +GKV I L ++
Sbjct: 571 LEVTVFD----EDGDKPPDFLGKVAIPLLSI 597
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Homo sapiens (taxid: 9606) |
| >sp|Q5RJH2|MCTP2_MOUSE Multiple C2 and transmembrane domain-containing protein 2 OS=Mus musculus GN=Mctp2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 72.8 bits (177), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 99/437 (22%), Positives = 182/437 (41%), Gaps = 54/437 (12%)
Query: 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKER 96
L + + R+L V GT DPYV+ K+ YK I K LNP W+++
Sbjct: 195 LLTIHLKEGRNLVVRDRCGTSDPYVKFKLNGKTLYKSKVI--YKNLNPIWDEIVVLP--- 249
Query: 97 LQAISVELLVK--DKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARG 154
+Q++ +L VK D+ + DF+G + + D+ + L E + G
Sbjct: 250 IQSLDQKLRVKVYDRDLTKSDFMGSAFVVLRDLELNRTTEHILKLE----DPNSLEDDMG 305
Query: 155 ELMFAIWFGTQADEAFSSAWHSDTAVVSGEN--IMNCR-SKVYVSPKLW--YLRVNVIEA 209
++ + + + W + + + ++ I N R S+ +LW + + ++E
Sbjct: 306 VIVLNLNLVVKQGDFKRHRWSNRKRLSASKSSLIRNLRLSESLRKNQLWNGIISITLLEG 365
Query: 210 QDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPL-ILTV 268
+++ E+F++ G K+ K + NP W E F F D + IL +
Sbjct: 366 KNV---SGGNMTEMFVQLKLGEQRYKSKTLCK-SANPQWQEQFDF---HYFSDRMGILDI 418
Query: 269 EDKLGDNK--EECLGRL-----VLPLSKAGKRFLPLPA--AAIWYNLERNIANGEEKKDV 319
E D+K EE LG LPL + LPL + A+ + G V
Sbjct: 419 EVWGKDSKKHEERLGTCKVDISALPLKQDNCLELPLESCQGALLMLITLTPCTG-----V 473
Query: 320 RFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVLELGILSAKELLPMKSR 379
+ F + + + L+ +G+L++ +L A +LL +
Sbjct: 474 SISDLCVCPFEDPSERQQISQRYAFQNSLKDVKD------VGILQVKVLKASDLL---AA 524
Query: 380 DGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPG 439
D G +D +C+ + N ++T T+ + +P+WN+ +T+ + D + V+ + VFD G
Sbjct: 525 DFSGKSDPFCLLELGNDRLQTHTIYKNLNPEWNKVFTFPIKDIHDVLEVTVFD----EDG 580
Query: 440 GAKDSRIGKVRIRLSTL 456
+GKV I L ++
Sbjct: 581 DKAPDFLGKVAIPLLSI 597
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Mus musculus (taxid: 10090) |
| >sp|Q3U7R1|ESYT1_MOUSE Extended synaptotagmin-1 OS=Mus musculus GN=Esyt1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 92/404 (22%), Positives = 164/404 (40%), Gaps = 59/404 (14%)
Query: 37 QMEFLYVRIVRARDLQVNQ-VTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKE 95
++ L R + ++D V + G DPY V++G + +++LNP W + +
Sbjct: 322 RIHLLAARGLSSKDKYVKGLIEGKSDPYALVRVGTQTFCSRVIDEELNPHWGETYEVIVH 381
Query: 96 RLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS-RARG 154
+ +E+ V DK DF+G++K+D+ + + D+ W L+ G R
Sbjct: 382 EVPGQEIEVEVFDKDPDKDDFLGRMKLDVGKVLQAGVLDN-----WYPLQGGQGQVHLRL 436
Query: 155 ELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLVP 214
E + + + D+ W+ + R + P L V + AQDL
Sbjct: 437 EWLSLLPDAEKLDQVLQ--WNRG---------ITSRPE---PPSAAILVVYLDRAQDLPL 482
Query: 215 KQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGD 274
K+ N+ P ++ +V + + + T +P W E F +P L + V+D D
Sbjct: 483 KKGNKEPNPMVQLSVQDVT-RESKATYSTNSPVWEEAFRFFLQDPRSQELDVQVKD---D 538
Query: 275 NKEECLGRLVLPLSKAGKRFLPLPAAAI----WYNLERNIANGE------------EKKD 318
++ LG L LPL++ L A+ + W+ L + N + +
Sbjct: 539 SRALTLGALTLPLARL------LTASELTLDQWFQLSSSGPNSRLYMKLVMRILYLDYSE 592
Query: 319 VRF----ASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVLELGILSAKELL 374
+RF ++ R SL+ G V Y + S VL + +L A++L+
Sbjct: 593 IRFPTVPGAQDWDRESLETGSSVDAPPRPYHTTPNSHFG-----TENVLRIHVLEAQDLI 647
Query: 375 PMKSRDG---RGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQY 415
G +G +D Y K A K RT V + +P+WNE +
Sbjct: 648 AKDRFLGGLVKGKSDPYVKLKVAGKSFRTHVVREDLNPRWNEVF 691
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May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
| >sp|Q6DN14|MCTP1_HUMAN Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 100/458 (21%), Positives = 183/458 (39%), Gaps = 86/458 (18%)
Query: 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTK 94
M L + + R + L GT DPYV+ KIG ++ I K LNP W +
Sbjct: 260 MYQLDITLRRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKII--HKNLNPVWEEKACILV 317
Query: 95 ERL-QAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLA---PEWKR------- 143
+ L + + +++ D + DF+G +D+ + P D L P +
Sbjct: 318 DHLREPLYIKVFDYD-FGLQDDFMGSAFLDLTQLELNRPTDVTLTLKDPHYPDHDLGIIL 376
Query: 144 ----LEAKDG-SRARGELMFAIWFGTQADEAFSSAWHSDTAVVS------GENIMN---- 188
L K+G SR LM W + + + + S +V S G +
Sbjct: 377 LSVILTPKEGESRDVTMLMRKSWKRSSKELSENEVVGSYFSVKSLFWRTCGRPALPVLGF 436
Query: 189 CRSK--------------------VYVSPKLW--YLRVNVIEAQDLVPKQRNRNPEVFIK 226
CR++ ++ LW + + +IE +DL N + ++K
Sbjct: 437 CRAELQNPYCKNVQFQTQSLRLSDLHRKSHLWRGIVSITLIEGRDLKAMDSNGLSDPYVK 496
Query: 227 AIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLP 286
G+ K+ + KT+NP W E F E + +T DK +++ +GR +
Sbjct: 497 FRLGHQKYKSKI-MPKTLNPQWREQFDFHLYEERGGVIDITAWDKDAGKRDDFIGRCQVD 555
Query: 287 LSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSLDGG--YHVFDEATNY 344
LS + + LE + GE + L +L + D + N
Sbjct: 556 LSALSREQT--------HKLELQLEEGE--------GHLVLLVTLTASATVSISDLSVNS 599
Query: 345 SSDL--RSTMKQLWPPV--------IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYA 394
D R + + + P+ +G L++ ++ A+ L+ + D G +D +CV +
Sbjct: 600 LEDQKEREEILKRYSPLRIFHNLKDVGFLQVKVIRAEGLM---AADVTGKSDPFCVVELN 656
Query: 395 NKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFD 432
N + T TV + +P+WN+ +T+ + D ++V+ + V+D
Sbjct: 657 NDRLLTHTVYKNLNPEWNKVFTFNIKDIHSVLEVTVYD 694
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Homo sapiens (taxid: 9606) |
| >sp|Q9BSJ8|ESYT1_HUMAN Extended synaptotagmin-1 OS=Homo sapiens GN=ESYT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 118/533 (22%), Positives = 212/533 (39%), Gaps = 76/533 (14%)
Query: 37 QMEFLYVRIVRARDLQVNQ-VTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKE 95
++ L R + ++D V + G DPY V++G + +++LNP+W + +
Sbjct: 332 RIHLLAARGLSSKDKYVKGLIEGKSDPYALVRLGTQTFCSRVIDEELNPQWGETYEVMVH 391
Query: 96 RLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGE 155
+ +E+ V DK DF+G++K+D+ + + + + +W L+ +G+
Sbjct: 392 EVPGQEIEVEVFDKDPDKDDFLGRMKLDVGKVLQ-----ASVLDDWFPLQG-----GQGQ 441
Query: 156 LMFAI-WFGTQAD-EAFSSAWHSDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLV 213
+ + W +D E + V S + P L V + AQDL
Sbjct: 442 VHLRLEWLSLLSDAEKLEQVLQWNWGVSSRPD----------PPSAAILVVYLDRAQDLP 491
Query: 214 PKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLG 273
K+ N+ P ++ +V + + + T P W E F +P L + V+D
Sbjct: 492 LKKGNKEPNPMVQLSIQDVT-QESKAVYSTNCPVWEEAFRFFLQDPQSQELDVQVKD--- 547
Query: 274 DNKEECLGRLVLPLSKAGKRFLPLPAAAI--WYNLERNIANGE--EKKDVRF----ASRI 325
D++ LG L LPL+ R L P + W+ L + N K +R +S I
Sbjct: 548 DSRALTLGALTLPLA----RLLTAPELILDQWFQLSSSGPNSRLYMKLVMRILYLDSSEI 603
Query: 326 CLRF--SLDGGYHVFDEATNYSSDLRS------TMKQLWPPVIGVLELGILSAKELLPMK 377
C G + V E S + + T VL + +L A++L+
Sbjct: 604 CFPTVPGCPGAWDVDSENPQRGSSVDAPPRPCHTTPDSQFGTEHVLRIHVLEAQDLIAKD 663
Query: 378 SRDG---RGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNC 434
G +G +D Y K A + R+ V + +P+WNE + ++T V
Sbjct: 664 RFLGGLVKGKSDPYVKLKLAGRSFRSHVVREDLNPRWNEVFE-------VIVTSVPGQEL 716
Query: 435 HLH---PGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFTCS 491
+ KD +G+ ++RL+T+ + + + + +P+G + +L R T +
Sbjct: 717 EVEVFDKDLDKDDFLGRCKVRLTTV-LNSGFLDEWLTLEDVPSGRLHLRLERLTPRPTAA 775
Query: 492 SFVNLLQTYSQPLLPKMHYINPLSVFQIDSLRHQATHLLSSRLSRAEP-PLRR 543
+LQ S+ Q A LLS + RAE PLR+
Sbjct: 776 ELEEVLQVN--------------SLIQTQKSAELAAALLSIYMERAEDLPLRK 814
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May play a role as calcium-regulated intrinsic membrane protein. Homo sapiens (taxid: 9606) |
| >sp|Q5RAG2|ESYT1_PONAB Extended synaptotagmin-1 OS=Pongo abelii GN=ESYT1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 91/401 (22%), Positives = 162/401 (40%), Gaps = 50/401 (12%)
Query: 37 QMEFLYVRIVRARDLQVNQ-VTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKE 95
++ L R + ++D V + G DPY V++G + +++LNP+W + +
Sbjct: 332 RIHLLAARGLTSKDKYVKGLIEGKSDPYALVRLGTQTFCSRVIDEELNPQWGETYEVMVH 391
Query: 96 RLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGE 155
+ +E+ V DK DF+G++K+D+ + + + + +W L+ +G+
Sbjct: 392 EVPGQEIEVEVFDKDPDKDDFLGRMKLDVGKVLQ-----AGVLDDWFPLQG-----GQGQ 441
Query: 156 LMFAI-WFGTQAD-EAFSSAWHSDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLV 213
+ + W +D E + V S P L V + AQDL
Sbjct: 442 VHLRLEWLSLLSDAEKLEQVLQWNQGVSSRPE----------PPSAAILVVYLDRAQDLP 491
Query: 214 PKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLG 273
K+ N+ P ++ +V + + + T P W E F +P L + V+D
Sbjct: 492 LKKGNKEPNPMVQLSIQDVT-QESKAVYSTNCPVWEEAFRFFLQDPQSQELDVQVKD--- 547
Query: 274 DNKEECLGRLVLPLSKAGKRFLPLPAAAI--WYNLERNIANGE--EKKDVRF----ASRI 325
D++ LG L LPL+ R L P + W+ L + N K +R +S I
Sbjct: 548 DSRALTLGALTLPLA----RLLTAPELILDQWFQLSSSGPNSRLYMKLVMRILYLDSSEI 603
Query: 326 CLRF--SLDGGYHVFDEATNYSSDLRS------TMKQLWPPVIGVLELGILSAKELLPMK 377
C G + V E S + + T VL + +L A++L+
Sbjct: 604 CFPTVPGCPGAWDVDSENPQRGSSVDAPPRPCHTTPDSQFGTEHVLRIHVLEAQDLIAKD 663
Query: 378 SRDG---RGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQY 415
G +G +D Y K A + R+ V + +P+WNE +
Sbjct: 664 RFLGGLVKGKSDPYVKLKLAGRSFRSHVVREDLNPRWNEVF 704
|
May play a role as calcium-regulated intrinsic membrane protein. Pongo abelii (taxid: 9601) |
| >sp|Q9Z1X1|ESYT1_RAT Extended synaptotagmin-1 OS=Rattus norvegicus GN=Esyt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 91/399 (22%), Positives = 161/399 (40%), Gaps = 49/399 (12%)
Query: 37 QMEFLYVRIVRARDLQVNQ-VTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKE 95
++ L R + ++D V + G DPY V++G + +++LNP W + +
Sbjct: 324 RIHLLAARGLSSKDKYVKGLIEGKSDPYALVRVGTQTFCSRVIDEELNPHWGETYEVIVH 383
Query: 96 RLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS-RARG 154
+ +E+ V DK DF+G++K+D+ + + D+ W L+ G R
Sbjct: 384 EVPGQEIEVEVFDKDPDKDDFLGRMKLDVGKVLQAGVLDN-----WYPLQGGQGQVHLRL 438
Query: 155 ELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLVP 214
E + + + D+ W+ + R + P L V + AQDL
Sbjct: 439 EWLSLLPDAEKLDQVLQ--WNRG---------ITSRPE---PPSAAILVVYLDRAQDLPL 484
Query: 215 KQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGD 274
K+ N+ P ++ +V + + + T P W E F +P L + V+D D
Sbjct: 485 KKGNKEPNPMVQLSVQDVT-QESKATYSTNCPVWEEAFRFFLQDPRSQELDVQVKD---D 540
Query: 275 NKEECLGRLVLPLSKAGKRFLPLPAAAI--WYNLERNIANGEEKKDVRFASRIC------ 326
++ LG L LPL+ R L + W+ L + N + ++ RI
Sbjct: 541 SRALTLGALTLPLA----RLLTASELTLDQWFQLSSSGPN--SRLYMKLVMRILYLDSSE 594
Query: 327 LRFSLDGGYHVFDE---ATNYSSDLRSTMKQLWP----PVIGVLELGILSAKELLPMKSR 379
+R + G +D T S D P VL + +L A++L+
Sbjct: 595 MRLPTEPGAQDWDSESPETGSSVDAPPRPYHTTPNSHFGTENVLRIHVLEAQDLIAKDRF 654
Query: 380 DG---RGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQY 415
G +G +D Y K A + +RT V + +P+WNE +
Sbjct: 655 LGGLVKGKSDPYVKLKVAGRSLRTHVVREDLNPRWNEVF 693
|
May play a role as calcium-regulated intrinsic membrane protein. Rattus norvegicus (taxid: 10116) |
| >sp|C9J798|RAS4B_HUMAN Putative Ras GTPase-activating protein 4B OS=Homo sapiens GN=RASA4B PE=5 SV=2 | Back alignment and function description |
|---|
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 107/251 (42%), Gaps = 38/251 (15%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGT-TIPFEKKLNPEWNQVF-AFTKERLQ 98
LY+RIV ++L +TG+ DPY VK+ N T K L P W + +
Sbjct: 7 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEEYQVHLPPTFH 66
Query: 99 AISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMF 158
A++ ++ +D + + D IGK+ + I S +G +
Sbjct: 67 AVAFYVMDEDALSRD-DVIGKVCLTRDTI---------------------ASHPKGFSGW 104
Query: 159 AIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRN 218
A DE V GE ++ R +V+ + LR +V+EA+DL PK RN
Sbjct: 105 AHLTEVDPDEE-----------VQGE--IHLRLEVWPGARACRLRCSVLEARDLAPKDRN 151
Query: 219 RNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEE 278
+ F++ + +T++ KK+ P WNE F E + L + D ++ +
Sbjct: 152 GTSDPFVRVRYKGRTRETSI-VKKSCYPRWNETFEFELQEGAMEALCVEAWDWDLVSRND 210
Query: 279 CLGRLVLPLSK 289
LG++V+ + +
Sbjct: 211 FLGKVVIDVQR 221
|
Ca(2+)-dependent Ras GTPase-activating protein, that may play a role in the Ras-MAPK pathway. Homo sapiens (taxid: 9606) |
| >sp|O43374|RASL2_HUMAN Ras GTPase-activating protein 4 OS=Homo sapiens GN=RASA4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 107/251 (42%), Gaps = 38/251 (15%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGT-TIPFEKKLNPEWNQVF-AFTKERLQ 98
LY+RIV ++L +TG+ DPY VK+ N T K L P W + +
Sbjct: 7 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEEYQVHLPPTFH 66
Query: 99 AISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMF 158
A++ ++ +D + + D IGK+ + I S +G +
Sbjct: 67 AVAFYVMDEDALSRD-DVIGKVCLTRDTI---------------------ASHPKGFSGW 104
Query: 159 AIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRN 218
A DE V GE ++ R +V+ + LR +V+EA+DL PK RN
Sbjct: 105 AHLTEVDPDEE-----------VQGE--IHLRLEVWPGARACRLRCSVLEARDLAPKDRN 151
Query: 219 RNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEE 278
+ F++ + +T++ KK+ P WNE F E + L + D ++ +
Sbjct: 152 GTSDPFVRVRYKGRTRETSI-VKKSCYPRWNETFEFELQEGAMEALCVEAWDWDLVSRND 210
Query: 279 CLGRLVLPLSK 289
LG++V+ + +
Sbjct: 211 FLGKVVIDVQR 221
|
Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis. Homo sapiens (taxid: 9606) |
| >sp|O43581|SYT7_HUMAN Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 124/277 (44%), Gaps = 56/277 (20%)
Query: 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI---GNYKGTTIPFEK 80
GR + + ++ E L V+I++A++L +GT DP+V++ + +K T K
Sbjct: 137 GRIQFSVGYNFQEST--LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK 194
Query: 81 KLNPEWNQVF---AFTKERL--QAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDS 135
LNP WN+ F F E++ + + +++L D+ N D IG++ I + + +
Sbjct: 195 NLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRN-DPIGEVSIPLNKVDL-----T 248
Query: 136 PLAPEWKRLE-AKDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVY 194
+ WK L+ DGS +RGEL+ ++ + A+
Sbjct: 249 QMQTFWKDLKPCSDGSGSRGELLLSLCYNPSANSII------------------------ 284
Query: 195 VSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIF----GNVVLKTTVSAKKTVNPTWNE 250
VN+I+A++L + ++K V K TV+ K+ +NP +NE
Sbjct: 285 ---------VNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTMKRNLNPIFNE 335
Query: 251 DLMF-VAAEPF-DDPLILTVEDKLGDNKEECLGRLVL 285
F + E + +I+TV DK ++ + +G++ L
Sbjct: 336 SFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYL 372
|
May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 768 | ||||||
| 224120414 | 775 | predicted protein [Populus trichocarpa] | 0.993 | 0.984 | 0.638 | 0.0 | |
| 110739553 | 773 | anthranilate phosphoribosyltransferase-l | 0.992 | 0.985 | 0.641 | 0.0 | |
| 15230882 | 773 | calcium-dependent lipid-binding domain-c | 0.992 | 0.985 | 0.641 | 0.0 | |
| 14030691 | 773 | AT3g57880/T10K17_90 [Arabidopsis thalian | 0.992 | 0.985 | 0.640 | 0.0 | |
| 356572078 | 775 | PREDICTED: multiple C2 and transmembrane | 0.992 | 0.983 | 0.640 | 0.0 | |
| 225441389 | 777 | PREDICTED: multiple C2 and transmembrane | 0.992 | 0.980 | 0.641 | 0.0 | |
| 297820588 | 773 | C2 domain-containing protein [Arabidopsi | 0.992 | 0.985 | 0.640 | 0.0 | |
| 356504837 | 775 | PREDICTED: multiple C2 and transmembrane | 0.992 | 0.983 | 0.636 | 0.0 | |
| 357509865 | 775 | Anthranilate phosphoribosyltransferase-l | 0.990 | 0.981 | 0.631 | 0.0 | |
| 449437599 | 774 | PREDICTED: multiple C2 and transmembrane | 0.992 | 0.984 | 0.634 | 0.0 |
| >gi|224120414|ref|XP_002331042.1| predicted protein [Populus trichocarpa] gi|222872972|gb|EEF10103.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1066 bits (2756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/770 (63%), Positives = 620/770 (80%), Gaps = 7/770 (0%)
Query: 5 KEDFSLKETSPKIGGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYV 64
++DF LKET+P +GGG+++G ++LTS++DLVEQM++LYVR+V+A+DL VTG+CDPYV
Sbjct: 7 QDDFLLKETNPHLGGGKITG-DKLTSTYDLVEQMQYLYVRVVKAKDLPAKDVTGSCDPYV 65
Query: 65 EVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDM 124
EVK+GNYKGTT FEKK NPEWNQVFAF+KER+QA +E+ VKDK +V DFIG++ DM
Sbjct: 66 EVKLGNYKGTTRHFEKKTNPEWNQVFAFSKERIQASMLEVTVKDKDLVKDDFIGRVLFDM 125
Query: 125 PDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSG- 183
+IPKRVPPDSPLAP+W RLE + G + +GELM A+W GTQADEAF AWHSD A VSG
Sbjct: 126 NEIPKRVPPDSPLAPQWYRLEDRKGDKFKGELMLAVWMGTQADEAFPEAWHSDAATVSGT 185
Query: 184 ENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKT 243
+++ N RSKVY+SPKLWYLRVNVIEAQDLVP + R PEV++KAI GN VL+T VS ++
Sbjct: 186 DSLANIRSKVYLSPKLWYLRVNVIEAQDLVPSDQGRYPEVYVKAILGNQVLRTRVSPSRS 245
Query: 244 VNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIW 303
+NP WNEDLMFVA+EPF++PLIL+VED++ NK+E LGR +P+ +R P W
Sbjct: 246 INPMWNEDLMFVASEPFEEPLILSVEDRIAPNKDEVLGRCAIPMHHVDRRLDHNPVNTRW 305
Query: 304 YNLERN-IANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGV 362
+NLE++ I GE+KK+++FASRI +R L+GGYHV DE+T+YSSDLR T KQLW IGV
Sbjct: 306 FNLEKHVIVEGEKKKEIKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKHSIGV 365
Query: 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDP 422
LELGIL+A+ L+PMK +DGRGTTDAYCVAKY KWVRTRT++DSF PKWNEQYTWEV+DP
Sbjct: 366 LELGILNAQGLMPMKPKDGRGTTDAYCVAKYGQKWVRTRTIIDSFTPKWNEQYTWEVFDP 425
Query: 423 YTVITLVVFDNCHLH----PGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKK 478
TVIT+ VFDNCHLH PGG++DSRIGKVRIRLSTLETDR+YTHSYPL+ L NGVKK
Sbjct: 426 CTVITIGVFDNCHLHGGDKPGGSRDSRIGKVRIRLSTLETDRVYTHSYPLLVLHRNGVKK 485
Query: 479 MGEVQLAVRFTCSSFVNLLQTYSQPLLPKMHYINPLSVFQIDSLRHQATHLLSSRLSRAE 538
MGE+ LAVRFTCSS +N++ YS PLLPKMHYI+PL+V Q+DSLRHQAT ++S RLSR+E
Sbjct: 486 MGEIHLAVRFTCSSLLNMMHMYSHPLLPKMHYIHPLTVSQLDSLRHQATVIVSVRLSRSE 545
Query: 539 PPLRREVVEYLLDVGSQMWSMRRGKANLARLMRFLNGFGVAWIWFDQVRRWKNPMTTTFV 598
PPLR+E+VEY+LDVGS MWSMRR KAN R+M G WFDQ+ WKNP+TT +
Sbjct: 546 PPLRKEIVEYMLDVGSHMWSMRRSKANFFRIMNVFGGLIALGKWFDQICNWKNPITTVLI 605
Query: 599 HVFYVIMVLFPQMILATFFFILFGVVIMKFKRRPRHPPHMDIKLSFADKAHPDELDEEFD 658
H+ ++I+VL+P++IL T F LF + + ++RR RHPPHMD +LS A+ AHPDELDEEFD
Sbjct: 606 HILFIILVLYPELILPTIFLYLFLIGVWHYRRRSRHPPHMDTRLSHAESAHPDELDEEFD 665
Query: 659 TFPSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAMFSIFCLM 718
TFP+S+ I+ RYDRLRSIA R+ T+ GDL +Q ERLQSL+ WRDPRATA+F +FCL+
Sbjct: 666 TFPTSQSADIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFCLI 725
Query: 719 AAVVFYIVPLWILLLFAGPFVMRHPRFRIDIPALPQNFLRRLPSKAESLL 768
AA+V YI P ++ + G +V+RHPRFR +P++P NF RRLP++ +S+L
Sbjct: 726 AAIVLYITPFQVVAVLIGLYVLRHPRFRHKLPSVPLNFFRRLPARTDSML 775
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110739553|dbj|BAF01685.1| anthranilate phosphoribosyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1063 bits (2750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/768 (64%), Positives = 616/768 (80%), Gaps = 6/768 (0%)
Query: 6 EDFSLKETSPKIGGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVE 65
EDFSLKET P +GGG++SG ++LTS++DLVEQM++LYVR+V+A++L +TG+CDPYVE
Sbjct: 7 EDFSLKETRPHLGGGKLSG-DKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGSCDPYVE 65
Query: 66 VKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMP 125
VK+GNYKGTT FEKK NPEWNQVFAF+K+R+QA +E VKDK V D IG++ D+
Sbjct: 66 VKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDLIGRVVFDLN 125
Query: 126 DIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGEN 185
++PKRVPPDSPLAP+W RLE + G + +GELM A+WFGTQADEAF AWHSD A VSG +
Sbjct: 126 EVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWFGTQADEAFPEAWHSDAATVSGTD 185
Query: 186 IM-NCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTV 244
+ N RSKVY+SPKLWYLRVNVIEAQDL+P + R PEV++KAI GN L+T VS +T+
Sbjct: 186 ALANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQRYPEVYVKAIVGNQALRTRVSQSRTI 245
Query: 245 NPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWY 304
NP WNEDLMFVAAEPF++PLIL+VED++ NK+E LGR +PL +RF P + WY
Sbjct: 246 NPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEALGRCAIPLQYLDRRFDHKPVNSRWY 305
Query: 305 NLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVLE 364
NLE++I EKK+ +FASRI +R L+GGYHV DE+T+YSSDLR T KQLW P IGVLE
Sbjct: 306 NLEKHIMVDGEKKETKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNIGVLE 365
Query: 365 LGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYT 424
LGIL+A L+PMK++DGRGTTDAYCVAKY KW+RTRT++DSF P+WNEQYTWEV+DP T
Sbjct: 366 LGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEVFDPCT 425
Query: 425 VITLVVFDNCHLHPG----GAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMG 480
V+T+ VFDNCHLH G GAKDSRIGKVRIRLSTLETDR+YTHSYPL+ L PNGVKKMG
Sbjct: 426 VVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKKMG 485
Query: 481 EVQLAVRFTCSSFVNLLQTYSQPLLPKMHYINPLSVFQIDSLRHQATHLLSSRLSRAEPP 540
E+ LAVRFTCSS +N++ YSQPLLPKMHYI+PL+V Q+D+LRHQAT ++S RL+RAEPP
Sbjct: 486 EIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLTRAEPP 545
Query: 541 LRREVVEYLLDVGSQMWSMRRGKANLARLMRFLNGFGVAWIWFDQVRRWKNPMTTTFVHV 600
LR+EVVEY+LDVGS MWSMRR KAN R+M L+G WF+Q+ WKNP+TT +H+
Sbjct: 546 LRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPITTVLIHL 605
Query: 601 FYVIMVLFPQMILATFFFILFGVVIMKFKRRPRHPPHMDIKLSFADKAHPDELDEEFDTF 660
++I+VL+P++IL T F LF + I ++ RPRHPPHMD +LS AD AHPDELDEEFDTF
Sbjct: 606 LFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTF 665
Query: 661 PSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAMFSIFCLMAA 720
P+S+ I+ RYDRLRSIA R+ T+ GDL +Q ERLQSL+ WRDPRATA+F +FCL+AA
Sbjct: 666 PTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFCLIAA 725
Query: 721 VVFYIVPLWILLLFAGPFVMRHPRFRIDIPALPQNFLRRLPSKAESLL 768
V+ Y+ P ++ L G + +RHPRFR +P++P NF RRLP++ + +L
Sbjct: 726 VILYVTPFQVVALCIGIYALRHPRFRYKLPSVPLNFFRRLPARTDCML 773
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15230882|ref|NP_191347.1| calcium-dependent lipid-binding domain-containing plant phosphoribosyltransferase-like protein [Arabidopsis thaliana] gi|6729531|emb|CAB67616.1| anthranilate phosphoribosyltransferase-like protein [Arabidopsis thaliana] gi|332646191|gb|AEE79712.1| calcium-dependent lipid-binding domain-containing plant phosphoribosyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1063 bits (2749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/768 (64%), Positives = 616/768 (80%), Gaps = 6/768 (0%)
Query: 6 EDFSLKETSPKIGGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVE 65
EDFSLKET P +GGG++SG ++LTS++DLVEQM++LYVR+V+A++L +TG+CDPYVE
Sbjct: 7 EDFSLKETRPHLGGGKLSG-DKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGSCDPYVE 65
Query: 66 VKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMP 125
VK+GNYKGTT FEKK NPEWNQVFAF+K+R+QA +E VKDK V D IG++ D+
Sbjct: 66 VKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDLIGRVVFDLN 125
Query: 126 DIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGEN 185
++PKRVPPDSPLAP+W RLE + G + +GELM A+WFGTQADEAF AWHSD A VSG +
Sbjct: 126 EVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWFGTQADEAFPEAWHSDAATVSGTD 185
Query: 186 IM-NCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTV 244
+ N RSKVY+SPKLWYLRVNVIEAQDL+P + R PEV++KAI GN L+T VS +T+
Sbjct: 186 ALANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQRYPEVYVKAIVGNQALRTRVSQSRTI 245
Query: 245 NPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWY 304
NP WNEDLMFVAAEPF++PLIL+VED++ NK+E LGR +PL +RF P + WY
Sbjct: 246 NPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYLDRRFDHKPVNSRWY 305
Query: 305 NLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVLE 364
NLE++I EKK+ +FASRI +R L+GGYHV DE+T+YSSDLR T KQLW P IGVLE
Sbjct: 306 NLEKHIMVDGEKKETKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNIGVLE 365
Query: 365 LGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYT 424
LGIL+A L+PMK++DGRGTTDAYCVAKY KW+RTRT++DSF P+WNEQYTWEV+DP T
Sbjct: 366 LGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEVFDPCT 425
Query: 425 VITLVVFDNCHLHPG----GAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMG 480
V+T+ VFDNCHLH G GAKDSRIGKVRIRLSTLETDR+YTHSYPL+ L PNGVKKMG
Sbjct: 426 VVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKKMG 485
Query: 481 EVQLAVRFTCSSFVNLLQTYSQPLLPKMHYINPLSVFQIDSLRHQATHLLSSRLSRAEPP 540
E+ LAVRFTCSS +N++ YSQPLLPKMHYI+PL+V Q+D+LRHQAT ++S RL+RAEPP
Sbjct: 486 EIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLTRAEPP 545
Query: 541 LRREVVEYLLDVGSQMWSMRRGKANLARLMRFLNGFGVAWIWFDQVRRWKNPMTTTFVHV 600
LR+EVVEY+LDVGS MWSMRR KAN R+M L+G WF+Q+ WKNP+TT +H+
Sbjct: 546 LRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPITTVLIHL 605
Query: 601 FYVIMVLFPQMILATFFFILFGVVIMKFKRRPRHPPHMDIKLSFADKAHPDELDEEFDTF 660
++I+VL+P++IL T F LF + I ++ RPRHPPHMD +LS AD AHPDELDEEFDTF
Sbjct: 606 LFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTF 665
Query: 661 PSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAMFSIFCLMAA 720
P+S+ I+ RYDRLRSIA R+ T+ GDL +Q ERLQSL+ WRDPRATA+F +FCL+AA
Sbjct: 666 PTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFCLIAA 725
Query: 721 VVFYIVPLWILLLFAGPFVMRHPRFRIDIPALPQNFLRRLPSKAESLL 768
V+ Y+ P ++ L G + +RHPRFR +P++P NF RRLP++ + +L
Sbjct: 726 VILYVTPFQVVALCIGIYALRHPRFRYKLPSVPLNFFRRLPARTDCML 773
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|14030691|gb|AAK53020.1|AF375436_1 AT3g57880/T10K17_90 [Arabidopsis thaliana] gi|21464555|gb|AAM52232.1| AT3g57880/T10K17_90 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1062 bits (2747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/768 (64%), Positives = 616/768 (80%), Gaps = 6/768 (0%)
Query: 6 EDFSLKETSPKIGGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVE 65
EDFSLKET P +GGG++SG ++LTS++DLVEQM++LYVR+V+A++L +TG+CDPYVE
Sbjct: 7 EDFSLKETRPHLGGGKLSG-DKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGSCDPYVE 65
Query: 66 VKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMP 125
VK+GNYKGTT FEKK NPEWNQVFAF+K+R+QA +E VKDK V D IG++ D+
Sbjct: 66 VKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDLIGRVVFDLN 125
Query: 126 DIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGEN 185
++PKRVPPDSPLAP+W RLE + G + +GELM A+WFGTQADEAF AWHSD A VSG +
Sbjct: 126 EVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWFGTQADEAFPEAWHSDAATVSGTD 185
Query: 186 IM-NCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTV 244
+ N RSKVY+SPKLWYLRVNVIEAQDL+P + R PEV++KAI GN L+T VS +T+
Sbjct: 186 ALANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQRYPEVYVKAIVGNQALRTRVSQSRTI 245
Query: 245 NPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWY 304
NP WNEDLMFVAAEPF++PLIL+VED++ NK+E LGR +PL +RF P + WY
Sbjct: 246 NPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYLDRRFDHKPVNSRWY 305
Query: 305 NLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVLE 364
NLE++I EKK+ +FASRI +R L+GGYHV DE+T+YSSDLR T KQLW P IGVLE
Sbjct: 306 NLEKHIMVDGEKKETKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNIGVLE 365
Query: 365 LGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYT 424
LGIL+A L+PMK++DGRGTTDAYCVAKY KW+RTRT++DSF P+WNEQYTWEV+DP T
Sbjct: 366 LGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEVFDPCT 425
Query: 425 VITLVVFDNCHLHPG----GAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMG 480
V+T+ VFDNCHLH G GAKDSRIGKVRIRLSTLETDR+YTHSYPL+ L PNGVKKMG
Sbjct: 426 VVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKKMG 485
Query: 481 EVQLAVRFTCSSFVNLLQTYSQPLLPKMHYINPLSVFQIDSLRHQATHLLSSRLSRAEPP 540
E+ LAVRFTCSS +N++ YSQPLLPKMHYI+PL+V Q+D+LRHQAT ++S RL++AEPP
Sbjct: 486 EIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLTQAEPP 545
Query: 541 LRREVVEYLLDVGSQMWSMRRGKANLARLMRFLNGFGVAWIWFDQVRRWKNPMTTTFVHV 600
LR+EVVEY+LDVGS MWSMRR KAN R+M L+G WF+Q+ WKNP+TT +H+
Sbjct: 546 LRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPITTVLIHL 605
Query: 601 FYVIMVLFPQMILATFFFILFGVVIMKFKRRPRHPPHMDIKLSFADKAHPDELDEEFDTF 660
++I+VL+P++IL T F LF + I ++ RPRHPPHMD +LS AD AHPDELDEEFDTF
Sbjct: 606 LFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTF 665
Query: 661 PSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAMFSIFCLMAA 720
P+S+ I+ RYDRLRSIA R+ T+ GDL +Q ERLQSL+ WRDPRATA+F +FCL+AA
Sbjct: 666 PTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFCLIAA 725
Query: 721 VVFYIVPLWILLLFAGPFVMRHPRFRIDIPALPQNFLRRLPSKAESLL 768
V+ Y+ P ++ L G + +RHPRFR +P++P NF RRLP++ + +L
Sbjct: 726 VILYVTPFQVVALCIGIYALRHPRFRYKLPSVPLNFFRRLPARTDCML 773
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572078|ref|XP_003554197.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1055 bits (2728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/770 (64%), Positives = 616/770 (80%), Gaps = 8/770 (1%)
Query: 6 EDFSLKETSPKIGGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVE 65
EDF LKET P +GGG+VSG ++LTS++DLVEQM++LYVR+V+A+DL VTG+CDPY E
Sbjct: 7 EDFLLKETKPHLGGGKVSG-DKLTSTYDLVEQMQYLYVRVVKAKDLPAKDVTGSCDPYTE 65
Query: 66 VKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMP 125
VK+GNYKGTT FEKK NPEWNQVFAF+K+R+QA +E+ VKDK +V DFIG++ D+
Sbjct: 66 VKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASILEVTVKDKDVVKDDFIGRVLFDLN 125
Query: 126 DIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGEN 185
+IPKRVPPDSPLAP+W RLE + G +A+GELM A+W GTQADEAF AWHSD A VSG +
Sbjct: 126 EIPKRVPPDSPLAPQWYRLEDRKGDKAKGELMLAVWMGTQADEAFPEAWHSDAATVSGTD 185
Query: 186 IM-NCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTV 244
+ N RSKVY+SPKLWYLRVN+IEAQDL P + R PEVF+KA GN L+T +S +T+
Sbjct: 186 ALANIRSKVYLSPKLWYLRVNIIEAQDLQPSDKGRYPEVFVKATLGNQTLRTRISQSRTI 245
Query: 245 NPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWY 304
NP WNEDLMFVAAEPF++PLIL+VED++ NKEE LGR +PL +R P WY
Sbjct: 246 NPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKEESLGRCAIPLQMVDRRLDQKPVNTKWY 305
Query: 305 NLERNIA--NGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGV 362
N+E++I GE+KK+++F+S+I +R L+GGYHV DE+T+YSSDLR T KQLW IGV
Sbjct: 306 NIEKHIVIMEGEKKKEIKFSSKIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGV 365
Query: 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDP 422
LELGILSA L+PMK++DG+GTTDAYCVAKY KWVRTRT++DSF P+WNEQYTWEV+DP
Sbjct: 366 LELGILSAHGLMPMKTKDGKGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQYTWEVFDP 425
Query: 423 YTVITLVVFDNCHLH----PGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKK 478
TVIT+ VFDNCHLH PGG+KDS+IGKVRIRLSTLETDR+YTHSYPL+ L PNGVKK
Sbjct: 426 CTVITIGVFDNCHLHGGDKPGGSKDSKIGKVRIRLSTLETDRVYTHSYPLLVLNPNGVKK 485
Query: 479 MGEVQLAVRFTCSSFVNLLQTYSQPLLPKMHYINPLSVFQIDSLRHQATHLLSSRLSRAE 538
MGE+ LAVRFTCSS +N++ YS PLLPKMHYI+PL+V Q+D+LRHQAT ++S RLSRAE
Sbjct: 486 MGEIHLAVRFTCSSLLNMMHMYSLPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLSRAE 545
Query: 539 PPLRREVVEYLLDVGSQMWSMRRGKANLARLMRFLNGFGVAWIWFDQVRRWKNPMTTTFV 598
PPLR+E+VEY+LDVGS MWSMRR KAN R+M L G WFDQ+ WKNP+TT +
Sbjct: 546 PPLRKEIVEYMLDVGSHMWSMRRSKANFFRIMGVLGGLIAVGKWFDQICNWKNPITTVLI 605
Query: 599 HVFYVIMVLFPQMILATFFFILFGVVIMKFKRRPRHPPHMDIKLSFADKAHPDELDEEFD 658
H+ ++I+V++P++IL T F LF + + ++ RPRHPPHMD +LS AD AHPDELDEEFD
Sbjct: 606 HILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFD 665
Query: 659 TFPSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAMFSIFCLM 718
TFP+++ I+ RYDRLRSIA R+ T+ GDL +Q ERLQSL+ WRDPRATA+F IFCL+
Sbjct: 666 TFPTTRASDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLV 725
Query: 719 AAVVFYIVPLWILLLFAGPFVMRHPRFRIDIPALPQNFLRRLPSKAESLL 768
AA+V Y+ P I+ LF G +V+RHPRFR +P++P NF RRLP++ + +L
Sbjct: 726 AAIVLYVTPFQIVALFTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 775
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225441389|ref|XP_002278165.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1050 bits (2716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/772 (64%), Positives = 619/772 (80%), Gaps = 10/772 (1%)
Query: 6 EDFSLKETSPKIGGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVE 65
+DFSLKETSP +GGG+V+G ++LTS++DLVEQM++LYVR+V+A+DL VTG+CDPYVE
Sbjct: 7 DDFSLKETSPHLGGGKVTG-DKLTSTYDLVEQMQYLYVRVVKAKDLPSKDVTGSCDPYVE 65
Query: 66 VKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMP 125
VK+GNYKGTT FEKK NPEWN+VFAF+K+R+QA +E++VKDK V D+IG++ D+
Sbjct: 66 VKLGNYKGTTPHFEKKTNPEWNRVFAFSKDRMQASMLEVIVKDKDFVKDDYIGRVVFDLN 125
Query: 126 DIPKRVPPDSPLAPEWKRLEAKDGSRARG-ELMFAIWFGTQADEAFSSAWHSDTAVVSG- 183
++PKRVPPDSPLAP+W RLE + G + +G ELM A+W GTQADEAF AWHSD A VSG
Sbjct: 126 EVPKRVPPDSPLAPQWYRLEDRKGDKVKGGELMLAVWMGTQADEAFPDAWHSDAAAVSGS 185
Query: 184 ENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKT 243
+ + N RSKVY+SPKLWYLRVNVIEAQDL P R R PEVF+KAI GN L+T +S K+
Sbjct: 186 DGLANMRSKVYLSPKLWYLRVNVIEAQDLQPTDRGRYPEVFVKAILGNQALRTRISQIKS 245
Query: 244 VNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIW 303
+NP WNEDLMFVA+EPF++PLIL+VED++G+NK+E LGR +PL +RF + W
Sbjct: 246 INPMWNEDLMFVASEPFEEPLILSVEDRVGNNKDEVLGRCAIPLQYVDRRFDHKIMNSRW 305
Query: 304 YNLERNIA-NGEEKK-DVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIG 361
+NLE++I +GE+KK +++FASRI LR L+GGYHV DE+T+YSSDLR T K+LW IG
Sbjct: 306 FNLEKHIVVDGEQKKKEIKFASRIHLRICLEGGYHVLDESTHYSSDLRPTEKRLWKSSIG 365
Query: 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYD 421
VLELGIL+A+ LLPMK++DGRGTTDAYCVAKY KWVRTRT++DS PKWNEQYTWEVYD
Sbjct: 366 VLELGILNAQGLLPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSSTPKWNEQYTWEVYD 425
Query: 422 PYTVITLVVFDNCHLH----PGGA-KDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGV 476
P TVIT+ VFDNCHLH GGA KDSRIGKVRIRLSTLETDR+YTHSYPL+ L P GV
Sbjct: 426 PCTVITIGVFDNCHLHGGDKAGGATKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPTGV 485
Query: 477 KKMGEVQLAVRFTCSSFVNLLQTYSQPLLPKMHYINPLSVFQIDSLRHQATHLLSSRLSR 536
KKMGE+ LAVRFTCSS +N++ YSQPLLPKMHY++PL+V Q+DSLRHQAT ++S RLSR
Sbjct: 486 KKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVNQLDSLRHQATQIVSMRLSR 545
Query: 537 AEPPLRREVVEYLLDVGSQMWSMRRGKANLARLMRFLNGFGVAWIWFDQVRRWKNPMTTT 596
AEPPLR+EVVEY+LDVGS MWSMRR KAN R+M L G WFDQ+ WKN +TT
Sbjct: 546 AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLGGLIAVGKWFDQICNWKNSITTV 605
Query: 597 FVHVFYVIMVLFPQMILATFFFILFGVVIMKFKRRPRHPPHMDIKLSFADKAHPDELDEE 656
+H+ + I+V++P++IL T F LF + + F+ RPRHPPHMD +LS AD AHPDELDEE
Sbjct: 606 LIHILFFILVMYPELILPTIFLYLFLIGVWYFRWRPRHPPHMDTRLSHADSAHPDELDEE 665
Query: 657 FDTFPSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAMFSIFC 716
FDTFP+S+ ++ RYDRLRSIA R+ T+ GDL +Q ERLQSL+ WRDPRATA+F +FC
Sbjct: 666 FDTFPTSRPSDVVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFC 725
Query: 717 LMAAVVFYIVPLWILLLFAGPFVMRHPRFRIDIPALPQNFLRRLPSKAESLL 768
L+AA+V Y+ P ++ L G +V+RHPRFR +P++P NF RRLP++ + +L
Sbjct: 726 LVAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 777
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820588|ref|XP_002878177.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324015|gb|EFH54436.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1050 bits (2714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/768 (64%), Positives = 617/768 (80%), Gaps = 6/768 (0%)
Query: 6 EDFSLKETSPKIGGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVE 65
EDFSLKET P +GGG++SG ++LTS++DLVEQM++LYVR+V+A++L +TG+CDPYVE
Sbjct: 7 EDFSLKETRPHLGGGKISG-DKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGSCDPYVE 65
Query: 66 VKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMP 125
VK+GNYKGTT FEKK NPEWNQVFAF+K+R+QA +E VKDK +V D IG++ D+
Sbjct: 66 VKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDVVKDDLIGRVVFDLN 125
Query: 126 DIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGEN 185
++PKRVPPDSPLAP+W RLE + G + +GELM A+WFGTQADEAF AWHSD A VSG +
Sbjct: 126 EVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWFGTQADEAFPEAWHSDAATVSGTD 185
Query: 186 IM-NCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTV 244
+ N RSKVY+SPKLWYLRVNVIEAQDL+P + R PEV++KAI GN L+T VS +T+
Sbjct: 186 ALANIRSKVYLSPKLWYLRVNVIEAQDLIPSDKQRYPEVYVKAIVGNQALRTRVSQSRTI 245
Query: 245 NPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWY 304
NP WNEDLMFVAAEPF++PLIL+VED++ NK+E LGR +PL +RF P + WY
Sbjct: 246 NPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYLDRRFDHKPVNSRWY 305
Query: 305 NLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVLE 364
NLE++I EKK+ +FASRI +R L+GGYHV DE+T+YSSDLR T KQLW P IGVLE
Sbjct: 306 NLEKHIMVDGEKKETKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNIGVLE 365
Query: 365 LGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYT 424
LGIL+A L+PMK++DGRGTTDAYCVAKY KW+RTRT++DSF P+WNEQYTWEV+DP T
Sbjct: 366 LGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEVFDPCT 425
Query: 425 VITLVVFDNCHLHPG----GAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMG 480
V+T+ VFDNCHLH G GAKDSRIGKVRIRLSTLETDR+YTHSYPL+ L PNGVKKMG
Sbjct: 426 VVTVGVFDNCHLHGGEKNGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKKMG 485
Query: 481 EVQLAVRFTCSSFVNLLQTYSQPLLPKMHYINPLSVFQIDSLRHQATHLLSSRLSRAEPP 540
E+ LAVRFTCSS +N++ YS PLLPKMHYI+PL+V Q+D+LRHQAT ++S RL+RAEPP
Sbjct: 486 EIHLAVRFTCSSLLNMMYMYSLPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLTRAEPP 545
Query: 541 LRREVVEYLLDVGSQMWSMRRGKANLARLMRFLNGFGVAWIWFDQVRRWKNPMTTTFVHV 600
LR+EVVEY+LDVGS MWSMRR KAN R+M L+G WF+Q+ WKNP+TT +H+
Sbjct: 546 LRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPITTVLIHL 605
Query: 601 FYVIMVLFPQMILATFFFILFGVVIMKFKRRPRHPPHMDIKLSFADKAHPDELDEEFDTF 660
++I+VL+P++IL T F LF + + ++ RPRHPPHMD +LS AD AHPDELDEEFDTF
Sbjct: 606 LFIILVLYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTF 665
Query: 661 PSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAMFSIFCLMAA 720
P+S+ I+ RYDRLRSIA R+ T+ GDL +Q ERLQSL+ WRDPRATA+F +FCL+AA
Sbjct: 666 PTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFCLIAA 725
Query: 721 VVFYIVPLWILLLFAGPFVMRHPRFRIDIPALPQNFLRRLPSKAESLL 768
V+ Y+ P ++ L G +V+RHPRFR +P++P NF RRLP++ + +L
Sbjct: 726 VILYVTPFQVVALCIGIYVLRHPRFRYKLPSVPLNFFRRLPARTDCML 773
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504837|ref|XP_003521201.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like isoform 1 [Glycine max] gi|356504839|ref|XP_003521202.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1049 bits (2712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/770 (63%), Positives = 615/770 (79%), Gaps = 8/770 (1%)
Query: 6 EDFSLKETSPKIGGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVE 65
EDF LKET P +GGG+VSG ++LTS++DLVEQM++LYVR+V+A+DL VTG+CDPY E
Sbjct: 7 EDFLLKETKPHLGGGKVSG-DKLTSTYDLVEQMQYLYVRVVKAKDLPAKDVTGSCDPYTE 65
Query: 66 VKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMP 125
VK+GNYKGTT F+KK NPEWNQVFAF+K+R+QA +E+ VKDK +V DFIG++ D+
Sbjct: 66 VKLGNYKGTTRHFDKKSNPEWNQVFAFSKDRIQASILEVTVKDKDVVKDDFIGRVLFDLN 125
Query: 126 DIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGEN 185
+IPKRVPPDSPLAP+W RLE + G +A+GELM A+W GTQADEAF AWHSD A VSG +
Sbjct: 126 EIPKRVPPDSPLAPQWYRLEDRKGDKAKGELMLAVWMGTQADEAFPEAWHSDAATVSGTD 185
Query: 186 IM-NCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTV 244
+ N RSKVY+SPKLWYLRVN+IEAQDL P + R PEVF+KA GN L+T +S +T+
Sbjct: 186 ALANIRSKVYLSPKLWYLRVNIIEAQDLQPSDKGRYPEVFVKAALGNQTLRTRISQSRTI 245
Query: 245 NPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWY 304
NP WNEDLMFVAAEPF++PL L+VED++ NKEE LG+ +PL +R P WY
Sbjct: 246 NPMWNEDLMFVAAEPFEEPLTLSVEDRVAPNKEESLGKCAIPLQMVDRRLDQKPVNTKWY 305
Query: 305 NLERNIA--NGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGV 362
N+E+ I GE+KK+++F+S+I +R L+GGYHV DE+T+YSSDLR T KQLW IGV
Sbjct: 306 NIEKYIVIMEGEKKKEIKFSSKIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGV 365
Query: 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDP 422
LELGIL+A+ L+PMK++DG+GTTDAYCVAKY KWVRTRT++DSF P+WNEQYTWEV+DP
Sbjct: 366 LELGILNAQGLMPMKTKDGKGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQYTWEVFDP 425
Query: 423 YTVITLVVFDNCHLH----PGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKK 478
TVIT+ VFDNCHLH PGGAKDS+IGKVRIRLSTLETDR+YTHSYPL+ L PNGVKK
Sbjct: 426 CTVITIGVFDNCHLHGGDKPGGAKDSKIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKK 485
Query: 479 MGEVQLAVRFTCSSFVNLLQTYSQPLLPKMHYINPLSVFQIDSLRHQATHLLSSRLSRAE 538
MGE+ LAVRFTCSS +N++ YS PLLPKMHYI+PL+V Q+D+LRHQAT ++S RLSRAE
Sbjct: 486 MGEIHLAVRFTCSSLLNMMHMYSLPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLSRAE 545
Query: 539 PPLRREVVEYLLDVGSQMWSMRRGKANLARLMRFLNGFGVAWIWFDQVRRWKNPMTTTFV 598
PPLR+E+VEY+LDVGS MWSMRR KAN R+M L G WFDQ+ WKNP+TT +
Sbjct: 546 PPLRKEIVEYMLDVGSHMWSMRRSKANFFRIMGVLGGLIAVGKWFDQICNWKNPITTVLI 605
Query: 599 HVFYVIMVLFPQMILATFFFILFGVVIMKFKRRPRHPPHMDIKLSFADKAHPDELDEEFD 658
H+ ++I+V++P++IL T F LF + + ++ RPRHPPHMD +LS AD AHPDELDEEFD
Sbjct: 606 HILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFD 665
Query: 659 TFPSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAMFSIFCLM 718
TFP+++ I+ RYDRLRSIA R+ T+ GDL +Q ERLQSL+ WRDPRATA+F IFCL+
Sbjct: 666 TFPTTRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLV 725
Query: 719 AAVVFYIVPLWILLLFAGPFVMRHPRFRIDIPALPQNFLRRLPSKAESLL 768
AA+V Y+ P I+ LF G +V+RHPRFR +P++P NF RRLP++ + +L
Sbjct: 726 AAIVLYVTPFQIVALFTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 775
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357509865|ref|XP_003625221.1| Anthranilate phosphoribosyltransferase-like protein [Medicago truncatula] gi|124360660|gb|ABN08649.1| C2 [Medicago truncatula] gi|355500236|gb|AES81439.1| Anthranilate phosphoribosyltransferase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1048 bits (2711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/771 (63%), Positives = 614/771 (79%), Gaps = 10/771 (1%)
Query: 6 EDFSLKETSPKIGGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVE 65
EDF LKET P +GG +VSG ++LTS++DLVEQM++LYVR+V+A++L VTG+CDPYVE
Sbjct: 7 EDFLLKETKPHLGG-KVSG-DKLTSTYDLVEQMQYLYVRVVKAKELPSKDVTGSCDPYVE 64
Query: 66 VKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMP 125
VK+GNYKGTT FEKK NPEWNQVFAF+K+R+QA +E+ VKDK V DFIG++ D+
Sbjct: 65 VKLGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQASVLEVFVKDKDFVKDDFIGRVWFDLN 124
Query: 126 DIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGEN 185
+IPKRVPPDSPLAP+W RLE + + +GELM A+W GTQADEAF AWHSD A VSG +
Sbjct: 125 EIPKRVPPDSPLAPQWYRLEDRKSDKVKGELMLAVWMGTQADEAFPEAWHSDAATVSGTD 184
Query: 186 IM-NCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTV 244
+ N RSKVY+SPKLWYLRVNVIEAQDL P + R PEV++KAI GN L+T +S +++
Sbjct: 185 ALANIRSKVYLSPKLWYLRVNVIEAQDLQPSDKGRFPEVYVKAILGNQTLRTRISQSRSI 244
Query: 245 NPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWY 304
NP WNEDLMFVAAEPF++PLIL+VED++ NKEE LG+ V+PL +R P W+
Sbjct: 245 NPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKEELLGKCVIPLQMMDRRLDHKPVNTRWF 304
Query: 305 NLERN--IANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGV 362
N+E++ I G++KK+++FASRI +R L+GGYHV DE+T+YSSDLR T KQLW IGV
Sbjct: 305 NIEKHVVIMEGDKKKEIKFASRIHMRVCLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGV 364
Query: 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDP 422
LE+GIL+A L+PMKS +GRGTTDAYCVAKY KWVRTRT++DSF P+WNEQYTWEV+DP
Sbjct: 365 LEVGILNASGLMPMKSNNGRGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQYTWEVFDP 424
Query: 423 YTVITLVVFDNCHLH-----PGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVK 477
TVIT+ VFDNCHLH PGG +DS+IGKVRIRLSTLETDR+YTHSYPL+ L P GVK
Sbjct: 425 CTVITIGVFDNCHLHHGGDKPGGQRDSKIGKVRIRLSTLETDRVYTHSYPLLVLHPTGVK 484
Query: 478 KMGEVQLAVRFTCSSFVNLLQTYSQPLLPKMHYINPLSVFQIDSLRHQATHLLSSRLSRA 537
KMGE+QLAVRFTCSS +N++ YS PLLPKMHYI+PL+V Q+DSLRHQAT ++S RLSRA
Sbjct: 485 KMGEIQLAVRFTCSSLLNMMHMYSNPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLSRA 544
Query: 538 EPPLRREVVEYLLDVGSQMWSMRRGKANLARLMRFLNGFGVAWIWFDQVRRWKNPMTTTF 597
EPPLR+EVVEY+LDVGS MWSMRR KAN R+M L+G WFDQ+ WKNP+TT
Sbjct: 545 EPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFDQICNWKNPITTVL 604
Query: 598 VHVFYVIMVLFPQMILATFFFILFGVVIMKFKRRPRHPPHMDIKLSFADKAHPDELDEEF 657
+H+ ++I+V++P++IL T F LF + + ++ RPRHPPHMD +LS AD AHPDELDEEF
Sbjct: 605 IHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEF 664
Query: 658 DTFPSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAMFSIFCL 717
DTFP+++ I+ RYDRLRSIA R+ T+ GDL +Q ERLQSL+ WRDPRATA+F +FCL
Sbjct: 665 DTFPTTRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFCL 724
Query: 718 MAAVVFYIVPLWILLLFAGPFVMRHPRFRIDIPALPQNFLRRLPSKAESLL 768
+AA+V Y+ P ++ L +G +V+RHPRFR +P++P NF RRLP++ + +L
Sbjct: 725 IAAIVLYVTPFQVVALLSGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 775
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437599|ref|XP_004136579.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Cucumis sativus] gi|449501897|ref|XP_004161488.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1046 bits (2704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/769 (63%), Positives = 613/769 (79%), Gaps = 7/769 (0%)
Query: 6 EDFSLKETSPKIGGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVE 65
EDF LKET+P +GGG+V+G ++LTS++DLVEQM++LYVR+V+A+DL VTG+CDPYVE
Sbjct: 7 EDFLLKETNPHLGGGKVTG-DKLTSTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVE 65
Query: 66 VKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMP 125
VK+GNYKGTT FEKK NPEW+QVFAF+K+R+Q+ +E+ VKDK V DF+G++ DM
Sbjct: 66 VKLGNYKGTTRHFEKKSNPEWSQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDMN 125
Query: 126 DIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSG-E 184
+IPKRVPPDSPLAP+W RLE K G + +GELM A+W GTQADEAF AWHSD A VSG +
Sbjct: 126 EIPKRVPPDSPLAPQWYRLEDKKGDKLKGELMLAVWMGTQADEAFPEAWHSDAATVSGTD 185
Query: 185 NIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTV 244
+ N RSKVY+SPKLWYLRVNVIEAQDL P + R PEVF+KA+ GN L+T +S +T+
Sbjct: 186 GLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRYPEVFVKAVLGNQALRTRISQNRTI 245
Query: 245 NPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWY 304
NP WNEDLMFVAAEPF++PLIL+VED++ NK+E LGR +PL +R P + WY
Sbjct: 246 NPLWNEDLMFVAAEPFEEPLILSVEDRVAPNKDETLGRCAIPLQYVDRRLDHKPVNSKWY 305
Query: 305 NLERNIA-NGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVL 363
NLE++I GE+KK+++FASRI +R L+GGYHV DE+T+YSSDLR T K LW IGVL
Sbjct: 306 NLEKHIILEGEKKKEIKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKVLWKQSIGVL 365
Query: 364 ELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPY 423
ELGIL+A+ L+PMK++DGRGTTDAYCVAKY KWVRTRT++DSF PKWNEQYTWEV+DP
Sbjct: 366 ELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSFTPKWNEQYTWEVFDPC 425
Query: 424 TVITLVVFDNCHLHPGGAKD----SRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKM 479
TV+T+ VFDNCHL G SRIGKVRIRLSTLETDR+YTHSYPL+ L PNGVKKM
Sbjct: 426 TVVTIGVFDNCHLLGGDKGGGTKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKKM 485
Query: 480 GEVQLAVRFTCSSFVNLLQTYSQPLLPKMHYINPLSVFQIDSLRHQATHLLSSRLSRAEP 539
GE+ LAVRFTCSS +N++ Y+ PLLPKMHYI+PL+V Q+DSLRHQAT ++S RL+RAEP
Sbjct: 486 GEIHLAVRFTCSSLLNMMHMYTHPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLTRAEP 545
Query: 540 PLRREVVEYLLDVGSQMWSMRRGKANLARLMRFLNGFGVAWIWFDQVRRWKNPMTTTFVH 599
PLR+EVVEY+LDVGS MWSMRR KAN R+M L+G WFDQ+ WKNP+TT +H
Sbjct: 546 PLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFDQICNWKNPITTVLIH 605
Query: 600 VFYVIMVLFPQMILATFFFILFGVVIMKFKRRPRHPPHMDIKLSFADKAHPDELDEEFDT 659
+ ++I+V++P++IL T F LF + + ++ RPRHPPHMD +LS AD AHPDELDEEFDT
Sbjct: 606 ILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDT 665
Query: 660 FPSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAMFSIFCLMA 719
FP+S+ G I+ RYDRLRSIA R+ T+ GDL +Q ERLQSL+ WRDPRATA+F +FCL+A
Sbjct: 666 FPTSRGGDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFCLVA 725
Query: 720 AVVFYIVPLWILLLFAGPFVMRHPRFRIDIPALPQNFLRRLPSKAESLL 768
A+V Y+ P ++ L G +V+RHPRFR +P++P NF RRLP++ + +L
Sbjct: 726 AIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 774
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 768 | ||||||
| TAIR|locus:2095853 | 773 | AT3G57880 "AT3G57880" [Arabido | 0.992 | 0.985 | 0.641 | 6.3e-282 | |
| TAIR|locus:2017627 | 776 | AT1G51570 [Arabidopsis thalian | 0.992 | 0.981 | 0.622 | 3.8e-275 | |
| TAIR|locus:2182305 | 769 | AT5G12970 "AT5G12970" [Arabido | 0.990 | 0.989 | 0.619 | 4.7e-270 | |
| TAIR|locus:2119742 | 774 | AT4G20080 [Arabidopsis thalian | 0.979 | 0.971 | 0.601 | 8.1e-250 | |
| TAIR|locus:2139727 | 1011 | AT4G11610 "AT4G11610" [Arabido | 0.992 | 0.753 | 0.556 | 7.4e-240 | |
| TAIR|locus:2162712 | 1036 | AT5G48060 "AT5G48060" [Arabido | 0.997 | 0.739 | 0.542 | 1.1e-236 | |
| TAIR|locus:2009492 | 1029 | AT1G22610 "AT1G22610" [Arabido | 0.983 | 0.733 | 0.541 | 3.5e-233 | |
| TAIR|locus:2127103 | 1006 | AT4G00700 "AT4G00700" [Arabido | 0.996 | 0.760 | 0.523 | 4.5e-217 | |
| TAIR|locus:2020280 | 1012 | AT1G04150 "AT1G04150" [Arabido | 0.975 | 0.740 | 0.509 | 2.5e-207 | |
| TAIR|locus:2098846 | 972 | AT3G61300 "AT3G61300" [Arabido | 0.964 | 0.762 | 0.514 | 3.8e-204 |
| TAIR|locus:2095853 AT3G57880 "AT3G57880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2709 (958.7 bits), Expect = 6.3e-282, P = 6.3e-282
Identities = 493/768 (64%), Positives = 616/768 (80%)
Query: 6 EDFSLKETSPKIGGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVE 65
EDFSLKET P +GGG++SG ++LTS++DLVEQM++LYVR+V+A++L +TG+CDPYVE
Sbjct: 7 EDFSLKETRPHLGGGKLSG-DKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGSCDPYVE 65
Query: 66 VKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMP 125
VK+GNYKGTT FEKK NPEWNQVFAF+K+R+QA +E VKDK V D IG++ D+
Sbjct: 66 VKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDLIGRVVFDLN 125
Query: 126 DIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGEN 185
++PKRVPPDSPLAP+W RLE + G + +GELM A+WFGTQADEAF AWHSD A VSG +
Sbjct: 126 EVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWFGTQADEAFPEAWHSDAATVSGTD 185
Query: 186 IM-NCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTV 244
+ N RSKVY+SPKLWYLRVNVIEAQDL+P + R PEV++KAI GN L+T VS +T+
Sbjct: 186 ALANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQRYPEVYVKAIVGNQALRTRVSQSRTI 245
Query: 245 NPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWY 304
NP WNEDLMFVAAEPF++PLIL+VED++ NK+E LGR +PL +RF P + WY
Sbjct: 246 NPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYLDRRFDHKPVNSRWY 305
Query: 305 NLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVLE 364
NLE++I EKK+ +FASRI +R L+GGYHV DE+T+YSSDLR T KQLW P IGVLE
Sbjct: 306 NLEKHIMVDGEKKETKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNIGVLE 365
Query: 365 LGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYT 424
LGIL+A L+PMK++DGRGTTDAYCVAKY KW+RTRT++DSF P+WNEQYTWEV+DP T
Sbjct: 366 LGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEVFDPCT 425
Query: 425 VITLVVFDNCHLHPG----GAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMG 480
V+T+ VFDNCHLH G GAKDSRIGKVRIRLSTLETDR+YTHSYPL+ L PNGVKKMG
Sbjct: 426 VVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKKMG 485
Query: 481 EVQLAVRFTCSSFVNLLQTYSQPLLPKMHYINPLSVFQIDSLRHQATHLLSSRLSRAEPP 540
E+ LAVRFTCSS +N++ YSQPLLPKMHYI+PL+V Q+D+LRHQAT ++S RL+RAEPP
Sbjct: 486 EIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLTRAEPP 545
Query: 541 LRREVVEYLLDVGSQMWSMRRGKANLARLMRFLNGFGVAWIWFDQVRRWKNPMTTTFVHV 600
LR+EVVEY+LDVGS MWSMRR KAN R+M L+G WF+Q+ WKNP+TT +H+
Sbjct: 546 LRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPITTVLIHL 605
Query: 601 FYVIMVLFPQMILATFFFILFGVVIMKFKRRPRHPPHMDIKLSFADKAHPDELDEEFDTF 660
++I+VL+P++IL T F LF + I ++ RPRHPPHMD +LS AD AHPDELDEEFDTF
Sbjct: 606 LFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTF 665
Query: 661 PSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAMFSIFCLMAA 720
P+S+ I+ RYDRLRSIA R+ T+ GDL +Q ERLQSL+ WRDPRATA+F +FCL+AA
Sbjct: 666 PTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFCLIAA 725
Query: 721 VVFYIVPLWILLLFAGPFVMRHPRFRIDIPALPQNFLRRLPSKAESLL 768
V+ Y+ P ++ L G + +RHPRFR +P++P NF RRLP++ + +L
Sbjct: 726 VILYVTPFQVVALCIGIYALRHPRFRYKLPSVPLNFFRRLPARTDCML 773
|
|
| TAIR|locus:2017627 AT1G51570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2645 (936.1 bits), Expect = 3.8e-275, P = 3.8e-275
Identities = 480/771 (62%), Positives = 612/771 (79%)
Query: 6 EDFSLKETSPKIGGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVE 65
EDFSLKET P +GGG+V+G ++LT+++DLVEQM++LYVR+V+A++L +TG+CDPYVE
Sbjct: 7 EDFSLKETKPHLGGGKVTG-DKLTTTYDLVEQMQYLYVRVVKAKELPGKDLTGSCDPYVE 65
Query: 66 VKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMP 125
VK+GNY+GTT FEKK NPEWNQVFAF+K+R+QA +E VKDK +V D IG++ D+
Sbjct: 66 VKLGNYRGTTRHFEKKSNPEWNQVFAFSKDRVQASYLEATVKDKDLVKDDLIGRVVFDLN 125
Query: 126 DIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGEN 185
+IPKRVPPDSPLAP+W RLE G + +GELM A+WFGTQADEAF AWHSD A VSG +
Sbjct: 126 EIPKRVPPDSPLAPQWYRLEDGKGQKVKGELMLAVWFGTQADEAFPEAWHSDAATVSGTD 185
Query: 186 IM-NCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTV 244
+ N RSKVY+SPKLWYLRVNVIEAQDL+P + R PEVF+K I GN L+T VS +++
Sbjct: 186 ALANIRSKVYLSPKLWYLRVNVIEAQDLIPSDKGRYPEVFVKVIMGNQALRTRVSQSRSI 245
Query: 245 NPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWY 304
NP WNEDLMFV AEPF++PLIL+VED++ NK+E LGR +PL KRF P + W+
Sbjct: 246 NPMWNEDLMFVVAEPFEEPLILSVEDRVAPNKDEVLGRCAVPLQYLDKRFDYRPVNSRWF 305
Query: 305 NLERN-IANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVL 363
NLE++ I G EKK+++FAS+I +R L+GGYHV DE+T+YSSDLR T KQLW P IGVL
Sbjct: 306 NLEKHVIMEGGEKKEIKFASKIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNIGVL 365
Query: 364 ELGILSAKELLPMKSRDG-RGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDP 422
ELG+L+A L+PMK+++G RGTTDAYCVAKY KW+RTRT++DSF P+WNEQYTWEV+DP
Sbjct: 366 ELGVLNATGLMPMKAKEGGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEVFDP 425
Query: 423 YTVITLVVFDNCHLHPG-----GAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVK 477
TV+T+ VFDNCHLH G G KDSRIGKVRIRLSTLE DR+YTHSYPL+ L P+GVK
Sbjct: 426 CTVVTVGVFDNCHLHGGDKNNGGGKDSRIGKVRIRLSTLEADRVYTHSYPLLVLHPSGVK 485
Query: 478 KMGEVQLAVRFTCSSFVNLLQTYSQPLLPKMHYINPLSVFQIDSLRHQATHLLSSRLSRA 537
KMGE+ LAVRFTCSS +N++ YS PLLPKMHY++PL+V Q+D+LRHQAT ++S+RL+RA
Sbjct: 486 KMGEIHLAVRFTCSSLLNMMYMYSMPLLPKMHYLHPLTVSQLDNLRHQATQIVSTRLTRA 545
Query: 538 EPPLRREVVEYLLDVGSQMWSMRRGKANLARLMRFLNGFGVAWIWFDQVRRWKNPMTTTF 597
EPPLR+EVVEY+LDVGS MWSMRR KAN R+M L+G WF+Q+ WKNP+TT
Sbjct: 546 EPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFEQICVWKNPITTVL 605
Query: 598 VHVFYVIMVLFPQMILATFFFILFGVVIMKFKRRPRHPPHMDIKLSFADKAHPDELDEEF 657
+H+ ++I+V++P++IL T F LF + + ++ RPRHPPHMD +LS AD AHPDELDEEF
Sbjct: 606 IHILFIILVIYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEF 665
Query: 658 DTFPSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAMFSIFCL 717
DTFP+S+ I+ RYDRLRSIA R+ T+ GDL +Q ER QSL+ WRDPRATA+F +FCL
Sbjct: 666 DTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERFQSLLSWRDPRATALFVLFCL 725
Query: 718 MAAVVFYIVPLWILLLFAGPFVMRHPRFRIDIPALPQNFLRRLPSKAESLL 768
+AAV+ YI P ++ G +V+RHPR R +P++P NF RRLP++ + +L
Sbjct: 726 IAAVILYITPFQVVAFAIGLYVLRHPRLRYKLPSVPLNFFRRLPARTDCML 776
|
|
| TAIR|locus:2182305 AT5G12970 "AT5G12970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2597 (919.2 bits), Expect = 4.7e-270, P = 4.7e-270
Identities = 472/762 (61%), Positives = 596/762 (78%)
Query: 7 DFSLKETSPKIGGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEV 66
DF+LKETSPKIG G V+G ++L S++DLVEQM +LYVR+V+A++L VTG+CDPYVEV
Sbjct: 9 DFALKETSPKIGAGSVTG-DKLCSTYDLVEQMHYLYVRVVKAKELPGKDVTGSCDPYVEV 67
Query: 67 KIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMPD 126
K+GNY+G T FEK+ NPEW QVFAF+KER+QA +E++VKDK +V D IG+I D+ +
Sbjct: 68 KLGNYRGMTKHFEKRSNPEWKQVFAFSKERIQASILEVVVKDKDVVLDDLIGRIMFDLNE 127
Query: 127 IPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGENI 186
IPKRVPPDSPLAP+W RLE + G + +GELM A+W GTQADEAFS AWHSD A V E +
Sbjct: 128 IPKRVPPDSPLAPQWYRLEDRHGRKVKGELMLAVWMGTQADEAFSDAWHSDAATVGPEGV 187
Query: 187 MNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNP 246
+ RSKVY+SPKLWY+RVNVIEAQDL+P + + PEV++KA+ GN L+T +S KT+NP
Sbjct: 188 THIRSKVYLSPKLWYVRVNVIEAQDLIPHDKTKFPEVYVKAMLGNQTLRTRISQTKTLNP 247
Query: 247 TWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNL 306
WNEDLMFV AEPF++ LIL VED++ NK+E LGR +PL +R P + W+NL
Sbjct: 248 MWNEDLMFVVAEPFEEALILAVEDRVAPNKDETLGRCAIPLQNVQRRLDHRPLNSRWFNL 307
Query: 307 ERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVLELG 366
E++I E+K+++FASRI LR L+GGYHV DE+T+YSSDLR T KQLW P IG+LE+G
Sbjct: 308 EKHIMVEGEQKEIKFASRIHLRIFLEGGYHVLDESTHYSSDLRPTAKQLWKPSIGLLEVG 367
Query: 367 ILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVI 426
I+SA L+PMKS+DG+GTTDAYCVAKY KW+RTRT+VDSF PKWNEQYTWEV+D TVI
Sbjct: 368 IISAHGLMPMKSKDGKGTTDAYCVAKYGQKWIRTRTIVDSFTPKWNEQYTWEVFDTCTVI 427
Query: 427 TLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAV 486
T FDN H+ G KD RIGKVRIRLSTLE DRIYTHSYPL+ P+G+KK GE+QLAV
Sbjct: 428 TFGAFDNGHIPGGSGKDLRIGKVRIRLSTLEADRIYTHSYPLLVFHPSGIKKTGEIQLAV 487
Query: 487 RFTCSSFVNLLQTYSQPLLPKMHYINPLSVFQIDSLRHQATHLLSSRLSRAEPPLRREVV 546
RFTC S +N+L YSQPLLPKMHYI+PLSV Q+DSLRHQA +++S+RL+RAEPPLR+E+V
Sbjct: 488 RFTCLSLINMLHMYSQPLLPKMHYIHPLSVLQLDSLRHQAMNIVSARLNRAEPPLRKEIV 547
Query: 547 EYLLDVGSQMWSMRRGKANLARLMRFLNGFGVAWIWFDQVRRWKNPMTTTFVHVFYVIMV 606
EY+LDV S MWSMRR KAN R+M L+G WFDQ+ W+NP+TT +HV ++I+V
Sbjct: 548 EYMLDVDSHMWSMRRSKANFFRIMNVLSGLIAVGKWFDQICNWRNPITTILIHVLFIILV 607
Query: 607 LFPQMILATFFFILFGVVIMKFKRRPRHPPHMDIKLSFADKAHPDELDEEFDTFPSSKQG 666
L+P++IL T F LF + I F+ RPRHPPHMD +LS AD HPDELDEEFDTFP+S+
Sbjct: 608 LYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHADAVHPDELDEEFDTFPTSRSS 667
Query: 667 HILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAMFSIFCLMAAVVFYIV 726
I+ RYDRLRSI R+ T+ GDL +Q ER SL+ WRDPRAT +F +FCL+AA+V Y+
Sbjct: 668 EIVRMRYDRLRSIGGRVQTVIGDLATQGERFLSLLSWRDPRATTLFVLFCLIAAIVLYVT 727
Query: 727 PLWILLLFAGPFVMRHPRFRIDIPALPQNFLRRLPSKAESLL 768
P ++ L AG +V+RHPRFR +P++P N RRLP++++SLL
Sbjct: 728 PFQVVALLAGIYVLRHPRFRHKLPSVPLNLFRRLPARSDSLL 769
|
|
| TAIR|locus:2119742 AT4G20080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2406 (852.0 bits), Expect = 8.1e-250, P = 8.1e-250
Identities = 464/771 (60%), Positives = 580/771 (75%)
Query: 7 DFSLKETSPKIGGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEV 66
DFSLKETSP IG G V+G E+LTSSFDLVE M FLY RIVRAR L VN D +V V
Sbjct: 14 DFSLKETSPNIGNGGVNGGEKLTSSFDLVEAMHFLYARIVRARALPVN------DSFVAV 67
Query: 67 KIGNYKGTTIPF-EKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVN-GDFIGKIKIDM 124
KIG+YKG T NPE+++ FAFTK RLQ +E++V+++ N D +GK K D+
Sbjct: 68 KIGSYKGRTKQILNSNPNPEFHETFAFTKTRLQGDILEVVVRNRDNPNEDDIVGKCKFDV 127
Query: 125 PDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGE 184
+IP RVPPDSPLAP+W RLE ++G + GE+M ++W GTQADE FS AWHSD+A V+GE
Sbjct: 128 AEIPTRVPPDSPLAPQWYRLEDRNGVKIGGEIMVSVWIGTQADEVFSEAWHSDSASVTGE 187
Query: 185 NIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNR-NPEVFIKAIFGNVVLKTTVSAKKT 243
N++N RSKVY+SP+LWYLRVNVIEAQDLV NR NPE+ IK GNVV+++ +S K+
Sbjct: 188 NVVNTRSKVYLSPRLWYLRVNVIEAQDLVLLHPNRINPEILIKGFLGNVVVRSRISQTKS 247
Query: 244 VNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIW 303
V+P WNED+MFVA EPFDD LIL+VEDK+G +EECLGR + LS+ +R LP P ++W
Sbjct: 248 VSPVWNEDMMFVAVEPFDDSLILSVEDKVGP-REECLGRCEIKLSQVERRVLPGPVPSLW 306
Query: 304 YNLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVL 363
YN+E GE + RFA RI LR SLDGGYHV DE+ YSSD R++ K LW P IGVL
Sbjct: 307 YNVEHIGETGEGR---RFAGRIHLRVSLDGGYHVLDESIQYSSDYRASAKLLWTPPIGVL 363
Query: 364 ELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPY 423
ELG+L+A L+PMKSR GRGTTDAYCVAKY KWVRTRT+VD+FDPKWNEQYTWEVYDPY
Sbjct: 364 ELGVLNATGLMPMKSRGGRGTTDAYCVAKYGTKWVRTRTIVDTFDPKWNEQYTWEVYDPY 423
Query: 424 TVITLVVFDNCHLHPGGAK-----DSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKK 478
TVIT+ VFDN L G + DSRIGK+RIRLSTL T +IYTHSYPL+ L P+GVKK
Sbjct: 424 TVITIGVFDNLKLFGAGNENRLINDSRIGKIRIRLSTLVTSKIYTHSYPLMVLKPDGVKK 483
Query: 479 MGEVQLAVRFTCSSFVNLLQTYSQPLLPKMHYINPLSVFQIDSLRHQATHLLSSRLSRAE 538
MGE+QLAVRFT +S +++LQ Y++PLLP+MHYI+PLS++Q+DSLRHQATH+L L R E
Sbjct: 484 MGEIQLAVRFTATSMMDMLQKYTEPLLPEMHYISPLSIYQLDSLRHQATHILCINLGRNE 543
Query: 539 PPLRREVVEYLLDVGSQMWSMRRGKANLARLMRFLNGFGVAWIWFDQVRRWKNPMTTTFV 598
P L R+VVEY+LDVGS +WS+RRG+AN RL+ F +G+ AW WFD++ +WK+P+T+ V
Sbjct: 544 PALGRDVVEYMLDVGSNIWSLRRGRANFERLVSFFDGWIDAWKWFDEICKWKSPVTSVLV 603
Query: 599 HVFYVIMVLFPQMILATFFFILFGVVIMKFKRRPRHPPHMDIKLSFADKAHPDELDEEFD 658
H+ + +V P+ + + F + +F RPRHPPHMDIKLS AD A PDELDEEFD
Sbjct: 604 HIVCLFVVFLPKYCVFSMLLYCFVFGLYRFGLRPRHPPHMDIKLSKADSALPDELDEEFD 663
Query: 659 TFPSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAMFSIFCLM 718
FPSSK G +L RYDRLR IA RM+ + GDL +Q ER++SL+ WRDPRAT++F FC +
Sbjct: 664 VFPSSKSGDVLKRRYDRLRGIAGRMMIVLGDLATQGERVKSLLSWRDPRATSLFLTFCFV 723
Query: 719 AAVVFYIVPLWILLLFAGPFVMRHPRFRI-DIPALPQNFLRRLPSKAESLL 768
+ V V + +LL F +VMRHPR R+ DIP++PQNF RRLPS+A+S+L
Sbjct: 724 SCGVICFVSMKLLLTFLAFYVMRHPRVRVFDIPSIPQNFFRRLPSRADSIL 774
|
|
| TAIR|locus:2139727 AT4G11610 "AT4G11610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2312 (818.9 bits), Expect = 7.4e-240, P = 7.4e-240
Identities = 430/772 (55%), Positives = 573/772 (74%)
Query: 7 DFSLKETSPKIGGGRV-SGR-----ERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTC 60
DF+LKETSP +GGGRV GR + TS++DLVE+M FLYVR+V+AR+L + +TG+
Sbjct: 240 DFALKETSPHLGGGRVVGGRVIHKDKTATSTYDLVERMYFLYVRVVKARELPIMDITGSV 299
Query: 61 DPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKI 120
DP+VEV++GNYKG T FEK+ +PEWNQVFAF KER+QA +E++VKDK ++ D++G +
Sbjct: 300 DPFVEVRVGNYKGITRHFEKRQHPEWNQVFAFAKERMQASVLEVVVKDKDLLKDDYVGFV 359
Query: 121 KIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHSDTAV 180
+ D+ D+P RVPPDSPLAP+W RLE K G + +GELM A+W GTQADEAFS AWHSD A+
Sbjct: 360 RFDINDVPLRVPPDSPLAPQWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAAM 419
Query: 181 -VSGENIMNC--RSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTT 237
V ++ RSKVY +P+LWY+RVNVIEAQDL+P + R P+V++KA GN V+KT
Sbjct: 420 PVDCSPAISAVLRSKVYHAPRLWYVRVNVIEAQDLIPTDKTRFPDVYVKAQLGNQVMKTR 479
Query: 238 VSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPL 297
+T+ WNED +FV AEPF+D L+LTVED++ K+E +GR +PL+ KR
Sbjct: 480 PCQARTLGAVWNEDFLFVVAEPFEDHLVLTVEDRVAPGKDEIVGRTYIPLNTVEKRADDH 539
Query: 298 PAAAIWYNLERN-IANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLW 356
A WYNLER I + ++ K +F+ RI LR L+GGYHV DE+T+YSSDLR + + LW
Sbjct: 540 MIHARWYNLERPVIVDVDQLKREKFSMRIHLRVCLEGGYHVLDESTHYSSDLRPSARPLW 599
Query: 357 PPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYT 416
IGVLELGIL+A L PMK+R+GRGT+D +CV KY KWVRTRT+VD+ PK+NEQYT
Sbjct: 600 RQPIGVLELGILNAVGLHPMKTREGRGTSDTFCVGKYGQKWVRTRTMVDNLCPKYNEQYT 659
Query: 417 WEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGV 476
WEV+DP TV+T+ VFDN L G +D +IGK+RIRLSTLET RIYTHSYPL+ L P GV
Sbjct: 660 WEVFDPATVLTVGVFDNGQLGEKGNRDVKIGKIRIRLSTLETGRIYTHSYPLLVLHPTGV 719
Query: 477 KKMGEVQLAVRFTCSSFVNLLQTYSQPLLPKMHYINPLSVFQIDSLRHQATHLLSSRLSR 536
KKMGE+ +AVRFTC SF N+L YS+PLLPKMHY+ P SV Q D LRHQA +++++RL R
Sbjct: 720 KKMGELHMAVRFTCISFANMLYQYSKPLLPKMHYVRPFSVMQQDMLRHQAVNIVAARLGR 779
Query: 537 AEPPLRREVVEYLLDVGSQMWSMRRGKANLARLMRFLNGFGVAWIWFDQVRRWKNPMTTT 596
AEPPLR+E++E++ D S +WSMR+ KAN R+M +G WF + W+NP+TT
Sbjct: 780 AEPPLRKEIIEFMSDTDSHLWSMRKSKANFFRMMTVFSGVIAVGKWFSDICSWRNPITTV 839
Query: 597 FVHVFYVIMVLFPQMILATFFFILFGVVIMKFKRRPRHPPHMDIKLSFADKAHPDELDEE 656
VHV ++++V P++IL T F +F + + ++ RPR+PPHM+ K+S A+ HPDELDEE
Sbjct: 840 LVHVLFLMLVCLPELILPTMFLYMFLIGLWNYRFRPRYPPHMNTKISQAEAVHPDELDEE 899
Query: 657 FDTFPSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAMFSIFC 716
FDTFP+++ ++ RYDRLRS+A R+ T+ GDL +Q ER Q+L+ WRDPRATA+F I C
Sbjct: 900 FDTFPTTRNPDMVRLRYDRLRSVAGRIQTVIGDLATQGERFQALLSWRDPRATAIFVILC 959
Query: 717 LMAAVVFYIVPLWILLLFAGPFVMRHPRFRIDIPALPQNFLRRLPSKAESLL 768
+AA+VF+I P+ I++ AG F MRHPRFR +P++P NF RRLP++ +S+L
Sbjct: 960 FIAAIVFFITPIQIVVALAGFFTMRHPRFRHRLPSVPVNFFRRLPARTDSML 1011
|
|
| TAIR|locus:2162712 AT5G48060 "AT5G48060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2282 (808.4 bits), Expect = 1.1e-236, P = 1.1e-236
Identities = 424/782 (54%), Positives = 575/782 (73%)
Query: 2 TELKEDFSLKETSPKIGGG--RVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGT 59
T+L +DF +K+ + +G + ER T ++DLVEQM +LYVR+V+A++L +TG
Sbjct: 256 TDL-DDFKVKDMNLDLGERWPNPNAGERFTGTYDLVEQMFYLYVRVVKAKELPPGSITGG 314
Query: 60 CDPYVEVKIGNYKGTTIPFEKKLN-PEWNQVFAFTKERLQAISVELLVKDKMIVN-GDFI 117
CDPYVEVK+GNYKG T F++K PEWNQVFAFTKER+Q+ +E+ VKDK + D +
Sbjct: 315 CDPYVEVKLGNYKGRTKIFDRKTTIPEWNQVFAFTKERIQSSVLEVFVKDKETLGRDDIL 374
Query: 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLE--AKDGSRARGELMFAIWFGTQADEAFSSAWH 175
GK+ D+ +IP RVPP+SPLAP+W RLE +G RGE+M A+W GTQADEAF AWH
Sbjct: 375 GKVVFDLNEIPTRVPPNSPLAPQWYRLEDWRGEGKVVRGEIMLAVWMGTQADEAFPEAWH 434
Query: 176 SDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLK 235
+D+A V GE + N RSKVYVSPKLWYLRVNVIEAQD++P RNR P+VF+KA G LK
Sbjct: 435 ADSASVHGEGVFNIRSKVYVSPKLWYLRVNVIEAQDMIPSDRNRLPDVFVKASVGMQTLK 494
Query: 236 TTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFL 295
T++ + KT NP W EDL+FV AEPF++ L+++VED++ +K+E +G++ LP++ KR
Sbjct: 495 TSICSIKTTNPLWKEDLVFVVAEPFEEQLVISVEDRVHTSKDEVIGKITLPMNVFEKRLD 554
Query: 296 PLPAAAIWYNLERN----IANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRST 351
P + W+NL++ + +K+ +F+SRI LR L+GGYHV DE+T Y SD R T
Sbjct: 555 HRPVHSRWFNLDKYGTGVLEPDARRKEHKFSSRIHLRICLEGGYHVMDESTMYISDTRPT 614
Query: 352 MKQLWPPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKW 411
+QLW +G+LE+GIL A L+PMK +DGRG+T+AYCVAKY KWVRTRT++D+ P+W
Sbjct: 615 ARQLWKQPVGMLEIGILGANGLVPMKLKDGRGSTNAYCVAKYGQKWVRTRTILDTLSPRW 674
Query: 412 NEQYTWEVYDPYTVITLVVFDNCHL---HPGGA--KDSRIGKVRIRLSTLETDRIYTHSY 466
NEQYTWEVYDP TVITL VFDN HL G A +D+RIGKVRIRLSTLE +IYTHS+
Sbjct: 675 NEQYTWEVYDPCTVITLGVFDNSHLGSAQSGTADSRDARIGKVRIRLSTLEAHKIYTHSF 734
Query: 467 PLVALLPNGVKKMGEVQLAVRFTCSSFVNLLQTYSQPLLPKMHYINPLSVFQIDSLRHQA 526
PL+ L P+G+KK G++Q++VRFT S N++ Y PLLPKMHY+ P +V Q+D LR+QA
Sbjct: 735 PLLVLQPHGLKKTGDLQISVRFTTLSLANIIYNYGHPLLPKMHYLFPFTVNQVDGLRYQA 794
Query: 527 THLLSSRLSRAEPPLRREVVEYLLDVGSQMWSMRRGKANLARLMRFLNGFGVAWIWFDQV 586
+++S+RL RAEPPLR+EVVEY+LDV S +WSMRR KAN R+M L+G+ + W + V
Sbjct: 795 MNIVSTRLGRAEPPLRKEVVEYMLDVDSHLWSMRRSKANFFRIMSLLSGYFLVGKWLEDV 854
Query: 587 RRWKNPMTTTFVHVFYVIMVLFPQMILATFFFILFGVVIMKFKRRPRHPPHMDIKLSFAD 646
W+ P+T+ V+V + I+V++P++IL T F +F + + F+ RPRHPPHMD+KLS+A+
Sbjct: 855 CNWRYPVTSVLVNVLFFILVMYPELILPTMFLYMFFIGLWNFRSRPRHPPHMDMKLSWAE 914
Query: 647 KAHPDELDEEFDTFPSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDP 706
PDELDEEFDTFP+S+ ++ RYDRLRS+A R+ T+ GD+ +Q ER+QSL+ WRDP
Sbjct: 915 AVGPDELDEEFDTFPTSRSQELVRLRYDRLRSVAGRIQTVVGDIAAQGERIQSLLSWRDP 974
Query: 707 RATAMFSIFCLMAAVVFYIVPLWILLLFAGPFVMRHPRFRIDIPALPQNFLRRLPSKAES 766
RAT++F +FCL A+VV Y +P + L +G + +RHP+FR +P+LP NF +RLPS +S
Sbjct: 975 RATSLFILFCLAASVVLYAMPFKAIALASGLYYLRHPKFRSKLPSLPSNFFKRLPSSTDS 1034
Query: 767 LL 768
LL
Sbjct: 1035 LL 1036
|
|
| TAIR|locus:2009492 AT1G22610 "AT1G22610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2249 (796.7 bits), Expect = 3.5e-233, P = 3.5e-233
Identities = 423/781 (54%), Positives = 573/781 (73%)
Query: 7 DFSLKETSPKIGGG-------RVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGT 59
+F L ETSP + R SG ++ +S++DLVEQM +LYV +V+ARDL V V+G+
Sbjct: 256 EFQLIETSPPLAARMRQSYYYRSSG-DKTSSTYDLVEQMHYLYVSVVKARDLPVMDVSGS 314
Query: 60 CDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDK-MIVNGDFIG 118
DPYVEVK+GNYKG T EK NP W Q+FAF+KERLQ+ +E+ VKDK ++ DF+G
Sbjct: 315 LDPYVEVKLGNYKGLTKHLEKNSNPIWKQIFAFSKERLQSNLLEVTVKDKDLLTKDDFVG 374
Query: 119 KIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRA-RGELMFAIWFGTQADEAFSSAWHSD 177
++ ID+ ++P RVPPDSPLAP+W RLE K G + RGE+M A+W GTQADE+F AWHSD
Sbjct: 375 RVHIDLTEVPLRVPPDSPLAPQWYRLEDKKGMKTNRGEIMLAVWMGTQADESFPDAWHSD 434
Query: 178 TAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTT 237
VS N+ N RSKVY SPKL+YLR++V+EAQDLVP + R P+ +K GN + T
Sbjct: 435 AHRVSHSNLSNTRSKVYFSPKLYYLRIHVMEAQDLVPSDKGRVPDAIVKIQAGNQMRATR 494
Query: 238 VSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPL------SKAG 291
+T+NP W+E+LMFV +EPF+D +I++V+D++G K+E LGR+ +P+ + G
Sbjct: 495 TPQMRTMNPQWHEELMFVVSEPFEDMVIVSVDDRIGPGKDEILGRVFIPVRDVPVRQEVG 554
Query: 292 KRFLPLPAAAIWYNLERNIANGEEKKDVR---FASRICLRFSLDGGYHVFDEATNYSSDL 348
K +P P W+NL+R+ + EE+ + R F+S+I LR ++ GYHV DE+T++SSDL
Sbjct: 555 K--MPDPR---WFNLQRHSMSMEEENEKRKEKFSSKILLRVCIEAGYHVLDESTHFSSDL 609
Query: 349 RSTMKQLWPPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFD 408
+ + K L P IG+LELGILSA+ L+PMK +DGR TD YCVAKY NKWVRTRT++D+
Sbjct: 610 QPSSKHLRKPSIGILELGILSARNLMPMKGKDGR-MTDPYCVAKYGNKWVRTRTLLDALA 668
Query: 409 PKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGA-KDSRIGKVRIRLSTLETDRIYTHSYP 467
PKWNEQYTWEV+DP TVIT+ VFDN H++ GG KD RIGKVR+RLSTLETDR+YTH YP
Sbjct: 669 PKWNEQYTWEVHDPCTVITIGVFDNSHVNDGGDFKDQRIGKVRVRLSTLETDRVYTHFYP 728
Query: 468 LVALLPNGVKKMGEVQLAVRFTCSSFVNLLQTYSQPLLPKMHYINPLSVFQIDSLRHQAT 527
L+ L P G+KK GE+QLA+R+TC+ FVN++ Y +PLLPKMHYI P+ V ID LRHQA
Sbjct: 729 LLVLTPGGLKKNGELQLALRYTCTGFVNMMAQYGRPLLPKMHYIQPIPVRHIDLLRHQAM 788
Query: 528 HLLSSRLSRAEPPLRREVVEYLLDVGSQMWSMRRGKANLARLMRFLNGFGVAWIWFDQVR 587
++++RLSR+EPPLRREVVEY+LDV M+S+RR KAN +R+M L+ + WF+ +
Sbjct: 789 QIVATRLSRSEPPLRREVVEYMLDVDYHMFSLRRSKANFSRIMSLLSSVTLVCKWFNDIC 848
Query: 588 RWKNPMTTTFVHVFYVIMVLFPQMILATFFFILFGVVIMKFKRRPRHPPHMDIKLSFADK 647
W+NP+TT VHV ++I+V +P++IL T F LF + + ++ RPRHPPHMD ++S AD
Sbjct: 849 TWRNPITTCLVHVLFLILVCYPELILPTVFLYLFVIGMWNYRYRPRHPPHMDARVSQADN 908
Query: 648 AHPDELDEEFDTFPSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPR 707
AHPDELDEEFDTFP+S+ I+ RYDRLRS+ R+ T+ GDL +Q ER+Q+L+ WRDPR
Sbjct: 909 AHPDELDEEFDTFPTSRPADIVRMRYDRLRSVGGRVQTVVGDLATQGERIQALLSWRDPR 968
Query: 708 ATAMFSIFCLMAAVVFYIVPLWILLLFAGPFVMRHPRFRIDIPALPQNFLRRLPSKAESL 767
ATA+F +F L+ AV Y+ P ++ + G F++RHPRFR +P++P NF +RLP+K++ L
Sbjct: 969 ATALFIVFALIWAVFIYVTPFQVIAIIIGLFMLRHPRFRSRMPSVPANFFKRLPAKSDML 1028
Query: 768 L 768
L
Sbjct: 1029 L 1029
|
|
| TAIR|locus:2127103 AT4G00700 "AT4G00700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2097 (743.2 bits), Expect = 4.5e-217, P = 4.5e-217
Identities = 410/783 (52%), Positives = 552/783 (70%)
Query: 3 ELKEDFSLKETSPKIGGGR-VSGR-----ERLTS-SFDLVEQMEFLYVRIVRARDLQVNQ 55
+L DFS+KETSP +GGGR V GR ER TS ++DLVE+M+FLYVR+V+ARDL
Sbjct: 225 QLPPDFSVKETSPLLGGGRIVGGRVVRGTERPTSGTYDLVEEMKFLYVRVVKARDLPNKD 284
Query: 56 VTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGD 115
+TG+ DPYV VKIGN+KG T F K +PEWNQVFAF K+ LQ+ +E++VKDK I+ D
Sbjct: 285 LTGSLDPYVVVKIGNFKGVTTHFNKNTDPEWNQVFAFAKDNLQSNFLEVMVKDKDILLDD 344
Query: 116 FIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWH 175
F+G +K D+ ++ RVPPDSPLAP+W RLE K G + E+M A+W GTQADEAF A
Sbjct: 345 FVGIVKFDLREVQSRVPPDSPLAPQWYRLENKRGEKKNYEIMLAVWSGTQADEAFGDATF 404
Query: 176 SDTAVVS-GENIM--NCRSKVYVSPKLWYLRVNVIEAQD-LVPKQRNRNPEVFIKAIFGN 231
SD+ V S NI+ N RSKVY SP+LWYLRV ++EAQD ++ ++R PEVF++ GN
Sbjct: 405 SDSLVDSDSSNIISANLRSKVYHSPRLWYLRVQILEAQDVIIVSDKSRVPEVFVRVKVGN 464
Query: 232 VVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAG 291
+L+T + NP W ++ FV AEPF+D L+L+VED N++E +G+ V+ ++
Sbjct: 465 QMLRTKFPQRSN-NPKWGDEFTFVVAEPFEDNLVLSVEDHTAPNRDEPVGKAVILMNDIE 523
Query: 292 KRFLPLPAAAIWYNLERNIANG---EEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDL 348
KR P W +LE +I++ ++ K V+FA+R+ + LDGGYHVFDE+ SSDL
Sbjct: 524 KRIDDKPFHDRWVHLEDSISDAMDVDKAKKVKFATRLRYKAVLDGGYHVFDESMYNSSDL 583
Query: 349 RSTMKQLWPPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFD 408
R + ++LW P IGVLELGIL+A MK+R+G+GT+D Y VAKY +KWVR+RTV++S +
Sbjct: 584 RPSSRKLWKPAIGVLELGILNANVFHSMKTREGKGTSDTYVVAKYGHKWVRSRTVINSMN 643
Query: 409 PKWNEQYTWEVYDPYTVITLVVFDNCHLHPG--GAK-DSRIGKVRIRLSTLETDRIYTHS 465
PK+NEQYTWEV+DP TV+T+ VFDN H G G K D IGKVRIRLSTL+T R+YTH+
Sbjct: 644 PKYNEQYTWEVFDPATVLTICVFDNAHFAAGDGGNKRDQPIGKVRIRLSTLQTGRVYTHA 703
Query: 466 YPLVALLPNGVKKMGEVQLAVRFTCSSFVNLLQTYSQPLLPKMHYINPLSVFQIDSLRHQ 525
YPL+ L P G+KK GE+ LAVRFTC+S ++L Y++PLLPKMHYI PLS Q ++L+ Q
Sbjct: 704 YPLLVLQPTGLKKRGELHLAVRFTCTSVSSMLMKYTKPLLPKMHYILPLSTNQQEALKMQ 763
Query: 526 ATHLLSSRLSRAEPPLRREVVEYLLDVGSQMWSMRRGKANLARLMRFLNGFGVAWIWFDQ 585
A +++ RL R+EPPLRREVV+YL D SQ++SMRR KAN R +G W W +Q
Sbjct: 764 AINIIIVRLGRSEPPLRREVVDYLTDWKSQLFSMRRSKANFNRFTTVFSGALSVWKWMEQ 823
Query: 586 VRRWKNPMTTTFVHVFYVIMVLFPQMILATFFFILFGVVIMKFKRRPRHPPHMDIKLSFA 645
V WK P+TT VHV Y ++V FP+MIL T F + + + ++ +PR PPHMD KLS+A
Sbjct: 824 VCTWKTPVTTALVHVLYTMLVTFPEMILPTVFLYMAVIGMWNYRFKPRFPPHMDAKLSYA 883
Query: 646 DKAHPDELDEEFDTFPSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRD 705
D + DELDEEFDTFP+ + I+ RYDRLRS+A ++ ++ GD+ +Q ER+Q+L+ WRD
Sbjct: 884 DNVNSDELDEEFDTFPTVRAPDIVKMRYDRLRSVAGKVQSVAGDIAAQGERVQALLSWRD 943
Query: 706 PRATAMFSIFCLMAAVVFYIVPLWILLLFAGPFVMRHPRFRIDIPALPQNFLRRLPSKAE 765
PRATA+F FC + A+ YI P ++ L +G + MRHP+ R IP+ P NF RRLP+ +
Sbjct: 944 PRATAIFVTFCFIIAMALYITPFKLVALLSGYYFMRHPKLRHRIPSAPVNFFRRLPAMTD 1003
Query: 766 SLL 768
S+L
Sbjct: 1004 SML 1006
|
|
| TAIR|locus:2020280 AT1G04150 "AT1G04150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2005 (710.9 bits), Expect = 2.5e-207, P = 2.5e-207
Identities = 400/785 (50%), Positives = 539/785 (68%)
Query: 7 DFSLKETSPKIGG------GRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTC 60
+FSLKET P +GG G S +++ +S++DLVEQM++LYV IV+A+DL V G
Sbjct: 241 EFSLKETKPCLGGTSNGLGGLSSHKDKTSSTYDLVEQMQYLYVNIVKAKDLSV---LG-- 295
Query: 61 DPYVEVKIGNYKGTTIPFEKKL-NPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGK 119
+ EVK+GNY+G T NPEWNQVF F+KER+Q+ VEL VK+ ++ G+
Sbjct: 296 EVVSEVKLGNYRGVTKKVSSNSSNPEWNQVFVFSKERIQSSVVELFVKEGN--KDEYTGR 353
Query: 120 IKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHSDTA 179
+ D+ +IP RVPPDSPLAP+W ++E ++G R GELM ++WFGTQADEAF+ AWHS
Sbjct: 354 VLFDLSEIPTRVPPDSPLAPQWYKIENRNGGRGNGELMVSVWFGTQADEAFAEAWHSKAG 413
Query: 180 VVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRN----RNPEVFIKAIFGNVVLK 235
V E + + +SKVY+SPKLWYLR++VIEAQD+ + R PE+ K G+ +L+
Sbjct: 414 NVHIEELSSIKSKVYLSPKLWYLRISVIEAQDVAIMDKGSSLMRFPELSAKLQVGSQILR 473
Query: 236 TTVSA----KKTVNPTWNEDLMFVAAEPFDDPLILTVEDKL-----GDNKEECLGRLVLP 286
T +++ K NP WNEDLMFV AEPF+D + + VED+L G + +GR+ +P
Sbjct: 474 TAIASAIPTKSFSNPYWNEDLMFVVAEPFEDCVTVVVEDRLNGGAIGGQNDVAVGRVQIP 533
Query: 287 LSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSS 346
+S +R + W++L+ NG RF SRI LR SLDGGYHV DEAT Y+S
Sbjct: 534 ISAVERRTGDTLVGSRWFSLD----NGNNNN--RFGSRIHLRLSLDGGYHVLDEATMYNS 587
Query: 347 DLRSTMKQLWPPVIGVLELGILSAKELLPMKSRDGR--GTTDAYCVAKYANKWVRTRTVV 404
D+R T K+LW P +G+LE+GILSA L+PMK RDG+ G D+YCVAKY KWVRTRTVV
Sbjct: 588 DVRPTAKELWKPQVGLLEIGILSATGLMPMKVRDGKCGGIADSYCVAKYGPKWVRTRTVV 647
Query: 405 DSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGG-AKDSRIGKVRIRLSTLETDRIYT 463
DS PKWNEQYTWEVYDP TV+T+ VFDN ++ ++D RIGKVRIRLSTLET R+YT
Sbjct: 648 DSLCPKWNEQYTWEVYDPCTVVTVGVFDNARVNENNNSRDVRIGKVRIRLSTLETGRVYT 707
Query: 464 HSYPLVALLPNGVKKMGEVQLAVRFTCSSFVNLLQTYSQPLLPKMHYINPLSVFQIDSLR 523
HSYPL+ L P+GVKK GE+ LAVR +C + VN+L Y+ PLLPKMHY PL V ++ LR
Sbjct: 708 HSYPLIVLHPSGVKKTGELHLAVRLSCGNAVNMLHMYALPLLPKMHYTQPLGVHMLERLR 767
Query: 524 HQATHLLSSRLSRAEPPLRREVVEYLLDVGSQMWSMRRGKANLARLMRFLNGFGVAWIWF 583
+Q + +++RLSRAEPPL REVVEY+LD +WSMRR KAN RL+ ++G
Sbjct: 768 YQTLNAVAARLSRAEPPLGREVVEYMLDHDFHVWSMRRSKANFFRLVNVISGLVAVAKLV 827
Query: 584 DQVRRWKNPMTTTFVHVFYVIMVLFPQMILATFFFILFGVVIMKFKRRPRHPPHMDIKLS 643
+ +R W P+ +T + ++ MVLFP+++L V + +F+RR R+PPHMD ++S
Sbjct: 828 EVMRSWSKPVYSTVFVLAFLFMVLFPELLLPCLLLYTAAVGVWRFRRRSRYPPHMDARIS 887
Query: 644 FADKAHPDELDEEFDTFPSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDW 703
A+ PDELDEEFDTFP+S+ ++ RYDR+RSIA R+ T+ GD+ SQ ER+Q+L+ W
Sbjct: 888 HAETVFPDELDEEFDTFPTSRGFDVVRMRYDRVRSIAGRVQTVVGDMASQGERVQALLSW 947
Query: 704 RDPRATAMFSIFCLMAAVVFYIVPLWILLLFAGPFVMRHPRFRIDIPALPQNFLRRLPSK 763
RDPRAT +F +FCL+AAV FY VP+ + + +G + +R PRFR +P+ +F RRLPS+
Sbjct: 948 RDPRATFLFLMFCLLAAVGFYTVPVKLTVAISGLYYLRPPRFRRKLPSRGLSFFRRLPSR 1007
Query: 764 AESLL 768
A+SLL
Sbjct: 1008 ADSLL 1012
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| TAIR|locus:2098846 AT3G61300 "AT3G61300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1975 (700.3 bits), Expect = 3.8e-204, P = 3.8e-204
Identities = 398/773 (51%), Positives = 532/773 (68%)
Query: 7 DFSLKETSPKIGGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEV 66
D+S+KET P +GGG+ R R +S DLVE MEFL+++IV+AR+L +TG+ DPY+EV
Sbjct: 221 DYSIKETKPILGGGK---RAR-SSDHDLVEPMEFLFIKIVKARNLPSMDLTGSLDPYIEV 276
Query: 67 KIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMPD 126
K+GNY G T FEK NP WN+VFAF+K Q+ +E++V DK +V DF+G I+ D+
Sbjct: 277 KLGNYTGKTKHFEKNQNPVWNEVFAFSKSNQQSNVLEVIVMDKDMVKDDFVGLIRFDLNQ 336
Query: 127 IPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGENI 186
IP RV PDSPLAPEW R+ + G GE+M A+WFGTQADEAFS A +SD ++ N
Sbjct: 337 IPTRVAPDSPLAPEWYRVNNEKG----GEIMLAVWFGTQADEAFSDATYSDA--LNAVNK 390
Query: 187 MNCRSKVYVSPKLWYLRVNVIEAQDLV-PKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVN 245
+ RSKVY SP+LWYLRVNVIEAQDLV R R P ++K N V++T S ++N
Sbjct: 391 SSLRSKVYHSPRLWYLRVNVIEAQDLVIVPDRTRLPNPYVKIRLNNQVVRTKPS--HSLN 448
Query: 246 PTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRF---LPLPAAAI 302
P WNE+ VAAEPF+D LI+++ED++ N+EE LG + +P+ KR +P
Sbjct: 449 PRWNEEFTLVAAEPFED-LIISIEDRVAPNREETLGEVHIPIGTIDKRIDDNRTVPNR-- 505
Query: 303 WYNLERNIANGEEKKDVRFAS-RICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWP---P 358
W++L+ E ++ VRFA+ R+ L L+GGYHV DE+T YSSD R +MK+L P
Sbjct: 506 WFSLKT-----ENQRRVRFATTRLHLNVCLEGGYHVLDESTYYSSDFRPSMKELLSHKQP 560
Query: 359 VIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWE 418
GVLELGIL E L + + T DAYCVAKY KWVRTRTV + +P++NEQYTWE
Sbjct: 561 SFGVLELGILRI-EGLNLSQEGKKETVDAYCVAKYGTKWVRTRTVTNCLNPRFNEQYTWE 619
Query: 419 VYDPYTVITLVVFDNCHLHPG-GAK-DSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGV 476
VY+P TVIT+ VFDN ++ G G K D +IGK+R+R+STLE RIY+HSYPL+ L P+G+
Sbjct: 620 VYEPATVITIGVFDNNQINSGNGNKGDGKIGKIRVRISTLEAGRIYSHSYPLLVLRPSGL 679
Query: 477 KKMGEVQLAVRFTCSSFVNLLQTYSQPLLPKMHYINPLSVFQIDSLRHQATHLLSSRLSR 536
KKMGE+ LA+RF+CSS +L Y +PLLPKMHY PL V Q + LR A +L+++RLSR
Sbjct: 680 KKMGELHLAIRFSCSSMFQMLMQYWKPLLPKMHYARPLKVVQQEILRQHAVNLVAARLSR 739
Query: 537 AEPPLRREVVEYLLDVGSQMWSMRRGKANLARLMRFLNGFGVAWIWFDQVRRWKNPMTTT 596
AEPPLR+EVVEY+ D S +WSMR+ +ANL RL +G WF + RWK P+ TT
Sbjct: 740 AEPPLRKEVVEYISDSNSHLWSMRKSRANLFRLSSVFSGLLGTGEWFQDICRWKKPVETT 799
Query: 597 FVHVFYVIMVLFPQMILATFFFILFGVVIMKFKRRPRHPPHMDIKLSFADKAHPDELDEE 656
+H+ ++++V P+MIL LF + + ++ RPR PPHMD +LSFAD HP+EL+EE
Sbjct: 800 AIHIIFLVLVCSPEMILPVMSLCLFMLGVWNYRLRPRQPPHMDTRLSFADNIHPEELNEE 859
Query: 657 FDTFP-SSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAMFSIF 715
FDTFP SS+ I+ RY+RLRSIA+R T+ GD+ Q ER+Q+L+ WRDPRAT++F +
Sbjct: 860 FDTFPFSSQDPGIVKMRYERLRSIASRAQTVVGDIAGQGERVQALLSWRDPRATSIFMVL 919
Query: 716 CLMAAVVFYIVPLWILLLFAGPFVMRHPRFRIDIPALPQNFLRRLPSKAESLL 768
CL++ VV Y+VP + +L AG ++MR PRFR P P NF RRLP+K + +L
Sbjct: 920 CLVSTVVLYVVPFKVFVLLAGLYIMRPPRFRGKTPPGPINFFRRLPAKTDCML 972
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pg.C_1520026 | hypothetical protein (776 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 768 | |||
| pfam08372 | 156 | pfam08372, PRT_C, Plant phosphoribosyltransferase | 2e-72 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 2e-70 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 1e-62 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 2e-53 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 4e-16 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 6e-16 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 9e-16 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 1e-15 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 3e-15 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 6e-15 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 2e-14 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 3e-14 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 6e-12 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 1e-10 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 2e-10 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 1e-09 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 2e-09 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 3e-09 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 4e-09 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 9e-09 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 1e-08 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 3e-08 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 3e-08 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 4e-08 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 4e-08 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 9e-08 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 1e-07 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 1e-07 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 2e-07 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 2e-07 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 2e-07 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 2e-07 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 5e-07 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 7e-07 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 7e-07 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 9e-07 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 1e-06 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 1e-06 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 1e-06 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 2e-06 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 2e-06 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 3e-06 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 4e-06 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 5e-06 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 6e-06 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 6e-06 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 8e-06 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 9e-06 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 9e-06 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 1e-05 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 1e-05 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 1e-05 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 2e-05 | |
| cd08401 | 121 | cd08401, C2A_RasA2_RasA3, C2 domain first repeat p | 2e-05 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 3e-05 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 3e-05 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 4e-05 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 4e-05 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 4e-05 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 5e-05 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 6e-05 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 7e-05 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 7e-05 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 8e-05 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 9e-05 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 1e-04 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 2e-04 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 2e-04 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 3e-04 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 3e-04 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 3e-04 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 3e-04 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 4e-04 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 4e-04 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 5e-04 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 5e-04 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 5e-04 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 5e-04 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 7e-04 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 8e-04 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 0.001 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 0.001 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.001 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 0.001 | |
| cd04010 | 148 | cd04010, C2B_RasA3, C2 domain second repeat presen | 0.001 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 0.002 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 0.002 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 0.003 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 0.003 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 0.003 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 0.003 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.004 |
| >gnl|CDD|192017 pfam08372, PRT_C, Plant phosphoribosyltransferase C-terminal | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 2e-72
Identities = 90/156 (57%), Positives = 120/156 (76%)
Query: 613 LATFFFILFGVVIMKFKRRPRHPPHMDIKLSFADKAHPDELDEEFDTFPSSKQGHILTTR 672
L T F LF + + ++ RPRHPPHMD +LS AD AHPDELDEEFDTFP+S+ ++ R
Sbjct: 1 LPTIFLYLFVIGLWNYRFRPRHPPHMDTRLSHADAAHPDELDEEFDTFPTSRPPDVVRMR 60
Query: 673 YDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAMFSIFCLMAAVVFYIVPLWILL 732
YDRLRS+A R+ T+ GD+ +Q ERLQ+L+ WRDPRATA+F +FCL+AAVV Y+VP ++
Sbjct: 61 YDRLRSVAGRVQTVVGDIATQGERLQALLSWRDPRATAIFVLFCLVAAVVLYVVPFKVVA 120
Query: 733 LFAGPFVMRHPRFRIDIPALPQNFLRRLPSKAESLL 768
L AG + +RHPRFR +P++P NF RRLPS+ +S+L
Sbjct: 121 LLAGFYYLRHPRFRSRMPSVPLNFFRRLPSRTDSML 156
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This domain is found at the C-terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (pfam00168). Length = 156 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 226 bits (579), Expect = 2e-70
Identities = 90/149 (60%), Positives = 111/149 (74%)
Query: 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPF 260
YLRV VIEAQDLVP +NR PEVF+KA GN VL+T S + NP+WNE+LMFVAAEPF
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60
Query: 261 DDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVR 320
+D LIL+VED++G NK+E LGR V+PL+ +R P + W++LER E+KK +
Sbjct: 61 EDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRK 120
Query: 321 FASRICLRFSLDGGYHVFDEATNYSSDLR 349
FASRI LR LDGGYHV DE+T+YSSDLR
Sbjct: 121 FASRIHLRLCLDGGYHVLDESTHYSSDLR 149
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MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 1e-62
Identities = 82/126 (65%), Positives = 100/126 (79%), Gaps = 2/126 (1%)
Query: 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYD 421
+LE+GIL A+ L ++++DGRG+TDAYCVAKY KWVRTRTV DS +P+WNEQYTW VYD
Sbjct: 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYD 60
Query: 422 PYTVITLVVFDNCHLHPGGA--KDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKM 479
P TV+T+ VFDN H A D IGKVRIRLSTLE DR+Y HSYPL++L P+GVKKM
Sbjct: 61 PCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKM 120
Query: 480 GEVQLA 485
GE++ A
Sbjct: 121 GELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 2e-53
Identities = 71/125 (56%), Positives = 90/125 (72%), Gaps = 4/125 (3%)
Query: 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQA 99
+LYVR+V+AR L N + DP VEVK+GNYKG+T E+ NPEWNQVFAF+K+RLQ
Sbjct: 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQG 56
Query: 100 ISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFA 159
++E+ V DK DF+G + D+ ++P RVPPDSPLAP+W RLE K G R GELM A
Sbjct: 57 STLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLA 116
Query: 160 IWFGT 164
+WFGT
Sbjct: 117 VWFGT 121
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-16
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNV---VLKTTVSAKKTVNPTWNEDLMFVAAE 258
LRV VI A++L PK N + ++K G KT V K T+NP WNE F
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKV-VKNTLNPVWNETFTFEVTL 59
Query: 259 PFDDPLILTVEDKLGDNKEECLGRLV 284
P L + V D K++ +G +
Sbjct: 60 PELAELRIEVYDYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 6e-16
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFD 261
LRV VIEA++L K N + ++K G T K T+NP WNE F +P
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60
Query: 262 DPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNL 306
D L + V DK +K++ LG + +PLS+ +W L
Sbjct: 61 DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGE---LWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 9e-16
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQA 99
L V ++ AR+L + G DPYV+V +G K T + LNP WN+ F F ++
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60
Query: 100 ISVELLVKDK-MIVNGDFIGKIKIDMPDIPKR 130
++ + V DK DF+G+++I + ++
Sbjct: 61 DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDS 92
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 1e-15
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNY---KGTTIPFEKKLNPEWNQVFAFTKER 96
L V+I+ AR+L G DPYV+V + K T + LNP WN+ F F
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 97 LQAISVELLVKDK-MIVNGDFIGKIKIDMPDIPKRVPPD 134
+ +E+ V DK DFIG++ I + D+ +
Sbjct: 61 PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHE 99
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 3e-15
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN---VVLKTTVSAKKTVNPTWNEDLMFVAA 257
L V +I A++L PK + + ++K KT V K T+NP WNE F
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKV-VKNTLNPVWNETFEFEVP 59
Query: 258 EPFDDPLILTVEDKLGDNKEECLGRLVLPLSK 289
P L + V DK +++ +G++ +PLS
Sbjct: 60 PPELAELEIEVYDKDRFGRDDFIGQVTIPLSD 91
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 6e-15
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKG----TTIPFEKKLNPEWNQVFAFTKER 96
L V ++ A++L + G DPYV+V +G K T + + LNP WN+ F F
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKV-VKNTLNPVWNETFTFEVTL 59
Query: 97 LQAISVELLVKDK-MIVNGDFIGKIK 121
+ + + V D DFIG++
Sbjct: 60 PELAELRIEVYDYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-14
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWV---RTRTVVDSFDPKWNEQYTWEV 419
L + ++SAK L P D G +D Y + +T+ V ++ +P WNE +T+EV
Sbjct: 1 LRVTVISAKNLPPK---DLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEV 57
Query: 420 YDP-YTVITLVVFDNCHLHPGGAKDSRIGKVR 450
P + + V+D KD IG+V
Sbjct: 58 TLPELAELRIEVYDYDRFG----KDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 3e-14
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWV-RTRTVVDSFDPKWNEQYTWEVYD 421
L + ++ A+ L D G +D Y K +T+ V ++ +P WNE + + V D
Sbjct: 1 LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLD 57
Query: 422 PYT-VITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRI-YTHSYPL 468
P + +T+ V+D +KD +G+V I LS L PL
Sbjct: 58 PESDTLTVEVWD----KDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 6e-12
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN---KWVRTRTVVDSFDPKWNEQYTWE 418
L + I+SA+ L P D G +D Y + +T+ V ++ +P WNE + +E
Sbjct: 1 TLTVKIISARNLPPK---DKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFE 57
Query: 419 VYDPYT-VITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLET 458
V P + + V+D +D IG+V I LS L
Sbjct: 58 VPPPELAELEIEVYD----KDRFGRDDFIGQVTIPLSDLLL 94
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-10
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQA 99
FL V+++RA L + G DP+ +++ N + T K LNPEWN++F F + +
Sbjct: 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHD 61
Query: 100 ISVELLVKDKMIVNG-DFIGKIKIDMPDI 127
+ +E+ V D+ +F+GK+ I + I
Sbjct: 62 V-LEVTVYDEDKDKKPEFLGKVAIPLLSI 89
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-10
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 13/108 (12%)
Query: 367 ILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDP---- 422
++ A++L+P +DG+G++ AY + + RTRT +P WNE+ + V DP
Sbjct: 6 VVDAQDLMP---KDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLS 62
Query: 423 YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTL--ETDRIYTHSYPL 468
V+ + V+++ S +G+VRI ++ ++ + YPL
Sbjct: 63 NLVLEVYVYNDRRSGRRR---SFLGRVRISGTSFVPPSEAVVQR-YPL 106
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-09
Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFT---KERL 97
L V +V A+DL G+ YVE+ K T K LNP WN+ F RL
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRL 61
Query: 98 QAISVELLVKDKM--IVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG--SRAR 153
+ +E+ V + F+G+++I P S + LE K G SR R
Sbjct: 62 SNLVLEVYVYNDRRSGRRRSFLGRVRISG----TSFVPPSEAVVQRYPLE-KRGLFSRVR 116
Query: 154 GEL 156
GE+
Sbjct: 117 GEI 119
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-09
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 379 RDGRGTTDAYCVAKYANKWV-RTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLH 437
RD GT+D Y KY K V +++T+ + +P W+E++T + D + + VFD +
Sbjct: 15 RDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFD----Y 70
Query: 438 PGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489
G D +G + LSTLE ++ L PN + +G + L V T
Sbjct: 71 DRGLTDDFMGSAFVDLSTLELNKPTEVKLKLED--PNSDEDLGYISLVVTLT 120
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-09
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKA--IFGNVVLKT--TVSAKKTVNPTWNEDLMF-VA 256
L V V++A++L P + ++K + G LK T K T+NP +NE F V
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75
Query: 257 AEPFDD-PLILTVEDKLGDNKEECLGRLVLPLS 288
AE ++ L++TV DK + E +G++VL
Sbjct: 76 AEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPD 108
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 4e-09
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 40 FLYVRIVRARDLQVNQV--TGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERL 97
L V +V A+DL G DPY + +G + T LNP+WN F
Sbjct: 2 VLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA 61
Query: 98 QAISVELLVKDKMIVNG-DFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAK 147
Q ++L++ DK G D++G+ I + ++ + + +W L++
Sbjct: 62 QNQLLKLILWDKDRFAGKDYLGEFDIALEEV--FADGKTGQSDKWITLKST 110
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 9e-09
Identities = 41/140 (29%), Positives = 57/140 (40%), Gaps = 29/140 (20%)
Query: 360 IGVLELGILSAKELLPMKSRD-GRGTTDAYCVAKYANKWV--RTRTVVDSFDPKWNEQYT 416
IGVL + I SA+ L K D GT D Y +N+ RT+ D+ +P WNE
Sbjct: 1 IGVLAVTIKSARGL---KGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETK- 56
Query: 417 WEVYDPYTVI-------TLVVFD-NCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468
Y ++ L V+D N KD IG LS+L + + L
Sbjct: 57 ------YILVNSLTEPLNLTVYDFNDKR-----KDKLIGTAEFDLSSLLQNPEQEN---L 102
Query: 469 VALLPNGVKKMGEVQLAVRF 488
L K +GE+ +RF
Sbjct: 103 TKNLLRNGKPVGELNYDLRF 122
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-08
Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 41 LYVRIVRARDLQV-NQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQ---VFAFTKER 96
L VR+V ARDL V ++ + D +VEVK G+ T +K LNP WN F E
Sbjct: 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE 60
Query: 97 LQAISVELLVKDKMIVNG-DFIGKIKIDM 124
LQ +++ V D + D IGK+ ID+
Sbjct: 61 LQDEPLQIRVMDHDTYSANDAIGKVYIDL 89
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-08
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 39 EFLYVRIVRARDLQVNQVTGTCDPYVEV-------KIGNYKGTTIPFEKKLNPEWNQVFA 91
E L V +++AR+L + G DPYV+V K+ K + LNP +N+ F+
Sbjct: 14 ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKK--GTLNPVFNEAFS 71
Query: 92 F--TKERLQAISVELLVKDK-MIVNGDFIGKI 120
F E+L+ +S+ + V DK + + IG++
Sbjct: 72 FDVPAEQLEEVSLVITVVDKDSVGRNEVIGQV 103
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-08
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFD 261
LR +V+EA+DL PK RN + F++ + L+T+V KK+ P WNE F E D
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSV-VKKSCYPRWNEVFEFELMEGAD 60
Query: 262 DPLILTVEDKLGDNKEECLGRLVLPLSK 289
PL + V D +K + LG++V +
Sbjct: 61 SPLSVEVWDWDLVSKNDFLGKVVFSIQT 88
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-08
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEV 419
+G+L++ ++ L RD ++D Y V N+ V+TR + + +P WNE+ T V
Sbjct: 1 LGLLKVRVVRGTNLA---VRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSV 56
Query: 420 YDPYTVITLVVFD 432
+P + L VFD
Sbjct: 57 PNPMAPLKLEVFD 69
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-08
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 10/89 (11%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEV------KIGNYKGTTIPFEKKLNPEWNQVFAFT- 93
+ V I++AR+L+ + GT DPYV+V K K T I ++ LNP +N+ F F
Sbjct: 17 ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVI-KKRTLNPVFNESFIFNI 75
Query: 94 -KERLQAISVELLVKDK-MIVNGDFIGKI 120
ERL+ ++ + V DK + D IGKI
Sbjct: 76 PLERLRETTLIITVMDKDRLSRNDLIGKI 104
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 9e-08
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKERL 97
L + + R+L GT DPYV+ K G YK TI K LNP W++ F E +
Sbjct: 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTI--YKNLNPVWDEKFTLPIEDV 59
Query: 98 -QAISVELLVKDKMIVNGDFIGKIKIDM 124
Q + +++ D+ + + DF+G +D+
Sbjct: 60 TQPLYIKVFDYDRGLTD-DFMGSAFVDL 86
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 361 GVLELGILSAKELLPMKSRD------GRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQ 414
GVL + ++ A++L ++D +G +D Y + + + +++ + ++ +PKWNE
Sbjct: 1 GVLRIHVIEAQDL---VAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEV 57
Query: 415 YTWEVYD-PYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468
Y V + P + + +FD KD +G++ I L ++E PL
Sbjct: 58 YEAVVDEVPGQELEIELFDE-----DPDKDDFLGRLSIDLGSVEKKGFIDEWLPL 107
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 41 LYVRIVRARDLQ------VNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTK 94
L + ++ A+DL V G DPYV V++G + ++ LNP+WN+V+
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVV 62
Query: 95 ERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPK 129
+ + +E+ + D+ DF+G++ ID+ + K
Sbjct: 63 DEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEK 97
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPF 260
+L+V VI A L + F N L+T + KT+NP WN+ F +
Sbjct: 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTH-TIYKTLNPEWNKIFTF-PIKDI 59
Query: 261 DDPLILTVEDKLGDNKEECLGRLVLPL 287
D L +TV D+ D K E LG++ +PL
Sbjct: 60 HDVLEVTVYDEDKDKKPEFLGKVAIPL 86
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVY 420
G L++ ++ A L + D G +D +CV + N ++T T+ + +P+WN+ +T+ +
Sbjct: 1 GFLQVKVIRASGLA---AADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIK 57
Query: 421 DPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRL 453
D + V+ + V+D + +GKV I L
Sbjct: 58 DIHDVLEVTVYDE---DKDKKPEF-LGKVAIPL 86
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 2e-07
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 43 VR--IVRARDLQVNQVTGTCDPYVEVKIG----NYKGTTIPFEKKLNPEWNQVFAFTKER 96
VR +VRAR+LQ G DPY+++K+G N + IP LNP + ++F
Sbjct: 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIP--NTLNPVFGKMFELEATL 59
Query: 97 LQAISVELLVKDKMIVNGD-FIGKIKIDMPD 126
+++ V D ++ D IG+ ID+ D
Sbjct: 60 PGNSILKISVMDYDLLGSDDLIGETVIDLED 90
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKI--GNYKGT---TIPFEKKLNPEWNQVFAF--- 92
L+ I+RA+ L+ G DPYV++ + G K T T K NPE+N+ +
Sbjct: 17 LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGI 76
Query: 93 TKERLQAISVELLVKDKMIVNGDFIGKIKI 122
T+E +Q ++ LLV D+ DF+G+ +I
Sbjct: 77 TEEDIQRKTLRLLVLDEDRFGNDFLGETRI 106
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-07
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFT-KERLQ 98
L VR+VR +L V T + DPYV + +GN K T +K LNP WN+ + +
Sbjct: 3 LLKVRVVRGTNLAVRDFTSS-DPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMA 61
Query: 99 AISVELLVKDKMIVNGDFIGKIKIDMPDI 127
+ +E+ KD + D +G+ +ID+ +
Sbjct: 62 PLKLEVFDKDTFSKD-DSMGEAEIDLEPL 89
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 7e-07
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 202 LRVNVIEAQDLVPK--QRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEP 259
L V V++AQDL+PK Q + + V + F +T K +NP WNE L+F ++P
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELD--FDGQKKRTRTKPKD-LNPVWNEKLVFNVSDP 58
Query: 260 FD---DPLILTV-EDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLER 308
L + V D+ + LGR+ + + P A Y LE+
Sbjct: 59 SRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVP---PSEAVVQRYPLEK 108
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 7e-07
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAF 92
+ + +V A+ L TGT DPYV V++G K T + LNP WN+ F F
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHF 54
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 9e-07
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 22/125 (17%)
Query: 198 KLWY------LRVNVIEAQDLVPKQRNRNPEVFIKAIF----GNVVLKTTVSAKKTVNPT 247
+LWY L V V++A+DL P+ ++K + T + KKT+NP
Sbjct: 8 QLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPE 67
Query: 248 WNEDLMFVAAEPFDDPLI-----LTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAI 302
WN+ + + + L +TV D D + + LG +V+ L+ A L
Sbjct: 68 WNQTFEY--SNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADA-----LLDDEPH 120
Query: 303 WYNLE 307
WY L+
Sbjct: 121 WYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-06
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKER--LQ 98
L ++ ARDL GT DP+V V T +K P WN+VF F
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADS 61
Query: 99 AISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRL 144
+SVE+ D ++ DF+GK+ + + + + W RL
Sbjct: 62 PLSVEVWDWD-LVSKNDFLGKVVFSIQTLQQAKQEEG-----WFRL 101
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 19/116 (16%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYKGTTIPFEKKLNPEWNQVFAFT-- 93
L V +++ARDL +PYV+V + K T +K LNPEWNQ F ++
Sbjct: 18 LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNV 77
Query: 94 -KERLQAISVELLVKDKMIVNG-DFIGKIKIDMPDIPKRVPPDSPL--APEWKRLE 145
+E L+ ++E+ V D DF+G++ ID+ D+ L P W L+
Sbjct: 78 RRETLKERTLEVTVWDYDRDGENDFLGEVVIDL--------ADALLDDEPHWYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEV 419
IG L + I+ ++L P S G +D YC ++ +T+ V D+ +PKWN + V
Sbjct: 14 IGRLMVVIVEGRDLKPCNSN---GKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFV 70
Query: 420 YDPYT-VITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDR 460
D V+ + VFD P D +G+ IR++ + +
Sbjct: 71 KDLEQDVLCITVFDRDFFSP----DDFLGRTEIRVADILKET 108
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 26/135 (19%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGT----TIPFEKKLNPEWNQVFAFTKER 96
L VR++ RDL + + GTCDP+ V + T T +K NP +++ F F
Sbjct: 1 LSVRVLECRDLAL-KSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
Query: 97 LQAI-------------SVELLVK---DKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPE 140
+ EL V+ M+ DF+G+++I + + + +
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQA----- 114
Query: 141 WKRLEAKDGSRARGE 155
W L+ ++ R
Sbjct: 115 WYFLQPREAPGTRSS 129
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQA 99
L V ++ A+ LQ G DPYV ++ + + + NPEWN+ F FT E
Sbjct: 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGW 62
Query: 100 ISV-ELLVK--DKMIVNG-DFIGKIKIDMPDI 127
+L+++ DK + DFIG+ I + +
Sbjct: 63 GGDTKLILRIMDKDNFSDDDFIGEATIHLKGL 94
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKI---GNYKGTTIPFEKKLNPEWNQVFAF---TK 94
L ++I++A +L +GT DP+V++ + +K T K LNP WN+ F F
Sbjct: 18 LTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 77
Query: 95 ERLQAISVELLVKD-KMIVNGDFIGKIKIDMPDI 127
E+LQ + L V D D IG++ + + +
Sbjct: 78 EKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKV 111
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-06
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAI 100
L V IV RDL+ G DPY EV +G+ + T LNP+WN F + L+
Sbjct: 17 LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQD 76
Query: 101 SVELLVKDK-MIVNGDFIGKIKIDMPDIPK 129
+ + V D+ DF+G+ +I + DI K
Sbjct: 77 VLCITVFDRDFFSPDDFLGRTEIRVADILK 106
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-06
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKI----GNYKGTTIPFEKKLNPEWNQVFAF 92
M L V++++AR+LQ +GT DPY +V++ N K + I +K LNPE+++ F F
Sbjct: 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKI-HKKTLNPEFDESFVF 72
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 6e-06
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKK--------LNPEWNQVFAF 92
L VR++RA ++ + T D YVE+ + T EKK +NP WN+ F F
Sbjct: 2 LTVRVLRATNITKGDLLSTPDCYVELWL-----PTASDEKKRTKTIKNSINPVWNETFEF 56
Query: 93 TKERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIP 128
+ +EL V D+ V D +G + D+ +
Sbjct: 57 RIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLK 92
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-06
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 43 VRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAF----TKERLQ 98
VR++ AR L V G DP V+V++G K T + P +N+ F F + + L
Sbjct: 8 VRVIEARQL----VGGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELF 63
Query: 99 AISVELLVKD-KMIVNGDFIGKIKIDMPDI 127
+++ V D + + + IG K+D+ +
Sbjct: 64 DKIIKISVYDSRSLRSDTLIGSFKLDVGTV 93
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 8e-06
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 17/113 (15%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNE--DLMFVAAEP 259
+ + ++E ++L P N + ++K GN K+ V KT+NP W E DL
Sbjct: 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKV-CSKTLNPQWLEQFDLHL----- 55
Query: 260 FDDP---LILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAA-AIWYNLER 308
FDD L + V DK K+E +GR + LS LP ++ LE
Sbjct: 56 FDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSA-----LPREQTHSLELELED 103
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 9e-06
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVY 420
GVL + ++ AK+L K R G+G +D Y + + +T+T+ ++ +PKWN + ++
Sbjct: 1 GVLRVHVVEAKDLAA-KDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIF 59
Query: 421 DP-YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKM 479
++ L+++D A +G+ I L + D S + L K
Sbjct: 60 SAQNQLLKLILWD----KDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKT 115
Query: 480 ----GEVQLAVRFT 489
GE+ L +F+
Sbjct: 116 SVVSGEIHL--QFS 127
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 9e-06
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 368 LSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVY-DPYTVI 426
+ K L PM D G +D Y + N+ +++ + +P+W EQ+ ++ D ++
Sbjct: 7 VEGKNLPPM---DDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQIL 63
Query: 427 TLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468
+ V+D G KD IG+ I LS L ++ ++ L
Sbjct: 64 EIEVWDK----DTGKKDEFIGRCEIDLSALPREQTHSLELEL 101
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 22/117 (18%)
Query: 202 LRVNVIEAQDLVPKQRN--------RNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLM 253
LR++VIEAQDLV K + +P V ++ G K+ V K+ +NP WNE +
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRV--GAQTFKSKV-IKENLNPKWNE--V 57
Query: 254 FVAAEPFDDPLILTVE--DKLGDNKEECLGRLVLPLSKAGK-RFLPLPAAAIWYNLE 307
+ A L +E D+ D K++ LGRL + L K F+ W LE
Sbjct: 58 YEAVVDEVPGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKGFIDE-----WLPLE 108
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 46 VRARDLQVNQVTGTCDPYVEVKIGN--YKGTTIPFEKKLNPEWNQVFAFT--KERLQAIS 101
V ++L G DPYV+ ++GN YK K LNP+W + F ++ Q +
Sbjct: 7 VEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCS--KTLNPQWLEQFDLHLFDDQSQILE 64
Query: 102 VELLVKDKMIVNGDFIGKIKIDMPDIPK 129
+E+ KD +FIG+ +ID+ +P+
Sbjct: 65 IEVWDKD-TGKKDEFIGRCEIDLSALPR 91
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEK------KLNPEWNQVFAFT- 93
L V +++AR L V+G DPYV+V + Y I +K LNP +N+ F F
Sbjct: 17 LTVVVLKARHLPKMDVSGLADPYVKVNL-YYGKKRISKKKTHVKKCTLNPVFNESFVFDI 75
Query: 94 -KERLQAISVELLVKDKMIVN-GDFIGKIKIDMPDIP 128
E L+ ISVE LV D V + IG++ +
Sbjct: 76 PSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKASG 112
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 15/113 (13%)
Query: 42 YVR--IVRARDLQVNQVTGTCDPYVEVKIGNYKG-TTIPFEKKLNPEWNQVFAFT----- 93
Y+R ++ A+DL + + +V+ ++GN T + NP WN+ F
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60
Query: 94 KERLQAISVELLVKDKMIVNGDF-IGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145
++ L +SVE D++ N D +G+ I + DI +RV D P+ W LE
Sbjct: 61 EDHL-ILSVE----DRVGPNKDEPLGRAVIPLNDIERRV-DDRPVPSRWFSLE 107
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
Query: 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWV-RTRTVVDSFDPKWNEQYTWEVY 420
L++ I AK L P D YC + V RT+TV S P + E + +E+
Sbjct: 1 SLKIKIGEAKNLPPRSG--PNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIP 58
Query: 421 DPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMG 480
+ ++ ++D L +DS IGKV I+ L +PL + + + G
Sbjct: 59 RTFRHLSFYIYDRDVLR----RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADS-EVQG 113
Query: 481 EVQLAVRF 488
+V L +R
Sbjct: 114 KVHLELRL 121
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-05
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 374 LPMKSRDGRGTTDAYCVAKYANKWV-RTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFD 432
LP K D G++D YC+ K N+ + RT TV + +P W E+YT + + ++ V D
Sbjct: 12 LPAK--DITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLD 69
Query: 433 NCHLHPGGAKDSRIGKVRI 451
L ++D IGKV +
Sbjct: 70 EDTL----SRDDVIGKVSL 84
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-05
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 209 AQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTV 268
A++L + + P +++ G K+ V ++T NP W E F+ P + L + V
Sbjct: 9 AKNLPLAKSTKEPSPYVELTVGKTTQKSKV-KERTNNPVWEEGFTFLVRNPENQELEIEV 67
Query: 269 EDKLGDNKEEC-LGRLVLPLS 288
+ D+K LG L LPLS
Sbjct: 68 K----DDKTGKSLGSLTLPLS 84
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 4e-05
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIK-AIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPF 260
L V+VI A++L RN + F+K + G V KT KKT+NP WNE
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKT-IKKTLNPVWNESFEVPVPSRV 59
Query: 261 DDPLILTVEDKLGDNKEECLGRLVLPLSK 289
L + V D K++ LG + LS
Sbjct: 60 RAVLKVEVYDWDRGGKDDLLGSAYIDLSD 88
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-05
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKI-------GNYKGTTIPFEKKLNPEWNQVFAFT 93
L V I+ AR+L G+ DP+V+V++ T +K L P +++ F F
Sbjct: 18 LRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN 77
Query: 94 ---KERLQAISVELL-VKDK-MIVNGDFIGKIKIDMPDIPKRVPPDSP 136
++ ++ L VKD ++ + DF G+ + + DIP S
Sbjct: 78 VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVEDTSSA 125
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-05
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 27 RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN---YKGTTIPFEKKLN 83
+L S D Q L V I++A DL + GT DPYV+V + K T K LN
Sbjct: 4 KLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 63
Query: 84 PEWNQVFAF--TKERLQAISVELLVKD-KMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPE 140
P +N+ F F L ++ V D D IG++++ + + + E
Sbjct: 64 PVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDL-----GHVTEE 118
Query: 141 WKRLEA 146
W+ LE+
Sbjct: 119 WRDLES 124
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-05
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI-------GNYKGTTI 76
GR +LT + Q L V + + R+L + DPYV + + K +
Sbjct: 3 GRIQLTIRYSSQRQK--LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVK 60
Query: 77 PFEKKLNPEWNQVFAF--TKERLQAISVELLVKDK---MIVNGDFIGKIKIDMPDI 127
+ LNP +++ F F + E L+ ++++ VK+ + +G++ ID+ D+
Sbjct: 61 --KDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDL 114
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-05
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 12/90 (13%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEV------KIGNYKGTTIPFEKKLNPEWNQVFAFTK 94
L V I+ A++L+ V G DPYV++ K K TTI ++ LNP +N+ F+F
Sbjct: 17 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIK-KRTLNPYYNESFSFEV 75
Query: 95 ERLQAISVELLVK----DKMIVNGDFIGKI 120
Q V L+V D++ N D IGK+
Sbjct: 76 PFEQIQKVHLIVTVLDYDRIGKN-DPIGKV 104
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 7e-05
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYK-GTTIPFEKKLNPEWNQVFAF-TKERLQ 98
LY+RIV ++L +TG+ DPY VK+ N T K LNP W + +
Sbjct: 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFH 61
Query: 99 AISVELLVKDKMIVNGDFIGKIKI 122
+S +L +D + D IGK+ +
Sbjct: 62 TVSFYVLDEDT-LSRDDVIGKVSL 84
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 7e-05
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 21/111 (18%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEV---FIKA-IFG-----NVVLKTTVSAKKTVNPTWNEDL 252
L + +I Q L PK + + +++ I G + KT V NP WNE
Sbjct: 4 LTIKIISGQQL-PKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETF 62
Query: 253 MFVAAEPFDDP----LILTVEDKLGDNKEECLGRLVLPLS--KAGKRFLPL 297
F P L V D+ ++ LG+ LPL + G R +PL
Sbjct: 63 EF----DVTVPELAFLRFVVYDE-DSGDDDFLGQACLPLDSLRQGYRHVPL 108
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-05
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 29/131 (22%)
Query: 43 VRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISV 102
V +++AR L +GT D YV +++G K +T EK +P W + +F L +
Sbjct: 3 VTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFE---LPGLLS 59
Query: 103 ELLVKDKMIVN---------GDFIGKIKIDMPDI------PKRVPPDSPLAPEWKRLEAK 147
+ + + F+G++ I + D+ + W +LE+K
Sbjct: 60 GNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRT---------RWFKLESK 110
Query: 148 DGSRA--RGEL 156
G RGE+
Sbjct: 111 PGKDDKERGEI 121
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 9e-05
Identities = 74/419 (17%), Positives = 136/419 (32%), Gaps = 79/419 (18%)
Query: 29 TSSFDLVEQMEFLYVRIVRARDL--QVNQVTGTCDPYVEVKI-GNYKGTTIPFEKKLNPE 85
+ D + + V+I A L + + GT DPY+ V G T + LNP
Sbjct: 426 IMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPV 485
Query: 86 WNQVFAFTKERL-QAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRL 144
WN+ F +++ L + + +G ++D+ + + + L
Sbjct: 486 WNETFYILLNSFTDPLNLSLYDFNS-FKSDKVVGSTQLDLALLHQNPVKKNELY------ 538
Query: 145 EAKDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVYVSPKLWYLRV 204
E ++ G L + + F F S E + + + + L+V
Sbjct: 539 EFLRNTKNVGRLTYDLRF-------FPVIEDKKELKGSVEPLEDSNTGI--------LKV 583
Query: 205 NVIEAQDLV---PKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFD 261
+ E + L K+ N++ E++ V +T K T +P+WN + + +
Sbjct: 584 TLREVKALDELSSKKDNKSAELY---TNAKEV-YSTGKLKFTNHPSWNLQYNVLVTDRKN 639
Query: 262 DPLILTVEDKLGDNKEECLGRLVLPL------SKAGKRFLPLPAAAIWYNLERNIANGEE 315
+ + D + + L + PL
Sbjct: 640 SSIKVVTFD---VQSGKVIATEGSTLPDLIDRTLDTFLVFPLRN---------------P 681
Query: 316 KKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVLELGILSAKELLP 375
K + F + GG T Y P IG + + + A +L
Sbjct: 682 KGRI-FITNYWKPIYNAGG---SSSKTVYD----------TP--IGAIRVSVRKANDL-- 723
Query: 376 MKSRDGRGTTDAYCVAKYANKWVRTRTVV--DSFDPKWNEQYTWEVYDPYTVITLVVFD 432
++ G +D Y N V+ RT+ + +P WNE V +TL D
Sbjct: 724 -RNEIPGGKSDPYATV-LVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTLECMD 780
|
Length = 1227 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGT-------TIPFEKKLNPEWNQVFAFT 93
L V+++ DL + G DPYV++ + + G T +K LNP+WN+ F F
Sbjct: 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61
Query: 94 KERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIP 128
+ + + + + DF+G++++ + ++P
Sbjct: 62 VNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLP 96
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 202 LRVNVIEAQDLVPKQRN-RNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPF 260
L+V V+ +L + +P V + GN +KT V KK +NP WNE+L P
Sbjct: 4 LKVRVVRGTNLAVRDFTSSDPYVVLT--LGNQKVKTRV-IKKNLNPVWNEELTLSVPNP- 59
Query: 261 DDPLILTVEDK 271
PL L V DK
Sbjct: 60 MAPLKLEVFDK 70
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 18/130 (13%)
Query: 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWV-RTRTVVDSFDPKWNEQYTWEVYD 421
L L IL AK L +GT D YC V RT+T V+ +P W E++ ++
Sbjct: 2 LRLRILEAKNLPS------KGTRDPYCTVSLDQVEVARTKT-VEKLNPFWGEEFVFDDPP 54
Query: 422 PYTV---ITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKK 478
P ++ D +KD I ++ LS L+ + +PL + P+
Sbjct: 55 PDVTFFTLSFYNKDK------RSKDRDIVIGKVALSKLDLGQGKDEWFPLTPVDPDSE-V 107
Query: 479 MGEVQLAVRF 488
G V+L R+
Sbjct: 108 QGSVRLRARY 117
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 202 LRVNVIEAQDLVPKQRN--RNPEVFIKAIFGN--VVLKTTVSAKKTVNPTWNEDLMF-VA 256
+ VN+I+A++L N +P V + ++ + V K TV K+T+NP +NE +F +
Sbjct: 17 ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIP 76
Query: 257 AEPFDD-PLILTVEDKLGDNKEECLGRLVLPLSKAG 291
E + LI+TV DK ++ + +G++ L G
Sbjct: 77 LERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGG 112
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFD 261
L V ++E +DL P N + + + G+ KT V T+NP WN + F +
Sbjct: 17 LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKV-VSDTLNPKWNSSMQFFVKDLEQ 75
Query: 262 DPLILTVEDKLGDNKEECLGRLVLPLSK 289
D L +TV D+ + ++ LGR + ++
Sbjct: 76 DVLCITVFDRDFFSPDDFLGRTEIRVAD 103
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEV-----KIGNYKGTTIPFEKKLNPEWNQVFAFT-- 93
L V I+R +L G DP+V++ K T +K LNPE+N+ F +
Sbjct: 15 LIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIK 74
Query: 94 KERLQAISVELLVKDKMI-VNGDFIG 118
L ++E+ V DK I + D+IG
Sbjct: 75 HSDLAKKTLEITVWDKDIGKSNDYIG 100
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYKGTTIPFEKKLNPEWNQVFAFT-- 93
L V + A++L G DPYV++K+ K T +K LNP WN+ F F
Sbjct: 15 LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74
Query: 94 -KERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKR 130
++ + +S+E+ D+ N DF+G + + ++ K
Sbjct: 75 PADKDRRLSIEVWDWDRTTRN-DFMGSLSFGVSELIKM 111
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 4e-04
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 202 LRVNVIEAQDLVPKQRNR-----NPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVA 256
L V + A+ L K + +P V + +T V K T NP WNE +
Sbjct: 4 LAVTIKSARGL--KGSDIIGGTVDPYVTFSISNRRELARTKV-KKDTSNPVWNETKYILV 60
Query: 257 AEPFDDPLILTVEDKLGDNKEECLGRLVLPLS 288
+PL LTV D K++ +G LS
Sbjct: 61 NS-LTEPLNLTVYDFNDKRKDKLIGTAEFDLS 91
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 11/100 (11%)
Query: 43 VRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAF-TKERLQAIS 101
V + A L G DPYV +K + + L+PE++ F K+ I
Sbjct: 7 VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIK 66
Query: 102 VEL----LVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPL 137
+++ L+ D +F+G+ + + PL
Sbjct: 67 IQVWNSNLLCD------EFLGQATLSADPNDSQTLRTLPL 100
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPF 260
YL V V++A+ L + + ++ GN T + ++T NP WN+ F
Sbjct: 1 YLYVRVVKARGL----PANSNDPVVEVKLGNYKGSTK-AIERTSNPEWNQVFAFSKDRLQ 55
Query: 261 DDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLP-LPAAAIWYNLE 307
L ++V DK K++ LG + LS+ R P P A WY LE
Sbjct: 56 GSTLEVSVWDK-DKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLE 102
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 367 ILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQ 414
+ SA+ L +D G D Y + K + VR+ D+ P+++ Q
Sbjct: 9 VHSAEGL---SKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQ 53
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 5e-04
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMF----- 254
+ LR + +A+DL+ ++ + F + F N +T V K+T++PTW++ L+F
Sbjct: 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVI-KETLSPTWDQTLIFDEVEL 59
Query: 255 ------VAAEPFDDPLI-LTVEDKLGDNKEECLGRLVL-PLSKAGKRFLPLPAAAIWYNL 306
+A P PL+ + + D+ K+E LGR V PL K P W+ +
Sbjct: 60 YGSPEEIAQNP---PLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQ-WFPI 115
Query: 307 ERN 309
+
Sbjct: 116 YKG 118
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 5e-04
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 43 VRIVRARDLQVNQVTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVF--AFTKERLQA 99
+ I +A DL+ + G DPYV V + KG T+ LNP W++V T Q
Sbjct: 5 LHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPN-QK 63
Query: 100 ISVELLVKDKMIVNGD-FIGKIKIDMPDIPKR 130
I++E++ +K V D +G ++I++ D+ K+
Sbjct: 64 ITLEVMDYEK--VGKDRSLGSVEINVSDLIKK 93
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 7e-04
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 202 LRVNVIEAQDL-VPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWN-EDLMFVAAEP 259
L+V V+ A+DL V + + + F++ FG+ KT V KK++NP WN E F +
Sbjct: 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVV-KKSLNPVWNSEWFRFEVDDE 59
Query: 260 --FDDPLILTVED 270
D+PL + V D
Sbjct: 60 ELQDEPLQIRVMD 72
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 8e-04
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAF 92
L+V + A++L + + T PYVE+ +G + E+ NP W + F F
Sbjct: 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTF 53
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 10/133 (7%)
Query: 202 LRVNVIEAQDLVPKQRNRN--PEVFIKAIFGNVVLKT-TVSAKKTVNPTWNEDLMFVAAE 258
LRV+V+EA+DL K R+ + + G KT T+ T+NP WN F
Sbjct: 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIP--NTLNPKWNYWCEFPIFS 60
Query: 259 PFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKD 318
+ L L + DK ++ LG + L + + W L+ K
Sbjct: 61 AQNQLLKLILWDKDRFAGKDYLGEFDIAL-EEVFADGKTGQSDKWITLKSTRP----GKT 115
Query: 319 VRFASRICLRFSL 331
+ I L+FS
Sbjct: 116 SVVSGEIHLQFSW 128
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWV-RTRTVVDSFDPKWNEQYTWEVYD 421
L + ++SA+ L S D G +D + + V +T+T+ + +P WNE + V
Sbjct: 1 LTVDVISAENL---PSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPS 57
Query: 422 PYT-VITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLV 469
V+ + V+D GG D +G I LS LE + + PL
Sbjct: 58 RVRAVLKVEVYD---WDRGGKDDL-LGSAYIDLSDLEPEETTELTLPLD 102
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 13/145 (8%)
Query: 347 DLRSTMKQLWPPVIGVLELGILSAKELLPMKSRDG--RGTTDAYCVAKYANKWV-RTRTV 403
D+ M IGV+E+ I SA+ L K D GT D Y ++++ + +TR
Sbjct: 422 DISQIMAGDSGTAIGVVEVKIKSAEGL---KKSDSTINGTVDPYITVTFSDRVIGKTRVK 478
Query: 404 VDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYT 463
++ +P WNE + + + L ++D D +G ++ L+ L +
Sbjct: 479 KNTLNPVWNETFYILLNSFTDPLNLSLYDF----NSFKSDKVVGSTQLDLALLHQNP--V 532
Query: 464 HSYPLVALLPNGVKKMGEVQLAVRF 488
L L N G + +RF
Sbjct: 533 KKNELYEFLRNTKNV-GRLTYDLRF 556
|
Length = 1227 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.001
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 17/124 (13%)
Query: 48 ARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAF-------TKERLQA- 99
ARDL +G DP+ V N T ++ L+P W+Q F + E +
Sbjct: 10 ARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQN 69
Query: 100 ---ISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVP-PDSPLAPEWKRLEAKDGSRARGE 155
+ VEL +D + +F+G+ + K D P +W + G ++ GE
Sbjct: 70 PPLVVVELFDQDSVG-KDEFLGRSVA--KPLVKLDLEEDFPPKLQWFPI--YKGGQSAGE 124
Query: 156 LMFA 159
L+ A
Sbjct: 125 LLAA 128
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 23/105 (21%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTI-----PFEKKLNPEWNQVFAFTKE 95
L VR++ DL + GTCDPY V + +K NP++++ F F
Sbjct: 2 LSVRVIECSDLALKN--GTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVT 59
Query: 96 RLQAI-------------SVELLVK---DKMIVNGDFIGKIKIDM 124
+ +EL V M F+G+++I +
Sbjct: 60 IDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPL 104
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSF-DPKWNEQYTW---E 418
L + ++ A++L+P D + + A+ N+ +RTR +P WNE+ + E
Sbjct: 2 LRVTVIEAQDLVPS---DKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAE 58
Query: 419 VYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLE 457
++ + ++++ G KD +G+ I L+ +E
Sbjct: 59 PFEDHLILSVED------RVGPNKDEPLGRAVIPLNDIE 91
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 23/108 (21%)
Query: 202 LRVNVIEAQDLVPK-QRNRNPEVFIKAIFG--NVVLKTTVSAKKTVNPTWNEDLMFVAAE 258
L V V+E +DL K +P + + +T V KKT NP ++E F
Sbjct: 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVK-KKTNNPRFDEAFYFELTI 59
Query: 259 PFD-------------DPLILTVE----DKLGDNKEECLGRLVLPLSK 289
F + L VE + + + LG + +PL
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGD--DFLGEVRIPLQG 105
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.003
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDP 422
+ + ++ A+ L+ ++D GT+D Y + RT+T+ + +P WNE++ +E ++
Sbjct: 3 ISITVVCAQGLI---AKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS 59
Query: 423 YTVITLVVFD 432
I + V+D
Sbjct: 60 SDRIKVRVWD 69
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 15/77 (19%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIK-------AIFGNVVLKTTVSAKKTVNPTWNEDLMF 254
L + +I A+DL +N +F K I + T V NPTWNE L F
Sbjct: 2 LEITIISAEDL------KNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRF 55
Query: 255 V--AAEPFDDPLILTVE 269
L LT+E
Sbjct: 56 PLDERLLQQGRLALTIE 72
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.003
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIP-FEKKLNPEWNQVFAF--TKERL 97
L V +++AR+L + DPY ++IG T F +PEW++ F T+++
Sbjct: 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKK 62
Query: 98 QAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGEL 156
+ V + DK D IG ++D+ K D +W E R GE+
Sbjct: 63 PILKVAVFDDDKRKP--DLIGDTEVDLSPALKEGEFD-----DW--YELTLKGRYAGEV 112
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.003
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 13/50 (26%)
Query: 385 TDAYCVAKYANKWVRTRTVVDSFDPKWNE-------------QYTWEVYD 421
TD Y + + RT + ++ +P+WN + +EV+D
Sbjct: 48 TDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWD 97
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 25/89 (28%), Positives = 37/89 (41%)
Query: 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPF 260
YL + + ++L N + F+K + T KKT+NP WNE+
Sbjct: 1041 YLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRV 1100
Query: 261 DDPLILTVEDKLGDNKEECLGRLVLPLSK 289
D L + V D K + LG + LSK
Sbjct: 1101 KDVLTINVNDWDSGEKNDLLGTAEIDLSK 1129
|
Length = 1227 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 768 | |||
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 100.0 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.97 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.96 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.94 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.92 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.89 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.89 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.89 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.87 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.87 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.86 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.86 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.85 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.83 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.83 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.83 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.82 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.81 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.81 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.81 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.81 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.81 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.8 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.8 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.79 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.79 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.79 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.79 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.79 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.79 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.78 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.78 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.78 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.78 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.77 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.77 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.77 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.77 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.77 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.77 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.76 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.76 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.76 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.76 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.76 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.76 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.76 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.75 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.75 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.75 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.75 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.75 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.75 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.75 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.75 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.75 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.74 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.74 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.74 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.74 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.74 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.74 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.74 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.74 | |
| PF04842 | 683 | DUF639: Plant protein of unknown function (DUF639) | 99.74 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.74 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.74 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.74 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.74 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.73 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.73 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.73 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.73 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.73 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.73 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.73 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.73 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.72 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.72 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.72 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.72 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.71 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.71 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.71 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.71 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.71 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.71 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.7 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.7 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.7 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.7 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.7 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.7 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.7 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.7 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.7 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.69 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.69 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.69 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.69 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.69 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.69 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.69 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.69 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.69 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.69 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.69 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.68 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.68 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.67 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.67 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.67 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.67 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.67 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.67 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.67 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.67 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.67 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.66 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.66 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.66 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.66 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.66 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.66 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.66 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.66 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.65 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.65 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.65 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.65 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.64 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.64 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.64 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.64 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.64 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.63 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.63 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.63 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.63 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.63 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.63 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.63 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.63 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.63 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.63 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.63 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.63 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.62 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.62 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.62 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.62 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.62 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.62 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.62 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.62 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.61 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.61 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.61 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.61 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.6 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.6 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.59 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.59 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.59 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.59 | |
| PLN03008 | 868 | Phospholipase D delta | 99.59 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.59 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.58 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.58 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.58 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.58 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.57 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.57 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.57 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.57 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.57 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.56 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.56 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.56 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.56 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.56 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.56 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.56 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.54 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.53 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.53 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.52 | |
| PLN03008 | 868 | Phospholipase D delta | 99.52 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.52 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.51 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.51 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.5 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.5 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.5 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.49 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.46 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.44 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.43 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.43 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.42 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.39 | |
| PF06398 | 359 | Pex24p: Integral peroxisomal membrane peroxin; Int | 99.39 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.37 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.32 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.28 | |
| PLN02270 | 808 | phospholipase D alpha | 99.19 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.18 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.17 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.17 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.16 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.15 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.13 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.11 | |
| PLN02270 | 808 | phospholipase D alpha | 99.03 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 99.02 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 99.01 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.99 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.97 | |
| PF11696 | 642 | DUF3292: Protein of unknown function (DUF3292); In | 98.95 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 98.94 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.92 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.91 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.9 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.89 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.87 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.86 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.83 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.81 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.79 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.79 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.75 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.74 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.73 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.69 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.59 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.57 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 98.48 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.45 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.37 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 98.33 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.32 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.19 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 98.07 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.9 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.64 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.59 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.5 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.38 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 97.34 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.11 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.09 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.84 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 96.42 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 96.29 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 95.53 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.36 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.2 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.17 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 95.12 | |
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 95.04 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 94.76 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 94.66 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 94.61 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 94.02 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 93.98 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 93.97 | |
| PF02453 | 169 | Reticulon: Reticulon; InterPro: IPR003388 Eukaryot | 93.6 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 93.59 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 93.06 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 92.91 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 92.88 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 92.6 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 92.04 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 91.42 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 90.84 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 90.68 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 88.72 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 87.49 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 86.68 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 86.61 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 82.55 | |
| KOG1329 | 887 | consensus Phospholipase D1 [Lipid transport and me | 81.73 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 80.78 | |
| PF11696 | 642 | DUF3292: Protein of unknown function (DUF3292); In | 80.54 |
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=321.70 Aligned_cols=156 Identities=59% Similarity=1.034 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCcccccccCCCCCCCccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004208 613 LATFFFILFGVVIMKFKRRPRHPPHMDIKLSFADKAHPDELDEEFDTFPSSKQGHILTTRYDRLRSIAARMVTLNGDLDS 692 (768)
Q Consensus 613 lp~~~l~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~ 692 (768)
+|.+|++++++++|||..||++|.|+|.++|+++..++||+|||+|++|++++.+.+++||++|++++++|||++|++|+
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At 80 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVAT 80 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHhHHhhhhhhheecccCCCccCCCCCchhHHHhcCCCcccCCC
Q 004208 693 QLERLQSLIDWRDPRATAMFSIFCLMAAVVFYIVPLWILLLFAGPFVMRHPRFRIDIPALPQNFLRRLPSKAESLL 768 (768)
Q Consensus 693 ~~e~~~~l~~w~~p~~t~~~~~~l~~~~~v~~~vP~r~i~l~~g~~~~r~P~~r~~~~~~~~~~~~rlPs~~~~~~ 768 (768)
++||++|+++|+||.+|++++++|+++++++|++|+|+++++||+|++|||++|.++|+.+.|||+||||++|+||
T Consensus 81 ~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs~~d~~l 156 (156)
T PF08372_consen 81 QGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPSRSDSML 156 (156)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCCchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=269.22 Aligned_cols=226 Identities=29% Similarity=0.418 Sum_probs=193.1
Q ss_pred cCCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEEe--ccC
Q 004208 23 SGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTK--ERL 97 (768)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~~--~~~ 97 (768)
.|...+++.||. +...|.|+|++|++|+..|..|.+||||++++.+ .+.+|++.++|+||+|||+|.|.+ .++
T Consensus 153 ~G~l~fsl~Yd~--~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l 230 (421)
T KOG1028|consen 153 VGNLQFSLQYDF--ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEEL 230 (421)
T ss_pred eeeEEEEEEecc--cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHh
Confidence 346788999997 4689999999999999999778899999999986 468999999999999999999995 356
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC--CccceEEEEEEEEcccCCccccccc
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG--SRARGELMFAIWFGTQADEAFSSAW 174 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~i~~~~~~d~~~~~~~ 174 (768)
....|.+.|||+|++ ++++||++.++|..+..... ...|.+|..... ....|+|+++++|.+.
T Consensus 231 ~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~-----~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~--------- 296 (421)
T KOG1028|consen 231 SNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLST-----TLFWKDLQPSSTDSEELAGELLLSLCYLPT--------- 296 (421)
T ss_pred ccCEEEEEEEecCCcccccEEEEEEecCcccccccc-----ceeeeccccccCCcccccceEEEEEEeecC---------
Confidence 789999999999999 99999999999998876632 468999987632 1233899999999743
Q ss_pred cccccccccccccccccceeecCCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---eEEeeecccCCCCCCccc
Q 004208 175 HSDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIF--GN---VVLKTTVSAKKTVNPTWN 249 (768)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~l--g~---~~~~T~~i~~~t~nP~wn 249 (768)
.+.|+|.|++|++|..++..+.+||||++.+ +. .+.+|.+.++ ++||+||
T Consensus 297 ------------------------~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~n 351 (421)
T KOG1028|consen 297 ------------------------AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVFN 351 (421)
T ss_pred ------------------------CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCccc
Confidence 3579999999999999999999999999999 22 3567777776 9999999
Q ss_pred ceEEEEecCC--CCCcEEEEEEeccCCCCCceeEEEEEeccc
Q 004208 250 EDLMFVAAEP--FDDPLILTVEDKLGDNKEECLGRLVLPLSK 289 (768)
Q Consensus 250 e~f~f~~~~~--~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~ 289 (768)
|+|.|.+... ....+.|+|||+|..+++++||.+.++...
T Consensus 352 esf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 352 ETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred ccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 9999987643 345799999999999999999999998764
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=269.68 Aligned_cols=398 Identities=19% Similarity=0.227 Sum_probs=299.5
Q ss_pred cccccEEEEEEEEeecCCCCC--CCCCCCcEEEEEECC-eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCC
Q 004208 35 VEQMEFLYVRIVRARDLQVNQ--VTGTCDPYVEVKIGN-YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMI 111 (768)
Q Consensus 35 ~~~~~~L~V~i~~a~~L~~~d--~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~ 111 (768)
....|+|.|+|.+|++|...| ..+..|||+.+.+.+ ...+|++++++.||+|||+|++.+... ++.|.++|||.+.
T Consensus 432 ~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~ 510 (1227)
T COG5038 432 GTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNS 510 (1227)
T ss_pred CCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEeccc
Confidence 346899999999999999888 689999999999877 567999999999999999999999988 7899999999888
Q ss_pred C-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcccCCccccccccccccccccccccccc
Q 004208 112 V-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCR 190 (768)
Q Consensus 112 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 190 (768)
. +|+.+|++.++|..|....... .+-+.+. .+.+..|+|.+++.|.+..+....... +.+.
T Consensus 511 ~~sd~vvG~~~l~L~~L~~~~~~~----ne~~e~~--~~~k~vGrL~yDl~ffp~~e~k~~~~~-------s~e~----- 572 (1227)
T COG5038 511 FKSDKVVGSTQLDLALLHQNPVKK----NELYEFL--RNTKNVGRLTYDLRFFPVIEDKKELKG-------SVEP----- 572 (1227)
T ss_pred cCCcceeeeEEechHHhhhccccc----cceeeee--ccCccceEEEEeeeeecccCCcccccc-------ccCC-----
Confidence 8 9999999999999987664322 2233332 234467999999998876543211100 0000
Q ss_pred cceeecCCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEeeecccCCCCCCcccceEEEEecCCCCCcEEEEEE
Q 004208 191 SKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNV-VLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVE 269 (768)
Q Consensus 191 ~~~~~~p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~-~~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~ 269 (768)
......|++.+++.++++|..... .....++++++.++ .+.|+.++. +.+|.||+++...+.+.....+.+.++
T Consensus 573 ---~ed~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~keV~st~~~k~-t~~~~wn~~~~~~v~~~~ns~~~~~~~ 647 (1227)
T COG5038 573 ---LEDSNTGILKVTLREVKALDELSS-KKDNKSAELYTNAKEVYSTGKLKF-TNHPSWNLQYNVLVTDRKNSSIKVVTF 647 (1227)
T ss_pred ---cccCCcceeEEEeeccccccCccc-cccceeEEEEecceEEeccceeee-ccCCceeeecceEeccCcceeEEEEec
Confidence 001235789999999999975432 22233488888665 555577776 999999999999998888888999998
Q ss_pred eccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccCccCccccccccccceEEEEEecCCCcccccCcccccCccc
Q 004208 270 DKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLR 349 (768)
Q Consensus 270 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~~~~~~~~~~~~~~~~~~~ 349 (768)
|.. ..+.+|....+|.++.. .......||++..+ .|+|.+...+.+-+...+.
T Consensus 648 d~~---~g~~i~~~~~~l~~li~---~t~dt~~~f~~~~~------------kg~I~~t~~W~Pi~~~~~~--------- 700 (1227)
T COG5038 648 DVQ---SGKVIATEGSTLPDLID---RTLDTFLVFPLRNP------------KGRIFITNYWKPIYNAGGS--------- 700 (1227)
T ss_pred ccc---cCceeccccccchHhhh---ccccceEEEEcCCC------------cceEEEEeccceeeccccc---------
Confidence 853 45688988888888773 34456789998865 4889888877543321111
Q ss_pred cccccCCCCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-eeeeeccccCCCCCccccEEEEEEeCCCcEEEE
Q 004208 350 STMKQLWPPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-KWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITL 428 (768)
Q Consensus 350 ~~~~~l~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v 428 (768)
.+...+..++|.++|.|..|.+|... ...+++|||+++.+++ .++||-....++||.||+....++..+.+.+.+
T Consensus 701 -~s~~~~~~pIg~irv~v~~andl~n~---i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r~~l 776 (1227)
T COG5038 701 -SSKTVYDTPIGAIRVSVRKANDLRNE---IPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTL 776 (1227)
T ss_pred -cceeeecCccceEEEEeehhhccccc---ccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCccEEee
Confidence 11222357899999999999999863 7788999999999987 468999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCceEEEEEeccccccC----ce---eeeeEeeeecCCCCcccccEEEEEEEEEec
Q 004208 429 VVFDNCHLHPGGAKDSRIGKVRIRLSTLETD----RI---YTHSYPLVALLPNGVKKMGEVQLAVRFTCS 491 (768)
Q Consensus 429 ~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~----~~---~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 491 (768)
+++|....+ .|..||.+.|+++++... .. ++..-+.......|.+..|++.+..+|-+.
T Consensus 777 ~~~~~~~sg----ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~ 842 (1227)
T COG5038 777 ECMDYEESG----DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPA 842 (1227)
T ss_pred eeecchhcc----ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEee
Confidence 999999865 899999999999998762 11 111111111111244556899999888543
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=239.92 Aligned_cols=215 Identities=26% Similarity=0.405 Sum_probs=178.8
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEeeecccCCCCCCcccceEEEEecC--CCCCcEEEEEEeccC
Q 004208 199 LWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG---NVVLKTTVSAKKTVNPTWNEDLMFVAAE--PFDDPLILTVEDKLG 273 (768)
Q Consensus 199 ~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg---~~~~~T~~i~~~t~nP~wne~f~f~~~~--~~~~~L~i~V~d~d~ 273 (768)
...|.|+|++|++|+.+|..|.+||||++++. ..+.+|++.++ ++||.|||+|.|.+.. .....|.+.|||.|.
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 34699999999999999977789999999993 46789999997 9999999999999643 356789999999999
Q ss_pred CCCCceeEEEEEeccccccccCCCCCCceeEEcccCccCccccccccccceEEEEEecCCCcccccCcccccCccccccc
Q 004208 274 DNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMK 353 (768)
Q Consensus 274 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 353 (768)
++++++||++.++|..+... .....|.+|.......+ ...|+|.+.+++
T Consensus 245 fsr~~~iGev~~~l~~~~~~----~~~~~w~~l~~~~~~~~-----~~~gel~~sL~Y---------------------- 293 (421)
T KOG1028|consen 245 FSRHDFIGEVILPLGEVDLL----STTLFWKDLQPSSTDSE-----ELAGELLLSLCY---------------------- 293 (421)
T ss_pred cccccEEEEEEecCcccccc----ccceeeeccccccCCcc-----cccceEEEEEEe----------------------
Confidence 99999999999998887632 23677999988642221 122899998885
Q ss_pred cCCCCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe--cC---eeeeeccccCCCCCccccEEEEEEeC--C-CcE
Q 004208 354 QLWPPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKY--AN---KWVRTRTVVDSFDPKWNEQYTWEVYD--P-YTV 425 (768)
Q Consensus 354 ~l~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--g~---~~~~T~~~~~t~nP~wne~~~~~v~~--~-~~~ 425 (768)
.+..|.|+|.|++|++|..+ +..+.+||||++.+ +. .+.+|.+.+++.||+|||+|.|.|.. . ...
T Consensus 294 ---~p~~g~ltv~v~kar~L~~~---~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~ 367 (421)
T KOG1028|consen 294 ---LPTAGRLTVVVIKARNLKSM---DVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVS 367 (421)
T ss_pred ---ecCCCeEEEEEEEecCCCcc---cCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeE
Confidence 24567899999999999986 67889999999888 33 34889999999999999999998873 2 348
Q ss_pred EEEEEEeCCCCCCCCCCCCceEEEEEeccc
Q 004208 426 ITLVVFDNCHLHPGGAKDSRIGKVRIRLST 455 (768)
Q Consensus 426 l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~ 455 (768)
|.|+|||++.++ ++++||++.+....
T Consensus 368 l~l~V~d~d~~~----~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 368 LELTVWDHDTLG----SNDLIGRCILGSDS 393 (421)
T ss_pred EEEEEEEccccc----ccceeeEEEecCCC
Confidence 999999999976 77799999998775
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-23 Score=233.50 Aligned_cols=412 Identities=21% Similarity=0.256 Sum_probs=288.6
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCce
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDF 116 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~ 116 (768)
.|.+.+++.++++|.... .....-++++++.++ ...|+.++.+.+|.||+.+...+.+.....+.+.++|.. ..+.
T Consensus 578 ~GI~k~tl~~~~~l~~~~-~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~--~g~~ 654 (1227)
T COG5038 578 TGILKVTLREVKALDELS-SKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ--SGKV 654 (1227)
T ss_pred cceeEEEeeccccccCcc-ccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccc--cCce
Confidence 489999999999996432 122223388888875 567788999999999999999999887889999999876 5678
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcccCCccccccccccccccccccccccccceeec
Q 004208 117 IGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVYVS 196 (768)
Q Consensus 117 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (768)
+|+...+|.++..... ....||++.. +.|+|.++.++.+..... ...+..+..
T Consensus 655 i~~~~~~l~~li~~t~----dt~~~f~~~~-----~kg~I~~t~~W~Pi~~~~------------------~~~s~~~~~ 707 (1227)
T COG5038 655 IATEGSTLPDLIDRTL----DTFLVFPLRN-----PKGRIFITNYWKPIYNAG------------------GSSSKTVYD 707 (1227)
T ss_pred eccccccchHhhhccc----cceEEEEcCC-----CcceEEEEeccceeeccc------------------cccceeeec
Confidence 8988899988866532 2478999874 348899887665422110 012334456
Q ss_pred CCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCCC
Q 004208 197 PKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN-VVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDN 275 (768)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~-~~~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~ 275 (768)
+..|.++|.|..|.++......+++|||+++.+++ .++||-.... +.||.|++....++..+ .+.+.+.++|.+..+
T Consensus 708 ~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~~~k~rti~~~~-~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sg 785 (1227)
T COG5038 708 TPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSS-TLNPIWNEILYVPVTSK-NQRLTLECMDYEESG 785 (1227)
T ss_pred CccceEEEEeehhhcccccccCcccccceEEEecceeEEEEecccC-ccccceeeeEEEEecCC-ccEEeeeeecchhcc
Confidence 77899999999999999888889999999999976 5778877776 99999999988888775 445889999999999
Q ss_pred CCceeEEEEEeccccccccCCCCC--------------------------CceeEEcccCccC----------cc-----
Q 004208 276 KEECLGRLVLPLSKAGKRFLPLPA--------------------------AAIWYNLERNIAN----------GE----- 314 (768)
Q Consensus 276 ~d~~lG~~~i~l~~l~~~~~~~~~--------------------------~~~w~~L~~~~~~----------g~----- 314 (768)
.|..+|++.++++++..+.++... ..+.|+....... ++
T Consensus 786 ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~ 865 (1227)
T COG5038 786 DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSE 865 (1227)
T ss_pred ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhh
Confidence 999999999999988753211100 0011110000000 00
Q ss_pred -------c-------------------c-cc--------------ccccce--------------EEEEEecCC-Ccccc
Q 004208 315 -------E-------------------K-KD--------------VRFASR--------------ICLRFSLDG-GYHVF 338 (768)
Q Consensus 315 -------~-------------------~-~~--------------~~~~g~--------------i~l~v~~~~-~~~~~ 338 (768)
. . .+ +..+|- +++.+.++. +++..
T Consensus 866 ~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i 945 (1227)
T COG5038 866 KRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQI 945 (1227)
T ss_pred hhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCcee
Confidence 0 0 00 000111 122222222 11110
Q ss_pred cCcc-------------------ccc------------Ccc-------------------------------------cc
Q 004208 339 DEAT-------------------NYS------------SDL-------------------------------------RS 350 (768)
Q Consensus 339 ~~~~-------------------~~~------------~~~-------------------------------------~~ 350 (768)
..+. .++ ++- .|
T Consensus 946 ~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tP 1025 (1227)
T COG5038 946 VSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTP 1025 (1227)
T ss_pred eccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEee
Confidence 0000 000 000 00
Q ss_pred ccccCC----CCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeC-CCc
Q 004208 351 TMKQLW----PPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYD-PYT 424 (768)
Q Consensus 351 ~~~~l~----~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~-~~~ 424 (768)
....+. -...|.|.|.+.+|.||+.. |.+|.+||||++.++++ .++|+++++++||.|||.+..+|.. ..+
T Consensus 1026 v~~~l~~~emv~nsG~l~I~~~~~~nl~~~---d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D 1102 (1227)
T COG5038 1026 VPVKLPPVEMVENSGYLTIMLRSGENLPSS---DENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKD 1102 (1227)
T ss_pred cccccCcceeecccCcEEEEEeccCCCccc---ccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccc
Confidence 000000 12468999999999999994 78899999999999886 7999999999999999999999985 567
Q ss_pred EEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEEe
Q 004208 425 VITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFTC 490 (768)
Q Consensus 425 ~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 490 (768)
.+++.|+|+|. +++++.||.+.++|+.+..+..++...+|.+.. -....|.+++...+..
T Consensus 1103 ~~~i~v~Dwd~----~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~--~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1103 VLTINVNDWDS----GEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT--FIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred eEEEEEeeccc----CCCccccccccccHhhcCcCCccceeeeccCcc--eEecccEeecceecch
Confidence 99999999998 569999999999999999998888888886543 1234467776666643
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-23 Score=219.41 Aligned_cols=251 Identities=18% Similarity=0.300 Sum_probs=199.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCCCCCce
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN-VVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEEC 279 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~-~~~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~~ 279 (768)
.|.|.|.+|+||+..+..|.+||||.|.+.+ ...||.++.+ ++.|.|+|.|.|.+...+ ..|.|.|||+| .++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~F-~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRTF-RYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcce-eeEEEEEeccc-cccccc
Confidence 4899999999999999999999999999965 5789999998 999999999999987644 36999999999 899999
Q ss_pred eEEEEEeccccccccCCCCCCceeEEcccCccCccccccccccceEEEEEecCCCcccccCcccccCccccccccCCCCe
Q 004208 280 LGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPV 359 (768)
Q Consensus 280 lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 359 (768)
||.+.|.=.+|... +..+.|+.|+.-..+ ....|+|++++.+.+... +
T Consensus 83 IGKvai~re~l~~~----~~~d~W~~L~~VD~d------sEVQG~v~l~l~~~e~~~---~------------------- 130 (800)
T KOG2059|consen 83 IGKVAIKREDLHMY----PGKDTWFSLQPVDPD------SEVQGKVHLELALTEAIQ---S------------------- 130 (800)
T ss_pred cceeeeeHHHHhhC----CCCccceeccccCCC------hhhceeEEEEEEeccccC---C-------------------
Confidence 99999988887743 368899999987543 357899999998744211 0
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCee----eeeccccCCCCCccccEEEEEEeCC-------------
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKW----VRTRTVVDSFDPKWNEQYTWEVYDP------------- 422 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~----~~T~~~~~t~nP~wne~~~~~v~~~------------- 422 (768)
..+..+++.++++.+ -.++.+||||++...+.+ .+|.+.++|.+|.|+|.|.|.+...
T Consensus 131 -~~~~c~~L~~r~~~P----~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~ 205 (800)
T KOG2059|consen 131 -SGLVCHVLKTRQGLP----IINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEE 205 (800)
T ss_pred -CcchhhhhhhcccCc----eeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCccc
Confidence 014445566666666 245569999999997655 4999999999999999999988633
Q ss_pred ---CcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCC----cccccEEEEEEEEEeccch
Q 004208 423 ---YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNG----VKKMGEVQLAVRFTCSSFV 494 (768)
Q Consensus 423 ---~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g----~~~~G~i~l~~~~~~~~~~ 494 (768)
...|.|.+||+.... .+++++|.+++++..+........||-|.....+. ..-.|.+++.+++..++++
T Consensus 206 e~~~l~irv~lW~~~~~~---~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~Vl 281 (800)
T KOG2059|consen 206 EDDMLEIRVDLWNDLNLV---INDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHVL 281 (800)
T ss_pred CCceeeEEEeeccchhhh---hhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeeceec
Confidence 237899999954432 26999999999999988766778999997653211 1235899999999877654
|
|
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=188.13 Aligned_cols=150 Identities=60% Similarity=0.965 Sum_probs=128.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCCCCCcee
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECL 280 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~~~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~~l 280 (768)
+|+|+|++|++|+..+.+|.+||||++.++++..+|+++.+++.||+|||.|.|.+.++..+.+.|+|+|++..+++++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 38999999999999999999999999999999999999876479999999999999877677899999999988889999
Q ss_pred EEEEEeccccccccCCCCCCceeEEcccCccCccccccccccceEEEEEecCCCcccccCcccccCcccc
Q 004208 281 GRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRS 350 (768)
Q Consensus 281 G~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~~~~~~~~~~~~~~~~~~~~ 350 (768)
|++.++|+++....+.+....+||+|.+..+..+..+..+..|+|++++++.+.+++++++.+|++|++|
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 9999999998754334566799999998743111223446789999999999999999999999998865
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.8e-23 Score=218.33 Aligned_cols=249 Identities=22% Similarity=0.274 Sum_probs=198.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCcee
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFI 117 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~l 117 (768)
..|.|+|.+|+||++.+..|++||||.|.++. ...||.++.+++.|-|.|+|+|.+... -..|.|-|||.|..+|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRDLKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEecccccccccc
Confidence 46999999999999999999999999999997 578999999999999999999998765 6789999999993399999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccCC-CCccceEEEEEEEEcccCCccccccccccccccccccccccccceeec
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD-GSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVYVS 196 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (768)
|++.|.=++|.... ....|+.|.... .+++.|+|++++.+.....+
T Consensus 84 GKvai~re~l~~~~-----~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~---------------------------- 130 (800)
T KOG2059|consen 84 GKVAIKREDLHMYP-----GKDTWFSLQPVDPDSEVQGKVHLELALTEAIQS---------------------------- 130 (800)
T ss_pred ceeeeeHHHHhhCC-----CCccceeccccCCChhhceeEEEEEEeccccCC----------------------------
Confidence 99999988886542 368999998775 34589999999877532210
Q ss_pred CCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe----EEeeecccCCCCCCcccceEEEEecCC-------------
Q 004208 197 PKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNV----VLKTTVSAKKTVNPTWNEDLMFVAAEP------------- 259 (768)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~----~~~T~~i~~~t~nP~wne~f~f~~~~~------------- 259 (768)
..+.+.+++++++.+.+. +.+|||+++...+. ..+|++.++ |.+|.|+|.|.|.+...
T Consensus 131 ---~~~~c~~L~~r~~~P~~~-~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~ 205 (800)
T KOG2059|consen 131 ---SGLVCHVLKTRQGLPIIN-GQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEE 205 (800)
T ss_pred ---CcchhhhhhhcccCceeC-CCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCccc
Confidence 125566677777776654 45999999999654 358999887 99999999999987654
Q ss_pred --CCCcEEEEEEe-ccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccCccCccccccccccceEEEEEec
Q 004208 260 --FDDPLILTVED-KLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSL 331 (768)
Q Consensus 260 --~~~~L~i~V~d-~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~ 331 (768)
..-.|++.+|+ ++....++|+|++.+++..+.. ......||.|++.. .|++..++.-.|.+++.+++
T Consensus 206 e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~----~s~p~~W~~Lqp~~-~g~~~~~~~~lGslrl~v~y 275 (800)
T KOG2059|consen 206 EDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQ----KSSPAAWYYLQPRP-NGEKSSDGGDLGSLRLNVTY 275 (800)
T ss_pred CCceeeEEEeeccchhhhhhhhhceeEEeehhhhhh----ccCccceEEEecCC-CcccCCCCCCccceeeeEEe
Confidence 22357788888 5666679999999999988762 23467899999873 34444455667888888875
|
|
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=176.55 Aligned_cols=119 Identities=67% Similarity=1.114 Sum_probs=106.3
Q ss_pred EEEEEEEecC---CCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCC--
Q 004208 363 LELGILSAKE---LLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLH-- 437 (768)
Q Consensus 363 l~v~v~~a~~---L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~-- 437 (768)
|+|+|++|+| |.. .|..|++||||++++|++++||++++++.||+|||+|.|.+.++...|.|+|||++.++
T Consensus 2 L~v~v~~A~~~~~l~~---~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 2 LEVGILGAQGLDVLRA---KDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWK 78 (126)
T ss_pred eEEEEEEeECCccccc---cccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccc
Confidence 8999999999 555 47889999999999999999999999999999999999999988889999999998741
Q ss_pred CCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEE
Q 004208 438 PGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQL 484 (768)
Q Consensus 438 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l 484 (768)
....+|++||++.++|+++..+..+..||||....+++.++.|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 00137999999999999999999899999999888778888899986
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=175.12 Aligned_cols=119 Identities=21% Similarity=0.368 Sum_probs=104.6
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccC-CCCCccccEEEEEEeCCCcEEEEEEEeCCCCCC
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVD-SFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHP 438 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~-t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~ 438 (768)
.|.|+|+|++|++++.. + .|++||||++.+|++++||+++.+ +.||.|||+|.|.+.+....|.|+|||++.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~---~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~- 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNY---G-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT- 75 (121)
T ss_pred CcEEEEEEEEccCCCcC---C-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc-
Confidence 37899999999998763 3 689999999999999999999976 79999999999999876678999999999976
Q ss_pred CCCCCCceEEEEEecc-ccccCceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 439 GGAKDSRIGKVRIRLS-TLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 439 ~~~~d~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
+|++||.+.|+|. .+..++....||+|.... +..+.|+|+|.++|
T Consensus 76 ---~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~--~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ---MDERIAWTHITIPESVFNGETLDDWYSLSGKQ--GEDKEGMINLVFSY 121 (121)
T ss_pred ---CCceEEEEEEECchhccCCCCccccEeCcCcc--CCCCceEEEEEEeC
Confidence 8999999999996 688888889999997643 44567999999985
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-21 Score=171.26 Aligned_cols=117 Identities=20% Similarity=0.298 Sum_probs=102.0
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecC-CCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCce
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEK-KLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDF 116 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~ 116 (768)
|.|.|+|++|++|+..+ .|++||||++.+++++.+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.+ +|++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMDER 79 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCCce
Confidence 78999999999988766 789999999999999999999865 79999999999998764 46799999999998 8999
Q ss_pred eEEEEEcCC-CCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEE
Q 004208 117 IGKIKIDMP-DIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWF 162 (768)
Q Consensus 117 lG~~~i~l~-~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~ 162 (768)
||++.+++. .+..+. ....|++|.+..+....|+|+++++|
T Consensus 80 iG~~~i~l~~~~~~g~-----~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNGE-----TLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCCC-----CccccEeCcCccCCCCceEEEEEEeC
Confidence 999999996 455442 25899999987766678999999875
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.3e-21 Score=173.12 Aligned_cols=121 Identities=59% Similarity=1.063 Sum_probs=108.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCceeEE
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGK 119 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~lG~ 119 (768)
+|.|+|++|+||+.. .+||||++.+++++.+|++++++.||+|||+|.|.+..+....|.|+|||++..++++||+
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~ 76 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGG 76 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeee
Confidence 489999999999876 7899999999999999999999999999999999988776889999999999878999999
Q ss_pred EEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcc
Q 004208 120 IKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGT 164 (768)
Q Consensus 120 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~ 164 (768)
+.+++.++......+.....+||+|.+..+.+..|+|.+++||++
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~~ 121 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFGT 121 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEecC
Confidence 999999997665444555689999998877668899999999973
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-20 Score=176.67 Aligned_cols=137 Identities=23% Similarity=0.383 Sum_probs=117.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccC-CCCCccccEEEEEEeCCC-cEEEEEEEeCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVD-SFDPKWNEQYTWEVYDPY-TVITLVVFDNCHLHPGG 440 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~-t~nP~wne~~~~~v~~~~-~~l~v~v~d~~~~~~~~ 440 (768)
|+|+|++|+||+++ +..|.+||||++++|++..+|+++.+ +.||.|||.|.|.+.++. +.+.|+|+|++.++
T Consensus 2 L~V~Vi~A~~L~~~---d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~--- 75 (150)
T cd04019 2 LRVTVIEAQDLVPS---DKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPN--- 75 (150)
T ss_pred EEEEEEEeECCCCC---CCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCC---
Confidence 89999999999985 67789999999999999999999976 699999999999998764 58999999998754
Q ss_pred CCCCceEEEEEeccccccC----ceeeeeEeeeecCC-----CCcccccEEEEEEEEEec-cchhhhhhhcCCCCC
Q 004208 441 AKDSRIGKVRIRLSTLETD----RIYTHSYPLVALLP-----NGVKKMGEVQLAVRFTCS-SFVNLLQTYSQPLLP 506 (768)
Q Consensus 441 ~~d~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~-----~g~~~~G~i~l~~~~~~~-~~~~~~~~~~~~~~p 506 (768)
+|++||++.|+|+++..+ .....||+|..... +..+..|+|+|+++|.+. ++.....+|.++++|
T Consensus 76 -~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 76 -KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred -CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 789999999999998753 45689999986532 234567999999999977 677888888887765
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-20 Score=169.25 Aligned_cols=117 Identities=25% Similarity=0.390 Sum_probs=101.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeC------CCcEEEEEEEeCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYD------PYTVITLVVFDNCHL 436 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~------~~~~l~v~v~d~~~~ 436 (768)
++|+|++|+||+.+ +..|.+||||+++++++.+||++++++.||.|||.|.|.+.+ ....|.+.|||++.+
T Consensus 1 ~~V~V~~A~~L~~~---d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCK---GKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCC---CCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999985 677899999999999999999999999999999999999987 356899999999986
Q ss_pred CCCCCCCCceEEEEEeccccc--cCceeeeeEeeeecCCCCcccccEEEEEE
Q 004208 437 HPGGAKDSRIGKVRIRLSTLE--TDRIYTHSYPLVALLPNGVKKMGEVQLAV 486 (768)
Q Consensus 437 ~~~~~~d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 486 (768)
+ +|++||++.|+|+++. .+.....||+|........+..|+|++++
T Consensus 78 ~----~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 78 G----LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred C----CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 5 7999999999999988 56667899999865443445679999887
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-20 Score=169.72 Aligned_cols=118 Identities=31% Similarity=0.525 Sum_probs=100.0
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCC
Q 004208 359 VIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHP 438 (768)
Q Consensus 359 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~ 438 (768)
..|.|+|.|.+|.||.. +|..+++||||++++|+++.||+++++++||+|||.|+|.+.|++..|+++|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~---rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs- 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAI---RDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS- 79 (168)
T ss_pred cceEEEEEEEeecCeee---eccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC-
Confidence 57899999999999988 47779999999999999999999999999999999999999999999999999999977
Q ss_pred CCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEE
Q 004208 439 GGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVR 487 (768)
Q Consensus 439 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 487 (768)
.||++|.+.|+|..+..... .+| |....+.|... |++.++..
T Consensus 80 ---~dD~mG~A~I~l~p~~~~~~--~~~-l~~~~~~gt~~-~~v~~s~d 121 (168)
T KOG1030|consen 80 ---SDDFMGEATIPLKPLLEAQK--MDY-LKLELLTGTAI-GKVLLSRD 121 (168)
T ss_pred ---cccccceeeeccHHHHHHhh--hhc-cccccCCCcEe-eEEEeccc
Confidence 99999999999999988763 344 44333333333 55554443
|
|
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-20 Score=167.10 Aligned_cols=117 Identities=27% Similarity=0.484 Sum_probs=101.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEecc-----CCCceEEEEEEEcCCC-CC
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKER-----LQAISVELLVKDKMIV-NG 114 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~-----~~~~~L~i~V~d~~~~-~d 114 (768)
++|+|++|+||+..+..|.+||||+|++++++.+|+++++++||+|||+|.|.+.. .....|.|+|||++.+ +|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 57999999999999989999999999999999999999999999999999999866 3567899999999988 89
Q ss_pred ceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCC--ccceEEEEEE
Q 004208 115 DFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS--RARGELMFAI 160 (768)
Q Consensus 115 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~G~i~l~i 160 (768)
++||++.|+|.++.... .....+|++|.+..+. +..|+|++++
T Consensus 81 ~~iG~~~i~l~~l~~~~---~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 81 KFLGQVSIPLNDLDEDK---GRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred ceeEEEEEEHHHhhccC---CCcccEEEECcCCCCCCccccceEEEEe
Confidence 99999999999986321 1235799999865542 3679999876
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-20 Score=166.71 Aligned_cols=94 Identities=32% Similarity=0.545 Sum_probs=89.6
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CC
Q 004208 36 EQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NG 114 (768)
Q Consensus 36 ~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d 114 (768)
...|.|+|+|++|.||..+|..++|||||++++|+++.+|+++++++||+|||+|.|.+.+. ...|.++|||+|.+ +|
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSSD 81 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCcc
Confidence 45789999999999999999889999999999999999999999999999999999999998 78999999999999 99
Q ss_pred ceeEEEEEcCCCCCCC
Q 004208 115 DFIGKIKIDMPDIPKR 130 (768)
Q Consensus 115 ~~lG~~~i~l~~l~~~ 130 (768)
|+||.|+|++..+...
T Consensus 82 D~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEA 97 (168)
T ss_pred cccceeeeccHHHHHH
Confidence 9999999999998765
|
|
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-19 Score=162.09 Aligned_cols=118 Identities=24% Similarity=0.375 Sum_probs=105.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCcee
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFI 117 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~l 117 (768)
+|+|+|++|++|+..|..|.+||||++++++ ...+|+++.++.||+|||+|.|.+.+. ...|.|+|||++.. +|++|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcce
Confidence 4899999999999999899999999999998 678999999999999999999998776 57899999999998 99999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEc
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFG 163 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~ 163 (768)
|++.+++.++..+.. ...|++|.+..+.+..|+|.+.+.+.
T Consensus 80 G~~~~~l~~l~~~~~-----~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 80 GSAFVDLSTLELNKP-----TEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred EEEEEEHHHcCCCCC-----eEEEEECCCCCCccCceEEEEEEEEC
Confidence 999999999986632 46899998876655789999998875
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-19 Score=161.99 Aligned_cols=118 Identities=25% Similarity=0.406 Sum_probs=105.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-eeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-KWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGA 441 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~~ 441 (768)
|+|+|++|+||+.. +..|.+||||++++++ ..++|+++.++.||.|||.|.|.+.++.+.|.|+|||++.++
T Consensus 2 L~v~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~---- 74 (121)
T cd04042 2 LDIHLKEGRNLAAR---DRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL---- 74 (121)
T ss_pred eEEEEEEeeCCCCc---CCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC----
Confidence 88999999999985 6678999999999987 679999999999999999999999887889999999999865
Q ss_pred CCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 442 KDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 442 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
+|++||++.++++++..+.....|++|.+.+ +.+..|+|++.++++
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~ 120 (121)
T cd04042 75 TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLT 120 (121)
T ss_pred CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEEC
Confidence 8999999999999999888888999997543 345689999999984
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-19 Score=161.48 Aligned_cols=112 Identities=23% Similarity=0.297 Sum_probs=97.9
Q ss_pred EEEEEEEeec---CCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-----
Q 004208 41 LYVRIVRARD---LQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV----- 112 (768)
Q Consensus 41 L~V~i~~a~~---L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~----- 112 (768)
|.|+|++|+| |..+|..|++||||++++++++.+|+++++++||+|||+|.|.+.+. ...|.|+|||++..
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCcccccc
Confidence 8999999999 88889999999999999999999999999999999999999999775 46899999999885
Q ss_pred --CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC--CccceEEEE
Q 004208 113 --NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG--SRARGELMF 158 (768)
Q Consensus 113 --~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l 158 (768)
+|++||++.++|..+..+. ....||+|....+ .+..|+|.+
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDR-----VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCCCceEEEEEEEHHHccCCC-----EEeeEEEeEeCCCCCccCCcEEEe
Confidence 8999999999999997653 2578999996642 235677754
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-19 Score=163.27 Aligned_cols=111 Identities=23% Similarity=0.399 Sum_probs=97.9
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEe---c
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTK---E 95 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~---~ 95 (768)
|...+++.|+ .+.|.|+|++|+||+..+ .+.+||||++++.+ .+++|++++++.||+|||+|.|.+ .
T Consensus 2 G~l~~~l~y~----~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~ 76 (122)
T cd08381 2 GQVKLSISYK----NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVE 76 (122)
T ss_pred CeEEEEEEEe----CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChH
Confidence 4568899999 478999999999999999 89999999999973 468999999999999999999986 3
Q ss_pred cCCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEc
Q 004208 96 RLQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRL 144 (768)
Q Consensus 96 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 144 (768)
++....|.|+|||++.. ++++||++.|+|.++.... ....||+|
T Consensus 77 ~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L 121 (122)
T cd08381 77 DLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQ-----ETEKWYPL 121 (122)
T ss_pred HhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCC-----CccceEEC
Confidence 55678999999999998 8999999999999998653 25789987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-19 Score=162.22 Aligned_cols=120 Identities=26% Similarity=0.395 Sum_probs=103.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccC---CCceEEEEEEEcCCC--CC
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERL---QAISVELLVKDKMIV--NG 114 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~---~~~~L~i~V~d~~~~--~d 114 (768)
.|+|+|++|++|+..|..|.+||||++++++++.+|++++++.||+|||+|.|.+.+. ....|.|+|||++.. ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 3899999999999999889999999999999999999999999999999999998643 246899999999876 79
Q ss_pred ceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC-CCccceEEEEEEEEc
Q 004208 115 DFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD-GSRARGELMFAIWFG 163 (768)
Q Consensus 115 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~i~~~ 163 (768)
++||++.+++.++.... ....+||+|+.+. .++.+|+|.+++++.
T Consensus 81 ~~lG~v~i~l~~l~~~~----~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVPPS----EAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCCCC----CccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 99999999999987321 3368999999754 234789999999874
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.4e-19 Score=162.61 Aligned_cols=123 Identities=28% Similarity=0.421 Sum_probs=104.4
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CC
Q 004208 36 EQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NG 114 (768)
Q Consensus 36 ~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d 114 (768)
.++|.|+|+|++|++|+..|..|.+||||++.+++++.+|++++++.||.|||+|.|.+.+.....|.|+|||++.. +|
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d 91 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPD 91 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCC
Confidence 35789999999999999999899999999999999999999999999999999999999877678999999999988 89
Q ss_pred ceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEE
Q 004208 115 DFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWF 162 (768)
Q Consensus 115 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~ 162 (768)
++||++.+++.++............+|..+.. ..+|+|.+++.+
T Consensus 92 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~----~~~g~i~l~~~~ 135 (136)
T cd08375 92 DFLGRTEIRVADILKETKESKGPITKRLLLHE----VPTGEVVVKLDL 135 (136)
T ss_pred CeeEEEEEEHHHhccccccCCCcEEEEecccc----ccceeEEEEEEe
Confidence 99999999999987633222222345666642 256999998875
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.9e-19 Score=157.74 Aligned_cols=119 Identities=28% Similarity=0.448 Sum_probs=102.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGA 441 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~~ 441 (768)
|.|.|++|+||++++ +..|.+||||++.++++ .++|+++++|+||.|||+|.|.+.+....|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~--~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~---- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRS--GPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR---- 75 (121)
T ss_pred eEEEEEEccCCCCCC--CCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC----
Confidence 789999999999863 23578999999999875 58999999999999999999999876679999999999865
Q ss_pred CCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 442 KDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 442 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
+|++||.+.++++++..+.....||+|......+ +..|+|+|+++|
T Consensus 76 ~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~ 121 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADS-EVQGKVHLELRL 121 (121)
T ss_pred CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCC-cccEEEEEEEEC
Confidence 8999999999999999887788999997654323 347999999875
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=164.89 Aligned_cols=124 Identities=23% Similarity=0.315 Sum_probs=107.8
Q ss_pred eeEEEEEEEEecCCCCCCCC---------------------------CCCCCcCcEEEEEecCee-eeeccccCCCCCcc
Q 004208 360 IGVLELGILSAKELLPMKSR---------------------------DGRGTTDAYCVAKYANKW-VRTRTVVDSFDPKW 411 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~---------------------------~~~g~~dpyv~v~~g~~~-~~T~~~~~t~nP~w 411 (768)
-|.|+|+|++|++|+++|.. ...|.+||||++.+++.. .||++++++.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 47899999999999998620 246789999999998755 69999999999999
Q ss_pred ccEEEEEEeCCCcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 412 NEQYTWEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 412 ne~~~~~v~~~~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
||.|.|.+.++.+.|.|.|+|++.++ +++||++.|+++++..+.....||+|.....++.+..|+|+++++|
T Consensus 86 nE~F~~~~~~~~~~l~~~V~d~d~~~-----~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHYASHVEFTVKDNDVVG-----AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCCCCEEEEEEEeCCCcC-----CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999999888889999999998753 6799999999999999888899999987655555667899999988
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-19 Score=200.27 Aligned_cols=400 Identities=17% Similarity=0.176 Sum_probs=255.7
Q ss_pred cccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccC---------
Q 004208 27 RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERL--------- 97 (768)
Q Consensus 27 ~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~--------- 97 (768)
.++-.|+-+ ..+.++++|.+|++|.+.|..+.||||+.+.+-++.+.|.++.+|+||.||++..|.-.++
T Consensus 195 ~~Sc~~~e~-~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~ 273 (1105)
T KOG1326|consen 195 EFSCYLSEV-IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLK 273 (1105)
T ss_pred ceEEecchh-hhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhc
Confidence 445555544 4677999999999999999999999999999999999999999999999999999973211
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcccCCccccccccc
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQADEAFSSAWHS 176 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~~~d~~~~~~~~~ 176 (768)
+-..+.|+|||.++. .++|+|+......-... +....|+++... ....|+++++......... -.|..
T Consensus 274 ~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~------~p~lkw~p~~rg--~~l~gd~l~a~eliq~~~~---i~~p~ 342 (1105)
T KOG1326|consen 274 NPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ------CPALKWVPTMRG--AFLDGDVLIAAELIQIGKP---IPQPP 342 (1105)
T ss_pred CCCeEEEEeehhhhhchHHhhcccccceEEEec------CCccceEEeecc--cccccchhHHHHHHhhcCC---CCCCC
Confidence 236788999999998 99999998776443332 125789998754 3356777765433222210 11111
Q ss_pred cccccccccccccccceeecC-------CeeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEeeecccCCCCCCccc
Q 004208 177 DTAVVSGENIMNCRSKVYVSP-------KLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWN 249 (768)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p-------~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~~~~T~~i~~~t~nP~wn 249 (768)
+. .+...+..| +.+.+.|-...-+++..........|-+.+.+|++..++..+.+...||.+.
T Consensus 343 ~~----------~~~~~~~vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf~ 412 (1105)
T KOG1326|consen 343 PQ----------REIIFSLVPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNFP 412 (1105)
T ss_pred cc----------cccceeccccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCCCc
Confidence 10 001111112 2223333333445555444455678889999999999999988778899999
Q ss_pred ceEEEEe-cCC----CCCcEEEEEEeccCCCCCceeEEEEEeccc-ccc----------cc--CC------------CCC
Q 004208 250 EDLMFVA-AEP----FDDPLILTVEDKLGDNKEECLGRLVLPLSK-AGK----------RF--LP------------LPA 299 (768)
Q Consensus 250 e~f~f~~-~~~----~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~-l~~----------~~--~~------------~~~ 299 (768)
..|.+-. .-+ ....+.++|.|.+.+++-..+|+|.+.-.. ..- +. ++ ...
T Consensus 413 s~~~~~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~ 492 (1105)
T KOG1326|consen 413 SRVLGRLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHC 492 (1105)
T ss_pred eeEEEEEEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhc
Confidence 7765543 222 345799999999999999999998876311 100 00 00 000
Q ss_pred CceeEEcccCccCcc---------------ccccccccce--EEEEEecC----------------------CCcc--cc
Q 004208 300 AAIWYNLERNIANGE---------------EKKDVRFASR--ICLRFSLD----------------------GGYH--VF 338 (768)
Q Consensus 300 ~~~w~~L~~~~~~g~---------------~~~~~~~~g~--i~l~v~~~----------------------~~~~--~~ 338 (768)
...|++..+...+++ ......+.-+ ..+.++-. |... ..
T Consensus 493 ~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~rG~~~~e~~ 572 (1105)
T KOG1326|consen 493 NSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLYRGKEGLECL 572 (1105)
T ss_pred cccCCCCCccccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEeeeccccCCCc
Confidence 011111111100000 0000011111 23333310 0000 00
Q ss_pred cCccc---------c------cCccccc-cccCC--CCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCee--e
Q 004208 339 DEATN---------Y------SSDLRST-MKQLW--PPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKW--V 398 (768)
Q Consensus 339 ~~~~~---------~------~~~~~~~-~~~l~--~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~--~ 398 (768)
++... + +++..+. ...+. .+..-.++|.|.+|.+|.+. |++|.+|||+++.+|++. -
T Consensus 573 e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~---D~ng~adpYv~l~lGk~~~~d 649 (1105)
T KOG1326|consen 573 EQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPS---DGNGDADPYVKLLLGKKRTLD 649 (1105)
T ss_pred ccchhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeecccc---CCCCCcCceeeeeeccchhhh
Confidence 00000 0 0000000 00010 24556789999999999994 899999999999999988 5
Q ss_pred eeccccCCCCCccccEEEEEEeCCCc-EEEEEEEeCCCCCCCCCCCCceEEEEEeccc
Q 004208 399 RTRTVVDSFDPKWNEQYTWEVYDPYT-VITLVVFDNCHLHPGGAKDSRIGKVRIRLST 455 (768)
Q Consensus 399 ~T~~~~~t~nP~wne~~~~~v~~~~~-~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~ 455 (768)
++..+.+|+||+|++.|++....|.+ .++|+|||+|.++ +|+.||...|+|.+
T Consensus 650 ~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~----~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 650 RAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA----QDEKIGETTIDLEN 703 (1105)
T ss_pred hhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc----ccchhhceehhhhh
Confidence 66678899999999999999988765 8999999999966 89999999999985
|
|
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.5e-19 Score=155.09 Aligned_cols=102 Identities=25% Similarity=0.427 Sum_probs=89.5
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCcee
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFI 117 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~l 117 (768)
|+.|.|+|++|++|...+ ..||||++++++++.+|++.++ .||+|||+|.|.+.+.. ..|.|+|||+|.+.|++|
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~~DD~l 75 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLIWDTLV 75 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCcCCCce
Confidence 578999999999996543 5699999999999999999987 59999999999998764 449999999997799999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccC
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAK 147 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 147 (768)
|++.|+|.++..+. .++.++||+|++.
T Consensus 76 G~v~i~L~~v~~~~---~~~~~~Wy~L~~~ 102 (127)
T cd08394 76 GTVWIPLSTIRQSN---EEGPGEWLTLDSE 102 (127)
T ss_pred EEEEEEhHHcccCC---CCCCCccEecChH
Confidence 99999999998763 3667999999854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.6e-19 Score=158.65 Aligned_cols=117 Identities=25% Similarity=0.369 Sum_probs=101.8
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeec-CCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCcee
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFE-KKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFI 117 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~l 117 (768)
|.|+|+|++|++|+..+..+.+||||++.+++++.+|+++. ++.||+|||+|.|.+.......|.|+|||++..+|++|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~i 80 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLI 80 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcce
Confidence 57999999999999999899999999999999989999875 57999999999999977556889999999987779999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEE
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWF 162 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~ 162 (768)
|++.+++.++..+. ...+|++|.... +..|+|.+++.|
T Consensus 81 G~~~~~l~~~~~~~-----~~~~w~~L~~~~--~~~G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKEG-----EFDDWYELTLKG--RYAGEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhcC-----CCCCcEEeccCC--cEeeEEEEEEEC
Confidence 99999999986542 247999998643 367999998864
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.1e-19 Score=154.62 Aligned_cols=100 Identities=15% Similarity=0.246 Sum_probs=87.9
Q ss_pred CcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeEeeeecCCCCCeeeeEEEEEec--cCCC
Q 004208 26 ERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN----YKGTTIPFEKKLNPEWNQVFAFTKE--RLQA 99 (768)
Q Consensus 26 ~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~----~~~~T~~~~~t~nP~Wne~f~f~~~--~~~~ 99 (768)
..+++.|+.. .+.|.|+|++|++|+ . .|.+||||++.+.. .+.+|+++++|+||+|||+|.|.+. ++..
T Consensus 3 l~fsL~Y~~~--~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~ 77 (118)
T cd08677 3 LHYSLSYDKQ--KAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLD 77 (118)
T ss_pred EEEEEEEcCc--CCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCC
Confidence 4678889964 689999999999998 3 46699999999974 4779999999999999999999974 5677
Q ss_pred ceEEEEEEEcCCC-CCceeEEEEEcCCCCCCC
Q 004208 100 ISVELLVKDKMIV-NGDFIGKIKIDMPDIPKR 130 (768)
Q Consensus 100 ~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~ 130 (768)
..|.|.|||+|++ ++++||++.+++.++...
T Consensus 78 ~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~ 109 (118)
T cd08677 78 GTLTLTLRCCDRFSRHSTLGELRLKLADVSMM 109 (118)
T ss_pred cEEEEEEEeCCCCCCCceEEEEEEccccccCC
Confidence 8999999999999 999999999999987544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-18 Score=157.80 Aligned_cols=119 Identities=27% Similarity=0.467 Sum_probs=102.1
Q ss_pred CCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCC-cEEEEEEEeCCC
Q 004208 357 PPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPY-TVITLVVFDNCH 435 (768)
Q Consensus 357 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~-~~l~v~v~d~~~ 435 (768)
...+|.|+|+|++|+||++. +..|.+||||++.++++.+||++++++.||.|||.|.|.+.++. +.|.|+|||++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~---d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~ 87 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPC---NSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF 87 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence 46789999999999999985 67789999999999999999999999999999999999998754 589999999998
Q ss_pred CCCCCCCCCceEEEEEecccccc-----CceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 436 LHPGGAKDSRIGKVRIRLSTLET-----DRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 436 ~~~~~~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
++ +|++||++.++|+++.. ......|.++. .+..|+|+|++.|
T Consensus 88 ~~----~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~------~~~~g~i~l~~~~ 135 (136)
T cd08375 88 FS----PDDFLGRTEIRVADILKETKESKGPITKRLLLH------EVPTGEVVVKLDL 135 (136)
T ss_pred CC----CCCeeEEEEEEHHHhccccccCCCcEEEEeccc------cccceeEEEEEEe
Confidence 65 89999999999999986 22344555552 3345999999987
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.3e-18 Score=154.00 Aligned_cols=113 Identities=25% Similarity=0.465 Sum_probs=101.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCC-CcEEEEEEEeCCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDP-YTVITLVVFDNCHLHPGGA 441 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~-~~~l~v~v~d~~~~~~~~~ 441 (768)
++|.|++|+||+.. +..|.+||||+++++++.++|++++++.||.|||.|.|.+.++ ...|.|+|||++.++
T Consensus 2 ~~V~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~---- 74 (116)
T cd08376 2 VTIVLVEGKNLPPM---DDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK---- 74 (116)
T ss_pred EEEEEEEEECCCCC---CCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC----
Confidence 78999999999985 5678999999999999999999999999999999999999876 679999999999865
Q ss_pred CCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 442 KDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 442 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
+|++||++.++|+++..+.....||+|... .|+|++++.++
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-------~G~~~~~~~~~ 115 (116)
T cd08376 75 KDEFIGRCEIDLSALPREQTHSLELELEDG-------EGSLLLLLTLT 115 (116)
T ss_pred CCCeEEEEEEeHHHCCCCCceEEEEEccCC-------CcEEEEEEEec
Confidence 899999999999999998888999999532 39999998874
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-18 Score=154.96 Aligned_cols=118 Identities=25% Similarity=0.452 Sum_probs=100.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCCC-cEEEEEEEeCCCCCC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDPY-TVITLVVFDNCHLHP 438 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~~-~~l~v~v~d~~~~~~ 438 (768)
..|+|+|++|+||++. +.+||||++.+++. ..||++ +++.||.|||.|.|.+..+. ..++|.|||++.++
T Consensus 4 ~~L~V~Vi~A~~L~~~------~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~- 75 (126)
T cd08400 4 RSLQLNVLEAHKLPVK------HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRS- 75 (126)
T ss_pred eEEEEEEEEeeCCCCC------CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCC-
Confidence 4699999999999762 46899999999874 478987 46899999999999976554 58999999999865
Q ss_pred CCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 439 GGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 439 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
+|++||++.|+|+++..+.....||+|......+.+..|+|+|+++|.
T Consensus 76 ---~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 76 ---KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred ---CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 899999999999999998888999999876544556679999999995
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-18 Score=153.75 Aligned_cols=113 Identities=27% Similarity=0.434 Sum_probs=101.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCceeE
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFIG 118 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~lG 118 (768)
.|+|+|++|++|+..+..+.+||||++++++++.+|+++++|.||.|||+|.|.+.+.....|.|+|||++.. +|++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 3789999999999999889999999999999999999999999999999999998776678999999999998 999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEE
Q 004208 119 KIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWF 162 (768)
Q Consensus 119 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~ 162 (768)
++.+++.++..+. ....|++|++. .|+|.+.+.+
T Consensus 81 ~~~~~l~~l~~~~-----~~~~w~~L~~~-----~G~~~~~~~~ 114 (116)
T cd08376 81 RCEIDLSALPREQ-----THSLELELEDG-----EGSLLLLLTL 114 (116)
T ss_pred EEEEeHHHCCCCC-----ceEEEEEccCC-----CcEEEEEEEe
Confidence 9999999987653 35799999864 3889887765
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=155.58 Aligned_cols=116 Identities=27% Similarity=0.464 Sum_probs=100.6
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccC-CCCCccccEEEEEEeCC-CcEEEEEEEeCCCCCC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVD-SFDPKWNEQYTWEVYDP-YTVITLVVFDNCHLHP 438 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~-t~nP~wne~~~~~v~~~-~~~l~v~v~d~~~~~~ 438 (768)
|.|+|+|++|+||+.. +..+.+||||+++++++..+|+++.+ +.||.|||.|.|.+..+ .+.|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNK---RKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCC---CcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC--
Confidence 6799999999999985 67789999999999999999999865 78999999999999874 56899999999863
Q ss_pred CCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 439 GGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 439 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
.|++||++.++++++..+.....||+|... + +..|+|+|+++|
T Consensus 76 ---~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~---~-~~~G~i~l~l~f 118 (118)
T cd08681 76 ---KPDLIGDTEVDLSPALKEGEFDDWYELTLK---G-RYAGEVYLELTF 118 (118)
T ss_pred ---CCcceEEEEEecHHHhhcCCCCCcEEeccC---C-cEeeEEEEEEEC
Confidence 388999999999998877667899999642 2 466999999875
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-18 Score=158.90 Aligned_cols=114 Identities=24% Similarity=0.252 Sum_probs=98.0
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccCC
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQ-VTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERLQ 98 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~ 98 (768)
...+++.|+ .+.|.|+|++|+||+..+ ..|.+||||++++.+ .+.||+++++|+||+|||+|.|.+. +.
T Consensus 19 ~l~lsl~y~----~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~ 93 (146)
T cd04028 19 DIQLGLYDK----KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PT 93 (146)
T ss_pred eEEEEEEeC----CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CC
Confidence 567888884 478999999999998864 578899999999964 3679999999999999999999998 66
Q ss_pred CceEEEEEE-EcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC
Q 004208 99 AISVELLVK-DKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148 (768)
Q Consensus 99 ~~~L~i~V~-d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 148 (768)
...|.|+|| |++.+ ++++||++.|+|.++..+. ....||+|.+..
T Consensus 94 ~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~-----~~~~Wy~L~~~~ 140 (146)
T cd04028 94 GKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSN-----LVIGWYKLFPTS 140 (146)
T ss_pred CCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCC-----CceeEEecCCcc
Confidence 889999999 57777 8999999999999986553 247899998764
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-18 Score=156.59 Aligned_cols=121 Identities=25% Similarity=0.414 Sum_probs=104.9
Q ss_pred cEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCc
Q 004208 39 EFLYVRIVRARDLQVNQV--TGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGD 115 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~--~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~ 115 (768)
|.|+|+|++|++|+..+. .+.+||||++++++++.+|++++++.||+|||+|.|.+.+.....|.|+|||++.. +++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 579999999999999887 88999999999999999999999999999999999999876678999999999988 899
Q ss_pred eeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC---CccceEEEEEEE
Q 004208 116 FIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG---SRARGELMFAIW 161 (768)
Q Consensus 116 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~---~~~~G~i~l~i~ 161 (768)
+||++.+++.++..... .....+|++|.+... ....|+|.+.+.
T Consensus 81 ~lG~~~i~l~~~~~~~~--~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 81 YLGEFDIALEEVFADGK--TGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred cceEEEEEHHHhhcccc--cCccceeEEccCcccCccccccceEEEEEE
Confidence 99999999999874211 123579999987742 236899999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-18 Score=157.44 Aligned_cols=115 Identities=23% Similarity=0.397 Sum_probs=98.8
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec--
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVT-GTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE-- 95 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~-g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~-- 95 (768)
|..++++.|+.. .+.|.|+|++|+||++.|.. |.+||||++++.+ .+.+|++++++.||+|||+|.|.+.
T Consensus 2 G~i~~sl~y~~~--~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~ 79 (125)
T cd08393 2 GSVQFALDYDPK--LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVERE 79 (125)
T ss_pred cEEEEEEEEECC--CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHH
Confidence 356889999864 57899999999999999875 8999999999963 3579999999999999999999975
Q ss_pred cCCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 96 RLQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 96 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
++....|.|+|||++.. ++++||++.++|.++.... ....||+|.
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~-----~~~~W~~L~ 125 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSN-----TQPTWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCC-----CCcceEECc
Confidence 45567999999999988 8999999999999996652 257899874
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-18 Score=156.16 Aligned_cols=118 Identities=20% Similarity=0.318 Sum_probs=100.3
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec--
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVT-GTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE-- 95 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~-g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~-- 95 (768)
|..++++.|+.. .+.|.|+|++|+||+.+|.. |.+||||++++.+ .+.||++++++.||+|||+|.|.+.
T Consensus 2 G~i~~sl~Y~~~--~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~ 79 (128)
T cd08392 2 GEIEFALHYNFR--TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEAD 79 (128)
T ss_pred cEEEEEEEEeCC--CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHH
Confidence 467899999975 47999999999999998875 9999999999964 3679999999999999999999974
Q ss_pred cCCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 96 RLQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 96 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
++....|.|.|||.+.+ ++++||++.|+|.++..... .+....||+|.
T Consensus 80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~--~~~~~~W~~l~ 128 (128)
T cd08392 80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDT--DSQRFLWYPLN 128 (128)
T ss_pred HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCC--CccccceEECc
Confidence 34467999999999988 99999999999999966532 13468999973
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.8e-18 Score=152.02 Aligned_cols=116 Identities=29% Similarity=0.544 Sum_probs=103.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCcee
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFI 117 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~l 117 (768)
|.|.|+|++|++|+..+..+.+||||++++++...+|++++++.||.|||+|.|.+.+. ...|.|+|||++.. ++++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCcee
Confidence 57999999999999999889999999999999889999999999999999999998765 57899999999987 99999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC-CccceEEEEEEEE
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG-SRARGELMFAIWF 162 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~i~~ 162 (768)
|++.+++.++..+ ...|++|.++.. .+..|+|.+++.+
T Consensus 80 G~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 80 GKVAIPLLSIKNG-------ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eEEEEEHHHCCCC-------CceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999998654 368999987653 3478999998765
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.1e-18 Score=152.26 Aligned_cols=118 Identities=25% Similarity=0.477 Sum_probs=103.2
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGG 440 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~ 440 (768)
|.|+|+|++|+||+.+ +..+.+||||++++++..++|++++++.||.|||+|.|.+.+....+.|+|||++.++
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~--- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAA---DIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK--- 74 (119)
T ss_pred CEEEEEEEeeeCCCCC---CCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC---
Confidence 6799999999999985 6677899999999999999999999999999999999999877789999999998754
Q ss_pred CCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 441 AKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 441 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
++++||++.+++.++..+. ..||+|..... ..+..|+|.+++.|
T Consensus 75 -~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~-~~~~~G~i~l~~~~ 118 (119)
T cd08377 75 -KPEFLGKVAIPLLSIKNGE--RKWYALKDKKL-RTRAKGSILLEMDV 118 (119)
T ss_pred -CCceeeEEEEEHHHCCCCC--ceEEECcccCC-CCceeeEEEEEEEe
Confidence 7899999999999998765 58999975533 23356999999887
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.7e-18 Score=155.97 Aligned_cols=122 Identities=25% Similarity=0.464 Sum_probs=104.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-------KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV 112 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~ 112 (768)
.|+|+|++|++|+..|..|.+||||++++++. +.+|+++++|.||+|||+|.|.+... ...|.|+|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 38999999999999998899999999999764 46899999999999999999998654 56899999999998
Q ss_pred -CCceeEEEEEcCCCCCCCCCCC-CCCCCeEEEcccCCC-CccceEEEEEEEE
Q 004208 113 -NGDFIGKIKIDMPDIPKRVPPD-SPLAPEWKRLEAKDG-SRARGELMFAIWF 162 (768)
Q Consensus 113 -~d~~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~~-~~~~G~i~l~i~~ 162 (768)
++++||++.+++.++....+.+ .....+||+|++..+ ++..|+|++++.|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 8999999999999998764432 234679999997643 3478999999876
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.8e-18 Score=154.34 Aligned_cols=120 Identities=29% Similarity=0.503 Sum_probs=101.9
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCC----cEEEEEEEeCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPY----TVITLVVFDNCHLHP 438 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~----~~l~v~v~d~~~~~~ 438 (768)
|+|+|++|+||.+. +..|.+||||+++++++.+||++++++.||.|||.|.|.+.++. ..|.|+|||++.++
T Consensus 2 L~V~vi~A~~L~~~---d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~- 77 (127)
T cd04022 2 LVVEVVDAQDLMPK---DGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG- 77 (127)
T ss_pred eEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc-
Confidence 89999999999985 66788999999999999999999999999999999999998643 47999999988742
Q ss_pred CCCCCCceEEEEEeccccc-cCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 439 GGAKDSRIGKVRIRLSTLE-TDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 439 ~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
++|++||++.++++++. .+.....||+|..... ..+..|+|+|++.++
T Consensus 78 --~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~~ 126 (127)
T cd04022 78 --RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGL-FSRVRGEIGLKVYIT 126 (127)
T ss_pred --CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCC-CCCccEEEEEEEEEc
Confidence 26889999999999998 4666689999975432 234579999999874
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.6e-18 Score=154.61 Aligned_cols=120 Identities=22% Similarity=0.439 Sum_probs=102.9
Q ss_pred eEEEEEEEEecCCCCCCCCCC--CCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeC-CCcEEEEEEEeCCCCC
Q 004208 361 GVLELGILSAKELLPMKSRDG--RGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYD-PYTVITLVVFDNCHLH 437 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~--~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~-~~~~l~v~v~d~~~~~ 437 (768)
|.|+|.|++|+||+.. +. .+.+||||++.++++.++|++++++.||.|||.|.|.+.+ ....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAK---DRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcc---cCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 6799999999999985 45 7899999999999999999999999999999999999997 4679999999999854
Q ss_pred CCCCCCCceEEEEEecccccc---CceeeeeEeeeecCC-CCcccccEEEEEEE
Q 004208 438 PGGAKDSRIGKVRIRLSTLET---DRIYTHSYPLVALLP-NGVKKMGEVQLAVR 487 (768)
Q Consensus 438 ~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~-~g~~~~G~i~l~~~ 487 (768)
+|++||++.++|.++.. ......||+|..... +.....|+|+|++.
T Consensus 78 ----~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 78 ----GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred ----CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence 78999999999999873 334579999986532 23446899999886
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=152.65 Aligned_cols=119 Identities=18% Similarity=0.333 Sum_probs=102.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC--eeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYAN--KWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGG 440 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~--~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~ 440 (768)
|.|+|++|+||+. ..|.+||||++++++ +.+||++++++.||.|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~--- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS--- 72 (126)
T ss_pred CEEEEEEecCCCC-----CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC---
Confidence 5789999999975 457899999999974 568999999999999999999999766678999999999854
Q ss_pred CCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEEe
Q 004208 441 AKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFTC 490 (768)
Q Consensus 441 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 490 (768)
+|++||++.++++++..+.....||+|......+.+..|+|++++.|..
T Consensus 73 -~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 73 -DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred -CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 7999999999999999877678899997553334556799999999954
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.9e-18 Score=150.89 Aligned_cols=102 Identities=25% Similarity=0.402 Sum_probs=87.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeEeeeecCCCCCeeeeEEEEEecc---CCCceEEEEEEEc
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-------YKGTTIPFEKKLNPEWNQVFAFTKER---LQAISVELLVKDK 109 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~~t~nP~Wne~f~f~~~~---~~~~~L~i~V~d~ 109 (768)
.|+|+|++|++|+..+ .|.+||||+|++-| ++++|+++.+|.||+|||+|.|.+.. +....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999887 59999999999832 35689999999999999999999863 4456799999999
Q ss_pred CCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccC
Q 004208 110 MIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAK 147 (768)
Q Consensus 110 ~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 147 (768)
+.. ++++||++.+++.++..+. ....|++|+..
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~-----~~~~w~~L~~~ 113 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAG-----SCACWLPLGRR 113 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCC-----cEEEEEECcCc
Confidence 977 7999999999999998663 25789999765
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.1e-18 Score=153.57 Aligned_cols=115 Identities=20% Similarity=0.282 Sum_probs=97.9
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEecc-
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQV-TGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKER- 96 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~-~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~- 96 (768)
|..++++.|+- ..+.|.|+|++|+||+..+. .|.+||||++++.+ .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~y~~--~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 79 (125)
T cd04029 2 GEILFSLSYDY--KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHS 79 (125)
T ss_pred cEEEEEEEEEC--CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHH
Confidence 45678888874 56899999999999998875 58899999999963 35789999999999999999999753
Q ss_pred -CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 97 -LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 97 -~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
+....|.|+|||++.. ++++||++.++|..+.... ....|++|.
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~-----~~~~w~~l~ 125 (125)
T cd04029 80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDS-----QHEECLPLH 125 (125)
T ss_pred HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccC-----CcccEEECc
Confidence 4567899999999988 9999999999999997663 257899984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=150.80 Aligned_cols=118 Identities=15% Similarity=0.235 Sum_probs=102.1
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCcee
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFI 117 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~l 117 (768)
-.+|+|+|++|++|...|..|.+||||++++++++.+|++++++.||+|||.|.|.+.+. ...|.|+|||++..+|++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCCce
Confidence 358999999999999999899999999999999999999999999999999999988765 6789999999988889999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccCC---CCccceEEEEEEEEc
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD---GSRARGELMFAIWFG 163 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~---~~~~~G~i~l~i~~~ 163 (768)
|++.+++..+... ..+|++|.... +.+..|+|.+++.+.
T Consensus 81 G~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 81 GQATLSADPNDSQ-------TLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred EEEEEecccCCCc-------CceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 9999999875422 46888986432 334789999998765
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=152.81 Aligned_cols=122 Identities=25% Similarity=0.356 Sum_probs=99.6
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccC---------CCceEEEEEEEc
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERL---------QAISVELLVKDK 109 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~---------~~~~L~i~V~d~ 109 (768)
++|+|+|++|++|+..|..|.+||||++.+++++.+|+++++|.||+|||+|.|.+..+ ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 47999999999999999999999999999999999999999999999999999985332 125799999999
Q ss_pred CCC-CCceeEEEEE-cCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcc
Q 004208 110 MIV-NGDFIGKIKI-DMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGT 164 (768)
Q Consensus 110 ~~~-~d~~lG~~~i-~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~ 164 (768)
+.. +|++||++.+ ++..+... .......+|++|.... ...|+|++++.+..
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~--~~~~~~~~W~~L~~~~--~~~Geil~~~~~~~ 133 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLE--EDFPPKLQWFPIYKGG--QSAGELLAAFELIE 133 (135)
T ss_pred cCCCCCccceEEEeeeeeecccC--CCCCCCceEEEeecCC--CchhheeEEeEEEE
Confidence 988 8999999997 34333321 1234568999997543 36899999987753
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=151.20 Aligned_cols=113 Identities=26% Similarity=0.365 Sum_probs=98.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCcee
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFI 117 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~l 117 (768)
|.|+|++|++|+..+..+.+||||++++++ ++.+|++++++.||+|||+|.|.+.......|.|+|||++..+|++|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i 81 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL 81 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence 789999999999988889999999999964 67899999999999999999999876556789999999998889999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEE
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWF 162 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~ 162 (768)
|++.+++.++..+. ....|++|.++ ..|+|.+.+.+
T Consensus 82 G~~~~~l~~l~~g~-----~~~~~~~L~~~----~~g~l~~~~~~ 117 (119)
T cd04036 82 GTVLFDVSKLKLGE-----KVRVTFSLNPQ----GKEELEVEFLL 117 (119)
T ss_pred EEEEEEHHHCCCCC-----cEEEEEECCCC----CCceEEEEEEe
Confidence 99999999987653 25789999875 24888887754
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-17 Score=149.88 Aligned_cols=118 Identities=17% Similarity=0.309 Sum_probs=98.2
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCc
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGD 115 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~ 115 (768)
...|.|+|++|+||+.. +.+||||+|.+++. ..+|++ +++.||.|||+|.|.+.......+.|.|||.+.. +|+
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 45799999999999864 47899999999984 468887 4689999999999986544346799999999988 999
Q ss_pred eeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC--CccceEEEEEEEEcc
Q 004208 116 FIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG--SRARGELMFAIWFGT 164 (768)
Q Consensus 116 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~i~~~~ 164 (768)
+||++.++|.++..+. ....|++|.+..+ .+..|+|+++++|..
T Consensus 79 ~iG~v~i~l~~l~~~~-----~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 79 EIAEVTVQLSKLQNGQ-----ETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred eEEEEEEEHhHccCCC-----cccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 9999999999987653 2578999987653 346799999999864
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=149.96 Aligned_cols=115 Identities=23% Similarity=0.335 Sum_probs=98.4
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCcee
Q 004208 41 LYVRIVRARDLQVNQ-VTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFI 117 (768)
Q Consensus 41 L~V~i~~a~~L~~~d-~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~l 117 (768)
|.|+|.+|+||+..+ ..|.+||||+++++++ ..+|+++++|.||+|||+|.|.+.+. ...|.|.|||++.. +|++|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCceE
Confidence 789999999999874 4678999999999875 68999999999999999999999764 47999999999998 99999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC-CccceEEEEEEE
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG-SRARGELMFAIW 161 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~i~ 161 (768)
|++.+++.++..+. ....|++|.+... .+..|+|++++.
T Consensus 81 G~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 81 GKVAIKKEDLHKYY-----GKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEEHHHccCCC-----CcEeeEEEEccCCCCcccEEEEEEEE
Confidence 99999999997643 2578999987532 336799998875
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=155.57 Aligned_cols=118 Identities=26% Similarity=0.394 Sum_probs=101.2
Q ss_pred cEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCee-eEeeeecCCCCCeee
Q 004208 39 EFLYVRIVRARDLQVNQ------------------------------VTGTCDPYVEVKIGNYK-GTTIPFEKKLNPEWN 87 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d------------------------------~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~Wn 87 (768)
|.|.|+|++|++|+++| ..|.+||||+|.+++.+ .+|++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 78999999999999887 35679999999999854 699999999999999
Q ss_pred eEEEEEeccCCCceEEEEEEEcCCCCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCC--ccceEEEEEEEE
Q 004208 88 QVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS--RARGELMFAIWF 162 (768)
Q Consensus 88 e~f~f~~~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~G~i~l~i~~ 162 (768)
|+|.|.+... ...|.|+|||.+..++++||++.+++.++..+. ...+|++|.+..+. +..|+|++++.|
T Consensus 87 E~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~-----~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGE-----PVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred eEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCC-----CcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 9999998765 568999999999887899999999999997653 35799999876543 345899998876
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=151.28 Aligned_cols=114 Identities=27% Similarity=0.528 Sum_probs=99.9
Q ss_pred cEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC
Q 004208 39 EFLYVRIVRARDLQVNQV------TGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV 112 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~------~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~ 112 (768)
|.|.|+|++|+||+..|. .|.+||||+++++++..+|++++++.||+|||+|.|.+.+.....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998774 36899999999999999999999999999999999998776678999999999988
Q ss_pred CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEE
Q 004208 113 NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIW 161 (768)
Q Consensus 113 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~ 161 (768)
++++||++.+++.++..+. ...+|++|.+. ..|+|++.+.
T Consensus 81 ~~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~----~~G~~~~~~~ 120 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKKG-----FIDEWLPLEDV----KSGRLHLKLE 120 (121)
T ss_pred CCCcEEEEEEEHHHhcccC-----ccceEEECcCC----CCceEEEEEe
Confidence 8999999999999987542 35799999864 3488988764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=150.42 Aligned_cols=116 Identities=27% Similarity=0.405 Sum_probs=100.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCceeE
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFIG 118 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~lG 118 (768)
.|+|+|++|++|+..|..+.+||||++++++.+.+|++++++.||+|||+|.|.+.+.....|.|+|||++.. ++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 3899999999999999888999999999999999999999999999999999998776578899999999988 899999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCeEEEcccCCC-----CccceEEEEEE
Q 004208 119 KIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG-----SRARGELMFAI 160 (768)
Q Consensus 119 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-----~~~~G~i~l~i 160 (768)
++.+++.++.... ....|+.|.+... .+..|.|.+.|
T Consensus 81 ~~~~~l~~l~~~~-----~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAK-----QEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCC-----CCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999986542 2478999986432 23678888765
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=150.99 Aligned_cols=117 Identities=18% Similarity=0.310 Sum_probs=100.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCcee
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGN--YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFI 117 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~l 117 (768)
|.|+|++|+||+. ..|.+||||++.+++ ++.+|+++++|.||+|||+|.|.+... ...|.|+|||++.. +|++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPN-SKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCC-CCEEEEEEEECCCCCCCceE
Confidence 6799999999987 678999999999984 678999999999999999999998643 67899999999998 89999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC--CccceEEEEEEEEccc
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG--SRARGELMFAIWFGTQ 165 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~i~~~~~ 165 (768)
|++.+++.++..... ..+|++|.+..+ ....|+|.+.+.|...
T Consensus 78 G~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 78 GLAIVPFDELRKNPS-----GRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEeHHHhccCCc-----eeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 999999999876532 468999987643 3478999999988643
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.9e-18 Score=148.26 Aligned_cols=103 Identities=23% Similarity=0.399 Sum_probs=92.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCceeEE
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGK 119 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~lG~ 119 (768)
.|.|+|++|++|+..+..+.+||||++++++++.+|+++++|.||+|||+|.|.+.+.....|.|+|||.+. +++||+
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~ 78 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGS 78 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEE
Confidence 389999999999999888999999999999999999999999999999999999988767899999999986 899999
Q ss_pred EEEcCCCCCCCCCCCCCCCCeEEEcccC
Q 004208 120 IKIDMPDIPKRVPPDSPLAPEWKRLEAK 147 (768)
Q Consensus 120 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 147 (768)
+.++|.++.... .....+||+|.+.
T Consensus 79 ~~i~l~~l~~~~---~~~~~~w~~L~~~ 103 (105)
T cd04050 79 LTLPLSELLKEP---DLTLDQPFPLDNS 103 (105)
T ss_pred EEEEHHHhhccc---cceeeeeEecCCC
Confidence 999999997652 2346899999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=150.48 Aligned_cols=105 Identities=15% Similarity=0.248 Sum_probs=90.3
Q ss_pred CeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeC---CCcEEEEE
Q 004208 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYD---PYTVITLV 429 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~---~~~~l~v~ 429 (768)
+..|.|.|+|++|+||++.+ ...|.+||||++++.+ ...||++++++.||.|||+|.|.+.. ....|.|+
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~--~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGD--EAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred CCCCeEEEEEEEecCCCccC--CCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 34567999999999998852 2357899999999942 35799999999999999999999875 24589999
Q ss_pred EEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEee
Q 004208 430 VFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468 (768)
Q Consensus 430 v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 468 (768)
|||++.++ ++++||.+.|+|.++...+..+.||||
T Consensus 90 V~d~~~~~----~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 90 VWHYDRFG----RNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EEECCCCC----CCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999865 899999999999999998888999998
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=151.05 Aligned_cols=119 Identities=26% Similarity=0.425 Sum_probs=101.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCC-CcEEEEEEEeCCCCCCCC
Q 004208 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDP-YTVITLVVFDNCHLHPGG 440 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~-~~~l~v~v~d~~~~~~~~ 440 (768)
+|+|+|++|+||..+ +..+.+||||++++++..++|++++++.||.|||+|.|.+.+. ...|.|+|||++.++
T Consensus 1 ~L~v~vi~a~~L~~~---d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~--- 74 (123)
T cd04025 1 RLRCHVLEARDLAPK---DRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS--- 74 (123)
T ss_pred CEEEEEEEeeCCCCC---CCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC---
Confidence 389999999999885 5667899999999999999999999999999999999999875 468999999999865
Q ss_pred CCCCceEEEEEeccccccCceeeeeEeeeecCCC---CcccccEEEEEEE
Q 004208 441 AKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPN---GVKKMGEVQLAVR 487 (768)
Q Consensus 441 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---g~~~~G~i~l~~~ 487 (768)
+|++||.+.++|+++..+.....||.|...... ..+..|.|++.|+
T Consensus 75 -~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 75 -KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred -CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 789999999999999877666889999754322 2345688888763
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.74 E-value=9e-18 Score=151.14 Aligned_cols=114 Identities=18% Similarity=0.264 Sum_probs=98.1
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeEeeeecCCCCCeeeeEEEEEec--c
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN------YKGTTIPFEKKLNPEWNQVFAFTKE--R 96 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~Wne~f~f~~~--~ 96 (768)
...+++.|+. ..+.|.|+|++|+||+..+..|.+||||++++-+ .+++|++++++.||+|||+|.|++. +
T Consensus 2 ~i~~sL~Y~~--~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~ 79 (124)
T cd08680 2 QVQIGLRYDS--GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTK 79 (124)
T ss_pred eEEEEEEECC--CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHH
Confidence 3578889996 4579999999999999988889999999999863 3679999999999999999999974 5
Q ss_pred CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEc
Q 004208 97 LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRL 144 (768)
Q Consensus 97 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 144 (768)
+....|.|.|||++.. ++++||++.|+|.++....+ ....||+|
T Consensus 80 L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~----~~~~Wy~l 124 (124)
T cd08680 80 LYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEE----MSTKWYNL 124 (124)
T ss_pred hhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCc----cccccccC
Confidence 6678999999999988 89999999999999965532 25788875
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=151.59 Aligned_cols=105 Identities=19% Similarity=0.331 Sum_probs=89.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEE-eCC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVF-DNC 434 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~-d~~ 434 (768)
|.|.|+|++|+||.+.+ +..|.+||||++++.+ .+.||+++++++||.|||+|.|.+......|.|+|| |++
T Consensus 29 ~~L~V~Vi~ArnL~~~~--~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 29 GQLEVEVIRARGLVQKP--GSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CEEEEEEEEeeCCCccc--CCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 46999999999998752 3467899999999933 268999999999999999999999865669999999 566
Q ss_pred CCCCCCCCCCceEEEEEeccccccCceeeeeEeeeec
Q 004208 435 HLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVAL 471 (768)
Q Consensus 435 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 471 (768)
.++ ++++||.+.|+|+++..+.....||+|...
T Consensus 107 ~~~----~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 107 RMD----KKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCC----CCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 543 889999999999999877777899999754
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=152.14 Aligned_cols=115 Identities=25% Similarity=0.497 Sum_probs=99.5
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEEecc--CC
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKER--LQ 98 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~~~~--~~ 98 (768)
|..++++.|+- +.+.|.|+|++|+||+..|..|.+||||++++.+ ..++|++++++.||+|||+|.|.+.. +.
T Consensus 3 G~l~~sl~y~~--~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~ 80 (124)
T cd08387 3 GELHFSLEYDK--DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELP 80 (124)
T ss_pred CEEEEEEEECC--CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhC
Confidence 35678888885 5689999999999999999999999999999952 46899999999999999999999753 34
Q ss_pred CceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 99 AISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 99 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
...|.|+|||++.+ ++++||++.+++.++..+. ....|++|.
T Consensus 81 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08387 81 KRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSE-----KLDLWRKIQ 123 (124)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEEecccccCCC-----CcceEEECc
Confidence 57899999999988 8999999999999998653 257899985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=151.75 Aligned_cols=115 Identities=30% Similarity=0.455 Sum_probs=99.1
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEEecc--CC
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKER--LQ 98 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~~~~--~~ 98 (768)
|...+++.|+.. .+.|.|+|++|+||+..+..|.+||||++.+.+ .+.+|++++++.||+|||+|.|.+.. +.
T Consensus 3 G~l~~~l~y~~~--~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~ 80 (124)
T cd08385 3 GKLQFSLDYDFQ--SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELG 80 (124)
T ss_pred cEEEEEEEEeCC--CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhC
Confidence 356788888864 478999999999999999889999999999864 46799999999999999999999753 44
Q ss_pred CceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 99 AISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 99 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
...|.|+|||++.+ ++++||++.+++.++..+. ...+|++|+
T Consensus 81 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08385 81 NKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGH-----VTEEWRDLE 123 (124)
T ss_pred CCEEEEEEEeCCCCCCCceeEEEEEecCcccCCC-----CcceEEEcc
Confidence 57899999999988 8999999999999987642 357999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=152.01 Aligned_cols=117 Identities=23% Similarity=0.297 Sum_probs=97.0
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEE-ec--c
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVT-GTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFT-KE--R 96 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~-~~--~ 96 (768)
|...+++.|+.. .+.|.|+|++|+||+..+.. |.+||||++.+.+ ++.||++++++.||+|||+|.|. +. +
T Consensus 3 G~l~~~l~y~~~--~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~ 80 (128)
T cd08388 3 GTLFFSLRYNSE--KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQ 80 (128)
T ss_pred eEEEEEEEEECC--CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHH
Confidence 356888999964 57999999999999998875 8999999999963 46799999999999999999994 43 3
Q ss_pred CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 97 LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 97 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
.....|.|+|||+|.. +|++||++.++|.++...... ....|.+|.
T Consensus 81 ~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~---~~~~~~~~~ 127 (128)
T cd08388 81 LQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEG---ELLVSREIQ 127 (128)
T ss_pred hCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCc---eEEEEEecc
Confidence 4456899999999988 999999999999999765221 146787765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=147.64 Aligned_cols=105 Identities=27% Similarity=0.381 Sum_probs=92.0
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccC----CCceEEEEEEEcCCC
Q 004208 37 QMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERL----QAISVELLVKDKMIV 112 (768)
Q Consensus 37 ~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~----~~~~L~i~V~d~~~~ 112 (768)
+.+.|+|+|++|++|+ .|.+||||++++++++.+|++++++.||.|||+|.|.+... ....|.|+|||++..
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 4678999999999998 57899999999999999999999999999999999997532 356899999999988
Q ss_pred -CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccC
Q 004208 113 -NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAK 147 (768)
Q Consensus 113 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 147 (768)
+|++||++.++|.++..+ +++.....|++|.++
T Consensus 78 ~~~~~iG~~~i~l~~v~~~--~~~~~~~~w~~L~~~ 111 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQ--PDHAFLRKWLLLTDP 111 (111)
T ss_pred ccCCccEEEEECCccccCC--CCCcceEEEEEeeCc
Confidence 899999999999999765 344567899999863
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=181.03 Aligned_cols=177 Identities=20% Similarity=0.259 Sum_probs=147.5
Q ss_pred cchhhhHHHHHHHHhhHHHHHHhhccccccccchhHHHHHHHHHHHHHcchh---HHHHHHHHHHHHHhhhcccCCCCCC
Q 004208 560 RRGKANLARLMRFLNGFGVAWIWFDQVRRWKNPMTTTFVHVFYVIMVLFPQM---ILATFFFILFGVVIMKFKRRPRHPP 636 (768)
Q Consensus 560 ~~~~~n~~rl~~~~~~~~~~~~~~~~i~~W~~p~~t~~~~~~~~~~v~~p~l---~lp~~~l~l~~~~~~~~~~~~~~~~ 636 (768)
.-+-+|++-+++++.|+..++.+++.+.+|++|.+|+ +|+++..++.|.+| ++|++++++++.|+|..+...
T Consensus 483 eGI~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~-~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~---- 557 (683)
T PF04842_consen 483 EGIDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTL-VFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGR---- 557 (683)
T ss_pred cCCccHHHHHHhccccHHHHHHHHHHHhhccCcchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----
Confidence 3355899999999999999999999999999999994 45556666777776 699999999999999666411
Q ss_pred CCCcccccccCCCCCCCccccCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCchhHHHHHHH
Q 004208 637 HMDIKLSFADKAHPDELDEEFDT-FPSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQSLIDWRDPRATAMFSIF 715 (768)
Q Consensus 637 ~~~~~~s~~~~~~~~~~~~e~d~-~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~~l~~w~~p~~t~~~~~~ 715 (768)
.+...++... .|+.++. .+++-++|+.+.++++.++.++.++.|+|.++.|..|++|..++++
T Consensus 558 -------------~g~~~~~v~V~~pP~~nT---vEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~ 621 (683)
T PF04842_consen 558 -------------LGKSFGEVTVRDPPPKNT---VEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALA 621 (683)
T ss_pred -------------cCCccceEEecCCCCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 1122222222 2555555 8889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHhhhhhhhee-cccCCCccCCCCCchhHHHhcC
Q 004208 716 CLMAAVVFYIVPLWILLLFAGPF-VMRHPRFRIDIPALPQNFLRRL 760 (768)
Q Consensus 716 l~~~~~v~~~vP~r~i~l~~g~~-~~r~P~~r~~~~~~~~~~~~rl 760 (768)
++++|+++.++|+||++++..+. |+|+..+|+ .....|.|||
T Consensus 622 Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr---~s~er~~RRl 664 (683)
T PF04842_consen 622 LLGLAAVLAVVPFKYILLFVFLEVFTRESPFRR---ESSERFNRRL 664 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch---hhHHHHHHHH
Confidence 99999999999999999998888 889888997 5777776664
|
|
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=148.79 Aligned_cols=100 Identities=29% Similarity=0.381 Sum_probs=87.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEeeecccCCCCCCcccceEEEEe-c--CCCCCcEEEEEEecc
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFG-----NVVLKTTVSAKKTVNPTWNEDLMFVA-A--EPFDDPLILTVEDKL 272 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg-----~~~~~T~~i~~~t~nP~wne~f~f~~-~--~~~~~~L~i~V~d~d 272 (768)
.|.|.|++|+||+..+ .+.+||||++++. ..+.+|+++++ +.||.|||+|.|.+ . +.....|.|+|||++
T Consensus 14 ~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 14 TLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRK-TRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred EEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCC-CCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 5999999999999999 8899999999995 35789999987 99999999999986 2 235668999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEc
Q 004208 273 GDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNL 306 (768)
Q Consensus 273 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L 306 (768)
..+++++||++.++|+++.. ......||+|
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~----~~~~~~W~~L 121 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDL----SQETEKWYPL 121 (122)
T ss_pred CCcCCcEEEEEEEecccccc----CCCccceEEC
Confidence 98899999999999999873 2446889987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-17 Score=147.76 Aligned_cols=116 Identities=28% Similarity=0.446 Sum_probs=98.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCceeE
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFIG 118 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~lG 118 (768)
|.|+|++|++|...|..|.+||||++++++. ..+|++++++.||+|||+|.|.+... ...|.|+|||++.. +|++||
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCEEE
Confidence 7899999999999999999999999999885 47999999999999999999998654 47899999999998 899999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCeEEEcccCCC-CccceEEEEEEE
Q 004208 119 KIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG-SRARGELMFAIW 161 (768)
Q Consensus 119 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~i~ 161 (768)
++.+++..+.... ....+|++|.+..+ ....|+|++.+.
T Consensus 81 ~~~~~~~~~~~~~----~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 81 KVSLTREVISAHP----RGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEcHHHhccCC----CCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999988876431 12578999986532 236799988764
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-17 Score=151.70 Aligned_cols=118 Identities=25% Similarity=0.435 Sum_probs=100.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-------eeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-------WVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCH 435 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-------~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~ 435 (768)
|+|+|++|+||+.. +..|.+||||++++++. .++|++++++.||.|||.|.|.+......|.|+|||++.
T Consensus 2 L~v~Vi~a~~L~~~---d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~ 78 (133)
T cd04033 2 LRVKVLAGIDLAKK---DIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENR 78 (133)
T ss_pred EEEEEEEeECCCcc---cCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCC
Confidence 89999999999885 66789999999999764 479999999999999999999997766789999999998
Q ss_pred CCCCCCCCCceEEEEEeccccccCce------eeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 436 LHPGGAKDSRIGKVRIRLSTLETDRI------YTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 436 ~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
++ +|++||++.++++++..+.. ...||+|..... ..+..|+|++++.|
T Consensus 79 ~~----~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 LT----RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSS-KSRVKGHLRLYMAY 132 (133)
T ss_pred CC----CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCC-CCcceeEEEEEEee
Confidence 65 89999999999999887543 358999985433 33456999999987
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-17 Score=153.43 Aligned_cols=104 Identities=22% Similarity=0.416 Sum_probs=88.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec---------------cCCC
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE---------------RLQA 99 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~---------------~~~~ 99 (768)
.|.|+|++|+||.. .+|.+||||+|++.+ .+.+|+++++|.||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38999999999987 578999999999987 5679999999999999999999984 2334
Q ss_pred ceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 100 ISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 100 ~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
..|.|+|||++.. +|+|||++.|++..+..+. .....||+|.+..+
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~----~~~~~W~~L~~~~~ 125 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQA----GSHQAWYFLQPREE 125 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccC----CcCcceeecCCccc
Confidence 6899999999988 9999999999999987651 12578999987643
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-17 Score=147.52 Aligned_cols=117 Identities=29% Similarity=0.504 Sum_probs=100.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGA 441 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~~ 441 (768)
|.|.|++|+||.++ +..|.+||||+++++++ ..||++++++.||.|||.|.|.+.+....|.|+|||++.++
T Consensus 2 l~v~vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~---- 74 (121)
T cd04054 2 LYIRIVEGKNLPAK---DITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS---- 74 (121)
T ss_pred EEEEEEEeeCCcCC---CCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC----
Confidence 78999999999986 66789999999999876 47999999999999999999999877789999999999865
Q ss_pred CCCceEEEEEeccccccC-ceeeeeEeeeecCCCCcccccEEEEEEE
Q 004208 442 KDSRIGKVRIRLSTLETD-RIYTHSYPLVALLPNGVKKMGEVQLAVR 487 (768)
Q Consensus 442 ~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 487 (768)
+|++||++.+++.++..+ .....|++|...+..+ +..|+|++.++
T Consensus 75 ~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~-~~~G~i~l~~~ 120 (121)
T cd04054 75 RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGEIHLELS 120 (121)
T ss_pred CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCC-ccccEEEEEEE
Confidence 899999999999988764 3467999997654333 35699998875
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-17 Score=143.54 Aligned_cols=101 Identities=26% Similarity=0.394 Sum_probs=82.5
Q ss_pred CeeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEec
Q 004208 198 KLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN----VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDK 271 (768)
Q Consensus 198 ~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~----~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~ 271 (768)
..+.|+|+|++|+||+ . .|.+||||++++.. .+.+|++.++ |+||+|||+|.|.+... ....|.|+|||+
T Consensus 12 ~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rk-tlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~ 87 (118)
T cd08677 12 QKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKL-ALHTQWEEELVFPLPEEESLDGTLTLTLRCC 87 (118)
T ss_pred cCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecC-CCCCccccEEEEeCCHHHhCCcEEEEEEEeC
Confidence 3457999999999998 2 35699999999942 5778888887 99999999999998653 456799999999
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceeEEc
Q 004208 272 LGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNL 306 (768)
Q Consensus 272 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L 306 (768)
|.++++++||++.++++++.. .....+|..|
T Consensus 88 Drfs~~d~IG~v~l~l~~~~~----~~~~~~W~~~ 118 (118)
T cd08677 88 DRFSRHSTLGELRLKLADVSM----MLGAAQWVDL 118 (118)
T ss_pred CCCCCCceEEEEEEccccccC----CccccchhcC
Confidence 999999999999999998642 1234567543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-17 Score=148.52 Aligned_cols=112 Identities=25% Similarity=0.339 Sum_probs=97.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCC-CcEEEEEEEeCCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDP-YTVITLVVFDNCHLHPGGA 441 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~-~~~l~v~v~d~~~~~~~~~ 441 (768)
|+|.|++|+||+.+ .+||||++.++++..||++++++.||.|||+|.|.+.++ ...|.++|||++..
T Consensus 2 L~V~Vi~a~~L~~~-------~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~----- 69 (121)
T cd08378 2 LYVRVVKARGLPAN-------SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA----- 69 (121)
T ss_pred EEEEEEEecCCCcc-------cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-----
Confidence 89999999999872 689999999999999999999999999999999999874 56899999999863
Q ss_pred CCCceEEEEEeccccccCc-----eeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 442 KDSRIGKVRIRLSTLETDR-----IYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 442 ~d~~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
+|++||++.++|+++..+. ....||+|.... +.+..|+|+|.+.|
T Consensus 70 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~--~~~~~G~i~l~~~~ 119 (121)
T cd08378 70 KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK--GGRVGGELMLAVWF 119 (121)
T ss_pred cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCC--CCccceEEEEEEEe
Confidence 5889999999999987532 356899997653 34567999999987
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.6e-17 Score=148.62 Aligned_cols=113 Identities=28% Similarity=0.489 Sum_probs=98.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCC--------
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMI-------- 111 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~-------- 111 (768)
.|.|+|++|++|+..|..|.+||||++++++++.+|++++++.||+|||+|.|.+... ...|.|+|||+|.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccce
Confidence 5899999999999999889999999999999999999999999999999999998654 5689999999985
Q ss_pred ----CCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCC-ccceEEEEEE
Q 004208 112 ----VNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS-RARGELMFAI 160 (768)
Q Consensus 112 ----~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~i 160 (768)
..+++||++.+++.++... ..+|+.|.+..+. ...|+|.+++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~~~-------~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHccCC-------CCeEEECccCCCCCcEeEEEEEEC
Confidence 2689999999999987532 4799999976543 4789998863
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-17 Score=151.45 Aligned_cols=114 Identities=33% Similarity=0.516 Sum_probs=96.4
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec---
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE--- 95 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~--- 95 (768)
|..++++.|+.. .+.|.|+|++|+||+..+..+.+||||++++.+ .+.+|++++++.||+|||+|.|.+.
T Consensus 3 G~l~~~l~~~~~--~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 80 (125)
T cd04031 3 GRIQIQLWYDKV--TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRE 80 (125)
T ss_pred EEEEEEEEEeCC--CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHH
Confidence 346788888864 578999999999999998889999999999975 5779999999999999999999853
Q ss_pred cCCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 96 RLQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 96 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
++....|.|+|||++.. ++++||++.++|.+.... ....||+|+
T Consensus 81 ~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~------~~~~W~~L~ 125 (125)
T cd04031 81 TLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLD------DEPHWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccccc------CCcceEECc
Confidence 33467899999999988 899999999999983322 146899985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-17 Score=148.53 Aligned_cols=103 Identities=26% Similarity=0.357 Sum_probs=88.2
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEec
Q 004208 200 WYLRVNVIEAQDLVPKQRN-RNPEVFIKAIFG-----NVVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDK 271 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~-~~~dpyV~v~lg-----~~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~ 271 (768)
+.|.|+|++|+||+.++.. |.+||||++++. ..+.+|+++++ +.||+|||+|.|.+... ....|.|+|||+
T Consensus 15 ~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 15 RELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKK-TLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcC-CCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 3599999999999999875 889999999993 24579999987 99999999999998642 456899999999
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceeEEcc
Q 004208 272 LGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLE 307 (768)
Q Consensus 272 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 307 (768)
+..+++++||++.++|.++.. ......||+|+
T Consensus 94 ~~~~~~~~iG~~~i~L~~~~~----~~~~~~W~~L~ 125 (125)
T cd08393 94 DSLGRNSFLGEVEVDLGSWDW----SNTQPTWYPLQ 125 (125)
T ss_pred CCCCCCcEeEEEEEecCcccc----CCCCcceEECc
Confidence 999999999999999999863 24567899874
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-17 Score=148.58 Aligned_cols=117 Identities=25% Similarity=0.509 Sum_probs=100.1
Q ss_pred eEEEEEEEEecCCCCCCCCC---CCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeC-CCcEEEEEEEeCCCC
Q 004208 361 GVLELGILSAKELLPMKSRD---GRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYD-PYTVITLVVFDNCHL 436 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~---~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~-~~~~l~v~v~d~~~~ 436 (768)
|.|+|.|++|+||+..+... ..|.+||||+++++++.++|++++++.||.|||.|.|.+.+ +...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 67999999999999864211 14689999999999999999999999999999999999986 467999999999873
Q ss_pred CCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 437 HPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 437 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
+|++||++.++|+++..+.....||+|... ..|+|+|++++
T Consensus 81 -----~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 81 -----KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred -----CCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 688999999999999888777899999643 45999988763
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.6e-17 Score=146.30 Aligned_cols=120 Identities=20% Similarity=0.286 Sum_probs=101.4
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCC
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPG 439 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~ 439 (768)
.+.|+|+|++|+||... +..|.+||||++.++++.+||++++++.||.|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~~~~V~v~~A~~L~~~---d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~--- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQ---DSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL--- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCC---CCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC---
Confidence 35799999999999885 677899999999999999999999999999999999999988888999999999874
Q ss_pred CCCCCceEEEEEeccccccCceeeeeEeeeecC-CCCcccccEEEEEEEEE
Q 004208 440 GAKDSRIGKVRIRLSTLETDRIYTHSYPLVALL-PNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 440 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-~~g~~~~G~i~l~~~~~ 489 (768)
+|++||++.++++.+..+. ..+|+|.... ....+..|+|.+++...
T Consensus 76 --~d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 76 --CDEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred --CCCceEEEEEecccCCCcC--ceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 4899999999999865433 4788886332 13445679999998773
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-17 Score=146.02 Aligned_cols=113 Identities=23% Similarity=0.366 Sum_probs=97.9
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC---eeeeeccccCCCCCccccEEEEEEeCC-CcEEEEEEEeCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYAN---KWVRTRTVVDSFDPKWNEQYTWEVYDP-YTVITLVVFDNCHLHP 438 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~---~~~~T~~~~~t~nP~wne~~~~~v~~~-~~~l~v~v~d~~~~~~ 438 (768)
|+|+|++|+||+.. +..+.+||||++++++ +.+||++++++.||.|||.|.|.+... ...|.|+|||++.+
T Consensus 2 L~V~vi~a~~L~~~---~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-- 76 (119)
T cd04036 2 LTVRVLRATNITKG---DLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-- 76 (119)
T ss_pred eEEEEEEeeCCCcc---CCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC--
Confidence 78999999999885 5678999999999963 679999999999999999999999764 45799999999873
Q ss_pred CCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 439 GGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 439 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
+|++||++.++++++..+.....||+|... ..|++++++.++
T Consensus 77 ---~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~------~~g~l~~~~~~~ 118 (119)
T cd04036 77 ---MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ------GKEELEVEFLLE 118 (119)
T ss_pred ---CCcccEEEEEEHHHCCCCCcEEEEEECCCC------CCceEEEEEEee
Confidence 688999999999999999888999999532 358899888764
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.3e-17 Score=149.30 Aligned_cols=115 Identities=24% Similarity=0.410 Sum_probs=98.9
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec--c
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE--R 96 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~--~ 96 (768)
|..++++.|+- ..+.|.|+|++|+||+..+..+.+||||++.+.+ .+++|++++++.||+|||+|.|.+. +
T Consensus 3 G~l~~~l~y~~--~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 3 GRIQLTIRYSS--QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred eEEEEEEEEeC--CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 35688889985 4689999999999999999889999999999963 5789999999999999999999974 4
Q ss_pred CCCceEEEEEEEcCCC---CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 97 LQAISVELLVKDKMIV---NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 97 ~~~~~L~i~V~d~~~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
+....|.|.|||.+.. ++++||++.+++.++..+. ....||+|+
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~ 127 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK-----GFTQWYDLT 127 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccC-----CccceEECc
Confidence 4567899999999873 7999999999999996652 357899884
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.7e-16 Score=173.23 Aligned_cols=285 Identities=18% Similarity=0.270 Sum_probs=183.0
Q ss_pred CCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--EeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCC
Q 004208 197 PKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVV--LKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGD 274 (768)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~~--~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~ 274 (768)
|...-++|.|++|-+|.+.|.+|.+||||.+.+|++. -++..+.+ |+||+|++.|.+....+.+..+.++|||+|..
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLIVEVYDHDLE 688 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccchhhcceeEEEEeecc
Confidence 5566799999999999999999999999999999876 45566777 99999999999999988899999999999999
Q ss_pred CCCceeEEEEEeccc-cccccCCCCCCceeEEcccCccCcc---------------ccccccccceEEEEEecCCCcccc
Q 004208 275 NKEECLGRLVLPLSK-AGKRFLPLPAAAIWYNLERNIANGE---------------EKKDVRFASRICLRFSLDGGYHVF 338 (768)
Q Consensus 275 ~~d~~lG~~~i~l~~-l~~~~~~~~~~~~w~~L~~~~~~g~---------------~~~~~~~~g~i~l~v~~~~~~~~~ 338 (768)
+.|+.||+..++|+. +......+....+-|...+....-+ ....-.+.+.. ..+.+.|.....
T Consensus 689 ~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~~ 767 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDIY 767 (1105)
T ss_pred cccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhhh
Confidence 999999999999865 2222222233333332222110000 00000000110 111111110000
Q ss_pred c-------------------------------Ccc---cccCccccc----cccCC------------------CCeeeE
Q 004208 339 D-------------------------------EAT---NYSSDLRST----MKQLW------------------PPVIGV 362 (768)
Q Consensus 339 ~-------------------------------~~~---~~~~~~~~~----~~~l~------------------~~~~g~ 362 (768)
+ +.. ...++..|. .-++| .+....
T Consensus 768 d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~ 847 (1105)
T KOG1326|consen 768 DEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYE 847 (1105)
T ss_pred cccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhhee
Confidence 0 000 000000000 00111 345567
Q ss_pred EEEEEEEecCCCCCCCCCCCC--CcCcEEEEEe-cC--eeeeeccccCCC----CCccccEEEEEE--------------
Q 004208 363 LELGILSAKELLPMKSRDGRG--TTDAYCVAKY-AN--KWVRTRTVVDSF----DPKWNEQYTWEV-------------- 419 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g--~~dpyv~v~~-g~--~~~~T~~~~~t~----nP~wne~~~~~v-------------- 419 (768)
++|.|..-.++..-+. ++.| .+|.||+--+ |. ++.+|.+.++++ |-.|.-.|.|.-
T Consensus 848 lrviiWnt~~v~l~dd-~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~ 926 (1105)
T KOG1326|consen 848 LRVIIWNTDKVRLNDD-EITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEY 926 (1105)
T ss_pred EEEEEeeccceeecCc-cceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhh
Confidence 9999998888776432 2333 6999999555 44 458888887654 556643333311
Q ss_pred ----eC----CCcEEEEEEEeCCCCCCCCCCCCceEEEEEecccccc----------------------CceeeeeEeee
Q 004208 420 ----YD----PYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLET----------------------DRIYTHSYPLV 469 (768)
Q Consensus 420 ----~~----~~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~----------------------~~~~~~~~~L~ 469 (768)
.+ .-..|.|+|||.|.|+ +|++||..+++|+++.. .+.+.+|+|+.
T Consensus 927 ~ws~dete~k~p~rl~iqiWD~d~fs----~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~ 1002 (1105)
T KOG1326|consen 927 SWSLDETEFKIPARLIIQIWDNDKFS----KDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQ 1002 (1105)
T ss_pred ccccccccccCchheEEEecccCccC----hhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceee
Confidence 00 0136999999999988 99999999999998652 34578999999
Q ss_pred ecCCCCcccccEEEEEEEE
Q 004208 470 ALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 470 ~~~~~g~~~~G~i~l~~~~ 488 (768)
+.+.....-+|++++.+.+
T Consensus 1003 a~~~~~~~l~Gkvem~lei 1021 (1105)
T KOG1326|consen 1003 AEEGDAKVLAGKVEMSLEI 1021 (1105)
T ss_pred ecCCCcceecceeeeehhh
Confidence 8854444468999988877
|
|
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.7e-17 Score=145.87 Aligned_cols=106 Identities=23% Similarity=0.325 Sum_probs=89.2
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEec
Q 004208 200 WYLRVNVIEAQDLVPKQRN-RNPEVFIKAIFG-----NVVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDK 271 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~-~~~dpyV~v~lg-----~~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~ 271 (768)
+.|.|+|++|+||+.++.. |.+||||++++. ..+.||+++++ +.||+|||+|.|.+... ....|.+.|||.
T Consensus 15 ~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 15 SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 3699999999999999875 899999999993 24779999987 99999999999997553 346899999999
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceeEEcc
Q 004208 272 LGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLE 307 (768)
Q Consensus 272 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 307 (768)
+..+++++||++.|+|+++... +......+||+|.
T Consensus 94 ~~~~~~~~lG~~~i~L~~~~~~-~~~~~~~~W~~l~ 128 (128)
T cd08392 94 RTLKRRVFLGEVLIPLADWDFE-DTDSQRFLWYPLN 128 (128)
T ss_pred CCCcCcceEEEEEEEcCCcccC-CCCccccceEECc
Confidence 9888999999999999998532 2245678999874
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-17 Score=147.92 Aligned_cols=115 Identities=19% Similarity=0.292 Sum_probs=98.3
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEE-ec--cC
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFT-KE--RL 97 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~-~~--~~ 97 (768)
|...+++.|+.. .+.|.|+|++|+||+..+.+|.+||||++.+.+ ++.+|+++++ .||+|||+|.|. +. ++
T Consensus 3 G~l~~sl~Y~~~--~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l 79 (124)
T cd08389 3 GDLDVAFEYDPS--ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEEL 79 (124)
T ss_pred EEEEEEEEECCC--CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHh
Confidence 356889999964 478999999999999999889999999988754 5779998887 999999999998 53 45
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEccc
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEA 146 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 146 (768)
....|.|+|||++.. ++++||++.|+|.++.... ....|++|++
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~-----~~~~w~~L~p 124 (124)
T cd08389 80 NNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEG-----ETTVWLTLEP 124 (124)
T ss_pred ccCEEEEEEEECCCcccCceEEEEEEeccccCCCC-----CceEEEeCCC
Confidence 578899999999988 8999999999999996652 3689999873
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-17 Score=146.90 Aligned_cols=109 Identities=18% Similarity=0.373 Sum_probs=90.1
Q ss_pred CcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccC-CC
Q 004208 26 ERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERL-QA 99 (768)
Q Consensus 26 ~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~-~~ 99 (768)
.++++.|. .+.|.|+|++|+||+..+ .|.+||||++++.+ .+.+|++++++.||+|||+|.|.+... ..
T Consensus 3 l~l~~~~~----~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~ 77 (119)
T cd08685 3 LKLSIEGQ----NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQ 77 (119)
T ss_pred EEEEEEEc----CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhC
Confidence 45555552 478999999999999988 88999999999975 366899999999999999999997532 13
Q ss_pred ceEEEEEEEcCCC--CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEc
Q 004208 100 ISVELLVKDKMIV--NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRL 144 (768)
Q Consensus 100 ~~L~i~V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 144 (768)
..|.|+|||++.. ++++||++.|++.++..+. ....||.|
T Consensus 78 ~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~-----~~~~Wy~l 119 (119)
T cd08685 78 KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQK-----EISGWYYL 119 (119)
T ss_pred CEEEEEEECCCCCcCCCEEEEEEEecHHHhccCc-----cccceEeC
Confidence 5789999999987 4799999999999997542 24789976
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=145.38 Aligned_cols=115 Identities=23% Similarity=0.358 Sum_probs=100.7
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccC--CCceEEEEEEEcCCC-CCceeEEEE
Q 004208 45 IVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERL--QAISVELLVKDKMIV-NGDFIGKIK 121 (768)
Q Consensus 45 i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~--~~~~L~i~V~d~~~~-~d~~lG~~~ 121 (768)
|++|++|+. ..|.+||||++++++.+.+|++++++.||+|||+|.|.+... ....|.|+|||++.. +|++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999987 678999999999999999999999999999999999998653 468999999999988 899999999
Q ss_pred EcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcccC
Q 004208 122 IDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQA 166 (768)
Q Consensus 122 i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~~~ 166 (768)
+++.++..+. ....|++|.+..+....|+|+++++|.+..
T Consensus 80 ~~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 80 VSLQDLVSEG-----LLEVTEPLLDSNGRPTGATISLEVSYQPPD 119 (127)
T ss_pred EEhhHcccCC-----ceEEEEeCcCCCCCcccEEEEEEEEEeCCC
Confidence 9999997652 257899998776655679999999997644
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.8e-17 Score=142.27 Aligned_cols=93 Identities=19% Similarity=0.252 Sum_probs=82.2
Q ss_pred cEEEEEEEEeecCCCCCC----CCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccC-CCceEEEEEEEcCCC-
Q 004208 39 EFLYVRIVRARDLQVNQV----TGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERL-QAISVELLVKDKMIV- 112 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~----~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~-~~~~L~i~V~d~~~~- 112 (768)
|.|.|+|++|++|+..+. .+.+||||+++++++++||++++++.||+|||+|.|.+.+. ....|.|+|||++..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 689999999999998763 23589999999999999999999999999999999998643 245899999999998
Q ss_pred CCceeEEEEEcCCCCCCCC
Q 004208 113 NGDFIGKIKIDMPDIPKRV 131 (768)
Q Consensus 113 ~d~~lG~~~i~l~~l~~~~ 131 (768)
+|++||++.++|.+|..+.
T Consensus 81 ~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCcceEEEEEEHHHHHhhC
Confidence 9999999999999997664
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.4e-17 Score=147.25 Aligned_cols=115 Identities=30% Similarity=0.481 Sum_probs=98.4
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeEeeeecCCCCCeeeeEEEEEe---ccC
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIG---NYKGTTIPFEKKLNPEWNQVFAFTK---ERL 97 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~Wne~f~f~~---~~~ 97 (768)
|...+++.|+.. .+.|.|+|++|+||+..|..+.+||||++.+. +++.+|++++++.||+|||+|.|.+ +.+
T Consensus 3 G~l~~~l~y~~~--~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l 80 (125)
T cd08386 3 GRIQFSVSYDFQ--ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKL 80 (125)
T ss_pred cEEEEEEEECCC--CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHh
Confidence 356788889864 57899999999999999988999999999994 3678999999999999999999974 234
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
....|.|+|||++.. ++++||++.+++.++..+. ....|+.|.
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~l~ 124 (125)
T cd08386 81 QQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTE-----EQTFWKDLK 124 (125)
T ss_pred CCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCC-----CcceEEecC
Confidence 456899999999988 8999999999999997653 257899885
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=144.42 Aligned_cols=114 Identities=18% Similarity=0.293 Sum_probs=97.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-C--Cce
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIG-NYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-N--GDF 116 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~-~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~--d~~ 116 (768)
|+|+|++|++|+..+..+.+||||++.++ .+.++|++++++.||+|||+|.|.+.. ...|.|+|||++.. + |++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCce
Confidence 79999999999999988999999999997 578899999999999999999999976 67999999999987 3 589
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC---CccceEEEEEE
Q 004208 117 IGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG---SRARGELMFAI 160 (768)
Q Consensus 117 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~---~~~~G~i~l~i 160 (768)
||++.+++.++..... ....|++|.+... ....|+|.+++
T Consensus 80 lG~~~i~l~~l~~~~~----~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLKD----TGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccCC----CccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999865432 2467999976653 34678888764
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=144.63 Aligned_cols=103 Identities=21% Similarity=0.394 Sum_probs=90.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEeccCC
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG---NVVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKLGD 274 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg---~~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d~~ 274 (768)
+.|.|+|++|+||+..+..+.+||||++.+. ++..+|+++++ +.||.|||+|.|.+... ....|.|+|||++..
T Consensus 16 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~ 94 (124)
T cd08387 16 GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKK-TLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQF 94 (124)
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcC-CCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCC
Confidence 5799999999999999988999999999993 45789999987 99999999999997654 345799999999988
Q ss_pred CCCceeEEEEEeccccccccCCCCCCceeEEcc
Q 004208 275 NKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLE 307 (768)
Q Consensus 275 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 307 (768)
+++++||++.++++++.. ......||+|+
T Consensus 95 ~~~~~iG~~~i~l~~~~~----~~~~~~W~~l~ 123 (124)
T cd08387 95 SRDECIGVVELPLAEVDL----SEKLDLWRKIQ 123 (124)
T ss_pred CCCceeEEEEEecccccC----CCCcceEEECc
Confidence 899999999999999873 23678899986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=145.38 Aligned_cols=119 Identities=31% Similarity=0.385 Sum_probs=99.8
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC--eeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCC
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN--KWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLH 437 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~--~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~ 437 (768)
+|.|+|+|++|+||+..+ ...+.+||||++++++ +.++|+++.++.||.|||.|.|.+.+..+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~--~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSD--IIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCccc--ccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCC
Confidence 488999999999998631 2446799999999987 789999999999999999999999866789999999998854
Q ss_pred CCCCCCCceEEEEEeccccccCceee-eeEeeeecCCCCcccccEEEEEEEE
Q 004208 438 PGGAKDSRIGKVRIRLSTLETDRIYT-HSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 438 ~~~~~d~~lG~~~i~l~~l~~~~~~~-~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
+|++||++.++|.++..+.... .++++. .+.+..|+|++.++|
T Consensus 79 ----~d~~iG~~~~~l~~l~~~~~~~~~~~~~~----~~~k~~G~i~~~l~~ 122 (124)
T cd04044 79 ----KDKLIGTAEFDLSSLLQNPEQENLTKNLL----RNGKPVGELNYDLRF 122 (124)
T ss_pred ----CCceeEEEEEEHHHhccCccccCcchhhh----cCCccceEEEEEEEe
Confidence 8999999999999999876554 344443 234456999999998
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.6e-17 Score=148.00 Aligned_cols=118 Identities=23% Similarity=0.334 Sum_probs=101.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeEeeeec-CCCCCeeeeEEEEEeccCC----CceEEEEEEEcCCC-
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-YKGTTIPFE-KKLNPEWNQVFAFTKERLQ----AISVELLVKDKMIV- 112 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~-~t~nP~Wne~f~f~~~~~~----~~~L~i~V~d~~~~- 112 (768)
.|.|+|++|++|+..+..+.+||||++++++ ++.+|++.. ++.||+|||+|.|.+.+.. ...|.|+|||++.+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999988889999999999998 888999874 6899999999999987653 68899999999986
Q ss_pred CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEE
Q 004208 113 NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMF 158 (768)
Q Consensus 113 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l 158 (768)
+|++||++.+++.++..+...+......||+|..+.| +..|.|.+
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g-~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG-KPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC-CcCeEEeC
Confidence 8999999999999998765433344678999998664 47898864
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-17 Score=144.50 Aligned_cols=99 Identities=24% Similarity=0.369 Sum_probs=86.4
Q ss_pred cEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEEeccC---CCceEEEEEEEcCC
Q 004208 39 EFLYVRIVRARDLQVNQVT-GTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKERL---QAISVELLVKDKMI 111 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~~~~~---~~~~L~i~V~d~~~ 111 (768)
|.|+|+|++|++|+..|.. +.+||||+|++.+ ...+|+++++|.||+|||+|.|.+... ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999887 8999999999854 467999999999999999999987542 35789999999999
Q ss_pred C-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 112 V-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 112 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
. +|++||++.+++.++... ..|+++.
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~--------~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED--------RNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC--------CCCCccc
Confidence 8 899999999999999743 5677765
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-16 Score=144.38 Aligned_cols=115 Identities=27% Similarity=0.407 Sum_probs=98.4
Q ss_pred cEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCee-eEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEE
Q 004208 39 EFLYVRIVRARDLQVNQVT----------GTCDPYVEVKIGNYK-GTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVK 107 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~----------g~~dPyv~v~~~~~~-~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~ 107 (768)
|.|+|+|++|++|...|.. |.+||||++++++++ .+|+++++|.||.|||+|.|.+.+ ...|.|.||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~~v~ 81 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLELTVF 81 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEEEEE
Confidence 7899999999999988752 689999999999865 699999999999999999999974 578999999
Q ss_pred EcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcc
Q 004208 108 DKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGT 164 (768)
Q Consensus 108 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~ 164 (768)
|.+.. ++++||++.++|.++..+. ......|++|++ .|+|++.+++..
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~---~~~~~~w~~L~~------~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRG---SGSFDLWVDLEP------QGKLHVKIELKG 130 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccC---CCcccEEEEccC------CcEEEEEEEEec
Confidence 99887 8999999999999987631 123589999973 399999888754
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=141.62 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=87.2
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCC
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPG 439 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~ 439 (768)
+|.|.|.|++|++|... +..||||++++|+++.+|++++++ ||.|||.|.|.+.++...|.|+|||++.+
T Consensus 1 m~~L~V~Vv~Ar~L~~~------~~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~--- 70 (127)
T cd08394 1 MSLLCVLVKKAKLDGAP------DKFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI--- 70 (127)
T ss_pred CceEEEEEEEeeCCCCC------CCCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc---
Confidence 36799999999999653 346899999999999999999884 99999999999988877899999999853
Q ss_pred CCCCCceEEEEEeccccccCcee--eeeEeeeec
Q 004208 440 GAKDSRIGKVRIRLSTLETDRIY--THSYPLVAL 471 (768)
Q Consensus 440 ~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~ 471 (768)
.|++||++.|+|+++..+... ..||+|...
T Consensus 71 --~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 71 --WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred --CCCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 799999999999999876544 789999744
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-16 Score=142.38 Aligned_cols=104 Identities=33% Similarity=0.463 Sum_probs=90.5
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeEeeeecCCCCCee-eeEEEEEecc--CCCceEEEEEEEcCCC-CCc
Q 004208 41 LYVRIVRARDLQVNQV-TGTCDPYVEVKIGNYKGTTIPFEKKLNPEW-NQVFAFTKER--LQAISVELLVKDKMIV-NGD 115 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~-~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W-ne~f~f~~~~--~~~~~L~i~V~d~~~~-~d~ 115 (768)
|.|+|++|++|+..+. .|.+||||++++++++.+|++++++.||+| ||+|.|.+.. +....|.|+|||++.. +++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6899999999998884 688999999999999999999999999999 9999999864 3357899999999998 899
Q ss_pred eeEEEEEcCCCCCCCCCCCCCCCCeEEEccc
Q 004208 116 FIGKIKIDMPDIPKRVPPDSPLAPEWKRLEA 146 (768)
Q Consensus 116 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 146 (768)
+||++.+++.++.... +......||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~--~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKD--SVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccC--CccccCCeEEccc
Confidence 9999999999997742 1223689999875
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.2e-17 Score=146.26 Aligned_cols=114 Identities=22% Similarity=0.349 Sum_probs=96.6
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEecc-
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQ-VTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKER- 96 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~- 96 (768)
|...+++.|+- ..+.|.|+|++|+||+..+ ..+.+||||++.+.+ .+.+|++++++.||+|||+|.|.+..
T Consensus 1 G~i~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~ 78 (123)
T cd08521 1 GEIEFSLSYNY--KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKS 78 (123)
T ss_pred CeEEEEEEEeC--CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHH
Confidence 34678888974 4579999999999999988 788999999999843 46799999999999999999999753
Q ss_pred -CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEc
Q 004208 97 -LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRL 144 (768)
Q Consensus 97 -~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 144 (768)
+....|.|+|||++.. ++++||++.++|.++..+. ....||+|
T Consensus 79 ~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~w~~l 123 (123)
T cd08521 79 QLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDS-----QQSEWYPL 123 (123)
T ss_pred HhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccC-----CCccEEEC
Confidence 3467899999999988 8999999999999996542 24789986
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-16 Score=140.22 Aligned_cols=102 Identities=27% Similarity=0.452 Sum_probs=91.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCCCCCceeE
Q 004208 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLG 281 (768)
Q Consensus 202 L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~~~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~~lG 281 (768)
|.|+|++|++|+..+..+.+||||+++++++..+|+++++ +.||.|||.|.|.+..+..+.|.|+|+|++. +++||
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKER-TNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccC-CCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 7899999999999988899999999999999999999987 9999999999999988777889999999875 78999
Q ss_pred EEEEeccccccccCCCCCCceeEEcccC
Q 004208 282 RLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 282 ~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
++.++|.++... ++...++||+|.+.
T Consensus 78 ~~~i~l~~l~~~--~~~~~~~w~~L~~~ 103 (105)
T cd04050 78 SLTLPLSELLKE--PDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEHHHhhcc--ccceeeeeEecCCC
Confidence 999999998753 24467899999876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-16 Score=143.64 Aligned_cols=119 Identities=26% Similarity=0.324 Sum_probs=98.8
Q ss_pred ccEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-C
Q 004208 38 MEFLYVRIVRARDLQVNQ-VTGTCDPYVEVKIGN--YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-N 113 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d-~~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~ 113 (768)
+|.|.|+|++|++|+..+ ..+.+||||++++++ ...+|++++++.||+|||+|.|.+.. ....|.|+|||++.. +
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS-LTEPLNLTVYDFNDKRK 79 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC-CCCEEEEEEEecCCCCC
Confidence 478999999999998655 456799999999998 78999999999999999999999884 378999999999988 9
Q ss_pred CceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEc
Q 004208 114 GDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFG 163 (768)
Q Consensus 114 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~ 163 (768)
|++||++.+++.++..+... ...|..+.. +++..|+|.+++.|.
T Consensus 80 d~~iG~~~~~l~~l~~~~~~----~~~~~~~~~--~~k~~G~i~~~l~~~ 123 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQ----ENLTKNLLR--NGKPVGELNYDLRFF 123 (124)
T ss_pred CceeEEEEEEHHHhccCccc----cCcchhhhc--CCccceEEEEEEEeC
Confidence 99999999999999865321 123444442 344679999999885
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=147.25 Aligned_cols=115 Identities=20% Similarity=0.305 Sum_probs=93.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEe---------------CC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVY---------------DP 422 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~---------------~~ 422 (768)
|.|+|++|+||.. ..|.+||||++++++ ...||++++++.||+|||.|.|.+. +.
T Consensus 2 L~V~Vi~ArnL~~-----~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~ 76 (148)
T cd04010 2 LSVRVIECSDLAL-----KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDA 76 (148)
T ss_pred EEEEEEeCcCCCC-----CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccc
Confidence 8899999999986 347899999999976 5689999999999999999999995 11
Q ss_pred -CcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccC-ceeeeeEeeeecCCC---------CcccccEEEEEE
Q 004208 423 -YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETD-RIYTHSYPLVALLPN---------GVKKMGEVQLAV 486 (768)
Q Consensus 423 -~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~---------g~~~~G~i~l~~ 486 (768)
...|.|.|||++.++ +|++||++.|+|..+..+ .....||+|...... +....|.++|.+
T Consensus 77 ~~~~L~i~V~d~~~~~----~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 77 EKLELRVDLWHASMGG----GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred cEEEEEEEEEcCCCCC----CCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 247999999999754 899999999999999987 556899999754211 223457777764
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=139.83 Aligned_cols=96 Identities=21% Similarity=0.326 Sum_probs=83.4
Q ss_pred eEEEEEEEEecCCCCCCCCC-CCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCC--CcEEEEEEEeCCCCC
Q 004208 361 GVLELGILSAKELLPMKSRD-GRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDP--YTVITLVVFDNCHLH 437 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~-~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~--~~~l~v~v~d~~~~~ 437 (768)
|.|.|+|++|+||++.+... ..+.+||||+++++++.+||++++++.||.|||.|.|.+.+. ...|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 68999999999999875311 224689999999999999999999999999999999999763 348999999999865
Q ss_pred CCCCCCCceEEEEEeccccccCc
Q 004208 438 PGGAKDSRIGKVRIRLSTLETDR 460 (768)
Q Consensus 438 ~~~~~d~~lG~~~i~l~~l~~~~ 460 (768)
+|++||++.++|++|..+.
T Consensus 81 ----~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 ----FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred ----CCcceEEEEEEHHHHHhhC
Confidence 8999999999999998764
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=141.95 Aligned_cols=102 Identities=26% Similarity=0.428 Sum_probs=89.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCcc-ccEEEEEEeCC---CcEEEEEEEeCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKW-NEQYTWEVYDP---YTVITLVVFDNCHLHP 438 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~w-ne~~~~~v~~~---~~~l~v~v~d~~~~~~ 438 (768)
|+|+|++|+||+.++ ...|.+||||+++++++.+||+++++++||.| ||.|.|.+... .+.|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~d--~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~- 77 (110)
T cd08688 1 LKVRVVAARDLPVMD--RSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS- 77 (110)
T ss_pred CEEEEEEEECCCccc--cCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC-
Confidence 579999999999862 14678999999999999999999999999999 99999999863 368999999999865
Q ss_pred CCCCCCceEEEEEecccccc---CceeeeeEeeee
Q 004208 439 GGAKDSRIGKVRIRLSTLET---DRIYTHSYPLVA 470 (768)
Q Consensus 439 ~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~ 470 (768)
+|++||++.+++.++.. +..++.||+|.+
T Consensus 78 ---~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 ---ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ---CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 88999999999999987 345789999864
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-16 Score=143.73 Aligned_cols=115 Identities=26% Similarity=0.365 Sum_probs=98.0
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEEecc--CC
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQ-VTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKER--LQ 98 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d-~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~~~~--~~ 98 (768)
...+++.|+-. .+.|.|+|++|+||+..+ ..+.+||||++++.+ +..+|++++++.||+|||+|.|.+.. +.
T Consensus 2 ~l~~~l~y~~~--~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~ 79 (123)
T cd08390 2 RLWFSVQYDLE--EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQ 79 (123)
T ss_pred EEEEEEEECCC--CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhc
Confidence 45788889864 578999999999999988 688999999999853 56789999999999999999999753 33
Q ss_pred CceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEccc
Q 004208 99 AISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEA 146 (768)
Q Consensus 99 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 146 (768)
...|.|+|||++.. ++++||++.++|.++.... ....|++|++
T Consensus 80 ~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~-----~~~~w~~L~~ 123 (123)
T cd08390 80 RRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVK-----GGVVWRDLEP 123 (123)
T ss_pred ccEEEEEEEECCcCCCCcEEEEEEEeccceecCC-----CceEEEeCCC
Confidence 56899999999988 8999999999999997753 2468999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-16 Score=142.30 Aligned_cols=119 Identities=24% Similarity=0.409 Sum_probs=99.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCc
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGD 115 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~ 115 (768)
.|.|+|++|++|+..+..+.+||||++.+++ ...+|++++++.||.|||+|.|.+.......|.|+|||++.. +++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 6899999999999999899999999999875 357999999999999999999998775567899999999988 899
Q ss_pred eeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcccC
Q 004208 116 FIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQA 166 (768)
Q Consensus 116 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~~~ 166 (768)
+||++.++|..+.... +......|++|.+ .|+|.+.+.+..+.
T Consensus 82 ~iG~~~i~l~~~~~~~--~~~~~~~w~~l~~------~g~i~l~~~~~~~~ 124 (126)
T cd04043 82 LCGRASLKLDPKRFGD--DGLPREIWLDLDT------QGRLLLRVSMEGER 124 (126)
T ss_pred eEEEEEEecCHHHcCC--CCCCceEEEEcCC------CCeEEEEEEEeeec
Confidence 9999999998764331 0123578999974 38888888776543
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-16 Score=141.07 Aligned_cols=101 Identities=16% Similarity=0.294 Sum_probs=86.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEe-c----C--eeeeeccccCCCCCccccEEEEEEeCC----CcEEEEEEE
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKY-A----N--KWVRTRTVVDSFDPKWNEQYTWEVYDP----YTVITLVVF 431 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-g----~--~~~~T~~~~~t~nP~wne~~~~~v~~~----~~~l~v~v~ 431 (768)
|+|.|++|+||+.. + .|.+||||+|++ | . ++++|+++.+++||.|||+|+|.+... ...|.|.||
T Consensus 2 L~V~Vi~A~~L~~~---d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~ 77 (120)
T cd08395 2 VTVKVVAANDLKWQ---T-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVK 77 (120)
T ss_pred EEEEEEECcCCCcc---c-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEE
Confidence 89999999999874 4 489999999997 4 2 347899999999999999999999742 247999999
Q ss_pred eCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeec
Q 004208 432 DNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVAL 471 (768)
Q Consensus 432 d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 471 (768)
|++..+ +|++||++.++|+++..++....|++|...
T Consensus 78 D~d~~~----~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 78 DYCFAR----DDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred EecccC----CCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 998643 789999999999999999888899999543
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-16 Score=142.83 Aligned_cols=119 Identities=23% Similarity=0.392 Sum_probs=97.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCC---
Q 004208 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHP--- 438 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~--- 438 (768)
.|+|+|++|++|+.. +..|.+||||+++++++.++|+++.++.||.|||.|.|.+.++...|.|+|||++....
T Consensus 2 ~L~V~vi~a~~L~~~---d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAK---DKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCC---CCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence 589999999999985 66789999999999999999999999999999999999998777799999999985210
Q ss_pred ----CCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEE
Q 004208 439 ----GGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAV 486 (768)
Q Consensus 439 ----~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 486 (768)
..+.|++||.+.+++.++.... ..||+|.... ......|+|.|++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~~~--~~w~~L~~~~-~~~~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSGEM--DVWYNLEKRT-DKSAVSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccCCC--CeEEECccCC-CCCcEeEEEEEEC
Confidence 0136999999999999886443 6899997553 2233579888864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-16 Score=142.15 Aligned_cols=118 Identities=24% Similarity=0.331 Sum_probs=96.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEec-CeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYA-NKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGA 441 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g-~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~~ 441 (768)
|+|+|++|+||..+ +..+.+||||++.++ .+.+||++++++.||.|||.|.|.+.. .+.|.|+|||++.++ .+
T Consensus 2 l~v~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~--~~ 75 (123)
T cd08382 2 VRLTVLCADGLAKR---DLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFK--KK 75 (123)
T ss_pred eEEEEEEecCCCcc---CCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCC--CC
Confidence 78999999999885 667899999999996 678999999999999999999999965 679999999999864 22
Q ss_pred CCCceEEEEEeccccccCce-eeeeEeeeecCCC-CcccccEEEEEE
Q 004208 442 KDSRIGKVRIRLSTLETDRI-YTHSYPLVALLPN-GVKKMGEVQLAV 486 (768)
Q Consensus 442 ~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~-g~~~~G~i~l~~ 486 (768)
.|++||++.++++++..... ...||+|...... +....|+|.+.+
T Consensus 76 ~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 76 DQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 36899999999999876543 3579999665432 233357777665
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=150.99 Aligned_cols=117 Identities=24% Similarity=0.361 Sum_probs=96.2
Q ss_pred CCcccccccccc----------cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeEeeeecCCCCCeeeeE
Q 004208 25 RERLTSSFDLVE----------QMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIG-----NYKGTTIPFEKKLNPEWNQV 89 (768)
Q Consensus 25 ~~~~~~~~~~~~----------~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~Wne~ 89 (768)
...+++.|+... ..+.|.|+|++|+||+..+..|.+||||++++. .++++|++++++.||+|||+
T Consensus 3 ~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~ 82 (162)
T cd04020 3 ELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHT 82 (162)
T ss_pred eEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCE
Confidence 345666666532 468999999999999999988999999999984 25789999999999999999
Q ss_pred EEEEe---ccCCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEccc
Q 004208 90 FAFTK---ERLQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEA 146 (768)
Q Consensus 90 f~f~~---~~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 146 (768)
|.|.. .++....|.|+|||++.+ ++++||++.+++.++.... ....|+.+.+
T Consensus 83 f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~-----~~~~w~~~~~ 138 (162)
T cd04020 83 FVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYG-----QAVDWMDSTG 138 (162)
T ss_pred EEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCC-----CccccccCCh
Confidence 99984 344456899999999998 8999999999999987543 2467887754
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=141.88 Aligned_cols=101 Identities=21% Similarity=0.324 Sum_probs=86.4
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeC--CCcEEEEEEEeC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYD--PYTVITLVVFDN 433 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~--~~~~l~v~v~d~ 433 (768)
+.|.|+|++|+||+++ + .|.+||||++++.+ ...||++++++.||.|||.|.|.+.. ....|.|+|||.
T Consensus 12 ~~L~V~Vi~ar~L~~~---~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 12 RKLTLHVLEAKGLRST---N-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred CEEEEEEEEEECCCCC---C-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 4699999999999985 5 67899999999964 35799999999999999999999875 235799999999
Q ss_pred CCCCCCCCCCCceEEEEEeccccccCceeeeeEee
Q 004208 434 CHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468 (768)
Q Consensus 434 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 468 (768)
+..+ .++++||.+.|+|.++..+..+..||+|
T Consensus 88 ~~~~---~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 88 LSKS---RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCc---CCCEEEEEEEecHHHhccCccccceEeC
Confidence 8742 2478999999999999888778999976
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.3e-16 Score=142.85 Aligned_cols=118 Identities=22% Similarity=0.331 Sum_probs=99.2
Q ss_pred eeEEEEEEEEecCCCCCCCC-------CCCCCcCcEEEEEecCee-eeeccccCCCCCccccEEEEEEeCCCcEEEEEEE
Q 004208 360 IGVLELGILSAKELLPMKSR-------DGRGTTDAYCVAKYANKW-VRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVF 431 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~-------~~~g~~dpyv~v~~g~~~-~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~ 431 (768)
.|.|+|+|++|+||...+.. ...|.+||||++.++++. .+|++++++.||.|||+|.|.+. ....|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 47899999999999885320 013689999999998865 69999999999999999999997 4568999999
Q ss_pred eCCCCCCCCCCCCceEEEEEecccccc--CceeeeeEeeeecCCCCcccccEEEEEEEEEe
Q 004208 432 DNCHLHPGGAKDSRIGKVRIRLSTLET--DRIYTHSYPLVALLPNGVKKMGEVQLAVRFTC 490 (768)
Q Consensus 432 d~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 490 (768)
|++.++ +|++||++.++|+++.. +.....|++|. ..|+|++++++.+
T Consensus 82 d~~~~~----~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIG----PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred eCCCCC----CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 998755 78999999999999987 45668999994 3499999999864
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.4e-16 Score=141.85 Aligned_cols=122 Identities=22% Similarity=0.384 Sum_probs=101.2
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCee-eeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKW-VRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPG 439 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~-~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~ 439 (768)
-.|.|.|++|+||+++ .+|||.+.++++. .||+++.++.||.|+|.|.|....+...+.|.|++.+.....
T Consensus 11 ~sL~v~V~EAk~Lp~~--------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~ 82 (146)
T cd04013 11 NSLKLWIIEAKGLPPK--------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKK 82 (146)
T ss_pred EEEEEEEEEccCCCCc--------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccc
Confidence 3599999999999874 3799999999987 699999999999999999998777777899999876542101
Q ss_pred CCCCCceEEEEEeccccccCceeeeeEeeeecCCCC-------cccccEEEEEEEEEe
Q 004208 440 GAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNG-------VKKMGEVQLAVRFTC 490 (768)
Q Consensus 440 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-------~~~~G~i~l~~~~~~ 490 (768)
..++++||++.||+.++.++.....||||.....+. .+..++|+++++|..
T Consensus 83 ~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 83 KDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred ccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 126899999999999999998899999999876543 234579999999964
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.7e-16 Score=140.29 Aligned_cols=103 Identities=25% Similarity=0.353 Sum_probs=89.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEeccCC
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG---NVVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKLGD 274 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg---~~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d~~ 274 (768)
+.|.|+|++|+||+..+..+.+||||++.+. ++.++|+++++ +.||+|||+|.|.+... ....|.|+|||++..
T Consensus 16 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~ 94 (124)
T cd08385 16 NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRF 94 (124)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcC-CCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence 4699999999999999988999999999984 35779999987 99999999999998643 345799999999998
Q ss_pred CCCceeEEEEEeccccccccCCCCCCceeEEcc
Q 004208 275 NKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLE 307 (768)
Q Consensus 275 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 307 (768)
+++++||++.++++++.. +....+|++|.
T Consensus 95 ~~~~~lG~~~i~l~~~~~----~~~~~~W~~l~ 123 (124)
T cd08385 95 SKHDLIGEVRVPLLTVDL----GHVTEEWRDLE 123 (124)
T ss_pred CCCceeEEEEEecCcccC----CCCcceEEEcc
Confidence 899999999999999863 34578999885
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.3e-17 Score=147.23 Aligned_cols=100 Identities=26% Similarity=0.292 Sum_probs=87.5
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec--cC
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE--RL 97 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~--~~ 97 (768)
...+++.|+.. ...|.|+|++|+||+..|..|.+||||++++.+ .+.+|++++++.||+|||+|.|.+. ++
T Consensus 3 ~i~~sL~Y~~~--~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l 80 (136)
T cd08406 3 EILLSLSYLPT--AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVL 80 (136)
T ss_pred EEEEEEEEcCC--CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHh
Confidence 46788899854 468999999999999999899999999999953 2568999999999999999999975 46
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCC
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPD 126 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~ 126 (768)
....|.|+|||+|.. ++++||++.+....
T Consensus 81 ~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 81 QDLSLRVTVAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred CCcEEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence 678999999999988 99999999997653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.7e-16 Score=140.59 Aligned_cols=102 Identities=27% Similarity=0.420 Sum_probs=86.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEeeecccCCCCCCcccceEEEEecCC---CCCcEEEEEEec
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN-----VVLKTTVSAKKTVNPTWNEDLMFVAAEP---FDDPLILTVEDK 271 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~-----~~~~T~~i~~~t~nP~wne~f~f~~~~~---~~~~L~i~V~d~ 271 (768)
+.|.|+|++|++|+..+..+.+||||++++.+ ++.+|+++++ +.||.|||+|.|.+... ....|.|+|||+
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~ 94 (125)
T cd04031 16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKK-TLNPEWNQTFEYSNVRRETLKERTLEVTVWDY 94 (125)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCC-CCCCccccEEEEcccCHHHhCCCEEEEEEEeC
Confidence 46999999999999999889999999999953 5779999987 99999999999986432 356899999999
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceeEEcc
Q 004208 272 LGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLE 307 (768)
Q Consensus 272 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 307 (768)
+..+++++||++.++|++... ....+||+|+
T Consensus 95 ~~~~~~~~iG~~~i~l~~~~~-----~~~~~W~~L~ 125 (125)
T cd04031 95 DRDGENDFLGEVVIDLADALL-----DDEPHWYPLQ 125 (125)
T ss_pred CCCCCCcEeeEEEEecccccc-----cCCcceEECc
Confidence 988899999999999998331 2246899985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-16 Score=141.30 Aligned_cols=93 Identities=23% Similarity=0.255 Sum_probs=83.0
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEecc-CCCceEEEEEEEcCCC-CC
Q 004208 37 QMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKER-LQAISVELLVKDKMIV-NG 114 (768)
Q Consensus 37 ~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~-~~~~~L~i~V~d~~~~-~d 114 (768)
.++.|.|+|++|++|+. +..+.+||||+|++++++.+|++++++.||+|||+|.|.... .....|.|+|||++.. +|
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d 104 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD 104 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence 57899999999999974 667889999999999999999999999999999999997433 3468999999999998 99
Q ss_pred ceeEEEEEcCCCCCCC
Q 004208 115 DFIGKIKIDMPDIPKR 130 (768)
Q Consensus 115 ~~lG~~~i~l~~l~~~ 130 (768)
++||++.++|.....+
T Consensus 105 d~IG~~~i~l~~~~~~ 120 (127)
T cd04032 105 DLLGTCSVVPEAGVHE 120 (127)
T ss_pred CeeEEEEEEecCCcee
Confidence 9999999999977643
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.8e-16 Score=140.61 Aligned_cols=103 Identities=21% Similarity=0.348 Sum_probs=88.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEecc
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG-----NVVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKL 272 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg-----~~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d 272 (768)
+.|+|+|++|+||+..+..+.+||||++.+. ...++|+++++ +.||+|||+|.|.+... ....|.|.|||++
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~ 94 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD-NLNPVFDETFEFPVSLEELKRRTLDVAVKNSK 94 (127)
T ss_pred CEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccC-CCCCEECeEEEEecCHHHhcCCEEEEEEEECC
Confidence 4699999999999999988999999999994 46789999987 99999999999998543 4568999999988
Q ss_pred CC--CCCceeEEEEEeccccccccCCCCCCceeEEcc
Q 004208 273 GD--NKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLE 307 (768)
Q Consensus 273 ~~--~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 307 (768)
.. +++++||++.+++.++.. .....+||+|+
T Consensus 95 ~~~~~~~~~iG~~~i~l~~l~~----~~~~~~W~~L~ 127 (127)
T cd04030 95 SFLSREKKLLGQVLIDLSDLDL----SKGFTQWYDLT 127 (127)
T ss_pred cccCCCCceEEEEEEecccccc----cCCccceEECc
Confidence 75 689999999999999863 24578899874
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-16 Score=138.33 Aligned_cols=106 Identities=25% Similarity=0.302 Sum_probs=92.2
Q ss_pred CCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEeeecccCCCCCCcccceEEEEecCCC----CCcEEEEEEecc
Q 004208 197 PKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPF----DDPLILTVEDKL 272 (768)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~~~~T~~i~~~t~nP~wne~f~f~~~~~~----~~~L~i~V~d~d 272 (768)
|+.+.|+|+|++|++|+ .+.+||||++++++++.+|+++++ +.||.|||+|.|.+..+. +..|.|+|||++
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 45678999999999998 578999999999999999999887 999999999999976542 467999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEccc
Q 004208 273 GDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLER 308 (768)
Q Consensus 273 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~ 308 (768)
..+++++||++.++|+++... ..+....+|++|.+
T Consensus 76 ~~~~~~~iG~~~i~l~~v~~~-~~~~~~~~w~~L~~ 110 (111)
T cd04011 76 SLRSDTLIGSFKLDVGTVYDQ-PDHAFLRKWLLLTD 110 (111)
T ss_pred ccccCCccEEEEECCccccCC-CCCcceEEEEEeeC
Confidence 888899999999999999754 34567889999875
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.9e-16 Score=139.99 Aligned_cols=106 Identities=24% Similarity=0.261 Sum_probs=87.5
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEeeecccCCCCCCcccceEEEE-ecC--CCCCcEEEEEEecc
Q 004208 200 WYLRVNVIEAQDLVPKQRN-RNPEVFIKAIFG---NVVLKTTVSAKKTVNPTWNEDLMFV-AAE--PFDDPLILTVEDKL 272 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~-~~~dpyV~v~lg---~~~~~T~~i~~~t~nP~wne~f~f~-~~~--~~~~~L~i~V~d~d 272 (768)
..|+|+|++|+||+..+.. +.+||||++.+. +++.||+++++ +.||.|||+|.|. +.. .....|.++|||+|
T Consensus 16 ~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 16 KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 3699999999999998876 889999999994 45779999987 9999999999994 332 23457999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEccc
Q 004208 273 GDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLER 308 (768)
Q Consensus 273 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~ 308 (768)
..+++++||++.++|+++... .......|.+|++
T Consensus 95 ~~~~d~~lG~~~i~L~~l~~~--~~~~~~~~~~~~~ 128 (128)
T cd08388 95 RYSRDDVIGEVVCPLAGADLL--NEGELLVSREIQP 128 (128)
T ss_pred CCCCCceeEEEEEeccccCCC--CCceEEEEEeccC
Confidence 999999999999999998642 2344778888763
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.9e-16 Score=140.87 Aligned_cols=89 Identities=27% Similarity=0.294 Sum_probs=76.3
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEe
Q 004208 200 WYLRVNVIEAQDLVPKQR--NRNPEVFIKAIFGN-----VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVED 270 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~--~~~~dpyV~v~lg~-----~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d 270 (768)
+.|.|.|++|+||..+|. .+.+||||++++.. .+.||++.++ +.||+|||+|.|.+... .+..|.|+|||
T Consensus 15 ~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d 93 (138)
T cd08407 15 NRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELLAASSVELEVLN 93 (138)
T ss_pred CeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence 469999999999999883 35589999999943 2568888887 99999999999998654 35679999999
Q ss_pred ccCCCCCceeEEEEEeccc
Q 004208 271 KLGDNKEECLGRLVLPLSK 289 (768)
Q Consensus 271 ~d~~~~d~~lG~~~i~l~~ 289 (768)
+|..+++++||++.+++..
T Consensus 94 ~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 94 QDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred CCCCcCcceeceEEecCcC
Confidence 9999999999999999865
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=140.84 Aligned_cols=120 Identities=27% Similarity=0.424 Sum_probs=98.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEeeecccCCCCCCcccceEEEEecCC---------CCCcEEEEEEec
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEP---------FDDPLILTVEDK 271 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~~~~T~~i~~~t~nP~wne~f~f~~~~~---------~~~~L~i~V~d~ 271 (768)
+|+|.|++|++|+.+|..+.+||||++.++++..+|+++++ +.||.|||.|.|.+... ....+.|+|||+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 59999999999999999999999999999999999999987 99999999999975321 124689999999
Q ss_pred cCCCCCceeEEEEE-eccccccccCCCCCCceeEEcccCccCccccccccccceEEEEEec
Q 004208 272 LGDNKEECLGRLVL-PLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSL 331 (768)
Q Consensus 272 d~~~~d~~lG~~~i-~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~ 331 (768)
|..+++++||++.+ ++..+... ..+....+|++|...+ ...|+|++.+.+
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~-~~~~~~~~W~~L~~~~---------~~~Geil~~~~~ 131 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLE-EDFPPKLQWFPIYKGG---------QSAGELLAAFEL 131 (135)
T ss_pred cCCCCCccceEEEeeeeeecccC-CCCCCCceEEEeecCC---------CchhheeEEeEE
Confidence 99889999999987 44443321 2356788999998542 357889888764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-16 Score=143.86 Aligned_cols=108 Identities=28% Similarity=0.394 Sum_probs=90.5
Q ss_pred EEEEEEEeecCCCCCCC--------------CCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEecc-CCCceEEEE
Q 004208 41 LYVRIVRARDLQVNQVT--------------GTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKER-LQAISVELL 105 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~--------------g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~-~~~~~L~i~ 105 (768)
|.|+|++|++|+.+|.. +.+||||+|.+++++.+|++++++.||+|||+|.|.+.. .....|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 78999999999998854 379999999999999999999999999999999999643 235799999
Q ss_pred EEEcCCC-CCceeEEEEEcCCCCCCCCCCC--CCCCCeEEEcccCC
Q 004208 106 VKDKMIV-NGDFIGKIKIDMPDIPKRVPPD--SPLAPEWKRLEAKD 148 (768)
Q Consensus 106 V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~--~~~~~~w~~L~~~~ 148 (768)
|||+|.. +|++||++.+++.++....... -...+.|+.|....
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 9999998 9999999999999886543110 12457899987654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-16 Score=139.13 Aligned_cols=99 Identities=28% Similarity=0.418 Sum_probs=85.7
Q ss_pred eEEEEEEEEecCCCCCCCCCCC-CCcCcEEEEEec---CeeeeeccccCCCCCccccEEEEEEeCC----CcEEEEEEEe
Q 004208 361 GVLELGILSAKELLPMKSRDGR-GTTDAYCVAKYA---NKWVRTRTVVDSFDPKWNEQYTWEVYDP----YTVITLVVFD 432 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~-g~~dpyv~v~~g---~~~~~T~~~~~t~nP~wne~~~~~v~~~----~~~l~v~v~d 432 (768)
|.|+|+|++|+||+.+ +.. |.+||||++++. ...++|++++++.||.|||.|.|.+..+ ...|.++|||
T Consensus 1 G~L~V~v~~a~~L~~~---d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKA---DFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCcc---cCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence 6899999999999985 566 899999999984 3568999999999999999999988643 4689999999
Q ss_pred CCCCCCCCCCCCceEEEEEeccccccCceeeeeEeee
Q 004208 433 NCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLV 469 (768)
Q Consensus 433 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 469 (768)
++.++ +|++||++.++++++.+.. .|+++.
T Consensus 78 ~d~~~----~dd~lG~~~i~l~~l~~~~---~~~~~~ 107 (111)
T cd04041 78 SDRFT----ADDRLGRVEIDLKELIEDR---NWMGRR 107 (111)
T ss_pred CCCCC----CCCcceEEEEEHHHHhcCC---CCCccc
Confidence 99865 8999999999999998553 788774
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=138.44 Aligned_cols=104 Identities=26% Similarity=0.414 Sum_probs=89.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEeeecccCCCCCCcccceEEEEecC---CCCCcEEEEEEeccC
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIF---GNVVLKTTVSAKKTVNPTWNEDLMFVAAE---PFDDPLILTVEDKLG 273 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~l---g~~~~~T~~i~~~t~nP~wne~f~f~~~~---~~~~~L~i~V~d~d~ 273 (768)
+.|.|+|++|+||+..+..+.+||||++.+ +++..+|+++++ +.||.|||+|.|.+.. .....|.++|||++.
T Consensus 16 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~ 94 (125)
T cd08386 16 STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR 94 (125)
T ss_pred CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecC-CCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence 369999999999999998899999999999 356789999987 9999999999997432 234579999999999
Q ss_pred CCCCceeEEEEEeccccccccCCCCCCceeEEccc
Q 004208 274 DNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLER 308 (768)
Q Consensus 274 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~ 308 (768)
.+++++||++.++++++.. ......|++|++
T Consensus 95 ~~~~~~iG~~~i~l~~l~~----~~~~~~W~~l~~ 125 (125)
T cd08386 95 FSRNDPIGEVSLPLNKVDL----TEEQTFWKDLKP 125 (125)
T ss_pred CcCCcEeeEEEEecccccC----CCCcceEEecCC
Confidence 8899999999999999873 345789999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.8e-16 Score=140.13 Aligned_cols=104 Identities=20% Similarity=0.336 Sum_probs=88.9
Q ss_pred CeeeEEEEEEEEecCCCCCCCCC-CCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeCC---CcEEEE
Q 004208 358 PVIGVLELGILSAKELLPMKSRD-GRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYDP---YTVITL 428 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~-~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~~---~~~l~v 428 (768)
+..|.|.|+|++|+||+.+ + ..+.+||||++++.+ ...+|++++++.||.|||.|.|.+... ...|.|
T Consensus 11 ~~~~~L~V~v~~a~~L~~~---~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i 87 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYA---DEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQL 87 (123)
T ss_pred CCCCEEEEEEEEecCCCCc---CCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEE
Confidence 3456799999999999985 4 567899999998832 458999999999999999999998752 458999
Q ss_pred EEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEee
Q 004208 429 VVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468 (768)
Q Consensus 429 ~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 468 (768)
+|||++.++ ++++||++.++|+++..+...+.||+|
T Consensus 88 ~v~d~~~~~----~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 88 SVWHHDRFG----RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEEeCCCCc----CCceeeEEEEecccccccCCCccEEEC
Confidence 999999865 889999999999999777677899986
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=139.26 Aligned_cols=114 Identities=21% Similarity=0.383 Sum_probs=98.5
Q ss_pred EEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCC---CcEEEEEEEeCCCCCCCCCCC
Q 004208 367 ILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDP---YTVITLVVFDNCHLHPGGAKD 443 (768)
Q Consensus 367 v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~---~~~l~v~v~d~~~~~~~~~~d 443 (768)
|++|+||+. ..|++||||++++++..++|++++++.||+|||.|.|.+.++ ...|.|+|||++..+ +|
T Consensus 2 vi~a~~L~~-----~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~----~d 72 (127)
T cd08373 2 VVSLKNLPG-----LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG----RN 72 (127)
T ss_pred eEEeeCCcc-----cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC----CC
Confidence 689999976 457899999999999999999999999999999999999754 569999999999865 78
Q ss_pred CceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEEec
Q 004208 444 SRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFTCS 491 (768)
Q Consensus 444 ~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 491 (768)
++||++.++|+++..+.....|++|.... +....|+|+++++|.+.
T Consensus 73 ~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 73 RLIGSATVSLQDLVSEGLLEVTEPLLDSN--GRPTGATISLEVSYQPP 118 (127)
T ss_pred ceEEEEEEEhhHcccCCceEEEEeCcCCC--CCcccEEEEEEEEEeCC
Confidence 99999999999999888888999997553 33335899999998643
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.2e-16 Score=144.42 Aligned_cols=100 Identities=29% Similarity=0.465 Sum_probs=88.6
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----------------------------eeEeeeecCCCCCee
Q 004208 36 EQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-----------------------------KGTTIPFEKKLNPEW 86 (768)
Q Consensus 36 ~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~-----------------------------~~~T~~~~~t~nP~W 86 (768)
.+.+.|.|+|++|+||.+.|..|.+||||++++++. .++|+++++|.||+|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 467899999999999999999999999999999641 368999999999999
Q ss_pred eeEEEEEeccCCCceEEEEEEEcCCCCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEc
Q 004208 87 NQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRL 144 (768)
Q Consensus 87 ne~f~f~~~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 144 (768)
||+|.|.+.++....|.|+|||++ +++||++.+++.++... ....||+|
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~------~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSC------GLDSWFKL 153 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCCC------CCCCeEeC
Confidence 999999998776789999999998 89999999999999732 25899986
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-16 Score=145.42 Aligned_cols=114 Identities=25% Similarity=0.375 Sum_probs=94.9
Q ss_pred cccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEecc--CCC
Q 004208 27 RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKER--LQA 99 (768)
Q Consensus 27 ~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~--~~~ 99 (768)
.+++.|+- ..+.|.|+|++|+||+..|..|.+||||++.+.+ .+.+|++++++.||+|||+|.|.+.. +..
T Consensus 3 ~~~l~y~~--~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~ 80 (133)
T cd08384 3 LVSLMYNT--QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK 80 (133)
T ss_pred EEEEEEcC--CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence 46777885 4689999999999999999889999999999964 36799999999999999999999753 345
Q ss_pred ceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 100 ISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 100 ~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
..|.|+|||++.. ++++||++.+++.... ....+|+++...++
T Consensus 81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~-------~~~~~W~~~l~~~~ 124 (133)
T cd08384 81 KTLEITVWDKDIGKSNDYIGGLQLGINAKG-------ERLRHWLDCLKNPD 124 (133)
T ss_pred CEEEEEEEeCCCCCCccEEEEEEEecCCCC-------chHHHHHHHHhCCC
Confidence 7899999999988 8999999999997521 12467888765443
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.5e-16 Score=138.68 Aligned_cols=106 Identities=21% Similarity=0.347 Sum_probs=89.6
Q ss_pred CCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEE---C---CeEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEE
Q 004208 197 PKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIF---G---NVVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTV 268 (768)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~l---g---~~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V 268 (768)
+..+.|.|+|++|+||+.++..+.+||||++++ . ..+.+|++.++ +.||+|||+|.|.+... ....|.|+|
T Consensus 11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L~~~~L~~~V 89 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKLYQKTLQVDV 89 (124)
T ss_pred CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHhhcCEEEEEE
Confidence 344579999999999999988889999999998 2 24789998887 99999999999998644 456899999
Q ss_pred EeccCCCCCceeEEEEEeccccccccCCCCCCceeEEc
Q 004208 269 EDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNL 306 (768)
Q Consensus 269 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L 306 (768)
||++..+++++||++.|+|+++.. ......+||+|
T Consensus 90 ~~~~~~~~~~~lG~~~i~L~~~~~---~~~~~~~Wy~l 124 (124)
T cd08680 90 CSVGPDQQEECLGGAQISLADFES---SEEMSTKWYNL 124 (124)
T ss_pred EeCCCCCceeEEEEEEEEhhhccC---CCccccccccC
Confidence 999988899999999999999853 22346789875
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.7e-16 Score=142.54 Aligned_cols=91 Identities=32% Similarity=0.522 Sum_probs=85.0
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCce
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDF 116 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~ 116 (768)
.|.|+|+|++|+||+..|. +.+||||++++++++.+|++++++.||+|||+|.|.+.+. ...|.|+|||++.+ +|++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd~ 78 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDS 78 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCCE
Confidence 3789999999999998887 8999999999999999999999999999999999999877 78899999999988 8999
Q ss_pred eEEEEEcCCCCCCC
Q 004208 117 IGKIKIDMPDIPKR 130 (768)
Q Consensus 117 lG~~~i~l~~l~~~ 130 (768)
||++.+++.++...
T Consensus 79 iG~a~i~l~~l~~~ 92 (145)
T cd04038 79 MGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEHHHhhhh
Confidence 99999999998754
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=139.86 Aligned_cols=103 Identities=24% Similarity=0.357 Sum_probs=83.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C--eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEecc
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG---N--VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKL 272 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg---~--~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d 272 (768)
..|.|+|++|+||+..+..+.+||||++++. . .+.+|+++++ +.||+|||+|.|.+... .+..|.|+|||+|
T Consensus 15 ~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 15 ERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD-DTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccC-CCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 3699999999999999988999999999992 2 2568888887 99999999999998643 4568999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 273 GDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 273 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
..+++++||++.++..... ....+|..+...
T Consensus 94 ~~~~~~~iG~v~lg~~~~g------~~~~hW~~ml~~ 124 (136)
T cd08406 94 EDGKTPNVGHVIIGPAASG------MGLSHWNQMLAS 124 (136)
T ss_pred CCCCCCeeEEEEECCCCCC------hhHHHHHHHHHC
Confidence 9999999999999875422 224556555443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=143.35 Aligned_cols=131 Identities=27% Similarity=0.341 Sum_probs=104.1
Q ss_pred ceEEEEEEEEcccCCccccccccccccccccccccccccceeecCCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEE---
Q 004208 153 RGELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIF--- 229 (768)
Q Consensus 153 ~G~i~l~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~l--- 229 (768)
+|+|.+++.|.++.++.... ...+..+.|.|+|++|+||+..+..+.+||||++++
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~---------------------~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~ 59 (162)
T cd04020 1 RGELKVALKYVPPESEGALK---------------------SKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPD 59 (162)
T ss_pred CceEEEEEEecCcccccccc---------------------ccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcC
Confidence 49999999998765432110 012245689999999999999998899999999988
Q ss_pred --CCeEEeeecccCCCCCCcccceEEEEecCC---CCCcEEEEEEeccCCCCCceeEEEEEeccccccccCCCCCCceeE
Q 004208 230 --GNVVLKTTVSAKKTVNPTWNEDLMFVAAEP---FDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWY 304 (768)
Q Consensus 230 --g~~~~~T~~i~~~t~nP~wne~f~f~~~~~---~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~ 304 (768)
+.++++|+++++ +.||.|||+|.|.+... .+..|.|+|||++..+++++||++.++++++... .....|+
T Consensus 60 ~~~~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~----~~~~~w~ 134 (162)
T cd04020 60 KSKKSKQKTPVVKK-SVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSY----GQAVDWM 134 (162)
T ss_pred CCCCcceeCCccCC-CCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccC----CCccccc
Confidence 346789999987 99999999999985322 3457999999999988899999999999998632 3467888
Q ss_pred EcccC
Q 004208 305 NLERN 309 (768)
Q Consensus 305 ~L~~~ 309 (768)
.+.+.
T Consensus 135 ~~~~~ 139 (162)
T cd04020 135 DSTGE 139 (162)
T ss_pred cCChH
Confidence 87653
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.2e-16 Score=141.57 Aligned_cols=100 Identities=26% Similarity=0.318 Sum_probs=86.2
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec--
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQV--TGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE-- 95 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~--~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~-- 95 (768)
...+++.|... .+.|.|+|++|+||...|. .+.+||||+|++.+ .+.||++++++.||+|||+|.|.+.
T Consensus 3 el~~sL~Y~~~--~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~ 80 (138)
T cd08407 3 EVLLSISYLPA--ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE 80 (138)
T ss_pred EEEEEEEEeCC--CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence 45688888853 5789999999999999883 35599999999875 2568999999999999999999985
Q ss_pred cCCCceEEEEEEEcCCC-CCceeEEEEEcCCC
Q 004208 96 RLQAISVELLVKDKMIV-NGDFIGKIKIDMPD 126 (768)
Q Consensus 96 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~ 126 (768)
++....|.|+|||+|.+ ++++||++.+.+..
T Consensus 81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred HhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 45578899999999998 99999999999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=136.78 Aligned_cols=95 Identities=19% Similarity=0.307 Sum_probs=84.2
Q ss_pred CCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeC--CCcEEEEEEEeCC
Q 004208 357 PPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYD--PYTVITLVVFDNC 434 (768)
Q Consensus 357 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~--~~~~l~v~v~d~~ 434 (768)
...+|.|+|+|++|+||+. +..|.+||||+|+++++.+||++++++.||+|||+|.|.... ....|.|+|||++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~----d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG----DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred cCCcEEEEEEEEECCCCCc----CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 4678899999999999974 567889999999999999999999999999999999998644 3669999999999
Q ss_pred CCCCCCCCCCceEEEEEeccccccC
Q 004208 435 HLHPGGAKDSRIGKVRIRLSTLETD 459 (768)
Q Consensus 435 ~~~~~~~~d~~lG~~~i~l~~l~~~ 459 (768)
.++ +|++||++.++|.....+
T Consensus 100 ~~s----~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 100 NGW----DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCC----CCCeeEEEEEEecCCcee
Confidence 865 899999999999977654
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.64 E-value=4e-15 Score=138.06 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=95.5
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE--C---CeeeEeeeecCCCCCeeeeEEEEEeccC--------CCceEEEE
Q 004208 41 LYVRIVRARD--LQVNQVTGTCDPYVEVKI--G---NYKGTTIPFEKKLNPEWNQVFAFTKERL--------QAISVELL 105 (768)
Q Consensus 41 L~V~i~~a~~--L~~~d~~g~~dPyv~v~~--~---~~~~~T~~~~~t~nP~Wne~f~f~~~~~--------~~~~L~i~ 105 (768)
..++|..|++ |+..+..+.+||||++++ . .++.||+++++|+||+|||+|.|.+... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4566666666 677777889999999997 2 3689999999999999999999998543 35679999
Q ss_pred EEEcCCC--CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEccc
Q 004208 106 VKDKMIV--NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQ 165 (768)
Q Consensus 106 V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~~ 165 (768)
|||++.+ +|++||++.++|..+.... ....|++|.+.. ...-|.|.+.+.....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~-----~~~~~~~L~~~~-k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKC-----EIHESVDLMDGR-KATGGKLEVKVRLREP 139 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccC-----cceEEEEhhhCC-CCcCCEEEEEEEecCC
Confidence 9999986 7999999999999997653 246799988532 2356999999987643
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=138.91 Aligned_cols=112 Identities=25% Similarity=0.292 Sum_probs=95.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-eeeeecccc-CCCCCccccEEEEEEeCC-----CcEEEEEEEeCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-KWVRTRTVV-DSFDPKWNEQYTWEVYDP-----YTVITLVVFDNCH 435 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-~~~~T~~~~-~t~nP~wne~~~~~v~~~-----~~~l~v~v~d~~~ 435 (768)
|+|+|++|+||+.. +..+++||||++++++ +..+|+++. ++.||.|||.|.|.+.++ ...|.|+|||++.
T Consensus 2 L~V~V~sA~~L~~~---~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 2 LEITIISAEDLKNV---NLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred EEEEEEEcccCCCC---CcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 88999999999985 5678999999999988 889999985 589999999999999876 5799999999987
Q ss_pred CCCCCCCCCceEEEEEeccccccCce-----eeeeEeeeecCCCCcccccEEEE
Q 004208 436 LHPGGAKDSRIGKVRIRLSTLETDRI-----YTHSYPLVALLPNGVKKMGEVQL 484 (768)
Q Consensus 436 ~~~~~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~i~l 484 (768)
++ +|++||++.++|.++..+.. ...||+|.... ++..|.|++
T Consensus 79 ~~----~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~---g~~~G~~~~ 125 (125)
T cd04051 79 SL----GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS---GKPQGVLNF 125 (125)
T ss_pred CC----CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC---CCcCeEEeC
Confidence 55 79999999999999987643 46899998643 345588874
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-15 Score=136.63 Aligned_cols=118 Identities=25% Similarity=0.314 Sum_probs=96.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCcee
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFI 117 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~l 117 (768)
.|.|+|.+|+ |...+..+.+||||+++++++ ..+|++++++.||+|||+|.|.+.. ...|.|+|||++.. .+++|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcEE
Confidence 6999999998 555555788999999999987 8999999999999999999999864 57899999999998 99999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccCC--CCccceEEEEEE
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD--GSRARGELMFAI 160 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~G~i~l~i 160 (768)
|++.++|.++.............|+++..+. +....|+|.+.+
T Consensus 80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 80 GEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999998765322222223588887655 234679988764
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=140.08 Aligned_cols=115 Identities=17% Similarity=0.306 Sum_probs=94.7
Q ss_pred CcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeEeeeecCCCCCeeeeEEEEEec--cC
Q 004208 26 ERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN------YKGTTIPFEKKLNPEWNQVFAFTKE--RL 97 (768)
Q Consensus 26 ~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~Wne~f~f~~~--~~ 97 (768)
..+++.|+- ..+.|.|+|++|+||+..+..|.+||||++.+.+ .+++|++++++.||+|||+|.|.+. ++
T Consensus 4 i~~sL~Y~~--~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l 81 (138)
T cd08408 4 LLLGLEYNA--LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL 81 (138)
T ss_pred EEEEeEEcC--CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence 467888985 4579999999999999999899999999999953 2568999999999999999999975 45
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 148 (768)
....|.|.|||.+.+ ++++||++.+++...-.. ...+|..+....
T Consensus 82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~------~~~hW~~~l~~~ 127 (138)
T cd08408 82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEE------EEEHWNEMKESK 127 (138)
T ss_pred CccEEEEEEEECCCCCCCcEEEEEEECCcCCCch------HHHHHHHHHhCC
Confidence 677999999999988 999999999988754321 124677765543
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-15 Score=135.58 Aligned_cols=118 Identities=23% Similarity=0.325 Sum_probs=99.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCCCCC
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN---VVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKE 277 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~---~~~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d 277 (768)
.++|+|++|++|+..+..+.+||||++.+++ +..+|+++++ +.||.|||+|.|.+.......|.|+|||++..+++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 5899999999999999889999999999853 4679999887 99999999999999876667899999999988889
Q ss_pred ceeEEEEEeccccccccCCCCCCceeEEcccCccCccccccccccceEEEEEecCC
Q 004208 278 ECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSLDG 333 (768)
Q Consensus 278 ~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~~~ 333 (768)
++||++.++|.++... ..+.....|++|.+. |++++++++++
T Consensus 81 ~~iG~~~i~l~~~~~~-~~~~~~~~w~~l~~~-------------g~i~l~~~~~~ 122 (126)
T cd04043 81 DLCGRASLKLDPKRFG-DDGLPREIWLDLDTQ-------------GRLLLRVSMEG 122 (126)
T ss_pred ceEEEEEEecCHHHcC-CCCCCceEEEEcCCC-------------CeEEEEEEEee
Confidence 9999999999876432 113456789999763 78999888754
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-16 Score=143.59 Aligned_cols=116 Identities=29% Similarity=0.394 Sum_probs=96.4
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEecc--C
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKER--L 97 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~--~ 97 (768)
...+++.|+. ..+.|.|+|++|+||+..|..|.+||||++++.+ .+.+|++++++.||+|||+|.|.+.. .
T Consensus 3 ~l~~~l~y~~--~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~ 80 (136)
T cd08404 3 ELLLSLCYQP--TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL 80 (136)
T ss_pred eEEEEEEEeC--CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHh
Confidence 4578888875 3578999999999999999899999999999853 25689999999999999999999753 3
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
....|.|+|||++.+ ++++||++.+++... + ....+|+.|....+
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~--~-----~~~~~w~~l~~~~~ 126 (136)
T cd08404 81 EDISVEFLVLDSDRVTKNEVIGRLVLGPKAS--G-----SGGHHWKEVCNPPR 126 (136)
T ss_pred CCCEEEEEEEECCCCCCCccEEEEEECCcCC--C-----chHHHHHHHHhCCC
Confidence 456899999999998 899999999999882 2 12578988876543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-15 Score=135.88 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=87.7
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEec---CeeeeeccccCCCCCccccEEEEE-EeC---CCcEEEEEEE
Q 004208 359 VIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYA---NKWVRTRTVVDSFDPKWNEQYTWE-VYD---PYTVITLVVF 431 (768)
Q Consensus 359 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g---~~~~~T~~~~~t~nP~wne~~~~~-v~~---~~~~l~v~v~ 431 (768)
..+.|.|+|++|+||++. +..|.+||||++.+. .+..||+++++ .||+|||+|.|+ +.. ....|.++||
T Consensus 14 ~~~~L~V~Vi~a~nL~~~---~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 14 SARKLTVTVIRAQDIPTK---DRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred CCCEEEEEEEEecCCCch---hcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 345699999999999985 567889999997772 35689999887 999999999998 543 3458999999
Q ss_pred eCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeee
Q 004208 432 DNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLV 469 (768)
Q Consensus 432 d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 469 (768)
|++.++ ++++||.+.|+|+++..+.....||+|.
T Consensus 90 ~~~~~~----~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 90 GVERMR----KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred ECCCcc----cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 999865 8999999999999998888888999984
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=139.87 Aligned_cols=103 Identities=24% Similarity=0.480 Sum_probs=90.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeeeEeeeecCCCCCeeeeEEEEEeccC---------------CCce
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIG----NYKGTTIPFEKKLNPEWNQVFAFTKERL---------------QAIS 101 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~----~~~~~T~~~~~t~nP~Wne~f~f~~~~~---------------~~~~ 101 (768)
|.|+|++|++|+.. ..|.+||||+++++ +++.+|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78899999999998 6788999999999999999999997654 4678
Q ss_pred EEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 102 VELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 102 L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
|.|+|||.+.. ++++||++.+++.++.... ....|++|.+...
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~-----~~~~W~~L~~~~~ 123 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAG-----SHQAWYFLQPREA 123 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCC-----cccceEecCCcCC
Confidence 99999999998 9999999999999987542 2589999998753
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.63 E-value=6e-16 Score=142.72 Aligned_cols=117 Identities=22% Similarity=0.370 Sum_probs=93.7
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec--cC
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE--RL 97 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~--~~ 97 (768)
...+++.|... .+.|.|+|++|++|+..|..|.+||||++.+.+ .+.+|+++++|.||+|||+|.|.+. ++
T Consensus 2 ~i~~~l~y~~~--~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l 79 (135)
T cd08410 2 ELLLSLNYLPS--AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEEL 79 (135)
T ss_pred cEEEEEEECCC--CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHh
Confidence 45688888853 589999999999999999889999999999732 3578999999999999999999974 34
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
....|.|+|||++.. ++++||++.|........ ...+|..|....+
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~------~~~~W~~l~~~~~ 126 (135)
T cd08410 80 ENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPS------ETNHWRRMLNSQR 126 (135)
T ss_pred CCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCch------HHHHHHHHHhCCC
Confidence 455799999999988 999999998765333221 1367877766544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-15 Score=134.19 Aligned_cols=93 Identities=15% Similarity=0.272 Sum_probs=76.5
Q ss_pred CCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CC--eEEeeecccCCCC-CCcccceEEEEecCCC-CCcEEEEEE
Q 004208 197 PKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIF---GN--VVLKTTVSAKKTV-NPTWNEDLMFVAAEPF-DDPLILTVE 269 (768)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~l---g~--~~~~T~~i~~~t~-nP~wne~f~f~~~~~~-~~~L~i~V~ 269 (768)
|..++|+|.|++|+||+.++..+.+||||+|.+ ++ .+.||+++++ ++ ||+|||+|.|.+.... +-.|.|+||
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~ 89 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQEHGIQFLIKLY 89 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCchhheeEEEEEEE
Confidence 344679999999999998876777899999998 22 4678888887 74 6999999999987643 336888899
Q ss_pred eccCCCCCceeEEEEEecccc
Q 004208 270 DKLGDNKEECLGRLVLPLSKA 290 (768)
Q Consensus 270 d~d~~~~d~~lG~~~i~l~~l 290 (768)
|++..+++++||++.++.+..
T Consensus 90 d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 90 SRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eCCCCcCCceEEEEEECCccC
Confidence 999888999999999999763
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.6e-16 Score=143.05 Aligned_cols=116 Identities=25% Similarity=0.360 Sum_probs=95.0
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec--c
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE--R 96 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~--~ 96 (768)
|...+++.|+- ..+.|.|+|++|++|+..|..|.+||||+|++++ .+.+|++++++.||+|||+|.|.+. +
T Consensus 2 G~l~~~l~y~~--~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 79 (136)
T cd08402 2 GDICFSLRYVP--TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQ 79 (136)
T ss_pred cEEEEEeEEcC--CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHH
Confidence 34567888885 4689999999999999999899999999999953 3568999999999999999999975 3
Q ss_pred CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC
Q 004208 97 LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148 (768)
Q Consensus 97 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 148 (768)
+....|.|+|||++.+ +|++||++.+++..... ....|+++...+
T Consensus 80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~-------~~~~W~~~~~~~ 125 (136)
T cd08402 80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGA-------ELRHWSDMLASP 125 (136)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEECCccCCh-------HHHHHHHHHhCC
Confidence 3345899999999988 89999999999975421 146777776543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.9e-16 Score=142.92 Aligned_cols=116 Identities=30% Similarity=0.465 Sum_probs=95.1
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeEeeeecCCCCCeeeeEEEEEec--c
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIG--N---YKGTTIPFEKKLNPEWNQVFAFTKE--R 96 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~Wne~f~f~~~--~ 96 (768)
|...+++.|+-. .+.|.|+|++|+||...+..|.+||||++++. + .+.+|++++++.||+|||+|.|.+. +
T Consensus 2 G~l~~sl~y~~~--~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~ 79 (136)
T cd08405 2 GELLLSLCYNPT--ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLER 79 (136)
T ss_pred cEEEEEEEEcCC--CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHH
Confidence 456788899853 57899999999999998889999999999983 2 3578999999999999999999864 3
Q ss_pred CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC
Q 004208 97 LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148 (768)
Q Consensus 97 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 148 (768)
+....|.|+|||++.. ++++||++.+++.+... ....|+++...+
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~-------~~~~w~~~~~~~ 125 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGL-------ELKHWKDMLSKP 125 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccCCc-------hHHHHHHHHhCC
Confidence 4456899999999988 89999999999987621 135666665543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-15 Score=134.71 Aligned_cols=104 Identities=26% Similarity=0.380 Sum_probs=91.9
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCce
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDF 116 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~ 116 (768)
|.|+|+|++|++|+..+..+.+||||++++++ .+.+|++++++.||+|||+|.|.+... ...|.|+|||++.. +|++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence 57999999999999998889999999999987 568999999999999999999998765 57899999999998 8999
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 117 IGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 117 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
||++.+++.++.... ...||.|.+...
T Consensus 80 IG~~~~~l~~l~~~~------~~~~~~~~~~~~ 106 (120)
T cd04045 80 LGSVEINVSDLIKKN------EDGKYVEYDDEE 106 (120)
T ss_pred eeEEEEeHHHhhCCC------CCceEEecCCCc
Confidence 999999999997652 367888877653
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-15 Score=135.14 Aligned_cols=105 Identities=16% Similarity=0.225 Sum_probs=90.1
Q ss_pred CeeeEEEEEEEEecCCCCCCCCC-CCCCcCcEEEEEec---CeeeeeccccCCCCCccccEEEEEEeCC---CcEEEEEE
Q 004208 358 PVIGVLELGILSAKELLPMKSRD-GRGTTDAYCVAKYA---NKWVRTRTVVDSFDPKWNEQYTWEVYDP---YTVITLVV 430 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~-~~g~~dpyv~v~~g---~~~~~T~~~~~t~nP~wne~~~~~v~~~---~~~l~v~v 430 (768)
+..+.|.|.|++|+||+.+ + ..+.+||||++++. .+..+|++++++.||.|||.|.|.+... ...|.|+|
T Consensus 11 ~~~~~L~V~v~~a~~L~~~---~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v 87 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPR---TKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSV 87 (123)
T ss_pred CCCCEEEEEEEEecCCCCc---cCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEE
Confidence 3455799999999999985 4 56789999999983 3568999999999999999999998752 35899999
Q ss_pred EeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeee
Q 004208 431 FDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLV 469 (768)
Q Consensus 431 ~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 469 (768)
||.+..+ ++++||++.++|+++........|++|.
T Consensus 88 ~d~~~~~----~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 88 YDVDRFS----RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred EECCcCC----CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 9998754 7899999999999999888778999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=140.48 Aligned_cols=104 Identities=25% Similarity=0.340 Sum_probs=89.5
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeEeeeecCCCCCeeeeEEEEEeccC
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-------YKGTTIPFEKKLNPEWNQVFAFTKERL 97 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~~t~nP~Wne~f~f~~~~~ 97 (768)
...+++.|+- ....|.|+|++|++|+..+..|.+||||+|++.+ .+++|+++++|.||+|||+|.|.+...
T Consensus 4 ~l~~~l~y~~--~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 81 (133)
T cd04009 4 VLTVKAYYRA--SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPE 81 (133)
T ss_pred EEEEEEEEcC--CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechh
Confidence 3456667764 4678999999999999988889999999999963 468999999999999999999997642
Q ss_pred ----CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCC
Q 004208 98 ----QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKR 130 (768)
Q Consensus 98 ----~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~ 130 (768)
....|.|+|||++.. ++++||++.++|.++..-
T Consensus 82 ~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 82 QCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred hcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 356899999999998 799999999999998743
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-15 Score=139.47 Aligned_cols=91 Identities=31% Similarity=0.550 Sum_probs=84.0
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCC
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPG 439 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~ 439 (768)
+|.|+|+|++|+||+.. +. +.+||||++++|++.++|++++++.||.|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~---d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~-- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVR---DF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS-- 74 (145)
T ss_pred CeEEEEEEEeeECCCCC---CC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC--
Confidence 48899999999999874 44 7899999999999999999999999999999999999999889999999999876
Q ss_pred CCCCCceEEEEEecccccc
Q 004208 440 GAKDSRIGKVRIRLSTLET 458 (768)
Q Consensus 440 ~~~d~~lG~~~i~l~~l~~ 458 (768)
+|++||.+.+++.++..
T Consensus 75 --~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 75 --KDDSMGEAEIDLEPLVE 91 (145)
T ss_pred --CCCEEEEEEEEHHHhhh
Confidence 89999999999998764
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-15 Score=137.05 Aligned_cols=90 Identities=29% Similarity=0.465 Sum_probs=81.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCce
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYK--GTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDF 116 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~--~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~ 116 (768)
.|+|+|++|++|+..|..|.+||||++++++++ .+|++++++.||+|||+|.|.+.......|.|+|||++.. +|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 379999999999999999999999999999864 5788889999999999999998766678999999999998 9999
Q ss_pred eEEEEEcCCCCCC
Q 004208 117 IGKIKIDMPDIPK 129 (768)
Q Consensus 117 lG~~~i~l~~l~~ 129 (768)
||++.+++.+...
T Consensus 81 iG~~~i~l~~~~~ 93 (124)
T cd04037 81 IGETVIDLEDRFF 93 (124)
T ss_pred eEEEEEeeccccc
Confidence 9999999998764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-15 Score=136.46 Aligned_cols=104 Identities=28% Similarity=0.388 Sum_probs=91.9
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecC-CCCCeeeeEEEEEeccC---CCceEEEEEEEcCCC-C
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEK-KLNPEWNQVFAFTKERL---QAISVELLVKDKMIV-N 113 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~Wne~f~f~~~~~---~~~~L~i~V~d~~~~-~ 113 (768)
|.|.|+|++|++|+..+..+.+||||+++++++..+|+++.+ +.||+|||+|.|.+... ....|.|+|||.+.. +
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 579999999999999888899999999999998889988874 89999999999998765 357899999999988 8
Q ss_pred CceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccC
Q 004208 114 GDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAK 147 (768)
Q Consensus 114 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 147 (768)
+++||++.+++.++..+. ....|++|.+.
T Consensus 81 d~~iG~~~i~l~~l~~~~-----~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEG-----VEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCC-----CCcCceEeecc
Confidence 999999999999997653 24789998875
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-15 Score=134.99 Aligned_cols=103 Identities=31% Similarity=0.395 Sum_probs=91.6
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-eeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-KWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPG 439 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~ 439 (768)
|.|+|+|++|+||+.. +..|.+||||++.+++ ...+|+++.++.||.|||.|.|.+.++.+.|.|+|||++.++
T Consensus 1 g~L~V~Vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~-- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNL---EGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG-- 75 (120)
T ss_pred CeEEEEEEeeECCCCc---cCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC--
Confidence 6799999999999985 5678999999999976 569999999999999999999999888789999999999865
Q ss_pred CCCCCceEEEEEeccccccCceeeeeEeeeec
Q 004208 440 GAKDSRIGKVRIRLSTLETDRIYTHSYPLVAL 471 (768)
Q Consensus 440 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 471 (768)
+|++||++.+++.++..+ ..+.||-|.+.
T Consensus 76 --~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 76 --KDRSLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred --CCCeeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 889999999999999887 44788888754
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-15 Score=136.39 Aligned_cols=103 Identities=27% Similarity=0.429 Sum_probs=91.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccC-CCCCccccEEEEEEeCC----CcEEEEEEEeCCC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVD-SFDPKWNEQYTWEVYDP----YTVITLVVFDNCH 435 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~-t~nP~wne~~~~~v~~~----~~~l~v~v~d~~~ 435 (768)
|.|+|+|++|+||+.. +..+.+||||+++++++.++|+++.+ +.||.|||.|.|.+.++ ...|.|+|||.+.
T Consensus 1 g~L~V~V~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDT---DFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCC---CCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 6799999999999885 56689999999999999999999875 89999999999999886 4689999999998
Q ss_pred CCCCCCCCCceEEEEEeccccccCceeeeeEeeee
Q 004208 436 LHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVA 470 (768)
Q Consensus 436 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 470 (768)
++ +|++||.+.+++.++..+.....||+|..
T Consensus 78 ~~----~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FS----DDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CC----CCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 65 78999999999999988776788998864
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.5e-15 Score=134.05 Aligned_cols=112 Identities=22% Similarity=0.330 Sum_probs=95.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCceeE
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGN-YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFIG 118 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~lG 118 (768)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.||.|||+|.|.+.+.....+.|+|||++.. ++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999988888999999999987 457999999999999999999998765578999999999988 899999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEE
Q 004208 119 KIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMF 158 (768)
Q Consensus 119 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l 158 (768)
++.+++.++..+. ....|++|.+.. +...|.+.+
T Consensus 81 ~~~~~l~~l~~~~-----~~~~~~~L~~~g-~~~~~~~~~ 114 (115)
T cd04040 81 SAYIDLSDLEPEE-----TTELTLPLDGQG-GGKLGAVFL 114 (115)
T ss_pred EEEEEHHHcCCCC-----cEEEEEECcCCC-CccCceEEc
Confidence 9999999987652 257899998753 335676643
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-15 Score=138.37 Aligned_cols=115 Identities=27% Similarity=0.403 Sum_probs=98.8
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccC-C
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERL-Q 98 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~-~ 98 (768)
...++..|+. +.|.|+|++|++|+..+..+.+||||+|.+.+ .+++|++++++.||.|||+|.|.+... .
T Consensus 3 ~~~~~~~~~~----~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~ 78 (131)
T cd04026 3 RIYLKISVKD----NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADK 78 (131)
T ss_pred EEEEEEEECC----CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhc
Confidence 4567777774 78999999999999988888999999999974 578999999999999999999997643 3
Q ss_pred CceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 99 AISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 99 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
...|.|+|||++.. ++++||++.+++.++... ....||+|.+...
T Consensus 79 ~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~------~~~~w~~L~~~~~ 124 (131)
T cd04026 79 DRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM------PVDGWYKLLNQEE 124 (131)
T ss_pred CCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC------ccCceEECcCccc
Confidence 56899999999987 899999999999999754 2578999987653
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-15 Score=138.08 Aligned_cols=115 Identities=19% Similarity=0.306 Sum_probs=93.1
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec--c
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE--R 96 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~--~ 96 (768)
|...+++.|+-. .+.|.|+|++|+||+..+ .+.+||||++.+.+ .+.+|++++++.||+|||+|.|.+. +
T Consensus 2 G~i~~sl~y~~~--~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~ 78 (137)
T cd08409 2 GDIQISLTYNPT--LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQ 78 (137)
T ss_pred cEEEEEEEECCC--CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHH
Confidence 346788889853 578999999999999888 88899999999864 3668999999999999999999984 4
Q ss_pred CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEccc
Q 004208 97 LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEA 146 (768)
Q Consensus 97 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 146 (768)
+....|.|+|||.+.. ++++||++.+.......+. ....|..+..
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~-----~~~hW~~~~~ 124 (137)
T cd08409 79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGK-----ELEHWNDMLS 124 (137)
T ss_pred hCccEEEEEEEeCCCCCCcceEEEEEECCcccCCCh-----HHHHHHHHHh
Confidence 5567899999999988 9999999999865554332 1345655544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-15 Score=138.25 Aligned_cols=108 Identities=19% Similarity=0.298 Sum_probs=91.0
Q ss_pred EEEEEEEeecCCCCCCCC--------------CCCcEEEEEECCeEEeeecccCCCCCCcccceEEEEecCC-CCCcEEE
Q 004208 202 LRVNVIEAQDLVPKQRNR--------------NPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEP-FDDPLIL 266 (768)
Q Consensus 202 L~V~v~~a~~L~~~d~~~--------------~~dpyV~v~lg~~~~~T~~i~~~t~nP~wne~f~f~~~~~-~~~~L~i 266 (768)
|.|+|++|++|+.+|..+ .+||||++.+++++.+|+++++ +.||+|||+|.|.+..+ ..+.|.|
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~-t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKN-SYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcC-CCCCCcceEEEEEeeCCCcCCEEEE
Confidence 789999999999988543 6899999999999999999997 99999999999997543 4568999
Q ss_pred EEEeccCCCCCceeEEEEEeccccccccCC---CCCCceeEEcccCc
Q 004208 267 TVEDKLGDNKEECLGRLVLPLSKAGKRFLP---LPAAAIWYNLERNI 310 (768)
Q Consensus 267 ~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~---~~~~~~w~~L~~~~ 310 (768)
+|||+|..+++++||++.+++.++...... ....++|+.|.++.
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 999999988999999999999988743111 11357899998764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-15 Score=137.95 Aligned_cols=115 Identities=23% Similarity=0.347 Sum_probs=93.1
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEecc--C
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKER--L 97 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~--~ 97 (768)
...+++.|.. +.+.|+|+|++|++|+..|..|.+||||++++.+ .+.+|++++++.||+|||+|.|.+.. .
T Consensus 2 ~l~~~~~y~~--~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~ 79 (134)
T cd08403 2 ELMFSLCYLP--TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENV 79 (134)
T ss_pred eEEEEEEEcC--CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHh
Confidence 4578888885 4589999999999999999999999999999852 35789999999999999999998743 4
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 148 (768)
....|.|+|||++.. ++++||++.+++..... ....|+.+...+
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~-------~~~~w~~~~~~~ 124 (134)
T cd08403 80 DNVSLIIAVVDYDRVGHNELIGVCRVGPNADGQ-------GREHWNEMLANP 124 (134)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEECCCCCCc-------hHHHHHHHHHCC
Confidence 446799999999998 89999999999763221 135666665443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-16 Score=157.95 Aligned_cols=103 Identities=27% Similarity=0.423 Sum_probs=92.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEeeecccCCCCCCcccceEEEEecCC-CCCcEEEEEEeccCC
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIF-----GNVVLKTTVSAKKTVNPTWNEDLMFVAAEP-FDDPLILTVEDKLGD 274 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~l-----g~~~~~T~~i~~~t~nP~wne~f~f~~~~~-~~~~L~i~V~d~d~~ 274 (768)
.|+|+|.+|+||.++|.+|.+||||++.+ +..+++|++++. ++||+|||+|.|.+... .+..|.|+|||||..
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEecccccccceeEEEEeccccc
Confidence 59999999999999999999999999999 345789999998 99999999999998654 466899999999999
Q ss_pred CCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 275 NKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 275 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
+++||+|+.++.+++|.+. ..+.||.|...
T Consensus 260 sRNDFMGslSFgisEl~K~-----p~~GWyKlLsq 289 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKA-----PVDGWYKLLSQ 289 (683)
T ss_pred ccccccceecccHHHHhhc-----chhhHHHHhhh
Confidence 9999999999999999853 57889998775
|
|
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=134.84 Aligned_cols=118 Identities=20% Similarity=0.288 Sum_probs=94.4
Q ss_pred EEEEEEEecC--CCCCCCCCCCCCcCcEEEEEe-----cCeeeeeccccCCCCCccccEEEEEEeCC---------CcEE
Q 004208 363 LELGILSAKE--LLPMKSRDGRGTTDAYCVAKY-----ANKWVRTRTVVDSFDPKWNEQYTWEVYDP---------YTVI 426 (768)
Q Consensus 363 l~v~v~~a~~--L~~~~~~~~~g~~dpyv~v~~-----g~~~~~T~~~~~t~nP~wne~~~~~v~~~---------~~~l 426 (768)
..++|..|.| |++. +..+.+||||++++ +.+..||+++++|+||+|||+|.|.|... ...|
T Consensus 4 ~el~i~~~~~~~l~~~---~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 4 IELTIVRCIGIPLPSG---WNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred eEEEEEEeeccccCCC---cCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence 4566666666 5553 66788999999986 34679999999999999999999999654 2479
Q ss_pred EEEEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 427 TLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 427 ~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
.++|||++.+. .+|++||++.++|+.+..+.....|++|... .....|+|+++++..
T Consensus 81 ~~~V~d~~~f~---~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~---~k~~Gg~l~v~ir~r 137 (155)
T cd08690 81 KFEVYHKGGFL---RSDKLLGTAQVKLEPLETKCEIHESVDLMDG---RKATGGKLEVKVRLR 137 (155)
T ss_pred EEEEEeCCCcc---cCCCeeEEEEEEcccccccCcceEEEEhhhC---CCCcCCEEEEEEEec
Confidence 99999998753 2799999999999999887666789998732 223458999999984
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=133.25 Aligned_cols=116 Identities=25% Similarity=0.346 Sum_probs=94.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eeeEeeeecCCCCCee-eeEEEEEeccCCCceEEEE
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-------------YKGTTIPFEKKLNPEW-NQVFAFTKERLQAISVELL 105 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-------------~~~~T~~~~~t~nP~W-ne~f~f~~~~~~~~~L~i~ 105 (768)
...|++++|+||+ ++..|.+||||++.+.+ ++++|+++++++||+| ||+|.|.+.. .+.|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 4678999999998 77789999999999953 3689999999999999 9999999853 5689999
Q ss_pred EEEcCCC----CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC-CccceEEEEEE
Q 004208 106 VKDKMIV----NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG-SRARGELMFAI 160 (768)
Q Consensus 106 V~d~~~~----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~i 160 (768)
|||++.. .+++||++.+++.++..... .....+|++|+.... +...|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~--~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHA--IGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhccccc--CCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9998653 27999999999999976532 223568999986653 34789998764
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.5e-15 Score=135.60 Aligned_cols=104 Identities=25% Similarity=0.306 Sum_probs=85.1
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEec
Q 004208 199 LWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG--N---VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDK 271 (768)
Q Consensus 199 ~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg--~---~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~ 271 (768)
.+.|+|.|++|++|+.++..+.+||||++.++ + ...+|+++++ +.||.|||+|.|.+... ....|.|+|||+
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~ 92 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKR-TLNPYYNESFSFEVPFEQIQKVHLIVTVLDY 92 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeC-CCCCcccceEEEECCHHHhCCCEEEEEEEeC
Confidence 35699999999999999999999999999994 2 3567888876 99999999999998643 234799999999
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 272 LGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 272 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
+..+++++||++.+++.... ....+|+++...
T Consensus 93 ~~~~~~~~iG~~~i~~~~~~------~~~~~W~~~~~~ 124 (136)
T cd08402 93 DRIGKNDPIGKVVLGCNATG------AELRHWSDMLAS 124 (136)
T ss_pred CCCCCCceeEEEEECCccCC------hHHHHHHHHHhC
Confidence 99999999999999997643 235666666554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=130.86 Aligned_cols=111 Identities=30% Similarity=0.474 Sum_probs=88.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccC--CCceEEEEEEEcCCC-CCce
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERL--QAISVELLVKDKMIV-NGDF 116 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~--~~~~L~i~V~d~~~~-~d~~ 116 (768)
|.|+|++|++|+.. |.+||||+++++++ .++|+++++ .||+|||+|.|.+... ....|.|.+||.+.. ++.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999875 78999999999985 479999988 9999999999998653 346788889998876 6777
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC-CccceEEEEEEEE
Q 004208 117 IGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG-SRARGELMFAIWF 162 (768)
Q Consensus 117 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~i~~ 162 (768)
+|++.++.... + .....|++|.+..+ ....|+|++.++|
T Consensus 78 ~g~v~l~~~~~--~-----~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVALSKLDL--G-----QGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEecCcCC--C-----CcceeEEECccCCCCCCcCceEEEEEEC
Confidence 77766654433 3 22579999987654 3467999998865
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=134.26 Aligned_cols=90 Identities=26% Similarity=0.406 Sum_probs=78.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEecc
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIF--GN---VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKL 272 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~l--g~---~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d 272 (768)
+.|.|+|++|+||+..+..+.+||||++.+ ++ ...+|+++++ +.||.|||+|.|.+... .+..|.|+|||++
T Consensus 15 ~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 469999999999999888899999999998 32 3568998887 99999999999987532 3457999999999
Q ss_pred CCCCCceeEEEEEecccc
Q 004208 273 GDNKEECLGRLVLPLSKA 290 (768)
Q Consensus 273 ~~~~d~~lG~~~i~l~~l 290 (768)
..+++++||++.+++.+.
T Consensus 94 ~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 94 RLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCcEeEEEEECCccC
Confidence 988999999999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.8e-16 Score=153.96 Aligned_cols=227 Identities=18% Similarity=0.262 Sum_probs=174.4
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEe--c-
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTK--E- 95 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~--~- 95 (768)
|...+..-|+-.. ..+..+|..|++|..++.++..|||++..++. .+.+|++..+++||+|||+-...- .
T Consensus 80 g~~~~~~~y~~~~--~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~ 157 (362)
T KOG1013|consen 80 GALEFELLYDSES--RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDD 157 (362)
T ss_pred cchhhhhhhhhhh--hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccc
Confidence 4566777788654 57899999999999999999999999999975 357889999999999999877762 2
Q ss_pred cCCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC------CccceEEEEEEEEcccCCc
Q 004208 96 RLQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG------SRARGELMFAIWFGTQADE 168 (768)
Q Consensus 96 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~------~~~~G~i~l~i~~~~~~d~ 168 (768)
+.....+++.|.|.+.+ .++++|+..+++..+..... .....|+.-..+.+ -+.+|+|.+++.|.+..
T Consensus 158 ~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~---k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~-- 232 (362)
T KOG1013|consen 158 DTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQR---KSFNICLEKSLPSERADRDEDEERGAILISLAYSSTT-- 232 (362)
T ss_pred hhhhhhhheeeccCcccccccCcccchhhhhccChhhc---chhhhhhhccCCcccccccchhhccceeeeeccCcCC--
Confidence 22346788889999988 89999999999988865432 12344444333211 13568887777654321
Q ss_pred cccccccccccccccccccccccceeecCCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEeeecccCCC
Q 004208 169 AFSSAWHSDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG-----NVVLKTTVSAKKT 243 (768)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg-----~~~~~T~~i~~~t 243 (768)
.-+.|++++|.+|..+|.++.+||||..++. ..+.+|++.++ +
T Consensus 233 -------------------------------~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t 280 (362)
T KOG1013|consen 233 -------------------------------PGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-T 280 (362)
T ss_pred -------------------------------CceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-c
Confidence 2388999999999999999999999999983 23567777776 9
Q ss_pred CCCcccceEEEEecCC--CCCcEEEEEEeccCCCCCceeEEEEEeccc
Q 004208 244 VNPTWNEDLMFVAAEP--FDDPLILTVEDKLGDNKEECLGRLVLPLSK 289 (768)
Q Consensus 244 ~nP~wne~f~f~~~~~--~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~ 289 (768)
.||.|++.|.|.+... ....+.|.|||++..+..+++|-+......
T Consensus 281 ~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 281 LNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYR 328 (362)
T ss_pred CCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccccc
Confidence 9999999999987654 345789999999888788899987665543
|
|
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.1e-15 Score=132.96 Aligned_cols=105 Identities=29% Similarity=0.448 Sum_probs=90.8
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEE-e--c
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFT-K--E 95 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~-~--~ 95 (768)
|..++++.||-. .+.|.|+|++|++|+..+..+.+||||++.+.+ .+.+|++++++.||+|||+|.|. + .
T Consensus 2 G~~~~~l~y~~~--~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~ 79 (123)
T cd04035 2 GTLEFTLLYDPA--NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEE 79 (123)
T ss_pred cEEEEEEEEeCC--CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence 457888999964 578999999999999988889999999999842 46899999999999999999996 3 2
Q ss_pred cCCCceEEEEEEEcCCCCCceeEEEEEcCCCCCCC
Q 004208 96 RLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKR 130 (768)
Q Consensus 96 ~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~ 130 (768)
+.....|.|+|||++..++++||++.+++.++..+
T Consensus 80 ~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 80 DIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPN 114 (123)
T ss_pred HhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCC
Confidence 34457899999999877889999999999999866
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=130.61 Aligned_cols=112 Identities=29% Similarity=0.443 Sum_probs=95.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-eeeeeccccCCCCCccccEEEEEEeC-CCcEEEEEEEeCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-KWVRTRTVVDSFDPKWNEQYTWEVYD-PYTVITLVVFDNCHLHPGG 440 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-~~~~T~~~~~t~nP~wne~~~~~v~~-~~~~l~v~v~d~~~~~~~~ 440 (768)
|+|.|++|+||+.. +..+.+||||++.+++ +.++|+++.++.||.|||.|.|.+.+ ..+.+.|+|||++.++
T Consensus 1 l~v~vi~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~--- 74 (115)
T cd04040 1 LTVDVISAENLPSA---DRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG--- 74 (115)
T ss_pred CEEEEEeeeCCCCC---CCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC---
Confidence 57899999999985 5678899999999965 55899999999999999999999987 4678999999999854
Q ss_pred CCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEE
Q 004208 441 AKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQL 484 (768)
Q Consensus 441 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l 484 (768)
++++||++.+++.++..+.....|++|... |..+.|.+.|
T Consensus 75 -~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~---g~~~~~~~~~ 114 (115)
T cd04040 75 -KDDLLGSAYIDLSDLEPEETTELTLPLDGQ---GGGKLGAVFL 114 (115)
T ss_pred -CCCceEEEEEEHHHcCCCCcEEEEEECcCC---CCccCceEEc
Confidence 899999999999999998888899999643 4445576653
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.6e-15 Score=164.57 Aligned_cols=105 Identities=19% Similarity=0.345 Sum_probs=93.5
Q ss_pred CCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCc
Q 004208 382 RGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDR 460 (768)
Q Consensus 382 ~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 460 (768)
.+++||||+|.+|++ ..||++++++.||+|||+|.|.+.++...|+++|+|+|.++ +++||.+.|||.++..|+
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-----aD~IG~a~IPL~~L~~Ge 148 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-----AQIIGTAKIPVRDIASGE 148 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-----CceeEEEEEEHHHcCCCC
Confidence 357899999999876 57999999999999999999999998889999999999875 579999999999999999
Q ss_pred eeeeeEeeeecCCCCcccccEEEEEEEEEec
Q 004208 461 IYTHSYPLVALLPNGVKKMGEVQLAVRFTCS 491 (768)
Q Consensus 461 ~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 491 (768)
..+.|++|.....+-.+..|+|++++.|.+.
T Consensus 149 ~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 149 RISGWFPVLGASGKPPKAETAIFIDMKFTPF 179 (868)
T ss_pred ceEEEEEccccCCCCCCCCcEEEEEEEEEEc
Confidence 9999999988765444556899999999865
|
|
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-14 Score=130.34 Aligned_cols=116 Identities=22% Similarity=0.319 Sum_probs=94.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCC
Q 004208 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGG 440 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~ 440 (768)
.|+|+|.+|+ |... +..+.+||||+++++++ ..+|++++++.||.|||.|.|.+. ..+.|.|+|||++.++
T Consensus 3 ~L~V~i~~a~-l~~~---~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~--- 74 (125)
T cd04021 3 QLQITVESAK-LKSN---SKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLK--- 74 (125)
T ss_pred eEEEEEEeeE-CCCC---CcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCC---
Confidence 4899999999 4442 45778999999999887 899999999999999999999985 4578999999999865
Q ss_pred CCCCceEEEEEeccccccCce-----eeeeEeeeecCCCCcccccEEEEEE
Q 004208 441 AKDSRIGKVRIRLSTLETDRI-----YTHSYPLVALLPNGVKKMGEVQLAV 486 (768)
Q Consensus 441 ~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~i~l~~ 486 (768)
.|++||++.++|+++..+.. +..|+++........+..|+|.+.+
T Consensus 75 -~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 -ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred -CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 89999999999999876421 3458888754421345669988875
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.5e-15 Score=138.08 Aligned_cols=117 Identities=27% Similarity=0.375 Sum_probs=98.3
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccC-
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERL- 97 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~- 97 (768)
|...+++.|+-. .+.|.|+|++|+||+..+..+.+||||++++.+ .+++|+++.++.||.|||+|.|.+...
T Consensus 1 G~i~~~l~y~~~--~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~ 78 (134)
T cd00276 1 GELLLSLSYLPT--AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQ 78 (134)
T ss_pred CeEEEEEEeeCC--CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHH
Confidence 345788888854 478999999999999988888999999999875 256899999999999999999997643
Q ss_pred -CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 98 -QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 98 -~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
....|.|+|||.+.. ++++||++.+++.+ .+ ....+|++|....+
T Consensus 79 l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~-----~~~~~W~~l~~~~~ 125 (134)
T cd00276 79 LEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GG-----EELEHWNEMLASPR 125 (134)
T ss_pred hCCcEEEEEEEecCCCCCCceeEEEEECCCC--CC-----cHHHHHHHHHhCCC
Confidence 367899999999987 99999999999998 22 12578999887654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=134.01 Aligned_cols=106 Identities=25% Similarity=0.357 Sum_probs=91.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEEeeecccCCCCCCcccceEEEEecCC---------------CCC
Q 004208 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFG----NVVLKTTVSAKKTVNPTWNEDLMFVAAEP---------------FDD 262 (768)
Q Consensus 202 L~V~v~~a~~L~~~d~~~~~dpyV~v~lg----~~~~~T~~i~~~t~nP~wne~f~f~~~~~---------------~~~ 262 (768)
|+|.|++|++|+.+ ..+.+||||+++++ ++.++|+++++ +.||.|||+|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEcccccccccccccccccccccc
Confidence 57899999999988 77899999999997 78899999997 99999999999998765 355
Q ss_pred cEEEEEEeccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccCccCc
Q 004208 263 PLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANG 313 (768)
Q Consensus 263 ~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g 313 (768)
.|.|+|||++..+++++||++.+++.++.. ......||+|++.+..+
T Consensus 79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~----~~~~~~W~~L~~~~~~~ 125 (137)
T cd08675 79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQ----AGSHQAWYFLQPREAPG 125 (137)
T ss_pred EEEEEEEcCCcCcCCcEEEEEEEehhhccC----CCcccceEecCCcCCCC
Confidence 899999999988889999999999999873 24578999999885433
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-14 Score=129.06 Aligned_cols=112 Identities=30% Similarity=0.533 Sum_probs=88.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCC---CcEEEEEEEeCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDP---YTVITLVVFDNCHLHP 438 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~---~~~l~v~v~d~~~~~~ 438 (768)
|+|.|++|+||+. . |.+||||+++++++ .++|+++++ .||.|||+|.|.+.+. ...|.|.+||.+..+
T Consensus 2 L~v~vi~a~~l~~----~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~- 73 (117)
T cd08383 2 LRLRILEAKNLPS----K--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD- 73 (117)
T ss_pred eEEEEEEecCCCc----C--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-
Confidence 7899999999986 2 78999999999885 589999988 9999999999999863 357888899987632
Q ss_pred CCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 439 GGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 439 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
++..+|++.|. .+..+.....||+|...+. +.+..|+|+|+++|
T Consensus 74 ---~~~~~g~v~l~--~~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~ 117 (117)
T cd08383 74 ---RDIVIGKVALS--KLDLGQGKDEWFPLTPVDP-DSEVQGSVRLRARY 117 (117)
T ss_pred ---CeeEEEEEEec--CcCCCCcceeEEECccCCC-CCCcCceEEEEEEC
Confidence 56666665554 4455666789999976544 34467999999875
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=132.80 Aligned_cols=104 Identities=22% Similarity=0.377 Sum_probs=83.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEecc
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIF--GN---VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKL 272 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~l--g~---~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d 272 (768)
+.|.|+|++|++|+..|..+.+||||++.+ +. +..+|+++++ +.||.|||+|.|.+... ....|.|+|||+|
T Consensus 14 ~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d 92 (135)
T cd08410 14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG-TIDPFYNESFSFKVPQEELENVSLVFTVYGHN 92 (135)
T ss_pred CeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccC-CCCCccceeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 569999999999999998899999999998 22 3568888887 99999999999998543 2346999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 273 GDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 273 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
..+++++||++.++..... .....+|+.+...
T Consensus 93 ~~~~~~~iG~~~l~~~~~~-----~~~~~~W~~l~~~ 124 (135)
T cd08410 93 VKSSNDFIGRIVIGQYSSG-----PSETNHWRRMLNS 124 (135)
T ss_pred CCCCCcEEEEEEEcCccCC-----chHHHHHHHHHhC
Confidence 9899999999987654332 1224677777665
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=128.75 Aligned_cols=101 Identities=23% Similarity=0.378 Sum_probs=86.2
Q ss_pred CCCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCceeEEEEEcCCCCCCCCCCC
Q 004208 56 VTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPD 134 (768)
Q Consensus 56 ~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~ 134 (768)
.+|.+||||+++++++ ..+|++++++.||+|||+|.|.+.+.....|.|+|||.+..+|++||++.++|.++....
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~--- 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDAT--- 85 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhh---
Confidence 4788999999999985 579999999999999999999998776788999999999888999999999999985432
Q ss_pred CCCCCeEEEcccCCCCccceEEEEEEEEcc
Q 004208 135 SPLAPEWKRLEAKDGSRARGELMFAIWFGT 164 (768)
Q Consensus 135 ~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~ 164 (768)
....+|++|.+. ..|+|++++.|.+
T Consensus 86 -~~~~~w~~L~~~----~~G~i~~~~~~~p 110 (111)
T cd04052 86 -SVGQQWFPLSGN----GQGRIRISALWKP 110 (111)
T ss_pred -hccceeEECCCC----CCCEEEEEEEEec
Confidence 125799999862 4599999988754
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-14 Score=131.87 Aligned_cols=92 Identities=27% Similarity=0.340 Sum_probs=81.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEEeeecccCCCCCCcccceEEEEecCC----CCCcEEEEE
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG-------NVVLKTTVSAKKTVNPTWNEDLMFVAAEP----FDDPLILTV 268 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg-------~~~~~T~~i~~~t~nP~wne~f~f~~~~~----~~~~L~i~V 268 (768)
..|+|+|++|++|+..+..+.+||||++++. ...++|+++++ +.||+|||+|.|.+... ....|.|+|
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcC-CCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 3699999999999999888999999999994 35789999987 99999999999998653 345799999
Q ss_pred EeccCCCCCceeEEEEEecccccc
Q 004208 269 EDKLGDNKEECLGRLVLPLSKAGK 292 (768)
Q Consensus 269 ~d~d~~~~d~~lG~~~i~l~~l~~ 292 (768)
||++..+++++||++.++|+++..
T Consensus 95 ~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 95 KDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EecCCCCCCcEeEEEEEeHHHCCc
Confidence 999998889999999999999873
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=134.15 Aligned_cols=102 Identities=28% Similarity=0.471 Sum_probs=88.3
Q ss_pred ecCCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------eEEeeecccCCCCC
Q 004208 195 VSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN-----------------------------VVLKTTVSAKKTVN 245 (768)
Q Consensus 195 ~~p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~-----------------------------~~~~T~~i~~~t~n 245 (768)
..|..+.|.|+|++|+||..+|..|.+||||++.++. +.++|+++.+ +.|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tln 101 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLN 101 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCC
Confidence 3467889999999999999999999999999999853 2368888887 999
Q ss_pred CcccceEEEEecCCCCCcEEEEEEeccCCCCCceeEEEEEeccccccccCCCCCCceeEEc
Q 004208 246 PTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNL 306 (768)
Q Consensus 246 P~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L 306 (768)
|.|||+|.|.+.......|.|+|||++ +++||++.++++++.. ...++||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-----~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-----CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-----CCCCCeEeC
Confidence 999999999997766778999999986 7899999999999872 236899986
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-14 Score=131.61 Aligned_cols=103 Identities=26% Similarity=0.301 Sum_probs=85.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEecc
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG--N---VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKL 272 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg--~---~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d 272 (768)
+.|.|+|++|++|+..|..+.+||||++.+. + .+.+|+++++ +.||.|||+|.|.+... ....|.|+|||++
T Consensus 15 ~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~-t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 15 NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKC-TLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccC-CCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 3599999999999999989999999999983 2 2568888887 99999999999998643 3446889999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 273 GDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 273 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
..+++++||++.+++.... ....+|++|...
T Consensus 94 ~~~~~~~iG~~~~~~~~~~------~~~~~w~~l~~~ 124 (136)
T cd08404 94 RVTKNEVIGRLVLGPKASG------SGGHHWKEVCNP 124 (136)
T ss_pred CCCCCccEEEEEECCcCCC------chHHHHHHHHhC
Confidence 9999999999999998722 246788887654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.57 E-value=4e-14 Score=129.86 Aligned_cols=116 Identities=23% Similarity=0.320 Sum_probs=97.5
Q ss_pred cEEEEEEEEeecCCCCC--CCCCCCcEEEEEEC------CeeeEeeeecCCC-CCeeeeEEEEEeccCCCceEEEEEEEc
Q 004208 39 EFLYVRIVRARDLQVNQ--VTGTCDPYVEVKIG------NYKGTTIPFEKKL-NPEWNQVFAFTKERLQAISVELLVKDK 109 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d--~~g~~dPyv~v~~~------~~~~~T~~~~~t~-nP~Wne~f~f~~~~~~~~~L~i~V~d~ 109 (768)
..|+|+|++|+||+..+ ..+.+||||++++. ..+.+|+++.++. ||+|||+|.|.+.......|.|+|||.
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 36999999999999887 57889999999994 3567999887775 999999999998766567899999999
Q ss_pred CCCCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCC-ccceEEEEEEEE
Q 004208 110 MIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS-RARGELMFAIWF 162 (768)
Q Consensus 110 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~i~~ 162 (768)
+..++++||++.+++.++..+ ..|++|.+..+. ...|.|.+.+++
T Consensus 82 ~~~~~~~iG~~~~~l~~l~~g--------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSGDDDFLGQACLPLDSLRQG--------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCCcEeEEEEEEhHHhcCc--------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 987899999999999998543 578999887664 356899888764
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.56 E-value=4e-14 Score=127.50 Aligned_cols=105 Identities=17% Similarity=0.194 Sum_probs=82.2
Q ss_pred CCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe--cC---eeeeeccccCCC-CCccccEEEEEEeCC--CcEEEE
Q 004208 357 PPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKY--AN---KWVRTRTVVDSF-DPKWNEQYTWEVYDP--YTVITL 428 (768)
Q Consensus 357 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--g~---~~~~T~~~~~t~-nP~wne~~~~~v~~~--~~~l~v 428 (768)
.|..|.|.|.|++|+||+++ +..+.+||||+|++ ++ .+.||+++++|+ ||.|||.|.|+|... ...|.|
T Consensus 10 ~p~~~rLtV~VikarnL~~~---~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v 86 (135)
T cd08692 10 QAVNSRIQLQILEAQNLPSS---STPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLI 86 (135)
T ss_pred cCcCCeEEEEEEEccCCCcc---cCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEE
Confidence 46778899999999999986 34456799999988 22 358999999996 699999999999853 337999
Q ss_pred EEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeee
Q 004208 429 VVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLV 469 (768)
Q Consensus 429 ~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 469 (768)
+|||++..+ ++++||++.++.+.... ....+|..+.
T Consensus 87 ~v~d~~~~~----~n~~IG~v~lG~~~~~~-~~~~hW~~m~ 122 (135)
T cd08692 87 KLYSRSSVR----RKHFLGQVWISSDSSSS-EAVEQWKDTI 122 (135)
T ss_pred EEEeCCCCc----CCceEEEEEECCccCCc-hhhhhHHHHH
Confidence 999998755 89999999999976432 2234565554
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-14 Score=131.00 Aligned_cols=104 Identities=24% Similarity=0.301 Sum_probs=83.8
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEec
Q 004208 199 LWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG--N---VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDK 271 (768)
Q Consensus 199 ~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg--~---~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~ 271 (768)
.+.|+|+|++|++|+..+..+.+||||++.+. + ...+|+++++ +.||.|||+|.|.+... ....|.|+|||+
T Consensus 13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~ 91 (134)
T cd08403 13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN-TLNPTYNEALVFDVPPENVDNVSLIIAVVDY 91 (134)
T ss_pred CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccC-CCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 35799999999999999999999999999983 2 3568888776 99999999999987543 234699999999
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 272 LGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 272 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
+..+++++||++.+++.... .....|+++...
T Consensus 92 ~~~~~~~~IG~~~l~~~~~~------~~~~~w~~~~~~ 123 (134)
T cd08403 92 DRVGHNELIGVCRVGPNADG------QGREHWNEMLAN 123 (134)
T ss_pred CCCCCCceeEEEEECCCCCC------chHHHHHHHHHC
Confidence 99999999999999876322 234567766544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-14 Score=131.75 Aligned_cols=104 Identities=21% Similarity=0.365 Sum_probs=84.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C---eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEec
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG---N---VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDK 271 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg---~---~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~ 271 (768)
+.|.|+|++|+||+..+..+.+||||++.+. + .+.+|++.++ +.||+|||+|.|.+... ....|.|+|||+
T Consensus 15 ~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~ 93 (138)
T cd08408 15 GRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQLSEVTLMFSVYNK 93 (138)
T ss_pred CeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHHhCccEEEEEEEEC
Confidence 4699999999999999988999999999993 2 2568998886 99999999999998643 456899999999
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 272 LGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 272 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
+..+++++||++.+++..... ....+|+.+...
T Consensus 94 ~~~~~~~~iG~v~l~~~~~~~-----~~~~hW~~~l~~ 126 (138)
T cd08408 94 RKMKRKEMIGWFSLGLNSSGE-----EEEEHWNEMKES 126 (138)
T ss_pred CCCCCCcEEEEEEECCcCCCc-----hHHHHHHHHHhC
Confidence 999999999999998875431 123566665443
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.2e-14 Score=129.30 Aligned_cols=115 Identities=16% Similarity=0.271 Sum_probs=95.5
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-----
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYK-GTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV----- 112 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~----- 112 (768)
..|.|.|++|++|+.++ +|||++.+++++ .||+++.++.||.|||.|.|..... ...|+|.||+.+..
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcccccc
Confidence 57999999999999876 899999999976 6999999999999999999975443 46799999866532
Q ss_pred CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCC---------ccceEEEEEEEEcc
Q 004208 113 NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS---------RARGELMFAIWFGT 164 (768)
Q Consensus 113 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~---------~~~G~i~l~i~~~~ 164 (768)
++++||++.|++.++..+. ....||+|.+..+. ...+.|++++.|.+
T Consensus 85 ~~~~IG~V~Ip~~~l~~~~-----~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSRQ-----FVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred CCcEEEEEEEEHHHhcCCC-----cccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 5799999999999998653 36899999987654 23478889888864
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.3e-14 Score=130.58 Aligned_cols=103 Identities=24% Similarity=0.276 Sum_probs=81.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEecc
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN-----VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKL 272 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~-----~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d 272 (768)
+.|.|+|++|+||+..+ .+.+||||++.+.. .+.+|+++++ +.||.|||+|.|.+... ....|.|+|||.+
T Consensus 15 ~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~-~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~ 92 (137)
T cd08409 15 NRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDG-AASPSFNESFSFKVTSRQLDTASLSLSVMQSG 92 (137)
T ss_pred CeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeC-CCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence 46999999999999988 78899999999832 3568888876 99999999999998543 3468999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEccc
Q 004208 273 GDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLER 308 (768)
Q Consensus 273 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~ 308 (768)
..+++++||++.++...... +....+|..+..
T Consensus 93 ~~~~~~~lG~v~ig~~~~~~----~~~~~hW~~~~~ 124 (137)
T cd08409 93 GVRKSKLLGRVVLGPFMYAR----GKELEHWNDMLS 124 (137)
T ss_pred CCCCcceEEEEEECCcccCC----ChHHHHHHHHHh
Confidence 88899999999998654321 123455655544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.3e-14 Score=128.34 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=91.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-------------eeeeeccccCCCCCcc-ccEEEEEEeCCCcEEEE
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-------------KWVRTRTVVDSFDPKW-NEQYTWEVYDPYTVITL 428 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-------------~~~~T~~~~~t~nP~w-ne~~~~~v~~~~~~l~v 428 (768)
..|.+++|+||+. +..|++||||++++.+ +.+||+++++++||.| ||.|.|.+. +++.|.|
T Consensus 3 ~~~~~~~A~~L~~----~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~v 77 (137)
T cd08691 3 FSLSGLQARNLKK----GMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLEI 77 (137)
T ss_pred EEEEEEEeCCCCC----ccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEEE
Confidence 6789999999973 5678999999999942 3689999999999999 999999985 4568999
Q ss_pred EEEeCCCCCCCCCCCCceEEEEEeccccccCc---eeeeeEeeeecCCCCcccccEEEEEE
Q 004208 429 VVFDNCHLHPGGAKDSRIGKVRIRLSTLETDR---IYTHSYPLVALLPNGVKKMGEVQLAV 486 (768)
Q Consensus 429 ~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~---~~~~~~~L~~~~~~g~~~~G~i~l~~ 486 (768)
+|||++..+ ....|++||++.|+++++.++. ....||+|.... ......|+|.|.+
T Consensus 78 ~V~D~~~~~-~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~-~~s~v~G~~~l~~ 136 (137)
T cd08691 78 EVKDKFAKS-RPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT-PTDHVSGQLTFRF 136 (137)
T ss_pred EEEecCCCC-CccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC-CCCcEEEEEEEEe
Confidence 999986522 0012799999999999998652 356789886433 2344568888765
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.5e-14 Score=129.92 Aligned_cols=104 Identities=29% Similarity=0.386 Sum_probs=91.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEeeecccCCCCCCcccceEEEEecCC-CCCcEEEEEEeccCC
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFG-----NVVLKTTVSAKKTVNPTWNEDLMFVAAEP-FDDPLILTVEDKLGD 274 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg-----~~~~~T~~i~~~t~nP~wne~f~f~~~~~-~~~~L~i~V~d~d~~ 274 (768)
.|+|+|++|++|+..+..+.+||||++.+. .+.++|+++++ +.||.|||+|.|.+... ....|.|+|||++..
T Consensus 14 ~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 14 KLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKK-TLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred EEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecC-CCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 599999999999998888899999999995 36789999887 99999999999998754 356899999999988
Q ss_pred CCCceeEEEEEeccccccccCCCCCCceeEEcccCc
Q 004208 275 NKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNI 310 (768)
Q Consensus 275 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~ 310 (768)
+++++||++.++++++... ....||+|.+..
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-----~~~~w~~L~~~~ 123 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-----PVDGWYKLLNQE 123 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-----ccCceEECcCcc
Confidence 8899999999999998742 578899998763
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.8e-14 Score=130.09 Aligned_cols=106 Identities=25% Similarity=0.358 Sum_probs=88.3
Q ss_pred CCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEE
Q 004208 197 PKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG-----NVVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVE 269 (768)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg-----~~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~ 269 (768)
+..+.|.|+|++|++|+..|..+.+||||++.+. ....+|+++++ +.||.|||+|.|.+... ....|.|+||
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l~~~~l~~~V~ 88 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDLAKKTLEITVW 88 (133)
T ss_pred CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEec-cCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence 3446799999999999999988999999999994 24679999987 99999999999998653 3457999999
Q ss_pred eccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 270 DKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 270 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
|++..+++++||++.+++.... ....+|+++...
T Consensus 89 d~d~~~~~~~lG~~~i~l~~~~------~~~~~W~~~l~~ 122 (133)
T cd08384 89 DKDIGKSNDYIGGLQLGINAKG------ERLRHWLDCLKN 122 (133)
T ss_pred eCCCCCCccEEEEEEEecCCCC------chHHHHHHHHhC
Confidence 9998888999999999997522 235678877654
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-14 Score=133.55 Aligned_cols=104 Identities=21% Similarity=0.354 Sum_probs=88.4
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-----eeeeccccCCCCCccccEEEEEEeCC---CcEEEEEE
Q 004208 359 VIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-----WVRTRTVVDSFDPKWNEQYTWEVYDP---YTVITLVV 430 (768)
Q Consensus 359 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-----~~~T~~~~~t~nP~wne~~~~~v~~~---~~~l~v~v 430 (768)
..+.|.|.|++|+||+.. +..+.+||||++++.+. ..+|+++.++.||.|||+|.|.+... ...|.|+|
T Consensus 12 ~~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v 88 (134)
T cd00276 12 TAERLTVVVLKARNLPPS---DGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITV 88 (134)
T ss_pred CCCEEEEEEEEeeCCCCc---cCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence 346799999999999985 56788999999998542 57999999999999999999998764 46899999
Q ss_pred EeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeec
Q 004208 431 FDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVAL 471 (768)
Q Consensus 431 ~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 471 (768)
||.+.++ ++++||.+.+++++ .+...++|++|...
T Consensus 89 ~d~~~~~----~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 89 VDKDSVG----RNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred EecCCCC----CCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 9998754 88999999999999 45556889998755
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-15 Score=152.14 Aligned_cols=114 Identities=26% Similarity=0.429 Sum_probs=96.4
Q ss_pred cccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEecc-CCCc
Q 004208 27 RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKER-LQAI 100 (768)
Q Consensus 27 ~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~-~~~~ 100 (768)
++.+.-.+. ...|.|+|.+|+||.++|.+|.|||||++++-+ .+++|++++.++||+|||+|.|.+.. ....
T Consensus 170 rl~l~~~~~--~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~Dkdr 247 (683)
T KOG0696|consen 170 RLYLEAHIK--RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDR 247 (683)
T ss_pred eEEEEEEec--CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccc
Confidence 344443332 368999999999999999999999999999964 46799999999999999999999743 3367
Q ss_pred eEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC
Q 004208 101 SVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148 (768)
Q Consensus 101 ~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 148 (768)
.|.|+|||+|+. ++||+|+.++.+++|.... ...||.|-.+.
T Consensus 248 RlsiEvWDWDrTsRNDFMGslSFgisEl~K~p------~~GWyKlLsqe 290 (683)
T KOG0696|consen 248 RLSIEVWDWDRTSRNDFMGSLSFGISELQKAP------VDGWYKLLSQE 290 (683)
T ss_pred eeEEEEecccccccccccceecccHHHHhhcc------hhhHHHHhhhh
Confidence 899999999999 9999999999999998753 57899987664
|
|
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.9e-14 Score=126.88 Aligned_cols=97 Identities=21% Similarity=0.256 Sum_probs=82.8
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCe-------eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCC----C-
Q 004208 45 IVRARDLQVNQVTGTCDPYVEVKIGNY-------KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMI----V- 112 (768)
Q Consensus 45 i~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~----~- 112 (768)
.++|++|+..|..|.+||||++++.+. ..+|++++++.||+|||+|.|.+.......|.|+|||++. .
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 478999999998999999999999874 3899999999999999999998654446789999999996 5
Q ss_pred CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEccc
Q 004208 113 NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEA 146 (768)
Q Consensus 113 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 146 (768)
++++||++.+++.++.... ....|++|.+
T Consensus 86 ~~d~iG~~~i~l~~l~~~~-----~~~~~~~l~~ 114 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSP-----GQKLTLPLKG 114 (120)
T ss_pred CCcEEEEEEEEHHHHhcCC-----CcEEEEEccC
Confidence 9999999999999997652 2457888844
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.3e-14 Score=157.68 Aligned_cols=124 Identities=24% Similarity=0.352 Sum_probs=104.9
Q ss_pred cEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCe-eeEe
Q 004208 39 EFLYVRIVRARDLQVNQV------------------------------------------TGTCDPYVEVKIGNY-KGTT 75 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~------------------------------------------~g~~dPyv~v~~~~~-~~~T 75 (768)
|.|.|+|.+|++|+++|. .++|||||+|.++++ ..||
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 689999999999975221 247899999999886 5699
Q ss_pred eeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCC--ccc
Q 004208 76 IPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS--RAR 153 (768)
Q Consensus 76 ~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~ 153 (768)
++++++.||+|||+|.|.+.+. ...|+|+|||.|.+++++||++.|+|.++..+. ....|++|.+..++ +..
T Consensus 94 rVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge-----~vd~Wl~Ll~~~~kp~k~~ 167 (868)
T PLN03008 94 RVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGE-----RISGWFPVLGASGKPPKAE 167 (868)
T ss_pred EeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCC-----ceEEEEEccccCCCCCCCC
Confidence 9999999999999999999886 569999999999998899999999999998764 25799999887654 245
Q ss_pred eEEEEEEEEcccCCc
Q 004208 154 GELMFAIWFGTQADE 168 (768)
Q Consensus 154 G~i~l~i~~~~~~d~ 168 (768)
|+|.+++.|.+....
T Consensus 168 ~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 168 TAIFIDMKFTPFDQI 182 (868)
T ss_pred cEEEEEEEEEEcccc
Confidence 899999999876543
|
|
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.2e-14 Score=123.89 Aligned_cols=100 Identities=23% Similarity=0.350 Sum_probs=84.2
Q ss_pred CCCCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCC-CcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccc
Q 004208 380 DGRGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDP-YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLE 457 (768)
Q Consensus 380 ~~~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~-~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~ 457 (768)
...|.+||||+++++++ ..+|++++++.||.|||.|.|.+.++ .+.|.|.|+|++.+ +|++||++.++|+++.
T Consensus 8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-----~d~~iG~~~v~L~~l~ 82 (111)
T cd04052 8 SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-----HDPVLGSVSISLNDLI 82 (111)
T ss_pred ccCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-----CCCeEEEEEecHHHHH
Confidence 34688999999999885 57999999999999999999999875 46899999999874 5899999999999986
Q ss_pred c-CceeeeeEeeeecCCCCcccccEEEEEEEEEe
Q 004208 458 T-DRIYTHSYPLVALLPNGVKKMGEVQLAVRFTC 490 (768)
Q Consensus 458 ~-~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 490 (768)
. +.....||+|.+ +..|+|++++.|.+
T Consensus 83 ~~~~~~~~w~~L~~------~~~G~i~~~~~~~p 110 (111)
T cd04052 83 DATSVGQQWFPLSG------NGQGRIRISALWKP 110 (111)
T ss_pred hhhhccceeEECCC------CCCCEEEEEEEEec
Confidence 4 344578999963 24599999998853
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.2e-14 Score=126.13 Aligned_cols=90 Identities=23% Similarity=0.324 Sum_probs=81.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--EeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCCCCCc
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVV--LKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEE 278 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~~--~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~ 278 (768)
+|+|.|++|++|+..|..+.+||||++.++++. .+|+++++ +.||.|||+|.|.+..+....|.|+|||++..++++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 379999999999999999999999999998865 46777887 999999999999987777788999999999988999
Q ss_pred eeEEEEEeccccc
Q 004208 279 CLGRLVLPLSKAG 291 (768)
Q Consensus 279 ~lG~~~i~l~~l~ 291 (768)
+||++.+++.+..
T Consensus 80 ~iG~~~i~l~~~~ 92 (124)
T cd04037 80 LIGETVIDLEDRF 92 (124)
T ss_pred eeEEEEEeecccc
Confidence 9999999998765
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=8e-14 Score=121.87 Aligned_cols=79 Identities=20% Similarity=0.352 Sum_probs=68.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEc------
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDK------ 109 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~------ 109 (768)
|.|+|++|+||+ +.+||||++.+++ .+.+|+++++|+||+|||+|.|.+.. +..|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 679999999995 4589999999964 35899999999999999999999974 67999999998
Q ss_pred -CCC-CCceeEEEEEcCCC
Q 004208 110 -MIV-NGDFIGKIKIDMPD 126 (768)
Q Consensus 110 -~~~-~d~~lG~~~i~l~~ 126 (768)
|.. +|+++|++.+.|..
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccCcccEEEEEEEEECH
Confidence 344 89999888888753
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-13 Score=123.44 Aligned_cols=117 Identities=21% Similarity=0.378 Sum_probs=94.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe------cCeeeeeccccCCC-CCccccEEEEEEeCCC-cEEEEEEEeC
Q 004208 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKY------ANKWVRTRTVVDSF-DPKWNEQYTWEVYDPY-TVITLVVFDN 433 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~------g~~~~~T~~~~~t~-nP~wne~~~~~v~~~~-~~l~v~v~d~ 433 (768)
.|+|+|++|+||+.++. +..+.+||||++++ +...+||+++.++. ||.|||+|.|.+..+. ..|.++|||+
T Consensus 3 ~l~v~vi~a~~L~~~~~-~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKG-DKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCC-CCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 58999999999988521 14678999999999 34568999988776 9999999999998765 4799999999
Q ss_pred CCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 434 CHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 434 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
+.. +|++||++.++++++.++. .|++|...... ....|.|.+.+++
T Consensus 82 ~~~-----~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~-~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-----DDDFLGQACLPLDSLRQGY---RHVPLLDSKGE-PLELSTLFVHIDI 127 (128)
T ss_pred CCC-----CCcEeEEEEEEhHHhcCce---EEEEecCCCCC-CCcceeEEEEEEE
Confidence 862 6889999999999997764 67888765432 2334888888775
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=124.43 Aligned_cols=96 Identities=19% Similarity=0.289 Sum_probs=82.8
Q ss_pred EEEecCCCCCCCCCCCCCcCcEEEEEecCe-------eeeeccccCCCCCccccEEEEEEeC-CCcEEEEEEEeCCC---
Q 004208 367 ILSAKELLPMKSRDGRGTTDAYCVAKYANK-------WVRTRTVVDSFDPKWNEQYTWEVYD-PYTVITLVVFDNCH--- 435 (768)
Q Consensus 367 v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-------~~~T~~~~~t~nP~wne~~~~~v~~-~~~~l~v~v~d~~~--- 435 (768)
.++|++|++. +..|.+||||++++++. .+||++++++.||.|||.|.|.+.. ..+.|.++|||++.
T Consensus 6 ~i~a~~L~~~---d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~ 82 (120)
T cd04048 6 SISCRNLLDK---DVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSK 82 (120)
T ss_pred EEEccCCCCC---CCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcC
Confidence 3899999985 66789999999999664 3999999999999999999998753 55689999999996
Q ss_pred -CCCCCCCCCceEEEEEeccccccCceeeeeEeee
Q 004208 436 -LHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLV 469 (768)
Q Consensus 436 -~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 469 (768)
++ +|++||++.+++++|..+.....|++|.
T Consensus 83 ~~~----~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 83 DLS----DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCC----CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 44 8999999999999999877667888883
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-13 Score=123.19 Aligned_cols=98 Identities=27% Similarity=0.397 Sum_probs=81.1
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEec-----CeeeeeccccCCCCCccccEEEEEEeCC----CcEEEEEE
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYA-----NKWVRTRTVVDSFDPKWNEQYTWEVYDP----YTVITLVV 430 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g-----~~~~~T~~~~~t~nP~wne~~~~~v~~~----~~~l~v~v 430 (768)
.+.|+|+|++|+||++. +..+.+||||++.+. ....||++++++.||.|||.|.|..... ...+.|+|
T Consensus 14 ~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 14 NSALHCTIIRAKGLKAM---DANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred CCEEEEEEEEeeCCCCC---CCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 45699999999999885 566789999999883 2468999999999999999999974432 45899999
Q ss_pred EeCCCCCCCCCCCCceEEEEEeccccccCceeeee
Q 004208 431 FDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHS 465 (768)
Q Consensus 431 ~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~ 465 (768)
||++.+ ++++||.+.++|+++.+++....+
T Consensus 91 ~d~~~~-----~~~~iG~~~i~l~~l~~~~~~~~~ 120 (123)
T cd04035 91 LDEDRF-----GNDFLGETRIPLKKLKPNQTKQFN 120 (123)
T ss_pred EEcCCc-----CCeeEEEEEEEcccCCCCcceEee
Confidence 999873 588999999999999987643333
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.6e-14 Score=171.05 Aligned_cols=118 Identities=24% Similarity=0.443 Sum_probs=102.7
Q ss_pred CeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCCC--cEEEEEEEeCC
Q 004208 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDPY--TVITLVVFDNC 434 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~~--~~l~v~v~d~~ 434 (768)
...|.|.|+|++|+||.. ..|++||||++.+|++ ..||++++++.||+|||.|+|.+.+|. +.|+|+|||+|
T Consensus 1977 ~~~G~L~V~V~~a~nl~~-----~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLKQ-----SMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred hCCcceEEEEeecccccc-----ccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 457999999999999962 3578999999999965 789999999999999999999999875 68999999999
Q ss_pred CCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccE---EEEEEEEE
Q 004208 435 HLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGE---VQLAVRFT 489 (768)
Q Consensus 435 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~---i~l~~~~~ 489 (768)
.|+ ++.+|++.|++.++..++.++.||+|... +++.|+ |++++.++
T Consensus 2052 ~f~-----kd~~G~~~i~l~~vv~~~~~~~~~~L~~~----~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2052 TFG-----KSSLGKVTIQIDRVVMEGTYSGEYSLNPE----SNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred ccC-----CCCCceEEEEHHHHhcCceeeeeeecCcc----cccCCCcceEEEEEEec
Confidence 875 45999999999999999999999999742 235577 88888774
|
|
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.6e-13 Score=115.11 Aligned_cols=83 Identities=25% Similarity=0.528 Sum_probs=66.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCC-C
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCH-L 436 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~-~ 436 (768)
|.|+|++|+||+. .+||||++++++ ..+||+++++|+||+|||.|+|.+.. ...|.+.|||++. .
T Consensus 1 L~V~V~~A~~L~~--------~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFKQ--------SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCCC--------CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccc
Confidence 5799999999953 489999998853 35999999999999999999999964 6699999999831 0
Q ss_pred --CCCCCCCCceEEEEEecc
Q 004208 437 --HPGGAKDSRIGKVRIRLS 454 (768)
Q Consensus 437 --~~~~~~d~~lG~~~i~l~ 454 (768)
....++|+++|++.|.|.
T Consensus 72 ~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 72 VKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccccCcccEEEEEEEEEC
Confidence 000248999988777664
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.3e-13 Score=118.74 Aligned_cols=87 Identities=21% Similarity=0.348 Sum_probs=75.5
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEECCe------eeEeeeecCCCCCeeeeEEEEEeccCC----CceEEEEEEEcCCC
Q 004208 43 VRIVRARDLQVNQVTGTCDPYVEVKIGNY------KGTTIPFEKKLNPEWNQVFAFTKERLQ----AISVELLVKDKMIV 112 (768)
Q Consensus 43 V~i~~a~~L~~~d~~g~~dPyv~v~~~~~------~~~T~~~~~t~nP~Wne~f~f~~~~~~----~~~L~i~V~d~~~~ 112 (768)
+-.++|++|+..|..|.+||||+|++.+. .++|++++++.||+|| +|.|...++. ...|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 44569999999999999999999998653 5899999999999999 7888865432 57999999999998
Q ss_pred -CCceeEEEEEcCCCCCCC
Q 004208 113 -NGDFIGKIKIDMPDIPKR 130 (768)
Q Consensus 113 -~d~~lG~~~i~l~~l~~~ 130 (768)
+|++||++.+++.++...
T Consensus 83 ~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 83 GKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCcEEEEEEEEHHHHhcC
Confidence 999999999999999744
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-13 Score=137.46 Aligned_cols=219 Identities=18% Similarity=0.236 Sum_probs=160.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEeeecccCCCCCCcccceEEEE--ecCC-CCCcEEEEEEec
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN-----VVLKTTVSAKKTVNPTWNEDLMFV--AAEP-FDDPLILTVEDK 271 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~-----~~~~T~~i~~~t~nP~wne~f~f~--~~~~-~~~~L~i~V~d~ 271 (768)
..+.+++..|++|.+++.++..|||++..++. .+.+|++..+ ++||.|+|+..+. ..+. ....+++.|.|.
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn 171 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVLRKVVCDN 171 (362)
T ss_pred hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhhheeeccC
Confidence 35899999999999999999999999999842 3578888887 9999999986554 2232 345688899999
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceeEEcccCccCccccccccccceEEEEEecCCCcccccCcccccCccccc
Q 004208 272 LGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRST 351 (768)
Q Consensus 272 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~~~~~~~~~~~~~~~~~~~~~ 351 (768)
+.+...+++|+..+++..+.... ......|+.-..+.+ .+........|+|.+++..+
T Consensus 172 ~~~~~~~sqGq~r~~lkKl~p~q--~k~f~~cl~~~lp~~-rad~~~~E~rg~i~isl~~~------------------- 229 (362)
T KOG1013|consen 172 DKKTHNESQGQSRVSLKKLKPLQ--RKSFNICLEKSLPSE-RADRDEDEERGAILISLAYS------------------- 229 (362)
T ss_pred cccccccCcccchhhhhccChhh--cchhhhhhhccCCcc-cccccchhhccceeeeeccC-------------------
Confidence 99888999999998888776332 122334443333211 11111224456666655431
Q ss_pred cccCCCCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeCC---C
Q 004208 352 MKQLWPPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYDP---Y 423 (768)
Q Consensus 352 ~~~l~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~~---~ 423 (768)
.....+.|++++|..|..+ |.+|.+|||+..++.. .+.+|.+.+++.+|.||++|.|.+... .
T Consensus 230 ------s~~~~l~vt~iRc~~l~ss---Dsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~ 300 (362)
T KOG1013|consen 230 ------STTPGLIVTIIRCSHLASS---DSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAY 300 (362)
T ss_pred ------cCCCceEEEEEEeeeeecc---ccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhc
Confidence 2223488999999999996 7889999999998843 248999999999999999999998753 3
Q ss_pred cEEEEEEEeCCCCCCCCCCCCceEEEEEecc
Q 004208 424 TVITLVVFDNCHLHPGGAKDSRIGKVRIRLS 454 (768)
Q Consensus 424 ~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~ 454 (768)
..+.|.|||.+. +...+.+|-+...+.
T Consensus 301 ~kv~lsvgd~~~----G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 301 KKVALSVGDYDI----GKSNDSIGGSMLGGY 327 (362)
T ss_pred ceEEEeecccCC----CcCccCCCccccccc
Confidence 489999999987 446778888766554
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.5e-13 Score=111.27 Aligned_cols=81 Identities=33% Similarity=0.468 Sum_probs=74.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCce
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDF 116 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~ 116 (768)
|.|+|++|+||...+..+.+||||++.+++ ...+|++++++.||.|||+|.|.+.......|.|+|||.+.. +|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988888999999999998 679999999999999999999997766567799999999999 7999
Q ss_pred eEEEE
Q 004208 117 IGKIK 121 (768)
Q Consensus 117 lG~~~ 121 (768)
||+++
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99985
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.2e-13 Score=166.10 Aligned_cols=121 Identities=19% Similarity=0.278 Sum_probs=100.8
Q ss_pred ccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccCC-CceEEEEEEEcCC
Q 004208 34 LVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQ-AISVELLVKDKMI 111 (768)
Q Consensus 34 ~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~-~~~L~i~V~d~~~ 111 (768)
|..-.|.|.|+|++|+||. +..|++||||++++|++ +.||++++++.||+|||+|.|.++++. ...|.|+|||+|.
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred HhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 3345799999999999997 34689999999999965 789999999999999999999988764 3679999999999
Q ss_pred CCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceE---EEEEEEEc
Q 004208 112 VNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGE---LMFAIWFG 163 (768)
Q Consensus 112 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~---i~l~i~~~ 163 (768)
++++.+|.++|++.++..+. ....||+|.+..+ ..|+ |.+.+.|.
T Consensus 2053 f~kd~~G~~~i~l~~vv~~~-----~~~~~~~L~~~~~--k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2053 FGKSSLGKVTIQIDRVVMEG-----TYSGEYSLNPESN--KDGSSRTLEIEFQWS 2100 (2102)
T ss_pred cCCCCCceEEEEHHHHhcCc-----eeeeeeecCcccc--cCCCcceEEEEEEec
Confidence 97779999999999997653 2578999996422 2366 88876554
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-12 Score=115.60 Aligned_cols=87 Identities=22% Similarity=0.280 Sum_probs=73.5
Q ss_pred EEEEecCCCCCCCCCCCCCcCcEEEEEecCe------eeeeccccCCCCCccccEEEEEEeC-----CCcEEEEEEEeCC
Q 004208 366 GILSAKELLPMKSRDGRGTTDAYCVAKYANK------WVRTRTVVDSFDPKWNEQYTWEVYD-----PYTVITLVVFDNC 434 (768)
Q Consensus 366 ~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~------~~~T~~~~~t~nP~wne~~~~~v~~-----~~~~l~v~v~d~~ 434 (768)
..++|++|+.+ +..|.+||||++++++. .++|++++++.||.|| .|.|++.+ +...|.|+|||++
T Consensus 5 ~~i~a~~L~~~---d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 5 LQFSGKKLDKK---DFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEeCCCCCC---CCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 34799999985 67789999999998543 4999999999999999 68877643 2569999999999
Q ss_pred CCCCCCCCCCceEEEEEeccccccCc
Q 004208 435 HLHPGGAKDSRIGKVRIRLSTLETDR 460 (768)
Q Consensus 435 ~~~~~~~~d~~lG~~~i~l~~l~~~~ 460 (768)
.++ +|++||++.++++++..++
T Consensus 81 ~~~----~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 81 SSG----KHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCC----CCcEEEEEEEEHHHHhcCC
Confidence 865 8999999999999998654
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.2e-12 Score=137.54 Aligned_cols=178 Identities=17% Similarity=0.267 Sum_probs=122.6
Q ss_pred ceeeccchhhhHHHHHHHHhhHHHHH---HhhccccccccchhHHHHHHHHHHHHHcchhH---HHHHHHHHHHHHhhhc
Q 004208 555 QMWSMRRGKANLARLMRFLNGFGVAW---IWFDQVRRWKNPMTTTFVHVFYVIMVLFPQMI---LATFFFILFGVVIMKF 628 (768)
Q Consensus 555 ~~fs~~~~~~n~~rl~~~~~~~~~~~---~~~~~i~~W~~p~~t~~~~~~~~~~v~~p~l~---lp~~~l~l~~~~~~~~ 628 (768)
|.+|++.+..|+.++.+.+.+++.++ +.+.++++|++|..|+.+.++|+++|++|.+. +|+.++.++ +++..|
T Consensus 1 p~lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~ll~~-il~~~y 79 (359)
T PF06398_consen 1 PPLSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLLLFG-ILLPSY 79 (359)
T ss_pred CCcChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 45789999999999999999999999 99999999999999999999999999999873 555444433 333344
Q ss_pred ccCC-CCCCCCCcccccccCCCCCCCccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hccc
Q 004208 629 KRRP-RHPPHMDIKLSFADKAHPDELDEEFDTFPSSKQGHILTTRYDRLRSIAARMVTLNGDLDSQLERLQS----LIDW 703 (768)
Q Consensus 629 ~~~~-~~~~~~~~~~s~~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~~----l~~w 703 (768)
..+. ...+.... ...+.+.+.+..|+-.+. -..+...+.++||.|+.+.+.++.+.. .++|
T Consensus 80 l~~~p~~~~~~~~--------~~~~~~~~~~~~ptl~~~------s~e~~~nL~dlQn~m~~~~~~~d~~~~~~~~~~~f 145 (359)
T PF06398_consen 80 LYRHPSPTSSLPK--------SYEDHNPEPSEGPTLDKP------SREIVMNLRDLQNKMEDLSDPYDFLSSFLYPYLNF 145 (359)
T ss_pred HeecCCCcccccc--------cccccCCCcCCCCCcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 3332 21111100 000001111111111100 122345556888888888888888874 4579
Q ss_pred cCchhHHHHHHHHHHHHHHHH----HHhHHhhhhhhhee-cccCCCccC
Q 004208 704 RDPRATAMFSIFCLMAAVVFY----IVPLWILLLFAGPF-VMRHPRFRI 747 (768)
Q Consensus 704 ~~p~~t~~~~~~l~~~~~v~~----~vP~r~i~l~~g~~-~~r~P~~r~ 747 (768)
+++..|.+++++|+++.+.++ +||+|++++++|.. .+.||..++
T Consensus 146 ~~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~ 194 (359)
T PF06398_consen 146 SDENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQ 194 (359)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHH
Confidence 999999998888877766543 68999999999944 688998875
|
Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p []. |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.5e-13 Score=140.11 Aligned_cols=120 Identities=24% Similarity=0.440 Sum_probs=104.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-------
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV------- 112 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~------- 112 (768)
.+.++|+.|.+|.++|..|++||||.+.+|..+.+|+++.+.+||+|||.|.|...+. ++.|.+.|||.|..
T Consensus 296 kitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dlksklrq 374 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDLKSKLRQ 374 (1283)
T ss_pred eeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999876 78999999998751
Q ss_pred -----CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCC-ccceEEEEEEEEcccCC
Q 004208 113 -----NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS-RARGELMFAIWFGTQAD 167 (768)
Q Consensus 113 -----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~i~~~~~~d 167 (768)
+|||+|+..|.+..+... ...||.|+..... .+.|-|.+.|.+.-.++
T Consensus 375 kl~resddflgqtvievrtlsge-------mdvwynlekrtdksavsgairlhisveikge 428 (1283)
T KOG1011|consen 375 KLTRESDDFLGQTVIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHISVEIKGE 428 (1283)
T ss_pred HhhhcccccccceeEEEEecccc-------hhhhcchhhccchhhccceEEEEEEEEEcCc
Confidence 789999999999988654 4789999987653 37788888777654333
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-12 Score=135.81 Aligned_cols=125 Identities=24% Similarity=0.392 Sum_probs=104.2
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCC--
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHP-- 438 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~-- 438 (768)
..+.++|+.|+||.+ +|..|++||||.+.+|..+.||+++...+||+|||.|.|+..+..+.|.|.|||+|.--.
T Consensus 295 akitltvlcaqgl~a---kdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksk 371 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIA---KDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSK 371 (1283)
T ss_pred eeeEEeeeeccccee---cccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHH
Confidence 458899999999998 478899999999999999999999999999999999999999999999999999985210
Q ss_pred -----CCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEEec
Q 004208 439 -----GGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFTCS 491 (768)
Q Consensus 439 -----~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 491 (768)
.++.|++||+..|-+..|... ..-||.|..... +...+|.|+|.|.++.+
T Consensus 372 lrqkl~resddflgqtvievrtlsge--mdvwynlekrtd-ksavsgairlhisveik 426 (1283)
T KOG1011|consen 372 LRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEKRTD-KSAVSGAIRLHISVEIK 426 (1283)
T ss_pred HHHHhhhcccccccceeEEEEecccc--hhhhcchhhccc-hhhccceEEEEEEEEEc
Confidence 026899999999999988653 367999865432 33456988888887643
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-11 Score=103.45 Aligned_cols=82 Identities=32% Similarity=0.492 Sum_probs=74.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCCCCCc
Q 004208 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGN---VVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNKEE 278 (768)
Q Consensus 202 L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~---~~~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~ 278 (768)
|+|+|++|+||+..+..+.+||||++.+++ ..++|+++++ +.+|.|+|+|.|.+..+..+.|.|+|||++..++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence 689999999999988888999999999966 6799999987 899999999999987776667999999999988899
Q ss_pred eeEEEE
Q 004208 279 CLGRLV 284 (768)
Q Consensus 279 ~lG~~~ 284 (768)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-10 Score=130.57 Aligned_cols=127 Identities=16% Similarity=0.234 Sum_probs=105.9
Q ss_pred eeEEEEEEEEecCCCCCCC---------------CCCCCCcCcEEEEEecCee-eeeccccCC-CCCccccEEEEEEeCC
Q 004208 360 IGVLELGILSAKELLPMKS---------------RDGRGTTDAYCVAKYANKW-VRTRTVVDS-FDPKWNEQYTWEVYDP 422 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~---------------~~~~g~~dpyv~v~~g~~~-~~T~~~~~t-~nP~wne~~~~~v~~~ 422 (768)
-|.|.++|++|++|+.++- ..+.+.+|||+.|.+++.+ .||+++.+. .||.|||.|.+++..+
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 3779999999999986310 1234678999999998755 799999874 6999999999999999
Q ss_pred CcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEEec
Q 004208 423 YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFTCS 491 (768)
Q Consensus 423 ~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 491 (768)
...+++.|.|.+.++ ..+||.+.||+.++..|..+++|+|+.+...+-.+...+|+++++|...
T Consensus 87 ~~~v~f~vkd~~~~g-----~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 ASNIIFTVKDDNPIG-----ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred cceEEEEEecCCccC-----ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 999999999999875 5699999999999999999999999988754333333489999999864
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=100.52 Aligned_cols=99 Identities=30% Similarity=0.541 Sum_probs=85.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCceeE
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGN-YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFIG 118 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~lG 118 (768)
|.|+|++|++|......+.+||||.+.+.+ ...+|.++.++.||.|||.|.|.+.......|.|+||+.+.. .++++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 578999999998766677899999999998 889999999999999999999998875578899999999988 699999
Q ss_pred EEEEcCCCCC-CCCCCCCCCCCeEEEc
Q 004208 119 KIKIDMPDIP-KRVPPDSPLAPEWKRL 144 (768)
Q Consensus 119 ~~~i~l~~l~-~~~~~~~~~~~~w~~L 144 (768)
++.+++.++. .. .....|++|
T Consensus 81 ~~~~~l~~l~~~~-----~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSG-----KEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcC-----CcCcceecC
Confidence 9999999987 22 224667764
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-10 Score=104.28 Aligned_cols=93 Identities=20% Similarity=0.282 Sum_probs=77.5
Q ss_pred EEEEEEEecCCCCCCCCCCCC--CcCcEEEEEecC---eeeeeccccCCCC--CccccEEEEEEeCC-------------
Q 004208 363 LELGILSAKELLPMKSRDGRG--TTDAYCVAKYAN---KWVRTRTVVDSFD--PKWNEQYTWEVYDP------------- 422 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g--~~dpyv~v~~g~---~~~~T~~~~~t~n--P~wne~~~~~v~~~------------- 422 (768)
|+|.|++|+|++..+. +..| .+||||++.+.+ +..+|.++++++| |.||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~-~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDDT-NITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCccccc-ccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 8999999999765432 3345 599999999843 5699999999998 99999999987641
Q ss_pred -----------CcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCc
Q 004208 423 -----------YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDR 460 (768)
Q Consensus 423 -----------~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 460 (768)
...|.++|||+|.++ +|++||.++++|..+..+.
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s----~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFS----PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccC----CCCcceEEEEEhhhccccc
Confidence 247999999999976 8999999999999988764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-10 Score=104.12 Aligned_cols=91 Identities=25% Similarity=0.353 Sum_probs=77.9
Q ss_pred EEEEEEEeecCCCCC--CCC--CCCcEEEEEECC---eeeEeeeecCCCC--CeeeeEEEEEecc---------------
Q 004208 41 LYVRIVRARDLQVNQ--VTG--TCDPYVEVKIGN---YKGTTIPFEKKLN--PEWNQVFAFTKER--------------- 96 (768)
Q Consensus 41 L~V~i~~a~~L~~~d--~~g--~~dPyv~v~~~~---~~~~T~~~~~t~n--P~Wne~f~f~~~~--------------- 96 (768)
|+|.|.+|++++..+ ..| .+||||++.+.+ .+++|.+..+++| |+||+.|.|++.-
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999966543 356 499999999986 4689999999999 9999999988533
Q ss_pred --------CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCC
Q 004208 97 --------LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRV 131 (768)
Q Consensus 97 --------~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~ 131 (768)
.....|.++|||.|.+ +|++||++.++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 3457899999999999 9999999999999987653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-10 Score=99.88 Aligned_cols=90 Identities=34% Similarity=0.564 Sum_probs=80.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCce
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNY---KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDF 116 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~---~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~ 116 (768)
|.|+|++|++|...+..+..+|||++++.+. ..+|+++.++.||.|||+|.|.+.......|.|+|||.+.. .+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 7899999999988765578899999999975 78999999999999999999998876578999999999987 7999
Q ss_pred eEEEEEcCCCCCCC
Q 004208 117 IGKIKIDMPDIPKR 130 (768)
Q Consensus 117 lG~~~i~l~~l~~~ 130 (768)
+|.+.+++.++..+
T Consensus 82 ~G~~~~~l~~~~~~ 95 (101)
T smart00239 82 IGQVTIPLSDLLLG 95 (101)
T ss_pred eEEEEEEHHHcccC
Confidence 99999999988665
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.5e-10 Score=99.03 Aligned_cols=99 Identities=28% Similarity=0.494 Sum_probs=84.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-eeeeeccccCCCCCccccEEEEEEeC-CCcEEEEEEEeCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-KWVRTRTVVDSFDPKWNEQYTWEVYD-PYTVITLVVFDNCHLHPGG 440 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-~~~~T~~~~~t~nP~wne~~~~~v~~-~~~~l~v~v~d~~~~~~~~ 440 (768)
|.|.|++|++|... ...+.++|||.+.+.+ ..++|+++.++.||.||+.|.|.+.. ....+.|+|||.+..+
T Consensus 1 l~v~i~~~~~l~~~---~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~--- 74 (102)
T cd00030 1 LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS--- 74 (102)
T ss_pred CEEEEEeeeCCCCc---CCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---
Confidence 46899999999873 3456899999999988 88999999999999999999999988 6779999999998743
Q ss_pred CCCCceEEEEEeccccc-cCceeeeeEee
Q 004208 441 AKDSRIGKVRIRLSTLE-TDRIYTHSYPL 468 (768)
Q Consensus 441 ~~d~~lG~~~i~l~~l~-~~~~~~~~~~L 468 (768)
.+.+||.+.+++.++. .......|++|
T Consensus 75 -~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 -KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred -CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6889999999999998 55555667654
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.4e-10 Score=121.62 Aligned_cols=115 Identities=17% Similarity=0.210 Sum_probs=92.6
Q ss_pred cEEEEEEEEeecCCCC-----CCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEE
Q 004208 39 EFLYVRIVRARDLQVN-----QVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKD 108 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~-----d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d 108 (768)
..|.|+|+.|.+++.. +.....||||+|.+.| .+.+|.+..++.||+|||+|.|.+..++-..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 5799999999987521 2234579999999976 35678888889999999999999987766789999999
Q ss_pred cCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEE
Q 004208 109 KMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIW 161 (768)
Q Consensus 109 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~ 161 (768)
+|.. +|+|+|++.+++..|..+ -++++|.+..|.. ....|.+.+.
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~G--------yR~VpL~~~~g~~l~~~~Ll~~f~ 535 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEG--------IRAVPLYDERGKACSSTMLLTRFK 535 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCC--------ceeEeccCCCcCCCCCceEEEEEE
Confidence 9987 899999999999999876 4778998887764 3345555544
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.3e-10 Score=97.13 Aligned_cols=91 Identities=31% Similarity=0.541 Sum_probs=79.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe---eeeeccccCCCCCccccEEEEEEeCC-CcEEEEEEEeCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANK---WVRTRTVVDSFDPKWNEQYTWEVYDP-YTVITLVVFDNCHLHP 438 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~---~~~T~~~~~t~nP~wne~~~~~v~~~-~~~l~v~v~d~~~~~~ 438 (768)
+.+.|++|+||... ...+..+|||++++++. ..+|+++.++.||.|||.|.|.+..+ ...|.|+|||++..+
T Consensus 2 l~i~i~~~~~l~~~---~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~- 77 (101)
T smart00239 2 LTVKIISARNLPKK---DKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG- 77 (101)
T ss_pred eEEEEEEeeCCCCC---CCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc-
Confidence 68999999999874 33357899999999875 79999999999999999999999987 789999999998743
Q ss_pred CCCCCCceEEEEEeccccccCc
Q 004208 439 GGAKDSRIGKVRIRLSTLETDR 460 (768)
Q Consensus 439 ~~~~d~~lG~~~i~l~~l~~~~ 460 (768)
.+.++|.+.+++.++..+.
T Consensus 78 ---~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 ---RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred ---CCceeEEEEEEHHHcccCc
Confidence 6899999999999987664
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-09 Score=121.84 Aligned_cols=122 Identities=18% Similarity=0.296 Sum_probs=102.5
Q ss_pred cEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCe-eeEeeeecCC-CCCeeeeEEEEEeccCC
Q 004208 39 EFLYVRIVRARDLQVNQ------------------VTGTCDPYVEVKIGNY-KGTTIPFEKK-LNPEWNQVFAFTKERLQ 98 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d------------------~~g~~dPyv~v~~~~~-~~~T~~~~~t-~nP~Wne~f~f~~~~~~ 98 (768)
|.|.|+|.+|++|++.+ ..+++||||.|.+++. ..||+++.+. .||+|||.|.+.+...
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~- 86 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM- 86 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC-
Confidence 68999999999998631 1357899999999985 5799999885 6999999999999877
Q ss_pred CceEEEEEEEcCCCCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccc--eEEEEEEEEcccC
Q 004208 99 AISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRAR--GELMFAIWFGTQA 166 (768)
Q Consensus 99 ~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~--G~i~l~i~~~~~~ 166 (768)
...|+|.|.|.|.+...+||.+.|++.++..+. ....||++.+..++..+ ..|+++++|.+..
T Consensus 87 ~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~-----~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 87 ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGE-----EVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred cceEEEEEecCCccCceEEEEEEEEHHHhcCCC-----ccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 578999999999998889999999999998774 26899999988765433 4788899887644
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.1e-09 Score=118.48 Aligned_cols=115 Identities=18% Similarity=0.268 Sum_probs=91.4
Q ss_pred cEEEEEEEEeecCCCC--C----CCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEE
Q 004208 39 EFLYVRIVRARDLQVN--Q----VTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVK 107 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~--d----~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~ 107 (768)
..|.|+|+.|.+++.. + .....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..++-..|.|+||
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 5799999999887431 1 122359999999865 5679999999999999999999987765678999999
Q ss_pred EcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEE
Q 004208 108 DKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIW 161 (768)
Q Consensus 108 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~ 161 (768)
|+|.. .++|+|++.+++..|..+ -+|++|.+..|.. ..-.|.+.++
T Consensus 550 D~D~~~~ddfiGq~~lPv~~Lr~G--------yR~VpL~~~~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 550 EYDMSEKDDFGGQTCLPVSELRPG--------IRSVPLHDKKGEKLKNVRLLMRFI 597 (599)
T ss_pred ecCCCCCCCeEEEEEcchhHhcCC--------ceeEeCcCCCCCCCCCEEEEEEEE
Confidence 99987 899999999999999876 4699998877653 2334444444
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.2e-09 Score=112.29 Aligned_cols=241 Identities=21% Similarity=0.210 Sum_probs=151.2
Q ss_pred eEEeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccC----CCCCceeEEEEEeccccccccCCCCCCceeEEcc
Q 004208 232 VVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLG----DNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLE 307 (768)
Q Consensus 232 ~~~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 307 (768)
+..+|.++.. .+||.|.+.|.........+.+++.++|.+. ....+++|+....++++..... ...-+.+.
T Consensus 41 e~~rte~i~~-~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~----~~~~l~~~ 115 (529)
T KOG1327|consen 41 EVGRTEVIRN-VLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSG----LTGPLLLK 115 (529)
T ss_pred cccceeeeec-cCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhh----hhhhhhcc
Confidence 4458888987 9999999999888887778899999998764 3457899999999988773211 11111112
Q ss_pred cCccCccccccccccceEEEEEecCCCcccccCcccccCccccccccCCCCeeeEEEEEEEEecCCCCCCCCCCCCCcCc
Q 004208 308 RNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVLELGILSAKELLPMKSRDGRGTTDA 387 (768)
Q Consensus 308 ~~~~~g~~~~~~~~~g~i~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dp 387 (768)
.. .....|.|.+.+.-... .....+ -.++|.+|.. +|..+++||
T Consensus 116 ~~--------~~~~~g~iti~aee~~~------------------------~~~~~~-~~~~~~~ld~---kd~f~ksd~ 159 (529)
T KOG1327|consen 116 PG--------KNAGSGTITISAEEDES------------------------DNDVVQ-FSFRAKNLDP---KDFFSKSDP 159 (529)
T ss_pred cC--------ccCCcccEEEEeecccc------------------------cCceee-eeeeeeecCc---ccccccCCc
Confidence 11 11223555554431110 001122 2256888877 588999999
Q ss_pred EEEEEe--cC----eeeeeccccCCCCCccccEEEEEEe-----CCCcEEEEEEEeCCCCCCCCCCCCceEEEEEecccc
Q 004208 388 YCVAKY--AN----KWVRTRTVVDSFDPKWNEQYTWEVY-----DPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTL 456 (768)
Q Consensus 388 yv~v~~--g~----~~~~T~~~~~t~nP~wne~~~~~v~-----~~~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l 456 (768)
|..++- +. ..++|.+++++++|.|.. |..... ++...+.+.+||.+.. +++++||++..+++++
T Consensus 160 ~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~----~~~~~ig~~~tt~~~~ 234 (529)
T KOG1327|consen 160 YLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSN----GKHDLIGKFQTTLSEL 234 (529)
T ss_pred ceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCC----CCcCceeEecccHHHh
Confidence 999765 22 238999999999999986 444433 3456899999999984 4889999999999998
Q ss_pred ccCceeeeeEeeeecCCCC----cccccEEEEEEEEEec--cchhhhhhhcC---------------CCCC-CcCCCCCC
Q 004208 457 ETDRIYTHSYPLVALLPNG----VKKMGEVQLAVRFTCS--SFVNLLQTYSQ---------------PLLP-KMHYINPL 514 (768)
Q Consensus 457 ~~~~~~~~~~~L~~~~~~g----~~~~G~i~l~~~~~~~--~~~~~~~~~~~---------------~~~p-~~~~~~p~ 514 (768)
..... ...+++.....+. .+..|.+.+.-.-.-. ++++.+..+++ |..| ..||.+|-
T Consensus 235 ~~~~~-~~~~~~~~~~~~~~~k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~~sSLHyi~p~ 313 (529)
T KOG1327|consen 235 QEPGS-PNQIMLINPKKKAKKKSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRNPSSLHYIDPH 313 (529)
T ss_pred cccCC-cccccccChhhhhhhhcccccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCCCCcceecCCC
Confidence 73110 1223333222111 1123555443332221 34555555544 3344 38899887
Q ss_pred ChhHH
Q 004208 515 SVFQI 519 (768)
Q Consensus 515 ~~~~~ 519 (768)
..++-
T Consensus 314 ~~N~Y 318 (529)
T KOG1327|consen 314 QPNPY 318 (529)
T ss_pred CCCHH
Confidence 76664
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-09 Score=91.94 Aligned_cols=83 Identities=27% Similarity=0.391 Sum_probs=71.5
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCce
Q 004208 41 LYVRIVRARDLQVNQ---VTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDF 116 (768)
Q Consensus 41 L~V~i~~a~~L~~~d---~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~ 116 (768)
|.|+|..|+++...+ ..+.+||||.+++++. +.||++ +.||.|||+|.|+++. ...+++.|||......-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk--~nEiel~VyDk~~~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK--NNEEEVIVYDKGGDQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC--CcEEEEEEEeCCCCeecc
Confidence 679999999998777 5788999999999995 889987 6999999999999963 789999999997656667
Q ss_pred eEEEEEcCCCCC
Q 004208 117 IGKIKIDMPDIP 128 (768)
Q Consensus 117 lG~~~i~l~~l~ 128 (768)
+|...+.+++|.
T Consensus 76 i~llW~~~sdi~ 87 (109)
T cd08689 76 VGLLWLRLSDIA 87 (109)
T ss_pred eeeehhhHHHHH
Confidence 888888888774
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-10 Score=125.56 Aligned_cols=124 Identities=28% Similarity=0.518 Sum_probs=105.1
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------e------------------eeEeeeecCCCCC
Q 004208 36 EQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-------------Y------------------KGTTIPFEKKLNP 84 (768)
Q Consensus 36 ~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-------------~------------------~~~T~~~~~t~nP 84 (768)
.|...|.|.+.+|+||.++|.+|.||||+...+-. + .+-|+++++|+||
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP 190 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP 190 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence 35667889999999999999999999999876531 0 1347889999999
Q ss_pred eeeeEEEEEeccCCCceEEEEEEEcCC---------------------------------C----CCceeEEEEEcCCCC
Q 004208 85 EWNQVFAFTKERLQAISVELLVKDKMI---------------------------------V----NGDFIGKIKIDMPDI 127 (768)
Q Consensus 85 ~Wne~f~f~~~~~~~~~L~i~V~d~~~---------------------------------~----~d~~lG~~~i~l~~l 127 (768)
.|+|.|.|.+++.+.+.+.+.+||+|. . .|||+|.+.|+|.++
T Consensus 191 kW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred chhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 999999999999999999999999862 1 389999999999999
Q ss_pred CCCCCCCCCCCCeEEEcccCCC-CccceEEEEEEEEccc
Q 004208 128 PKRVPPDSPLAPEWKRLEAKDG-SRARGELMFAIWFGTQ 165 (768)
Q Consensus 128 ~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~i~~~~~ 165 (768)
+.. ...+||.|++.+. +++.|.+.+.+|..+.
T Consensus 271 P~~------Gld~WFkLepRS~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 271 PPD------GLDQWFKLEPRSDKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred Ccc------hHHHHhccCcccccccccceEEEEEEEeee
Confidence 765 2689999999875 4589999999998764
|
|
| >PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=112.67 Aligned_cols=73 Identities=21% Similarity=0.453 Sum_probs=64.1
Q ss_pred CCCceeeccchhhhHHHHHH-HHhhHHHHHHhhccccccccchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHh
Q 004208 552 VGSQMWSMRRGKANLARLMR-FLNGFGVAWIWFDQVRRWKNPMTTTFVHVFYVIMVLFPQMILATFFFILFGVVI 625 (768)
Q Consensus 552 ~~~~~fs~~~~~~n~~rl~~-~~~~~~~~~~~~~~i~~W~~p~~t~~~~~~~~~~v~~p~l~lp~~~l~l~~~~~ 625 (768)
++...||...+++|+.||.. ++..+..+.+.+.+|.+|++|.+|..++++|+ ++|+.++++|+++..++.+.+
T Consensus 83 a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf-~aW~~dll~p~~~~~L~~li~ 156 (642)
T PF11696_consen 83 AEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYF-IAWLLDLLVPAFFAFLIALIL 156 (642)
T ss_pred cccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 46778999999999999987 66688999999999999999999999888888 888889999998887766655
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-08 Score=111.74 Aligned_cols=106 Identities=21% Similarity=0.312 Sum_probs=84.3
Q ss_pred eeEEEEEEEEecCCCCC--CCCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeCCCc-EEEEEEE
Q 004208 360 IGVLELGILSAKELLPM--KSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYDPYT-VITLVVF 431 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~--~~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~~~~-~l~v~v~ 431 (768)
...|.|+|+.|+++... +..+....+||||+|.+.| ...+|.+..++.||.|||+|.|.+..|.- .|.|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 35699999999998521 1112234689999999944 34678776778999999999999998764 8999999
Q ss_pred eCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecC
Q 004208 432 DNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALL 472 (768)
Q Consensus 432 d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 472 (768)
|+|..+ +|+++|+..+|++.|..|- +..||.+.+
T Consensus 488 D~D~~~----~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~ 521 (537)
T PLN02223 488 DYEVST----ADAFCGQTCLPVSELIEGI---RAVPLYDER 521 (537)
T ss_pred ecCCCC----CCcEEEEEecchHHhcCCc---eeEeccCCC
Confidence 999744 7999999999999999986 677887654
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.9e-09 Score=115.01 Aligned_cols=117 Identities=19% Similarity=0.235 Sum_probs=93.3
Q ss_pred ccEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEE
Q 004208 38 MEFLYVRIVRARDLQVN------QVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLV 106 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V 106 (768)
...|.|+|+.+.+++.. +.....||||+|.+-| .+.+|++..++.||+|||+|.|.+.-++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 35799999999987421 2223579999999865 356899889999999999999998766667899999
Q ss_pred EEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEEE
Q 004208 107 KDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIWF 162 (768)
Q Consensus 107 ~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~~ 162 (768)
+|+|.. +|+|+|+..+++..|..+ -+..+|.+..|.. ....|.+.+++
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~G--------yR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQG--------IHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCc--------cceEeccCCCcCCCCCCeeEEEEEe
Confidence 999987 999999999999999876 4567998887764 33456665544
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.9e-09 Score=88.29 Aligned_cols=87 Identities=23% Similarity=0.379 Sum_probs=72.9
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGA 441 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~~ 441 (768)
|.|+|..|+|+...++....+.+||||.+++++. ++||++ +.||.|||.|.|+| +....+.+.|||... +
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~~-----~ 71 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKGG-----D 71 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCCC-----C
Confidence 5789999999988643225678999999999886 899998 48999999999999 667799999999863 4
Q ss_pred CCCceEEEEEecccccc
Q 004208 442 KDSRIGKVRIRLSTLET 458 (768)
Q Consensus 442 ~d~~lG~~~i~l~~l~~ 458 (768)
..-.||-.-+.++++..
T Consensus 72 ~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 72 QPVPVGLLWLRLSDIAE 88 (109)
T ss_pred eecceeeehhhHHHHHH
Confidence 66789999999998764
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-08 Score=112.83 Aligned_cols=120 Identities=22% Similarity=0.287 Sum_probs=92.5
Q ss_pred eeEEEEEEEEecCCCCCC---CCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeCCC-cEEEEEE
Q 004208 360 IGVLELGILSAKELLPMK---SRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYDPY-TVITLVV 430 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~---~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~~~-~~l~v~v 430 (768)
...|.|.|+.|++++... ..+.....||||+|.+-+ ...+|+++.++.||.|||+|.|.+..|. ..+.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 457999999999985311 012223469999998833 4589999999999999999999998865 4799999
Q ss_pred EeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 431 FDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 431 ~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
+|+|..+ .|+++|+..||++.|..|. +|.||.+.. |. ..+..+|-++|.
T Consensus 549 ~D~D~~~----~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~--G~-~l~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDMSE----KDDFGGQTCLPVSELRPGI---RSVPLHDKK--GE-KLKNVRLLMRFI 597 (599)
T ss_pred EecCCCC----CCCeEEEEEcchhHhcCCc---eeEeCcCCC--CC-CCCCEEEEEEEE
Confidence 9998754 7999999999999999986 688997554 22 335566666663
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-08 Score=112.50 Aligned_cols=115 Identities=19% Similarity=0.241 Sum_probs=91.4
Q ss_pred cEEEEEEEEeecCC----CC--CCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEE
Q 004208 39 EFLYVRIVRARDLQ----VN--QVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVK 107 (768)
Q Consensus 39 ~~L~V~i~~a~~L~----~~--d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~ 107 (768)
..|.|+|+.+.++. .. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..++-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 57999999998752 11 1234579999999964 4679999999999999999999987665678999999
Q ss_pred EcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEE
Q 004208 108 DKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIW 161 (768)
Q Consensus 108 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~ 161 (768)
|+|.. +|+|+|++.+++..|..+ -+.++|.+..|.. ....|.+.+.
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~G--------yR~V~L~~~~g~~l~~a~Lfv~~~ 579 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQG--------IRAFPLHSRKGEKYKSVKLLVKVE 579 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCc--------cceEEccCCCcCCCCCeeEEEEEE
Confidence 99987 899999999999999876 4677998887764 3345555554
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-08 Score=108.37 Aligned_cols=120 Identities=27% Similarity=0.485 Sum_probs=100.4
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccE-EEEEEeCC---CcEEEEEEEeCCCC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQ-YTWEVYDP---YTVITLVVFDNCHL 436 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~-~~~~v~~~---~~~l~v~v~d~~~~ 436 (768)
|.|.|.|..|++|+-|| ......|.||.+++++..+||.+..+++||.||.. |.|+|.|. .+.|.|.+.|+|..
T Consensus 3 gkl~vki~a~r~lpvmd--kasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMD--KASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCcccc--cccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 67899999999999996 34457899999999999999999999999999964 89999863 45899999999997
Q ss_pred CCCCCCCCceEEEEEecccccc----------CceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 437 HPGGAKDSRIGKVRIRLSTLET----------DRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 437 ~~~~~~d~~lG~~~i~l~~l~~----------~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
+ .++.||+|.|++..|.- |..+..|+|+.+.-. | -.|+|.+-+.+.
T Consensus 81 s----andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih-g--irgeinvivkvd 136 (1169)
T KOG1031|consen 81 S----ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH-G--IRGEINVIVKVD 136 (1169)
T ss_pred c----cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc-c--ccceeEEEEEEe
Confidence 6 78999999999998652 457889999976521 3 348888888775
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-08 Score=110.79 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=95.1
Q ss_pred cEEEEEEEEeecCCC---C---CCCCCCCcEEEEEECC-----eeeEeeeecCCCCCee-eeEEEEEeccCCCceEEEEE
Q 004208 39 EFLYVRIVRARDLQV---N---QVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEW-NQVFAFTKERLQAISVELLV 106 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~---~---d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W-ne~f~f~~~~~~~~~L~i~V 106 (768)
..|.|+|+.|.+|+. . +.....||||+|.+-| .+.+|+++.++.||+| ||+|.|.+..++-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 469999999998731 1 1223479999999865 3578999988899999 99999998766567899999
Q ss_pred EEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEEEcc
Q 004208 107 KDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIWFGT 164 (768)
Q Consensus 107 ~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~~~~ 164 (768)
+|+|.. .|+|+|++.+++..|..+ -+.++|.+..|.. ....|.+.+.+.+
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~G--------YR~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSG--------VRAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCC--------eeEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 999977 899999999999999765 5678998888765 4466888877653
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.9e-08 Score=105.52 Aligned_cols=180 Identities=17% Similarity=0.210 Sum_probs=127.3
Q ss_pred eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-----CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEccc
Q 004208 72 KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-----NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEA 146 (768)
Q Consensus 72 ~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 146 (768)
..+|.++.+.+||.|-+.|.+...-...+.|++.++|.+.. ..+|+|++...+..+....... .-+-++.
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~-----~~l~~~~ 116 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLT-----GPLLLKP 116 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhh-----hhhhccc
Confidence 45899999999999999998886555578999999998753 7799999999999886543211 1112221
Q ss_pred CCCCccceEEEEEEEEcccCCccccccccccccccccccccccccceeecCCeeEEEEEEEEeecCCCCCCCCCCCcEEE
Q 004208 147 KDGSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIK 226 (768)
Q Consensus 147 ~~~~~~~G~i~l~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~ 226 (768)
.. ....|+|.+.+.-....+ ....-..+|++|..+|..+++|||..
T Consensus 117 ~~-~~~~g~iti~aee~~~~~---------------------------------~~~~~~~~~~~ld~kd~f~ksd~~l~ 162 (529)
T KOG1327|consen 117 GK-NAGSGTITISAEEDESDN---------------------------------DVVQFSFRAKNLDPKDFFSKSDPYLE 162 (529)
T ss_pred Cc-cCCcccEEEEeecccccC---------------------------------ceeeeeeeeeecCcccccccCCcceE
Confidence 11 113466665542111000 12223345899999999999999998
Q ss_pred EEE--C----CeEEeeecccCCCCCCcccceEEEEe----cCCCCCcEEEEEEeccCCCCCceeEEEEEecccccc
Q 004208 227 AIF--G----NVVLKTTVSAKKTVNPTWNEDLMFVA----AEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGK 292 (768)
Q Consensus 227 v~l--g----~~~~~T~~i~~~t~nP~wne~f~f~~----~~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~ 292 (768)
+.- + ...++|+++++ +++|.|... .... ....+..+.+.+||++..++++++|++..+++++..
T Consensus 163 ~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 163 FYKRVDDGSTQMLYRTEVVKN-TLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred EEEecCCCceeeccccceecc-CCCCccccc-ccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 765 1 24679999997 999999874 3222 222356789999999999999999999999998863
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-08 Score=111.65 Aligned_cols=117 Identities=20% Similarity=0.313 Sum_probs=94.4
Q ss_pred cEEEEEEEEeecCCCC-CC---CCCCCcEEEEEECC-----eeeEee-eecCCCCCeeeeEEEEEeccCCCceEEEEEEE
Q 004208 39 EFLYVRIVRARDLQVN-QV---TGTCDPYVEVKIGN-----YKGTTI-PFEKKLNPEWNQVFAFTKERLQAISVELLVKD 108 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~-d~---~g~~dPyv~v~~~~-----~~~~T~-~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d 108 (768)
-+|.|+|+.+.+++.. +. +..+||||.|++-| .+.+|+ +..++-||.|+|+|.|.+..+.-.-|+|+|+|
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d 695 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD 695 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence 3799999999976543 22 35689999999876 357888 55778899999999999887766889999999
Q ss_pred cCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEEEc
Q 004208 109 KMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIWFG 163 (768)
Q Consensus 109 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~~~ 163 (768)
+|.. +|+|+|+.++++..|..+ -+.++|.+..|.. ...+|.+.+.+.
T Consensus 696 ~d~~~~ddF~GQ~tlP~~~L~~G--------yRhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTTLPVSELRQG--------YRHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred cCCCCcccccceeeccHHHhhCc--------eeeeeecCCCCccccceeEEEEEEEe
Confidence 9999 899999999999999775 4557888877654 456777777654
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-08 Score=109.48 Aligned_cols=118 Identities=21% Similarity=0.249 Sum_probs=94.7
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeEeeeecCCCCCeee-eEEEEEeccCCCceEEEEEEEcCC
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN------YKGTTIPFEKKLNPEWN-QVFAFTKERLQAISVELLVKDKMI 111 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~Wn-e~f~f~~~~~~~~~L~i~V~d~~~ 111 (768)
-.|.|+|+.|+.|+. ...|.+.|+|+|.+-| ..++|.++.+++||+|| |+|.|.+.+++-..|+|.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k-~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK-LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeecccccc-CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 469999999999984 3456778999999876 24566677999999999 999999999988999999999999
Q ss_pred C-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEEEccc
Q 004208 112 V-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIWFGTQ 165 (768)
Q Consensus 112 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~~~~~ 165 (768)
+ ...|||++++++..+..+ -+-.+|.+.-++. ...+|++.+...+.
T Consensus 1144 fs~~~FiaqA~yPv~~ik~G--------fRsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSG--------FRSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred cCCcceeeeeecchhhhhcc--------ceeeecccCchhhhhhhhheeeeEeccc
Confidence 9 667999999999998765 3456777665443 45667777666543
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-08 Score=108.10 Aligned_cols=124 Identities=28% Similarity=0.387 Sum_probs=103.0
Q ss_pred cEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeEeeeecCCCCCeee-eEEEEEec--cCCCceEEEEEEEcCCC-C
Q 004208 39 EFLYVRIVRARDLQVNQV-TGTCDPYVEVKIGNYKGTTIPFEKKLNPEWN-QVFAFTKE--RLQAISVELLVKDKMIV-N 113 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~-~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wn-e~f~f~~~--~~~~~~L~i~V~d~~~~-~ 113 (768)
|.|.|+|+.|++|+.+|. +...|.||++++++..++|.+..+++||.|| +.|.|.+. +++...|.|.+.|+|.. .
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 678999999999999986 4568999999999999999999999999999 45788874 67889999999999999 9
Q ss_pred CceeEEEEEcCCCCCCCCCC-----CCCCCCeEEEcccCCCCccceEEEEEEEEc
Q 004208 114 GDFIGKIKIDMPDIPKRVPP-----DSPLAPEWKRLEAKDGSRARGELMFAIWFG 163 (768)
Q Consensus 114 d~~lG~~~i~l~~l~~~~~~-----~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~ 163 (768)
+|-||++.|++..|...... ..+....|+++.+.-.+ .+|+|.+-+.+.
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg-irgeinvivkvd 136 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG-IRGEINVIVKVD 136 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc-ccceeEEEEEEe
Confidence 99999999999988544221 12445689999886533 679998876653
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.5e-08 Score=106.52 Aligned_cols=106 Identities=18% Similarity=0.256 Sum_probs=84.2
Q ss_pred eeEEEEEEEEecCCCCCCC---CCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeCCC-cEEEEEE
Q 004208 360 IGVLELGILSAKELLPMKS---RDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYDPY-TVITLVV 430 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~---~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~~~-~~l~v~v 430 (768)
...|.|.|+.++++..... .+.....||||+|.+-+ ...+|++..++.||.|||+|+|.+..|. ..|.|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 3569999999998753211 12234579999999932 3478998888999999999999999875 5899999
Q ss_pred EeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecC
Q 004208 431 FDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALL 472 (768)
Q Consensus 431 ~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 472 (768)
+|+|..+ +|+++|+..||++.|..|- +..||.+..
T Consensus 548 ~d~d~~~----~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~ 582 (598)
T PLN02230 548 HEHDINE----KDDFGGQTCLPVSEIRQGI---HAVPLFNRK 582 (598)
T ss_pred EECCCCC----CCCEEEEEEcchHHhhCcc---ceEeccCCC
Confidence 9998743 8999999999999999985 567886654
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=105.40 Aligned_cols=106 Identities=20% Similarity=0.260 Sum_probs=84.0
Q ss_pred eeEEEEEEEEecCCCC--CC-CCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeCCC-cEEEEEE
Q 004208 360 IGVLELGILSAKELLP--MK-SRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYDPY-TVITLVV 430 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~--~~-~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~~~-~~l~v~v 430 (768)
...|+|.|+.+++++. .+ ..+.....||||+|.+-+ ...||+++.++.||.|||.|+|.+..|. ..|.+.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 3579999999998531 11 112334679999999832 4589999999999999999999998875 5899999
Q ss_pred EeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecC
Q 004208 431 FDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALL 472 (768)
Q Consensus 431 ~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 472 (768)
+|+|..+ .|+++|+..||++.|..|- +..||.+..
T Consensus 531 ~d~D~~~----~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~ 565 (581)
T PLN02222 531 HEYDMSE----KDDFGGQTCLPVWELSQGI---RAFPLHSRK 565 (581)
T ss_pred EECCCCC----CCcEEEEEEcchhhhhCcc---ceEEccCCC
Confidence 9998743 7999999999999999985 567886654
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-07 Score=105.09 Aligned_cols=122 Identities=17% Similarity=0.218 Sum_probs=91.7
Q ss_pred eeEEEEEEEEecCCCC---CCCCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCcc-ccEEEEEEeCCC-cEEEEE
Q 004208 360 IGVLELGILSAKELLP---MKSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKW-NEQYTWEVYDPY-TVITLV 429 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~---~~~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~w-ne~~~~~v~~~~-~~l~v~ 429 (768)
...|+|+|++|++|+. .+..+.....||||+|.+-+ ..+||+++.++.||.| ||.|.|.+..|. ..|.+.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3469999999999732 11112234589999999832 3479999988899999 999999998875 589999
Q ss_pred EEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 430 VFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 430 v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
|+|+|..+ .|+++|+..||++.|..|- +..||.+...... ...+|-+++.+.
T Consensus 510 V~D~d~~~----~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l-~~atLfv~~~~~ 561 (567)
T PLN02228 510 VQDYDNDT----QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAY-KNTRLLVSFALD 561 (567)
T ss_pred EEeCCCCC----CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCC-CCeEEEEEEEEc
Confidence 99998744 7899999999999999885 5678866543222 235577777664
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.9e-09 Score=113.14 Aligned_cols=100 Identities=21% Similarity=0.398 Sum_probs=85.8
Q ss_pred ccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeEeeeecCCCCCeeeeEEEEEecc----
Q 004208 28 LTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-------KGTTIPFEKKLNPEWNQVFAFTKER---- 96 (768)
Q Consensus 28 ~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~Wne~f~f~~~~---- 96 (768)
+..+|..- ...|.|.|+.|+++.+-|.+|.|||||+|.+++. ..+|+++++|+||+|+|+|+|.+..
T Consensus 938 vr~~y~~n--~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~ 1015 (1103)
T KOG1328|consen 938 VRAYYNGN--AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCS 1015 (1103)
T ss_pred EEEEeecc--ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccc
Confidence 33445543 3579999999999999999999999999999972 4699999999999999999999753
Q ss_pred CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCC
Q 004208 97 LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPK 129 (768)
Q Consensus 97 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~ 129 (768)
.....|-|+|+|+|.. .+||-|++-+.|.++..
T Consensus 1016 te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1016 TETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred cccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 2257899999999999 99999999999999864
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.2e-08 Score=111.92 Aligned_cols=123 Identities=24% Similarity=0.368 Sum_probs=103.6
Q ss_pred CCCCCCcccCCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeE
Q 004208 15 PKIGGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQV 89 (768)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~ 89 (768)
|+-++|.++|..+++..|. .+.|+|-|.-|++|.--..+...||||+.++.+ -|.||+++++|.||.|||.
T Consensus 1504 ps~~p~~iggqV~LsIsY~----~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~ 1579 (1639)
T KOG0905|consen 1504 PSRNPGEIGGQVKLSISYN----NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEM 1579 (1639)
T ss_pred CCCCccccCceEEEEEEEc----CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhh
Confidence 4445677778899999998 579999999999996555466789999999976 3679999999999999999
Q ss_pred EEEE---eccCCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEccc
Q 004208 90 FAFT---KERLQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEA 146 (768)
Q Consensus 90 f~f~---~~~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 146 (768)
..+. .+.++...|.+.||..+.. .+.++|.+.++|.++...++ ...||.|..
T Consensus 1580 LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE-----~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1580 LVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKE-----SVGWYNLGA 1635 (1639)
T ss_pred eeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhh-----hcceeeccc
Confidence 9887 4566678999999999988 99999999999999877643 358999865
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.4e-07 Score=101.05 Aligned_cols=119 Identities=21% Similarity=0.353 Sum_probs=90.0
Q ss_pred EEEEEEEEecCCCCCCCCC-CCCCcCcEEEEEecC-----eeeeeccc-cCCCCCccccEEEEEEeCCC-cEEEEEEEeC
Q 004208 362 VLELGILSAKELLPMKSRD-GRGTTDAYCVAKYAN-----KWVRTRTV-VDSFDPKWNEQYTWEVYDPY-TVITLVVFDN 433 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~-~~g~~dpyv~v~~g~-----~~~~T~~~-~~t~nP~wne~~~~~v~~~~-~~l~v~v~d~ 433 (768)
.|.|.|++++|+....... .+..+||||.|+.-| ...+|+++ .++-||.|+|+|+|.+..|. +-|.+.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 6999999999876642111 234689999999844 34899966 45789999999999999886 5899999999
Q ss_pred CCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 434 CHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 434 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
|..+ +|+|+|+..||++.|..|- +-.||.+.++... ..-+|-+++.+
T Consensus 697 d~~~----~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~-~~asLfv~i~~ 743 (746)
T KOG0169|consen 697 DYIG----KDDFIGQTTLPVSELRQGY---RHVPLLSREGEAL-SSASLFVRIAI 743 (746)
T ss_pred CCCC----cccccceeeccHHHhhCce---eeeeecCCCCccc-cceeEEEEEEE
Confidence 9854 8999999999999999985 4577766542111 22455555554
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-07 Score=80.99 Aligned_cols=106 Identities=27% Similarity=0.361 Sum_probs=80.2
Q ss_pred EEEEEEEecCCCCCCCC------C----CCCCcCcEEEEEe----cCeeeeeccccCCCCCccccEEEEEEe--------
Q 004208 363 LELGILSAKELLPMKSR------D----GRGTTDAYCVAKY----ANKWVRTRTVVDSFDPKWNEQYTWEVY-------- 420 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~------~----~~g~~dpyv~v~~----g~~~~~T~~~~~t~nP~wne~~~~~v~-------- 420 (768)
|.|.|++|.||+++-.+ + ..-.-++||++.+ +++..+|+++.++..|.|+..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46889999999854210 1 1123688999986 457899999999999999999999876
Q ss_pred CC--------CcEEEEEEEeCCCCCCC------CCCCCceEEEEEeccccccCc-eeeeeEee
Q 004208 421 DP--------YTVITLVVFDNCHLHPG------GAKDSRIGKVRIRLSTLETDR-IYTHSYPL 468 (768)
Q Consensus 421 ~~--------~~~l~v~v~d~~~~~~~------~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L 468 (768)
+. ...+.++||..+.-+.+ ..+|-.||.+.||+.+|...+ .+++|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11 24899999998764322 246779999999999988764 57899985
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.3e-06 Score=99.35 Aligned_cols=119 Identities=20% Similarity=0.280 Sum_probs=90.4
Q ss_pred eeEEEEEEEEecCCCCCCC-CCC-CCCcCcEEEEEecCee-eeeccccCCCCCccccEEEEEEeCCC-cEEEEEEEeCCC
Q 004208 360 IGVLELGILSAKELLPMKS-RDG-RGTTDAYCVAKYANKW-VRTRTVVDSFDPKWNEQYTWEVYDPY-TVITLVVFDNCH 435 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~-~~~-~g~~dpyv~v~~g~~~-~~T~~~~~t~nP~wne~~~~~v~~~~-~~l~v~v~d~~~ 435 (768)
-|.|.++|++|+-+...-. ... ....|||+.|.+++.+ .|| .+..||.|+|.|.+++..+. ..+++.|.|.
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~-- 83 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK-- 83 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecC--
Confidence 4779999999973322100 001 1123999999998755 688 55669999999999999987 6899999983
Q ss_pred CCCCCCCCCceEEEEEeccccccCce-eeeeEeeeecCCCCcccccEEEEEEEEEec
Q 004208 436 LHPGGAKDSRIGKVRIRLSTLETDRI-YTHSYPLVALLPNGVKKMGEVQLAVRFTCS 491 (768)
Q Consensus 436 ~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 491 (768)
..+||.+.||+.++..|.. +++|+|+.+...+-.+. .+|+++++|...
T Consensus 84 -------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~ 132 (758)
T PLN02352 84 -------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPA 132 (758)
T ss_pred -------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEh
Confidence 4599999999999999865 89999998875332222 589999999865
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-06 Score=95.53 Aligned_cols=99 Identities=20% Similarity=0.419 Sum_probs=81.0
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEec-----Ceeeeec-cccCCCCCccc-cEEEEEEeCCC-cEEEEEEEe
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYA-----NKWVRTR-TVVDSFDPKWN-EQYTWEVYDPY-TVITLVVFD 432 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g-----~~~~~T~-~~~~t~nP~wn-e~~~~~v~~~~-~~l~v~v~d 432 (768)
-.|.|.|+.|+.|+. .+.|-+.|||.|++- ..+++|. ++.+.+||.|| |.|+|.|.+|. .-|.+.|+|
T Consensus 1065 ~~lsv~vigaRHL~k----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEec
Confidence 358899999999986 577788899999883 2345555 44678999999 99999999985 589999999
Q ss_pred CCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeee
Q 004208 433 NCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVA 470 (768)
Q Consensus 433 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 470 (768)
+|.++ ...+||++..|+..+..|- +..||++
T Consensus 1141 eDmfs----~~~FiaqA~yPv~~ik~Gf---RsVpLkN 1171 (1267)
T KOG1264|consen 1141 EDMFS----DPNFLAQATYPVKAIKSGF---RSVPLKN 1171 (1267)
T ss_pred ccccC----Ccceeeeeecchhhhhccc---eeeeccc
Confidence 99987 4559999999999998874 5567654
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00012 Score=76.84 Aligned_cols=243 Identities=15% Similarity=0.164 Sum_probs=157.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEec-------cCCCceEEEEEEEcCCC-
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKE-------RLQAISVELLVKDKMIV- 112 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~-------~~~~~~L~i~V~d~~~~- 112 (768)
+.|+|++|+|.+... .-.-.+..+++++...|..+..+..|.||....+..+ ..+...|++++|..|..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 679999999998663 2355788999999999999999999999999999854 34568999999999843
Q ss_pred -CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC--CCccceEEEEEEEEcccCCcccccc--------ccccccc-
Q 004208 113 -NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD--GSRARGELMFAIWFGTQADEAFSSA--------WHSDTAV- 180 (768)
Q Consensus 113 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~G~i~l~i~~~~~~d~~~~~~--------~~~~~~~- 180 (768)
..+.+|.+.++|.........+....+.||+|-..+ ..+.+-+|.+.+.+.+......... ...+...
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~ 158 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP 158 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence 889999999999988222222334678999998773 3345678888888765443210000 0000000
Q ss_pred -----ccccccc--ccc-ccee------ecCCeeEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeEEeeeccc
Q 004208 181 -----VSGENIM--NCR-SKVY------VSPKLWYLRVNVIEAQDLVPKQR------NRNPEVFIKAIFGNVVLKTTVSA 240 (768)
Q Consensus 181 -----~~~~~~~--~~~-~~~~------~~p~~~~L~V~v~~a~~L~~~d~------~~~~dpyV~v~lg~~~~~T~~i~ 240 (768)
.+++.+. ... ...+ .......|.|++..|.+|...-. .+...-|....+-+....|..-.
T Consensus 159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~ 238 (340)
T PF12416_consen 159 PPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFK 238 (340)
T ss_pred ccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeecc
Confidence 0000000 000 0000 01235689999999999876521 12345566777755566666666
Q ss_pred CCCCCCccc--ceEEEEecCC---------CCCcEEEEEEeccCCCCCceeEEEEEecccccc
Q 004208 241 KKTVNPTWN--EDLMFVAAEP---------FDDPLILTVEDKLGDNKEECLGRLVLPLSKAGK 292 (768)
Q Consensus 241 ~~t~nP~wn--e~f~f~~~~~---------~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~ 292 (768)
. ..+|.|. +.-.+.+... ....|.|.++. .+..||.+.|++..+..
T Consensus 239 ~-l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 239 S-LSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQPLLP 295 (340)
T ss_pred c-cCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhhccC
Confidence 5 6777663 2222433221 23467777776 46689999999999863
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.4e-06 Score=96.07 Aligned_cols=118 Identities=20% Similarity=0.328 Sum_probs=91.5
Q ss_pred cEEEEEEEEeecCCCC----CC-CCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC
Q 004208 39 EFLYVRIVRARDLQVN----QV-TGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV 112 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~----d~-~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~ 112 (768)
|.|.++|.+|+-+... +. ....||||.|.+++. ..|| .+..||+|||.|.+.+.......++|.|.|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT---- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----
Confidence 7899999999843221 11 122399999999985 4688 566799999999999988754689999998
Q ss_pred CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccce-EEEEEEEEcccCC
Q 004208 113 NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARG-ELMFAIWFGTQAD 167 (768)
Q Consensus 113 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G-~i~l~i~~~~~~d 167 (768)
+..+||.+.+++.++..+.. ....|+++.+..++...| .|.++++|.+...
T Consensus 83 ~~~~ig~~~~p~~~~~~g~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 83 KCSILGRFHIQAHQIVTEAS----FINGFFPLIMENGKPNPELKLRFMLWFRPAEL 134 (758)
T ss_pred CCeEEEEEEEEHHHhhCCCc----ccceEEEcccCCCCCCCCCEEEEEEEEEEhhh
Confidence 36899999999999987632 258999999887654445 8889999876543
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-06 Score=98.82 Aligned_cols=105 Identities=29% Similarity=0.340 Sum_probs=86.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEeeecccCCCCCCcccceEEEE---ecCCCCCcEEEEEEec
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG-----NVVLKTTVSAKKTVNPTWNEDLMFV---AAEPFDDPLILTVEDK 271 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg-----~~~~~T~~i~~~t~nP~wne~f~f~---~~~~~~~~L~i~V~d~ 271 (768)
+.|.|.|.-+++|+....+..+||||+.++- ..+.||+++++ |.||.|||...+. ........|+++||..
T Consensus 1524 ~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrk-t~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1524 GTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRK-TRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred ceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccc-cCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 5699999999999877777789999999993 24779999997 9999999998876 2223456899999999
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 272 LGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 272 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
+....+.++|.+.|+|.++... .....||+|...
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~----kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLL----KESVGWYNLGAC 1636 (1639)
T ss_pred cceeeeeeeeeeecchhhcchh----hhhcceeecccc
Confidence 8888899999999999987643 224489998754
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00068 Score=71.34 Aligned_cols=237 Identities=15% Similarity=0.200 Sum_probs=156.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEeeecccCCCCCCcccceEEEEecC-------CCCCcEEEEEEecc-C
Q 004208 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAE-------PFDDPLILTVEDKL-G 273 (768)
Q Consensus 202 L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~~~~T~~i~~~t~nP~wne~f~f~~~~-------~~~~~L~i~V~d~d-~ 273 (768)
+.|.|++|++.+... .-...|..++.++...|..+.. +..|.||..+...+.. .+...|++++|..| .
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 678999999998652 3466788999999999999988 9999999999887642 24568999999877 5
Q ss_pred CCCCceeEEEEEecccc---ccccCCCCCCceeEEcccCccCccccccccccceEEEEEecCCCcccccCc---------
Q 004208 274 DNKEECLGRLVLPLSKA---GKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEA--------- 341 (768)
Q Consensus 274 ~~~d~~lG~~~i~l~~l---~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~~~~~~~~~~~--------- 341 (768)
.+..+.+|.+.++|... .. .+.....+||+|.+...+ -.+..-++.+.++++.........
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~--~~~~~~~~W~~LL~~~~~-----y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~ 150 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQE--KNQKQKPKWYKLLSSSSK-----YKKHKPELLLSLSIEDDSKPQTPDFESFKAKPA 150 (340)
T ss_pred CCcceeccEEEEEccccccccc--cccccCCCeeEccccccc-----cccCCccEEEEEEEeccccccCCccccccccCC
Confidence 56778999999999987 32 223578899999887321 112334677777765433210000
Q ss_pred ccccC-------ccccc--------cccCC-------CCeeeEEEEEEEEecCCCCCCCC---CCCCCcCcEEEEEecCe
Q 004208 342 TNYSS-------DLRST--------MKQLW-------PPVIGVLELGILSAKELLPMKSR---DGRGTTDAYCVAKYANK 396 (768)
Q Consensus 342 ~~~~~-------~~~~~--------~~~l~-------~~~~g~l~v~v~~a~~L~~~~~~---~~~g~~dpyv~v~~g~~ 396 (768)
....+ ...+. ...+. ..+...|.|+|-.|+||..+.-. +..+.+..|....+-+.
T Consensus 151 p~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn 230 (340)
T PF12416_consen 151 PPRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGN 230 (340)
T ss_pred CcccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCc
Confidence 00000 00000 00000 13456788999999998765111 11133566777777666
Q ss_pred eeeeccccCCCCCccc--cEEEEEEeCC----------CcEEEEEEEeCCCCCCCCCCCCceEEEEEecccccc
Q 004208 397 WVRTRTVVDSFDPKWN--EQYTWEVYDP----------YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLET 458 (768)
Q Consensus 397 ~~~T~~~~~t~nP~wn--e~~~~~v~~~----------~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~ 458 (768)
.+.|...+...+|.|. +...+.++.. ...|.|.++.+ +..||.+.|++..+.+
T Consensus 231 ~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g---------~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 231 DVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG---------NQSLGSTSVPLQPLLP 295 (340)
T ss_pred EeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC---------CcEEEEEEEEhhhccC
Confidence 7777777777788764 3333766631 24788888874 4489999999999864
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.90 E-value=9.7e-06 Score=70.65 Aligned_cols=100 Identities=23% Similarity=0.330 Sum_probs=76.8
Q ss_pred EEEEEEEeecCCCCC-------------CCCCCCcEEEEEEC----CeeeEeeeecCCCCCeeeeEEEEEec--------
Q 004208 41 LYVRIVRARDLQVNQ-------------VTGTCDPYVEVKIG----NYKGTTIPFEKKLNPEWNQVFAFTKE-------- 95 (768)
Q Consensus 41 L~V~i~~a~~L~~~d-------------~~g~~dPyv~v~~~----~~~~~T~~~~~t~nP~Wne~f~f~~~-------- 95 (768)
|.|.|++|.||.+.. ..-..|+||++.+. ++..+|+++.++-.|+||..++|...
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 467888888885421 12246899999964 36789999999999999999999843
Q ss_pred -------cCCCceEEEEEEEcCCC-----------CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEc
Q 004208 96 -------RLQAISVELLVKDKMIV-----------NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRL 144 (768)
Q Consensus 96 -------~~~~~~L~i~V~d~~~~-----------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 144 (768)
-++...+.++||+.+.. +|-.||.+.|++.+|.... +....||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r----sGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR----SGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc----cCccccccC
Confidence 23457899999997642 6678999999999997764 346789875
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.64 E-value=7e-05 Score=85.05 Aligned_cols=86 Identities=16% Similarity=0.197 Sum_probs=74.7
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcE-EEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCc
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPY-VEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGD 115 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPy-v~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~ 115 (768)
.|...+++++|+ ++. .||| +.+.+|.+.++|.+.++|.||+||+...|.+.........|.|||.+.+ .++
T Consensus 53 ~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~ 125 (644)
T PLN02964 53 SGIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNT 125 (644)
T ss_pred cCeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHH
Confidence 489999999997 232 4776 6678888999999999999999999999999876667789999999999 999
Q ss_pred eeEEEEEcCCCCCCC
Q 004208 116 FIGKIKIDMPDIPKR 130 (768)
Q Consensus 116 ~lG~~~i~l~~l~~~ 130 (768)
.+|.|++++.++...
T Consensus 126 lv~~~e~~~t~f~~k 140 (644)
T PLN02964 126 LVGYCELDLFDFVTQ 140 (644)
T ss_pred hhhheeecHhhccHH
Confidence 999999999888655
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.59 E-value=6.4e-05 Score=60.73 Aligned_cols=87 Identities=14% Similarity=0.321 Sum_probs=65.0
Q ss_pred EEEEEEeecCCCCCCCCCCCc--EEE--EEEC-CeeeEeeeecCCCCCeeeeEEEEEec--cCCCceEEEEEEEcCCCCC
Q 004208 42 YVRIVRARDLQVNQVTGTCDP--YVE--VKIG-NYKGTTIPFEKKLNPEWNQVFAFTKE--RLQAISVELLVKDKMIVNG 114 (768)
Q Consensus 42 ~V~i~~a~~L~~~d~~g~~dP--yv~--v~~~-~~~~~T~~~~~t~nP~Wne~f~f~~~--~~~~~~L~i~V~d~~~~~d 114 (768)
.|++++|++|.-.... .-+| |++ +.+. +..+||++..+..||+|+|+|.|.+. .++.-.|.|.|+..-+ +.
T Consensus 2 witv~~c~d~s~~~~~-~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~-RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSC-GENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTP-RK 79 (103)
T ss_pred EEEEEEeccccccccc-CcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCC-cc
Confidence 5899999999543222 2244 443 2233 25689999999999999999999964 6667889999998322 88
Q ss_pred ceeEEEEEcCCCCCCC
Q 004208 115 DFIGKIKIDMPDIPKR 130 (768)
Q Consensus 115 ~~lG~~~i~l~~l~~~ 130 (768)
+.||.|.+++.++-.+
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 9999999999988554
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00014 Score=58.74 Aligned_cols=95 Identities=18% Similarity=0.361 Sum_probs=67.4
Q ss_pred EEEEEEeecCCCCCCC-CCCCcEEEEEE--CC-eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEeccCCCC
Q 004208 203 RVNVIEAQDLVPKQRN-RNPEVFIKAIF--GN-VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKLGDNK 276 (768)
Q Consensus 203 ~V~v~~a~~L~~~d~~-~~~dpyV~v~l--g~-~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d~~~~ 276 (768)
-|+++.|+||.-...- ..+..|++-.+ .+ ...||+.... +.||.|+|+|.|.+... .+-.|.|.|+. ...+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrg-s~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEG-SNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcC-CCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 4788999998744332 34556777544 33 4567776665 99999999999987543 45578888887 4567
Q ss_pred CceeEEEEEeccccccccCCCCCCceeEE
Q 004208 277 EECLGRLVLPLSKAGKRFLPLPAAAIWYN 305 (768)
Q Consensus 277 d~~lG~~~i~l~~l~~~~~~~~~~~~w~~ 305 (768)
.+.||.|.++++++..+ ...+|.+
T Consensus 79 Ke~iG~~sL~l~s~gee-----E~~HW~e 102 (103)
T cd08684 79 KRTIGECSLSLRTLSTQ-----ETDHWLE 102 (103)
T ss_pred cceeeEEEeecccCCHH-----Hhhhhhc
Confidence 88999999999987632 3455654
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00026 Score=80.46 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=74.3
Q ss_pred CeeEEEEEEEEeecCCCCCCCCCCCcE-EEEEECCeEEeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCCCC
Q 004208 198 KLWYLRVNVIEAQDLVPKQRNRNPEVF-IKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNK 276 (768)
Q Consensus 198 ~~~~L~V~v~~a~~L~~~d~~~~~dpy-V~v~lg~~~~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~ 276 (768)
-.|.+.+++++|+ ++. .|+| +.+.+|.+.+||.+.++ |.||+||+...|.+.........+.|||++..+.
T Consensus 52 ~~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 123 (644)
T PLN02964 52 FSGIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETSDS-TDKPVWNSEKKLLLEKNGPHLARISVFETNRLSK 123 (644)
T ss_pred ccCeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccccc-cCCcccchhhceEeccCCcceEEEEEEecCCCCH
Confidence 4578999999998 222 4776 56778999999999998 9999999999999877666667999999999999
Q ss_pred CceeEEEEEecccccc
Q 004208 277 EECLGRLVLPLSKAGK 292 (768)
Q Consensus 277 d~~lG~~~i~l~~l~~ 292 (768)
++++|.|+++|.++..
T Consensus 124 n~lv~~~e~~~t~f~~ 139 (644)
T PLN02964 124 NTLVGYCELDLFDFVT 139 (644)
T ss_pred HHhhhheeecHhhccH
Confidence 9999999999988764
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00014 Score=75.18 Aligned_cols=120 Identities=17% Similarity=0.179 Sum_probs=92.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeEeeeecCCCCCeeeeEEEEEecc---C--------CCceE
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIG-----NYKGTTIPFEKKLNPEWNQVFAFTKER---L--------QAISV 102 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~Wne~f~f~~~~---~--------~~~~L 102 (768)
..|.+.|+++.+++.....-..|-||++.+. .++.+|.++++|..|.|+|.|.+.+.. . ....+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 3577888888887654433446789988874 267899999999999999999999765 2 23679
Q ss_pred EEEEEEcCCC--CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcc
Q 004208 103 ELLVKDKMIV--NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGT 164 (768)
Q Consensus 103 ~i~V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~ 164 (768)
.|++|++..+ +|.++|.+.+.|..|...- .....++|.+... .+-|.|.+.+.+..
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~c-----ei~e~~~l~DGRK-~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMC-----EICEYLPLKDGRK-AVGGKLEVKVRIRQ 504 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhccc-----chhhceecccccc-ccCCeeEEEEEEec
Confidence 9999999988 9999999999999887652 2456678876432 25688888887753
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00044 Score=71.20 Aligned_cols=110 Identities=19% Similarity=0.248 Sum_probs=87.6
Q ss_pred CeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe-cC----eeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEe
Q 004208 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKY-AN----KWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFD 432 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-g~----~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d 432 (768)
...|.+.|.|++|++|.... .....++|||+|++ ++ ...+|+...+|++|-+.++..|.-..+...|.+.||-
T Consensus 266 d~~g~l~vEii~ar~l~~k~--~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~g 343 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKP--GSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWG 343 (405)
T ss_pred cccCceeEEEEecccccccC--CcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEec
Confidence 45688999999999998742 22337999999999 22 2478999999999988888888877778899999996
Q ss_pred CCCCCCCCCCCCceEEEEEeccccccCc-eeeeeEeeeecC
Q 004208 433 NCHLHPGGAKDSRIGKVRIRLSTLETDR-IYTHSYPLVALL 472 (768)
Q Consensus 433 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~ 472 (768)
.-.- -+.+.++|.++|-+.+|.-.. ....||+|....
T Consensus 344 dygR---md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 344 DYGR---MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred cccc---cchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 4321 247889999999999998765 788999997654
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00039 Score=71.60 Aligned_cols=113 Identities=23% Similarity=0.281 Sum_probs=89.4
Q ss_pred ccccccccEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEE
Q 004208 32 FDLVEQMEFLYVRIVRARDLQVNQVT-GTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELL 105 (768)
Q Consensus 32 ~~~~~~~~~L~V~i~~a~~L~~~d~~-g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~ 105 (768)
-++.+..|.|+|.|++|++|..+... ..++|||+|++-+ .+.+|+...+|.+|-+-+...|.-... ...|.+.
T Consensus 262 ~~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~-~k~Lq~t 340 (405)
T KOG2060|consen 262 IALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPP-GKYLQGT 340 (405)
T ss_pred hhhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCC-ccEEEEE
Confidence 45667789999999999999876543 3689999999864 367899888998888888777765443 7899999
Q ss_pred EEE-cCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 106 VKD-KMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 106 V~d-~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
||. +.+. .+.|+|.+.+-+.+|.... ...-.||+|.....
T Consensus 341 v~gdygRmd~k~fmg~aqi~l~eL~ls~----~~~igwyKlfgsss 382 (405)
T KOG2060|consen 341 VWGDYGRMDHKSFMGVAQIMLDELNLSS----SPVIGWYKLFGSSS 382 (405)
T ss_pred EeccccccchHHHhhHHHHHhhhhcccc----ccceeeeeccCCcc
Confidence 996 4455 8899999999999997763 23578999987643
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0015 Score=67.94 Aligned_cols=119 Identities=18% Similarity=0.258 Sum_probs=92.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe---c--CeeeeeccccCCCCCccccEEEEEEeC-C--C---------c
Q 004208 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKY---A--NKWVRTRTVVDSFDPKWNEQYTWEVYD-P--Y---------T 424 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~---g--~~~~~T~~~~~t~nP~wne~~~~~v~~-~--~---------~ 424 (768)
.|++.|.++.+++.. .+.-.-|.|+++++ + .+..+|.++++|.+|.|.|.|.+.+.. + + .
T Consensus 368 elel~ivrg~~~pvp---~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVP---GGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred HhHHHHhhcccCCCC---CCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 477888899888762 23335678998776 2 356889999999999999999999875 2 1 2
Q ss_pred EEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 425 VITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 425 ~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
-+.+++|.+..|. .+|.++|.+.|.|..|.+.-.+...|+|++- .....|.+.+.+++.
T Consensus 445 g~kfeifhkggf~---rSdkl~gt~nikle~Len~cei~e~~~l~DG---RK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 445 GKKFEIFHKGGFN---RSDKLTGTGNIKLEILENMCEICEYLPLKDG---RKAVGGKLEVKVRIR 503 (523)
T ss_pred CeeEEEeeccccc---cccceeceeeeeehhhhcccchhhceecccc---ccccCCeeEEEEEEe
Confidence 6899999988764 5899999999999999987777788888642 122458899888883
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.055 Score=50.05 Aligned_cols=127 Identities=14% Similarity=0.149 Sum_probs=82.6
Q ss_pred CCeeEEEEEEEEeecCCCCCCC--CCCCcEEE--EEECCeEEeeecccCCCCCCcccceEEEEecCCC------------
Q 004208 197 PKLWYLRVNVIEAQDLVPKQRN--RNPEVFIK--AIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPF------------ 260 (768)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~d~~--~~~dpyV~--v~lg~~~~~T~~i~~~t~nP~wne~f~f~~~~~~------------ 260 (768)
|...+|.+.|..++-....... +..+.-++ +.+++|.++|+.+.. +.+|.|+|.|.|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCccc-ccCCCCCCcEEEEecccccccccchhHhhc
Confidence 4446799999998754422111 34444444 445899999999998 999999999999986542
Q ss_pred -CCcEEEEEEeccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccCccCccccccccccceEEEEEec
Q 004208 261 -DDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSL 331 (768)
Q Consensus 261 -~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~ 331 (768)
.+.+.+.|.-.|..+...++|+..+++..+...- ......-+.|.+.+.+ ..-..|-+.+++.+
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~--~~~~~~~vEL~G~~~e-----~kv~~GiL~l~lEL 149 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSG--NGSTSFTVELCGVGPE-----SKVPVGILDLRLEL 149 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHHhccC--CCccceeEEEeccCCC-----CccceeEEEEEEEe
Confidence 3467788877776666789999999988876321 1111223334443221 12345777777665
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.054 Score=50.15 Aligned_cols=128 Identities=16% Similarity=0.227 Sum_probs=86.4
Q ss_pred CeeeEEEEEEEEecCCCCCCC-CCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCC--------------
Q 004208 358 PVIGVLELGILSAKELLPMKS-RDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDP-------------- 422 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~-~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~-------------- 422 (768)
+..-.|++.|..++-...--. .++...+--++-+.+++++++|+.+.-+.+|.|+|.|-|++...
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 344468888888875432100 01122233344466699999999999999999999999998632
Q ss_pred CcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCcee--eeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 423 YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIY--THSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 423 ~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
++.+.+.|.-.|..+ ...++|.-.++...+...... .....|.+.........|.+++++.+-
T Consensus 86 ~~pihivli~~d~~~----~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELl 150 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSG----ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELL 150 (156)
T ss_pred CCceEEEEEEecCCC----ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEee
Confidence 357888888877633 458999999999887654322 445556655443333569999998873
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.13 Score=48.21 Aligned_cols=87 Identities=20% Similarity=0.263 Sum_probs=60.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe--cCeee----eeccccCCCCCccccEEEEEEe--C-C-CcEEEEEEE
Q 004208 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKY--ANKWV----RTRTVVDSFDPKWNEQYTWEVY--D-P-YTVITLVVF 431 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--g~~~~----~T~~~~~t~nP~wne~~~~~v~--~-~-~~~l~v~v~ 431 (768)
.++|.|+++.++... ..+|-||.+.+ |++.. .|+.+.- .++.|||-++|++. + | ...|.|++|
T Consensus 9 ~~~v~i~~~~~~~~~------~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~ 81 (158)
T cd08398 9 NLRIKILCATYVNVN------DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSIC 81 (158)
T ss_pred CeEEEEEeeccCCCC------CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEE
Confidence 489999999998652 24688888755 77653 4544443 68999999999876 3 3 459999999
Q ss_pred eCCCCCCCCCCCCceEEEEEeccc
Q 004208 432 DNCHLHPGGAKDSRIGKVRIRLST 455 (768)
Q Consensus 432 d~~~~~~~~~~d~~lG~~~i~l~~ 455 (768)
+...-....+....||.+.++|-+
T Consensus 82 ~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 82 SVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EEecccCCCCceEEEEEEEEEEEC
Confidence 976411000123569999999886
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.072 Score=60.90 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=77.4
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeEeeee-cCCCCCeeeeE-EEEEe-ccCCCceEEEEEE
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-------YKGTTIPF-EKKLNPEWNQV-FAFTK-ERLQAISVELLVK 107 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~-~~t~nP~Wne~-f~f~~-~~~~~~~L~i~V~ 107 (768)
.+.+.|+|+++.-|-.++ ...||.|.+=| ..++|+++ .++.||+|||. |.|.. --+.-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 468999999999886554 45899999754 35678876 45689999976 88873 2222467999999
Q ss_pred EcCCCCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEE
Q 004208 108 DKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIW 161 (768)
Q Consensus 108 d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~ 161 (768)
+.+ .++||+--+++..|..+ -....|....+.- ....|.+.+.
T Consensus 778 eEg---gK~ig~RIlpvd~l~~G--------Yrhv~LRse~Nqpl~lp~Lfv~i~ 821 (1189)
T KOG1265|consen 778 EEG---GKFIGQRILPVDGLNAG--------YRHVCLRSESNQPLTLPALFVYIV 821 (1189)
T ss_pred ccC---CceeeeeccchhcccCc--------ceeEEecCCCCCccccceeEEEEE
Confidence 985 68999999999988765 3455666654431 2234444443
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.054 Score=61.89 Aligned_cols=95 Identities=19% Similarity=0.267 Sum_probs=73.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEEeeecccCCCCCCcccce-EEEE-ecCCCCCcEEEEEEe
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG-------NVVLKTTVSAKKTVNPTWNED-LMFV-AAEPFDDPLILTVED 270 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg-------~~~~~T~~i~~~t~nP~wne~-f~f~-~~~~~~~~L~i~V~d 270 (768)
+.+.|+|+++.-|..++ ...||.|.+- ...++|+++..++.||+|+|. |.|. +.-+.-..|+|.||+
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 46899999999988654 4589999993 256789999887999999876 7775 444556789999998
Q ss_pred ccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 271 KLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 271 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
. ...+||+-.+|+..+.. .-+.+.|...
T Consensus 779 E----ggK~ig~RIlpvd~l~~-------GYrhv~LRse 806 (1189)
T KOG1265|consen 779 E----GGKFIGQRILPVDGLNA-------GYRHVCLRSE 806 (1189)
T ss_pred c----CCceeeeeccchhcccC-------cceeEEecCC
Confidence 5 45799999999988762 4455666654
|
|
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.14 Score=49.04 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=59.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE----eeecccCCCCCCcccceEEEEec---CCCCCcEEEEEEec
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIF--GNVVL----KTTVSAKKTVNPTWNEDLMFVAA---EPFDDPLILTVEDK 271 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~l--g~~~~----~T~~i~~~t~nP~wne~f~f~~~---~~~~~~L~i~V~d~ 271 (768)
.++|+|+.+.++... ....+.||++.+ |++.. .|+...- ..++.|||.+.|++. -+.+..|.|+||+.
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~-~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSG-KNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCC-CCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 489999999999862 234677888755 66533 5554443 567999999999763 23567899999986
Q ss_pred cCCC----------------CCceeEEEEEeccc
Q 004208 272 LGDN----------------KEECLGRLVLPLSK 289 (768)
Q Consensus 272 d~~~----------------~d~~lG~~~i~l~~ 289 (768)
.... ....||.+.++|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 5321 23578888877765
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.49 Score=43.81 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=79.7
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCee---eeeccc-cCCCCCccccEEEEEEe---CC--C----cEE
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKW---VRTRTV-VDSFDPKWNEQYTWEVY---DP--Y----TVI 426 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~---~~T~~~-~~t~nP~wne~~~~~v~---~~--~----~~l 426 (768)
.-.+.+.|++..+++. .....||+++.|+.. ..|... ..+..-.|||.|.+.+. +. . -.+
T Consensus 6 kf~~~l~i~~l~~~p~-------~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~ 78 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS-------SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKEL 78 (143)
T ss_pred eEEEEEEEEEeECcCC-------CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEE
Confidence 3458899999998875 234567778777764 455544 34668899999988875 11 1 268
Q ss_pred EEEEEeCCCCCCCCCCCCceEEEEEeccccccC--ceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 427 TLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETD--RIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 427 ~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
.+.|+.... +++...+|.+.|+|+++.+. ......++|... .+....+++.+.+.
T Consensus 79 ~~~v~~~~~----~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~ 135 (143)
T PF10358_consen 79 KFSVFEVDG----SGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLS 135 (143)
T ss_pred EEEEEEecC----CCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEE
Confidence 888988743 11336999999999999874 556677888644 13346777777764
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.091 Score=48.70 Aligned_cols=58 Identities=14% Similarity=0.280 Sum_probs=42.8
Q ss_pred cchhhhHHHHHHHHhhHHHHHHhhccccccccchhHHHHHHHHHHHHHcchhHHHHHHH
Q 004208 560 RRGKANLARLMRFLNGFGVAWIWFDQVRRWKNPMTTTFVHVFYVIMVLFPQMILATFFF 618 (768)
Q Consensus 560 ~~~~~n~~rl~~~~~~~~~~~~~~~~i~~W~~p~~t~~~~~~~~~~v~~p~l~lp~~~l 618 (768)
+++..-..|++.+++-+-..+..++.+++|++|..|.++.++++++++- -+++|+-.+
T Consensus 62 drlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avv-ly~vP~r~l 119 (156)
T PF08372_consen 62 DRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVV-LYFVPFRVL 119 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH-HHHhhHHHH
Confidence 4566667788888888888889999999999999997777765554433 234666544
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.13 Score=49.16 Aligned_cols=103 Identities=16% Similarity=0.199 Sum_probs=68.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEE--EECCe----eeEeeeecCCCCCeeeeEEEEEe--ccC-CCceEEEEEEEcC
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEV--KIGNY----KGTTIPFEKKLNPEWNQVFAFTK--ERL-QAISVELLVKDKM 110 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v--~~~~~----~~~T~~~~~t~nP~Wne~f~f~~--~~~-~~~~L~i~V~d~~ 110 (768)
.++|+|+.+.+|... ....+-||.+ ..|++ ..+|+....+.++.|||.+.|++ .++ .+..|.|.||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 689999999999762 2335566665 44653 23566555567799999999985 343 3678999999975
Q ss_pred CC-----------------CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcc
Q 004208 111 IV-----------------NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGT 164 (768)
Q Consensus 111 ~~-----------------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~ 164 (768)
.. .+..||.+.+.|-+.. +.-..|...+.+|...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~--------------------~~Lr~G~~~L~lW~~~ 137 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK--------------------GQLKTGDHTLYMWTYA 137 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEccc--------------------chhhcCCeEEEecCCC
Confidence 42 1356777766666532 1113488888888653
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.34 Score=40.06 Aligned_cols=63 Identities=22% Similarity=0.236 Sum_probs=49.0
Q ss_pred CCcEEEEEECC-eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCceeEEEEEcCCCC
Q 004208 60 CDPYVEVKIGN-YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMPDI 127 (768)
Q Consensus 60 ~dPyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l 127 (768)
++-.+++++++ ...+|.-. ...+..||+.|.+.++. +..|+|.||=+|. ..+-|-.-+.|++.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdR--sRELEI~VywrD~--RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELER--SRELEIAVYWRDW--RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeecccc-ccccccccceeEEEeec--ccEEEEEEEEecc--hhhhhheeeEhhhh
Confidence 56789999998 56777654 34689999999999987 6789999987764 45666677777774
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.21 Score=46.94 Aligned_cols=107 Identities=19% Similarity=0.239 Sum_probs=72.0
Q ss_pred ccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEE--ECCee----eEeeeecCCCCCeeeeEEEEEe--ccC-CCceE
Q 004208 32 FDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVK--IGNYK----GTTIPFEKKLNPEWNQVFAFTK--ERL-QAISV 102 (768)
Q Consensus 32 ~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~--~~~~~----~~T~~~~~t~nP~Wne~f~f~~--~~~-~~~~L 102 (768)
+|+.+ .++|+|+++.++...+ .+|-||.+. .|++. .+|+.+. ..++.|||...|++ .++ .+..|
T Consensus 4 wd~~~---~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL 76 (158)
T cd08398 4 WKINS---NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARL 76 (158)
T ss_pred eeCCC---CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheE
Confidence 45543 5899999999987543 357787774 45532 2454444 37899999999985 343 36789
Q ss_pred EEEEEEcCCC-----CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEccc
Q 004208 103 ELLVKDKMIV-----NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQ 165 (768)
Q Consensus 103 ~i~V~d~~~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~~ 165 (768)
.|.||+.... ....+|.+.++|-+-... | .+|...+.+|..+.
T Consensus 77 ~iti~~~~~~~~~k~~~~~iG~~ni~LFd~~~~-------------L-------r~G~~~L~lW~~~~ 124 (158)
T cd08398 77 CLSICSVKGRKGAKEEHCPLAWGNINLFDYTDT-------------L-------VSGKMALNLWPVPH 124 (158)
T ss_pred EEEEEEEecccCCCCceEEEEEEEEEEECCCCh-------------h-------hCCCEEEEEEcCCc
Confidence 9999997642 224689988888763221 1 24888888887543
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.37 Score=45.39 Aligned_cols=87 Identities=22% Similarity=0.289 Sum_probs=59.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EeeecccCCCCCCcccceEEEEec---CCCCCcEEEEEEecc
Q 004208 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIF--GNVV----LKTTVSAKKTVNPTWNEDLMFVAA---EPFDDPLILTVEDKL 272 (768)
Q Consensus 202 L~V~v~~a~~L~~~d~~~~~dpyV~v~l--g~~~----~~T~~i~~~t~nP~wne~f~f~~~---~~~~~~L~i~V~d~d 272 (768)
++|.+....++... .....+-||++.+ |++. ..|+.... ..++.|||...|++. -+.+..|.|++|+.+
T Consensus 10 ~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 10 LRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred eEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 77888888877651 1234577777766 5542 23333332 368999999999853 235678999999976
Q ss_pred CCC--CCceeEEEEEecccc
Q 004208 273 GDN--KEECLGRLVLPLSKA 290 (768)
Q Consensus 273 ~~~--~d~~lG~~~i~l~~l 290 (768)
..+ .+..||.+.++|=+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 543 467999999988663
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.43 Score=44.99 Aligned_cols=89 Identities=19% Similarity=0.271 Sum_probs=60.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe--cCee----eeeccccCCCCCccccEEEEEEe--C-C-CcEEEEEEE
Q 004208 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKY--ANKW----VRTRTVVDSFDPKWNEQYTWEVY--D-P-YTVITLVVF 431 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--g~~~----~~T~~~~~t~nP~wne~~~~~v~--~-~-~~~l~v~v~ 431 (768)
.++|.|....++... .....+-|+.+.+ |++. ..|.....+.++.|||-++|++. + | .+.|.+++|
T Consensus 9 ~~~i~i~~~~~~~~~----~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~ 84 (156)
T cd08380 9 NLRIKIHGITNINLL----DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIY 84 (156)
T ss_pred CeEEEEEeecccccc----CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEE
Confidence 377888888887541 1234677777644 7653 24444443468999999999875 3 3 458999999
Q ss_pred eCCCCCCCCCCCCceEEEEEecccc
Q 004208 432 DNCHLHPGGAKDSRIGKVRIRLSTL 456 (768)
Q Consensus 432 d~~~~~~~~~~d~~lG~~~i~l~~l 456 (768)
+.+.-+ ...+..||.+.++|-+-
T Consensus 85 ~~~~~~--~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 85 AVSEPG--SKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EEecCC--CCcceEEEEEeEEeEcc
Confidence 976521 12467999999998864
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=93.97 E-value=1.5 Score=40.47 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=78.4
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee---eEeeeec-CCCCCeeeeEEEEEec--------cCCCceEEEE
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYK---GTTIPFE-KKLNPEWNQVFAFTKE--------RLQAISVELL 105 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~---~~T~~~~-~t~nP~Wne~f~f~~~--------~~~~~~L~i~ 105 (768)
...+.|+|.+..+++. ....-||+.+.++.. .+|.... .+-.-.|||.|.+.+. ..+...+.|.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 4568999999999976 223456666666543 4554432 2334789999999842 2456789999
Q ss_pred EEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcccC
Q 004208 106 VKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQA 166 (768)
Q Consensus 106 V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~~~ 166 (768)
|+..... +...+|.+.|+|+++..... .....-++|.... .....|.+++.+....
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~---~~~~~~~~l~~~~--~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDE---EPITVRLLLKKCK--KSNATLSISISLSELR 138 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCC---CcEEEEEeCccCC--CCCcEEEEEEEEEECc
Confidence 9988544 33699999999999876421 1123456666542 2447788877765433
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER) | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.0075 Score=57.86 Aligned_cols=61 Identities=15% Similarity=0.124 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHhHHhhhhhhheecccCCCccC
Q 004208 687 NGDLDSQLERLQSLIDWRDPRATAMFSIFCLMAAVVFYIVPLWILLLFAGPFVMRHPRFRI 747 (768)
Q Consensus 687 l~~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~~~v~~~vP~r~i~l~~g~~~~r~P~~r~ 747 (768)
...++..+..++.++.|+||..|..++++|++++.+..+++...++.++.+..+.=|.+..
T Consensus 90 ~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~ 150 (169)
T PF02453_consen 90 AEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYE 150 (169)
T ss_dssp CCCCCHHHHHHHCCCHCT-TTGGG-------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHH
Confidence 3345566888999999999999999999999999999888988777765555444455444
|
Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A. |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.42 Score=45.04 Aligned_cols=69 Identities=20% Similarity=0.286 Sum_probs=51.3
Q ss_pred CcCcEEEEEe--cCee----eeeccccCCCCCccccEEEEEEe--C-C-CcEEEEEEEeCCCCCCCCCCCCceEEEEEec
Q 004208 384 TTDAYCVAKY--ANKW----VRTRTVVDSFDPKWNEQYTWEVY--D-P-YTVITLVVFDNCHLHPGGAKDSRIGKVRIRL 453 (768)
Q Consensus 384 ~~dpyv~v~~--g~~~----~~T~~~~~t~nP~wne~~~~~v~--~-~-~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l 453 (768)
.+|-||.+.+ |++. ..|..+.-+..+.|||-+.|+|. + | ...|.|+|||.+. .++...||.+.++|
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~----~~~~~~vg~~~~~l 104 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG----TGKAVPFGGTTLSL 104 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecC----CCCceEEEEEEEee
Confidence 4788888755 6654 35655555667899999999886 3 3 4699999999875 22567999999998
Q ss_pred ccc
Q 004208 454 STL 456 (768)
Q Consensus 454 ~~l 456 (768)
-+-
T Consensus 105 Fd~ 107 (159)
T cd08397 105 FNK 107 (159)
T ss_pred ECC
Confidence 764
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.21 Score=50.56 Aligned_cols=97 Identities=13% Similarity=0.066 Sum_probs=70.0
Q ss_pred ccccccccEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCe-eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEE
Q 004208 32 FDLVEQMEFLYVRIVRARDLQVNQ--VTGTCDPYVEVKIGNY-KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKD 108 (768)
Q Consensus 32 ~~~~~~~~~L~V~i~~a~~L~~~d--~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d 108 (768)
.+++...|.|.++++.+++|+-.. .+-+.+-||++..+.+ +.+|.+.....--.|.|+|..++.+ ...+.+-||.
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvyS 121 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYS 121 (442)
T ss_pred eeeecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc--ceeeeEEEee
Confidence 455666899999999999997543 2446789999999874 6788777666777899999998765 3578888999
Q ss_pred cCCC-CCceeEEEEEcCCCCCCC
Q 004208 109 KMIV-NGDFIGKIKIDMPDIPKR 130 (768)
Q Consensus 109 ~~~~-~d~~lG~~~i~l~~l~~~ 130 (768)
++.- +.++.-..-+.+..+...
T Consensus 122 W~pq~RHKLC~~g~l~~~~v~rq 144 (442)
T KOG1452|consen 122 WPPQRRHKLCHLGLLEAFVVDRQ 144 (442)
T ss_pred cCchhhccccccchhhhhhhhhc
Confidence 8876 555433334444444433
|
|
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.91 Score=43.47 Aligned_cols=89 Identities=15% Similarity=0.163 Sum_probs=56.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEe--cCee---eeeccccCCCCCccccEEEEEEe--C-C-CcEEEEEEEeC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKY--ANKW---VRTRTVVDSFDPKWNEQYTWEVY--D-P-YTVITLVVFDN 433 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--g~~~---~~T~~~~~t~nP~wne~~~~~v~--~-~-~~~l~v~v~d~ 433 (768)
++|.|+++..+.. +......-||.+.+ |++. .+|....-+.++.|||-+.|++. | | ...|.|.||+.
T Consensus 12 friki~~~~~~~~----~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 12 FRVKILGIDIPVL----PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred EEEEEEeecccCc----CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEE
Confidence 7888888874432 22223445666533 6654 35665555678999999888876 4 3 45999999996
Q ss_pred CCCC------------CCCCCCCceEEEEEeccc
Q 004208 434 CHLH------------PGGAKDSRIGKVRIRLST 455 (768)
Q Consensus 434 ~~~~------------~~~~~d~~lG~~~i~l~~ 455 (768)
.... ..++.+..||.+.+.|-+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 88 KAPALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred ecCcccccccccccccccccccceEEEEEEEEEc
Confidence 3210 001236678888888776
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.46 Score=44.79 Aligned_cols=70 Identities=24% Similarity=0.316 Sum_probs=51.0
Q ss_pred CCCCcEEEEEE--CCeEE----eeecccCCCCCCcccceEEEEec---CCCCCcEEEEEEeccCCCCCceeEEEEEeccc
Q 004208 219 RNPEVFIKAIF--GNVVL----KTTVSAKKTVNPTWNEDLMFVAA---EPFDDPLILTVEDKLGDNKEECLGRLVLPLSK 289 (768)
Q Consensus 219 ~~~dpyV~v~l--g~~~~----~T~~i~~~t~nP~wne~f~f~~~---~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~ 289 (768)
..+|-||++.+ |++.. +|+...- +..+.|||-..|++. -+.+..|.|+||+.+..++...+|.++++|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f-~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPF-KNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCC-CCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 34678888766 55432 5554444 567899999999864 23567899999998765567799999998865
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.59 Score=44.79 Aligned_cols=90 Identities=22% Similarity=0.293 Sum_probs=62.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE----eeeccc---CCCCCCcccceEEEEec---CCCCCcEEEEE
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIF--GNVVL----KTTVSA---KKTVNPTWNEDLMFVAA---EPFDDPLILTV 268 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~l--g~~~~----~T~~i~---~~t~nP~wne~f~f~~~---~~~~~~L~i~V 268 (768)
.++|+|.++.+++........|-||++.+ |++.. .|+... .-...+.|||-..|.+. -+.+..|.|++
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 48899999999997765556788888866 65533 343221 11235779999998763 23567899999
Q ss_pred EeccCCC---------CCceeEEEEEecccc
Q 004208 269 EDKLGDN---------KEECLGRLVLPLSKA 290 (768)
Q Consensus 269 ~d~d~~~---------~d~~lG~~~i~l~~l 290 (768)
|+....+ .+..||.+.++|=+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9876543 356899998887663
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.04 E-value=1.1 Score=43.04 Aligned_cols=69 Identities=28% Similarity=0.288 Sum_probs=45.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE---eeecccCCCCCCcccceEEEEec---CCCCCcEEEEEEecc
Q 004208 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIF--GNVVL---KTTVSAKKTVNPTWNEDLMFVAA---EPFDDPLILTVEDKL 272 (768)
Q Consensus 202 L~V~v~~a~~L~~~d~~~~~dpyV~v~l--g~~~~---~T~~i~~~t~nP~wne~f~f~~~---~~~~~~L~i~V~d~d 272 (768)
++|.|.++.. +..+.......||++.+ |++.. +|+...- +.++.|||-+.|++. -+.+..|.|+||+..
T Consensus 12 friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 12 FRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred EEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCC-CCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 7888888863 33333333456777655 55432 5555554 667999999888863 235668999999863
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.58 Score=47.46 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=56.0
Q ss_pred CeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCC
Q 004208 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCH 435 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~ 435 (768)
...|.|.+++++++||.-... ..+-.-+-||++++..+ ..||++......-.|.|.|..++.+ .+++.+-||.|+.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~-~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQ-QKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccChh-ccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCc
Confidence 456889999999999976531 12336789999999764 5777777666777889999888765 3466777777664
|
|
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=90.84 E-value=1.9 Score=41.25 Aligned_cols=92 Identities=16% Similarity=0.258 Sum_probs=61.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe--cCeee----eecccc--C--CCCCccccEEEEEEe--C-C-CcEEE
Q 004208 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKY--ANKWV----RTRTVV--D--SFDPKWNEQYTWEVY--D-P-YTVIT 427 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--g~~~~----~T~~~~--~--t~nP~wne~~~~~v~--~-~-~~~l~ 427 (768)
.++|+|.++.+++.. ......|-|+.+.+ |++.. .|+... + ...+.|||-++|++. + | .+.|.
T Consensus 9 ~~~i~v~~~h~~~~~---~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 9 LLSVTVSSLHRIPPT---WVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred cEEEEEEEeecCChH---HhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 488999999999873 22235788888644 77653 444322 1 236779999888876 3 3 45899
Q ss_pred EEEEeCCCCCCC-----CCCCCceEEEEEecccc
Q 004208 428 LVVFDNCHLHPG-----GAKDSRIGKVRIRLSTL 456 (768)
Q Consensus 428 v~v~d~~~~~~~-----~~~d~~lG~~~i~l~~l 456 (768)
|++|+...-..+ ...+..||.+.++|-+-
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999997642100 01357999999998763
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=90.68 E-value=2.8 Score=38.72 Aligned_cols=75 Identities=15% Similarity=0.271 Sum_probs=51.6
Q ss_pred EeeeecCC-CCCeeeeEEEEEe--ccC-CCceEEEEEEEcCCC-CC----ceeEEEEEcCCCCCCCCCCCCCCCCeEEEc
Q 004208 74 TTIPFEKK-LNPEWNQVFAFTK--ERL-QAISVELLVKDKMIV-NG----DFIGKIKIDMPDIPKRVPPDSPLAPEWKRL 144 (768)
Q Consensus 74 ~T~~~~~t-~nP~Wne~f~f~~--~~~-~~~~L~i~V~d~~~~-~d----~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 144 (768)
.|+....+ .++.|||.+.|++ .++ ....|.|.||+.+.. .+ ..||.+.++|-+.... |
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~-------------L 89 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQ-------------L 89 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSB-------------B
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCc-------------c
Confidence 56655555 7999999999985 343 367899999998876 44 6999999998876321 1
Q ss_pred ccCCCCccceEEEEEEEEcccCCc
Q 004208 145 EAKDGSRARGELMFAIWFGTQADE 168 (768)
Q Consensus 145 ~~~~~~~~~G~i~l~i~~~~~~d~ 168 (768)
..|...+.+|-....+.
T Consensus 90 -------~~G~~~L~lW~~~~~~~ 106 (142)
T PF00792_consen 90 -------RQGPQKLSLWPDEEPDP 106 (142)
T ss_dssp -------EEEEEEEE-EET-TTSS
T ss_pred -------cCCCEEEEEEcCCCCcc
Confidence 34888899887665543
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=88.72 E-value=2.7 Score=38.78 Aligned_cols=66 Identities=23% Similarity=0.272 Sum_probs=44.3
Q ss_pred cEEEE--EecCee-----eeeccccCC-CCCccccEEEEEEe--C-C-CcEEEEEEEeCCCCCCCCCCC----CceEEEE
Q 004208 387 AYCVA--KYANKW-----VRTRTVVDS-FDPKWNEQYTWEVY--D-P-YTVITLVVFDNCHLHPGGAKD----SRIGKVR 450 (768)
Q Consensus 387 pyv~v--~~g~~~-----~~T~~~~~t-~nP~wne~~~~~v~--~-~-~~~l~v~v~d~~~~~~~~~~d----~~lG~~~ 450 (768)
.||.+ +.|++. ..|....-+ .++.|||.++|++. + | .+.|.|+||+.+.-. .+ ..||.+.
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~----~~~~~~~~lgw~n 79 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK----KSKKKKVPLGWVN 79 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST----TT--EEEEEEEEE
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC----ccccceeEEEEEE
Confidence 34443 446654 255555555 79999999999876 3 3 458999999876522 33 6899999
Q ss_pred Eecccc
Q 004208 451 IRLSTL 456 (768)
Q Consensus 451 i~l~~l 456 (768)
++|-+.
T Consensus 80 ~~lFd~ 85 (142)
T PF00792_consen 80 LPLFDY 85 (142)
T ss_dssp EESB-T
T ss_pred EEeECC
Confidence 998865
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=87.49 E-value=5.4 Score=38.63 Aligned_cols=40 Identities=13% Similarity=0.311 Sum_probs=33.1
Q ss_pred eeEeeeecCCCCCeeeeEEEEEe--ccCCCceEEEEEEEcCC
Q 004208 72 KGTTIPFEKKLNPEWNQVFAFTK--ERLQAISVELLVKDKMI 111 (768)
Q Consensus 72 ~~~T~~~~~t~nP~Wne~f~f~~--~~~~~~~L~i~V~d~~~ 111 (768)
..+|.+.....+|.|+|++.+.+ +......|.|++++...
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~ 95 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSS 95 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeecc
Confidence 56888888999999999999886 45567899999988754
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=86.68 E-value=4.1 Score=35.02 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=46.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE----eeecccCCCCCCcccceEEEEec---CCCCCcEEEEEEecc
Q 004208 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIF--GNVVL----KTTVSAKKTVNPTWNEDLMFVAA---EPFDDPLILTVEDKL 272 (768)
Q Consensus 202 L~V~v~~a~~L~~~d~~~~~dpyV~v~l--g~~~~----~T~~i~~~t~nP~wne~f~f~~~---~~~~~~L~i~V~d~d 272 (768)
+.+.+...++.........++-||++.+ |++.. .|+...- ...+.|||-..|++. -+.+..|.|++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~-~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPF-FPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCC-CCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566777777665443333588888866 65433 4544433 556899999999753 235678999999864
|
Outlier of C2 family. |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=86.61 E-value=5.9 Score=38.26 Aligned_cols=40 Identities=8% Similarity=0.267 Sum_probs=32.8
Q ss_pred eeEeeeecCCCCCeeeeEEEEEe--ccCCCceEEEEEEEcCC
Q 004208 72 KGTTIPFEKKLNPEWNQVFAFTK--ERLQAISVELLVKDKMI 111 (768)
Q Consensus 72 ~~~T~~~~~t~nP~Wne~f~f~~--~~~~~~~L~i~V~d~~~ 111 (768)
.++|.+...+.+|.|||++.+.+ +......|.|+.++...
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~ 95 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST 95 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee
Confidence 46888899999999999999886 44557889999988654
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=82.55 E-value=12 Score=31.33 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=48.2
Q ss_pred CCcCcEEEEEecCe-eeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCCCCCCceEEEEEecccc
Q 004208 383 GTTDAYCVAKYANK-WVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTL 456 (768)
Q Consensus 383 g~~dpyv~v~~g~~-~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l 456 (768)
|.++..|+++++|+ ..+|.-..- .+..|++.|.+.+. .+..|+|+||=.|- -.+-|-..+.|.+.
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~Ld-RsRELEI~VywrD~-------RslCav~~lrLEd~ 72 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELE-RSRELEIAVYWRDW-------RSLCAVKFLKLEDE 72 (98)
T ss_pred cccceEEEEEEcCeEEeecccccc-ccccccceeEEEee-cccEEEEEEEEecc-------hhhhhheeeEhhhh
Confidence 44678899999885 467766443 47889999999884 46789999987664 23667777888773
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.73 E-value=2.2 Score=50.00 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=79.0
Q ss_pred CcCcEEEEEecCe-eeeeccccCC-CCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCce
Q 004208 384 TTDAYCVAKYANK-WVRTRTVVDS-FDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRI 461 (768)
Q Consensus 384 ~~dpyv~v~~g~~-~~~T~~~~~t-~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~ 461 (768)
..++|+.+.+... ..+|....+. .+|.|.+.|......+...+.+.+-+.+..+ ....+|.+.++...+..+..
T Consensus 137 ~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G----~s~~w~~v~~s~~~~~~~~~ 212 (887)
T KOG1329|consen 137 TLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG----WSKRWGRVKISFLQYCSGHR 212 (887)
T ss_pred hccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc----ceeEEEEeccchhhhhcccc
Confidence 4789999999765 4788888877 6999999998888888889999999888754 57899999999999999888
Q ss_pred eeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 462 YTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 462 ~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
...|+++........++.-.+.+++.+.
T Consensus 213 ~~~~~~Il~~d~~~~~~~~~~~~~~~~~ 240 (887)
T KOG1329|consen 213 IGGWFPILDNDGKPHQKGSNESLRLGFT 240 (887)
T ss_pred ccceeeeeccCCccccCCcccceEEeeE
Confidence 8899999876543222222344444444
|
|
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=80.78 E-value=9.2 Score=32.87 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=47.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEE--ECCe----eeEeeeecCCCCCeeeeEEEEEec--cC-CCceEEEEEEEcCC
Q 004208 41 LYVRIVRARDLQVNQVTGTCDPYVEVK--IGNY----KGTTIPFEKKLNPEWNQVFAFTKE--RL-QAISVELLVKDKMI 111 (768)
Q Consensus 41 L~V~i~~a~~L~~~d~~g~~dPyv~v~--~~~~----~~~T~~~~~t~nP~Wne~f~f~~~--~~-~~~~L~i~V~d~~~ 111 (768)
+.+++....+.........++-||.+. .|++ ...|+.+.....+.|||...|++. ++ .+..|.|.||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 667777777776554333357787774 4553 235655555566999999999853 33 36789999998653
|
Outlier of C2 family. |
| >PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=80.54 E-value=4.4 Score=46.16 Aligned_cols=56 Identities=29% Similarity=0.480 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHhHHhhhhhhheecccCCCccC
Q 004208 689 DLDSQLERLQSLIDWRDPRATAMFSIFCLMAAVVFYIVPLWILLLFAGPFVMRHPRFRI 747 (768)
Q Consensus 689 ~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~~~v~~~vP~r~i~l~~g~~~~r~P~~r~ 747 (768)
.++.+..++.-|.+|++|+.|..|+++.+++.+.=+++|.-+.+|+..+ .+|+.|.
T Consensus 107 ~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~dll~p~~~~~L~~li---~~P~~r~ 162 (642)
T PF11696_consen 107 GLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLLDLLVPAFFAFLIALI---LSPPARS 162 (642)
T ss_pred HHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCccccc
Confidence 4556667778889999999999999999999888888998777766544 4466664
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 768 | ||||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 2e-07 | ||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 1e-05 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 1e-05 | ||
| 1rh8_A | 142 | Three-Dimensional Structure Of The Calcium-Free Pic | 4e-05 | ||
| 3jzy_A | 510 | Crystal Structure Of Human Intersectin 2 C2 Domain | 6e-05 | ||
| 3n5a_A | 138 | Synaptotagmin-7, C2b-Domain, Calcium Bound Length = | 7e-05 | ||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 8e-04 |
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
| >pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142 | Back alignment and structure |
|
| >pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 | Back alignment and structure |
|
| >pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138 | Back alignment and structure |
|
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-32
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 10/134 (7%)
Query: 29 TSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQ 88
+ S V+ + L V++++A DL +G DP+ +++GN + T K LNPEWN+
Sbjct: 3 SGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNK 62
Query: 89 VFAFTKERLQAISVELLVKDK-MIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAK 147
VF F + + +E+ V D+ DF+GK+ I + I P L+ K
Sbjct: 63 VFTFPIKDIHD-VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDG-------QPNCYVLKNK 114
Query: 148 DG-SRARGELMFAI 160
D +G + +
Sbjct: 115 DLEQAFKGVIYLEM 128
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 3e-19
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 10/129 (7%)
Query: 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEV 419
+G+L++ +L A +LL D G +D +C+ + N ++T TV + +P+WN+ +T+ +
Sbjct: 12 VGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 68
Query: 420 YDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKM 479
D + V+ + VFD G +GKV I L ++ + + Y L K
Sbjct: 69 KDIHDVLEVTVFD----EDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFK- 121
Query: 480 GEVQLAVRF 488
G + L +
Sbjct: 122 GVIYLEMDL 130
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 1e-15
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 14/131 (10%)
Query: 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPF 260
L+V V++A DL+ + + F GN L+T K +NP WN+ F +
Sbjct: 14 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHT-VYKNLNPEWNKVFTFPIKDI- 71
Query: 261 DDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVR 320
D L +TV D+ GD + LG++ +PL + Y L+ K
Sbjct: 72 HDVLEVTVFDEDGDKPPDFLGKVAIPLLS-----IR-DGQPNCYVLKNKDLEQAFKGV-- 123
Query: 321 FASRICLRFSL 331
I L L
Sbjct: 124 ----IYLEMDL 130
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 3e-28
Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 11/153 (7%)
Query: 19 GGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIP- 77
G E D E + VR++ L + G DPYV V + + +
Sbjct: 1 GMATCAVEVFGLLED-EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTS 59
Query: 78 -----FEKKLNPEWNQVFAFTKERLQAISVELLVKDK-MIVNGDFIGKIKIDMPDIPKRV 131
+K LNP+WN+ F Q + V D+ + DF+G++ + + +P
Sbjct: 60 VQTKTIKKSLNPKWNEEILFRVHPQQH-RLLFEVFDENRLTRDDFLGQVDVPLYPLPTEN 118
Query: 132 PPDS-PLAPEWKRLEAKDG-SRARGELMFAIWF 162
P P + L + SR +G L + +
Sbjct: 119 PRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTY 151
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 3e-12
Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 18/139 (12%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKW------VRTRTVVDSFDPKWNEQ 414
++ + +++ L D G +D Y + V+T+T+ S +PKWNE+
Sbjct: 20 RIVRVRVIAGIGLAKK---DILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEE 76
Query: 415 YTWEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLP- 473
+ V+ + VFD +D +G+V + L L T+
Sbjct: 77 ILFRVHPQQHRLLFEVFD----ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVL 132
Query: 474 ----NGVKKMGEVQLAVRF 488
+ + G ++L + +
Sbjct: 133 HPRSHKSRVKGYLRLKMTY 151
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 3e-12
Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 14/142 (9%)
Query: 191 SKVYVSPKLWYLRVNVIEAQDLVPKQRNRN--PEVFIK----AIFGNVVLKTTVSAKKTV 244
+ +RV VI L K P V + ++T KK++
Sbjct: 11 GLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKT-IKKSL 69
Query: 245 NPTWNEDLMFVAAEPFDDPLILTV--EDKLGDNKEECLGRLVLPLS--KAGKRFLPLPAA 300
NP WNE+++F P L+ V E++L + + LG++ +PL L P
Sbjct: 70 NPKWNEEILFR-VHPQQHRLLFEVFDENRLTRD--DFLGQVDVPLYPLPTENPRLERPYT 126
Query: 301 AIWYNLERNIANGEEKKDVRFA 322
+ L K +R
Sbjct: 127 FKDFVLHPRSHKSRVKGYLRLK 148
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 7e-28
Identities = 65/281 (23%), Positives = 106/281 (37%), Gaps = 51/281 (18%)
Query: 27 RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGT---TIPFEKKLN 83
R++ + + + L VRI++A DL G DPYV++ + + T K LN
Sbjct: 8 RISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLN 67
Query: 84 PEWNQVFAF--TKERLQAISVELLV--KDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAP 139
P +N+ F F L + V D+ + D IG++ +D PPD PL
Sbjct: 68 PIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRH-DLIGQVVLDNLLELAEQPPDRPL-- 124
Query: 140 EWKRLEAKDG-SRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVYVSPK 198
W+ + GEL F++ + P
Sbjct: 125 -WRDILEGGSEKADLGELNFSLCY---------------------------------LPT 150
Query: 199 LWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN----VVLKTTVSAKKTVNPTWNEDLMF 254
L V +I+A +L + ++KA + + + T K T+NPT+NE L+F
Sbjct: 151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 210
Query: 255 -VAAEPFDD-PLILTVEDKLGDNKEECLGRLVLPLSKAGKR 293
VA E ++ L + V D E +G + A
Sbjct: 211 DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH 251
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 1e-14
Identities = 52/268 (19%), Positives = 97/268 (36%), Gaps = 54/268 (20%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIF---GNVVLKTTVSAKKTVNPTWNEDLMF--VA 256
L V +++A DL K N + ++K +T V +KT+NP +NE F
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKV-HRKTLNPIFNETFQFSVPL 80
Query: 257 AEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEK 316
AE L +V D ++ + +G++VL + P +W ++ + +
Sbjct: 81 AELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLL--ELAEQPPDRPLWRDILEGGSEKADL 138
Query: 317 KDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVLELGILSAKELLPM 376
++ F+ L + P G+L + I+ A L M
Sbjct: 139 GELNFS----LCYL---------------------------PTAGLLTVTIIKASNLKAM 167
Query: 377 KSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYD---PYTVITL 428
D G +D Y A + K +T ++ +P +NE ++V +++
Sbjct: 168 ---DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSI 224
Query: 429 VVFDNCHLHPGGAKDSRIGKVRIRLSTL 456
V D + + IG R+
Sbjct: 225 AVVD----YDCIGHNEVIGVCRVGPEAA 248
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 3e-12
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPF 78
L S + L V I++A +L+ +TG DPYV+ + + K T
Sbjct: 137 DLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIK 196
Query: 79 EKKLNPEWNQVFAF--TKERLQAISVELLVKDKMIVNG-DFIGKIKID 123
+ LNP +N+ F E ++ + + + V D + + IG ++
Sbjct: 197 KNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVG 244
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 16/143 (11%)
Query: 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAK---YANKWVRTRTVVDSFDPKWNEQ 414
L + IL A +L D G +D Y K +T+ + +P +NE
Sbjct: 17 YGSDQLVVRILQALDLPAK---DSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNET 73
Query: 415 YTWEVYD---PYTVITLVVFDNCHLHPGGAKDSRIGKVRI--RLSTLETDRIYTHSYPLV 469
+ + V + V+D ++ IG+V + L E ++
Sbjct: 74 FQFSVPLAELAQRKLHFSVYD----FDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL 129
Query: 470 ALLPNGVKKMGEVQLAVRFTCSS 492
+GE+ ++ + ++
Sbjct: 130 EGGSEKA-DLGELNFSLCYLPTA 151
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-27
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
Query: 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERL 97
M L V + +A+ + YV +K+ N K TTI + P W Q F F RL
Sbjct: 4 MSLLCVGVKKAKFDGA---QEKFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRL 59
Query: 98 QAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR 151
+ + V +K ++ +G + I + I + + EW L+++
Sbjct: 60 DL-GLTVEVWNKGLIWDTMVGTVWIPLRTIRQS---NEEGPGEWLTLDSQAIMA 109
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 2e-08
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPF 260
L V V +A+ +++ N V +K NV K+T A + P+W +D MF
Sbjct: 6 LLCVGVKKAKFDGAQEK-FNTYVTLK--VQNV--KSTTIAVRGSQPSWEQDFMFEINRL- 59
Query: 261 DDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEK 316
D L + V +K G + +G + +PL + P W L+ + +
Sbjct: 60 DLGLTVEVWNK-GLIWDTMVGTVWIPLRTIRQSNEEGPGE--WLTLDSQAIMADSE 112
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 4e-04
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 359 VIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWE 418
V+ +L +G+ AK + Y K N T V S P W + + +E
Sbjct: 3 VMSLLCVGVKKAKFDGAQ------EKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFE 55
Query: 419 VYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTL 456
+ +T+ V++ + D+ +G V I L T+
Sbjct: 56 INRLDLGLTVEVWNKGLI-----WDTMVGTVWIPLRTI 88
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 67/302 (22%), Positives = 111/302 (36%), Gaps = 60/302 (19%)
Query: 27 RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGT---TIPFEKKLN 83
+L S D Q L V I++A +L + GT DPYV+V + K T K LN
Sbjct: 7 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 66
Query: 84 PEWNQVFAF--TKERLQAISVELLVKDK-MIVNGDFIGKIKIDMPDIPKRVPPDSPLAPE 140
P +N+ F F L ++ + V D D IG+ K+ M V E
Sbjct: 67 PVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPM----NTVDFGHVT-EE 121
Query: 141 WKRLEAKDGSRA--RGELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVYVSPK 198
W+ L++ + G++ F++ + A +
Sbjct: 122 WRDLQSAEKEEQEKLGDICFSLRYVPTAGK------------------------------ 151
Query: 199 LWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN----VVLKTTVSAKKTVNPTWNEDLMF 254
L V ++EA++L + ++K + K T K T+NP +NE F
Sbjct: 152 ---LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 208
Query: 255 -VAAEPFDD-PLILTVEDKLGDNKEECLGRLVLPLSKAGKRFL--------PLPAAAIWY 304
V E +++TV D K + +G++ + + G P A W+
Sbjct: 209 EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWH 268
Query: 305 NL 306
L
Sbjct: 269 TL 270
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 4e-14
Identities = 53/263 (20%), Positives = 91/263 (34%), Gaps = 55/263 (20%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIF---GNVVLKTTVSAKKTVNPTWNEDLMF--VA 256
L V +I+A +L + ++K +T V +KT+NP +NE F
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKV-HRKTLNPVFNEQFTFKVPY 79
Query: 257 AEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEK 316
+E L++ V D +K + +G +P++ E+
Sbjct: 80 SELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD---FGHVTEEWRDLQSAEKEEQEKL 136
Query: 317 KDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVLELGILSAKELLPM 376
D+ F+ R + P G L + IL AK L M
Sbjct: 137 GDICFSLR-------------------------------YVPTAGKLTVVILEAKNLKKM 165
Query: 377 KSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYD---PYTVITL 428
D G +D Y K +T ++ +P +NE +++EV + +
Sbjct: 166 ---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVV 222
Query: 429 VVFDNCHLHPGGAKDSRIGKVRI 451
V D + K+ IGKV +
Sbjct: 223 TVLD----YDKIGKNDAIGKVFV 241
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 2e-12
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 23 SGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIP 77
+ S V L V I+ A++L+ V G DPYV++ + K T
Sbjct: 134 EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI 193
Query: 78 FEKKLNPEWNQVFAF--TKERLQAISVELLVKDKMIVNG-DFIGKIKIDM 124
+ LNP +N+ F+F E++Q + V + V D + D IGK+ +
Sbjct: 194 KKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY 243
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 7e-07
Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAK---YANKWVRTRTVVDSFDPKWNEQYTW 417
L +GI+ A EL + D GT+D Y K T+ + +P +NEQ+T+
Sbjct: 19 NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 75
Query: 418 EVYD---PYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPN 474
+V + + V+D +K IG+ ++ ++T++ + L +
Sbjct: 76 KVPYSELAGKTLVMAVYD----FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKE 131
Query: 475 GVKKMGEVQLAVRFTCSS 492
+K+G++ ++R+ ++
Sbjct: 132 EQEKLGDICFSLRYVPTA 149
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 2e-26
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 6/103 (5%)
Query: 41 LYVRIVRARDLQVNQ---VTGTCDPYVEVKIG---NYKGTTIPFEKKLNPEWNQVFAFTK 94
V ++RA + + T DPYVE+ I + + T F +NP WN+ F F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 95 ERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPL 137
+ Q +E+ + D V + +G + + + P
Sbjct: 65 DPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPF 107
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 3e-17
Identities = 21/136 (15%), Positives = 47/136 (34%), Gaps = 17/136 (12%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKY---ANKWVRTRTVVDSFDPKWNEQYTW 417
+ +L A ++ D T D Y + RTR + +P WNE + +
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 418 EVYDPYT-VITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGV 476
+ V+ + + D ++ D +G +S+++ +
Sbjct: 63 ILDPNQENVLEITLMDANYV-----MDETLGTATFTVSSMKVGEKKEVPFIF-------- 109
Query: 477 KKMGEVQLAVRFTCSS 492
++ E+ L + +S
Sbjct: 110 NQVTEMVLEMSLEVAS 125
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 8e-09
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 12/97 (12%)
Query: 201 YLRVNVIEAQDLV---PKQRNRNPEVFIKAIFG---NVVLKTTVSAKKTVNPTWNEDLMF 254
V V+ A + P+ +++ + +T +NP WNE F
Sbjct: 4 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRH-FNNDINPVWNETFEF 62
Query: 255 VAAEPFDDPLILTV--EDKLGDNKEECLGRLVLPLSK 289
+ ++ L +T+ + + D E LG +S
Sbjct: 63 ILDPNQENVLEITLMDANYVMD---ETLGTATFTVSS 96
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 5e-26
Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 7/126 (5%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAI 100
L V + A ++ G DP V V + K T + +LNP WN++ F +
Sbjct: 9 LRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLD 67
Query: 101 ---SVELLVKDK-MIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGEL 156
S+ ++VKD I IG + + D+ P + L + G +
Sbjct: 68 FSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPY--KLISLLNEKGQDTGATI 125
Query: 157 MFAIWF 162
I +
Sbjct: 126 DLVIGY 131
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 5e-17
Identities = 27/135 (20%), Positives = 55/135 (40%), Gaps = 13/135 (9%)
Query: 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEV 419
G+L + + SA + K G D + ++ +T+ V + +P WNE +++
Sbjct: 6 SGMLRVIVESASNIPKTKF----GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDL 61
Query: 420 Y----DPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALL-PN 474
D + + ++V D ++ IG + L L D+ + Y L++LL
Sbjct: 62 RGIPLDFSSSLGIIVKD----FETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEK 117
Query: 475 GVKKMGEVQLAVRFT 489
G + L + +
Sbjct: 118 GQDTGATIDLVIGYD 132
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 3e-15
Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 13/132 (9%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEP-- 259
LRV V A ++ PK + P+ + IF + KT +NP WNE L F
Sbjct: 9 LRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKK-VDNELNPVWNEILEFDLRGIPL 66
Query: 260 -FDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKD 318
F L + V+D + + +G + L + ++ Y L +K
Sbjct: 67 DFSSSLGIIVKDFETIGQNKLIGTATVALKD----LTGDQSRSLPYKLISL----LNEKG 118
Query: 319 VRFASRICLRFS 330
+ I L
Sbjct: 119 QDTGATIDLVIG 130
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 6e-26
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 19/132 (14%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFT-KERLQA 99
+ + +V A+ LQ TG+ DPYV V++G K T LNP W + F F
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 100 ISVELLVKDKMIVNG----------DFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149
I V +L +D I + DF+G+ I++ + + W L+ +
Sbjct: 79 IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM-------DVWYNLDKRTD 131
Query: 150 -SRARGELMFAI 160
S G + I
Sbjct: 132 KSAVSGAIRLHI 143
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 2e-19
Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 13/146 (8%)
Query: 348 LRSTMKQLWPPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSF 407
++ ++ + + ++ A+ L D G++D Y + RT+T+ +
Sbjct: 4 VKQSVLDGTSKWSAKISITVVCAQGLQAK---DKTGSSDPYVTVQVGKTKKRTKTIYGNL 60
Query: 408 DPKWNEQYTWEVYDPYTVITLVVFD-------NCHLHPGGAKDSRIGKVRIRLSTLETDR 460
+P W E + +E ++ I + V D D +G+ I + TL +
Sbjct: 61 NPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE- 119
Query: 461 IYTHSYPLVALLPNGVKKMGEVQLAV 486
Y L G ++L +
Sbjct: 120 -MDVWYNLDKRTDKSAVS-GAIRLHI 143
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 8e-16
Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 31/158 (19%)
Query: 190 RSKVYVSPKLW--YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPT 247
+ V W + + V+ AQ L K + + + ++ G +T +NP
Sbjct: 5 KQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKT-IYGNLNPV 63
Query: 248 WNEDLMFVAAEPFDDPLILTVEDKLGDNKEEC-----------LGRLVLPLSKAGKRFLP 296
W E+ F D + + V D+ D K LG+ ++ +
Sbjct: 64 WEENFHFECHNS-SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE--- 119
Query: 297 LPAAAIWYNLERNIANGEEKKDVRFASR--ICLRFSLD 332
+WYNL +K+ + A I L S++
Sbjct: 120 ---MDVWYNL--------DKRTDKSAVSGAIRLHISVE 146
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 99.7 bits (248), Expect = 2e-24
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Query: 36 EQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKE 95
+ L V + +A+ + YV +K+ N + TTI + P W Q F F
Sbjct: 11 GILSLLCVGVKKAKFDGA---QEKFNTYVTLKVQNVESTTIAV-RGSQPSWEQDFMFEIN 66
Query: 96 RLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR 151
RL + + V +K ++ +G + I + I + + EW L+++
Sbjct: 67 RLDL-GLTVEVWNKGLIWDTMVGTVWIPLRTIRQS---NEEGPGEWLTLDSQAIMA 118
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 1e-07
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPF 260
L V V +A+ +++ N V +K NV ++T A + P+W +D MF
Sbjct: 15 LLCVGVKKAKFDGAQEKF-NTYVTLK--VQNV--ESTTIAVRGSQPSWEQDFMFEINRL- 68
Query: 261 DDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLER 308
D L + V +K G + +G + +PL + P W L+
Sbjct: 69 DLGLTVEVWNK-GLIWDTMVGTVWIPLRTIRQSNEEGPGE--WLTLDS 113
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 94.6 bits (235), Expect = 1e-22
Identities = 28/142 (19%), Positives = 59/142 (41%), Gaps = 10/142 (7%)
Query: 36 EQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIP------FEKKLNPEWNQV 89
+ + V+++ L + G DPYV V + + + +K LNP+WN+
Sbjct: 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEE 64
Query: 90 FAFT-KERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPD-SPLAPEWKRLEAK 147
F + I E+ ++++ + DF+G++ + + +P P P + L +
Sbjct: 65 ILFRVLPQRHRILFEVFDENRLTRD-DFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPR 123
Query: 148 DG-SRARGELMFAIWFGTQADE 168
SR +G L + + +
Sbjct: 124 SHKSRVKGYLRLKMTYLPKNGS 145
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 7e-14
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 18/146 (12%)
Query: 354 QLWPPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKW------VRTRTVVDSF 407
+L V+ + +++ L D G +D Y + V+T+T+ S
Sbjct: 1 ELHNDDTRVVRVKVIAGIGLAKK---DILGASDPYVRVTLYDPMSGILTSVQTKTIKKSL 57
Query: 408 DPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYP 467
+PKWNE+ + V I VFD L +D +G+V + L L T+
Sbjct: 58 NPKWNEEILFRVLPQRHRILFEVFDENRLT----RDDFLGQVDVPLYPLPTENPRMERPY 113
Query: 468 LVALLP-----NGVKKMGEVQLAVRF 488
+ + G ++L + +
Sbjct: 114 TFKDFVLHPRSHKSRVKGYLRLKMTY 139
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 1e-11
Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 20/167 (11%)
Query: 201 YLRVNVIEAQDLVPKQRNRN--PEVFIK----AIFGNVVLKTTVSAKKTVNPTWNEDLMF 254
+RV VI L K P V + ++T KK++NP WNE+++F
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKT-IKKSLNPKWNEEILF 67
Query: 255 VAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLS--KAGKRFLPLPAAAIWYNLERNIAN 312
P ++ V D+ +++ LG++ +PL + P + L
Sbjct: 68 R-VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVL------ 120
Query: 313 GEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPV 359
+ + + LR + Y + + + ++D ++ W +
Sbjct: 121 --HPRSHKSRVKGYLRLKMT--YLPKNGSEDENADQAEELEPGWVVL 163
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 2e-20
Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 9/124 (7%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKG-TTIPFEKKLNPEWNQVFAFTKERLQA 99
L V +V A+ L+ DPYV++ + + PEWN+ F FT
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 100 ISVELLVKDK-MIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMF 158
++ + DK + D +G+ I + V + + P + + +GE+
Sbjct: 72 -ELKAKIFDKDVGTEDDAVGEATIPLEP----VFVEGSIPPTAYNVVKDE--EYKGEIWV 124
Query: 159 AIWF 162
A+ F
Sbjct: 125 ALSF 128
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 4e-17
Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 11/131 (8%)
Query: 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVD-SFDPKWNEQYTWE 418
G LE+ ++SAK L + D D Y + ++ P+WNE + +
Sbjct: 9 HGTLEVVLVSAKGL---EDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFT 65
Query: 419 VYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKK 478
V + T + +FD G +D +G+ I L + + + ++ + K
Sbjct: 66 VSEGTTELKAKIFD----KDVGTEDDAVGEATIPLEPVFVEG--SIPPTAYNVVKDEEYK 119
Query: 479 MGEVQLAVRFT 489
GE+ +A+ F
Sbjct: 120 -GEIWVALSFK 129
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 2e-13
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFD 261
L V ++ A+ L N + +++ K+ V+ P WNE +F +E
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-T 70
Query: 262 DPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309
L + DK +++ +G +PL F+ YN+ ++
Sbjct: 71 TELKAKIFDKDVGTEDDAVGEATIPLEPV---FVEGSIPPTAYNVVKD 115
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 4e-19
Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 17/153 (11%)
Query: 20 GRVSGRERLT-----------SSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI 68
SGRE L S + L + ++ A+ + + PYVEV +
Sbjct: 6 HHSSGRENLYFQGMSDSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTV 65
Query: 69 GNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIP 128
T +P+W Q + + + + + +G +D+ +
Sbjct: 66 DGQSKKTEKCNNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSD-VLLGTAALDIYETL 124
Query: 129 KRVPPDSPLAPEWKRLE---AKDGSRARGELMF 158
K + L L+ K+ + G+L
Sbjct: 125 K--SNNMKLEEVVVTLQLGGDKEPTETIGDLSI 155
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 8e-15
Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 10/132 (7%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFD 261
L++ VI A+ K+ P +++ KT T +P W + L +
Sbjct: 38 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEK-CNNTNSPKWKQPLTVIVTP--V 94
Query: 262 DPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRF 321
L V + LG L + + + + G +K+
Sbjct: 95 SKLHFRVWSHQTLKSDVLLGTAALDIYE-----TLKSNNMKLEEVVVTLQLGGDKEPT-- 147
Query: 322 ASRICLRFSLDG 333
+ L LDG
Sbjct: 148 ETIGDLSICLDG 159
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 4e-14
Identities = 19/132 (14%), Positives = 49/132 (37%), Gaps = 12/132 (9%)
Query: 357 PPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYT 416
+ L++ ++SAK +++ Y + +T ++ PKW + T
Sbjct: 32 LTMKSQLQITVISAKLK---ENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLT 88
Query: 417 WEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLST-LETDRIYTHSYPLVALLPN- 474
V P + + V+ + L D +G + + L+++ + + L
Sbjct: 89 VIV-TPVSKLHFRVWSHQTLK----SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD 143
Query: 475 --GVKKMGEVQL 484
+ +G++ +
Sbjct: 144 KEPTETIGDLSI 155
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 89.6 bits (221), Expect = 1e-18
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 8/116 (6%)
Query: 34 LVEQMEF--LYVRIVRARDLQVNQ---VTGTCDPYVEVKIG---NYKGTTIPFEKKLNPE 85
+VE V ++RA + + T DPYVE+ I + + T F +NP
Sbjct: 11 IVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPV 70
Query: 86 WNQVFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEW 141
WN+ F F + Q +E+ + D V + +G + + + P
Sbjct: 71 WNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQ 126
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 56.9 bits (136), Expect = 2e-08
Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 9/111 (8%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAK---YANKWVRTRTVVDSFDPKWNEQYTW 417
+ +L A ++ D T D Y + RTR + +P WNE + +
Sbjct: 18 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77
Query: 418 EVYDPYT-VITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYP 467
+ V+ + + D ++ D +G +S+++ +
Sbjct: 78 ILDPNQENVLEITLMDANYV-----MDETLGTATFTVSSMKVGEKKEVPFI 123
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 46.1 bits (108), Expect = 4e-05
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 6/95 (6%)
Query: 200 WYLRVNVIEAQDLVPKQRN-----RNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMF 254
V V+ A + +P V + K T +NP WNE F
Sbjct: 18 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77
Query: 255 VAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSK 289
+ ++ L +T+ D +E LG +S
Sbjct: 78 ILDPNQENVLEITLMDANY-VMDETLGTATFTVSS 111
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 2e-16
Identities = 20/127 (15%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGN----YKGTTIPFEKKLNPEWNQVFAFTKER 96
+ + ++ A++L DP+ ++ + + T+ L+P+WNQ + +
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVK--NTLDPKWNQHYDLYVGK 64
Query: 97 LQAISVELLVKDKMIVN--GDFIGKIKIDMPDIPK-RVPPDSPLAPEWKRLEAKDGSRAR 153
+I++ + K+ F+G +++ I + + L + +L D R
Sbjct: 65 TDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRL--DLCKLNPSDTDAVR 122
Query: 154 GELMFAI 160
G+++ ++
Sbjct: 123 GQIVVSL 129
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 2e-13
Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 13/134 (9%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIK-AIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPF 260
+R+ V+ A++L K R P+ F K + G+ +T + K T++P WN+
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLY--VGK 64
Query: 261 DDPLILTV--EDKLGDNKEE-CLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKK 317
D + ++V K+ + LG + L + + + L+ N +
Sbjct: 65 TDSITISVWNHKKIHKKQGAGFLGCVRLLSNA-----ISRLKDTGYQRLDLCKLNPSDTD 119
Query: 318 DVRFASRICLRFSL 331
VR +I +
Sbjct: 120 AVR--GQIVVSLQT 131
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-09
Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 15/133 (11%)
Query: 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKW--VRTRTVVDSFDPKWNEQYTWEVY 420
+ L +L AK L D D + T TV ++ DPKWN+ Y V
Sbjct: 7 IRLTVLCAKNLAKK---DFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV- 62
Query: 421 DPYTVITLVVFDNCHLHPGGAKDSR--IGKVRIRLSTLETDRIYTHSYPLVALLPNGVKK 478
IT+ V+++ +H K +G VR+ + + + T L N
Sbjct: 63 GKTDSITISVWNHKKIHK---KQGAGFLGCVRLLSNAISRLK-DTGYQRLDLCKLNPSDT 118
Query: 479 M---GEVQLAVRF 488
G++ ++++
Sbjct: 119 DAVRGQIVVSLQT 131
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 4e-16
Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 16/117 (13%)
Query: 41 LYVRIVRARDLQ-----------VNQVTGTCDPYVEVKIGNYK-GTTIPFEKKLNPEWNQ 88
L ++I A L+ T DPY+ + + + + G T +K +P W+
Sbjct: 8 LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHD 67
Query: 89 VFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145
F + I + + + + DF+ I ++ + W LE
Sbjct: 68 EFVTDVCNGRKIELAVFHDAPIGYD-DFVANCTIQFEELLQNGSRHFED---WIDLE 120
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 2e-14
Identities = 27/143 (18%), Positives = 50/143 (34%), Gaps = 24/143 (16%)
Query: 361 GVLELGILSAKELLPM--------KSRDGRGTTDAYCVAKYAN-KWVRTRTVVDSFDPKW 411
G+L++ I A L P R D Y + + +T T + P W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 412 NEQYTWEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTL--ETDRIYTHSYPLV 469
++++ +V + I L VF + + D + I+ L R + L
Sbjct: 66 HDEFVTDVCNGRK-IELAVFHDAPIG----YDDFVANCTIQFEELLQNGSRHFEDWIDL- 119
Query: 470 ALLPNGVKKMGEVQLAVRFTCSS 492
+ G+V + + + SS
Sbjct: 120 -------EPEGKVYVIIDLSGSS 135
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 1e-11
Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 15/118 (12%)
Query: 201 YLRVNVIEAQDLVPKQRNRNPEV-----------FIKAIFGNVVLKTTVSAKKTVNPTWN 249
L++ + EA L P + V +I + + T + +KT +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 250 EDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLE 307
++ + + L V ++ + + + + W +LE
Sbjct: 67 DEFVTDVCNG--RKIELAVFHDAPIGYDDFVANCTIQFEELLQN--GSRHFEDWIDLE 120
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 2e-15
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 27/151 (17%)
Query: 18 GGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI--------- 68
++G +L ++D + L + I++AR+L G DP+V+V +
Sbjct: 1 ASHPITGEIQLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMV 56
Query: 69 -----GNYKGTTIPFEKKLNPEWNQVFAF---TKERLQAISVELLVKDK-MIVNGDFIGK 119
YK T +K LNPEWNQ + + E+L ++E+ V D + DF+G+
Sbjct: 57 VQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGE 116
Query: 120 IKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS 150
+ ID+ P W L+ + S
Sbjct: 117 VLIDLSSTSHLDN-----TPRWYPLKEQTES 142
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-10
Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 30/133 (22%)
Query: 198 KLWY----LRVNVIEAQDLVPKQRN--------------RNPEVFIKAIFGNVVLKTTVS 239
++ Y L +++++A++LVP+ N R + ++ +T
Sbjct: 12 QINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKY- 70
Query: 240 AKKTVNPTWNEDLMFVAAEPFDDP---LILTV--EDKLGDNKEECLGRLVLPLSKAGKRF 294
+K++NP WN+ +++ + L +TV D+ N + LG +++ LS
Sbjct: 71 VQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSN--DFLGEVLIDLSS----T 124
Query: 295 LPLPAAAIWYNLE 307
L WY L+
Sbjct: 125 SHLDNTPRWYPLK 137
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 8e-06
Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 25/126 (19%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYCV--------------AKYANKWVRTRTVVDS 406
G L + IL A+ L+P D G +D + A RT+ V S
Sbjct: 18 GNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS 74
Query: 407 FDPKWNEQYTWEVYDP----YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIY 462
+P+WN+ ++ + + V+D + + + +G+V I LS+
Sbjct: 75 LNPEWNQTVIYKSISMEQLMKKTLEVTVWD----YDRFSSNDFLGEVLIDLSSTSHLDNT 130
Query: 463 THSYPL 468
YPL
Sbjct: 131 PRWYPL 136
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 3e-15
Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 13/116 (11%)
Query: 41 LYVRIVRARDLQ----------VNQVTGTCDPYVEVKIGNYK-GTTIPFEKKLNPEWNQV 89
L VRI A LQ + DPY+ V + + G T +K P +N+
Sbjct: 31 LRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEE 90
Query: 90 FAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145
F + + + + + + F+ + ++ + S W LE
Sbjct: 91 FCANVTDGGHLELAVFHETPLGYD-HFVANCTLQFQELLRT-TGASDTFEGWVDLE 144
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 70.8 bits (173), Expect = 2e-14
Identities = 29/149 (19%), Positives = 48/149 (32%), Gaps = 17/149 (11%)
Query: 349 RSTMKQLWPPVIGVLELGILSAKELLPM-------KSRDGRGTTDAYCVAKYANKWV-RT 400
R +M G L + I A L P + G D Y V +T
Sbjct: 17 RGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQT 76
Query: 401 RTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDR 460
T + P +NE++ V D + L VF L D + ++ L
Sbjct: 77 STKQKTNKPTYNEEFCANVTDG-GHLELAVFHETPLG----YDHFVANCTLQFQELLRTT 131
Query: 461 IYTHSYPLVALLPNGVKKMGEVQLAVRFT 489
+ ++ L + G+V + + T
Sbjct: 132 GASDTFEGWVDL----EPEGKVFVVITLT 156
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 2e-13
Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 12/117 (10%)
Query: 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAI----------FGNVVLKTTVSAKKTVNPTWNE 250
YLRV + EA L P + + +F K V + T + +KT PT+NE
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89
Query: 251 DLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLE 307
+ + L L V + + + L + + W +LE
Sbjct: 90 EFCANVTDG--GHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE 144
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 6e-15
Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 19/146 (13%)
Query: 20 GRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYKGT 74
G G+ + FD + L V I+ A+DL + +PYV++ K
Sbjct: 4 GSSGGQLSIKLWFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRR 61
Query: 75 TIPFEKKLNPEWNQVFAF---TKERLQAISVELLVKDK---MIVNGDFIGKIKIDMPDIP 128
T +K L P+WNQ F + + + +E+ + D+ +F+G+I I++
Sbjct: 62 TKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA- 120
Query: 129 KRVPPDSPLAPEWKRLEAKDGSRARG 154
P W +L+ D + G
Sbjct: 121 -----LLDDEPHWYKLQTHDSGPSSG 141
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 4e-12
Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 22/126 (17%)
Query: 198 KLWY------LRVNVIEAQDLVPKQRNRNPEVFIKAIF-----GNVVLKTTVSAKKTVNP 246
KLW+ L V ++ A+DL ++ R ++K F +T KKT+ P
Sbjct: 13 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKT-VKKTLEP 71
Query: 247 TWNEDLMFVAAEPFDDP---LILTV--EDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAA 301
WN+ ++ + L +T+ + ++ + + E LG +++ L L
Sbjct: 72 KWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELET-----ALLDDEP 126
Query: 302 IWYNLE 307
WY L+
Sbjct: 127 HWYKLQ 132
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 17/118 (14%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYCV------AKYANKWVRTRTVVDSFDPKWNEQ 414
L + IL AK+L + + Y NK RT+TV + +PKWN+
Sbjct: 21 HQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKR-RTKTVKKTLEPKWNQT 76
Query: 415 YTWEVYDP----YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468
+ + ++ + ++D + + +G++ I L T D H Y L
Sbjct: 77 FIYSPVHRREFRERMLEITLWDQARVREE--ESEFLGEILIELETALLDDE-PHWYKL 131
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 5e-14
Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 20/147 (13%)
Query: 14 SPKIGGGRVSGRE-------RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEV 66
SP IGGG + +L S D Q L V I++A +L + GT DPYV+V
Sbjct: 2 SPGIGGGGGGILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKV 61
Query: 67 KIGNYKG----TTIPFEKKLNPEWNQVFAF--TKERLQAISVELLVKD-KMIVNGDFIGK 119
+ K T + K LNP +N+ F F L ++ + V D D IG+
Sbjct: 62 FLLPDKKKKFETKV-HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGE 120
Query: 120 IKIDMPDIPKRVPPDSPLAPEWKRLEA 146
K+ M V EW+ L++
Sbjct: 121 FKVPM----NTVDFGHVT-EEWRDLQS 142
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 8e-09
Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 30/128 (23%)
Query: 198 KLWY------LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVL--------KTTVSAKKT 243
L Y L V +I+A +L + ++K V L +T V +KT
Sbjct: 26 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVK-----VFLLPDKKKKFETKV-HRKT 79
Query: 244 VNPTWNEDLMFV--AAEPFDDPLILTV--EDKLGDNKEECLGRLVLPLSKAGKRFLPLPA 299
+NP +NE F +E L++ V D+ + + +G +P++
Sbjct: 80 LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKH--DIIGEFKVPMNT----VDFGHV 133
Query: 300 AAIWYNLE 307
W +L+
Sbjct: 134 TEEWRDLQ 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 13/114 (11%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAK---YANKWVRTRTVVDSFDPKWNEQYTW 417
L +GI+ A EL + D GT+D Y K T+ + +P +NEQ+T+
Sbjct: 34 NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 90
Query: 418 EVYD---PYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468
+V + + V+D +K IG+ ++ ++T++ + L
Sbjct: 91 KVPYSELGGKTLVMAVYD----FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 7e-14
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 16/141 (11%)
Query: 18 GGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI----GNYKG 73
G GR + + ++ Q L V+I++A++L +GT DP+V++ + +
Sbjct: 7 GSRENLGRIQFSVGYN--FQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLE 64
Query: 74 TTIPFEKKLNPEWNQVFAF---TKERLQAISVELLVKD-KMIVNGDFIGKIKIDMPDIPK 129
T + K LNP WN+ F F E++ + L V D D IG++ I + +
Sbjct: 65 TKV-KRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL 123
Query: 130 RVPPDSPLAPEWKRLEAKDGS 150
+ + WK L+ S
Sbjct: 124 -----TQMQTFWKDLKPSGPS 139
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-10
Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 31/129 (24%)
Query: 198 KLWY------LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVL--------KTTVSAKKT 243
+ Y L V +++AQ+L K + + F+K + L +T V +K
Sbjct: 18 SVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVK-----IYLLPDKKHKLETKV-KRKN 71
Query: 244 VNPTWNEDLMF---VAAEPFDDPLILTV--EDKLGDNKEECLGRLVLPLSKAGKRFLPLP 298
+NP WNE +F + L L V D+ N + +G + +PL+K
Sbjct: 72 LNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRN--DPIGEVSIPLNK----VDLTQ 125
Query: 299 AAAIWYNLE 307
W +L+
Sbjct: 126 MQTFWKDLK 134
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 4e-07
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 14/115 (12%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKY---ANKWVRTRTVVDSFDPKWNEQYTW 417
L + I+ A+EL D GT+D + + T+ + +P WNE + +
Sbjct: 26 STLTVKIMKAQELPAK---DFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 82
Query: 418 EVYDP----YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468
E + ++ L V D + +++ IG+V I L+ ++ ++ T L
Sbjct: 83 EGFPYEKVVQRILYLQVLD----YDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDL 133
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 7e-14
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 19/135 (14%)
Query: 22 VSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYKGTTI 76
+SG+ + FD + L V I+ A+DL + +PYV++ K T
Sbjct: 3 LSGQLSIKLWFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTK 60
Query: 77 PFEKKLNPEWNQVFAF---TKERLQAISVELLVKD-KMIVNG--DFIGKIKIDMPDIPKR 130
+K L P+WNQ F + + + +E+ + D + +F+G+I I++
Sbjct: 61 TVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA--- 117
Query: 131 VPPDSPLAPEWKRLE 145
P W +L+
Sbjct: 118 ---LLDDEPHWYKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 5e-13
Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 22/126 (17%)
Query: 198 KLWY------LRVNVIEAQDLVPKQRNRNPEVFIKAIF-----GNVVLKTTVSAKKTVNP 246
KLW+ L V ++ A+DL ++ R ++K F +T KKT+ P
Sbjct: 10 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKT-VKKTLEP 68
Query: 247 TWNEDLMFVAAEPFDDP---LILTV--EDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAA 301
WN+ ++ + L +T+ + ++ + + E LG +++ L L
Sbjct: 69 KWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELET-----ALLDDEP 123
Query: 302 IWYNLE 307
WY L+
Sbjct: 124 HWYKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 6e-05
Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 15/117 (12%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVA-----KYANKWVRTRTVVDSFDPKWNEQY 415
L + IL AK+L + + Y + RT+TV + +PKWN+ +
Sbjct: 18 HQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 74
Query: 416 TWEVYDP----YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468
+ ++ + ++D + + +G++ I L T D H Y L
Sbjct: 75 IYSPVHRREFRERMLEITLWDQARVREE--ESEFLGEILIELETALLDDE-PHWYKL 128
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-13
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 13/129 (10%)
Query: 27 RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKG----TTIPFEKKL 82
+L S D Q L V I++A +L + GT DPYV+V + K T + K L
Sbjct: 30 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKV-HRKTL 88
Query: 83 NPEWNQVFAF--TKERLQAISVELLVKD-KMIVNGDFIGKIKIDMPDIPKRVPPDSPLAP 139
NP +N+ F F L ++ + V D D IG+ K+ M V
Sbjct: 89 NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM----NTVDFGHVT-E 143
Query: 140 EWKRLEAKD 148
EW+ L++ +
Sbjct: 144 EWRDLQSAE 152
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 8e-09
Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 30/128 (23%)
Query: 198 KLWY------LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVL--------KTTVSAKKT 243
L Y L V +I+A +L + ++K V L +T V +KT
Sbjct: 34 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVK-----VFLLPDKKKKFETKV-HRKT 87
Query: 244 VNPTWNEDLMFV--AAEPFDDPLILTV--EDKLGDNKEECLGRLVLPLSKAGKRFLPLPA 299
+NP +NE F +E L++ V D+ + + +G +P++
Sbjct: 88 LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKH--DIIGEFKVPMNT----VDFGHV 141
Query: 300 AAIWYNLE 307
W +L+
Sbjct: 142 TEEWRDLQ 149
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-07
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 13/114 (11%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAK---YANKWVRTRTVVDSFDPKWNEQYTW 417
L +GI+ A EL + D GT+D Y K T+ + +P +NEQ+T+
Sbjct: 42 NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 98
Query: 418 EVYD---PYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468
+V + + V+D +K IG+ ++ ++T++ + L
Sbjct: 99 KVPYSELGGKTLVMAVYD----FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 148
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 4e-13
Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 20/150 (13%)
Query: 17 IGGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQV-NQVTGTCDPYVEV-------KI 68
+G V+GR + ++ +Q + L V + L ++ +PYV+ +
Sbjct: 3 LGNIFVTGRIAFSLKYE--QQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQ 60
Query: 69 GNYKGTTIPFEKKLNPEWNQVFAF--TKERLQAISVELLVKD-KMIVNGDFIGKIKIDMP 125
G K + +NP +++ + + L +++ V F+G+ +I M
Sbjct: 61 GKRKTSIK--RDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQM- 117
Query: 126 DIPKRVPPDSPLAPEWKRLEAKDGSRARGE 155
D L L K + + G
Sbjct: 118 ---DSWKLDKKL-DHCLPLHGKISAESEGH 143
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 29/143 (20%), Positives = 45/143 (31%), Gaps = 41/143 (28%)
Query: 198 KLWY------LRVNVIEAQDLVPKQRNR---NPEVFIKAIFGNVVL----------KTTV 238
L Y L V+V E L + NP ++K L KT++
Sbjct: 15 SLKYEQQTQSLVVHVKECHQLAYADEAKKRSNP--YVK-----TYLLPDKSRQGKRKTSI 67
Query: 239 SAKKTVNPTWNEDLMFVAAEPFDDP----LILTV--EDKLGDNKEECLGRLVLPLSKAGK 292
+ TVNP ++E L + P L +V + G N LG + +
Sbjct: 68 -KRDTVNPLYDETLRY--EIPESLLAQRTLQFSVWHHGRFGRN--TFLGEAEIQMDS--- 119
Query: 293 RFLPLPAAAIWYNLERNIANGEE 315
+ L I+ E
Sbjct: 120 -WKLDKKLDHCLPLHGKISAESE 141
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 6e-05
Identities = 17/120 (14%), Positives = 48/120 (40%), Gaps = 22/120 (18%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYC-------VAKYANKWVRTRTVVDSFDPKWNE 413
L + + +L + + ++ Y ++ + +T D+ +P ++E
Sbjct: 23 QSLVVHVKECHQLAYAD--EAKKRSNPYVKTYLLPDKSRQGKR--KTSIKRDTVNPLYDE 78
Query: 414 QYTWEVYDPYTVIT-----LVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468
+E+ P +++ V+ H +++ +G+ I++ + + D+ H PL
Sbjct: 79 TLRYEI--PESLLAQRTLQFSVWH----HGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPL 132
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 4e-13
Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 14 SPKIGGGR---VSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEV---- 66
SP I GG SGR L S L V +++AR L + V+G DPYV+V
Sbjct: 2 SPGISGGGGGIPSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYH 61
Query: 67 ---KIGNYKGTTIPFEKKLNPEWNQVFAF--TKERLQAISVELLVKDKMIVNG-DFIGKI 120
+I K N +N++F F E L+ ISVE LV D + + IG++
Sbjct: 62 AKKRISKKKTHVKK--CTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRL 119
Query: 121 KID 123
+
Sbjct: 120 VLG 122
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 4e-10
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 18/105 (17%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVL----------KTTVSAKKTVNPTWNED 251
L V V++A+ L + + ++K V L KT V K T N +NE
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVK-----VNLYHAKKRISKKKTHV-KKCTPNAVFNEL 85
Query: 252 LMF-VAAEPFDDP-LILTVEDKLGDNKEECLGRLVLPLSKAGKRF 294
+F + E ++ + V D ++ E +GRLVL + G
Sbjct: 86 FVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGG 130
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 8e-13
Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 21/124 (16%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEV-------KIGNYKGTTIPFEKKLNPEWNQVFAF- 92
+ V I++AR+L+ + GT DPYV+V ++ K T + LNP +N+ FAF
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKK--RNLNPIFNESFAFD 75
Query: 93 -TKERLQAISVELLVKDK-MIVNGDFIGKIKIDMPDIPKRVP--------PDSPLAPEWK 142
E+L+ ++ + V DK + D IGKI + P V P P+A +W
Sbjct: 76 IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVA-QWH 134
Query: 143 RLEA 146
+L+A
Sbjct: 135 QLKA 138
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-10
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 26/126 (20%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVL----------KTTVSAKKTVNPTWNED 251
+ VN+I+A++L + ++K V L KT K+ +NP +NE
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVK-----VWLMYKDKRVEKKKTVT-KKRNLNPIFNES 71
Query: 252 LMF-VAAEPFDDP-LILTVEDKLGDNKEECLGRLVLPLSKAGKRFL--------PLPAAA 301
F + E + +I+TV DK ++ + +G++ L P A
Sbjct: 72 FAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVA 131
Query: 302 IWYNLE 307
W+ L+
Sbjct: 132 QWHQLK 137
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 9e-13
Identities = 19/144 (13%), Positives = 46/144 (31%), Gaps = 15/144 (10%)
Query: 11 KETSPKIGGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI-- 68
+ + G R+ + E+ + + I++ +L + V +
Sbjct: 15 EAAAFDSDESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLP 74
Query: 69 ----GNYKGTTIPFEKKLNPEWNQVFAF--TKERLQAISVELLV--KDKMIVNGDFIGKI 120
T P + +N+VF + L ++ + V D+ + + +G
Sbjct: 75 CSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLE-ECLGGA 133
Query: 121 KIDMPDIPKRVPPDSPLAPEWKRL 144
+I + + V + W L
Sbjct: 134 QISLAE----VCRSGERSTRWYNL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 8e-10
Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 22/125 (17%)
Query: 198 KLWY------LRVNVIEAQDLVPKQRNRNPEVFIKAIF------GNVVLKTTVSAKKTVN 245
L Y + +I+ +L + ++ +V I+ + +T +
Sbjct: 35 ALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPL-DASDT 93
Query: 246 PTWNEDLMF-VAAEPFDD-PLILTV--EDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAA 301
+NE ++ L + V D+ EECLG + L++ +
Sbjct: 94 LVFNEVFWVSMSYPALHQKTLRVDVCTTDRSH--LEECLGGAQISLAEVC---RSGERST 148
Query: 302 IWYNL 306
WYNL
Sbjct: 149 RWYNL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 21/122 (17%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYC------VAKYANKWVRTRTVVDSFDPKWNEQ 414
+ I+ L + + ++ RTR + S +NE
Sbjct: 43 KQFAILIIQLSNLSAL---LQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEV 99
Query: 415 YTWEVYDPYTVI---TLV--VFDNCHLHPGGAKDSRIGKVRIRLSTLE-TDRIYTHSYPL 468
+ + Y + TL V H + +G +I L+ + + T Y L
Sbjct: 100 FWVSM--SYPALHQKTLRVDVCTTDRSH----LEECLGGAQISLAEVCRSGERSTRWYNL 153
Query: 469 VA 470
++
Sbjct: 154 LS 155
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-12
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 15/142 (10%)
Query: 18 GGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYK 72
+V G +L S D Q L + I+ + L Q GTCDPYV++ +
Sbjct: 8 HSHKVQGAGQLRLSID--AQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRH 64
Query: 73 GTTIPFEKKLNPEWNQVFAFT-KERLQAISVELLVKDKMIVNG--DFIGKIKIDMPDIPK 129
T +P +++ F F +E + + V ++ + IG + + +
Sbjct: 65 QKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLT 124
Query: 130 RVPPDSPLAPEWKRLEAKDGSR 151
PD ++ W L + R
Sbjct: 125 ---PDKEIS-GWYYLLGEHLGR 142
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-09
Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 14/141 (9%)
Query: 192 KVYVSPKLWYLRVNVIEAQDLVPKQRNR-NPEVFIKAIFG---NVVLKTTVSAKKTVNPT 247
++ + + L +++IE + L+ KQ +P V I I KT +P
Sbjct: 19 RLSIDAQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQT-VPDCRDPA 77
Query: 248 WNEDLMF-VAAEPFDDPLILTV--EDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWY 304
++E F V E L++TV +G + + P + WY
Sbjct: 78 FHEHFFFPVQEEDDQKRLLVTVWNRASQSRQS-GLIGCMSFGVKSL---LTPDKEISGWY 133
Query: 305 NLERNIANGEEKKDVRFASRI 325
L + K ++ A R
Sbjct: 134 YLLG--EHLGRTKHLKVARRR 152
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 9e-05
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 19/118 (16%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYC-------VAKYANKWVRTRTVVDSFDPKWNE 413
VL L I+ K L+ + GT D Y ++ ++ +T+TV D DP ++E
Sbjct: 27 RVLLLHIIEGKGLISKQP----GTCDPYVKISLIPEDSRLRHQ--KTQTVPDCRDPAFHE 80
Query: 414 QYTWEV--YDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLET-DRIYTHSYPL 468
+ + V D + + V++ + IG + + +L T D+ + Y L
Sbjct: 81 HFFFPVQEEDDQKRLLVTVWNRASQ---SRQSGLIGCMSFGVKSLLTPDKEISGWYYL 135
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 1e-12
Identities = 22/143 (15%), Positives = 51/143 (35%), Gaps = 17/143 (11%)
Query: 13 TSPKIGGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI---- 68
+S G + + +D Q L+V + A + G CD YV+ +
Sbjct: 2 SSGSSGSWNQAPKLHYCLDYD--CQKAELFVTRLEAVTSNHD---GGCDCYVQGSVANRT 56
Query: 69 GNYKGTTIPFEKKLNPEWNQVFAF--TKERLQAISVELLVKD-KMIVNGDFIGKIKIDMP 125
G+ + T +++L+ W + +E L ++ L ++ G++++ +
Sbjct: 57 GSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLD 116
Query: 126 DIPKRVPPDSPLAPEWKRLEAKD 148
+ +W L+
Sbjct: 117 GTSVPLGAA-----QWGELKTSG 134
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 7e-07
Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 20/122 (16%)
Query: 198 KLWY------LRVNVIEAQDLVPKQRNRNPEVFIKAI--FGNVVLKTTVSAKKTVNPTWN 249
L Y L V +EA + V G+V +T + K+ ++ TW
Sbjct: 18 CLDYDCQKAELFVTRLEAVTSNHDGGC-DCYVQGSVANRTGSVEAQTAL-KKRQLHTTWE 75
Query: 250 EDLMF-VAAEPFDDP-LILTV--EDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYN 305
E L+ +A E L LT+ D+ + G L L L AA W
Sbjct: 76 EGLVLPLAEEELPTATLTLTLRTCDRFSRH--SVAGELRLGLDGTSVP----LGAAQWGE 129
Query: 306 LE 307
L+
Sbjct: 130 LK 131
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 1e-12
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 17/117 (14%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEV-------KIGNYKGTTIPFEKKLNPEWNQVFAFT 93
L V + A++L G DPYV++ K TI LNPEWN+ F F
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK--CSLNPEWNETFRFQ 90
Query: 94 -KERLQAISVELLVKDKMIVNG-DFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148
KE + + + + D + + DF+G + + ++ K W +L +++
Sbjct: 91 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV------DGWFKLLSQE 141
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-11
Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 24/123 (19%)
Query: 198 KLWY----LRVNVIEAQDLVPKQRN--RNPEVFIKAIF-----GNVVLKTTVSAKKTVNP 246
+ L V V +A++LVP N +P ++K KT K ++NP
Sbjct: 25 QAHIDREVLIVVVRDAKNLVPMDPNGLSDP--YVKLKLIPDPKSESKQKTKT-IKCSLNP 81
Query: 247 TWNEDLMF-VAAEPFDDPLILTV--EDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIW 303
WNE F + D L + + D N + +G L +S+ L W
Sbjct: 82 EWNETFRFQLKESDKDRRLSVEIWDWDLTSRN--DFMGSLSFGISE-----LQKAGVDGW 134
Query: 304 YNL 306
+ L
Sbjct: 135 FKL 137
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 1e-09
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYCV------AKYANKWVRTRTVVDSFDPKWNEQ 414
VL + + AK L+PM D G +D Y K +K +T+T+ S +P+WNE
Sbjct: 31 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQ-KTKTIKCSLNPEWNET 86
Query: 415 YTWEVY--DPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468
+ +++ D +++ ++D +++ +G + +S L+ + + L
Sbjct: 87 FRFQLKESDKDRRLSVEIWD----WDLTSRNDFMGSLSFGISELQKAGV-DGWFKL 137
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 1e-12
Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 18/130 (13%)
Query: 27 RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEV-------KIGNYKGTTIPFE 79
L S + L I+RA+ L+ G DPYV++ K + T+
Sbjct: 17 ALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLR-- 74
Query: 80 KKLNPEWNQVFAF---TKERLQAISVELLVKDK-MIVNGDFIGKIKIDMPDIPKRVPPDS 135
NP WN+ + T+E +Q ++ + V D+ + +FIG+ + + + +
Sbjct: 75 NTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKN- 133
Query: 136 PLAPEWKRLE 145
LE
Sbjct: 134 ----FNICLE 139
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-09
Identities = 36/129 (27%), Positives = 48/129 (37%), Gaps = 23/129 (17%)
Query: 198 KLWY------LRVNVIEAQDLVPKQRN--RNPEVFIKAIFGNV---VLKTTVSAKKTVNP 246
L Y L+ +I A+ L P N +P V + + G L+T + T NP
Sbjct: 21 SLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKT-LRNTRNP 79
Query: 247 TWNEDLMFVAAEPFDDP---LILTV--EDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAA 301
WNE L + D L ++V EDK G N E +G L K
Sbjct: 80 VWNETLQYHGITEEDMQRKTLRISVCDEDKFGHN--EFIGETRFSLKK----LKANQRKN 133
Query: 302 IWYNLERNI 310
LER I
Sbjct: 134 FNICLERVI 142
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 18/118 (15%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYCV------AKYANKWVRTRTVVDSFDPKWNEQ 414
L+ I+ AK L PM D G D Y A +NK RT+T+ ++ +P WNE
Sbjct: 29 SNLQCTIIRAKGLKPM---DSNGLADPYVKLHLLPGASKSNKL-RTKTLRNTRNPVWNET 84
Query: 415 YTWEVYDP----YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468
+ + + V D + IG+ R L L+ ++ + L
Sbjct: 85 LQYHGITEEDMQRKTLRISVCD----EDKFGHNEFIGETRFSLKKLKANQRKNFNICL 138
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 2e-12
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 8/115 (6%)
Query: 18 GGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YK 72
GGG + + S V L V I+ A++L+ V G DPYV++ + K
Sbjct: 4 GGGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKK 63
Query: 73 GTTIPFEKKLNPEWNQVFAF--TKERLQAISVELLVKDK-MIVNGDFIGKIKIDM 124
T + LNP +N+ F+F E++Q + V + V D I D IGK+ +
Sbjct: 64 KKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY 118
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 3e-10
Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 14/120 (11%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIF----GNVVLKTTVSAKKTVNPTWNEDLMF-VA 256
L V ++EA++L + ++K + K T K T+NP +NE F V
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86
Query: 257 AEPFDDP-LILTVEDKLGDNKEECLGRLVLPLSKAGKRFL--------PLPAAAIWYNLE 307
E +++TV D K + +G++ + + G P A W+ L+
Sbjct: 87 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ 146
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 5e-12
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 21/125 (16%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEV-------KIGNYKGTTIPFEKKLNPEWNQVFAF- 92
L V I+R L G DP+V++ K +K K LNPE+N+ F +
Sbjct: 39 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK--KTLNPEFNEEFFYD 96
Query: 93 -TKERLQAISVELLVKDKMIVNG-DFIGKIKIDMPDIPKRVP--------PDSPLAPEWK 142
L S+++ V D I D+IG ++ + +R+ D + W
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE-RWH 155
Query: 143 RLEAK 147
+L+ +
Sbjct: 156 QLQNE 160
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 4e-10
Identities = 30/130 (23%), Positives = 47/130 (36%), Gaps = 30/130 (23%)
Query: 198 KLWY------LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVL----------KTTVSAK 241
L Y L V +I L N + F+K + L KT + K
Sbjct: 29 SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVK-----LWLKPDMGKKAKHKTQI-KK 82
Query: 242 KTVNPTWNEDLMF-VAAEPFDD-PLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPA 299
KT+NP +NE+ + + L ++V D + +G L +S G+R
Sbjct: 83 KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERL----- 137
Query: 300 AAIWYNLERN 309
WY +N
Sbjct: 138 -KHWYECLKN 146
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 3e-11
Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 19/127 (14%)
Query: 32 FDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEV-------KIGNYKGTTIPFEKKLNP 84
+ + L++ ++ +DL +PYV+ K K K NP
Sbjct: 13 LSVSYRNGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISR--KTRNP 69
Query: 85 EWNQVFAF---TKERLQAISVELLVKD-KMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPE 140
+N++ + +KE L+ ++L V + + F+G I + + K +
Sbjct: 70 TFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPL----KDFNLSKET-VK 124
Query: 141 WKRLEAK 147
W +L A
Sbjct: 125 WYQLTAA 131
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 7e-07
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 22/124 (17%)
Query: 198 KLWY----LRVNVIEAQDLVPKQRNR-NPEVFIKAIFGNVV---LKTTVSAKKTVNPTWN 249
+ Y L + V+ +DLV + NP V + KT + ++KT NPT+N
Sbjct: 14 SVSYRNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKI-SRKTRNPTFN 72
Query: 250 EDLMFVAAEPFDDP---LILTV--EDKLGDNKEECLGRLVLPLSKAGKRFLPLPA-AAIW 303
E L++ L L+V + L +N LG + LPL L W
Sbjct: 73 EMLVYSGYSKETLRQRELQLSVLSAESLREN--FFLGGITLPLKD-----FNLSKETVKW 125
Query: 304 YNLE 307
Y L
Sbjct: 126 YQLT 129
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 21/119 (17%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYCV------AKYANKWVRTRTVVDSFDPKWNEQ 414
G L + ++ K+L+ + Y +K +T+ + +P +NE
Sbjct: 20 GTLFIMVMHIKDLVTEDG----ADPNPYVKTYLLPDTHKTSKR-KTKISRKTRNPTFNEM 74
Query: 415 YTWEVYDPYTVIT-----LVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468
+ Y + L V ++ +G + + L + Y L
Sbjct: 75 LVYSGY-SKETLRQRELQLSVLS----AESLRENFFLGGITLPLKDFNLSKETVKWYQL 128
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 4e-11
Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 14/136 (10%)
Query: 18 GGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTG-TCDPYVEVKIGNYKG--- 73
G SG L S + + + V I AR L T DPY+++ I K
Sbjct: 1 GSSGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKV 60
Query: 74 -TTIPFEKKLNPEWNQVFAF---TKERLQAISVELLVKD-KMIVNGDFIGKIKIDMPDIP 128
T + K L+P +++ F F ++Q +++ + D IG++ I +
Sbjct: 61 KTRV-LRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPL---- 115
Query: 129 KRVPPDSPLAPEWKRL 144
+ + +
Sbjct: 116 SGIELSEGKMLMNREI 131
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 18/107 (16%)
Query: 198 KLWY------LRVNVIEAQDLVPKQRNR---NPEVFIKAIFGNV-VLKTTVSAKKTVNPT 247
L Y VN+ EA+ L +P + + + +KT V +KT++P
Sbjct: 14 SLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRV-LRKTLDPA 72
Query: 248 WNEDLMFVAAEPFDDP---LILTV--EDKLGDNKEECLGRLVLPLSK 289
++E F L T+ D+ + + +G +++PLS
Sbjct: 73 FDETFTFYGIPYTQIQELALHFTILSFDRFSRD--DIIGEVLIPLSG 117
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 5e-11
Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 26/147 (17%)
Query: 18 GGGRVSGRERLTSS------FDLVEQMEFLYVRIVRARDLQVNQVT-GTCDPYVEV---- 66
G ++ GR+ L + + ++ L V ++RAR L + T PYV+V
Sbjct: 3 GPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLE 62
Query: 67 ---KIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVK---DKMIVNGDFIGKI 120
I K K L+P + Q F E Q ++++V +M F+G
Sbjct: 63 NGACIAKKKTRIA--RKTLDPLYQQSLVF-DESPQGKVLQVIVWGDYGRMDHK-CFMGVA 118
Query: 121 KIDMPDIPKRVPPDSPLAPEWKRLEAK 147
+I + + + S + W +L
Sbjct: 119 QILL----EELDLSSMV-IGWYKLFPP 140
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 1e-07
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 27/119 (22%)
Query: 202 LRVNVIEAQDLVPKQRNRN-PEVFIKAIFGNVVL----------KTTVSAKKTVNPTWNE 250
L V VI A+ L K +++ P ++K V L KT + A+KT++P + +
Sbjct: 32 LEVEVIRARSLTQKPGSKSTPAPYVK-----VYLLENGACIAKKKTRI-ARKTLDPLYQQ 85
Query: 251 DLMFVAAEPFDDPLILTV---EDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNL 306
L+F P L + V ++ +G + L + WY L
Sbjct: 86 SLVF-DESPQGKVLQVIVWGDYGRMDHK--CFMGVAQILLEE----LDLSSMVIGWYKL 137
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 2e-06
Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 20/118 (16%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAY----------CVAKYANKWVRTRTVVDSFDPK 410
G LE+ ++ A+ L + T Y C+AK +TR + DP
Sbjct: 30 GQLEVEVIRARSLTQK--PGSKSTPAPYVKVYLLENGACIAKK-----KTRIARKTLDPL 82
Query: 411 WNEQYTWEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468
+ + ++ V+ ++V+ + + +G +I L L+ + Y L
Sbjct: 83 YQQSLVFDESPQGKVLQVIVWGD---YGRMDHKCFMGVAQILLEELDLSSMVIGWYKL 137
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 1e-10
Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 20/122 (16%)
Query: 41 LYVRIVRARDL-------QVNQVTGTCDPYVEVKI----GNYKGTTIPFEKKLNPEWNQV 89
L VR++ ARDL Q +PYV++ + N K T + K P + +
Sbjct: 28 LTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGV-KRKTQKPVFEER 86
Query: 90 FAF--TKERLQAISVELLVKD-KMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEA 146
+ F Q ++ L V D IGK+ + + ++ WK L
Sbjct: 87 YTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDL-----VKGGHWWKALIP 141
Query: 147 KD 148
Sbjct: 142 SG 143
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 4e-06
Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 14/118 (11%)
Query: 361 GVLELGILSAKELLPM----KSRDGRGTTDAYCVAKY---ANKWVRTRTVVDSFDPKWNE 413
L + ++ A++L P SR ++ Y +T + P + E
Sbjct: 26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85
Query: 414 QYTWEVYD---PYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468
+YT+E+ + L V D ++ IGKV + L ++ + L
Sbjct: 86 RYTFEIPFLEAQRRTLLLTVVD----FDKFSRHCVIGKVSVPLCEVDLVKGGHWWKAL 139
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 9e-06
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 31/132 (23%)
Query: 198 KLWY------LRVNVIEAQDLVPKQRN---------RNPEVFIKAIFG-NVVLKTTVSAK 241
Y L V VIEA+DL P + NP V I + +T V +
Sbjct: 18 STQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGV-KR 76
Query: 242 KTVNPTWNEDLMFVAAEPFDD----PLILTV--EDKLGDNKEECLGRLVLPLSKAGKRFL 295
KT P + E F PF + L+LTV DK + +G++ +PL +
Sbjct: 77 KTQKPVFEERYTFEI--PFLEAQRRTLLLTVVDFDKFSRH--CVIGKVSVPLCEV----D 128
Query: 296 PLPAAAIWYNLE 307
+ W L
Sbjct: 129 LVKGGHWWKALI 140
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 3e-09
Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 20/123 (16%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEV-------KIGNYKGTTIPFEKKLNPEWNQVFAF- 92
L V + R+L G DPYV + + G K K LNP ++Q F F
Sbjct: 26 LIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSK--KTLNPVFDQSFDFS 82
Query: 93 -TKERLQAISVELLVKDK---MIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148
+ +Q ++++ VK+ + + +GK+ + + +W L
Sbjct: 83 VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKG-----WTQWYDLTEDS 137
Query: 149 GSR 151
G
Sbjct: 138 GPS 140
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 8e-09
Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 37/135 (27%)
Query: 198 KLWY------LRVNVIEAQDLVPKQRNR-NPEVFIKAIFGNVVL----------KTTVSA 240
+ + L V V ++L+ + +P +++ + L KT V +
Sbjct: 16 TIRHSSQRNKLIVVVHACRNLIAFSEDGSDP--YVR-----MYLLPDKRRSGRRKTHV-S 67
Query: 241 KKTVNPTWNEDLMFVAAEPFDD----PLILTV--EDKLGDNKEECLGRLVLPLSKAGKRF 294
KKT+NP +++ F + L + V + LG++++ L+
Sbjct: 68 KKTLNPVFDQSFDFSV--SLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALAS----E 121
Query: 295 LPLPAAAIWYNLERN 309
WY+L +
Sbjct: 122 ELAKGWTQWYDLTED 136
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 16/119 (13%), Positives = 43/119 (36%), Gaps = 20/119 (16%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYCV------AKYANKWVRTRTVVDSFDPKWNEQ 414
L + + + + L+ +D Y + + + +T + +P +++
Sbjct: 24 NKLIVVVHACRNLIAF----SEDGSDPYVRMYLLPDKRRSGRR-KTHVSKKTLNPVFDQS 78
Query: 415 YTWEVYDPYTVIT-----LVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468
+ + V + + V ++ +GKV + L++ E + +T Y L
Sbjct: 79 FDFSV--SLPEVQRRTLDVAVKNSGGF--LSKDKGLLGKVLVALASEELAKGWTQWYDL 133
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 6e-09
Identities = 93/627 (14%), Positives = 186/627 (29%), Gaps = 181/627 (28%)
Query: 3 ELKEDFSLKET--SPKIGGGRVSGRE--RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTG 58
++F K+ PK +S E + S D V L+ ++ ++ V +
Sbjct: 28 AFVDNFDCKDVQDMPK---SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 59 TCD----PYVEVKIGN-YKGTTIP---FEKKLNPEWNQVFAFTK---ERLQAISV----- 102
++ I + ++ + ++ + +N F K RLQ
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 103 -ELLVKDKMIVNGDF-IGK------------IKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148
EL ++++G GK ++ M ++ W L+ +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF---KI--------FWLNLKNCN 193
Query: 149 GSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVYVSPK-----LWYLR 203
E++ + + Q D ++S + + + + + + K L L
Sbjct: 194 SPETVLEMLQKLLY--QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 204 VNVIEAQDLVPKQRNRNPEVFIKAIFGNV---VLKTT--------VSAKKTVNPTWNEDL 252
NV +N + A F N+ +L TT +SA T + + +
Sbjct: 252 -NV------------QNAKA-WNA-F-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 253 MFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIAN 312
+ ++ K D + + L R VL + P + I ++ +A
Sbjct: 296 -----MTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-------PRRLSIIAESIRDGLAT 343
Query: 313 GEEKKDVRF-----ASRICLRFSLDGG-----YH---VFDEATNYSSDLRSTMKQLWPPV 359
+ K V L L+ + VF + + + + +W
Sbjct: 344 WDNWKHVNCDKLTTIIESSLN-VLEPAEYRKMFDRLSVFPPSAHIPTI---LLSLIW--- 396
Query: 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEV 419
V NK + ++V+ K ++ T +
Sbjct: 397 -----------------------FDVIKSDVMVVVNKLHK-YSLVE----KQPKESTISI 428
Query: 420 YDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIR-------LSTLETDR-IYTH-SYPLVA 470
Y + + + + LH S + I L D+ Y+H + L
Sbjct: 429 PSIYLELKVKLENEYALH-----RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 471 LLPNG-VKKMGEVQLAVRF-------------TCSSFVNLLQT------YSQPLLPKMH- 509
+ + V L RF S +N LQ Y PK
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 510 YINPLSVFQIDSLRHQATHLLSSRLSR 536
+N + F L +L+ S+ +
Sbjct: 544 LVNAILDF----LPKIEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 9e-06
Identities = 53/326 (16%), Positives = 100/326 (30%), Gaps = 102/326 (31%)
Query: 453 LSTLETDRIY------THSYPLVALL----PNGVKKMGEVQLAVRFTCSSFV-NLLQT-Y 500
LS E D I + + L L V+K E L + + F+ + ++T
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY---KFLMSPIKTEQ 102
Query: 501 SQPLLPKMHYI---NPL----SVFQIDSL-RHQATHLLSSRLSRAEPPLRREVVEYLLDV 552
QP + YI + L VF ++ R Q L L P + +L
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP------AKNVLID 156
Query: 553 GSQMWSMRRGKANLA----RLMRFL--NGFGVAWIWFDQVRRWKNPMTTTFVHVFYVIMV 606
G + GK +A + F + W+ + +
Sbjct: 157 G--VLGS--GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL------------- 199
Query: 607 LFPQMILATFFFILFGVVIMKFKRRPRHPPHMDIKLS---------FADKAHPDEL---D 654
+L + + + R H ++ +++ K + + L
Sbjct: 200 ----EMLQKLLYQIDP----NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 655 -----EEFDTF-PSSKQGHIL-TTRY----DRLRSIAARMVTLNGDLD--SQLERLQSLI 701
+ ++ F S K IL TTR+ D L + ++L+ + E L+
Sbjct: 252 NVQNAKAWNAFNLSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 702 DWRD--------------PRATAMFS 713
+ D PR ++ +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIA 334
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 56.5 bits (135), Expect = 2e-08
Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 8/123 (6%)
Query: 189 CRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTW 248
+ L +L V+ A+ L + ++K FG +T V NP W
Sbjct: 383 NQDCCPRQRGLAHLVVSNFRAEHL-WGDYTTATDAYLKVFFGGQEFRTGV-VWNNNNPRW 440
Query: 249 NEDLMF-VAAEPFDDPLILTV--EDKLGDNKEECLGRLVLPL-SKAGKRFLPLPAAAIWY 304
+ + F PL + V D D+ + LG S + L + +
Sbjct: 441 TDKMDFENVLLSTGGPLRVQVWDADYGWDD--DLLGSCDRSPHSGFHEVTCELNHGRVKF 498
Query: 305 NLE 307
+
Sbjct: 499 SYH 501
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 53.0 bits (126), Expect = 2e-07
Identities = 19/89 (21%), Positives = 27/89 (30%), Gaps = 3/89 (3%)
Query: 37 QMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAF-TKE 95
+ L V RA L T D Y++V G + T NP W F
Sbjct: 392 GLAHLVVSNFRAEHL-WGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVL 450
Query: 96 RLQAISVELLVKDK-MIVNGDFIGKIKID 123
+ + V D + D +G
Sbjct: 451 LSTGGPLRVQVWDADYGWDDDLLGSCDRS 479
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 4e-04
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 385 TDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYD--PYTVITLVVFDNCHLHPGGAK 442
TDAY + + RT V ++ +P+W ++ +E + + V+D G
Sbjct: 414 TDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWD----ADYGWD 469
Query: 443 DSRIGKVRIRLSTLETD 459
D +G + +
Sbjct: 470 DDLLGSCDRSPHSGFHE 486
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 50.0 bits (118), Expect = 2e-06
Identities = 40/277 (14%), Positives = 81/277 (29%), Gaps = 34/277 (12%)
Query: 362 VLELGILSAKELLPMKSRDGRGTTDAYC-VAKYANKWVRTRT---VVDSFDPKWNEQYTW 417
VL+L I+ A+EL P K YC + + RT + W E + +
Sbjct: 12 VLKLWIIEARELPPKK--------RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEF 63
Query: 418 EVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVK 477
+ L ++ + K +G V + ++TL YP+ +G
Sbjct: 64 NNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSG-G 122
Query: 478 KMGEVQLAVRFTCSSFVNLLQTYSQPLLPKMHY--INPLSVFQIDSLR---HQATHLLSS 532
G + + + K Y ++ L + +L +
Sbjct: 123 SGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEFAEYVTNHYRMLCA 182
Query: 533 RLSRAEPPLRREVVEYLLDVGSQMWSMRRGKANLARLMRFLNGFGVAWIWFDQVRRWKNP 592
L A +E +V S + + + + + +V R+
Sbjct: 183 VLEPALNVKGKE------EVASALVHILQSTGKAKDFLSDMA--------MSEVDRFMER 228
Query: 593 MTTTFVH--VFYVIMVLFPQMILATFFFILFGVVIMK 627
F + + + ++I + G I
Sbjct: 229 EHLIFRENTLATKAIEEYMRLIGQKYLKDAIGEFIRA 265
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 42.7 bits (99), Expect = 4e-04
Identities = 16/121 (13%), Positives = 32/121 (26%), Gaps = 13/121 (10%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKI-GNYKGTTIPFEKKL---NPEWNQVFAFTKER 96
L + I+ AR+L Y E+ + T + W + F F
Sbjct: 13 LKLWIIEAREL-----PPKKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67
Query: 97 LQAISVELLVKD----KMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRA 152
L +D + ++G + + + + R + G
Sbjct: 68 AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMG 127
Query: 153 R 153
Sbjct: 128 S 128
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 42.3 bits (98), Expect = 6e-04
Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTV---NPTWNEDLMFVAAE 258
L++ +IEA++L PK+R + + +++ T S ++ W E F
Sbjct: 13 LKLWIIEARELPPKKRY-----YCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67
Query: 259 PFDDPLILTVED---KLGDNKEECLGRLVLPLSK 289
+ D K +K +G + +P++
Sbjct: 68 AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVAT 101
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAI 100
L V ++ A +L+ + G +PY E+ +G+ TT + LNP+WN F + L
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQD 448
Query: 101 SVELLVKDKMIVNGD-FIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149
+ L + D+ + D F+G+ +I + I P+ E G
Sbjct: 449 VLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTG 498
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
Query: 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEV 419
IG L + ++ A EL K G ++ YC ++ TRT+ D+ +PKWN + +
Sbjct: 386 IGRLMVHVIEATELKACKPN---GKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFI 442
Query: 420 YDPY-TVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKK 478
D Y V+ L +FD P D +G+ I ++ + T++ P+ L
Sbjct: 443 KDLYQDVLCLTLFDRDQFSP----DDFLGRTEIPVAKIRTEQ--ESKGPMTRRLLLHEVP 496
Query: 479 MGEVQL 484
GEV +
Sbjct: 497 TGEVWV 502
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624 | Back alignment and structure |
|---|
Score = 44.9 bits (105), Expect = 8e-05
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Query: 198 KLWYLRVNVIEAQDLVPKQRNR----NPEVFIKAIFG----NVVLKTTVSAKKTVNPTWN 249
+ LRV +I Q L +N+ +P+V ++ I G +T V NP W+
Sbjct: 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVE-IHGVGRDTGSRQTAVITNNGFNPRWD 553
Query: 250 EDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLS--KAGKRFLPL 297
+ F P + VED +K + +G+ +P + K G R + L
Sbjct: 554 MEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHL 603
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 1e-04
Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 18/131 (13%)
Query: 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDP-KWNEQYTWEVYD 421
L + + + EL RG D + + +R + + D ++E + W V
Sbjct: 23 LIVHLKTVSEL--------RGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVAS 74
Query: 422 PYT---VITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKK 478
V+ + +F+ + + IG R+ L + + S L+ N
Sbjct: 75 SIDRNEVLEIQIFNYSKVF----SNKLIGTFRMVLQKVVEENRVEVSDTLI--DDNNAII 128
Query: 479 MGEVQLAVRFT 489
+ + VR+
Sbjct: 129 KTSLSMEVRYQ 139
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 4e-04
Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 9/91 (9%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNP-TWNEDLMFVAAEPF 260
L V++ +L + + K F + V + + ++E + A
Sbjct: 23 LIVHLKTVSELRGR---ADR--IAKVTFRGQSFYSRV-LENCEDVADFDETFRWPVASSI 76
Query: 261 D--DPLILTVEDKLGDNKEECLGRLVLPLSK 289
D + L + + + + +G + L K
Sbjct: 77 DRNEVLEIQIFNYSKVFSNKLIGTFRMVLQK 107
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 768 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 100.0 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 100.0 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 100.0 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.97 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.83 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.82 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.81 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.81 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.8 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.8 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.8 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.8 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.79 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.79 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.79 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.78 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.77 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.76 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.76 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.76 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.76 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.76 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.76 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.75 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.75 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.75 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.75 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.74 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.74 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.74 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.74 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.74 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.73 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.73 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.72 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.72 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.72 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.71 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.71 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.71 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.71 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.71 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.71 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.71 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.71 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.71 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.7 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.7 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.7 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.7 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.7 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.7 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.69 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.69 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.69 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.69 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.68 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.68 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.68 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.67 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.67 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.67 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.67 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.67 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.67 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.67 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.66 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.66 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.65 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.64 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.64 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.61 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.6 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.6 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.58 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.58 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.56 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.55 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.54 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.52 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.5 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.45 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.43 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.42 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.33 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.28 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.17 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.16 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.13 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.1 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.07 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.04 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.02 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.0 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.87 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.83 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.66 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.53 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 92.21 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 87.57 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 85.85 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 84.75 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 84.46 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 81.08 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=294.84 Aligned_cols=245 Identities=25% Similarity=0.377 Sum_probs=205.3
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEEec--cCC
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKE--RLQ 98 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~~~--~~~ 98 (768)
|...+++.|+. ..+.|.|+|++|++|+.+|..|.+||||++++++ ++.+|+++++|.||+|||+|.|.+. ++.
T Consensus 6 G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~ 83 (284)
T 2r83_A 6 GKLQYSLDYDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELA 83 (284)
T ss_dssp CEEEEEEEEET--TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCT
T ss_pred eEEEEEEEEEC--CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhC
Confidence 35678888986 4689999999999999999999999999999974 4789999999999999999999975 345
Q ss_pred CceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC--CccceEEEEEEEEcccCCcccccccc
Q 004208 99 AISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG--SRARGELMFAIWFGTQADEAFSSAWH 175 (768)
Q Consensus 99 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~i~~~~~~d~~~~~~~~ 175 (768)
...|.|+|||++.+ +|++||++.++|.++..+. ....|++|.+..+ ....|+|.+++.+.+
T Consensus 84 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p----------- 147 (284)
T 2r83_A 84 GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQSAEKEEQEKLGDICFSLRYVP----------- 147 (284)
T ss_dssp TCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSS-----CEEEEEECBCCSSCCCCCCCEEEEEEEEET-----------
T ss_pred cCEEEEEEEECCCCCCCceeEEEEEcchhcccCC-----cceeEEEeeccccccccccccEEEEEEecC-----------
Confidence 68999999999998 8999999999999997653 3578999987643 236799998887642
Q ss_pred ccccccccccccccccceeecCCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEeeecccCCCCCCcccc
Q 004208 176 SDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG--N---VVLKTTVSAKKTVNPTWNE 250 (768)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg--~---~~~~T~~i~~~t~nP~wne 250 (768)
..+.|.|.|++|++|+.+|..+.+||||++++. + .+.+|+++++ +.||+|||
T Consensus 148 ----------------------~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne 204 (284)
T 2r83_A 148 ----------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYNE 204 (284)
T ss_dssp ----------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEE
T ss_pred ----------------------cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecC-CCCCEEce
Confidence 234699999999999999999999999999993 2 4678999887 99999999
Q ss_pred eEEEEecCCC--CCcEEEEEEeccCCCCCceeEEEEEeccccccc--------cCCCCCCceeEEcccC
Q 004208 251 DLMFVAAEPF--DDPLILTVEDKLGDNKEECLGRLVLPLSKAGKR--------FLPLPAAAIWYNLERN 309 (768)
Q Consensus 251 ~f~f~~~~~~--~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~--------~~~~~~~~~w~~L~~~ 309 (768)
+|.|.+.... ...|.|+|||+|..+++++||++.++++.+... ..++....+||+|.+.
T Consensus 205 ~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~ 273 (284)
T 2r83_A 205 SFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273 (284)
T ss_dssp EEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred eEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence 9999986542 346999999999999999999999999864321 1244567899999876
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-32 Score=283.27 Aligned_cols=230 Identities=23% Similarity=0.336 Sum_probs=190.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEeccCC
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG---NVVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKLGD 274 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg---~~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d~~ 274 (768)
+.|+|+|++|++|+.+|..+.+||||+++++ ++.++|+++++ ++||.|||+|.|.+... ....|.|+|||+|..
T Consensus 19 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~-~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~ 97 (284)
T 2r83_A 19 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRF 97 (284)
T ss_dssp TEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCS-CSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSS
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccC-CCCCeeCceEEEEechHHhCcCEEEEEEEECCCC
Confidence 4699999999999999999999999999994 35789999997 99999999999997643 457899999999998
Q ss_pred CCCceeEEEEEeccccccccCCCCCCceeEEcccCccCccccccccccceEEEEEecCCCcccccCcccccCcccccccc
Q 004208 275 NKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQ 354 (768)
Q Consensus 275 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (768)
+++++||++.++|.++.. +.....|++|...... .....|.+++.+...
T Consensus 98 ~~~~~lG~~~i~l~~l~~----~~~~~~w~~L~~~~~~-----~~~~~G~i~l~l~~~---------------------- 146 (284)
T 2r83_A 98 SKHDIIGEFKVPMNTVDF----GHVTEEWRDLQSAEKE-----EQEKLGDICFSLRYV---------------------- 146 (284)
T ss_dssp SCCCEEEEEEEEGGGCCC----SSCEEEEEECBCCSSC-----CCCCCCEEEEEEEEE----------------------
T ss_pred CCCceeEEEEEcchhccc----CCcceeEEEeeccccc-----cccccccEEEEEEec----------------------
Confidence 899999999999999863 3456889999875321 113457887766531
Q ss_pred CCCCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeCC---CcEE
Q 004208 355 LWPPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYDP---YTVI 426 (768)
Q Consensus 355 l~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~~---~~~l 426 (768)
+..|.|.|.|++|+||+.+ +..|.+||||++++++ ..++|+++++++||.|||.|.|.+..+ ...|
T Consensus 147 ---p~~~~l~v~v~~a~~L~~~---d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l 220 (284)
T 2r83_A 147 ---PTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQV 220 (284)
T ss_dssp ---TTTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEE
T ss_pred ---CcCCceEEEEEEeECCCCc---CCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEE
Confidence 2345799999999999985 6778999999999842 458999999999999999999999754 3479
Q ss_pred EEEEEeCCCCCCCCCCCCceEEEEEeccccc------------cCceeeeeEeeeec
Q 004208 427 TLVVFDNCHLHPGGAKDSRIGKVRIRLSTLE------------TDRIYTHSYPLVAL 471 (768)
Q Consensus 427 ~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~------------~~~~~~~~~~L~~~ 471 (768)
.|+|||++.++ +|++||++.|+++.+. +++...+||+|...
T Consensus 221 ~i~V~d~d~~~----~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~ 273 (284)
T 2r83_A 221 VVTVLDYDKIG----KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273 (284)
T ss_dssp EEEEEECCSSS----CCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred EEEEEeCCCCC----CCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence 99999999865 8999999999998632 24567899999754
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-33 Score=291.63 Aligned_cols=246 Identities=26% Similarity=0.361 Sum_probs=201.4
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeeeEeeeecCCCCCeeeeEEEEEec--cCC
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI---GNYKGTTIPFEKKLNPEWNQVFAFTKE--RLQ 98 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~---~~~~~~T~~~~~t~nP~Wne~f~f~~~--~~~ 98 (768)
|...+++.|+. ..+.|.|+|++|++|+.+|..|.+||||++++ +.++++|+++++|.||+|||+|.|.+. ++.
T Consensus 7 G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 84 (296)
T 1dqv_A 7 GRISFALRYLY--GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELA 84 (296)
T ss_dssp CEEEEEEECCS--SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGS
T ss_pred eEEEEEEEEeC--CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhc
Confidence 45678888886 46899999999999999999999999999999 457889999999999999999999974 444
Q ss_pred CceEEEEEEEcCCC-CCceeEEEEEc-CCCCCCCCCCCCCCCCeEEEcccCCCC-ccceEEEEEEEEcccCCcccccccc
Q 004208 99 AISVELLVKDKMIV-NGDFIGKIKID-MPDIPKRVPPDSPLAPEWKRLEAKDGS-RARGELMFAIWFGTQADEAFSSAWH 175 (768)
Q Consensus 99 ~~~L~i~V~d~~~~-~d~~lG~~~i~-l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~i~~~~~~d~~~~~~~~ 175 (768)
...|.|+|||+|.+ +|++||++.++ +.++.... .....|++|....+. ...|+|.+++.+.+
T Consensus 85 ~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~----~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~----------- 149 (296)
T 1dqv_A 85 QRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQP----PDRPLWRDILEGGSEKADLGELNFSLCYLP----------- 149 (296)
T ss_dssp SCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSC----SSCCCCEECBCCSSCCSCCCEEEEEEEEET-----------
T ss_pred CCEEEEEEEEcCCCCCCceEEEEEeccccccccCC----ccceeeeccccccccccccceEEEEEEecc-----------
Confidence 56899999999998 89999999996 44443211 124689999875432 35799999887742
Q ss_pred ccccccccccccccccceeecCCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEeeecccCCCCCCcccc
Q 004208 176 SDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG--N---VVLKTTVSAKKTVNPTWNE 250 (768)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg--~---~~~~T~~i~~~t~nP~wne 250 (768)
..+.|.|.|++|++|+.+|..|.+||||++++. + .+++|+++++ +.||.|||
T Consensus 150 ----------------------~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne 206 (296)
T 1dqv_A 150 ----------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN-TLNPTYNE 206 (296)
T ss_dssp ----------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCS-CSSCEEEE
T ss_pred ----------------------ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecC-CCCCeECc
Confidence 235799999999999999999999999999995 2 5789999987 99999999
Q ss_pred eEEEEecCCC--CCcEEEEEEeccCCCCCceeEEEEEecccccc-c--------cCCCCCCceeEEcccC
Q 004208 251 DLMFVAAEPF--DDPLILTVEDKLGDNKEECLGRLVLPLSKAGK-R--------FLPLPAAAIWYNLERN 309 (768)
Q Consensus 251 ~f~f~~~~~~--~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~-~--------~~~~~~~~~w~~L~~~ 309 (768)
.|.|.+.... ...|.|+|||++..+++++||++.++++.+.. . ..++....+|+.|...
T Consensus 207 ~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~ 276 (296)
T 1dqv_A 207 ALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE 276 (296)
T ss_dssp CCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred eEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence 9999886542 45799999999999999999999999987643 0 0134566778888765
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-31 Score=282.67 Aligned_cols=230 Identities=23% Similarity=0.324 Sum_probs=187.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEeccCC
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIF---GNVVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKLGD 274 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~l---g~~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d~~ 274 (768)
+.|+|+|++|++|+.+|..+.+||||++++ +++.++|+++++ ++||.|||+|.|.+... ....|.|+|||+|..
T Consensus 20 ~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~ 98 (296)
T 1dqv_A 20 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF 98 (296)
T ss_dssp CEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSS
T ss_pred CEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCC-CCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCC
Confidence 469999999999999999999999999999 568899999987 99999999999998543 345899999999999
Q ss_pred CCCceeEEEEEe-ccccccccCCCCCCceeEEcccCccCccccccccccceEEEEEecCCCcccccCcccccCccccccc
Q 004208 275 NKEECLGRLVLP-LSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSLDGGYHVFDEATNYSSDLRSTMK 353 (768)
Q Consensus 275 ~~d~~lG~~~i~-l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 353 (768)
+++++||++.++ +.++.. .......|++|...... ....|.|.+.+...
T Consensus 99 ~~~~~iG~~~i~~l~~~~~---~~~~~~~w~~L~~~~~~------~~~~G~i~vsl~y~--------------------- 148 (296)
T 1dqv_A 99 SRHDLIGQVVLDNLLELAE---QPPDRPLWRDILEGGSE------KADLGELNFSLCYL--------------------- 148 (296)
T ss_dssp SCCCEEEEEECCCTTGGGS---SCSSCCCCEECBCCSSC------CSCCCEEEEEEEEE---------------------
T ss_pred CCCceEEEEEecccccccc---CCccceeeecccccccc------ccccceEEEEEEec---------------------
Confidence 999999999996 444432 12346789999865321 13458888776531
Q ss_pred cCCCCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEec--C---eeeeeccccCCCCCccccEEEEEEeCC---CcE
Q 004208 354 QLWPPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYA--N---KWVRTRTVVDSFDPKWNEQYTWEVYDP---YTV 425 (768)
Q Consensus 354 ~l~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g--~---~~~~T~~~~~t~nP~wne~~~~~v~~~---~~~ 425 (768)
+..|.|+|.|++|+||+++ +..|.+||||+++++ + ..+||+++++++||.|||.|.|.+... ...
T Consensus 149 ----~~~~~l~v~v~~a~~L~~~---d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~ 221 (296)
T 1dqv_A 149 ----PTAGLLTVTIIKASNLKAM---DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVG 221 (296)
T ss_dssp ----TTTTEEEEEEEEEESCCCC---SSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCC
T ss_pred ----cccceeEEEEEEeecCCcc---CCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcE
Confidence 2346899999999999986 677889999999995 3 468999999999999999999998754 347
Q ss_pred EEEEEEeCCCCCCCCCCCCceEEEEEecccccc-------------CceeeeeEeeeec
Q 004208 426 ITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLET-------------DRIYTHSYPLVAL 471 (768)
Q Consensus 426 l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~-------------~~~~~~~~~L~~~ 471 (768)
|.|+|||++.++ +|++||.+.|+++.+.. +++..+|++|...
T Consensus 222 L~i~V~d~d~~~----~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~ 276 (296)
T 1dqv_A 222 LSIAVVDYDCIG----HNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE 276 (296)
T ss_dssp CCCEEEECCSSS----CCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred EEEEEEeCCCCC----CCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence 999999999865 89999999999997643 3455677777544
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=171.24 Aligned_cols=124 Identities=29% Similarity=0.442 Sum_probs=110.2
Q ss_pred ccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCC
Q 004208 32 FDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMI 111 (768)
Q Consensus 32 ~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~ 111 (768)
.+...+.+.|.|+|++|++|+..|..|.+||||++++++++.+|++++++.||+|||+|.|.+.+. ...|.|+|||++.
T Consensus 6 ~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~d~ 84 (133)
T 2ep6_A 6 SGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDG 84 (133)
T ss_dssp CCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEET
T ss_pred ccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEECCC
Confidence 345567899999999999999999999999999999999999999999999999999999999875 5789999999999
Q ss_pred C-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC-CccceEEEEEEEEc
Q 004208 112 V-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG-SRARGELMFAIWFG 163 (768)
Q Consensus 112 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~i~~~ 163 (768)
. +|++||++.+++.++..+ ..+|++|.+..+ ....|+|.+++.+.
T Consensus 85 ~~~~~~lG~~~i~l~~l~~~-------~~~w~~L~~~~~~~~~~G~i~l~i~~~ 131 (133)
T 2ep6_A 85 DKPPDFLGKVAIPLLSIRDG-------QPNCYVLKNKDLEQAFKGVIYLEMDLI 131 (133)
T ss_dssp TEEEEECCBCEEEGGGCCSS-------CCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred CCCCCeeEEEEEEHHHccCC-------CceEEEeecCCCCCccceEEEEEEEEE
Confidence 8 899999999999998654 358999997654 24789999998764
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-20 Score=168.86 Aligned_cols=123 Identities=26% Similarity=0.461 Sum_probs=109.4
Q ss_pred CCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCC
Q 004208 357 PPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHL 436 (768)
Q Consensus 357 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~ 436 (768)
.+..|.|+|+|++|+||+++ +..|.+||||+++++++.+||+++++++||.|||.|.|.+.++...|.|+|||++.+
T Consensus 9 ~~~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~ 85 (133)
T 2ep6_A 9 VKDVGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGD 85 (133)
T ss_dssp CCCSEEEEEEEEEEESCCCS---SSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETT
T ss_pred cCCceEEEEEEEeeECCCCC---CCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCC
Confidence 46789999999999999985 677899999999999999999999999999999999999998888999999999986
Q ss_pred CCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 437 HPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 437 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
+ +|++||++.|+|.++..+. .+||+|......+ +..|+|+|+++|.
T Consensus 86 ~----~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~-~~~G~i~l~i~~~ 131 (133)
T 2ep6_A 86 K----PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLI 131 (133)
T ss_dssp E----EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEE
T ss_pred C----CCCeeEEEEEEHHHccCCC--ceEEEeecCCCCC-ccceEEEEEEEEE
Confidence 5 7999999999999998776 5899998665433 4569999999984
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=166.53 Aligned_cols=123 Identities=21% Similarity=0.345 Sum_probs=107.7
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccC---CCceEEEEEEEcCCC-
Q 004208 37 QMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERL---QAISVELLVKDKMIV- 112 (768)
Q Consensus 37 ~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~---~~~~L~i~V~d~~~~- 112 (768)
..+.|.|+|++|++|+..|. |.+||||++++++++++|++++++.||+|||+|.|.+... ....|.|+|||++.+
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~ 83 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIG 83 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSS
T ss_pred CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCC
Confidence 35799999999999999998 9999999999999999999999999999999999998643 368999999999998
Q ss_pred CCceeEEEEEcCCCCCCCCCCCCCCCCeEEE---cccCCCCccceEEEEEEEEccc
Q 004208 113 NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKR---LEAKDGSRARGELMFAIWFGTQ 165 (768)
Q Consensus 113 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~---L~~~~~~~~~G~i~l~i~~~~~ 165 (768)
+|++||++.++|.++..+. ....|++ |.+..+....|+|.+++.|.+.
T Consensus 84 ~~~~lG~~~i~l~~l~~~~-----~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 84 QNKLIGTATVALKDLTGDQ-----SRSLPYKLISLLNEKGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp SCCCCEEEEEEGGGTCSSS-----CEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred CCceEEEEEEEHHHhccCC-----CceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence 8999999999999997653 2468987 7766665577999999999753
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-19 Score=168.19 Aligned_cols=119 Identities=22% Similarity=0.267 Sum_probs=102.1
Q ss_pred CeeeEEEEEEEEecCCCCCCCC-------CCCCCcCcEEEEEecCee-eeeccccCCCCCccccEEEEEEeCCCcEEEEE
Q 004208 358 PVIGVLELGILSAKELLPMKSR-------DGRGTTDAYCVAKYANKW-VRTRTVVDSFDPKWNEQYTWEVYDPYTVITLV 429 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~-------~~~g~~dpyv~v~~g~~~-~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~ 429 (768)
...|.|+|+|++|+||+++|.. ...|.+||||+++++++. .||+++++|+||.|||.|.|.+.+ ...|.|+
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~ 104 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELA 104 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEE
Confidence 5789999999999999986410 023679999999998866 799999999999999999999975 4589999
Q ss_pred EEeCCCCCCCCCCCCceEEEEEeccccccC----ceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 430 VFDNCHLHPGGAKDSRIGKVRIRLSTLETD----RIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 430 v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
|||++.++ +|++||++.|+|.++..+ .....||+|.. .|+|+|+++++
T Consensus 105 V~D~d~~~----~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--------~G~i~l~l~~~ 156 (157)
T 2fk9_A 105 VFHETPLG----YDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--------EGKVFVVITLT 156 (157)
T ss_dssp EEECCSSS----SCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--------SCEEEEEEEEC
T ss_pred EEECCCCC----CCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--------CcEEEEEEEEE
Confidence 99999866 899999999999999865 67889999942 59999999985
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.6e-19 Score=165.76 Aligned_cols=127 Identities=24% Similarity=0.401 Sum_probs=102.1
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEc
Q 004208 36 EQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN------YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDK 109 (768)
Q Consensus 36 ~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~ 109 (768)
...+.|.|+|++|++|+..|..|.+||||++++++ .+++|+++++|.||+|||+|.|.+... ...|.|+|||+
T Consensus 17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d~ 95 (153)
T 3b7y_A 17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFDE 95 (153)
T ss_dssp TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEEC
T ss_pred CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEEEC
Confidence 45789999999999999999889999999999984 578999999999999999999998764 67899999999
Q ss_pred CCC-CCceeEEEEEcCCCCCCCCCCC-CCCCCeEEEcccCCC-CccceEEEEEEEEc
Q 004208 110 MIV-NGDFIGKIKIDMPDIPKRVPPD-SPLAPEWKRLEAKDG-SRARGELMFAIWFG 163 (768)
Q Consensus 110 ~~~-~d~~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~~-~~~~G~i~l~i~~~ 163 (768)
+.. +|++||++.++|.++..+.... .....+|++|.+..+ ....|+|.++++|.
T Consensus 96 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~ 152 (153)
T 3b7y_A 96 NRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL 152 (153)
T ss_dssp CSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred CCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEe
Confidence 998 8999999999999997664321 223469999987643 34789999999885
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.5e-19 Score=164.39 Aligned_cols=125 Identities=20% Similarity=0.312 Sum_probs=106.0
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCC--
Q 004208 359 VIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHL-- 436 (768)
Q Consensus 359 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~-- 436 (768)
..|.|+|+|++|+||+++ +..|.+||||+++++++.++|+++++++||.|||.|.|.+.++.+.|.|+|||++..
T Consensus 15 ~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~ 91 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAK---DKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIK 91 (148)
T ss_dssp CCEEEEEEEEEEESCCCC---STTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHH
T ss_pred cccEEEEEEEeeeCCCCC---CCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCcc
Confidence 358999999999999985 667899999999999999999999999999999999999998888999999999974
Q ss_pred -----CCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 437 -----HPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 437 -----~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
..+.++|++||++.|+|.++.. ...+||+|..... ..+..|+|+|+++|+
T Consensus 92 ~~~~~~~~~~~~~~lG~~~i~l~~l~~--~~~~w~~L~~~~~-~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 92 SRVKQRFKRESDDFLGQTIIEVRTLSG--EMDVWYNLDKRTD-KSAVSGAIRLHISVE 146 (148)
T ss_dssp HHHHTTTSSCSSEEEEEEEEEGGGCCS--EEEEEEECBCSST-TCCCCCEEEEEEEEE
T ss_pred ccccccccCCCCccEEEEEEEHHHCcC--CCCEEEEcccCCC-CCCCceEEEEEEEEE
Confidence 0000379999999999999943 4579999975432 233569999999986
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-19 Score=164.47 Aligned_cols=123 Identities=24% Similarity=0.321 Sum_probs=108.5
Q ss_pred CeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeecccc-CCCCCccccEEEEEEeCCCcEEEEEEEeCCCC
Q 004208 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVV-DSFDPKWNEQYTWEVYDPYTVITLVVFDNCHL 436 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~-~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~ 436 (768)
...|.|+|+|++|+||+.. +..|.+||||+++++++.+||++++ ++.||.|||.|.|.+.+....|.|+|||++.+
T Consensus 7 ~~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~ 83 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDA---DFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG 83 (136)
T ss_dssp CCEEEEEEEEEEEEECSSC---CSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred CCcEEEEEEEEeccCCCCc---ccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCC
Confidence 4678999999999999985 6678999999999999999999998 89999999999999998778999999999986
Q ss_pred CCCCCCCCceEEEEEecccc-ccCceeeeeEeeeecCCCCcccccEEEEEEEEEec
Q 004208 437 HPGGAKDSRIGKVRIRLSTL-ETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFTCS 491 (768)
Q Consensus 437 ~~~~~~d~~lG~~~i~l~~l-~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 491 (768)
+ +|++||.+.|+|.++ ..+.....||+|. . +.+..|+|+|+++|.+.
T Consensus 84 ~----~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~---~~~~~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 84 T----EDDAVGEATIPLEPVFVEGSIPPTAYNVV-K---DEEYKGEIWVALSFKPS 131 (136)
T ss_dssp T----TTCCSEEEEEESHHHHHHSEEEEEEEEEE-E---TTEEEEEEEEEEEEEEC
T ss_pred C----CCceEEEEEEEHHHhccCCCCCcEEEEee-c---CCccCEEEEEEEEEEeC
Confidence 5 899999999999999 5566667899998 2 33466999999999653
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.6e-19 Score=162.70 Aligned_cols=125 Identities=19% Similarity=0.330 Sum_probs=106.6
Q ss_pred CeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCC----CcEEEEEEEeC
Q 004208 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDP----YTVITLVVFDN 433 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~----~~~l~v~v~d~ 433 (768)
...|.|+|+|++|+||+.. +. |.+||||+++++++.+||+++++++||.|||.|.|.+..+ ...|.|+|||+
T Consensus 4 ~~~g~L~v~v~~a~~L~~~---~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~ 79 (140)
T 2dmh_A 4 GSSGMLRVIVESASNIPKT---KF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDF 79 (140)
T ss_dssp CBCCEEEEEEEEEESCCCC---SS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEET
T ss_pred CCCcEEEEEEEEeeCCCCC---CC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEEC
Confidence 3467899999999999985 55 8999999999999999999999999999999999999753 56999999999
Q ss_pred CCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeec-CCCCcccccEEEEEEEEEe
Q 004208 434 CHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVAL-LPNGVKKMGEVQLAVRFTC 490 (768)
Q Consensus 434 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~-~~~g~~~~G~i~l~~~~~~ 490 (768)
+.++ +|++||++.|+|.++..+.....||+|... ...+....|+|+++++|.+
T Consensus 80 d~~~----~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p 133 (140)
T 2dmh_A 80 ETIG----QNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDP 133 (140)
T ss_dssp TCSS----SCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECC
T ss_pred CCCC----CCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEEC
Confidence 9865 899999999999999988877889883322 2234445699999999953
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-18 Score=163.47 Aligned_cols=119 Identities=25% Similarity=0.428 Sum_probs=105.4
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC----
Q 004208 37 QMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV---- 112 (768)
Q Consensus 37 ~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~---- 112 (768)
..+.|.|+|++|++|+..|..|.+||||++++++++.+|+++++|.||+|||+|.|.+... ...|.|+|||++..
T Consensus 15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~~~~~ 93 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDIKSR 93 (148)
T ss_dssp CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCSHHHH
T ss_pred cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 4689999999999999999999999999999999999999999999999999999999766 57899999999973
Q ss_pred --------CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCC-ccceEEEEEEEEc
Q 004208 113 --------NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS-RARGELMFAIWFG 163 (768)
Q Consensus 113 --------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~i~~~ 163 (768)
+|++||++.++|.++... ..+|++|....+. ...|+|.++++|.
T Consensus 94 ~~~~~~~~~~~~lG~~~i~l~~l~~~-------~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 94 VKQRFKRESDDFLGQTIIEVRTLSGE-------MDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp HHTTTSSCSSEEEEEEEEEGGGCCSE-------EEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred ccccccCCCCccEEEEEEEHHHCcCC-------CCEEEEcccCCCCCCCceEEEEEEEEE
Confidence 899999999999998432 4799999976542 3679999999874
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=167.78 Aligned_cols=128 Identities=23% Similarity=0.399 Sum_probs=102.4
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcC
Q 004208 37 QMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN------YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKM 110 (768)
Q Consensus 37 ~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~ 110 (768)
..+.|.|+|++|++|+..|..|.+||||++++++ .+++|++++++.||+|||+|.|.+... ...|.|+|||++
T Consensus 6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~L~~~V~d~d 84 (176)
T 3m7f_B 6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ-RHRILFEVFDEN 84 (176)
T ss_dssp TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT-TCEEEEEEEECC
T ss_pred CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC-CCEEEEEEEECC
Confidence 4689999999999999999999999999999986 578999999999999999999998754 578999999999
Q ss_pred CC-CCceeEEEEEcCCCCCCCCCC-CCCCCCeEEEcccCCC-CccceEEEEEEEEccc
Q 004208 111 IV-NGDFIGKIKIDMPDIPKRVPP-DSPLAPEWKRLEAKDG-SRARGELMFAIWFGTQ 165 (768)
Q Consensus 111 ~~-~d~~lG~~~i~l~~l~~~~~~-~~~~~~~w~~L~~~~~-~~~~G~i~l~i~~~~~ 165 (768)
.+ +|++||++.|+|.++...... +.....+||+|....+ .+..|+|.+++.|.+.
T Consensus 85 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 85 RLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp ----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred CCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 98 999999999999999765322 1223348999997653 3468999999999865
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-19 Score=166.59 Aligned_cols=124 Identities=22% Similarity=0.322 Sum_probs=108.3
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeec-CCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-C
Q 004208 36 EQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFE-KKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-N 113 (768)
Q Consensus 36 ~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~ 113 (768)
.+.+.|.|+|++|++|+..|..|.+||||++++++++.+|++++ ++.||+|||+|.|.+.+ ....|.|+|||++.+ +
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~~~~ 85 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDVGTE 85 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSSCTT
T ss_pred CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECCCCCC
Confidence 36789999999999999999899999999999999999999998 89999999999999987 478999999999988 8
Q ss_pred CceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcccC
Q 004208 114 GDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQA 166 (768)
Q Consensus 114 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~~~ 166 (768)
|++||++.++|.++.... ....+|++|. .+.+..|+|.+++.|.+..
T Consensus 86 d~~lG~~~i~l~~l~~~~----~~~~~w~~L~--~~~~~~G~i~l~l~~~p~~ 132 (136)
T 1wfj_A 86 DDAVGEATIPLEPVFVEG----SIPPTAYNVV--KDEEYKGEIWVALSFKPSG 132 (136)
T ss_dssp TCCSEEEEEESHHHHHHS----EEEEEEEEEE--ETTEEEEEEEEEEEEEECC
T ss_pred CceEEEEEEEHHHhccCC----CCCcEEEEee--cCCccCEEEEEEEEEEeCC
Confidence 999999999999984321 2246899998 2345789999999997644
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=163.17 Aligned_cols=124 Identities=23% Similarity=0.362 Sum_probs=101.1
Q ss_pred CeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC------eeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEE
Q 004208 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN------KWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVF 431 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~------~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~ 431 (768)
+..|.|+|+|++|+||+.+ +..|.+||||++++++ +.+||+++++++||.|||.|.|.+......|.|+||
T Consensus 17 ~~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~ 93 (153)
T 3b7y_A 17 ENSRIVRVRVIAGIGLAKK---DILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVF 93 (153)
T ss_dssp TTCEEEEEEEEEEESCC----------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEE
T ss_pred CCccEEEEEEEEeeCCCCC---CCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEE
Confidence 5678999999999999985 6678999999999974 578999999999999999999999887789999999
Q ss_pred eCCCCCCCCCCCCceEEEEEeccccccCce------eeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 432 DNCHLHPGGAKDSRIGKVRIRLSTLETDRI------YTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 432 d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
|++.++ +|++||++.|+|.++..+.. ...||+|..... +.+..|+|+++++|.
T Consensus 94 d~d~~~----~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~-~~~~~G~i~l~l~~~ 152 (153)
T 3b7y_A 94 DENRLT----RDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSH-KSRVKGYLRLKMTYL 152 (153)
T ss_dssp ECCSSS----CCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSST-TCCCCSEEEEEEEEC
T ss_pred ECCCCc----CCCeeEEEEEEHHHcccCCCcccccccccccccccccC-CCCcceEEEEEEEEe
Confidence 999865 89999999999999987642 258999976543 234569999999983
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=161.92 Aligned_cols=121 Identities=21% Similarity=0.250 Sum_probs=101.9
Q ss_pred CCeeEEEEEEEEeecCCCCCC----------CCCCCcEEEEEECCeE-EeeecccCCCCCCcccceEEEEecCCCCCcEE
Q 004208 197 PKLWYLRVNVIEAQDLVPKQR----------NRNPEVFIKAIFGNVV-LKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLI 265 (768)
Q Consensus 197 p~~~~L~V~v~~a~~L~~~d~----------~~~~dpyV~v~lg~~~-~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~ 265 (768)
...|.|+|+|++|++|+++|. .+.+||||++.++++. .+|+++++ |+||+|||+|.|.+.+ ...|.
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~k-tlnP~WNE~F~f~v~~--~~~L~ 102 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQK-TNKPTYNEEFCANVTD--GGHLE 102 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEE--ECEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCC-CCCCccCcEEEEEcCC--CCEEE
Confidence 456799999999999998873 3679999999998865 69999887 9999999999999865 35899
Q ss_pred EEEEeccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccCccCccccccccccceEEEEEecCC
Q 004208 266 LTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSLDG 333 (768)
Q Consensus 266 i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~~~ 333 (768)
|+|||+|..+++++||++.|+|+++....+.+...+.||+|.+. |+|++++.++|
T Consensus 103 ~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~~-------------G~i~l~l~~~g 157 (157)
T 2fk9_A 103 LAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEPE-------------GKVFVVITLTG 157 (157)
T ss_dssp EEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBSS-------------CEEEEEEEEC-
T ss_pred EEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCCC-------------cEEEEEEEEEC
Confidence 99999999999999999999999987542233557899999753 89999988753
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-18 Score=163.96 Aligned_cols=125 Identities=24% Similarity=0.367 Sum_probs=100.9
Q ss_pred CeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC------eeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEE
Q 004208 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN------KWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVF 431 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~------~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~ 431 (768)
...|.|+|+|++|+||+.+ +..|.+||||++++++ +.++|+++++++||.|||.|.|.+......|.|+||
T Consensus 5 ~~~g~L~V~v~~a~~L~~~---d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~ 81 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKK---DILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVF 81 (176)
T ss_dssp TTCEEEEEEEEEEESCC------CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEE
T ss_pred CCcEEEEEEEEEeeCCCCc---CCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEE
Confidence 4678999999999999985 6778999999999976 578999999999999999999999877779999999
Q ss_pred eCCCCCCCCCCCCceEEEEEeccccccCcee-e-----eeEeeeecCCCCcccccEEEEEEEEEe
Q 004208 432 DNCHLHPGGAKDSRIGKVRIRLSTLETDRIY-T-----HSYPLVALLPNGVKKMGEVQLAVRFTC 490 (768)
Q Consensus 432 d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~-~-----~~~~L~~~~~~g~~~~G~i~l~~~~~~ 490 (768)
|++.++ +|++||.+.|+|.++..+... . .||+|..... +.+..|+|+|+++|.+
T Consensus 82 d~d~~~----~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~l~~~p 141 (176)
T 3m7f_B 82 DENRLT----RDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSH-KSRVKGYLRLKMTYLP 141 (176)
T ss_dssp ECC--------CEEEEEEEEESCSCCBC------CCCCEEEECBCSST-TCCCCSEEEEEEEECC
T ss_pred ECCCCC----CCcEEEEEEEEHHHccccCCcccccccccEEEccccCC-CCccCEEEEEEEEEEe
Confidence 999865 899999999999999876432 1 7999976543 3345699999999953
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=157.30 Aligned_cols=115 Identities=21% Similarity=0.275 Sum_probs=98.6
Q ss_pred ccEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCC
Q 004208 38 MEFLYVRIVRARDLQVN---QVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMI 111 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~---d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~ 111 (768)
.+.|.|+|++|++|+.+ |..|.+||||++++++ ++++|+++++|.||+|||+|.|.+.......|.|+|||++.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 46899999999999984 6678999999999996 78899999999999999999999976667899999999998
Q ss_pred CCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEE
Q 004208 112 VNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIW 161 (768)
Q Consensus 112 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~ 161 (768)
.+|++||++.++|.++..+. ....|++|.+. ..|+|.+++.
T Consensus 82 ~~~~~iG~~~i~l~~l~~~~-----~~~~~~~L~~~----~~g~i~~~le 122 (126)
T 1rlw_A 82 VMDETLGTATFTVSSMKVGE-----KKEVPFIFNQV----TEMVLEMSLE 122 (126)
T ss_dssp SCCEEEEEEEEEGGGSCTTC-----EEEEEEEETTT----EEEEEEEEEE
T ss_pred CCCceeEEEEEEHHHccCCC-----cEEEEEEcCCC----ceEEEEEEEE
Confidence 88999999999999997552 24789999862 3477776654
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-18 Score=159.30 Aligned_cols=116 Identities=21% Similarity=0.354 Sum_probs=98.9
Q ss_pred ccEEEEEEEEeecCCCCCCCCC-----------CCcEEEEEECCee-eEeeeecCCCCCeeeeEEEEEeccCCCceEEEE
Q 004208 38 MEFLYVRIVRARDLQVNQVTGT-----------CDPYVEVKIGNYK-GTTIPFEKKLNPEWNQVFAFTKERLQAISVELL 105 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~-----------~dPyv~v~~~~~~-~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~ 105 (768)
.+.|.|+|++|++|++.|..+. +||||++++++++ .+|+++++|.||+|||+|.|.+.+. ..|.|+
T Consensus 5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L~~~ 82 (136)
T 1gmi_A 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIELA 82 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEEEEE
T ss_pred ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC--CEEEEE
Confidence 4799999999999998875443 9999999998865 6999999999999999999998764 789999
Q ss_pred EEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcc
Q 004208 106 VKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGT 164 (768)
Q Consensus 106 V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~ 164 (768)
|||+|.. +|++||++.+++.++..+.. .....|++|++ .|+|++.+.|..
T Consensus 83 V~d~d~~~~dd~iG~~~i~l~~l~~~~~---~~~~~w~~L~~------~G~i~l~l~~~~ 133 (136)
T 1gmi_A 83 VFHDAPIGYDDFVANCTIQFEELLQNGS---RHFEDWIDLEP------EGKVYVIIDLSG 133 (136)
T ss_dssp EEECCSSSSCEEEEEEEEEHHHHTSTTC---SEEEEEEECBS------SCEEEEEEEEEE
T ss_pred EEeCCCCCCCCEEEEEEEEHHHhcccCC---CCccEEEEcCC------CeEEEEEEEEEe
Confidence 9999988 89999999999999876421 12378999874 499999998864
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.5e-19 Score=164.15 Aligned_cols=115 Identities=14% Similarity=0.161 Sum_probs=99.5
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeEeeeecCCCCCeeeeEEEEEecc--
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN------YKGTTIPFEKKLNPEWNQVFAFTKER-- 96 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~Wne~f~f~~~~-- 96 (768)
...+++.|+. ..+.|.|+|++|+||+++|.+|.+||||++++.+ .++||+++++|+||+|||+|.|.+..
T Consensus 31 ~l~~sl~y~~--~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~ 108 (155)
T 2z0u_A 31 RIQIALKYDE--KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPA 108 (155)
T ss_dssp EEEEEEEEET--TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHH
T ss_pred EEEEEEEEcC--CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHH
Confidence 5678888885 4689999999999999999999999999999975 27899999999999999999999753
Q ss_pred CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 97 LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 97 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
+....|.|+|||+|.+ ++++||++.++|.++.... ....+|++|.
T Consensus 109 l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~----~~~~~W~~L~ 154 (155)
T 2z0u_A 109 LHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSG----ERSTRWYNLL 154 (155)
T ss_dssp HHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTC----CCEEEEEEEB
T ss_pred hCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCC----CccccceEcc
Confidence 3457899999999998 9999999999999996321 2357999985
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-18 Score=156.78 Aligned_cols=113 Identities=20% Similarity=0.321 Sum_probs=95.7
Q ss_pred cccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeEeeeecCCCCCeeeeEEEEE-ec--cCC
Q 004208 27 RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYKGTTIPFEKKLNPEWNQVFAFT-KE--RLQ 98 (768)
Q Consensus 27 ~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~Wne~f~f~-~~--~~~ 98 (768)
-+.+.|+.. .+.|.|+|++|+||+. +..|.+||||++++ +..+.+|+++++|.||+|||+|.|. +. ++.
T Consensus 10 ~~~~~~~~~--~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~ 86 (134)
T 2b3r_A 10 AVKLSVSYR--NGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLR 86 (134)
T ss_dssp EEEEEEEEE--TTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHT
T ss_pred EEEEEEeec--CCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhC
Confidence 355566653 5899999999999987 77899999999999 3467899999999999999999999 65 335
Q ss_pred CceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccC
Q 004208 99 AISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAK 147 (768)
Q Consensus 99 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 147 (768)
...|.|+|||++.+ ++++||++.++|.++..+. ...+|++|.+.
T Consensus 87 ~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L~~~ 131 (134)
T 2b3r_A 87 QRELQLSVLSAESLRENFFLGGITLPLKDFNLSK-----ETVKWYQLTAA 131 (134)
T ss_dssp TCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTS-----CEEEEEECBC-
T ss_pred cCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCC-----CcceeEECCCc
Confidence 68999999999998 8999999999999997642 25799999875
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-18 Score=154.59 Aligned_cols=117 Identities=15% Similarity=0.240 Sum_probs=97.8
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC---eeeeeccccCCCCCccccEEEEEEeC-CCcEEEEEEEeCCC
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN---KWVRTRTVVDSFDPKWNEQYTWEVYD-PYTVITLVVFDNCH 435 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~---~~~~T~~~~~t~nP~wne~~~~~v~~-~~~~l~v~v~d~~~ 435 (768)
.|.|+|+|++|+||++++..+..|.+||||++++++ +.+||+++++++||.|||.|.|.+.. ....|.|+|||++.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 478999999999999742224568899999999985 78999999999999999999999965 45699999999997
Q ss_pred CCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEE
Q 004208 436 LHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVR 487 (768)
Q Consensus 436 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 487 (768)
+ +|++||.+.|+|+++..+.....||+|.. +..|.|++++.
T Consensus 82 ~-----~~~~iG~~~i~l~~l~~~~~~~~~~~L~~------~~~g~i~~~le 122 (126)
T 1rlw_A 82 V-----MDETLGTATFTVSSMKVGEKKEVPFIFNQ------VTEMVLEMSLE 122 (126)
T ss_dssp S-----CCEEEEEEEEEGGGSCTTCEEEEEEEETT------TEEEEEEEEEE
T ss_pred C-----CCceeEEEEEEHHHccCCCcEEEEEEcCC------CceEEEEEEEE
Confidence 4 48899999999999999988899999953 22356666554
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-18 Score=156.69 Aligned_cols=114 Identities=27% Similarity=0.486 Sum_probs=95.2
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeEeeeecCCCCCeeeeEEEEEe---c
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYKGTTIPFEKKLNPEWNQVFAFTK---E 95 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~Wne~f~f~~---~ 95 (768)
|...+++.|+. ..+.|.|+|++|+||+..|..|.+||||++++ +..+++|+++++|.||+|||+|.|.+ .
T Consensus 5 G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 82 (129)
T 2bwq_A 5 GQLSIKLWFDK--VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR 82 (129)
T ss_dssp CEEEEEEEEET--TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGG
T ss_pred EEEEEEEEEcc--CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHH
Confidence 35677888885 45899999999999999999999999999999 34688999999999999999999995 2
Q ss_pred cCCCceEEEEEEEcCCC-C--CceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 96 RLQAISVELLVKDKMIV-N--GDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 96 ~~~~~~L~i~V~d~~~~-~--d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
++....|.|+|||++.. + +++||++.++|.++.... ..+||+|+
T Consensus 83 ~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~------~~~W~~Lq 129 (129)
T 2bwq_A 83 EFRERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQ 129 (129)
T ss_dssp GGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS------CEEEEECC
T ss_pred HhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc------CCccEECc
Confidence 34468999999999998 5 999999999999987642 57999984
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-18 Score=156.46 Aligned_cols=120 Identities=21% Similarity=0.299 Sum_probs=100.0
Q ss_pred eeeEEEEEEEEecCCCCCCCCC--------CCCCcCcEEEEEecCee-eeeccccCCCCCccccEEEEEEeCCCcEEEEE
Q 004208 359 VIGVLELGILSAKELLPMKSRD--------GRGTTDAYCVAKYANKW-VRTRTVVDSFDPKWNEQYTWEVYDPYTVITLV 429 (768)
Q Consensus 359 ~~g~l~v~v~~a~~L~~~~~~~--------~~g~~dpyv~v~~g~~~-~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~ 429 (768)
..|.|+|+|++|+||++++... ..+.+||||+++++++. .+|+++++|+||.|||.|.|.+.+. ..|.|+
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~ 82 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELA 82 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEEE
Confidence 4688999999999999863100 01249999999998765 6999999999999999999999876 799999
Q ss_pred EEeCCCCCCCCCCCCceEEEEEeccccccC--ceeeeeEeeeecCCCCcccccEEEEEEEEEec
Q 004208 430 VFDNCHLHPGGAKDSRIGKVRIRLSTLETD--RIYTHSYPLVALLPNGVKKMGEVQLAVRFTCS 491 (768)
Q Consensus 430 v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 491 (768)
|||++.++ +|++||++.|+|.++..+ .....|++|. ..|+|+|+++|.+.
T Consensus 83 V~d~d~~~----~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 83 VFHDAPIG----YDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSGS 134 (136)
T ss_dssp EEECCSSS----SCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEEE
T ss_pred EEeCCCCC----CCCEEEEEEEEHHHhcccCCCCccEEEEcC--------CCeEEEEEEEEEec
Confidence 99999865 899999999999999874 3457899874 24999999999753
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-18 Score=163.80 Aligned_cols=127 Identities=14% Similarity=0.126 Sum_probs=103.3
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCc
Q 004208 37 QMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGD 115 (768)
Q Consensus 37 ~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~ 115 (768)
..+.|.|+|++|++|+..+..+.+||||+|++++++++|+++++|+||+|||+|.|.+.. ...|.|+|||+|.+ +|+
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~~~dd 111 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDV 111 (173)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCCE
T ss_pred CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCCCCCc
Confidence 467899999999999944444559999999999999999999999999999999999864 78999999999998 899
Q ss_pred eeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC-CccceEEEEEEEEccc
Q 004208 116 FIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG-SRARGELMFAIWFGTQ 165 (768)
Q Consensus 116 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~i~~~~~ 165 (768)
+||++.++|.++.............|++|....+ ....|+|.+++.+...
T Consensus 112 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~ 162 (173)
T 2nq3_A 112 LLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL 162 (173)
T ss_dssp EEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred eEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence 9999999999886442211111367999988643 2467999999887643
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-18 Score=157.97 Aligned_cols=118 Identities=27% Similarity=0.439 Sum_probs=101.8
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeEeeeecCCCCCeeeeEEEEEec---cCC
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIG---NYKGTTIPFEKKLNPEWNQVFAFTKE---RLQ 98 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~Wne~f~f~~~---~~~ 98 (768)
...+++.|+. +.+.|.|+|++|++|+..|..|.+||||++++. .++.+|+++++|.||+|||+|.|.+. ++.
T Consensus 14 ~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~ 91 (141)
T 2d8k_A 14 RIQFSVGYNF--QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVV 91 (141)
T ss_dssp EEEEEEEECS--SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHT
T ss_pred EEEEEEEEeC--CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcc
Confidence 5678888885 568999999999999999999999999999995 35789999999999999999999852 334
Q ss_pred CceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 99 AISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 99 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
...|.|+|||++.+ +|++||++.++|.++..+. ....|++|.+..+
T Consensus 92 ~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~~~ 138 (141)
T 2d8k_A 92 QRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQ-----MQTFWKDLKPSGP 138 (141)
T ss_dssp TSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTS-----CEEEEECCEECCC
T ss_pred cCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCC-----CccEEEECcCCCC
Confidence 67899999999998 8999999999999997653 2578999998643
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=152.46 Aligned_cols=119 Identities=15% Similarity=0.269 Sum_probs=100.0
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-C-
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN--YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-N- 113 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~- 113 (768)
...|.|+|++|++|+..|..|.+||||++++++ ++++|+++++|.||+|||+|.|.+... ..|.|+|||++.. +
T Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~~~ 81 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIHKK 81 (132)
T ss_dssp EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTTSS
T ss_pred eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCCCC
Confidence 467999999999999999999999999999985 789999999999999999999998765 3599999999987 4
Q ss_pred --CceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC---CccceEEEEEEEE
Q 004208 114 --GDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG---SRARGELMFAIWF 162 (768)
Q Consensus 114 --d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~---~~~~G~i~l~i~~ 162 (768)
|++||++.+++.++..... ...+|++|....+ ....|+|.+++..
T Consensus 82 ~~d~~lG~~~i~l~~l~~~~~----~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 82 QGAGFLGCVRLLSNAISRLKD----TGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp TTTTEEEEEEECHHHHHHHTT----SCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred CCCCceEEEEEeHHHhhcccc----cCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 8999999999888733221 1368999987632 2368999998754
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-18 Score=161.97 Aligned_cols=115 Identities=30% Similarity=0.481 Sum_probs=99.7
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe--------------eeEeeeecCCCCCeeeeEE
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNY--------------KGTTIPFEKKLNPEWNQVF 90 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~--------------~~~T~~~~~t~nP~Wne~f 90 (768)
...+++.|+ .+.|.|+|++|+||+..|..|.+||||++++++. +++|+++++|.||+|||+|
T Consensus 8 ~i~~~l~y~----~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f 83 (142)
T 1rh8_A 8 EIQLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTV 83 (142)
T ss_dssp EEEEEEEEE----TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEE
T ss_pred EEEEEEEEc----CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEE
Confidence 567888887 5799999999999999999999999999999863 4789999999999999999
Q ss_pred EEE-ec--cCCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC
Q 004208 91 AFT-KE--RLQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148 (768)
Q Consensus 91 ~f~-~~--~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 148 (768)
.|. +. ++....|.|+|||++.+ ++++||++.++|.++.... ...+||+|.+..
T Consensus 84 ~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 140 (142)
T 1rh8_A 84 IYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD-----NTPRWYPLKEQT 140 (142)
T ss_dssp EECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGT-----TCCEEEECBCCC
T ss_pred EECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCC-----CCCeEEECCccC
Confidence 997 43 34567999999999998 8999999999999986542 257999998764
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-18 Score=160.54 Aligned_cols=120 Identities=27% Similarity=0.478 Sum_probs=102.3
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeEeeeecCCCCCeeeeEEEEEe-c--
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYKGTTIPFEKKLNPEWNQVFAFTK-E-- 95 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~Wne~f~f~~-~-- 95 (768)
|...+++.|+. ..+.|.|+|++|++|+..|..|.+||||++++ +.++++|+++++|.||+|||+|.|.+ .
T Consensus 8 G~i~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~ 85 (141)
T 1v27_A 8 GQLSIKLWFDK--VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR 85 (141)
T ss_dssp CEEEEEEEEET--TTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTT
T ss_pred cEEEEEEEEeC--CCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHH
Confidence 35677888885 45899999999999999999999999999999 34678999999999999999999994 2
Q ss_pred cCCCceEEEEEEEcCCC-C--CceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc
Q 004208 96 RLQAISVELLVKDKMIV-N--GDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR 151 (768)
Q Consensus 96 ~~~~~~L~i~V~d~~~~-~--d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~ 151 (768)
++....|.|+|||++.+ + +++||++.++|.++.... ..+||+|.+...+.
T Consensus 86 ~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~------~~~W~~L~~~~~g~ 138 (141)
T 1v27_A 86 EFRERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQTHDSGP 138 (141)
T ss_dssp GGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS------EEEEEECBCCSSCC
T ss_pred HhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC------CCceEECcccccCC
Confidence 34468999999999998 5 999999999999986542 57999999876543
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.7e-18 Score=159.07 Aligned_cols=116 Identities=29% Similarity=0.438 Sum_probs=100.8
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeEeeeecCCCCCeeeeEEEEEec--cCCC
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIG---NYKGTTIPFEKKLNPEWNQVFAFTKE--RLQA 99 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~Wne~f~f~~~--~~~~ 99 (768)
...+++.|+. ..+.|.|+|++|+||+..|..+.+||||++++. .++++|+++++|.||+|||+|.|.+. ++..
T Consensus 30 ~l~~~l~y~~--~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~ 107 (152)
T 1rsy_A 30 KLQYSLDYDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG 107 (152)
T ss_dssp EEEEEEEEET--TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTT
T ss_pred EEEEEEEEeC--CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCC
Confidence 5678888875 468999999999999999989999999999995 36789999999999999999999875 3346
Q ss_pred ceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccC
Q 004208 100 ISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAK 147 (768)
Q Consensus 100 ~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 147 (768)
..|.|+|||++.+ +|++||++.++|.++..+. ...+|++|.++
T Consensus 108 ~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~ 151 (152)
T 1rsy_A 108 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQSA 151 (152)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSS-----CEEEEEECBCC
T ss_pred CEEEEEEEECCCCCCCcEEEEEEEEchhccCCC-----CcceEEECCCC
Confidence 8999999999998 8999999999999997653 25799999864
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.1e-18 Score=157.72 Aligned_cols=115 Identities=30% Similarity=0.443 Sum_probs=99.8
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeEeeeecCCCCCeeeeEEEEEec--cCCC
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIG---NYKGTTIPFEKKLNPEWNQVFAFTKE--RLQA 99 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~Wne~f~f~~~--~~~~ 99 (768)
...+++.|+. ..+.|.|+|++|++|+..|..+.+||||++++. .++++|+++++|.||+|||+|.|.+. ++..
T Consensus 22 ~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~ 99 (143)
T 3f04_A 22 KLQYSLDYDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG 99 (143)
T ss_dssp EEEEEEEEET--TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTT
T ss_pred EEEEEEEEeC--CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCC
Confidence 4567777774 568999999999999999988999999999994 46789999999999999999999975 4446
Q ss_pred ceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEccc
Q 004208 100 ISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEA 146 (768)
Q Consensus 100 ~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 146 (768)
..|.|+|||++.+ +|++||++.++|.++..+. ....|++|++
T Consensus 100 ~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~ 142 (143)
T 3f04_A 100 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQS 142 (143)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTS-----CEEEEEECBC
T ss_pred CEEEEEEEeCCCCCCCceEEEEEEEHHHccCCC-----CcceEEECcC
Confidence 8999999999998 9999999999999997653 2578999975
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=150.29 Aligned_cols=124 Identities=23% Similarity=0.300 Sum_probs=99.4
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC--eeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCC
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN--KWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLH 437 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~--~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~ 437 (768)
...|+|+|++|+||+++ |..|.+||||++++++ +.++|+++++++||.|||.|.|.+.++. .|.|+|||++.++
T Consensus 4 ~~~L~V~v~~a~~L~~~---d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~ 79 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKK---DFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIH 79 (132)
T ss_dssp EEEEEEEEEEEESCCCC---STTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTT
T ss_pred eEEEEEEEEEeECCCCC---CCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCC
Confidence 35699999999999985 6778999999999965 7899999999999999999999998764 4999999999864
Q ss_pred CCCCCCCceEEEEEeccccc-cCceeeeeEeeeecCCC-CcccccEEEEEEEE
Q 004208 438 PGGAKDSRIGKVRIRLSTLE-TDRIYTHSYPLVALLPN-GVKKMGEVQLAVRF 488 (768)
Q Consensus 438 ~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~-g~~~~G~i~l~~~~ 488 (768)
. ...|++||.+.|++.++. .+.....|++|....+. ..+..|+|+++++.
T Consensus 80 ~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 80 K-KQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp S-STTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred C-CCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 0 013899999999999883 22223478999765332 23457999999875
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=152.29 Aligned_cols=116 Identities=17% Similarity=0.328 Sum_probs=97.8
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeEeeeecCCCCCeeeeEEEEEec--cC
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN----YKGTTIPFEKKLNPEWNQVFAFTKE--RL 97 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~----~~~~T~~~~~t~nP~Wne~f~f~~~--~~ 97 (768)
|...+++.|+. ..+.|.|+|++|+ ++|..|.+||||++++.+ .+.+|+++++|+||+|||+|.|.+. ++
T Consensus 13 G~l~~sl~y~~--~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l 87 (138)
T 1wfm_A 13 PKLHYCLDYDC--QKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87 (138)
T ss_dssp CEEEEEEEEET--TTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSS
T ss_pred eEEEEEEEEeC--CCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHc
Confidence 35678888885 4689999999999 367889999999999942 3679999999999999999999975 34
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
....|.|+|||+|.+ +|++||++.++|.++..+. ...+|++|.+...
T Consensus 88 ~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~-----~~~~W~~L~~~~~ 135 (138)
T 1wfm_A 88 PTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPL-----GAAQWGELKTSGP 135 (138)
T ss_dssp TTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCT-----TCCEEEECCCCSC
T ss_pred CCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcc-----cccceeeCcCCCc
Confidence 467899999999998 9999999999999996442 3579999987643
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.6e-17 Score=149.74 Aligned_cols=120 Identities=23% Similarity=0.330 Sum_probs=102.0
Q ss_pred ccceEEEEEecCCCcccccCcccccCccccccccCCCCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEec---Cee
Q 004208 321 FASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYA---NKW 397 (768)
Q Consensus 321 ~~g~i~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g---~~~ 397 (768)
..|+|++.+.+. +..+.|+|+|++|+||+.+ +..|.+||||++++. .+.
T Consensus 11 ~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~ 62 (141)
T 2d8k_A 11 NLGRIQFSVGYN-------------------------FQESTLTVKIMKAQELPAK---DFSGTSDPFVKIYLLPDKKHK 62 (141)
T ss_dssp CCCEEEEEEEEC-------------------------SSSCCEEEEEEEEESCCCC---SSSSCCCEEEEEEEESCCSSE
T ss_pred eeeEEEEEEEEe-------------------------CCCCEEEEEEEEeECCCCC---CCCCCCCcEEEEEEECCCCcc
Confidence 468888888752 3345699999999999985 667899999999994 467
Q ss_pred eeeccccCCCCCccccEEEEEEeC----CCcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecC
Q 004208 398 VRTRTVVDSFDPKWNEQYTWEVYD----PYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALL 472 (768)
Q Consensus 398 ~~T~~~~~t~nP~wne~~~~~v~~----~~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 472 (768)
+||+++++++||.|||.|.|.+.. ....|.|+|||++.++ +|++||++.|+|.++..+.....||+|....
T Consensus 63 ~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~----~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~ 137 (141)
T 2d8k_A 63 LETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFS----RNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG 137 (141)
T ss_dssp EECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSS----SCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred EeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCCC----CCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence 999999999999999999998642 3568999999999865 8999999999999999888788999998653
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-17 Score=152.16 Aligned_cols=118 Identities=19% Similarity=0.277 Sum_probs=99.2
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEE-ec--cC
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVT-GTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFT-KE--RL 97 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~-~~--~~ 97 (768)
...+++.|+. ..+.|.|+|++|+||+..|.. |.+||||++++.+ ++++|+++++|.||+|||+|.|. +. ++
T Consensus 10 ~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~ 87 (138)
T 1ugk_A 10 TLFFSLEYNF--ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQI 87 (138)
T ss_dssp EEEEEEEEEG--GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTG
T ss_pred EEEEEEEEEC--CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHh
Confidence 4567777875 568999999999999999985 8999999999964 68899999999999999999995 53 33
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 148 (768)
....|.|+|||++.+ +|++||++.++|.++..... ....|++|....
T Consensus 88 ~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~----~~~~~~~l~~~~ 135 (138)
T 1ugk_A 88 QELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEG----KMLMNREIISGP 135 (138)
T ss_dssp GGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTC----CEEEEEECBSSS
T ss_pred ccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCC----cchhhhhhhcCC
Confidence 457999999999998 89999999999999976531 135679988754
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-17 Score=154.45 Aligned_cols=105 Identities=25% Similarity=0.362 Sum_probs=92.8
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEec---CeeeeeccccCCCCCccccEEEEEEeC---CCcEEEEEEEe
Q 004208 359 VIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYA---NKWVRTRTVVDSFDPKWNEQYTWEVYD---PYTVITLVVFD 432 (768)
Q Consensus 359 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g---~~~~~T~~~~~t~nP~wne~~~~~v~~---~~~~l~v~v~d 432 (768)
..+.|+|+|++|+||+.+ +..|.+||||++++. .+.+||+++++++||.|||.|.|.+.. ....|.|+|||
T Consensus 40 ~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 116 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 116 (152)
T ss_dssp TTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred CCCEEEEEEEEeECCCCc---cCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEE
Confidence 345799999999999985 667899999999993 467999999999999999999999874 35699999999
Q ss_pred CCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeee
Q 004208 433 NCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVA 470 (768)
Q Consensus 433 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 470 (768)
++.++ +|++||++.|+|.++..+....+||+|..
T Consensus 117 ~d~~~----~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 117 FDRFS----KHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp CCSSS----CCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred CCCCC----CCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 99865 89999999999999988888899999964
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-17 Score=155.77 Aligned_cols=118 Identities=21% Similarity=0.316 Sum_probs=99.6
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEe--cc
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTK--ER 96 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~--~~ 96 (768)
|...+++.|+.. .+.|.|+|++|++|+..| .|.+||||++++.+ .+.+|+++++|.||+|||+|.|.+ .+
T Consensus 14 G~~~lsL~y~~~--~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 90 (153)
T 3fbk_A 14 GAGQLRLSIDAQ--DRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEED 90 (153)
T ss_dssp CCCEEEEEEEES--SSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGG
T ss_pred CEEEEEEEEECC--CCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHH
Confidence 467888888864 689999999999999998 69999999999943 568999999999999999999998 45
Q ss_pred CCCceEEEEEEEcCCC-C-CceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 97 LQAISVELLVKDKMIV-N-GDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 97 ~~~~~L~i~V~d~~~~-~-d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
. ...|.|+|||++.+ + |++||++.++|.++.... .....|++|.+...
T Consensus 91 ~-~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~----~~~~~W~~L~~~~~ 140 (153)
T 3fbk_A 91 D-QKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPD----KEISGWYYLLGEHL 140 (153)
T ss_dssp T-TSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC------CCEEEEEECBCTTG
T ss_pred h-CCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCC----CccccEEECCChhh
Confidence 5 35699999999997 5 999999999999986421 12578999988653
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=154.28 Aligned_cols=116 Identities=22% Similarity=0.334 Sum_probs=99.7
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEE-ec--c
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFT-KE--R 96 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~-~~--~ 96 (768)
...+++.|+ ...+.|.|+|++|++|+..|..|.+||||++++++ .+++|+++++|.||+|||+|.|. +. +
T Consensus 17 ~l~~~l~y~--~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 94 (142)
T 2chd_A 17 ALEFSLLYD--QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED 94 (142)
T ss_dssp EEEEEEEEE--GGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHH
T ss_pred eEEEEEEEe--CCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHH
Confidence 567888887 35789999999999999999999999999999976 67899999999999999999998 53 3
Q ss_pred CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccC
Q 004208 97 LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAK 147 (768)
Q Consensus 97 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 147 (768)
+....|.|+|||++.+ +|++||++.++|.++..+. ....|++|+.+
T Consensus 95 ~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~-----~~~~~~~L~~p 141 (142)
T 2chd_A 95 MQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQ-----RKNFNICLERV 141 (142)
T ss_dssp HHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTC-----CEEEEEECBCC
T ss_pred ccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCC-----ccEEEEecccC
Confidence 3347899999999998 8999999999999997653 24678888754
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-17 Score=155.52 Aligned_cols=123 Identities=15% Similarity=0.185 Sum_probs=101.2
Q ss_pred CeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCC
Q 004208 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLH 437 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~ 437 (768)
...+.|+|+|++|++|+.. +..+.+||||+++++++.+||+++++++||.|||.|.|.+. +...|.|+|||++.++
T Consensus 33 ~~~~~L~V~V~~A~~L~~~---~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~ 108 (173)
T 2nq3_A 33 TMKSQLQITVISAKLKENK---KNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLK 108 (173)
T ss_dssp SCCEEEEEEEEEEEECCCC-----CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSS
T ss_pred CCceEEEEEEEEeECCCCc---ccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCCC
Confidence 3567899999999999843 33345999999999999999999999999999999999985 5779999999999865
Q ss_pred CCCCCCCceEEEEEeccccccCc-----eeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 438 PGGAKDSRIGKVRIRLSTLETDR-----IYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 438 ~~~~~d~~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
+|++||.+.|+|.++..+. ....|++|..... +.+..|+|.+.+++-
T Consensus 109 ----~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~-~~~~~G~L~v~l~~l 160 (173)
T 2nq3_A 109 ----SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKE-PTETIGDLSICLDGL 160 (173)
T ss_dssp ----CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSC-TTSEEEEEEEEEESE
T ss_pred ----CCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCC-CCcccEEEEEEEeee
Confidence 8999999999999987531 2357999987632 344569999888773
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=153.37 Aligned_cols=117 Identities=24% Similarity=0.323 Sum_probs=98.6
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec--cC
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE--RL 97 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~--~~ 97 (768)
...+++.|+. ..+.|.|+|++|+||+..|..| +||||++++.+ .+++|+++++|.||+|||+|.|.+. ++
T Consensus 12 ~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l 88 (142)
T 2dmg_A 12 QIQLTIRHSS--QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEV 88 (142)
T ss_dssp EEEEEEEEET--TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHH
T ss_pred eEEEEEEEeC--CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHh
Confidence 4577778874 4689999999999999999888 99999999953 5789999999999999999999974 33
Q ss_pred CCceEEEEEEEcCCC-C--CceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 98 QAISVELLVKDKMIV-N--GDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~--d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
....|.|+|||++.+ + +++||++.++|.++.... ...+|++|.+..+
T Consensus 89 ~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~-----~~~~W~~L~~~~~ 138 (142)
T 2dmg_A 89 QRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAK-----GWTQWYDLTEDSG 138 (142)
T ss_dssp HHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTT-----CBCCBCCCBCSCS
T ss_pred CcCEEEEEEEECCCccccCCcEEEEEEEecccccccc-----cccceeeccCCCC
Confidence 356899999999986 3 479999999999987653 3578999987643
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-17 Score=155.79 Aligned_cols=122 Identities=14% Similarity=0.309 Sum_probs=101.9
Q ss_pred cccceEEEEEecCCCcccccCcccccCccccccccCCCCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEec-----
Q 004208 320 RFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYA----- 394 (768)
Q Consensus 320 ~~~g~i~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g----- 394 (768)
...|+|++.+... +..|.|.|.|++|+||+.++ ...|.+||||+++++
T Consensus 7 ~~~G~l~~sl~y~-------------------------~~~~~L~V~v~~a~~L~~~d--~~~~~~dpyv~v~l~~~~~~ 59 (148)
T 3fdw_A 7 FVTGRIAFSLKYE-------------------------QQTQSLVVHVKECHQLAYAD--EAKKRSNPYVKTYLLPDKSR 59 (148)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCSB--TTTTBCCEEEEEEEETCCSG
T ss_pred ccceEEEEEEEEe-------------------------CCCCEEEEEEEEecCCCCcc--cCCCCCCeEEEEEEEcCCcc
Confidence 3568888888752 33567999999999999852 256899999999996
Q ss_pred CeeeeeccccCCCCCccccEEEEEEeCC---CcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeec
Q 004208 395 NKWVRTRTVVDSFDPKWNEQYTWEVYDP---YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVAL 471 (768)
Q Consensus 395 ~~~~~T~~~~~t~nP~wne~~~~~v~~~---~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 471 (768)
...++|+++++++||.|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|.++..+.....||+|...
T Consensus 60 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~----~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 135 (148)
T 3fdw_A 60 QGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFG----RNTFLGEAEIQMDSWKLDKKLDHCLPLHGK 135 (148)
T ss_dssp GGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGG----CEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred cCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCc----CCcEEEEEEEEcccccccCCccceEECcCc
Confidence 3478999999999999999999998753 347999999999865 899999999999999877777899999765
Q ss_pred C
Q 004208 472 L 472 (768)
Q Consensus 472 ~ 472 (768)
.
T Consensus 136 ~ 136 (148)
T 3fdw_A 136 I 136 (148)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-17 Score=154.75 Aligned_cols=105 Identities=19% Similarity=0.272 Sum_probs=90.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEec
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN------VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDK 271 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~------~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~ 271 (768)
+.|+|.|++|+||+.+|.+|.+||||++++.. .++||+++++ |+||+|||+|.|.+... ....|.|+|||+
T Consensus 43 ~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~-tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~ 121 (155)
T 2z0u_A 43 KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDA-SDTLVFNEVFWVSMSYPALHQKTLRVDVCTT 121 (155)
T ss_dssp TEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEEC-CSSEEEEEEEEEECCHHHHHHCEEEEEEEEE
T ss_pred CEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCC-CCCCccccEEEEEcCHHHhCcCEEEEEEEEC
Confidence 46999999999999999999999999999954 3789999997 99999999999997543 356799999999
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceeEEccc
Q 004208 272 LGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLER 308 (768)
Q Consensus 272 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~ 308 (768)
|..+++++||++.++|+++.. ......+||+|.+
T Consensus 122 d~~~~~d~iG~~~i~l~~l~~---~~~~~~~W~~L~~ 155 (155)
T 2z0u_A 122 DRSHLEECLGGAQISLAEVCR---SGERSTRWYNLLS 155 (155)
T ss_dssp CTTSCEEEEEEEEEECTTSCT---TCCCEEEEEEEBC
T ss_pred CCCCCCcEEEEEEEEHHHccC---CCCccccceEccC
Confidence 999999999999999999852 2345789999863
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.6e-18 Score=157.10 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=100.2
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEecc-
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQ-VTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKER- 96 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~- 96 (768)
|...+++.|+. ..+.|.|+|++|+||+..| ..|.+||||++++.+ .+++|+++++|.||+|||+|.|.+..
T Consensus 10 G~l~~sl~y~~--~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 87 (148)
T 3fdw_A 10 GRIAFSLKYEQ--QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPES 87 (148)
T ss_dssp CEEEEEEEEET--TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCST
T ss_pred eEEEEEEEEeC--CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChh
Confidence 35677788875 4689999999999999888 588999999999973 47899999999999999999999754
Q ss_pred -CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC
Q 004208 97 -LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG 149 (768)
Q Consensus 97 -~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 149 (768)
+....|.|+|||+|.+ +|++||++.++|.++..+. ...+|++|.++.+
T Consensus 88 ~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~~~ 137 (148)
T 3fdw_A 88 LLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDK-----KLDHCLPLHGKIS 137 (148)
T ss_dssp TGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHC-----CSEEEEECBCC--
T ss_pred HhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccC-----CccceEECcCccc
Confidence 3456899999999998 8999999999999986553 2479999998754
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.1e-17 Score=148.34 Aligned_cols=105 Identities=16% Similarity=0.255 Sum_probs=91.4
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe-----cCeeeeeccccCCCCCccccEEEEE-EeC---CCcEEEEE
Q 004208 359 VIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKY-----ANKWVRTRTVVDSFDPKWNEQYTWE-VYD---PYTVITLV 429 (768)
Q Consensus 359 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-----g~~~~~T~~~~~t~nP~wne~~~~~-v~~---~~~~l~v~ 429 (768)
..|.|+|.|++|+||+. +..|.+||||++++ +...+||+++++++||.|||+|.|. +.. ....|.|+
T Consensus 18 ~~~~L~V~V~~a~~L~~----~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~ 93 (134)
T 2b3r_A 18 RNGTLFIMVMHIKDLVT----EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLS 93 (134)
T ss_dssp ETTEEEEEEEEEECCCC----TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEE
T ss_pred cCCEEEEEEEEeeCCCC----CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEE
Confidence 34679999999999986 56788999999999 3467999999999999999999999 763 34699999
Q ss_pred EEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeec
Q 004208 430 VFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVAL 471 (768)
Q Consensus 430 v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 471 (768)
|||++.++ +|++||++.|+|+++..++....||+|...
T Consensus 94 V~d~d~~~----~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~ 131 (134)
T 2b3r_A 94 VLSAESLR----ENFFLGGITLPLKDFNLSKETVKWYQLTAA 131 (134)
T ss_dssp EEECCSSS----CCEEEEEEEEEGGGSCTTSCEEEEEECBC-
T ss_pred EEECCCCC----CCcEEEEEEEEhhhccCCCCcceeEECCCc
Confidence 99999865 789999999999999988888999999653
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-17 Score=157.94 Aligned_cols=114 Identities=22% Similarity=0.274 Sum_probs=97.3
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccCC
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQV-TGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERLQ 98 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~-~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~ 98 (768)
...+++.| ..+.|.|+|++|+||+..|. .|.+||||++++.+ .+++|+++++|.||+|||+|.|.+...
T Consensus 20 ~l~~~l~y----~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~- 94 (171)
T 2q3x_A 20 DIQIGMED----KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQ- 94 (171)
T ss_dssp EEEEEEEE----ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCT-
T ss_pred EEEEEEEE----CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCC-
Confidence 45677777 36899999999999999985 79999999999874 378999999999999999999998643
Q ss_pred CceEEEEEE-EcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC
Q 004208 99 AISVELLVK-DKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148 (768)
Q Consensus 99 ~~~L~i~V~-d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 148 (768)
...|.|+|| |+|.+ +|++||++.++|.++..+. ...+|++|.+..
T Consensus 95 ~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 141 (171)
T 2q3x_A 95 GKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSS-----MVIGWYKLFPPS 141 (171)
T ss_dssp TEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTS-----CEEEEEECBCGG
T ss_pred CCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCC-----CcceeEECCCcc
Confidence 689999999 99998 8999999999999997653 257999998764
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.5e-17 Score=150.50 Aligned_cols=121 Identities=16% Similarity=0.231 Sum_probs=99.2
Q ss_pred cccceEEEEEecCCCcccccCcccccCccccccccCCCCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC----
Q 004208 320 RFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN---- 395 (768)
Q Consensus 320 ~~~g~i~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~---- 395 (768)
...|+|++.+... +..+.|.|.|++|+||+++ +..| +||||++++.+
T Consensus 8 ~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~---d~~g-~dpyv~v~l~~~~~~ 58 (142)
T 2dmg_A 8 SPLGQIQLTIRHS-------------------------SQRNKLIVVVHACRNLIAF---SEDG-SDPYVRMYLLPDKRR 58 (142)
T ss_dssp CSSCEEEEEEEEE-------------------------TTTTEEEEEEEEEECCCCS---STTC-CCEEEEEEEESCCCS
T ss_pred CCcceEEEEEEEe-------------------------CCCCEEEEEEEEeECCCCC---CCCC-CCeeEEEEEEcCCCC
Confidence 4468888888752 2345799999999999986 5667 99999999943
Q ss_pred -eeeeeccccCCCCCccccEEEEEEeC---CCcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeec
Q 004208 396 -KWVRTRTVVDSFDPKWNEQYTWEVYD---PYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVAL 471 (768)
Q Consensus 396 -~~~~T~~~~~t~nP~wne~~~~~v~~---~~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 471 (768)
..++|+++++++||.|||.|.|.+.. ....|.|+|||++.++ ...|++||++.|+|.++..+....+||+|...
T Consensus 59 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~--~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~ 136 (142)
T 2dmg_A 59 SGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFL--SKDKGLLGKVLVALASEELAKGWTQWYDLTED 136 (142)
T ss_dssp SSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSS--CCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred CCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCcc--ccCCcEEEEEEEecccccccccccceeeccCC
Confidence 56899999999999999999999864 2348999999999764 11357999999999999877777899999754
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-17 Score=153.29 Aligned_cols=114 Identities=26% Similarity=0.460 Sum_probs=97.3
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEeccC-C
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKERL-Q 98 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~-~ 98 (768)
...+++.|. .+.|.|+|++|++|+..|..+.+||||++++++ .+++|+++++|.||+|||+|.|.+... .
T Consensus 21 ~l~~~l~~~----~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~ 96 (149)
T 1a25_A 21 RIYIQAHID----REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDK 96 (149)
T ss_dssp EEEEEEEES----SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGG
T ss_pred EEEEEEEec----CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccC
Confidence 345566663 478999999999999999899999999999973 578999999999999999999998643 2
Q ss_pred CceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC
Q 004208 99 AISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148 (768)
Q Consensus 99 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 148 (768)
...|.|+|||++.+ +|++||++.|+|.++..+. ..+||+|.+..
T Consensus 97 ~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~------~~~W~~L~~~~ 141 (149)
T 1a25_A 97 DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG------VDGWFKLLSQE 141 (149)
T ss_dssp GCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTCC------EEEEEECBCHH
T ss_pred CCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcCc------cCCeEEccCCC
Confidence 46899999999998 8999999999999987641 57899998653
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-17 Score=151.28 Aligned_cols=104 Identities=25% Similarity=0.370 Sum_probs=92.4
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe---cCeeeeeccccCCCCCccccEEEEEEeCC---CcEEEEEEEe
Q 004208 359 VIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKY---ANKWVRTRTVVDSFDPKWNEQYTWEVYDP---YTVITLVVFD 432 (768)
Q Consensus 359 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~---g~~~~~T~~~~~t~nP~wne~~~~~v~~~---~~~l~v~v~d 432 (768)
..+.|.|+|++|+||+.+ +..+.+||||++++ +.+.++|++++++.||.|||.|.|.+... ...|.|+|||
T Consensus 32 ~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 108 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 108 (143)
T ss_dssp TTTEEEEEEEEEECCCCB---GGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred CCCEEEEEEEEecCCCCC---CCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEe
Confidence 446799999999999985 56788999999999 45689999999999999999999998742 4699999999
Q ss_pred CCCCCCCCCCCCceEEEEEeccccccCceeeeeEeee
Q 004208 433 NCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLV 469 (768)
Q Consensus 433 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 469 (768)
++.++ +|++||++.|+|.++..+....+||+|.
T Consensus 109 ~d~~~----~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 141 (143)
T 3f04_A 109 FDRFS----KHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CCSSS----CCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred CCCCC----CCceEEEEEEEHHHccCCCCcceEEECc
Confidence 99865 8999999999999999988889999985
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.7e-17 Score=149.35 Aligned_cols=107 Identities=22% Similarity=0.370 Sum_probs=90.5
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe-----cCeeeeeccccCCCCCccccEEEEEEeC----CCcEEEEEE
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKY-----ANKWVRTRTVVDSFDPKWNEQYTWEVYD----PYTVITLVV 430 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-----g~~~~~T~~~~~t~nP~wne~~~~~v~~----~~~~l~v~v 430 (768)
.+.|+|.|++|+||+.+ +..|.+||||++++ +.+.+||+++++++||.|||.|.|.+.. ....|.|+|
T Consensus 20 ~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V 96 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITL 96 (141)
T ss_dssp TTEEEEEEEEEESCCCC---SSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEE
T ss_pred CCEEEEEEEEccCCCCc---CCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEE
Confidence 35799999999999985 67789999999999 4577999999999999999999999542 236999999
Q ss_pred EeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecC
Q 004208 431 FDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALL 472 (768)
Q Consensus 431 ~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 472 (768)
||++.++ .++|++||++.|+|.++..+. ..+||+|....
T Consensus 97 ~d~d~~~--~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~ 135 (141)
T 1v27_A 97 WDQARVR--EEESEFLGEILIELETALLDD-EPHWYKLQTHD 135 (141)
T ss_dssp EEBCSSS--SCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCS
T ss_pred EECCCCc--CCCCceEEEEEEEccccCCCC-CCceEECcccc
Confidence 9999865 113899999999999987655 68999997654
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=9.3e-17 Score=146.32 Aligned_cols=102 Identities=25% Similarity=0.437 Sum_probs=84.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEeeecccCCCCCCcccceEEEEecC---CCCCcEEEEEEec
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIF-----GNVVLKTTVSAKKTVNPTWNEDLMFVAAE---PFDDPLILTVEDK 271 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~l-----g~~~~~T~~i~~~t~nP~wne~f~f~~~~---~~~~~L~i~V~d~ 271 (768)
+.|.|+|++|++|+.++..+.+||||++++ +.++++|+++++ +.||.|||+|.|.+.. .....|.|+|||+
T Consensus 18 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~ 96 (129)
T 2bwq_A 18 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 96 (129)
T ss_dssp TEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSS-BSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccC-CCCCccccEEEEccCCHHHhcCCeEEEEEEEC
Confidence 469999999999999999999999999999 457899999997 9999999999998532 2356899999999
Q ss_pred cCCCC--CceeEEEEEeccccccccCCCCCCceeEEcc
Q 004208 272 LGDNK--EECLGRLVLPLSKAGKRFLPLPAAAIWYNLE 307 (768)
Q Consensus 272 d~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 307 (768)
+..++ +++||++.++|.++... ...+||+|+
T Consensus 97 d~~~~~~~~~lG~~~i~l~~l~~~-----~~~~W~~Lq 129 (129)
T 2bwq_A 97 ARVREEESEFLGEILIELETALLD-----DEPHWYKLQ 129 (129)
T ss_dssp -------CEEEEEEEEEGGGCCCS-----SCEEEEECC
T ss_pred CcCcCcCCceeEEEEEEccccCCC-----cCCccEECc
Confidence 98876 99999999999998742 278999985
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.69 E-value=6.1e-17 Score=152.13 Aligned_cols=107 Identities=25% Similarity=0.346 Sum_probs=91.2
Q ss_pred CeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEec-----CeeeeeccccCCCCCccccEEEEEEe--CCCcEEEEEE
Q 004208 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYA-----NKWVRTRTVVDSFDPKWNEQYTWEVY--DPYTVITLVV 430 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g-----~~~~~T~~~~~t~nP~wne~~~~~v~--~~~~~l~v~v 430 (768)
+..|.|.|+|++|+||+++ + .|.+||||++++. ...++|+++++++||.|||.|.|.+. +....|.|+|
T Consensus 24 ~~~~~L~V~v~~a~~L~~~---d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V 99 (153)
T 3fbk_A 24 AQDRVLLLHIIEGKGLISK---Q-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTV 99 (153)
T ss_dssp ESSSEEEEEEEEEESCCCC---S-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEE
T ss_pred CCCCEEEEEEEEeeCCCCC---C-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEE
Confidence 3456799999999999985 4 4889999999993 35699999999999999999999994 4556799999
Q ss_pred EeCCCCCCCCCC-CCceEEEEEecccccc-CceeeeeEeeeecC
Q 004208 431 FDNCHLHPGGAK-DSRIGKVRIRLSTLET-DRIYTHSYPLVALL 472 (768)
Q Consensus 431 ~d~~~~~~~~~~-d~~lG~~~i~l~~l~~-~~~~~~~~~L~~~~ 472 (768)
||++.++ + |++||.+.|+|.++.. +.....||+|....
T Consensus 100 ~d~d~~~----~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~ 139 (153)
T 3fbk_A 100 WNRASQS----RQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEH 139 (153)
T ss_dssp EECCSSG----GGCEEEEEEEEEHHHHTC--CCEEEEEECBCTT
T ss_pred EeCCCCC----CCCcEEEEEEEEHHHhcCCCCccccEEECCChh
Confidence 9999854 5 8999999999999985 67788999997653
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=151.47 Aligned_cols=101 Identities=27% Similarity=0.368 Sum_probs=89.7
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEecc--C
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKER--L 97 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~--~ 97 (768)
...+++.|+. ..+.|.|+|++|++|+..|..|.+||||++++++ .+++|+++++|.||+|||+|.|.+.. +
T Consensus 25 ~l~~~l~y~~--~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l 102 (166)
T 2cm5_A 25 KILVSLMYST--QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDL 102 (166)
T ss_dssp EEEEEEEEET--TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred eEEEEEEEEC--CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhc
Confidence 4567777764 5789999999999999999999999999999986 57899999999999999999999853 3
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCC
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDI 127 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l 127 (768)
....|.|+|||++.+ ++++||++.+++..+
T Consensus 103 ~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~ 133 (166)
T 2cm5_A 103 AKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133 (166)
T ss_dssp GGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred CCCEEEEEEEECCCCCCCcEEEeEEEecccC
Confidence 467999999999998 899999999999986
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.5e-17 Score=151.46 Aligned_cols=118 Identities=23% Similarity=0.286 Sum_probs=98.3
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCC-CC------CCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEE
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVN-QV------TGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFT 93 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~-d~------~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~ 93 (768)
|...+++.|+. ..+.|.|+|++|+||+.. |. .|.+||||++++.+ ++++|++++++.||+|||+|.|.
T Consensus 13 G~l~~~l~y~~--~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~ 90 (147)
T 2enp_A 13 GMLHFSTQYDL--LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFE 90 (147)
T ss_dssp CEEEEEEEEET--TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEEC
T ss_pred eEEEEEEEEcC--CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEE
Confidence 35678888885 468999999999999984 43 35899999999973 57899999999999999999999
Q ss_pred ecc--CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC
Q 004208 94 KER--LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148 (768)
Q Consensus 94 ~~~--~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 148 (768)
+.. +....|.|+|||++.+ ++++||++.++|.++.... ....|+.|.+..
T Consensus 91 v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~~ 143 (147)
T 2enp_A 91 IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVK-----GGHWWKALIPSG 143 (147)
T ss_dssp CCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTT-----CCCEEECCBCCC
T ss_pred eChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCC-----CccEEEEeecCC
Confidence 753 3356899999999998 8999999999999996653 246899998653
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=147.37 Aligned_cols=102 Identities=31% Similarity=0.481 Sum_probs=89.1
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEecc--C
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKER--L 97 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~--~ 97 (768)
...+++.|+. ..+.|.|+|++|++|+..|..|.+||||++++++ .+.+|+++++|.||+|||+|.|.+.. +
T Consensus 4 ~l~~sl~y~~--~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l 81 (138)
T 3n5a_A 4 ELLLSLCYNP--SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKL 81 (138)
T ss_dssp EEEEEEEEET--TTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGG
T ss_pred EEEEEEEEcC--CCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhc
Confidence 4567777774 5689999999999999999999999999999974 47899999999999999999999754 3
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCC
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIP 128 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~ 128 (768)
....|.|+|||++.+ +|++||++.+++.++.
T Consensus 82 ~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 82 RETTIIITVMDKDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp GGEEEEEEEEECCSSSCCEEEEEEEESSSSCH
T ss_pred CceEEEEEEEECCCCCCCcEEEEEEEccccCC
Confidence 347899999999998 8999999999998753
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=150.03 Aligned_cols=120 Identities=25% Similarity=0.368 Sum_probs=97.4
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEecc--C
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKER--L 97 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~--~ 97 (768)
...+++.|+. ..+.|.|+|++|+||+..|..|.+||||++++++ .+.+|+++++|.||+|||+|.|.+.. +
T Consensus 13 ~l~~~l~y~~--~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l 90 (159)
T 1tjx_A 13 DICFSLRYVP--TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQI 90 (159)
T ss_dssp EEEEEEEEET--TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred eEEEEEEEcC--CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHh
Confidence 4567777774 4689999999999999999999999999999963 46899999999999999999999753 3
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCC--------CCCCCCCCCeEEEcccC
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKR--------VPPDSPLAPEWKRLEAK 147 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~--------~~~~~~~~~~w~~L~~~ 147 (768)
....|.|+|||++.+ +|++||++.|++..+..+ ..+ .....+|++|.+.
T Consensus 91 ~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~-~~~~~~W~~L~~~ 148 (159)
T 1tjx_A 91 QKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANP-RRPIAQWHTLQVE 148 (159)
T ss_dssp GGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHST-TCCEEEEEECBCH
T ss_pred CCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCC-CCeeeeEEECcCc
Confidence 457899999999998 899999999999864110 001 1234689988764
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-16 Score=144.60 Aligned_cols=117 Identities=17% Similarity=0.144 Sum_probs=97.3
Q ss_pred cccceEEEEEecCCCcccccCcccccCccccccccCCCCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC----
Q 004208 320 RFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN---- 395 (768)
Q Consensus 320 ~~~g~i~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~---- 395 (768)
...|+|++.+... +..+.|+|+|++|++ + +..|.+||||++++.+
T Consensus 10 ~~~G~l~~sl~y~-------------------------~~~~~L~V~v~~a~~---~---d~~g~sDPyv~v~l~~~~~~ 58 (138)
T 1wfm_A 10 NQAPKLHYCLDYD-------------------------CQKAELFVTRLEAVT---S---NHDGGCDCYVQGSVANRTGS 58 (138)
T ss_dssp SSCCEEEEEEEEE-------------------------TTTTEEEEEEEEEEC---C---CCSSCCCEEEEEEEEETTEE
T ss_pred CcceEEEEEEEEe-------------------------CCCCEEEEEEEEEEc---C---CCCCCcceEEEEEEEcCCCc
Confidence 3468888888752 234579999999993 2 6778999999999932
Q ss_pred eeeeeccccCCCCCccccEEEEEEeCC---CcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeec
Q 004208 396 KWVRTRTVVDSFDPKWNEQYTWEVYDP---YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVAL 471 (768)
Q Consensus 396 ~~~~T~~~~~t~nP~wne~~~~~v~~~---~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 471 (768)
..++|+++++++||.|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|.++..+.....||+|...
T Consensus 59 ~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~----~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~ 133 (138)
T 1wfm_A 59 VEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFS----RHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp EEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSC----TTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred ccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCC----CCcEEEEEEEEcccccCcccccceeeCcCC
Confidence 358999999999999999999998753 458999999999866 899999999999999866667899999754
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=6.9e-17 Score=149.83 Aligned_cols=104 Identities=26% Similarity=0.401 Sum_probs=90.3
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe--------------eeeeccccCCCCCccccEEEEE-EeC---C
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANK--------------WVRTRTVVDSFDPKWNEQYTWE-VYD---P 422 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~--------------~~~T~~~~~t~nP~wne~~~~~-v~~---~ 422 (768)
|.|.|+|++|+||+++ +..|.+||||++++++. .+||+++++++||.|||.|.|. +.. .
T Consensus 18 ~~L~V~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~ 94 (142)
T 1rh8_A 18 GNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLM 94 (142)
T ss_dssp TEEEEEEEEEESCCCC---SSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHT
T ss_pred CEEEEEEEEecCCCCC---CCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHcc
Confidence 4699999999999985 67789999999999763 5899999999999999999997 542 3
Q ss_pred CcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeec
Q 004208 423 YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVAL 471 (768)
Q Consensus 423 ~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 471 (768)
...|.|+|||++.++ +|++||.+.|+|+++..+.....||+|...
T Consensus 95 ~~~l~i~V~d~d~~~----~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~ 139 (142)
T 1rh8_A 95 KKTLEVTVWDYDRFS----SNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp TCEEEEEEEEECSSS----CEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred CCEEEEEEEECCCCC----CCceEEEEEEeccccccCCCCCeEEECCcc
Confidence 569999999999865 899999999999999877667899999653
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-16 Score=147.76 Aligned_cols=120 Identities=26% Similarity=0.355 Sum_probs=99.2
Q ss_pred cccceEEEEEecCCCcccccCcccccCccccccccCCCCeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC----
Q 004208 320 RFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN---- 395 (768)
Q Consensus 320 ~~~g~i~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~---- 395 (768)
...|+|++.+... +..|.|.|+|++|+||+.+ +..|.+||||++++++
T Consensus 9 ~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~l~~~~~~ 60 (159)
T 1tjx_A 9 EKLGDICFSLRYV-------------------------PTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKR 60 (159)
T ss_dssp GCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEEETTEE
T ss_pred CcCCeEEEEEEEc-------------------------CCCCEEEEEEEEeeCCCCc---cCCCCCCeEEEEEEEeCCce
Confidence 4568898888752 3456799999999999985 6778999999999953
Q ss_pred -eeeeeccccCCCCCccccEEEEEEeCC---CcEEEEEEEeCCCCCCCCCCCCceEEEEEecccc------------ccC
Q 004208 396 -KWVRTRTVVDSFDPKWNEQYTWEVYDP---YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTL------------ETD 459 (768)
Q Consensus 396 -~~~~T~~~~~t~nP~wne~~~~~v~~~---~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l------------~~~ 459 (768)
..+||+++++++||.|||.|.|.+... ...|.|+|||++.++ +|++||.+.|++..+ .++
T Consensus 61 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~----~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~ 136 (159)
T 1tjx_A 61 LKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG----KNDAIGKVFVGYNSTGAELRHWSDMLANPR 136 (159)
T ss_dssp EEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS----CCEEEEEEEEETTCCHHHHHHHHHHHHSTT
T ss_pred eceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCC----CCceEEEEEECCCCCCcHHHHHHHHHHCCC
Confidence 468999999999999999999998753 358999999999865 899999999999964 234
Q ss_pred ceeeeeEeeeec
Q 004208 460 RIYTHSYPLVAL 471 (768)
Q Consensus 460 ~~~~~~~~L~~~ 471 (768)
+....||+|...
T Consensus 137 ~~~~~W~~L~~~ 148 (159)
T 1tjx_A 137 RPIAQWHTLQVE 148 (159)
T ss_dssp CCEEEEEECBCH
T ss_pred CeeeeEEECcCc
Confidence 567899999754
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.2e-16 Score=142.56 Aligned_cols=107 Identities=20% Similarity=0.220 Sum_probs=89.9
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEeeecccCCCCCCcccceEEEE-ecCC--CCCcEEEEEEecc
Q 004208 200 WYLRVNVIEAQDLVPKQRN-RNPEVFIKAIFG---NVVLKTTVSAKKTVNPTWNEDLMFV-AAEP--FDDPLILTVEDKL 272 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~-~~~dpyV~v~lg---~~~~~T~~i~~~t~nP~wne~f~f~-~~~~--~~~~L~i~V~d~d 272 (768)
+.|.|+|++|++|+.+|.. +.+||||++.+. .+.++|+++++ ++||+|||+|.|. +... ....|.|+|||+|
T Consensus 22 ~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d 100 (138)
T 1ugk_A 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRK-TLDPAFDETFTFYGIPYTQIQELALHFTILSFD 100 (138)
T ss_dssp TEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSS-CSSCEEEEEEEEECCCSTTGGGCEEEEEEEEEC
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcC-CCCCcEeeEEEEcCcCHHHhccCEEEEEEEECC
Confidence 4699999999999999985 899999999994 47899999997 9999999999995 5432 3468999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEcccCc
Q 004208 273 GDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNI 310 (768)
Q Consensus 273 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~ 310 (768)
..+++++||++.++|.++... ......|++|....
T Consensus 101 ~~~~~~~lG~~~i~l~~l~~~---~~~~~~~~~l~~~~ 135 (138)
T 1ugk_A 101 RFSRDDIIGEVLIPLSGIELS---EGKMLMNREIISGP 135 (138)
T ss_dssp SSCCCCCCEEEEEECTTCCCT---TCCEEEEEECBSSS
T ss_pred CCCCCcEEEEEEEehhHccCC---CCcchhhhhhhcCC
Confidence 999999999999999998732 22345678888753
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=148.59 Aligned_cols=101 Identities=28% Similarity=0.387 Sum_probs=82.6
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--Ce---eeEeeeecCCCCCeeeeEEEEEeccC-
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIG--NY---KGTTIPFEKKLNPEWNQVFAFTKERL- 97 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~--~~---~~~T~~~~~t~nP~Wne~f~f~~~~~- 97 (768)
|...+++.|+. ..+.|.|+|++|++|+..|..|.+||||++++. +. +++|+++++|.||+|||+|.|.+...
T Consensus 17 G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 94 (153)
T 1w15_A 17 GELLVSLCYQS--TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCES 94 (153)
T ss_dssp CEEEEEEEEET--TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSS
T ss_pred cEEEEEEEEcC--CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHH
Confidence 34567777774 468999999999999999989999999999994 32 67999999999999999999997643
Q ss_pred -CCceEEEEEEEcCCC-CCceeEEEEEcCCC
Q 004208 98 -QAISVELLVKDKMIV-NGDFIGKIKIDMPD 126 (768)
Q Consensus 98 -~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~ 126 (768)
....|.|+|||++.+ ++++||++.+++..
T Consensus 95 l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 95 LEEISVEFLVLDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp STTEEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred hCceEEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence 357899999999998 89999999999987
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-16 Score=144.46 Aligned_cols=102 Identities=23% Similarity=0.351 Sum_probs=84.7
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeCCC---cEEEEEE
Q 004208 359 VIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYDPY---TVITLVV 430 (768)
Q Consensus 359 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~~~---~~l~v~v 430 (768)
..|.|.|.|++|+||+.+ +..|.+||||++++++ ..++|++++++.||.|||.|.|.+.... ..|.|+|
T Consensus 14 ~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V 90 (138)
T 3n5a_A 14 SANSIIVNIIKARNLKAM---DIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITV 90 (138)
T ss_dssp TTTEEEEEEEEEESCCCC---BTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEE
T ss_pred CCCeEEEEEEEeeCCCCc---CCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEE
Confidence 446799999999999985 6678999999999964 4689999999999999999999987543 5899999
Q ss_pred EeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeee
Q 004208 431 FDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLV 469 (768)
Q Consensus 431 ~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 469 (768)
||++.++ +|++||.+.|+|.++..+. .+|++|.
T Consensus 91 ~d~~~~~----~~~~lG~~~i~l~~~~~~~--~~W~~l~ 123 (138)
T 3n5a_A 91 MDKDKLS----RNDVIGKIYLSWKSGPGEV--KHWKDMI 123 (138)
T ss_dssp EECCSSS----CCEEEEEEEESSSSCHHHH--HHHHHHH
T ss_pred EECCCCC----CCcEEEEEEEccccCChHH--HHHHHHH
Confidence 9999865 8999999999999765322 3444443
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-16 Score=146.23 Aligned_cols=105 Identities=25% Similarity=0.395 Sum_probs=90.6
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEE-EeCC---CcEEEEE
Q 004208 359 VIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWE-VYDP---YTVITLV 429 (768)
Q Consensus 359 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~-v~~~---~~~l~v~ 429 (768)
..+.|+|+|++|+||+.+ +..|.+||||++++++ ..+||+++++++||.|||.|.|. +... ...|.|+
T Consensus 27 ~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~ 103 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPM---DSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRIS 103 (142)
T ss_dssp GGTEEEEEEEEEESCCCC---CTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEE
T ss_pred CCCEEEEEEEEecCCCCC---CCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEE
Confidence 446799999999999985 6678999999999975 67999999999999999999998 5432 3589999
Q ss_pred EEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeee
Q 004208 430 VFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVA 470 (768)
Q Consensus 430 v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 470 (768)
|||++.++ +|++||.+.|+|.++..++....|++|..
T Consensus 104 V~d~d~~~----~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 140 (142)
T 2chd_A 104 VCDEDKFG----HNEFIGETRFSLKKLKANQRKNFNICLER 140 (142)
T ss_dssp EEEECTTS----CEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred EEECCCCC----CCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence 99999865 78999999999999998887777887753
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-16 Score=146.40 Aligned_cols=123 Identities=17% Similarity=0.198 Sum_probs=99.9
Q ss_pred cccceEEEEEecCCCcccccCcccccCccccccccCCCCeeeEEEEEEEEecCCCCC-CCC---CCCCCcCcEEEEEec-
Q 004208 320 RFASRICLRFSLDGGYHVFDEATNYSSDLRSTMKQLWPPVIGVLELGILSAKELLPM-KSR---DGRGTTDAYCVAKYA- 394 (768)
Q Consensus 320 ~~~g~i~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~l~v~v~~a~~L~~~-~~~---~~~g~~dpyv~v~~g- 394 (768)
...|+|++.+.+. +..|.|+|+|++|+||+.. +.. +..|.+||||+++++
T Consensus 10 ~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~ 64 (147)
T 2enp_A 10 YQLGMLHFSTQYD-------------------------LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLP 64 (147)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEET
T ss_pred CcceEEEEEEEEc-------------------------CCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEe
Confidence 4568888888752 3346799999999999973 211 224689999999996
Q ss_pred --CeeeeeccccCCCCCccccEEEEEEeCC---CcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeee
Q 004208 395 --NKWVRTRTVVDSFDPKWNEQYTWEVYDP---YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLV 469 (768)
Q Consensus 395 --~~~~~T~~~~~t~nP~wne~~~~~v~~~---~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 469 (768)
.+.+||+++++++||.|||.|.|.+... ...|.|+|||++.++ +|++||.+.|+|.++..+.....||+|.
T Consensus 65 ~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~----~~~~iG~~~i~l~~l~~~~~~~~w~~L~ 140 (147)
T 2enp_A 65 DQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFS----RHCVIGKVSVPLCEVDLVKGGHWWKALI 140 (147)
T ss_dssp CCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTC----CSCCCEEEEEETTTSCTTTCCCEEECCB
T ss_pred CCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCc----CCcEEEEEEEechhcCCCCCccEEEEee
Confidence 3578999999999999999999998742 358999999999865 7899999999999998776667899986
Q ss_pred ec
Q 004208 470 AL 471 (768)
Q Consensus 470 ~~ 471 (768)
..
T Consensus 141 ~~ 142 (147)
T 2enp_A 141 PS 142 (147)
T ss_dssp CC
T ss_pred cC
Confidence 43
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-16 Score=151.53 Aligned_cols=104 Identities=20% Similarity=0.350 Sum_probs=91.3
Q ss_pred eEEEEEEEEecCCCCCCCCCC-CCCcCcEEEEEecC-----eeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEE-eC
Q 004208 361 GVLELGILSAKELLPMKSRDG-RGTTDAYCVAKYAN-----KWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVF-DN 433 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~-~g~~dpyv~v~~g~-----~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~-d~ 433 (768)
|.|.|+|++|+||+++ |. .|.+||||++++++ ..+||+++++++||+|||+|.|.+......|.|+|| |+
T Consensus 30 ~~L~V~v~~a~~L~~~---d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~ 106 (171)
T 2q3x_A 30 GQLEVEVIRARSLTQK---PGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDY 106 (171)
T ss_dssp TEEEEEEEEEESCCCC---C---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEEC
T ss_pred CEEEEEEEEeeCCCCC---CcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcC
Confidence 4699999999999985 54 68999999999954 378999999999999999999998766679999999 99
Q ss_pred CCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeec
Q 004208 434 CHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVAL 471 (768)
Q Consensus 434 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 471 (768)
+.++ +|++||.+.|+|.++..+....+||+|...
T Consensus 107 d~~~----~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 107 GRMD----HKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp STTC----SSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCCC----CCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 9865 889999999999999988788999999765
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-16 Score=146.42 Aligned_cols=103 Identities=23% Similarity=0.427 Sum_probs=90.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEec-----CeeeeeccccCCCCCccccEEEEEEeCC--CcEEEEEEEeC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYA-----NKWVRTRTVVDSFDPKWNEQYTWEVYDP--YTVITLVVFDN 433 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g-----~~~~~T~~~~~t~nP~wne~~~~~v~~~--~~~l~v~v~d~ 433 (768)
+.|+|+|++|+||+.+ +..|.+||||+++++ ...+||+++++++||.|||+|.|.+... ...|.|+|||+
T Consensus 31 ~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~ 107 (149)
T 1a25_A 31 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW 107 (149)
T ss_dssp SEEEEEEEEEESCCCC---STTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred CEEEEEEEEeeCCCCC---CCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEEC
Confidence 4699999999999985 677899999999996 3579999999999999999999999763 45899999999
Q ss_pred CCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeec
Q 004208 434 CHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVAL 471 (768)
Q Consensus 434 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 471 (768)
+.++ +|++||.+.|+|.++..+. ..+||+|...
T Consensus 108 d~~~----~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 140 (149)
T 1a25_A 108 DLTS----RNDFMGSLSFGISELQKAG-VDGWFKLLSQ 140 (149)
T ss_dssp CSSS----CCEEEEEEEEEHHHHTTCC-EEEEEECBCH
T ss_pred CCCC----CCCEEEEEEEEHHHhCcCc-cCCeEEccCC
Confidence 9865 8999999999999998764 6899999754
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-16 Score=142.84 Aligned_cols=87 Identities=22% Similarity=0.344 Sum_probs=73.3
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeee-cCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CC
Q 004208 37 QMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPF-EKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NG 114 (768)
Q Consensus 37 ~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~-~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d 114 (768)
.++.|.|+|++|++|.. .|.+||||+++ ++..+|+++ .+|.||+|||+|.|.+.+. ...|.|+|||+| . +|
T Consensus 3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~~~d 75 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-LIWD 75 (131)
T ss_dssp CCEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-SSCE
T ss_pred cceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-CCCC
Confidence 36899999999998852 67899999999 333455554 4799999999999999865 567999999999 6 99
Q ss_pred ceeEEEEEcCCCCCCC
Q 004208 115 DFIGKIKIDMPDIPKR 130 (768)
Q Consensus 115 ~~lG~~~i~l~~l~~~ 130 (768)
++||++.|+|.++...
T Consensus 76 d~iG~~~i~l~~l~~~ 91 (131)
T 2cjt_A 76 TMVGTVWIPLRTIRQS 91 (131)
T ss_dssp EEEEEEEEEGGGSCBC
T ss_pred CeEEEEEEEHHHhhhc
Confidence 9999999999998654
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=145.59 Aligned_cols=109 Identities=23% Similarity=0.303 Sum_probs=89.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEecc
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN-----VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKL 272 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~-----~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d 272 (768)
+.|.|+|++|++|+.+|.++.+||||++++++ +.++|+++++ ++||+|||+|.|.+... ....|.|+|||++
T Consensus 37 ~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d 115 (166)
T 2cm5_A 37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK-TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD 115 (166)
T ss_dssp TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCS-CSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred CEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccC-CCCCcccceEEEEcchHhcCCCEEEEEEEECC
Confidence 46999999999999999999999999999964 6889999997 99999999999998643 3568999999999
Q ss_pred CCCCCceeEEEEEecccccccc--------CCCCCCceeEEcccC
Q 004208 273 GDNKEECLGRLVLPLSKAGKRF--------LPLPAAAIWYNLERN 309 (768)
Q Consensus 273 ~~~~d~~lG~~~i~l~~l~~~~--------~~~~~~~~w~~L~~~ 309 (768)
..+++++||++.+++.++.... .++....+|+.|.+.
T Consensus 116 ~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~~~ 160 (166)
T 2cm5_A 116 IGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQNE 160 (166)
T ss_dssp SSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECBC-
T ss_pred CCCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcceEeeECCCc
Confidence 9989999999999998864210 123445566666654
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=142.34 Aligned_cols=89 Identities=25% Similarity=0.255 Sum_probs=74.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe---EEeeecccCCCCCCcccceEEEEecCCC--CCcEEEEEEecc
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIF--GNV---VLKTTVSAKKTVNPTWNEDLMFVAAEPF--DDPLILTVEDKL 272 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~l--g~~---~~~T~~i~~~t~nP~wne~f~f~~~~~~--~~~L~i~V~d~d 272 (768)
+.|.|+|++|++|+..+..+.+||||++++ ++. +++|+++++ ++||+|||+|.|.+.... ...|.|+|||++
T Consensus 30 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d 108 (153)
T 1w15_A 30 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC-TPNAVFNELFVFDIPCESLEEISVEFLVLDSE 108 (153)
T ss_dssp TEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCS-CSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred CEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccC-CCCCeecceEEEECCHHHhCceEEEEEEEeCC
Confidence 469999999999999998899999999999 433 679999997 999999999999986542 357999999999
Q ss_pred CCCCCceeEEEEEeccc
Q 004208 273 GDNKEECLGRLVLPLSK 289 (768)
Q Consensus 273 ~~~~d~~lG~~~i~l~~ 289 (768)
..+++++||++.+++++
T Consensus 109 ~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 109 RGSRNEVIGRLVLGATA 125 (153)
T ss_dssp TTSCCEEEEEEEESTTC
T ss_pred CCCCCcEEEEEEECCCC
Confidence 98899999999999987
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-15 Score=135.84 Aligned_cols=117 Identities=21% Similarity=0.319 Sum_probs=85.2
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeecccc-CCCCCccccEEEEEEeCCCcEEEEEEEeCCCCC
Q 004208 359 VIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVV-DSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLH 437 (768)
Q Consensus 359 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~-~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~ 437 (768)
.+|.|.|+|++|++|.. .|.+||||+++ .+..+|++++ ++.||.|||.|.|.+.++...|.|+|||++ ++
T Consensus 3 ~~~~L~V~V~~A~~l~~------~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~ 73 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGA------QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LI 73 (131)
T ss_dssp CCEEEEEEEEEEECSSC------GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SS
T ss_pred cceEEEEEEEEeECCCC------CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CC
Confidence 35789999999998842 46899999999 4456677665 699999999999999987779999999999 65
Q ss_pred CCCCCCCceEEEEEeccccccCc------eeeeeEeeeecCC--CCc--ccccEEEEEEEE
Q 004208 438 PGGAKDSRIGKVRIRLSTLETDR------IYTHSYPLVALLP--NGV--KKMGEVQLAVRF 488 (768)
Q Consensus 438 ~~~~~d~~lG~~~i~l~~l~~~~------~~~~~~~L~~~~~--~g~--~~~G~i~l~~~~ 488 (768)
+|++||++.|+|+++.... +...||++..... .|. ...+.+.+.++|
T Consensus 74 ----~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~ 130 (131)
T 2cjt_A 74 ----WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 130 (131)
T ss_dssp ----CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred ----CCCeEEEEEEEHHHhhhcCCCCccccEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence 7999999999999986432 3334444332211 111 123557777776
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-15 Score=140.24 Aligned_cols=120 Identities=20% Similarity=0.302 Sum_probs=92.9
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeecccc-CCCCCccccEEEEEEeCCCcEEEEEEEeCCCCC
Q 004208 359 VIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVV-DSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLH 437 (768)
Q Consensus 359 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~-~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~ 437 (768)
.+|.|+|+|++|++|.. .|++||||+++ .+..||++++ ++.||.|||.|.|.+.+....|.|+|||++ ++
T Consensus 12 ~~~~L~V~V~~A~~l~~------~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~ 82 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDGA------QEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LI 82 (167)
T ss_dssp CCCEEEEEEEEEECSSC------GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SS
T ss_pred ceEEEEEEEEEEECCCC------CCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CC
Confidence 46789999999998832 47899999999 4456787775 699999999999999987779999999999 65
Q ss_pred CCCCCCCceEEEEEeccccccC------ceeeeeEeeeecCCC--C--cccccEEEEEEEEEec
Q 004208 438 PGGAKDSRIGKVRIRLSTLETD------RIYTHSYPLVALLPN--G--VKKMGEVQLAVRFTCS 491 (768)
Q Consensus 438 ~~~~~d~~lG~~~i~l~~l~~~------~~~~~~~~L~~~~~~--g--~~~~G~i~l~~~~~~~ 491 (768)
+|++||++.|+|.++... .+...||.+.....+ | ....|++.++++++..
T Consensus 83 ----~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e~~ 142 (167)
T 2cjs_A 83 ----WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFELP 142 (167)
T ss_dssp ----CCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEECC
T ss_pred ----CCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEeecC
Confidence 799999999999998643 244556665433211 1 1235678888888654
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-15 Score=141.92 Aligned_cols=119 Identities=17% Similarity=0.246 Sum_probs=87.6
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeec-CCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCc
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFE-KKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGD 115 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~ 115 (768)
++.|.|+|++|++|. ..|.+||||+++ ++..+|++++ ++.||+|||+|.|.+.+. ...|.|+|||+| . +|+
T Consensus 13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~~~dd 85 (167)
T 2cjs_A 13 LSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-LIWDT 85 (167)
T ss_dssp CCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-SSCCE
T ss_pred eEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-CCCCc
Confidence 679999999999884 368899999999 3345566654 699999999999999875 567999999999 6 999
Q ss_pred eeEEEEEcCCCCCCCCCCCC-CCCCeEEEcccCCCC------ccceEEEEEEEEc
Q 004208 116 FIGKIKIDMPDIPKRVPPDS-PLAPEWKRLEAKDGS------RARGELMFAIWFG 163 (768)
Q Consensus 116 ~lG~~~i~l~~l~~~~~~~~-~~~~~w~~L~~~~~~------~~~G~i~l~i~~~ 163 (768)
+||++.|+|.++........ ...+.|+.+..+.+. ...|.+++.+++.
T Consensus 86 ~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e 140 (167)
T 2cjs_A 86 MVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE 140 (167)
T ss_dssp EEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE
T ss_pred eEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEee
Confidence 99999999999865431110 122344554443332 1235577777764
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.9e-15 Score=131.35 Aligned_cols=116 Identities=12% Similarity=0.185 Sum_probs=99.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeec-CCCCCeeeeEEEEEecc--CCCceEEEEEEEcCCC-CCc
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFE-KKLNPEWNQVFAFTKER--LQAISVELLVKDKMIV-NGD 115 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~Wne~f~f~~~~--~~~~~L~i~V~d~~~~-~d~ 115 (768)
-|+|+|.+|.+|+ |.+|||+++.+.+.+++|++++ ++.||+|||.|.|++.. ..+..|.|.|||++.+ +++
T Consensus 22 sL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nr 96 (144)
T 3l9b_A 22 ALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNK 96 (144)
T ss_dssp EEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCE
T ss_pred EEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCC
Confidence 5999999999998 5789999999999999999998 69999999999999753 3468999999999999 999
Q ss_pred eeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEccc
Q 004208 116 FIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQ 165 (768)
Q Consensus 116 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~~ 165 (768)
+||++.++|.++..... ...+-+|.+.++....++|.+++.|.+.
T Consensus 97 lIG~~~i~Lq~lv~~~~-----l~l~~~LvD~n~~~~~a~I~l~l~Y~pp 141 (144)
T 3l9b_A 97 LIGTFRMVLQKVVEENR-----VEVSDTLIDDNNAIIKTSLSMEVRYQAA 141 (144)
T ss_dssp EEEEEEEESHHHHHHSE-----EEEEEEEECTTSCEEEEEEEEEEEEEET
T ss_pred EEEEEEEEhHHhccCCe-----EEEeecccCCCCCccccEEEEEEEecCC
Confidence 99999999999876531 2346778887766566999999999753
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.7e-15 Score=163.56 Aligned_cols=110 Identities=20% Similarity=0.203 Sum_probs=95.2
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEecc-CCCceEEEEEEEcCCC-CC
Q 004208 37 QMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKER-LQAISVELLVKDKMIV-NG 114 (768)
Q Consensus 37 ~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~-~~~~~L~i~V~d~~~~-~d 114 (768)
+++.|.|+|++|++|+. |..|.+||||+|++++++.+|+++++++||+|||+|.|.+.+ .....|.|+|||+|.. +|
T Consensus 392 ~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~d 470 (540)
T 3nsj_A 392 GLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDD 470 (540)
T ss_dssp TEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCC
T ss_pred cccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence 47899999999999998 989999999999999999999999999999999999998643 3478899999999998 88
Q ss_pred ceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEc
Q 004208 115 DFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFG 163 (768)
Q Consensus 115 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~ 163 (768)
|+||++.++|.. + ....|++|. .|+|.+++.+.
T Consensus 471 D~LG~~~~~L~~---g------~~~~~~~l~-------~G~l~~~~~~~ 503 (540)
T 3nsj_A 471 DLLGSCDRSPHS---G------FHEVTCELN-------HGRVKFSYHAK 503 (540)
T ss_dssp EEEEEEEECCCS---E------EEEEEEECS-------SSEEEEEEEEE
T ss_pred CEEEEEEEEeeC---C------cEEEEEEcC-------CeEEEEEEEEE
Confidence 999999999872 2 135788764 28888887653
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.56 E-value=6.3e-15 Score=167.08 Aligned_cols=121 Identities=23% Similarity=0.358 Sum_probs=104.5
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCc
Q 004208 37 QMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGD 115 (768)
Q Consensus 37 ~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~ 115 (768)
+.+.|.|+|++|++|++.|..|.+||||++.+++++++|+++++|.||+|||+|.|.+.......|.|+|||+|.+ +|+
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d 464 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDD 464 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCC
T ss_pred CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCC
Confidence 4689999999999999999999999999999999999999999999999999999999877678899999999998 899
Q ss_pred eeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEE
Q 004208 116 FIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWF 162 (768)
Q Consensus 116 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~ 162 (768)
+||++.+++.++..+..... ....|++|... ..|+|.+.+.+
T Consensus 465 ~lG~~~~~l~~l~~~~~~~~-~~~~~~~l~~~----~~G~i~l~~~l 506 (510)
T 3jzy_A 465 FLGRTEIPVAKIRTEQESKG-PMTRRLLLHEV----PTGEVWVRFDL 506 (510)
T ss_dssp EEEEEEEEHHHHHHHHHHHC-SCCEEEECBSS----SSCEEEEEEEE
T ss_pred ceEEEEEEHHHhccccCCCC-ceeeeecCCCC----CCceEEEEEEE
Confidence 99999999999865422111 24689998865 34888887765
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.8e-14 Score=157.19 Aligned_cols=113 Identities=19% Similarity=0.258 Sum_probs=98.1
Q ss_pred CeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeC--CCcEEEEEEEeCCC
Q 004208 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYD--PYTVITLVVFDNCH 435 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~--~~~~l~v~v~d~~~ 435 (768)
..+|.|+|.|++|+||+. |..|++||||+++++++.+||+++++++||+|||.|.|.+.+ ..+.|.|+|||+|.
T Consensus 391 ~~~~~L~V~V~~A~~L~~----D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~ 466 (540)
T 3nsj_A 391 RGLAHLVVSNFRAEHLWG----DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADY 466 (540)
T ss_dssp TTEEEEEEEEEEEESCCC----SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCS
T ss_pred CcccEEEEEEEEccCCCc----ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCC
Confidence 457899999999999986 577899999999999999999999999999999999999754 56789999999998
Q ss_pred CCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEEec
Q 004208 436 LHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFTCS 491 (768)
Q Consensus 436 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 491 (768)
.+ +||+||.+.++|.. | ....|++| ..|.|++++.+++.
T Consensus 467 ~~----~dD~LG~~~~~L~~---g-~~~~~~~l---------~~G~l~~~~~~~c~ 505 (540)
T 3nsj_A 467 GW----DDDLLGSCDRSPHS---G-FHEVTCEL---------NHGRVKFSYHAKCL 505 (540)
T ss_dssp SS----CCEEEEEEEECCCS---E-EEEEEEEC---------SSSEEEEEEEEEEC
T ss_pred CC----CCCEEEEEEEEeeC---C-cEEEEEEc---------CCeEEEEEEEEEEC
Confidence 65 88999999999983 3 34677776 24999999999876
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=162.53 Aligned_cols=119 Identities=27% Similarity=0.481 Sum_probs=103.3
Q ss_pred CeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCC-cEEEEEEEeCCCC
Q 004208 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPY-TVITLVVFDNCHL 436 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~-~~l~v~v~d~~~~ 436 (768)
...|.|+|+|++|+||++. |..|.+||||+++++++.++|+++++++||.|||.|.|.+..+. ..|.|+|||+|.+
T Consensus 384 ~~~~~l~v~v~~a~~L~~~---d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~ 460 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKAC---KPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF 460 (510)
T ss_dssp --CEEEEEEEEEEESCCCC---STTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSS
T ss_pred CCCceEEEEeceeecCCCC---CCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence 5678999999999999885 67899999999999999999999999999999999999998765 5899999999986
Q ss_pred CCCCCCCCceEEEEEeccccccCce----eeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 437 HPGGAKDSRIGKVRIRLSTLETDRI----YTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 437 ~~~~~~d~~lG~~~i~l~~l~~~~~----~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
+ +|++||.+.++|.++..+.. ...|++|.+. ..|+|++++.+.
T Consensus 461 ~----~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~------~~G~i~l~~~l~ 507 (510)
T 3jzy_A 461 S----PDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV------PTGEVWVRFDLQ 507 (510)
T ss_dssp S----SCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS------SSCEEEEEEEEE
T ss_pred C----CCCceEEEEEEHHHhccccCCCCceeeeecCCCC------CCceEEEEEEEE
Confidence 5 89999999999999987643 6789988532 459999988874
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.4e-14 Score=123.96 Aligned_cols=116 Identities=16% Similarity=0.272 Sum_probs=99.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeecccc-CCCCCccccEEEEEEeC---CCcEEEEEEEeCCCCC
Q 004208 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVV-DSFDPKWNEQYTWEVYD---PYTVITLVVFDNCHLH 437 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~-~t~nP~wne~~~~~v~~---~~~~l~v~v~d~~~~~ 437 (768)
.|+|.|.+|.||+ |++|||+++.+-+.+++|+++. .+.||.|||.|+|++.. ..+.|.|+|+|++.++
T Consensus 22 sL~V~l~~a~~Lp--------g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~ 93 (144)
T 3l9b_A 22 ALIVHLKTVSELR--------GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVF 93 (144)
T ss_dssp EEEEEEEEEESCC--------SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTS
T ss_pred EEEEEEEEecCCC--------CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcccc
Confidence 4999999999997 3799999999999999999998 59999999999999984 4569999999999987
Q ss_pred CCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEEec
Q 004208 438 PGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFTCS 491 (768)
Q Consensus 438 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 491 (768)
++.+||++.|+|.++..+.....+-+|.+.+. ..-.++|.|.++|.+.
T Consensus 94 ----~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~--~~~~a~I~l~l~Y~pp 141 (144)
T 3l9b_A 94 ----SNKLIGTFRMVLQKVVEENRVEVSDTLIDDNN--AIIKTSLSMEVRYQAA 141 (144)
T ss_dssp ----CCEEEEEEEEESHHHHHHSEEEEEEEEECTTS--CEEEEEEEEEEEEEET
T ss_pred ----CCCEEEEEEEEhHHhccCCeEEEeecccCCCC--CccccEEEEEEEecCC
Confidence 89999999999999998776666778876643 2234889999998643
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=157.97 Aligned_cols=119 Identities=25% Similarity=0.345 Sum_probs=103.0
Q ss_pred cccEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eeeEeeeecCC-CCCeeeeEEEEEeccCCCceEEEEEEE
Q 004208 37 QMEFLYVRIVRARDLQVNQV--TGTCDPYVEVKIGN-----YKGTTIPFEKK-LNPEWNQVFAFTKERLQAISVELLVKD 108 (768)
Q Consensus 37 ~~~~L~V~i~~a~~L~~~d~--~g~~dPyv~v~~~~-----~~~~T~~~~~t-~nP~Wne~f~f~~~~~~~~~L~i~V~d 108 (768)
..+.|.|+|++|++|+..+. .|.+||||+|.+.+ .+.+|++++++ .||+|||+|.|.+.......|.|+|||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D 574 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED 574 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence 45789999999999998874 68999999999955 67899999997 999999999999876655789999999
Q ss_pred cCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEEEc
Q 004208 109 KMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIWFG 163 (768)
Q Consensus 109 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~~~ 163 (768)
+|.+ +|++||++.++|..|..+ ..|++|.+..|.. ..|.|.+.+.+.
T Consensus 575 ~D~~~~dd~iG~~~ipl~~L~~G--------~r~v~L~d~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 575 YDSSSKNDFIGQSTIPWNSLKQG--------YRHVHLLSKNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp CCSSSCCEEEEEEEEEGGGBCCE--------EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred cCCCCCCceeEEEEEEHHHcCCC--------cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence 9988 999999999999999654 4799999887764 468888887763
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=158.65 Aligned_cols=106 Identities=22% Similarity=0.296 Sum_probs=94.9
Q ss_pred cccEEEEEEEEeecCCC---CCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcC
Q 004208 37 QMEFLYVRIVRARDLQV---NQVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKM 110 (768)
Q Consensus 37 ~~~~L~V~i~~a~~L~~---~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~ 110 (768)
+.+.|.|+|++|++|+. +|..|.+||||+|++++ .+++|+++++|.||+|||+|.|.+.......|.|+|||+|
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D 95 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN 95 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECC
T ss_pred CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECC
Confidence 57899999999999998 78889999999999985 6789999999999999999999998766789999999999
Q ss_pred CCCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccC
Q 004208 111 IVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAK 147 (768)
Q Consensus 111 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 147 (768)
.+.|++||++.++|.++..+. ....|++|.+.
T Consensus 96 ~~~ddfIG~v~I~L~~L~~g~-----~~~~w~~L~~~ 127 (749)
T 1cjy_A 96 YVMDETLGTATFTVSSMKVGE-----KKEVPFIFNQV 127 (749)
T ss_dssp SSSCEEEEEECCBSTTSCTTC-----CCCEEEEETTT
T ss_pred CCCCceeEEEEEEHHHcCCCC-----ceEEEEecCCC
Confidence 877999999999999997653 24799999754
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.43 E-value=8.3e-13 Score=150.74 Aligned_cols=122 Identities=16% Similarity=0.287 Sum_probs=100.3
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-----eeeeeccccCC-CCCccccEEEEEEeCCC-cEEEEEEE
Q 004208 359 VIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-----KWVRTRTVVDS-FDPKWNEQYTWEVYDPY-TVITLVVF 431 (768)
Q Consensus 359 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-----~~~~T~~~~~t-~nP~wne~~~~~v~~~~-~~l~v~v~ 431 (768)
..+.|+|+|++|++|+.++. ...|.+||||+|++.+ ...||++++++ .||.|||+|.|.+..+. ..|.|+||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~-~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~ 573 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNK-NKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVE 573 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSS-CSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccc-cccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEE
Confidence 56889999999999998631 1367899999999944 57899999997 99999999999998764 58999999
Q ss_pred eCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 432 DNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 432 d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
|++.++ +|++||++.|||..|..|. +|+||.+...... ..|.|.+.+.++
T Consensus 574 D~D~~~----~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~~~-~~~~L~v~i~~~ 623 (624)
T 1djx_A 574 DYDSSS----KNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQH-PSATLFVKISIQ 623 (624)
T ss_dssp ECCSSS----CCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEE-EEEEEEEEEEEE
T ss_pred EcCCCC----CCceeEEEEEEHHHcCCCc---EEEeCCCCCcCCC-CceEEEEEEEEE
Confidence 999865 8999999999999998864 6999977642211 347888888773
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-14 Score=160.78 Aligned_cols=121 Identities=23% Similarity=0.354 Sum_probs=21.1
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-eeeeccccCC---CCCccccEEEEEEeCCCcEEEEEEEeC-
Q 004208 359 VIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-WVRTRTVVDS---FDPKWNEQYTWEVYDPYTVITLVVFDN- 433 (768)
Q Consensus 359 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-~~~T~~~~~t---~nP~wne~~~~~v~~~~~~l~v~v~d~- 433 (768)
..|.|+|+|++|+||+++ + ||||+++++++ +.||+++++| +||.|||+|+|.+......|.|+|||+
T Consensus 9 ~~~~L~V~VieAk~L~~~---d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~ 80 (483)
T 3bxj_A 9 VDNVLKLWIIEARELPPK---K-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDS 80 (483)
T ss_dssp EEECC-----------------------------------------------------CCEECC----------------
T ss_pred eccEEEEEEEEcCCcCCC---C-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecC
Confidence 456799999999999884 3 99999999876 6799999999 999999999999765567999999995
Q ss_pred C---CCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCC---------------------CCcccccEEEEEEEEE
Q 004208 434 C---HLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLP---------------------NGVKKMGEVQLAVRFT 489 (768)
Q Consensus 434 ~---~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~---------------------~g~~~~G~i~l~~~~~ 489 (768)
+ .++ +|++||++.|++.++..++....||+|...+. ++.+..|.|+|+++|.
T Consensus 81 d~~~~~~----~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~ 156 (483)
T 3bxj_A 81 DKKRKKD----KAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQ 156 (483)
T ss_dssp ------------------------------CCEECC--------------------------------------CEEEEE
T ss_pred CccccCC----CCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEee
Confidence 3 223 79999999999999998888899999975543 1223469999999996
Q ss_pred ec
Q 004208 490 CS 491 (768)
Q Consensus 490 ~~ 491 (768)
..
T Consensus 157 ~~ 158 (483)
T 3bxj_A 157 TM 158 (483)
T ss_dssp EC
T ss_pred ee
Confidence 54
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-12 Score=148.83 Aligned_cols=107 Identities=17% Similarity=0.237 Sum_probs=94.9
Q ss_pred CCeeEEEEEEEEeecCCC---CCCCCCCCcEEEEEEC---CeEEeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEe
Q 004208 197 PKLWYLRVNVIEAQDLVP---KQRNRNPEVFIKAIFG---NVVLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVED 270 (768)
Q Consensus 197 p~~~~L~V~v~~a~~L~~---~d~~~~~dpyV~v~lg---~~~~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d 270 (768)
+..+.|+|+|++|++|+. +|..|.+||||++.++ .++++|+++++ ++||+|||+|.|.+..+....|.|+|||
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~-tlNPvWNEtF~F~v~~~~~~~L~~~V~D 93 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPNQENVLEITLMD 93 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTTSCCBCEEEEEE
T ss_pred CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcC-CCCCeeeeEEEEEecCCCCCEEEEEEEE
Confidence 345789999999999998 7888899999999997 46889999997 9999999999999988777899999999
Q ss_pred ccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 271 KLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 271 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
+|..+ +++||++.++|.++.. +.....|++|.+.
T Consensus 94 ~D~~~-ddfIG~v~I~L~~L~~----g~~~~~w~~L~~~ 127 (749)
T 1cjy_A 94 ANYVM-DETLGTATFTVSSMKV----GEKKEVPFIFNQV 127 (749)
T ss_dssp CCSSS-CEEEEEECCBSTTSCT----TCCCCEEEEETTT
T ss_pred CCCCC-CceeEEEEEEHHHcCC----CCceEEEEecCCC
Confidence 99988 9999999999999863 3446789999865
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-13 Score=150.86 Aligned_cols=100 Identities=15% Similarity=0.288 Sum_probs=13.1
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCC---CCCeeeeEEEEEeccCCCceEEEEEEEc-C--
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-KGTTIPFEKK---LNPEWNQVFAFTKERLQAISVELLVKDK-M-- 110 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t---~nP~Wne~f~f~~~~~~~~~L~i~V~d~-~-- 110 (768)
.+.|.|+|++|++|+++| ||||+++++++ ..||+++++| .||+|||+|.|.+... ...|.|+|||. |
T Consensus 10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~~d~~ 83 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRDSDKK 83 (483)
T ss_dssp EECC--------------------------------------------------CCEECC--------------------
T ss_pred ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEecCCcc
Confidence 467999999999999876 99999999985 6799999999 9999999999986543 57899999995 4
Q ss_pred -CC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC
Q 004208 111 -IV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148 (768)
Q Consensus 111 -~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 148 (768)
.. +|++||++.|++.++..+. ...+|++|.++.
T Consensus 84 ~~~~~d~~lG~v~i~l~~l~~~~-----~~~~W~~L~~~~ 118 (483)
T 3bxj_A 84 RKKDKAGYVGLVTVPVATLAGRH-----FTEQWYPVTLPT 118 (483)
T ss_dssp ----------------------------CCEECC------
T ss_pred ccCCCCceEEEEEEEHHHhcCCC-----CCCeEEECCCCC
Confidence 24 8999999999999997653 257899996543
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=9.3e-11 Score=136.82 Aligned_cols=111 Identities=19% Similarity=0.241 Sum_probs=93.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeEeeeecC-CCCCeeee-EEEEE-eccCCCceEEEEEEEc
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN------YKGTTIPFEK-KLNPEWNQ-VFAFT-KERLQAISVELLVKDK 109 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~-t~nP~Wne-~f~f~-~~~~~~~~L~i~V~d~ 109 (768)
..|.|+|++|++|+.. .+||||+|.+.+ .+++|+++++ +.||+||| +|.|. +.......|+|+|||+
T Consensus 725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~ 800 (885)
T 3ohm_B 725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE 800 (885)
T ss_dssp EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence 4799999999999753 589999999975 3579999876 59999999 69998 6554456899999999
Q ss_pred CCCCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEEEcc
Q 004208 110 MIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIWFGT 164 (768)
Q Consensus 110 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~~~~ 164 (768)
| +++||++.++|..|..+ .++++|.+..|.. ..|.|.+.+.+..
T Consensus 801 d---ddfiG~~~lpL~~L~~G--------yR~vpL~~~~g~~l~~atLfv~i~~~~ 845 (885)
T 3ohm_B 801 G---GKFVGHRILPVSAIRSG--------YHYVCLRNEANQPLCLPALLIYTEASD 845 (885)
T ss_dssp T---TEEEEEEEEETTTCCCE--------EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred C---ccEEeeEEEEHHHcCCC--------ceEEEecCCCCCccCceEEEEEEEEEe
Confidence 7 89999999999998764 5689999988764 5789999988764
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=134.38 Aligned_cols=112 Identities=20% Similarity=0.254 Sum_probs=93.8
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeEeeeecC-CCCCeeeeE-EEEE-eccCCCceEEEEEE
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-------YKGTTIPFEK-KLNPEWNQV-FAFT-KERLQAISVELLVK 107 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~~-t~nP~Wne~-f~f~-~~~~~~~~L~i~V~ 107 (768)
.+.|.|+|++|++|+.+ .+||||+|.+.+ .+++|+++++ +.||+|||+ |.|. +....-..|+|+||
T Consensus 649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~ 724 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS 724 (816)
T ss_dssp CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence 36899999999999753 589999999976 5679999875 699999998 9998 65554578999999
Q ss_pred EcCCCCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEEEcc
Q 004208 108 DKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIWFGT 164 (768)
Q Consensus 108 d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~~~~ 164 (768)
|++ +++||++.++|..|..+ -++++|.+..|.. ..++|.+.+.+..
T Consensus 725 D~d---ddfiG~~~ipL~~L~~G--------yR~vpL~~~~g~~~~~atLfv~i~~~~ 771 (816)
T 3qr0_A 725 EEN---GKFIGHRVMPLDGIKPG--------YRHVPLRNESNRPLGLASVFAHIVAKD 771 (816)
T ss_dssp ETT---SCEEEEEEEESTTCCCE--------EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred ecC---CCeeeEEEEEHHHcCCc--------ceEEEEeCCCCCCCCceEEEEEEEEEe
Confidence 985 89999999999999765 5789999987765 3488998888764
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.13 E-value=5.6e-11 Score=138.63 Aligned_cols=105 Identities=27% Similarity=0.499 Sum_probs=91.4
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeEeeeecCCCCCeeeeEEEEEeccC-CCceEEEEEEEcCC
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYKGTTIPFEKKLNPEWNQVFAFTKERL-QAISVELLVKDKMI 111 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~Wne~f~f~~~~~-~~~~L~i~V~d~~~ 111 (768)
.+.|.|+|++|++|..+|..|.+||||++++ +..+.+|+++++|.||+|||+|.|.+... ....|.|+|||+|.
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~ 250 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 250 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence 4789999999999999999999999999999 33578999999999999999999997533 24579999999999
Q ss_pred C-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC
Q 004208 112 V-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148 (768)
Q Consensus 112 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 148 (768)
. +|++||++.+++.++.... ...|+.|....
T Consensus 251 ~~~dd~iG~~~i~l~~l~~~~------~~~w~~Lls~~ 282 (674)
T 3pfq_A 251 TSRNDFMGSLSFGISELQKAG------VDGWFKLLSQE 282 (674)
T ss_dssp SSCCEECCBCCCBTTHHHHCC------EEEEEECBCTT
T ss_pred ccccccccccccchhhhccCC------cccceeecccc
Confidence 9 9999999999999886542 47899987654
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.10 E-value=2.5e-10 Score=133.44 Aligned_cols=110 Identities=17% Similarity=0.238 Sum_probs=89.7
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeEee-eec-CCCCCeeee-EEEE-EeccCCCceEEEEEE
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN------YKGTTI-PFE-KKLNPEWNQ-VFAF-TKERLQAISVELLVK 107 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~-~~~-~t~nP~Wne-~f~f-~~~~~~~~~L~i~V~ 107 (768)
.+.|.|+|++|++|+. +.+||||+|.+.| .+++|+ +++ ++.||+||| +|.| .+....-..|.|+||
T Consensus 677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~ 752 (799)
T 2zkm_X 677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM 752 (799)
T ss_dssp CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEE
T ss_pred eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEE
Confidence 5789999999999974 4689999999953 357899 776 469999999 7999 775544568999999
Q ss_pred EcCCCCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEEE
Q 004208 108 DKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIWF 162 (768)
Q Consensus 108 d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~~ 162 (768)
|++ +++||++.++|..|..+ ..|++|.+..|.. ..+.|.+.+.+
T Consensus 753 D~d---~d~iG~~~ipl~~L~~G--------~r~v~L~~~~g~~~~~~~Lfv~i~~ 797 (799)
T 2zkm_X 753 EEG---NKFLGHRIIPINALNSG--------YHHLCLHSESNMPLTMPALFIFLEM 797 (799)
T ss_dssp ETT---TEEEEEEEEEGGGBCCE--------EEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred EeC---CCccceEeeehhhcCCC--------cEEEeccCCCCCCCCceEEEEEEEE
Confidence 997 89999999999998654 5789999877653 44777777765
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-10 Score=134.27 Aligned_cols=104 Identities=23% Similarity=0.444 Sum_probs=91.1
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe-----cCeeeeeccccCCCCCccccEEEEEEeC--CCcEEEEEEEe
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKY-----ANKWVRTRTVVDSFDPKWNEQYTWEVYD--PYTVITLVVFD 432 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-----g~~~~~T~~~~~t~nP~wne~~~~~v~~--~~~~l~v~v~d 432 (768)
.+.|.|.|++|++|.++ |..|.+||||++++ +....+|+++++++||.|||.|.|.+.. ....|.|+|||
T Consensus 171 ~~~L~V~v~~a~~L~~~---d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d 247 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWD 247 (674)
T ss_dssp SSEEEEEEEEEESCCCC---STTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEE
T ss_pred cceeeeeeecccccCCC---CcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEee
Confidence 35699999999999996 67889999999999 4457999999999999999999999975 34579999999
Q ss_pred CCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeec
Q 004208 433 NCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVAL 471 (768)
Q Consensus 433 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 471 (768)
++.++ +|++||.+.++++++..+.. ..||+|...
T Consensus 248 ~d~~~----~dd~iG~~~i~l~~l~~~~~-~~w~~Lls~ 281 (674)
T 3pfq_A 248 WDLTS----RNDFMGSLSFGISELQKAGV-DGWFKLLSQ 281 (674)
T ss_dssp CCSSS----CCEECCBCCCBTTHHHHCCE-EEEEECBCT
T ss_pred ccccc----ccccccccccchhhhccCCc-ccceeeccc
Confidence 99865 89999999999999987653 899999764
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-09 Score=126.90 Aligned_cols=110 Identities=20% Similarity=0.319 Sum_probs=88.9
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC-------eeeeeccccC-CCCCccccE-EEEE-EeCCC-cEEEE
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN-------KWVRTRTVVD-SFDPKWNEQ-YTWE-VYDPY-TVITL 428 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~-------~~~~T~~~~~-t~nP~wne~-~~~~-v~~~~-~~l~v 428 (768)
.+.|+|+|++|++|+. ..+||||+|++.+ +.+||+++++ ++||+|||+ |.|. |..+. ..|.+
T Consensus 649 ~~~L~V~Visaq~L~~-------~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf 721 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSD-------KQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRI 721 (816)
T ss_dssp CEEEEEEEEEEECCCS-------SCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEE
T ss_pred ceEEEEEEEEcccCCC-------CCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEE
Confidence 4789999999999975 2589999999954 5689999986 599999998 9998 76554 58999
Q ss_pred EEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcc-cccEEEEEEEEE
Q 004208 429 VVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVK-KMGEVQLAVRFT 489 (768)
Q Consensus 429 ~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~~~ 489 (768)
.|||++ |++||++.|||+.|..|- ++.||.+.. |.. ..+.|.+.+.+.
T Consensus 722 ~V~D~d--------ddfiG~~~ipL~~L~~Gy---R~vpL~~~~--g~~~~~atLfv~i~~~ 770 (816)
T 3qr0_A 722 IVSEEN--------GKFIGHRVMPLDGIKPGY---RHVPLRNES--NRPLGLASVFAHIVAK 770 (816)
T ss_dssp EEEETT--------SCEEEEEEEESTTCCCEE---EEEEEECTT--SCEEEEEEEEEEEEEE
T ss_pred EEEecC--------CCeeeEEEEEHHHcCCcc---eEEEEeCCC--CCCCCceEEEEEEEEE
Confidence 999974 679999999999999874 578997754 322 237777777775
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=127.91 Aligned_cols=110 Identities=18% Similarity=0.298 Sum_probs=88.4
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC------eeeeeccccC-CCCCcccc-EEEEE-EeCCC-cEEEEEE
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN------KWVRTRTVVD-SFDPKWNE-QYTWE-VYDPY-TVITLVV 430 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~------~~~~T~~~~~-t~nP~wne-~~~~~-v~~~~-~~l~v~v 430 (768)
..|+|.|++|++|+. ..+||||+|.+.+ ..+||+++++ ++||+||| .|.|. |..+. ..|.|+|
T Consensus 725 ~~L~V~Visaq~L~~-------~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V 797 (885)
T 3ohm_B 725 NALRVKVISGQFLSD-------RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAA 797 (885)
T ss_dssp EEEEEEEEEEESCCS-------SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEE
T ss_pred eEEEEEEEEeccCcc-------cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEE
Confidence 479999999999975 2589999999954 3589999986 59999999 69998 76553 5899999
Q ss_pred EeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 431 FDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 431 ~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
||++ |++||++.|||+.|..|- ++.||.+...... ..|.|.+.+.+.
T Consensus 798 ~D~d--------ddfiG~~~lpL~~L~~Gy---R~vpL~~~~g~~l-~~atLfv~i~~~ 844 (885)
T 3ohm_B 798 FEEG--------GKFVGHRILPVSAIRSGY---HYVCLRNEANQPL-CLPALLIYTEAS 844 (885)
T ss_dssp EETT--------TEEEEEEEEETTTCCCEE---EEEEEECTTSCEE-EEEEEEEEEEEE
T ss_pred EcCC--------ccEEeeEEEEHHHcCCCc---eEEEecCCCCCcc-CceEEEEEEEEE
Confidence 9975 679999999999998874 4688877642211 358888888886
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-09 Score=126.44 Aligned_cols=111 Identities=17% Similarity=0.320 Sum_probs=87.5
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC------eeeeec-cccC-CCCCcccc-EEEE-EEeCCC-cEEE
Q 004208 359 VIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN------KWVRTR-TVVD-SFDPKWNE-QYTW-EVYDPY-TVIT 427 (768)
Q Consensus 359 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~------~~~~T~-~~~~-t~nP~wne-~~~~-~v~~~~-~~l~ 427 (768)
..|.|.|.|++|++|+. +++||||+|.+.+ +.+||+ ++++ ++||+||| .|.| .|..+. ..|.
T Consensus 676 ~~~~L~V~Visa~~L~~-------~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr 748 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE-------RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLR 748 (799)
T ss_dssp TCEEEEEEEEEEESCCS-------SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEE
T ss_pred eeeeEEEEEEeccccCc-------cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEE
Confidence 46789999999999975 3689999999932 358999 8875 68999999 6999 787654 4899
Q ss_pred EEEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 428 LVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 428 v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
|.|||++ |++||.+.|||+.|..|. +++||.+...... ..+.|.+.+.+
T Consensus 749 ~~V~D~d--------~d~iG~~~ipl~~L~~G~---r~v~L~~~~g~~~-~~~~Lfv~i~~ 797 (799)
T 2zkm_X 749 VAVMEEG--------NKFLGHRIIPINALNSGY---HHLCLHSESNMPL-TMPALFIFLEM 797 (799)
T ss_dssp EEEEETT--------TEEEEEEEEEGGGBCCEE---EEEEEECTTCCEE-EEEEEEEEEEE
T ss_pred EEEEEeC--------CCccceEeeehhhcCCCc---EEEeccCCCCCCC-CceEEEEEEEE
Confidence 9999974 679999999999998764 6789976542211 24677777766
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.87 E-value=6.4e-09 Score=89.65 Aligned_cols=114 Identities=13% Similarity=0.305 Sum_probs=86.0
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe----eeEe-eeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCC
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNY----KGTT-IPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVN 113 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~----~~~T-~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~ 113 (768)
..|+|.+.++.--.........||||.|.+... +.+| .++++|..|+|||+|.-.+.+ ...|.|.|++...
T Consensus 6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~-- 81 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE-- 81 (126)
T ss_dssp CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT--
T ss_pred ccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC--
Confidence 579999987764222223457899999999863 2365 778899999999999999887 6789999997654
Q ss_pred CceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEc
Q 004208 114 GDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFG 163 (768)
Q Consensus 114 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~ 163 (768)
+|++.|++.+.+|..+-..+......|+.|++. |+|++.+.+.
T Consensus 82 -~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP~------Gkl~~~i~~~ 124 (126)
T 1yrk_A 82 -EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQPQ------AKVLMSVQYF 124 (126)
T ss_dssp -EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSS------CEEEEEEEEE
T ss_pred -CeeeEEEEEHHHHHhhhccCCCceEEEEecccC------cEEEEEEEEe
Confidence 999999999999964310001235789999863 9999888664
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.7e-09 Score=91.12 Aligned_cols=114 Identities=18% Similarity=0.408 Sum_probs=87.6
Q ss_pred cEEEEEEEEeecCCCCC-CCCCCCcEEEEEECCe----eeEe-eeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC
Q 004208 39 EFLYVRIVRARDLQVNQ-VTGTCDPYVEVKIGNY----KGTT-IPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV 112 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d-~~g~~dPyv~v~~~~~----~~~T-~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~ 112 (768)
+.|+|.+.++.-.+... .....||||.|.+... ..+| .++++|..|+|||+|.-.+.+ ...|.|.|++...
T Consensus 10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~- 86 (138)
T 2enj_A 10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKNV- 86 (138)
T ss_dssp CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSSC-
T ss_pred cceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCCC-
Confidence 57999998886544332 2346899999999863 3677 778889999999999998887 6789999996654
Q ss_pred CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEc
Q 004208 113 NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFG 163 (768)
Q Consensus 113 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~ 163 (768)
+|++.|+|.+.+|..+-..+......|+.|++. |+|++.+.+.
T Consensus 87 --~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP~------Gkl~v~i~~~ 129 (138)
T 2enj_A 87 --DLISETTVELYSLAERCRKNNGKTEIWLELKPQ------GRMLMNARYF 129 (138)
T ss_dssp --SCCEEEEEESHHHHHHHHHTTTCEEEEEECBSS------CEEEEEEEEC
T ss_pred --CeeeEEEEEHHHHHhhhccCCCceEEEEecccC------cEEEEEEEEE
Confidence 999999999999974300001235789999863 9999998875
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.6e-07 Score=79.66 Aligned_cols=112 Identities=16% Similarity=0.226 Sum_probs=80.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe----EEeeecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCCCC
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNV----VLKTTVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGDNK 276 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~~----~~~T~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~ 276 (768)
.|+|.+.+..--+.+......||||.+.+... ..+|-+.+++|..|.||++|.-.+.+ ...|.|.|++..
T Consensus 7 flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a---- 80 (126)
T 1yrk_A 7 FLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA---- 80 (126)
T ss_dssp EEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEET----
T ss_pred cEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCC----
Confidence 57888866653222223346899999998532 23553334459999999999998876 467999999643
Q ss_pred CceeEEEEEeccccccccCC-CCCCceeEEcccCccCccccccccccceEEEEEec
Q 004208 277 EECLGRLVLPLSKAGKRFLP-LPAAAIWYNLERNIANGEEKKDVRFASRICLRFSL 331 (768)
Q Consensus 277 d~~lG~~~i~l~~l~~~~~~-~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~ 331 (768)
.++++.|+|++.+|..++.. +...+-|++|++. |+|++.+.+
T Consensus 81 ~~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP~-------------Gkl~~~i~~ 123 (126)
T 1yrk_A 81 EEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQPQ-------------AKVLMSVQY 123 (126)
T ss_dssp TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSS-------------CEEEEEEEE
T ss_pred CCeeeEEEEEHHHHHhhhccCCCceEEEEecccC-------------cEEEEEEEE
Confidence 28999999999999865321 3456789999985 888887753
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=4e-07 Score=79.54 Aligned_cols=111 Identities=12% Similarity=0.192 Sum_probs=81.7
Q ss_pred EEEEEEEEeecCCCCC-CCCCCCcEEEEEECCe----EEee-ecccCCCCCCcccceEEEEecCCCCCcEEEEEEeccCC
Q 004208 201 YLRVNVIEAQDLVPKQ-RNRNPEVFIKAIFGNV----VLKT-TVSAKKTVNPTWNEDLMFVAAEPFDDPLILTVEDKLGD 274 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d-~~~~~dpyV~v~lg~~----~~~T-~~i~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~ 274 (768)
.|||.+.+..--+.+. .....||||.|.+... ..+| .+.++ |..|.||++|.-.+.+ ...|.|.|++..
T Consensus 11 flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~Kkk-T~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a-- 85 (138)
T 2enj_A 11 FLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKP-TMYPPWDSTFDAHINK--GRVMQIIVKGKN-- 85 (138)
T ss_dssp CEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEE-EECCCSSSEEEECCCS--SCEEEEEEECSS--
T ss_pred ceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCC-CCCccccceEeeeEEC--CeEEEEEEEcCC--
Confidence 5888887766433332 2346899999998532 2555 34444 9999999999988876 467999999642
Q ss_pred CCCceeEEEEEeccccccccC-CCCCCceeEEcccCccCccccccccccceEEEEEec
Q 004208 275 NKEECLGRLVLPLSKAGKRFL-PLPAAAIWYNLERNIANGEEKKDVRFASRICLRFSL 331 (768)
Q Consensus 275 ~~d~~lG~~~i~l~~l~~~~~-~~~~~~~w~~L~~~~~~g~~~~~~~~~g~i~l~v~~ 331 (768)
.+++..|+|++.+|..++. .+...+-|++|++. |+|++.+.+
T Consensus 86 --~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP~-------------Gkl~v~i~~ 128 (138)
T 2enj_A 86 --VDLISETTVELYSLAERCRKNNGKTEIWLELKPQ-------------GRMLMNARY 128 (138)
T ss_dssp --CSCCEEEEEESHHHHHHHHHTTTCEEEEEECBSS-------------CEEEEEEEE
T ss_pred --CCeeeEEEEEHHHHHhhhccCCCceEEEEecccC-------------cEEEEEEEE
Confidence 2899999999999986531 13456889999985 889988875
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=92.21 E-value=0.52 Score=42.51 Aligned_cols=126 Identities=14% Similarity=0.156 Sum_probs=86.5
Q ss_pred cccccccEEEEEEEEeecCCCCC--CCCCCCcEEEEEEC--C-eeeEeeeecCCCCCeeeeEEEEEecc-------CCCc
Q 004208 33 DLVEQMEFLYVRIVRARDLQVNQ--VTGTCDPYVEVKIG--N-YKGTTIPFEKKLNPEWNQVFAFTKER-------LQAI 100 (768)
Q Consensus 33 ~~~~~~~~L~V~i~~a~~L~~~d--~~g~~dPyv~v~~~--~-~~~~T~~~~~t~nP~Wne~f~f~~~~-------~~~~ 100 (768)
++.+..+.+.|+|.++. +.+.- ..+..+|..-+.++ + +.+.|.++. +.+|.+|.+-.|.+.- +++.
T Consensus 12 ~l~~gEnlfEihi~~~~-~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~ 89 (156)
T 2yrb_A 12 HLERGENLFEIHINKVT-FSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKN 89 (156)
T ss_dssp SCCSSCEEEEEEEEEEC-CCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHC
T ss_pred hccCCCcEEEEEEeEEE-EcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcC
Confidence 34456689999999986 32110 12345777666655 4 445566554 8899999999998742 2356
Q ss_pred eEEEEEEEcCCCCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCC-ccceEEEEEEEEcc
Q 004208 101 SVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS-RARGELMFAIWFGT 164 (768)
Q Consensus 101 ~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~i~~~~ 164 (768)
.+.++++......-+.||.+.|+|.++..... ....-.+|....+. ...|.|.+.+.+..
T Consensus 90 ~l~lELhqa~g~~~~tla~~~I~l~~lLe~~~----~i~g~~~L~g~~g~~~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 90 TITLEVHQAYSTEYETIAACQLKFHEILEKSG----RIFCTASLIGTKGDIPNFGTVEYWFRLRV 150 (156)
T ss_dssp CEEEEEEEECSSCEEEEEEEEECCSHHHHCCS----CEEEEEEECBSSSCCTTSEEEEEEEEEEE
T ss_pred CEEEEEEEeeCCCceEEEEEEEEhHHhhCcCC----ceEEEEEEEcCCCCcceEEEEEEEEEEec
Confidence 89999988754467899999999999975521 13445677777664 36799988887754
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=87.57 E-value=3 Score=49.70 Aligned_cols=92 Identities=21% Similarity=0.293 Sum_probs=61.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe--cCee----eeeccccCCCCCccccEEEEEEe--C-C-CcEEEEEE
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKY--ANKW----VRTRTVVDSFDPKWNEQYTWEVY--D-P-YTVITLVV 430 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--g~~~----~~T~~~~~t~nP~wne~~~~~v~--~-~-~~~l~v~v 430 (768)
..++|+|.++.++.. +.....+-||.+.+ |++. .+|+.+. ..+|.|||-++|++. + | .+.|.++|
T Consensus 355 ~~f~v~i~~~~~~n~----~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl 429 (1091)
T 3hhm_A 355 SALRIKILCATYVNV----NIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSI 429 (1091)
T ss_dssp SEEEEEEEEESCCCC----CCSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEE
T ss_pred CCEEEEEEEecCCCC----CccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEE
Confidence 468999999998865 22334678888666 7654 3444333 457889999999886 3 3 56999999
Q ss_pred EeCCCCCCCCCCCCceEEEEEeccccc
Q 004208 431 FDNCHLHPGGAKDSRIGKVRIRLSTLE 457 (768)
Q Consensus 431 ~d~~~~~~~~~~d~~lG~~~i~l~~l~ 457 (768)
|+......+.+....||.+.++|-+..
T Consensus 430 ~~~~~~~~~~~~~~~lg~~n~~lfd~~ 456 (1091)
T 3hhm_A 430 CSVKGRKGAKEEHCPLAWGNINLFDYT 456 (1091)
T ss_dssp CCCCCCC-------CCEEEEEESBCTT
T ss_pred EEecCccCcccccceeEEeeeeeEccC
Confidence 986642100123568999999998743
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=85.85 E-value=3.3 Score=37.31 Aligned_cols=124 Identities=15% Similarity=0.216 Sum_probs=79.9
Q ss_pred CeeeEEEEEEEEecCCCCCCCCCCCCCcCc--EEEEEecC-eeeeeccccCCCCCccccEEEEEEeCC--------CcEE
Q 004208 358 PVIGVLELGILSAKELLPMKSRDGRGTTDA--YCVAKYAN-KWVRTRTVVDSFDPKWNEQYTWEVYDP--------YTVI 426 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dp--yv~v~~g~-~~~~T~~~~~t~nP~wne~~~~~v~~~--------~~~l 426 (768)
+..+.++|+|.++. +.+.-. ...+..+| ||.+.+-. +..-|.++. ..+|.+|-+..|.|.-. ...+
T Consensus 15 ~gEnlfEihi~~~~-~~~~~l-~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l 91 (156)
T 2yrb_A 15 RGENLFEIHINKVT-FSSEVL-QASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTI 91 (156)
T ss_dssp SSCEEEEEEEEEEC-CCHHHH-HHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCE
T ss_pred CCCcEEEEEEeEEE-EcHHHH-hhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCE
Confidence 45567999998887 432100 00122345 45544434 556666655 78999999888888522 1378
Q ss_pred EEEEEeCCCCCCCCCCCCceEEEEEeccccccCc-eeeeeEeeeecCCCCcccccEEEEEEEEEe
Q 004208 427 TLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDR-IYTHSYPLVALLPNGVKKMGEVQLAVRFTC 490 (768)
Q Consensus 427 ~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 490 (768)
.|++..... ..-+.||.++|+|.++...+ .+...-+|.+... +....|.|+..+++..
T Consensus 92 ~lELhqa~g-----~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g-~~~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 92 TLEVHQAYS-----TEYETIAACQLKFHEILEKSGRIFCTASLIGTKG-DIPNFGTVEYWFRLRV 150 (156)
T ss_dssp EEEEEEECS-----SCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSS-CCTTSEEEEEEEEEEE
T ss_pred EEEEEEeeC-----CCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCC-CcceEEEEEEEEEEec
Confidence 888877643 24569999999999988543 3455567766532 2135699999999864
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.75 E-value=7.8 Score=37.02 Aligned_cols=40 Identities=5% Similarity=0.201 Sum_probs=32.6
Q ss_pred eeEeeeecCCCCCeeeeEEEEEec--cCCCceEEEEEEEcCC
Q 004208 72 KGTTIPFEKKLNPEWNQVFAFTKE--RLQAISVELLVKDKMI 111 (768)
Q Consensus 72 ~~~T~~~~~t~nP~Wne~f~f~~~--~~~~~~L~i~V~d~~~ 111 (768)
.++|.+...+.+|.|+|++.+.+. ......|.|++++...
T Consensus 78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~ 119 (220)
T 3l4c_A 78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSS 119 (220)
T ss_dssp CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCC
T ss_pred eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecc
Confidence 467888888999999999999864 4556889999988764
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=84.46 E-value=5.2 Score=47.23 Aligned_cols=91 Identities=13% Similarity=0.281 Sum_probs=61.6
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe--cCee----eeeccccCCCCCccccEEEEEEe--C-C-CcEEEEEE
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKY--ANKW----VRTRTVVDSFDPKWNEQYTWEVY--D-P-YTVITLVV 430 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--g~~~----~~T~~~~~t~nP~wne~~~~~v~--~-~-~~~l~v~v 430 (768)
..++|.|.++.++.. + ..++-||.+.+ |++. ..|..+.-..+|.|||-++|++. + | ...|.++|
T Consensus 217 ~~f~i~i~~~~~~~~----~--~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti 290 (940)
T 2wxf_A 217 QPFSIELIEGRKVNA----D--ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFAL 290 (940)
T ss_dssp SEEEEEEEEEECCCC---------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEE
T ss_pred CceEEEEEEecccCC----C--CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEE
Confidence 359999999999965 2 34678887555 7754 45555555678999999999887 3 4 45899999
Q ss_pred EeCCCC--C---C---CCCCCCceEEEEEeccccc
Q 004208 431 FDNCHL--H---P---GGAKDSRIGKVRIRLSTLE 457 (768)
Q Consensus 431 ~d~~~~--~---~---~~~~d~~lG~~~i~l~~l~ 457 (768)
|+...- + . ..+.+..||.+.++|-+-.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~ 325 (940)
T 2wxf_A 291 YAVVEKAKKARSTKKKSKKADCPIAWANLMLFDYK 325 (940)
T ss_dssp EEEC----------------CEEEEEEEEESBCTT
T ss_pred EEecCCccCccccccccccccceEEEEeeeEECCc
Confidence 995321 0 0 0013459999999998743
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=81.08 E-value=6 Score=46.71 Aligned_cols=86 Identities=15% Similarity=0.223 Sum_probs=58.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----EEeeecccCCCCCCcccceEEEEec---CCCCCcEEEEEEec
Q 004208 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIF--GNV----VLKTTVSAKKTVNPTWNEDLMFVAA---EPFDDPLILTVEDK 271 (768)
Q Consensus 201 ~L~V~v~~a~~L~~~d~~~~~dpyV~v~l--g~~----~~~T~~i~~~t~nP~wne~f~f~~~---~~~~~~L~i~V~d~ 271 (768)
.++|.|.++.++... ...+-||++.+ |++ ...|+.+.. ..+|.|||-+.|++. -|.+..|.|+||+.
T Consensus 218 ~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~-~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~ 293 (940)
T 2wxf_A 218 PFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNV-CSEPVWKQRLEFDISVCDLPRMARLCFALYAV 293 (940)
T ss_dssp EEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEES-CSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEE
T ss_pred ceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccC-CCCcccceEEEcccccccCCcccEEEEEEEEe
Confidence 699999999998753 34678888776 654 234444443 678999999998763 34677899999986
Q ss_pred cCC--C----------CCceeEEEEEecccc
Q 004208 272 LGD--N----------KEECLGRLVLPLSKA 290 (768)
Q Consensus 272 d~~--~----------~d~~lG~~~i~l~~l 290 (768)
... + .+..+|.+.++|-+-
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~ 324 (940)
T 2wxf_A 294 VEKAKKARSTKKKSKKADCPIAWANLMLFDY 324 (940)
T ss_dssp C----------------CEEEEEEEEESBCT
T ss_pred cCCccCccccccccccccceEEEEeeeEECC
Confidence 321 1 234778777776553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 768 | ||||
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 1e-17 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 7e-10 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 3e-07 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 2e-15 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 2e-14 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 4e-11 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 3e-15 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 3e-15 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 6e-06 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 9e-14 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 8e-13 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 4e-11 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 1e-13 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 4e-12 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 4e-06 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 9e-13 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 2e-08 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 3e-07 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 4e-12 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 8e-07 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 4e-12 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 1e-11 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 3e-11 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 6e-12 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 5e-11 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 5e-08 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 8e-12 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-09 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-06 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 1e-11 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 8e-07 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 0.001 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 2e-11 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 8e-10 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 5e-07 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 6e-10 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 7e-07 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 3e-06 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 3e-09 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 2e-08 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 5e-08 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 3e-09 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 6e-09 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 1e-04 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 8e-09 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 3e-07 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 8e-09 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 9e-07 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 7e-04 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 4e-08 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 5e-07 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 7e-07 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 6e-08 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 8e-08 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 6e-06 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 5e-04 |
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 77.5 bits (190), Expect = 1e-17
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 9/119 (7%)
Query: 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERL 97
M L V + +A+ + YV +K+ N K TTI + P W Q F F RL
Sbjct: 1 MSLLCVGVKKAKFDGA---QEKFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRL 56
Query: 98 QAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGEL 156
+ V +K ++ +G + I + I + + EW L+++ A E+
Sbjct: 57 DLGLT-VEVWNKGLIWDTMVGTVWIPLRTIRQ---SNEEGPGEWLTLDSQ-AIMADSEI 110
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.1 bits (132), Expect = 7e-10
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 17/135 (12%)
Query: 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEV 419
+ +L +G+ AK + Y K N T V P W + + +E+
Sbjct: 1 MSLLCVGVKKAKFDGAQ------EKFNTYVTLKVQNVKSTTI-AVRGSQPSWEQDFMFEI 53
Query: 420 YDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTL--ETDRIYTHSYPLVALLPNGVK 477
+T+ V++ D+ +G V I L T+ + L +
Sbjct: 54 NRLDLGLTVEVWNKGL-----IWDTMVGTVWIPLRTIRQSNEEGPGEWLT---LDSQAIM 105
Query: 478 KMGEVQLAVRFTCSS 492
E+ T
Sbjct: 106 ADSEICGTKDPTFHR 120
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.8 bits (113), Expect = 3e-07
Identities = 25/129 (19%), Positives = 43/129 (33%), Gaps = 11/129 (8%)
Query: 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPF 260
L V V +A+ +++ N ++ NV T + P+W +D
Sbjct: 3 LLCVGVKKAKFDGAQEKF-NT--YVTLKVQNVKSTTIA--VRGSQPSWEQD-FMFEINRL 56
Query: 261 DDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNI--ANGEEKKD 318
D L + V +K G + +G + +PL R W L+ A+ E
Sbjct: 57 DLGLTVEVWNK-GLIWDTMVGTVWIPLRTI--RQSNEEGPGEWLTLDSQAIMADSEICGT 113
Query: 319 VRFASRICL 327
L
Sbjct: 114 KDPTFHRIL 122
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 71.7 bits (175), Expect = 2e-15
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 13/132 (9%)
Query: 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVV-DSFDPKWNEQYTWE 418
G LE+ ++SAK L + D D Y + ++ P+WNE + +
Sbjct: 9 HGTLEVVLVSAKGL---EDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFT 65
Query: 419 VYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETD-RIYTHSYPLVALLPNGVK 477
V + T + +FD G +D +G+ I L + + I +Y +V +
Sbjct: 66 VSEGTTELKAKIFD----KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV----KDEE 117
Query: 478 KMGEVQLAVRFT 489
GE+ +A+ F
Sbjct: 118 YKGEIWVALSFK 129
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 68.6 bits (167), Expect = 2e-14
Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 9/124 (7%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKG-TTIPFEKKLNPEWNQVFAFT-KERLQ 98
L V +V A+ L+ DPYV++ + + PEWN+ F FT E
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 99 AISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMF 158
+ ++ KD + D +G+ I + + + + P + +GE+
Sbjct: 72 ELKAKIFDKDVGTED-DAVGEATIPLEPVFV----EGSIPPTAYNVVKD--EEYKGEIWV 124
Query: 159 AIWF 162
A+ F
Sbjct: 125 ALSF 128
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 59.0 bits (142), Expect = 4e-11
Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 5/119 (4%)
Query: 191 SKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNE 250
S P L V ++ A+ L N + +++ K+ V+ P WNE
Sbjct: 2 SSGSSGPH-GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNE 60
Query: 251 DLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309
+F +E L + DK +++ +G +PL F+ YN+ ++
Sbjct: 61 TFIFTVSEG-TTELKAKIFDKDVGTEDDAVGEATIPLEPV---FVEGSIPPTAYNVVKD 115
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.0 bits (173), Expect = 3e-15
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 10/129 (7%)
Query: 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEV 419
+G+L++ +L A +LL D G +D +C+ + N ++T TV + +P+WN+ +T+ +
Sbjct: 5 VGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 61
Query: 420 YDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKM 479
D + V+ + VFD P +GKV I L ++ + + Y L K
Sbjct: 62 KDIHDVLEVTVFDEDGDKP----PDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFK- 114
Query: 480 GEVQLAVRF 488
G + L +
Sbjct: 115 GVIYLEMDL 123
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.6 bits (172), Expect = 3e-15
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 35 VEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFT- 93
V+ + L V++++A DL +G DP+ +++GN + T K LNPEWN+VF F
Sbjct: 2 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 61
Query: 94 KERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG-SRA 152
K+ + V + +D DF+GK+ I + I P L+ KD
Sbjct: 62 KDIHDVLEVTVFDEDGDKPP-DFLGKVAIPLLSIRDG-------QPNCYVLKNKDLEQAF 113
Query: 153 RGELMFAI 160
+G + +
Sbjct: 114 KGVIYLEM 121
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (103), Expect = 6e-06
Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 14/131 (10%)
Query: 201 YLRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPF 260
L+V V++A DL+ + + F GN L+T K +NP WN+ F +
Sbjct: 7 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTV-YKNLNPEWNKVFTFPIKDIH 65
Query: 261 DDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVR 320
D +TV D+ GD + LG++ +PL Y L+ K
Sbjct: 66 DVL-EVTVFDEDGDKPPDFLGKVAIPLLS------IRDGQPNCYVLKNKDLEQAFK---- 114
Query: 321 FASRICLRFSL 331
I L L
Sbjct: 115 --GVIYLEMDL 123
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.3 bits (161), Expect = 9e-14
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 20/125 (16%)
Query: 198 KLWY------LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVS----AKKTVNPT 247
KLW+ L V ++ A+DL ++ R ++K F KKT+ P
Sbjct: 6 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK 65
Query: 248 WNEDLMFVAAEPFDDP---LILTV--EDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAI 302
WN+ ++ + L +T+ + ++ + + E LG +++ L L
Sbjct: 66 WNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELET-----ALLDDEPH 120
Query: 303 WYNLE 307
WY L+
Sbjct: 121 WYKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.6 bits (154), Expect = 8e-13
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 19/133 (14%)
Query: 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKK-- 81
G+ + FD V L V I+ A+DL + +PYV++ + K
Sbjct: 1 GQLSIKLWFDKVGHQ--LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTV 58
Query: 82 ---LNPEWNQVFAF---TKERLQAISVELLVKDKMIVNG---DFIGKIKIDMPDIPKRVP 132
L P+WNQ F + + + +E+ + D+ V +F+G+I I++
Sbjct: 59 KKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA----- 113
Query: 133 PDSPLAPEWKRLE 145
P W +L+
Sbjct: 114 -LLDDEPHWYKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.0 bits (142), Expect = 4e-11
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 15/120 (12%)
Query: 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVA-----KYANKWVRTRTVVDSFDPKWN 412
V L + IL AK+L + + Y + RT+TV + +PKWN
Sbjct: 11 KVGHQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWN 67
Query: 413 EQYTWEVYDPYT----VITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468
+ + + ++ + ++D + + +G++ I L T D H Y L
Sbjct: 68 QTFIYSPVHRREFRERMLEITLWDQARV--REEESEFLGEILIELETALLDDE-PHWYKL 124
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.9 bits (160), Expect = 1e-13
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 6/103 (5%)
Query: 41 LYVRIVRARDLQVNQ---VTGTCDPYVEVKIG---NYKGTTIPFEKKLNPEWNQVFAFTK 94
V ++RA + + T DPYVE+ I + + T F +NP WN+ F F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 95 ERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPL 137
+ Q +E+ + D V + +G + + + P
Sbjct: 65 DPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPF 107
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.7 bits (149), Expect = 4e-12
Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 18/135 (13%)
Query: 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKY---ANKWVRTRTVVDSFDPKWNEQYTWEV 419
+ +L A ++ D T D Y + RTR + +P WNE + + +
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 420 YDPYT-VITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKK 478
V+ + + D ++ D +G +S+++ + +
Sbjct: 65 DPNQENVLEITLMDANYV-----MDETLGTATFTVSSMKVGEKKEVPFIF--------NQ 111
Query: 479 MGEVQLAVRFT-CSS 492
+ E+ L + SS
Sbjct: 112 VTEMVLEMSLEVASS 126
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (104), Expect = 4e-06
Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 15/130 (11%)
Query: 202 LRVNVIEAQDLVP---KQRNRNPEVFIKAIFGNVVL--KTTVSAKKTVNPTWNEDLMFVA 256
V V+ A + P+ +++ K T +NP WNE F+
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 257 AEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEK 316
++ L +T+ D +E LG +S + + +
Sbjct: 65 DPNQENVLEITLMDA-NYVMDETLGTATFTVSS----MKVGEKKEVPFIFN-----QVTE 114
Query: 317 KDVRFASRIC 326
+ + +
Sbjct: 115 MVLEMSLEVA 124
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 64.1 bits (155), Expect = 9e-13
Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 27/147 (18%)
Query: 22 VSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI------------- 68
++G +L ++D + L + I++AR+L G DP+V+V +
Sbjct: 5 ITGEIQLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNA 60
Query: 69 -GNYKGTTIPFEKKLNPEWNQVFAF---TKERLQAISVELLVKDKMIVNG-DFIGKIKID 123
YK T +K LNPEWNQ + + E+L ++E+ V D + DF+G++ ID
Sbjct: 61 SAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLID 120
Query: 124 MPDIPKRVPPDSPLAPEWKRLEAKDGS 150
+ P W L+ + S
Sbjct: 121 LSSTSHLDN-----TPRWYPLKEQTES 142
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.4 bits (122), Expect = 2e-08
Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 17/122 (13%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYCV--------------AKYANKWVRTRTVVDS 406
G L + IL A+ L+P D G +D + A RT+ V S
Sbjct: 18 GNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS 74
Query: 407 FDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSY 466
+P+WN+ ++ ++ + + + + +G+V I LS+ Y
Sbjct: 75 LNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWY 134
Query: 467 PL 468
PL
Sbjct: 135 PL 136
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.0 bits (113), Expect = 3e-07
Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 20/122 (16%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKT-------------TVSAKKTVNPTW 248
L +++++A++LVP+ N + F+K + T +K++NP W
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 249 NEDLMFV---AAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYN 305
N+ +++ + L +TV D + + LG +++ LS L WY
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS----TSHLDNTPRWYP 135
Query: 306 LE 307
L+
Sbjct: 136 LK 137
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (150), Expect = 4e-12
Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 2/121 (1%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAI 100
L + ++ A+ + + PYVEV + T +P+W Q + +
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVSKL 67
Query: 101 SVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEA-KDGSRARGELMFA 159
+ + + +G +D+ + K +L K+ + G+L
Sbjct: 68 HFRVWSHQTLKSD-VLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSIC 126
Query: 160 I 160
+
Sbjct: 127 L 127
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (110), Expect = 8e-07
Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 10/132 (7%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFVAAEPFD 261
L++ VI A+ K+ P +++ KT T +P W + L +
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEK-CNNTNSPKWKQPLTVIVTPVSK 66
Query: 262 DPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERNIANGEEKKDVRF 321
+ L + LG L + + + + G +K+
Sbjct: 67 LHFRVWSHQTLK--SDVLLGTAALDIYE-----TLKSNNMKLEEVVVTLQLGGDKEPT-- 117
Query: 322 ASRICLRFSLDG 333
+ L LDG
Sbjct: 118 ETIGDLSICLDG 129
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.0 bits (150), Expect = 4e-12
Identities = 24/115 (20%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYA-----NKWVRTRTVVDSFDPKWNEQY 415
VL + + AK L+PM D G +D Y K +T+T+ S +P+WNE +
Sbjct: 15 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETF 71
Query: 416 TWEVYDPY--TVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468
+++ + +++ ++D +++ +G + +S L+ + + L
Sbjct: 72 RFQLKESDKDRRLSVEIWDWDLT----SRNDFMGSLSFGISELQKAGV-DGWFKL 121
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 60.5 bits (146), Expect = 1e-11
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 12/125 (9%)
Query: 190 RSKVYVSPKLW--YLRVNVIEAQDLVPKQRNRNPEVFIKAIF----GNVVLKTTVSAKKT 243
R ++Y+ + L V V +A++LVP N + ++K + + T + K +
Sbjct: 3 RGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCS 62
Query: 244 VNPTWNEDLMFVAAEPF-DDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAI 302
+NP WNE F E D L + + D ++ + +G L +S+ L
Sbjct: 63 LNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISE-----LQKAGVDG 117
Query: 303 WYNLE 307
W+ L
Sbjct: 118 WFKLL 122
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.3 bits (143), Expect = 3e-11
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKG-----TTIPFEKKLNPEWNQVFAFT-K 94
L V + A++L G DPYV++K+ T + LNPEWN+ F F K
Sbjct: 17 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 76
Query: 95 ERLQAISVELLVKDK-MIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148
E + + + + D + DF+G + + ++ K W +L +++
Sbjct: 77 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG------VDGWFKLLSQE 125
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 61.7 bits (149), Expect = 6e-12
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 27 RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKI---GNYKGTTIPFEKKLN 83
+L S D Q L V I++A +L + GT DPYV+V + K T K LN
Sbjct: 22 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 81
Query: 84 PEWNQVFAF--TKERLQAISVELLVKDK-MIVNGDFIGKIKIDMPDIPKRVPPDSPLAPE 140
P +N+ F F L ++ + V D D IG+ K+ M + + E
Sbjct: 82 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV-----DFGHVTEE 136
Query: 141 WKRLEA 146
W+ L++
Sbjct: 137 WRDLQS 142
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.0 bits (142), Expect = 5e-11
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 13/114 (11%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYC---VAKYANKWVRTRTVVDSFDPKWNEQYTW 417
L +GI+ A EL + D GT+D Y + K T+ + +P +NEQ+T+
Sbjct: 34 NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 90
Query: 418 EVY---DPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468
+V + + V+D K IG+ ++ ++T++ + L
Sbjct: 91 KVPYSELGGKTLVMAVYDFDRFS----KHDIIGEFKVPMNTVDFGHVTEEWRDL 140
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.5 bits (120), Expect = 5e-08
Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGN--VVLKTTVSAKKTVNPTWNEDLMF--VAA 257
L V +I+A +L + ++K T +KT+NP +NE F +
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 258 EPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLE 307
E L++ V D +K + +G +P++ W +L+
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT----VDFGHVTEEWRDLQ 141
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 61.8 bits (149), Expect = 8e-12
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 17/147 (11%)
Query: 18 GGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKG---- 73
GGG + + S V L V I+ A++L+ V G DPYV++ +
Sbjct: 4 GGGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKK 63
Query: 74 -TTIPFEKKLNPEWNQVFAF--TKERLQAISVELLVKDKMIVNG-DFIGKIKIDMPDIPK 129
T + LNP +N+ F+F E++Q + V + V D + D IGK+ +
Sbjct: 64 KKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGA 123
Query: 130 RV--------PPDSPLAPEWKRLEAKD 148
+ P P+A +W L+ ++
Sbjct: 124 ELRHWSDMLANPRRPIA-QWHTLQVEE 149
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 54.8 bits (131), Expect = 2e-09
Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 14/125 (11%)
Query: 197 PKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN----VVLKTTVSAKKTVNPTWNEDL 252
P L V ++EA++L + ++K + K T K T+NP +NE
Sbjct: 22 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESF 81
Query: 253 MFV--AAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFL--------PLPAAAI 302
F + +++TV D K + +G++ + + G P A
Sbjct: 82 SFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQ 141
Query: 303 WYNLE 307
W+ L+
Sbjct: 142 WHTLQ 146
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.3 bits (109), Expect = 2e-06
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 9/108 (8%)
Query: 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVA-----KYANKWVRTRTVVDSFDPKWN 412
P G L + IL AK +K D G +D Y K +T ++ +P +N
Sbjct: 22 PTAGKLTVVILEAKN---LKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYN 78
Query: 413 EQYTWEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDR 460
E +++EV VV G K+ IGKV + ++ +
Sbjct: 79 ESFSFEVPFEQIQKVQVVVTVLDYDKIG-KNDAIGKVFVGYNSTGAEL 125
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 60.5 bits (146), Expect = 1e-11
Identities = 16/128 (12%), Positives = 43/128 (33%), Gaps = 16/128 (12%)
Query: 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-----KGTTIPFEKKLNPEWNQVFAFTK 94
FL + + P+ VK+ T + + + PEW F
Sbjct: 4 FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI 63
Query: 95 ERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARG 154
+ I + L+ + + ++ + + + +R ++ A W L+ +
Sbjct: 64 YEGRVIQIVLMRAAED-----PMSEVTVGVSVLAERCKKNNGKAEFWLDLQ------PQA 112
Query: 155 ELMFAIWF 162
+++ + +
Sbjct: 113 KVLMCVQY 120
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.7 bits (110), Expect = 8e-07
Identities = 14/126 (11%), Positives = 39/126 (30%), Gaps = 19/126 (15%)
Query: 368 LSAKELLPMKSRDGRGTTDAYCVAKY-----ANKWVRTRTVVDSFDPKWNEQYTWEVYDP 422
++ EL +++ D + +C K ++ + P+W + +
Sbjct: 9 FNSYELGSLQAEDD--ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI-YE 65
Query: 423 YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEV 482
VI +V+ + +G + + + L + +V
Sbjct: 66 GRVIQIVLMRAAEDP---MSEVTVGVSVLAERCKKNNGKAEFWLDL--------QPQAKV 114
Query: 483 QLAVRF 488
+ V++
Sbjct: 115 LMCVQY 120
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.4 bits (86), Expect = 0.001
Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 14/117 (11%)
Query: 196 SPKLWYLRVNVIEAQDLVPKQRNRNP--EVFIKAIFGNVVLKTTVSAKKTVNPTWNEDLM 253
+P L + N E L + P V +K KT V K T+ P W
Sbjct: 2 APFL-RISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFD 60
Query: 254 FVAAEPFDDPLILTVEDKLGDNKEEC---LGRLVLPLSKAGKRFLPLPAAAIWYNLE 307
+ + + D E + L K + A W +L+
Sbjct: 61 A--HIYEGRVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGK------AEFWLDLQ 109
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 60.1 bits (145), Expect = 2e-11
Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 17/136 (12%)
Query: 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFE 79
R L S L V +++AR L + V+G DPYV+V + + K T +
Sbjct: 1 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK 60
Query: 80 KKLNPEWNQVFAF--TKERLQAISVELLVKDK-MIVNGDFIGKIKIDMPDIPKRVP---- 132
N +N++F F E L+ ISVE LV D + IG++ +
Sbjct: 61 CTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKE 120
Query: 133 ----PDSPLAPEWKRL 144
P +A +W L
Sbjct: 121 ICDFPRRQIA-KWHML 135
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.5 bits (133), Expect = 8e-10
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 14/116 (12%)
Query: 190 RSKVYVSPKLWY------LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVL----KTTVS 239
R ++ VS L Y L V V++A+ L + + ++K + K T
Sbjct: 1 RGELLVS--LCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHV 58
Query: 240 AKKTVNPTWNEDLMFVAAEPFDDP--LILTVEDKLGDNKEECLGRLVLPLSKAGKR 293
K T N +NE +F + + V D ++ E +GRLVL + G
Sbjct: 59 KKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSG 114
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.4 bits (112), Expect = 5e-07
Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 11/118 (9%)
Query: 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKW-----VRTRTVVDSFDPKWN 412
L + +L A+ L D G +D Y + +T + + +N
Sbjct: 12 STTNTLTVVVLKARHLPKS---DVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFN 68
Query: 413 EQYTWEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVA 470
E + +++ V F G+++ IG++ + + + H +
Sbjct: 69 ELFVFDIPCESLEEISVEF-LVLDSERGSRNEVIGRLVLGATAEGSG--GGHWKEICD 123
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.5 bits (133), Expect = 6e-10
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 202 LRVNVIEAQDL--VPKQRNRNPEVFIKAIF-----GNVVLKTTVSAKKTVNPTWNEDLMF 254
LRV +I Q L V K +N + + +T V NP W+ + F
Sbjct: 6 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65
Query: 255 VAAEPFDDPLILTVEDKLGDNKEECLGRLVLPL--SKAGKRFLPL 297
P + VED +K + +G+ +P K G R + L
Sbjct: 66 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHL 110
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.7 bits (110), Expect = 7e-07
Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 9/95 (9%)
Query: 41 LYVRIVRARDLQV--NQVTGTCDPYVEVKIGNYKG------TTIPFEKKLNPEWNQVFAF 92
L VRI+ + L DP V V+I T + NP W+ F F
Sbjct: 6 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65
Query: 93 TKERLQAISVELLVKDKMIVNGD-FIGKIKIDMPD 126
V +V+D + + FIG+ I
Sbjct: 66 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNS 100
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.1 bits (106), Expect = 3e-06
Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 20/141 (14%)
Query: 356 WPPVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYA-----NKWVRTRTVVDS-FDP 409
W P L + I+S ++L P +++ D + + +T + ++ F+P
Sbjct: 1 WRPER--LRVRIISGQQL-PKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNP 57
Query: 410 KWNEQYTWEVYDPYTVITLV-VFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468
+W+ ++ +EV P + V D K+ IG+ I ++ Y
Sbjct: 58 RWDMEFEFEVTVPDLALVRFMVEDYDSSS----KNDFIGQSTIPWNS------LKQGYRH 107
Query: 469 VALLPNGVKKMGEVQLAVRFT 489
V LL + L V+ +
Sbjct: 108 VHLLSKNGDQHPSATLFVKIS 128
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 54.1 bits (129), Expect = 3e-09
Identities = 27/143 (18%), Positives = 50/143 (34%), Gaps = 24/143 (16%)
Query: 361 GVLELGILSAKELLPMK--------SRDGRGTTDAYCVAKYAN-KWVRTRTVVDSFDPKW 411
G+L++ I A L P R D Y + + +T T + P W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 412 NEQYTWEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTL--ETDRIYTHSYPLV 469
++++ +V + I L VF + + D + I+ L R + L
Sbjct: 66 HDEFVTDVCNGRK-IELAVFHDAPIGY----DDFVANCTIQFEELLQNGSRHFEDWIDL- 119
Query: 470 ALLPNGVKKMGEVQLAVRFTCSS 492
+ G+V + + + SS
Sbjct: 120 -------EPEGKVYVIIDLSGSS 135
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 51.4 bits (122), Expect = 2e-08
Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 16/117 (13%)
Query: 41 LYVRIVRARDLQ-----------VNQVTGTCDPYVEVKIGNYK-GTTIPFEKKLNPEWNQ 88
L ++I A L+ T DPY+ + + + + G T +K +P W+
Sbjct: 8 LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHD 67
Query: 89 VFAFTKERLQAISVELLVKDKMIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145
F + I + + + + DF+ I ++ + S +W LE
Sbjct: 68 EFVTDVCNGRKIELAVFHDAPIGYD-DFVANCTIQFEELLQN---GSRHFEDWIDLE 120
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 50.3 bits (119), Expect = 5e-08
Identities = 16/118 (13%), Positives = 42/118 (35%), Gaps = 15/118 (12%)
Query: 201 YLRVNVIEAQDLVP-----------KQRNRNPEVFIKAIFGNVVLKTTVSAKKTVNPTWN 249
L++ + EA L P + + + +I + + T + +KT +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 250 EDLMFVAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLE 307
++ + L + + +G + + + + + + W +LE
Sbjct: 67 DEFVTDVCNGRKIELAVFHDAPIGYD--DFVANCTIQFEELLQN--GSRHFEDWIDLE 120
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.7 bits (128), Expect = 3e-09
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 17/137 (12%)
Query: 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFE 79
R ++ S Q L V I+R L G DP+V++ + K T +
Sbjct: 1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK 60
Query: 80 KKLNPEWNQVFAF--TKERLQAISVELLVKDKMIVNG-DFIGKIKIDMPDIPKRVP---- 132
K LNPE+N+ F + L S+++ V D I D+IG ++ + +R+
Sbjct: 61 KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYE 120
Query: 133 ----PDSPLAPEWKRLE 145
D + W +L+
Sbjct: 121 CLKNKDKKIE-RWHQLQ 136
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.9 bits (126), Expect = 6e-09
Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 16/130 (12%)
Query: 190 RSKVYVS----PKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIF----GNVVLKTTVSAK 241
R K+ VS + L V +I L N + F+K G T K
Sbjct: 1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK 60
Query: 242 KTVNPTWNEDLMF--VAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPA 299
KT+NP +NE+ + ++ L ++V D + +G L +S G+R
Sbjct: 61 KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERL----- 115
Query: 300 AAIWYNLERN 309
WY +N
Sbjct: 116 -KHWYECLKN 124
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.0 bits (95), Expect = 1e-04
Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 11/116 (9%)
Query: 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVA-----KYANKWVRTRTVVDSFDPKWN 412
G L +GI+ L M D G +D + +T+ + +P++N
Sbjct: 12 TQQGGLIVGIIRCVHLAAM---DANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFN 68
Query: 413 EQYTWEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468
E++ +++ + + G + IG ++ +S H Y
Sbjct: 69 EEFFYDIKHSDLAKKSLDIS-VWDYDIGKSNDYIGGCQLGISAKGERL--KHWYEC 121
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.6 bits (125), Expect = 8e-09
Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 17/140 (12%)
Query: 18 GGGRVSGRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKG---- 73
G + + +D Q L+V + A + G CD YV+ + N G
Sbjct: 7 GSWNQAPKLHYCLDYD--CQKAELFVTRLEAVTSNHD---GGCDCYVQGSVANRTGSVEA 61
Query: 74 TTIPFEKKLNPEWNQVFAF--TKERLQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKR 130
T +++L+ W + +E L ++ L ++ G++++ +
Sbjct: 62 QTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVP 121
Query: 131 VPPDSPLAPEWKRLEAKDGS 150
+ +W L+ S
Sbjct: 122 LGAA-----QWGELKTSGPS 136
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (113), Expect = 3e-07
Identities = 16/112 (14%), Positives = 28/112 (25%), Gaps = 11/112 (9%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKW----VRTRTVVDSFDPKWNEQYT 416
L + L A + G D Y AN+ +T W E
Sbjct: 26 AELFVTRLEAVTS------NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLV 79
Query: 417 WEVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPL 468
+ + + ++ S G++R+ L L
Sbjct: 80 LPLAEEELPTATLTL-TLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.3 bits (124), Expect = 8e-09
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 9/125 (7%)
Query: 27 RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVE---VKIGNYKGTTIPFEKKLN 83
R++ + + + L VRI++A DL G DPYV+ + K T K LN
Sbjct: 6 RISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLN 65
Query: 84 PEWNQVFAF--TKERLQAISVELLVKDK-MIVNGDFIGKIKIDMPDIPKRVPPDSPLAPE 140
P +N+ F F L + V D D IG++ +D PPD PL
Sbjct: 66 PIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL--- 122
Query: 141 WKRLE 145
W+ +
Sbjct: 123 WRDIL 127
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.5 bits (109), Expect = 9e-07
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNV--VLKTTVSAKKTVNPTWNEDLMFV--AA 257
L V +++A DL K N + ++K T +KT+NP +NE F A
Sbjct: 20 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 79
Query: 258 EPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLE 307
E L +V D ++ + +G++VL P +W ++
Sbjct: 80 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ--PPDRPLWRDIL 127
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.0 bits (87), Expect = 7e-04
Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 3/113 (2%)
Query: 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTW 417
L + IL A +L S + K +T+ + +P +NE + +
Sbjct: 15 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF 74
Query: 418 EVYDPYTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIY--THSYPL 468
V + F + ++ IG+V + ++ +
Sbjct: 75 SVPLAELAQRKLHFS-VYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDI 126
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.5 bits (120), Expect = 4e-08
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 23 SGRERLTSSFDLVEQMEFLYVRIVRARDLQV-NQVTGTCDPYVEVKI---GNYKGTTIPF 78
SG L S + + + V I AR L ++ + T DPY+++ I +K T
Sbjct: 6 SGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVL 65
Query: 79 EKKLNPEWNQVFAF---TKERLQAISVELLVKDK-MIVNGDFIGKIKIDMPDIP 128
K L+P +++ F F ++Q +++ + D IG++ I + I
Sbjct: 66 RKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE 119
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (112), Expect = 5e-07
Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 11/112 (9%)
Query: 202 LRVNVIEAQDLVPKQRNRNPE---VFIKAIFGNVVLKTTVSAKKTVNPTWNEDLMFV--- 255
VN+ EA+ L + + + T +KT++P ++E F
Sbjct: 24 FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP 83
Query: 256 AAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLE 307
+ + L T+ ++++ +G +++PLS + L + N E
Sbjct: 84 YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSG-----IELSEGKMLMNRE 130
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (111), Expect = 7e-07
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKY---ANKWVRTRTVVDSFDPKWNEQYTW 417
+ I A+ L M T+D Y V+TR + + DP ++E +T+
Sbjct: 22 KAFVVNIKEARGLPAMDE--QSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF 79
Query: 418 EVYDP----YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLE 457
+ + +D IG+V I LS +E
Sbjct: 80 YGIPYTQIQELALHFTILSFDRFS----RDDIIGEVLIPLSGIE 119
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.2 bits (119), Expect = 6e-08
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 8/112 (7%)
Query: 27 RLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-----KGTTIPFEKK 81
L S + L V I++A +L+ +TG DPYV+ + + K T +
Sbjct: 8 ELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNT 67
Query: 82 LNPEWNQVFAF--TKERLQAISVELLVKDKMIVNG-DFIGKIKIDMPDIPKR 130
LNP +N+ F E ++ + + + V D + + IG ++
Sbjct: 68 LNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH 119
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.8 bits (118), Expect = 8e-08
Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 11/119 (9%)
Query: 197 PKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN----VVLKTTVSAKKTVNPTWNEDL 252
P L V +I+A +L + ++KA + + + T K T+NPT+NE L
Sbjct: 17 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEAL 76
Query: 253 MF--VAAEPFDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309
+F + L + V D E +G + A W + N
Sbjct: 77 VFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH-----GREHWAEMLAN 130
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.8 bits (103), Expect = 6e-06
Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
Query: 202 LRVNVIEAQDLVPKQRNRNPEVFIKAIFGNVVLK---TTVSAKKTVNPTWNEDLMFVAAE 258
L + VI Q L + EV + + G+ + + ++NP W E+ E
Sbjct: 3 LSITVISGQFLSERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVF--E 60
Query: 259 PFDDPLILTVEDKLGDNKEECLGRLVLPLS--KAGKRFLPL 297
P + ++ + + + LG ++P++ +G L L
Sbjct: 61 KILMPELASLRVAVMEEGNKFLGHRIIPINALNSGYHHLCL 101
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (89), Expect = 5e-04
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 17/94 (18%)
Query: 41 LYVRIVRARDLQVNQVTGTCDPYVEVKIG--------NYKGTTIPFEKKLNPEWNQ--VF 90
L + ++ + L + YVEV++ Y+ P +NP W +
Sbjct: 3 LSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 91 AFTKERLQAISVELLVKDKMIVNGDFIGKIKIDM 124
+ S+ + V ++ F+G I +
Sbjct: 59 FEKILMPELASLRVAVMEE---GNKFLGHRIIPI 89
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 768 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.86 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.86 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.8 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.79 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.78 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.77 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.76 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.76 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.76 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.75 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.75 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.74 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.74 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.74 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.74 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.73 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.73 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.72 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.72 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.71 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.71 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.71 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.68 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.68 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.67 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.66 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.65 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.65 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.65 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.64 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.64 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.64 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.63 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.61 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.6 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.58 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.56 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.5 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.42 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.29 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 94.58 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 93.93 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=7.6e-22 Score=176.93 Aligned_cols=120 Identities=29% Similarity=0.465 Sum_probs=106.8
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CC
Q 004208 36 EQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NG 114 (768)
Q Consensus 36 ~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d 114 (768)
+++|.|+|+|++|++|+.+|..|.+||||++++++++++|+++++|.||+|||+|.|.+.+. ...|.|+|||++.. +|
T Consensus 3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~~d 81 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGDKPP 81 (126)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETTEEE
T ss_pred CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCCcCc
Confidence 47899999999999999999999999999999999999999999999999999999999876 57899999999988 89
Q ss_pred ceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCC-ccceEEEEEEEEc
Q 004208 115 DFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGS-RARGELMFAIWFG 163 (768)
Q Consensus 115 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~i~~~ 163 (768)
++||++.++|.++..+ ..+|+.|...... ..+|+|.+++.+.
T Consensus 82 ~~lG~~~i~l~~l~~~-------~~~~~~l~~~~~~~~~~G~i~l~~~~i 124 (126)
T d2ep6a1 82 DFLGKVAIPLLSIRDG-------QPNCYVLKNKDLEQAFKGVIYLEMDLI 124 (126)
T ss_dssp EECCBCEEEGGGCCSS-------CCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred ceEEEEEEEHHHCCCC-------CceEEEccccCCCCceeEEEEEEEEEE
Confidence 9999999999998654 3689988766533 3679999988763
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=7.1e-22 Score=177.11 Aligned_cols=122 Identities=26% Similarity=0.469 Sum_probs=108.1
Q ss_pred CeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCC
Q 004208 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLH 437 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~ 437 (768)
+++|.|+|+|++|+||+++ +..|++||||++++|++.++|++++++.||.|||.|.|.+.++.+.|.|+|||++.++
T Consensus 3 ~~~G~L~V~v~~A~~L~~~---d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~ 79 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDK 79 (126)
T ss_dssp CCSEEEEEEEEEEESCCCS---SSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTE
T ss_pred CccEEEEEEEEEeECCCCC---CCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCc
Confidence 4689999999999999985 6788999999999999999999999999999999999999988889999999998865
Q ss_pred CCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEEE
Q 004208 438 PGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRFT 489 (768)
Q Consensus 438 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 489 (768)
+|++||++.|+|+++..+. .+||+|......+ +..|+|+|++.+.
T Consensus 80 ----~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~i 124 (126)
T d2ep6a1 80 ----PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLI 124 (126)
T ss_dssp ----EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEE
T ss_pred ----CcceEEEEEEEHHHCCCCC--ceEEEccccCCCC-ceeEEEEEEEEEE
Confidence 7899999999999998876 5799887655433 3459999999884
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.80 E-value=1.9e-19 Score=163.51 Aligned_cols=122 Identities=24% Similarity=0.306 Sum_probs=106.0
Q ss_pred CeeeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeecccc-CCCCCccccEEEEEEeCCCcEEEEEEEeCCCC
Q 004208 358 PVIGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVV-DSFDPKWNEQYTWEVYDPYTVITLVVFDNCHL 436 (768)
Q Consensus 358 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~-~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~ 436 (768)
.+.|.|+|+|++|+||+.. +..|++||||+++++++..+|++++ ++.||.|||.|.|.+.++...|.|+|||++.+
T Consensus 7 ~p~G~L~V~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~ 83 (136)
T d1wfja_ 7 GPHGTLEVVLVSAKGLEDA---DFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG 83 (136)
T ss_dssp CCEEEEEEEEEEEEECSSC---CSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred CCcEEEEEEEEEeeCCCCC---CCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCC
Confidence 5689999999999999984 6788999999999999999999987 58899999999999998888899999999986
Q ss_pred CCCCCCCCceEEEEEecccccc-CceeeeeEeeeecCCCCcccccEEEEEEEEEe
Q 004208 437 HPGGAKDSRIGKVRIRLSTLET-DRIYTHSYPLVALLPNGVKKMGEVQLAVRFTC 490 (768)
Q Consensus 437 ~~~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 490 (768)
+ +|++||++.|+|.++.. +.....||+|... .+..|+|+|.++|.+
T Consensus 84 ~----~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~----~~~~G~i~l~l~~~p 130 (136)
T d1wfja_ 84 T----EDDAVGEATIPLEPVFVEGSIPPTAYNVVKD----EEYKGEIWVALSFKP 130 (136)
T ss_dssp T----TTCCSEEEEEESHHHHHHSEEEEEEEEEEET----TEEEEEEEEEEEEEE
T ss_pred C----CCCEEEEEEEEhHHhcccCCcCcEEEEecCC----CccCEEEEEEEEEEe
Confidence 5 89999999999999754 4445679988642 345699999999964
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.79 E-value=6.9e-20 Score=166.39 Aligned_cols=123 Identities=22% Similarity=0.312 Sum_probs=105.4
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeec-CCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-C
Q 004208 36 EQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFE-KKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-N 113 (768)
Q Consensus 36 ~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~ 113 (768)
.+.|.|+|+|++|++|+..|..|++||||++++++++.+|++++ ++.||+|||+|.|.+.+. ...|.|+|||++.. +
T Consensus 7 ~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d~d~~~~ 85 (136)
T d1wfja_ 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDKDVGTE 85 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECCSSSCTT
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEEecCCCC
Confidence 36799999999999999999999999999999999988998886 589999999999999875 56799999999998 8
Q ss_pred CceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEccc
Q 004208 114 GDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGTQ 165 (768)
Q Consensus 114 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~~ 165 (768)
|++||++.|+|.++.... .....|+.+... ++..|+|.+++.|.+.
T Consensus 86 d~~iG~~~i~L~~l~~~~----~~~~~~~~l~~~--~~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 86 DDAVGEATIPLEPVFVEG----SIPPTAYNVVKD--EEYKGEIWVALSFKPS 131 (136)
T ss_dssp TCCSEEEEEESHHHHHHS----EEEEEEEEEEET--TEEEEEEEEEEEEEEC
T ss_pred CCEEEEEEEEhHHhcccC----CcCcEEEEecCC--CccCEEEEEEEEEEeC
Confidence 999999999999875431 224689988653 3467999999999753
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.4e-19 Score=160.60 Aligned_cols=116 Identities=21% Similarity=0.278 Sum_probs=100.0
Q ss_pred cEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC
Q 004208 39 EFLYVRIVRARDLQVN---QVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV 112 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~---d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~ 112 (768)
+.|+|+|++|+||+.. |..|.+||||++.+++ ++.+|++++++.||+|||+|.|.+.+.....|.|+|||++..
T Consensus 3 ~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~~ 82 (126)
T d1rlwa_ 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV 82 (126)
T ss_dssp EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred cEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCCC
Confidence 6899999999999864 3468899999999986 678999999999999999999999887778999999999988
Q ss_pred CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEc
Q 004208 113 NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFG 163 (768)
Q Consensus 113 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~ 163 (768)
+|++||++.++|.++..+. ....||+|.+. ..|+|.+++.+.
T Consensus 83 ~d~~lG~~~i~L~~l~~~~-----~~~~~~~L~~~----~~g~i~~~l~~~ 124 (126)
T d1rlwa_ 83 MDETLGTATFTVSSMKVGE-----KKEVPFIFNQV----TEMVLEMSLEVA 124 (126)
T ss_dssp CCEEEEEEEEEGGGSCTTC-----EEEEEEEETTT----EEEEEEEEEECC
T ss_pred CCCeEEEEEEEHHHccCCC-----eEEEEEEccCC----CeEEEEEEEEEE
Confidence 9999999999999997653 35789999764 248888877654
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=9.3e-19 Score=156.65 Aligned_cols=117 Identities=15% Similarity=0.246 Sum_probs=99.3
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC---eeeeeccccCCCCCccccEEEEEEeCCC-cEEEEEEEeCCCC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN---KWVRTRTVVDSFDPKWNEQYTWEVYDPY-TVITLVVFDNCHL 436 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~---~~~~T~~~~~t~nP~wne~~~~~v~~~~-~~l~v~v~d~~~~ 436 (768)
+.|+|+|++|+||+.....|..|++||||++.+++ +..||+++.++.||.|||.|.|.+.++. ..|.|+|||++..
T Consensus 3 ~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~~ 82 (126)
T d1rlwa_ 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV 82 (126)
T ss_dssp EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred cEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCCC
Confidence 57999999999998743234568899999999976 6689999999999999999999998764 5899999999863
Q ss_pred CCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 437 HPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 437 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
+|++||++.|+|+++..++....||+|.. ...|.|++.+++
T Consensus 83 -----~d~~lG~~~i~L~~l~~~~~~~~~~~L~~------~~~g~i~~~l~~ 123 (126)
T d1rlwa_ 83 -----MDETLGTATFTVSSMKVGEKKEVPFIFNQ------VTEMVLEMSLEV 123 (126)
T ss_dssp -----CCEEEEEEEEEGGGSCTTCEEEEEEEETT------TEEEEEEEEEEC
T ss_pred -----CCCeEEEEEEEHHHccCCCeEEEEEEccC------CCeEEEEEEEEE
Confidence 58899999999999999988899999942 234888887776
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=1.1e-18 Score=156.73 Aligned_cols=118 Identities=30% Similarity=0.418 Sum_probs=98.1
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeeeeEEEEEec--cCC
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN---YKGTTIPFEKKLNPEWNQVFAFTKE--RLQ 98 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~Wne~f~f~~~--~~~ 98 (768)
|...+++.|+.. .+.|.|+|++|+||+.++..|.+||||++++.+ ++++|+++++|.||+|||+|.|.+. +..
T Consensus 5 G~l~~sl~y~~~--~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~ 82 (130)
T d1dqva1 5 GRISFALRYLYG--SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELA 82 (130)
T ss_dssp CEEEEEEECCSS--SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGS
T ss_pred EEEEEEEEEECC--CCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcC
Confidence 356788889864 579999999999999999999999999999953 5689999999999999999999974 445
Q ss_pred CceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEccc
Q 004208 99 AISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEA 146 (768)
Q Consensus 99 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 146 (768)
...|.|+|||++.+ +|++||++.|++.......+.+ ...|++|.+
T Consensus 83 ~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~---~~~W~~L~~ 128 (130)
T d1dqva1 83 QRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPD---RPLWRDILE 128 (130)
T ss_dssp SCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSS---CCCCEECBC
T ss_pred CCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCC---CcEEEeccc
Confidence 67899999999988 8999999999876543332222 357999986
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.3e-18 Score=156.67 Aligned_cols=122 Identities=15% Similarity=0.154 Sum_probs=96.9
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCC-CCcee
Q 004208 39 EFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIV-NGDFI 117 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~-~d~~l 117 (768)
+.|.|+|++|++|+.++..+++||||+++++++..+|+++++|.||+|||.|.|.+.+ ...|.|+|||++.+ +|++|
T Consensus 6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~d~~i 83 (133)
T d2nq3a1 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLL 83 (133)
T ss_dssp EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCCEEE
T ss_pred eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCCCceE
Confidence 6899999999999988888899999999999999999999999999999999999875 46899999999998 89999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccCCC-CccceEEEEEEEE
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDG-SRARGELMFAIWF 162 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~i~~ 162 (768)
|++.++|.++.............|+.+....+ ....|+|.+.+..
T Consensus 84 G~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~ 129 (133)
T d2nq3a1 84 GTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG 129 (133)
T ss_dssp EEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred EEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEee
Confidence 99999999874332111112234455554433 3467999887654
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=1.3e-18 Score=159.13 Aligned_cols=115 Identities=29% Similarity=0.431 Sum_probs=99.8
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeEeeeecCCCCCeeeeEEEEEec--cCCC
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIG---NYKGTTIPFEKKLNPEWNQVFAFTKE--RLQA 99 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~Wne~f~f~~~--~~~~ 99 (768)
...+++.|+.. .+.|.|+|++|+||+.++..|.+||||++++. .++.+|+++++|.||+|||+|.|.+. ++..
T Consensus 22 ~l~~sl~y~~~--~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~ 99 (143)
T d1rsya_ 22 KLQYSLDYDFQ--NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG 99 (143)
T ss_dssp EEEEEEEEETT--TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTT
T ss_pred EEEEEEEEeCC--CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCC
Confidence 56788889875 47999999999999999999999999999993 36689999999999999999999874 4456
Q ss_pred ceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEccc
Q 004208 100 ISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEA 146 (768)
Q Consensus 100 ~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 146 (768)
..|.|+|||++.. ++++||++.|+|.++..+. ...+|++|+.
T Consensus 100 ~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~-----~~~~W~~L~s 142 (143)
T d1rsya_ 100 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQS 142 (143)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSS-----CEEEEEECBC
T ss_pred ceEEEEEEEcCCCCCCcEEEEEEEEchhccCCC-----CCccEEeCCC
Confidence 7899999999988 8999999999999997653 2578999974
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=2.6e-19 Score=163.95 Aligned_cols=116 Identities=32% Similarity=0.545 Sum_probs=99.0
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--------------eeeEeeeecCCCCCeeeeE
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN--------------YKGTTIPFEKKLNPEWNQV 89 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~--------------~~~~T~~~~~t~nP~Wne~ 89 (768)
|..++++.|+ .+.|.|+|++|+||+.+|..|.+||||++++.+ ++.+|++++++.||+|||+
T Consensus 7 G~l~lsl~y~----~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~ 82 (142)
T d1rh8a_ 7 GEIQLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQT 82 (142)
T ss_dssp CEEEEEEEEE----TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEE
T ss_pred eEEEEEEEEe----CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEE
Confidence 4578888886 478999999999999999999999999999842 2367999999999999999
Q ss_pred EEEEe---ccCCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC
Q 004208 90 FAFTK---ERLQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148 (768)
Q Consensus 90 f~f~~---~~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 148 (768)
|.|.. .++....|.|+|||++.+ +|++||++.|+|.++.... ...+||+|.++.
T Consensus 83 f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~-----~~~~W~~L~~~~ 140 (142)
T d1rh8a_ 83 VIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD-----NTPRWYPLKEQT 140 (142)
T ss_dssp EEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGT-----TCCEEEECBCCC
T ss_pred EEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCC-----CceEEEECcCcC
Confidence 99973 344567899999999988 8999999999999997653 257999999865
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.75 E-value=3.1e-18 Score=154.84 Aligned_cols=116 Identities=22% Similarity=0.369 Sum_probs=98.4
Q ss_pred ccEEEEEEEEeecCCCCC-----------CCCCCCcEEEEEECCee-eEeeeecCCCCCeeeeEEEEEeccCCCceEEEE
Q 004208 38 MEFLYVRIVRARDLQVNQ-----------VTGTCDPYVEVKIGNYK-GTTIPFEKKLNPEWNQVFAFTKERLQAISVELL 105 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d-----------~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~ 105 (768)
.|.|+|+|++|++|++.+ ..+.+||||++++++++ .+|++++++.||+|||+|.|.+.+ ...|.|+
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~--~~~l~i~ 82 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN--GRKIELA 82 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEEEE
T ss_pred EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec--CCceEEE
Confidence 589999999999998753 46779999999999865 689999999999999999999875 4689999
Q ss_pred EEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcc
Q 004208 106 VKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGT 164 (768)
Q Consensus 106 V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~ 164 (768)
|||++.+ +|++||++.|+|.++..... .....|++|++ .|+|++.+.+.+
T Consensus 83 V~d~~~~~~d~~iG~~~i~l~~l~~~~~---~~~~~w~~L~p------~G~v~l~v~~~~ 133 (136)
T d1gmia_ 83 VFHDAPIGYDDFVANCTIQFEELLQNGS---RHFEDWIDLEP------EGKVYVIIDLSG 133 (136)
T ss_dssp EEECCSSSSCEEEEEEEEEHHHHTSTTC---SEEEEEEECBS------SCEEEEEEEEEE
T ss_pred EEEecCCCCceeEEEEEEEHHHhhhcCC---cceeEEEeCCC------CcEEEEEEEEEe
Confidence 9999998 89999999999999876532 22568999974 388888887753
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=2e-18 Score=155.72 Aligned_cols=104 Identities=27% Similarity=0.486 Sum_probs=90.7
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeEeeeecCCCCCeeeeEEEEEeccC-CCceEEEEEEEcCC
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKI-----GNYKGTTIPFEKKLNPEWNQVFAFTKERL-QAISVELLVKDKMI 111 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~Wne~f~f~~~~~-~~~~L~i~V~d~~~ 111 (768)
.+.|.|+|++|+||+.+|..|.+||||++++ +..+++|+++++|.||+|||+|.|.+... ....|.|+|||+|.
T Consensus 14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 93 (132)
T d1a25a_ 14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 93 (132)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence 3789999999999999999999999999999 33578999999999999999999997643 24679999999999
Q ss_pred C-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccC
Q 004208 112 V-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAK 147 (768)
Q Consensus 112 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 147 (768)
+ +|++||++.|+|.++..+. ..+||+|.+.
T Consensus 94 ~~~d~~iG~~~i~l~~l~~~~------~~~W~~L~~~ 124 (132)
T d1a25a_ 94 TSRNDFMGSLSFGISELQKAG------VDGWFKLLSQ 124 (132)
T ss_dssp SSCCEEEEEEEEEHHHHTTCC------EEEEEECBCH
T ss_pred CCCCcEeEEEEEeHHHcCCCC------CCeEEECCCC
Confidence 8 8999999999999986542 4689999764
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=9.6e-18 Score=148.72 Aligned_cols=102 Identities=26% Similarity=0.445 Sum_probs=88.1
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCCcee
Q 004208 38 MEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGNYKGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNGDFI 117 (768)
Q Consensus 38 ~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d~~l 117 (768)
|+.|.|+|++|++|.++| ++||||++++++++.+|++++ +.||+|||+|.|.+.+. ...|.|+|||++..+|++|
T Consensus 1 ~~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~~d~~l 75 (128)
T d2cjta1 1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLIWDTMV 75 (128)
T ss_dssp CEEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSSCEEEE
T ss_pred CeEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCcCCcce
Confidence 578999999999998765 689999999999999999886 55999999999999887 5789999999988899999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCeEEEcccC
Q 004208 118 GKIKIDMPDIPKRVPPDSPLAPEWKRLEAK 147 (768)
Q Consensus 118 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 147 (768)
|++.|+|.++..... ....+|++|..+
T Consensus 76 G~~~I~L~~l~~~~~---~~~~~W~~L~~~ 102 (128)
T d2cjta1 76 GTVWIPLRTIRQSNE---EGPGEWLTLDSQ 102 (128)
T ss_dssp EEEEEEGGGSCBCSS---CCCCEEEECBC-
T ss_pred EEEEEEehhhccCCC---CCCCeeEECCcc
Confidence 999999999965432 234689999754
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.74 E-value=7.9e-18 Score=152.14 Aligned_cols=119 Identities=22% Similarity=0.318 Sum_probs=100.4
Q ss_pred eeEEEEEEEEecCCCCCCC--------CCCCCCcCcEEEEEecCee-eeeccccCCCCCccccEEEEEEeCCCcEEEEEE
Q 004208 360 IGVLELGILSAKELLPMKS--------RDGRGTTDAYCVAKYANKW-VRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVV 430 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~--------~~~~g~~dpyv~v~~g~~~-~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v 430 (768)
.|.|+|+|++|+||++++. ....+.+||||++++|++. .+|++++++.||.|||.|.|++.+ ...|.|+|
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l~i~V 83 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-GRKIELAV 83 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEE
T ss_pred EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-CCceEEEE
Confidence 5899999999999987531 1245789999999999866 589999999999999999999975 35899999
Q ss_pred EeCCCCCCCCCCCCceEEEEEeccccccC--ceeeeeEeeeecCCCCcccccEEEEEEEEEec
Q 004208 431 FDNCHLHPGGAKDSRIGKVRIRLSTLETD--RIYTHSYPLVALLPNGVKKMGEVQLAVRFTCS 491 (768)
Q Consensus 431 ~d~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 491 (768)
||++.++ +|++||.+.|+|+++..+ .....|++|. ..|+|++++.+++.
T Consensus 84 ~d~~~~~----~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------p~G~v~l~v~~~~~ 134 (136)
T d1gmia_ 84 FHDAPIG----YDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSGS 134 (136)
T ss_dssp EECCSSS----SCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEEE
T ss_pred EEecCCC----CceeEEEEEEEHHHhhhcCCcceeEEEeCC--------CCcEEEEEEEEEeC
Confidence 9999865 899999999999998654 3467899984 24999999999765
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=1.4e-17 Score=149.54 Aligned_cols=117 Identities=26% Similarity=0.363 Sum_probs=94.1
Q ss_pred cEEEEEEEEeecCCC--CCCCCCCCcEEEEEEC-----CeeeEeeeecCC-CCCeeeeEEEEEeccCCCceEEEEEEEcC
Q 004208 39 EFLYVRIVRARDLQV--NQVTGTCDPYVEVKIG-----NYKGTTIPFEKK-LNPEWNQVFAFTKERLQAISVELLVKDKM 110 (768)
Q Consensus 39 ~~L~V~i~~a~~L~~--~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t-~nP~Wne~f~f~~~~~~~~~L~i~V~d~~ 110 (768)
..|.|+|++|++|+. .+.++.+||||+|++. .++.+|++++++ .||+|||+|.|.+.......|.|+|||+|
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d 83 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD 83 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence 479999999999975 4567889999999984 367889887655 79999999999987665678999999999
Q ss_pred CC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEEEc
Q 004208 111 IV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIWFG 163 (768)
Q Consensus 111 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~~~ 163 (768)
.. +|++||++.|+|..+..+ ..|++|.+..|.. ..++|.+.+.+.
T Consensus 84 ~~~~d~~iG~~~i~l~~l~~g--------~~~~~L~~~~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 84 SSSKNDFIGQSTIPWNSLKQG--------YRHVHLLSKNGDQHPSATLFVKISIQ 130 (131)
T ss_dssp TTTCCEEEEEEEEEGGGBCCE--------EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred CCCCCcEEEEEEEEEeccCCC--------CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence 98 899999999999988643 5799998887754 457788777653
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=1e-17 Score=150.89 Aligned_cols=103 Identities=23% Similarity=0.433 Sum_probs=90.1
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe-----cCeeeeeccccCCCCCccccEEEEEEeCC--CcEEEEEEEeC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKY-----ANKWVRTRTVVDSFDPKWNEQYTWEVYDP--YTVITLVVFDN 433 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-----g~~~~~T~~~~~t~nP~wne~~~~~v~~~--~~~l~v~v~d~ 433 (768)
+.|.|+|++|+||+++ +..|.+||||++++ +...++|+++++|.||.|||.|.|.+.++ ...|.|+|||+
T Consensus 15 ~~L~V~V~~a~~L~~~---d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~ 91 (132)
T d1a25a_ 15 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW 91 (132)
T ss_dssp SEEEEEEEEEESCCCC---STTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred CEEEEEEEeeeCCCCC---CCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEec
Confidence 3599999999999985 67789999999998 45678999999999999999999999864 34899999999
Q ss_pred CCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeec
Q 004208 434 CHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVAL 471 (768)
Q Consensus 434 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 471 (768)
+.++ +|++||.+.|+|+++..+. ..+||+|.+.
T Consensus 92 d~~~----~d~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 124 (132)
T d1a25a_ 92 DLTS----RNDFMGSLSFGISELQKAG-VDGWFKLLSQ 124 (132)
T ss_dssp CSSS----CCEEEEEEEEEHHHHTTCC-EEEEEECBCH
T ss_pred CCCC----CCcEeEEEEEeHHHcCCCC-CCeEEECCCC
Confidence 9865 8999999999999997654 5799999764
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=1.7e-17 Score=148.96 Aligned_cols=107 Identities=23% Similarity=0.319 Sum_probs=89.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEeccCC
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIF---GNVVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKLGD 274 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~l---g~~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d~~ 274 (768)
+.|.|+|++|+||+.++..+.+||||++++ +.++++|+++++ +.||.|||+|.|.+... ....|.|+|||++..
T Consensus 18 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~ 96 (130)
T d1dqva1 18 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF 96 (130)
T ss_dssp CEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSS
T ss_pred CEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcC-CCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCCC
Confidence 469999999999999999999999999999 456789999987 99999999999987543 456799999999998
Q ss_pred CCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004208 275 NKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLERN 309 (768)
Q Consensus 275 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (768)
+++++||++.|++...... .......|++|.+.
T Consensus 97 ~~d~~iG~~~i~~~~~l~~--~~~~~~~W~~L~~~ 129 (130)
T d1dqva1 97 SRHDLIGQVVLDNLLELAE--QPPDRPLWRDILEG 129 (130)
T ss_dssp SCCCEEEEEECCCTTGGGS--SCSSCCCCEECBCC
T ss_pred CCCceEEEEEECchhhhhc--CCCCCcEEEecccC
Confidence 9999999999986543322 22335679999875
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2.8e-17 Score=147.80 Aligned_cols=119 Identities=14% Similarity=0.175 Sum_probs=94.5
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCCC
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPGG 440 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~~ 440 (768)
+.|+|+|++|++++.. +..+++||||++.+|++.++|++++++.||.|||.|.|.+.+ .+.|.|+|||++.++
T Consensus 6 ~~L~v~v~~A~~~~~~---~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~--- 78 (133)
T d2nq3a1 6 SQLQITVISAKLKENK---KNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLK--- 78 (133)
T ss_dssp EEEEEEEEEEEECCCC-----CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSS---
T ss_pred eEEEEEEEEeECCCcC---CCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCC---
Confidence 6799999999999874 566789999999999999999999999999999999999864 578999999999976
Q ss_pred CCCCceEEEEEecccccc---CceeeeeEe--eeecCCCCcccccEEEEEEEE
Q 004208 441 AKDSRIGKVRIRLSTLET---DRIYTHSYP--LVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 441 ~~d~~lG~~~i~l~~l~~---~~~~~~~~~--L~~~~~~g~~~~G~i~l~~~~ 488 (768)
+|++||++.|+|+++.. +.....+++ +.... ++.+..|+|.+.+..
T Consensus 79 -~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~-~~~~~~G~L~v~l~~ 129 (133)
T d2nq3a1 79 -SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDK-EPTETIGDLSICLDG 129 (133)
T ss_dssp -CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESS-CTTSEEEEEEEEEES
T ss_pred -CCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCC-CCceEEEEEEEEEee
Confidence 89999999999998743 332233444 43332 344556887766653
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=8.1e-18 Score=150.05 Aligned_cols=113 Identities=27% Similarity=0.469 Sum_probs=92.2
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeEeeeecCCCCCeeeeEEEEE-e--cc
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIG-----NYKGTTIPFEKKLNPEWNQVFAFT-K--ER 96 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~Wne~f~f~-~--~~ 96 (768)
...+++.|+-. .+.|.|+|++|+||+..+..+.+||||++.+. ..+++|++++++.||+|||+|.|. + .+
T Consensus 2 ~l~l~l~y~~~--~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~ 79 (125)
T d2bwqa1 2 QLSIKLWFDKV--GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE 79 (125)
T ss_dssp EEEEEEEEETT--TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGG
T ss_pred EEEEEEEEECC--CCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhh
Confidence 45678888854 57999999999999999989999999999983 256899999999999999999996 3 34
Q ss_pred CCCceEEEEEEEcCCC---CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcc
Q 004208 97 LQAISVELLVKDKMIV---NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLE 145 (768)
Q Consensus 97 ~~~~~L~i~V~d~~~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 145 (768)
+....|.|+|||++.. ++++||++.|+|.++.... ..+||+|+
T Consensus 80 l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~------~~~Wy~L~ 125 (125)
T d2bwqa1 80 FRERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQ 125 (125)
T ss_dssp GGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS------CEEEEECC
T ss_pred cCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCC------CCEEEeCc
Confidence 4567899999999976 5679999999999987653 35899985
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=3.1e-17 Score=145.39 Aligned_cols=117 Identities=20% Similarity=0.241 Sum_probs=94.3
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCeeeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCCCC
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYANKWVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLHPG 439 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~~~ 439 (768)
++.|.|+|++|++|.+. +++||||++++|+...+|.++++ .||.|||.|.|.+.++.+.|.|+|||++..
T Consensus 1 ~~~L~V~v~~a~~l~~~------~~~dpYv~l~~~~~k~~T~~~k~-~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~--- 70 (128)
T d2cjta1 1 MSLLCVGVKKAKFDGAQ------EKFNTYVTLKVQNVKSTTIAVRG-SQPSWEQDFMFEINRLDLGLTVEVWNKGLI--- 70 (128)
T ss_dssp CEEEEEEEEEEECSSCG------GGCEEEEEEEETTEEEECCCEES-SSCEEEEEEEEEECCCSSEEEEEEEECCSS---
T ss_pred CeEEEEEEEEEECCCCC------CCcCeEEEEEeCCEEEEEEEecC-CCCeEEEEEEEeeccccceEEEEEEeCCCc---
Confidence 35799999999999874 36899999999999999998864 599999999999999988999999999863
Q ss_pred CCCCCceEEEEEeccccccC--ceeeeeEeeeecC--CCC------cccccEEEEEEEE
Q 004208 440 GAKDSRIGKVRIRLSTLETD--RIYTHSYPLVALL--PNG------VKKMGEVQLAVRF 488 (768)
Q Consensus 440 ~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~--~~g------~~~~G~i~l~~~~ 488 (768)
+|++||++.|+|+++..+ .....||+|.... ..| ....++|.++.+|
T Consensus 71 --~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~ 127 (128)
T d2cjta1 71 --WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 127 (128)
T ss_dssp --CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred --CCcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence 588999999999998643 3456899996432 111 1234678888777
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=5.3e-17 Score=145.77 Aligned_cols=118 Identities=17% Similarity=0.320 Sum_probs=91.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe-----cCeeeeeccccCC-CCCccccEEEEEEeCCC-cEEEEEEEeCC
Q 004208 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKY-----ANKWVRTRTVVDS-FDPKWNEQYTWEVYDPY-TVITLVVFDNC 434 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-----g~~~~~T~~~~~t-~nP~wne~~~~~v~~~~-~~l~v~v~d~~ 434 (768)
.|+|+|++|+||+..+ .+.++++||||++++ +.+.+||++++++ +||.|||+|+|.+..+. ..|.|+|||++
T Consensus 5 ~l~V~Vi~a~~L~~~~-~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d 83 (131)
T d1qasa2 5 RLRVRIISGQQLPKVN-KNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD 83 (131)
T ss_dssp EEEEEEEEEESCCCCC------CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred EEEEEEEEeeCCCCCC-CCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence 6999999999997543 256788999999998 3467999998765 79999999999987654 58999999999
Q ss_pred CCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 435 HLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 435 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
.++ +|++||++.|+|+.+.+|. +|+||.+...... ..++|.+.+.+
T Consensus 84 ~~~----~d~~iG~~~i~l~~l~~g~---~~~~L~~~~g~~~-~~~~L~v~i~~ 129 (131)
T d1qasa2 84 SSS----KNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQH-PSATLFVKISI 129 (131)
T ss_dssp TTT----CCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEE-EEEEEEEEEEE
T ss_pred CCC----CCcEEEEEEEEEeccCCCC---EEEECCCCCcCCC-CCCEEEEEEEE
Confidence 865 8999999999999998764 6899976543221 34667666665
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=3.1e-17 Score=149.85 Aligned_cols=104 Identities=22% Similarity=0.345 Sum_probs=90.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEeccCC
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIF---GNVVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKLGD 274 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~l---g~~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d~~ 274 (768)
+.|+|+|++|+||+.++..+.+||||++++ +.+..+|+++++ +.||.|||+|.|.+... ....|.|+|||++..
T Consensus 34 ~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~-t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~ 112 (143)
T d1rsya_ 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF 112 (143)
T ss_dssp TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTT-CSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred CEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEecc-ccCcceeeeeEEEEEeeccCCceEEEEEEEcCCC
Confidence 369999999999999999999999999999 557789999887 99999999999987543 456899999999998
Q ss_pred CCCceeEEEEEeccccccccCCCCCCceeEEccc
Q 004208 275 NKEECLGRLVLPLSKAGKRFLPLPAAAIWYNLER 308 (768)
Q Consensus 275 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~ 308 (768)
+++++||++.|+|+++.. +....+||+|+.
T Consensus 113 ~~~~~iG~~~i~L~~~~~----~~~~~~W~~L~s 142 (143)
T d1rsya_ 113 SKHDIIGEFKVPMNTVDF----GHVTEEWRDLQS 142 (143)
T ss_dssp SCCEEEEEEEEEGGGCCC----SSCEEEEEECBC
T ss_pred CCCcEEEEEEEEchhccC----CCCCccEEeCCC
Confidence 899999999999999863 345678999975
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=1.9e-17 Score=151.36 Aligned_cols=104 Identities=26% Similarity=0.400 Sum_probs=89.4
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC--------------eeeeeccccCCCCCccccEEEEEEeC----C
Q 004208 361 GVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN--------------KWVRTRTVVDSFDPKWNEQYTWEVYD----P 422 (768)
Q Consensus 361 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~--------------~~~~T~~~~~t~nP~wne~~~~~v~~----~ 422 (768)
|.|.|.|++|+||++. +..|.+||||++++.+ +..||++++++.||.|||.|.|.+.. .
T Consensus 18 ~~L~V~V~~A~~L~~~---d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~ 94 (142)
T d1rh8a_ 18 GNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLM 94 (142)
T ss_dssp TEEEEEEEEEESCCCC---SSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHT
T ss_pred CEEEEEEEEeECCCCc---CCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccC
Confidence 4699999999999985 6788999999999832 23689999999999999999998543 3
Q ss_pred CcEEEEEEEeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeec
Q 004208 423 YTVITLVVFDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVAL 471 (768)
Q Consensus 423 ~~~l~v~v~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 471 (768)
...|.|+|||++.++ +|++||.+.|+|+++..+....+||+|...
T Consensus 95 ~~~L~i~V~d~d~~~----~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~ 139 (142)
T d1rh8a_ 95 KKTLEVTVWDYDRFS----SNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp TCEEEEEEEEECSSS----CEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred CCEEEEEEEEecCCC----CCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence 458999999999865 889999999999999888778899999754
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.5e-16 Score=144.24 Aligned_cols=105 Identities=23% Similarity=0.376 Sum_probs=89.8
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCCCCCCC-CCCcEEEEEEC---CeeeEeeeecCCCCCeeeeEEEEE-ec--c
Q 004208 24 GRERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTG-TCDPYVEVKIG---NYKGTTIPFEKKLNPEWNQVFAFT-KE--R 96 (768)
Q Consensus 24 ~~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g-~~dPyv~v~~~---~~~~~T~~~~~t~nP~Wne~f~f~-~~--~ 96 (768)
|..++++.|+.. .+.|.|+|++|+||+.++..+ .+||||++.+. .++.+|++++++.||.|||+|.|. +. +
T Consensus 9 G~l~~sl~Y~~~--~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 86 (138)
T d1ugka_ 9 GTLFFSLEYNFE--RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQ 86 (138)
T ss_dssp CEEEEEEEEEGG--GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTT
T ss_pred EEEEEEEEEeCC--CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHH
Confidence 357889999864 579999999999999887665 58999999993 467899999999999999999997 32 3
Q ss_pred CCCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCC
Q 004208 97 LQAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKR 130 (768)
Q Consensus 97 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~ 130 (768)
+....|.|+|||++.+ +|++||++.|+|.++...
T Consensus 87 l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~ 121 (138)
T d1ugka_ 87 IQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121 (138)
T ss_dssp GGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCT
T ss_pred cccceEEEEEEECCCCCCCcEEEEEEEEcccccCC
Confidence 4467899999999998 899999999999998654
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.3e-16 Score=144.56 Aligned_cols=114 Identities=17% Similarity=0.322 Sum_probs=96.0
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeEeeeecCCCCCeeeeEEEEEec--cCC
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN----YKGTTIPFEKKLNPEWNQVFAFTKE--RLQ 98 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~----~~~~T~~~~~t~nP~Wne~f~f~~~--~~~ 98 (768)
..++++.|+.. .+.|.|+|++|++|. ..|.+||||++.+.+ ..++|++++++.||+|||+|.|.+. ++.
T Consensus 14 ~l~~sl~y~~~--~~~L~V~v~~a~~L~---~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~ 88 (138)
T d1wfma_ 14 KLHYCLDYDCQ--KAELFVTRLEAVTSN---HDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELP 88 (138)
T ss_dssp EEEEEEEEETT--TTEEEEEEEEEECCC---CSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSST
T ss_pred EEEEEEEECCC--CCEEEEEEEEcCCCC---CCCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhcc
Confidence 45778888864 579999999999995 457899999999954 3578999999999999999999974 455
Q ss_pred CceEEEEEEEcCCC-CCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCC
Q 004208 99 AISVELLVKDKMIV-NGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKD 148 (768)
Q Consensus 99 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 148 (768)
...|.|+|||++.+ ++++||++.|+|.++.... ....|++|.+..
T Consensus 89 ~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~-----~~~~W~~L~~~~ 134 (138)
T d1wfma_ 89 TATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPL-----GAAQWGELKTSG 134 (138)
T ss_dssp TCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCT-----TCCEEEECCCCS
T ss_pred ceEEEEEEeeecccccceeeeEEEEEhHHccCCC-----CceEeEeCCCCC
Confidence 78899999999998 8999999999999996542 257899998754
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.8e-16 Score=141.15 Aligned_cols=104 Identities=23% Similarity=0.397 Sum_probs=81.3
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe-----cCeeeeeccccCCCCCccccEEEEEEeC----CCcEEEEEE
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKY-----ANKWVRTRTVVDSFDPKWNEQYTWEVYD----PYTVITLVV 430 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-----g~~~~~T~~~~~t~nP~wne~~~~~v~~----~~~~l~v~v 430 (768)
.+.|.|+|++|+||++. +..+.+||||++.+ +....||++++++.||.|||.|.|.... ....|.|+|
T Consensus 13 ~~~L~V~V~~a~~L~~~---~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v 89 (125)
T d2bwqa1 13 GHQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITL 89 (125)
T ss_dssp TTEEEEEEEEEESCCCC---TTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEE
T ss_pred CCEEEEEEEEeECCCCc---CCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEE
Confidence 35699999999999984 67789999999998 2345899999999999999999997432 234799999
Q ss_pred EeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeee
Q 004208 431 FDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLV 469 (768)
Q Consensus 431 ~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 469 (768)
||.+.++ .+++++||++.|+|+++..+.. .+||+|.
T Consensus 90 ~d~~~~~--~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~ 125 (125)
T d2bwqa1 90 WDQARVR--EEESEFLGEILIELETALLDDE-PHWYKLQ 125 (125)
T ss_dssp EEC---------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred EECCCCC--CCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence 9998754 3466799999999999886543 6899983
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=5.2e-16 Score=140.69 Aligned_cols=91 Identities=24% Similarity=0.312 Sum_probs=79.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEecc
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIF-----GNVVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKL 272 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~l-----g~~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d 272 (768)
+.|.|+|++|+||+..+..+.+||||++++ ...+.+|+++++ +.||.|||+|.|.+... ....|.|.|||++
T Consensus 15 ~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~ 93 (137)
T d2cm5a1 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK-TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD 93 (137)
T ss_dssp TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCS-CSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred CEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcC-CCCCccceEEEEEeEHHHccccEEEEEeeeCC
Confidence 469999999999999998899999999998 235678999887 99999999999998543 3557999999999
Q ss_pred CCCCCceeEEEEEeccccc
Q 004208 273 GDNKEECLGRLVLPLSKAG 291 (768)
Q Consensus 273 ~~~~d~~lG~~~i~l~~l~ 291 (768)
..+++++||++.+++.++.
T Consensus 94 ~~~~~~~iG~~~i~l~~~~ 112 (137)
T d2cm5a1 94 IGKSNDYIGGCQLGISAKG 112 (137)
T ss_dssp SSSCCEEEEEEEEETTCCH
T ss_pred CCCCCCEEEEEEeCccccC
Confidence 9899999999999998654
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=1.9e-16 Score=143.57 Aligned_cols=101 Identities=27% Similarity=0.365 Sum_probs=88.2
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec--cC
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE--RL 97 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~--~~ 97 (768)
...+++.|+- ..+.|.|+|++|+||+..+..+.+||||++++.+ .+++|++++++.||+|||+|.|.+. ++
T Consensus 3 ~l~l~l~Y~~--~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l 80 (137)
T d2cm5a1 3 KILVSLMYST--QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDL 80 (137)
T ss_dssp EEEEEEEEET--TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred EEEEEEEEEC--CCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHc
Confidence 4577888885 4579999999999999988899999999999832 5678999999999999999999975 44
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCC
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDI 127 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l 127 (768)
....|.|.|||++.. ++++||++.+++..+
T Consensus 81 ~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~ 111 (137)
T d2cm5a1 81 AKKSLDISVWDYDIGKSNDYIGGCQLGISAK 111 (137)
T ss_dssp GGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred cccEEEEEeeeCCCCCCCCEEEEEEeCcccc
Confidence 567899999999988 999999999999765
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=4.5e-16 Score=141.04 Aligned_cols=108 Identities=25% Similarity=0.264 Sum_probs=80.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---eEEeeecccCCCCCCcccceEEEEecCCC--CCcEEEEEEecc
Q 004208 200 WYLRVNVIEAQDLVPKQRNRNPEVFIKAIF--GN---VVLKTTVSAKKTVNPTWNEDLMFVAAEPF--DDPLILTVEDKL 272 (768)
Q Consensus 200 ~~L~V~v~~a~~L~~~d~~~~~dpyV~v~l--g~---~~~~T~~i~~~t~nP~wne~f~f~~~~~~--~~~L~i~V~d~d 272 (768)
+.|.|+|++|+||+.++..+.+||||++++ ++ .+.+|+++++ +.||.|||+|.|.+.... ...|.|+|||++
T Consensus 15 ~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~ 93 (138)
T d1w15a_ 15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC-TPNAVFNELFVFDIPCESLEEISVEFLVLDSE 93 (138)
T ss_dssp TEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCS-CSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred CEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECC-CCCCeECcEEEEEecHHHhCccEEEEEEEeCC
Confidence 369999999999999998899999999998 33 3557888887 999999999999875442 346999999999
Q ss_pred CCCCCceeEEEEEecccccccc--------CCCCCCceeEEccc
Q 004208 273 GDNKEECLGRLVLPLSKAGKRF--------LPLPAAAIWYNLER 308 (768)
Q Consensus 273 ~~~~d~~lG~~~i~l~~l~~~~--------~~~~~~~~w~~L~~ 308 (768)
..+++++||++.|++....... .++....+|+.|..
T Consensus 94 ~~~~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~Wh~L~~ 137 (138)
T d1w15a_ 94 RGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD 137 (138)
T ss_dssp TTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred CCCCCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeECeEccc
Confidence 9999999999999997643210 12344556776654
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=7.6e-16 Score=139.41 Aligned_cols=104 Identities=19% Similarity=0.164 Sum_probs=88.4
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCcCcEEEEEecC----eeeeeccccCCCCCccccEEEEEEeC---CCcEEEEEEEe
Q 004208 360 IGVLELGILSAKELLPMKSRDGRGTTDAYCVAKYAN----KWVRTRTVVDSFDPKWNEQYTWEVYD---PYTVITLVVFD 432 (768)
Q Consensus 360 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~----~~~~T~~~~~t~nP~wne~~~~~v~~---~~~~l~v~v~d 432 (768)
.+.|.|+|++|+||.. .|.+||||++++.+ ..++|++++++.||.|||.|.|.+.. ....|.|+|||
T Consensus 25 ~~~L~V~v~~a~~L~~------~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d 98 (138)
T d1wfma_ 25 KAELFVTRLEAVTSNH------DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRT 98 (138)
T ss_dssp TTEEEEEEEEEECCCC------SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEE
T ss_pred CCEEEEEEEEcCCCCC------CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEee
Confidence 3469999999999953 36789999999943 35889999999999999999999874 24589999999
Q ss_pred CCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecCC
Q 004208 433 NCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALLP 473 (768)
Q Consensus 433 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 473 (768)
++.++ ++++||++.|+|.++..++....||+|...++
T Consensus 99 ~~~~~----~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~~ 135 (138)
T d1wfma_ 99 CDRFS----RHSVAGELRLGLDGTSVPLGAAQWGELKTSGP 135 (138)
T ss_dssp CCSSC----TTSCSEEEEEESSSSSSCTTCCEEEECCCCSC
T ss_pred ecccc----cceeeeEEEEEhHHccCCCCceEeEeCCCCCC
Confidence 99865 89999999999999987777789999976543
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=2.7e-16 Score=142.59 Aligned_cols=101 Identities=28% Similarity=0.386 Sum_probs=81.2
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeEeeeecCCCCCeeeeEEEEEec--cC
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIG--N---YKGTTIPFEKKLNPEWNQVFAFTKE--RL 97 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~Wne~f~f~~~--~~ 97 (768)
...+++.|+-. .+.|.|+|++|+||+.++..+.+||||++++. + .+.+|++++++.||.|||+|.|.+. ++
T Consensus 3 ~l~~sl~Y~~~--~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~ 80 (138)
T d1w15a_ 3 ELLVSLCYQST--TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESL 80 (138)
T ss_dssp EEEEEEEEETT--TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSS
T ss_pred EEEEEEEEcCC--CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHh
Confidence 45677888853 57999999999999999989999999999983 2 3568999999999999999999974 44
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCC
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDI 127 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l 127 (768)
....|.|.|||++.+ ++++||++.|++...
T Consensus 81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 81 EEISVEFLVLDSERGSRNEVIGRLVLGATAE 111 (138)
T ss_dssp TTEEEEEEEEECCTTSCCEEEEEEEESTTCC
T ss_pred CccEEEEEEEeCCCCCCCCEEEEEEEcchhC
Confidence 456799999999998 899999999998764
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=2.4e-16 Score=146.14 Aligned_cols=120 Identities=25% Similarity=0.368 Sum_probs=96.4
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEecc--C
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKER--L 97 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~--~ 97 (768)
...+++.|+-. .+.|.|+|++|+||+..+..+.+||||++++.. .+++|++++++.||+|||+|.|.+.. +
T Consensus 13 ~l~~sl~Y~~~--~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l 90 (157)
T d1uowa_ 13 DICFSLRYVPT--AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQI 90 (157)
T ss_dssp EEEEEEEEETT--TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred EEEEEEEEcCC--CCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHc
Confidence 56788888864 579999999999999999899999999999853 34689999999999999999999753 3
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCCCC--------CCCCCCCCCeEEEcccC
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIPKR--------VPPDSPLAPEWKRLEAK 147 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~--------~~~~~~~~~~w~~L~~~ 147 (768)
....|.|+|||++.+ ++++||++.|++.....+ ..+ .....+|++|.++
T Consensus 91 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~-~~~v~~Wh~L~~~ 148 (157)
T d1uowa_ 91 QKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANP-RRPIAQWHTLQVE 148 (157)
T ss_dssp GGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHST-TCCEEEEEECBCH
T ss_pred CccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCC-CCceeEeEeCCCC
Confidence 467899999999999 899999999999764211 000 1224588888754
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.1e-15 Score=136.44 Aligned_cols=109 Identities=24% Similarity=0.352 Sum_probs=91.2
Q ss_pred CCccceEEEEEEEEcccCCccccccccccccccccccccccccceeecCCeeEEEEEEEEeecCCCCCCCCC-CCcEEEE
Q 004208 149 GSRARGELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRN-PEVFIKA 227 (768)
Q Consensus 149 ~~~~~G~i~l~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~d~~~~-~dpyV~v 227 (768)
++...|+|.+++.|.... ..|.|+|++|+||+.++..+. +||||++
T Consensus 4 ~~~~~G~l~~sl~Y~~~~---------------------------------~~L~V~V~~a~~L~~~d~~~~~~dpyV~v 50 (138)
T d1ugka_ 4 GSSGLGTLFFSLEYNFER---------------------------------KAFVVNIKEARGLPAMDEQSMTSDPYIKM 50 (138)
T ss_dssp CCCCCCEEEEEEEEEGGG---------------------------------TEEEEEEEEEESCCCCBTTTTBCEEEEEE
T ss_pred CCCCCEEEEEEEEEeCCC---------------------------------CEEEEEEEEecCCCCCCCCCCccceEEEE
Confidence 344679999999996422 359999999999998887664 7999999
Q ss_pred EE---CCeEEeeecccCCCCCCcccceEEEEecCC---CCCcEEEEEEeccCCCCCceeEEEEEeccccc
Q 004208 228 IF---GNVVLKTTVSAKKTVNPTWNEDLMFVAAEP---FDDPLILTVEDKLGDNKEECLGRLVLPLSKAG 291 (768)
Q Consensus 228 ~l---g~~~~~T~~i~~~t~nP~wne~f~f~~~~~---~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~ 291 (768)
.+ +.+.++|+++++ +.||.|||+|.|..... ....|.|+|||+|..+++++||++.++|+++.
T Consensus 51 ~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~ 119 (138)
T d1ugka_ 51 TILPEKKHKVKTRVLRK-TLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE 119 (138)
T ss_dssp EEETTTCSEEECCCCSS-CSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCC
T ss_pred EEcCCCCEeEeCeeEeC-CCCCceeeEEEEeeeCHHHcccceEEEEEEECCCCCCCcEEEEEEEEccccc
Confidence 99 567889999987 99999999999964322 24579999999999999999999999999975
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=2.2e-15 Score=139.62 Aligned_cols=124 Identities=22% Similarity=0.313 Sum_probs=100.6
Q ss_pred cceEEEEEEEEcccCCccccccccccccccccccccccccceeecCCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-
Q 004208 152 ARGELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFG- 230 (768)
Q Consensus 152 ~~G~i~l~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg- 230 (768)
..|+|.+++.|.+. .+.|.|+|++|+||+..+..+.+||||++++.
T Consensus 10 ~~G~l~~sl~Y~~~---------------------------------~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~ 56 (157)
T d1uowa_ 10 KLGDICFSLRYVPT---------------------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQ 56 (157)
T ss_dssp CCCEEEEEEEEETT---------------------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEE
T ss_pred eeeEEEEEEEEcCC---------------------------------CCEEEEEEEEEEEcccccCCCCCCeeEEEEEec
Confidence 57999999988632 24699999999999999999999999999982
Q ss_pred -C---eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEeccCCCCCceeEEEEEeccccccc--------cCC
Q 004208 231 -N---VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKLGDNKEECLGRLVLPLSKAGKR--------FLP 296 (768)
Q Consensus 231 -~---~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~--------~~~ 296 (768)
+ ...+|+++++ +.||+|||+|.|.+... ....|.|+|||++..+++++||++.|++...... ..+
T Consensus 57 ~~~~~~~~kT~v~~~-t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~ 135 (157)
T d1uowa_ 57 NGKRLKKKKTTIKKN-TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANP 135 (157)
T ss_dssp TTEEEEEEECCCCCS-CSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHST
T ss_pred CCccccceecccccC-CCCcccCCeEEEEecHHHcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCC
Confidence 2 3457888876 99999999999998654 3457999999999999999999999999764211 123
Q ss_pred CCCCceeEEcccC
Q 004208 297 LPAAAIWYNLERN 309 (768)
Q Consensus 297 ~~~~~~w~~L~~~ 309 (768)
+....+||+|+..
T Consensus 136 ~~~v~~Wh~L~~~ 148 (157)
T d1uowa_ 136 RRPIAQWHTLQVE 148 (157)
T ss_dssp TCCEEEEEECBCH
T ss_pred CCceeEeEeCCCC
Confidence 4556799999875
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=1.4e-16 Score=145.85 Aligned_cols=102 Identities=22% Similarity=0.366 Sum_probs=88.9
Q ss_pred CCcccccccccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeeeeEEEEEec--cC
Q 004208 25 RERLTSSFDLVEQMEFLYVRIVRARDLQVNQVTGTCDPYVEVKIGN-----YKGTTIPFEKKLNPEWNQVFAFTKE--RL 97 (768)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~--~~ 97 (768)
...+++.|+- ..+.|.|+|++|+||+..+..+.+||||++++.+ .+++|++++++.||+|||+|.|.+. ++
T Consensus 8 ~l~~sl~Y~~--~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~ 85 (145)
T d1dqva2 8 ELNFSLCYLP--TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESV 85 (145)
T ss_dssp EEEEEEEEET--TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGG
T ss_pred EEEEEEEEcC--CCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhc
Confidence 4678888884 4689999999999999988899999999999865 2578999999999999999999864 44
Q ss_pred CCceEEEEEEEcCCC-CCceeEEEEEcCCCCC
Q 004208 98 QAISVELLVKDKMIV-NGDFIGKIKIDMPDIP 128 (768)
Q Consensus 98 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~ 128 (768)
....|.|.|||++.. ++++||++.|++..+.
T Consensus 86 ~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~ 117 (145)
T d1dqva2 86 ENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD 117 (145)
T ss_dssp GSCCCCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred CCCEEEEEEEecCCCCCCcEEEEEEECchHcC
Confidence 567899999999998 8999999999998763
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=1.3e-15 Score=134.24 Aligned_cols=114 Identities=13% Similarity=0.283 Sum_probs=86.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeEeeeecCCCCCeeeeEEEEEeccCCCceEEEEEEEcCCCCC
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGNY-----KGTTIPFEKKLNPEWNQVFAFTKERLQAISVELLVKDKMIVNG 114 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~~-----~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~~~~~d 114 (768)
.|+|++....--..+..++.+||||+|++++. +.+|+++++|+||+|||+|.|.+.+ ...|.|.|||+| +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d---d 78 (123)
T d1bdya_ 4 FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA---E 78 (123)
T ss_dssp EEEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET---T
T ss_pred eEEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc---c
Confidence 35555554432233456889999999999762 4679999999999999999999986 468999999986 7
Q ss_pred ceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCccceEEEEEEEEcc
Q 004208 115 DFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSRARGELMFAIWFGT 164 (768)
Q Consensus 115 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~i~~~~ 164 (768)
+++|.+.+.+.++.............|++|+. .|+|++++.|..
T Consensus 79 ~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~------~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 79 DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP------QAKVLMCVQYFL 122 (123)
T ss_dssp EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS------SCEEEEEEEEEE
T ss_pred cccCccEEehhheeeccccCCCcccEEEeCCC------CEEEEEEEEEec
Confidence 89999999999885432222234578999963 499999998753
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=1.7e-15 Score=138.55 Aligned_cols=106 Identities=26% Similarity=0.294 Sum_probs=90.2
Q ss_pred cceEEEEEEEEcccCCccccccccccccccccccccccccceeecCCeeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC
Q 004208 152 ARGELMFAIWFGTQADEAFSSAWHSDTAVVSGENIMNCRSKVYVSPKLWYLRVNVIEAQDLVPKQRNRNPEVFIKAIFGN 231 (768)
Q Consensus 152 ~~G~i~l~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~d~~~~~dpyV~v~lg~ 231 (768)
..|+|.++++|.+ ..+.|.|+|++|+||+..+..+.+||||++++..
T Consensus 5 ~~G~l~~sl~Y~~---------------------------------~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~ 51 (145)
T d1dqva2 5 DLGELNFSLCYLP---------------------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLIS 51 (145)
T ss_dssp CCCEEEEEEEEET---------------------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCT
T ss_pred cceEEEEEEEEcC---------------------------------CCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEcc
Confidence 5699999998863 2346999999999999999889999999999943
Q ss_pred -----eEEeeecccCCCCCCcccceEEEEecCC--CCCcEEEEEEeccCCCCCceeEEEEEeccccc
Q 004208 232 -----VVLKTTVSAKKTVNPTWNEDLMFVAAEP--FDDPLILTVEDKLGDNKEECLGRLVLPLSKAG 291 (768)
Q Consensus 232 -----~~~~T~~i~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~ 291 (768)
.+.+|+++++ +.||.|||+|.|.+... ....|.|.|+|++..+++++||++.|++..+.
T Consensus 52 ~~~~~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~ 117 (145)
T d1dqva2 52 EGRRLKKRKTSIKKN-TLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD 117 (145)
T ss_dssp TCCTTSCEECCCCCS-CSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred CCccceeecCEEEeC-CCCceecceEEEEEehhhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcC
Confidence 2568898887 99999999999987543 45579999999999999999999999998753
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=7.3e-14 Score=122.82 Aligned_cols=104 Identities=14% Similarity=0.309 Sum_probs=83.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCCcCcEEEEEecCe-----eeeeccccCCCCCccccEEEEEEeCCCcEEEEEEEeCCCCC
Q 004208 363 LELGILSAKELLPMKSRDGRGTTDAYCVAKYANK-----WVRTRTVVDSFDPKWNEQYTWEVYDPYTVITLVVFDNCHLH 437 (768)
Q Consensus 363 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~-----~~~T~~~~~t~nP~wne~~~~~v~~~~~~l~v~v~d~~~~~ 437 (768)
+.|.++.+..+++ ..+.+||||++++++. ..+|+++++|+||.|||+|+|.|.+ .+.|.|.|||++
T Consensus 7 ~~~~~~~~~~~~~-----~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d--- 77 (123)
T d1bdya_ 7 ISFNSYELGSLQA-----EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA--- 77 (123)
T ss_dssp EEEEEEECCTTCC-----CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET---
T ss_pred EEEEEeecccCCC-----CCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc---
Confidence 5555565555543 5678999999999553 3678888999999999999999976 468999999964
Q ss_pred CCCCCCCceEEEEEecccccc-----CceeeeeEeeeecCCCCcccccEEEEEEEE
Q 004208 438 PGGAKDSRIGKVRIRLSTLET-----DRIYTHSYPLVALLPNGVKKMGEVQLAVRF 488 (768)
Q Consensus 438 ~~~~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 488 (768)
|+++|.+.|++.++.. +.....|++|. +.|+|++.++|
T Consensus 78 -----d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--------~~Gkl~l~v~~ 120 (123)
T d1bdya_ 78 -----EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--------PQAKVLMCVQY 120 (123)
T ss_dssp -----TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--------SSCEEEEEEEE
T ss_pred -----ccccCccEEehhheeeccccCCCcccEEEeCC--------CCEEEEEEEEE
Confidence 5799999999998853 55678999983 45999999998
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=6.9e-13 Score=116.19 Aligned_cols=108 Identities=18% Similarity=0.242 Sum_probs=82.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeEeee--ecCCCCCeeeeE-EEEE-eccCCCceEEEEEEEc
Q 004208 40 FLYVRIVRARDLQVNQVTGTCDPYVEVKIGN------YKGTTIP--FEKKLNPEWNQV-FAFT-KERLQAISVELLVKDK 109 (768)
Q Consensus 40 ~L~V~i~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~--~~~t~nP~Wne~-f~f~-~~~~~~~~L~i~V~d~ 109 (768)
.|.|+|++|++|+.+ ++||||+|++-| .+.+|++ ..++.||+|||+ |.|. +.......|.|.|||+
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~ 77 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE 77 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence 689999999999754 479999999832 3344444 477899999976 4443 4444456899999998
Q ss_pred CCCCCceeEEEEEcCCCCCCCCCCCCCCCCeEEEcccCCCCc-cceEEEEEEEE
Q 004208 110 MIVNGDFIGKIKIDMPDIPKRVPPDSPLAPEWKRLEAKDGSR-ARGELMFAIWF 162 (768)
Q Consensus 110 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~i~~ 162 (768)
+ |++||++.++|..+..+ .+|.+|.+..|+. ..+.|.+.+.+
T Consensus 78 d---~~~lG~~~ipl~~l~~G--------yR~vpL~~~~g~~l~~~~L~v~i~~ 120 (122)
T d2zkmx2 78 G---NKFLGHRIIPINALNSG--------YHHLCLHSESNMPLTMPALFIFLEM 120 (122)
T ss_dssp T---TEEEEEEEEEGGGBCCE--------EEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred C---CCEEEEEEEEcccCcCC--------ceEEEccCCCcCCCCCceEEEEEEE
Confidence 6 89999999999988764 6889999987764 45666666544
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.7e-11 Score=107.18 Aligned_cols=93 Identities=18% Similarity=0.384 Sum_probs=71.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCcCcEEEEEe-c-----Ceeeeeccc--cCCCCCccccE-EEE-EEeCCC-cEEEEEE
Q 004208 362 VLELGILSAKELLPMKSRDGRGTTDAYCVAKY-A-----NKWVRTRTV--VDSFDPKWNEQ-YTW-EVYDPY-TVITLVV 430 (768)
Q Consensus 362 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-g-----~~~~~T~~~--~~t~nP~wne~-~~~-~v~~~~-~~l~v~v 430 (768)
.|+|.|++|++|+.. +.||||+|++ | .+..+|+++ .++.||.|||. +.| .+..+. ..|.+.|
T Consensus 2 tl~V~Visaq~L~~~-------~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V 74 (122)
T d2zkmx2 2 TLSITVISGQFLSER-------SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV 74 (122)
T ss_dssp EEEEEEEEEESCCSS-------CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred EEEEEEEEeeCCCCC-------CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEE
Confidence 489999999999762 4899999998 2 234556554 56899999986 444 344444 4899999
Q ss_pred EeCCCCCCCCCCCCceEEEEEeccccccCceeeeeEeeeecC
Q 004208 431 FDNCHLHPGGAKDSRIGKVRIRLSTLETDRIYTHSYPLVALL 472 (768)
Q Consensus 431 ~d~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 472 (768)
||++ |++||++.|||+.+..|- ++.||.+..
T Consensus 75 ~D~d--------~~~lG~~~ipl~~l~~Gy---R~vpL~~~~ 105 (122)
T d2zkmx2 75 MEEG--------NKFLGHRIIPINALNSGY---HHLCLHSES 105 (122)
T ss_dssp EETT--------TEEEEEEEEEGGGBCCEE---EEEEEECTT
T ss_pred ECCC--------CCEEEEEEEEcccCcCCc---eEEEccCCC
Confidence 9964 679999999999998874 678997654
|