Citrus Sinensis ID: 004217

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------
Protein Sequence
MRRSIWADDANAPSGSSSQSRFPPQAASNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENVLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPVTRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVGVGSEL
Secondary Structure (PSIPRED)
cccEEEEccccccEEEEcccccccccccccccEEEEEccccccccEEccccccccEEEEcccccEEEEEEccEEEccccccEEEEEccccEEEccccccccccccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEccccccccEEEEEccccccEEEEccccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEcccccccccccccccccccEEEEEEccccccEEEEcccccEEccccccEEEcccccccccccEEEcccccEEEEEccccccccccccccEEEEEEccccEEEEcccccccccEEEEcccccccEEEEEEEcccccEEEEEccccccccccccccccEEEEEcccccccccEEEccccEEccccccccEEEccccccccEEEccEEEEEEEEEEcEEEcccccccccccEEccccccccEEccccccccEEcccccccccccccccccccEEEcccccccEEEEcccccccEEEEEEccccEEEEEEEccccccccEEEEEEcccccccccEEcccccEEEEEcccEEEccccEEEcccccEEEEEEEEEccccccccccccccccccEEEEEccccccEEEcccccEEEEEEccccccccEEEEccccccccEEEEEEccccccEEEEEEccccEEEEEEEccccccccccEEEEEEEEcccEEEEEcccccccEEEEEEEcccccccEEEEcccEEEEEEEcccccccccccccccccEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccEEEEcccccccccccccccccccccccccccEEEEEEcccccEEEEcccccEEEEEEccccEEEEEEccccccccccEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEccccEEEEEEcccccEEEEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEccccEEEEcccccEEEEccccccEEEEcccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEcccccEEEEcccccccEEEEccccccEEEcccccccccccccccccccccccccccccEcccccccccEEEcccccHHHcccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccccHHHcEEEEccEEEEHHcccccccccHEEHHHHHEHcccccccccccccccccccccccccccccccccEEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHccccccccHHEEEEEccccccHHHEEEEccccccEEEEEEEEEEEccHEHEEEccccccccEEEEEcccccccEEEccccccEEEEEEccccccccccccccccccEEEEccccc
Coil and Loop (DISEMBL)
mrrsiwaddanapsgsssqsrfppqaasnhrnsRLRNVFGLLaqrevaprtkhssKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAeslhhlrpkycplsppprstiaaafspdgktlasthgdhtvkiidcqtgsclkvlhghrrtpwvvrfhplnptiiasgslDHEVRLWnastaecigsrdfyrpiASIAFHASGELLAVASGHKLYIWRYnmreetssprivlrtrrslravhfhphaapllltaevndldssessltlatspgywrypppvicmagahssshpglaeevplitppflrpsfvrdderislqhtehdsgatrtqqslrssssvrlltystpsgqyelvlspiasnrsspmpdgtgtdsfVSEIdgalpqaaigavgtldglpeertnylpsfgdqtnwelpflqgwfvgqsqaaqcttgllngsdhenlaasgqienvlnssatpisvgqsrasgrsgsghqsthsqmmytpgsaegtafiniphsesarqpvTRFQAEVATSVAAAAATelpctvklriwphdiadpcallkgescrltiPHAVLcsemgahfspcGRYLVACVACvqpyletdpgfqsqgyqdatgagtsptrhpisaHQVIYELRIYSleeatfgtvlTSRAIRAAHCltsiqfsptsENLLLAYGRRHSSLLKSVLidgeitvptyTILEVYRVSDMELvrvlpsaedevnvacfhpsvggglvygtkegklRILQfdgsygmnhttscfmhenmqlvgvgsel
Flexible Loop (DISEMBL)
mrrsiwaddanapsgsssqsrfppqaasnhrnsRLRNVFGllaqrevaprtkhsskrllgetarkcsgsfsQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYnmreetssprivLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQhtehdsgatrtqqslrssssVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENVLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPVTRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSvlidgeitvpTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVGVGSEL
Low Complexity Region (SEG)
MRRSIWADDANAPSGSSSQSRFPPQAASNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGAtrtqqslrssssvrlltystPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENVLNSSATPIsvgqsrasgrsgsghqsTHSQMMYTPGSAEGTAFINIPHSESARQPVTRFQaevatsvaaaaateLPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVGVGSEL
Disordered region (IsUnstruct)
*************************************VFGLL****************************SQIFEAGRDARRGLASWVEAESLHHLRPKYC*********************ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVND*******LTLATSPGYWRYPPPVICMAGA***********VPLITPPFL**************************************************************************IDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLN************************************************************************RFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGF*******************ISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLV******
Disordered Region (DISOPRED)
*RRSIW*DDANAPSGSSSQSRFPPQAASNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENVLNSSATPISVGQSR************HSQMMYTPGSAEGTAFINIPHSESARQPVTRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQ**********SPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVG*****
Disordered Region (DISEMBL)
******************************RNSRLRNVFGLLAQREV************GETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN*********TLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT*******************RLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENVLNSSATP**********************MMYTPGSAEGTAFINIPHSESARQPVTRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQ**********RHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVGVGSEL
Disordered Region (DISPRO)
************************QAASNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGS*********QIENVLNSSATPI*V***************************************SARQPVTRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLE**********************HPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVGVGS*L
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRRSIWADDANAPSGSSSQSRFPPQAASNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENVLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPVTRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVGVGSEL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	767	2.2.26 [Sep-21-2011]
Q9C0C7	1298	Activating molecule in BE	no	no	0.200	0.118	0.425	1e-25
A2AH22	1300	Activating molecule in BE	no	no	0.200	0.118	0.425	1e-25
Q8YTC2	1258	Uncharacterized WD repeat	yes	no	0.172	0.104	0.382	7e-16
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.129	0.064	0.419	6e-13
Q00808	1356	Vegetative incompatibilit	no	no	0.140	0.079	0.351	8e-12
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.134	0.061	0.386	8e-11
P93107	606	Flagellar WD repeat-conta	N/A	no	0.132	0.168	0.380	1e-10
Q9USN3	777	Probable U3 small nucleol	yes	no	0.100	0.099	0.410	2e-10
Q5M786	334	WD repeat-containing prot	no	no	0.126	0.290	0.343	4e-10
Q498M4	334	WD repeat-containing prot	no	no	0.126	0.290	0.343	4e-10

>sp|Q9C0C7|AMRA1_HUMAN Activating molecule in BECN1-regulated autophagy protein 1 OS=Homo sapiens GN=AMBRA1 PE=1 SV=2

 Score =  118 bits (296), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 91/162 (56%), Gaps = 8/162 (4%)

Query: 99  KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFH 158
           K   L   PRST   AFSPD   LASTH +H + I + +TG C+  L GHRRTPW V FH
Sbjct: 45  KRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKTGKCVHSLIGHRRTPWCVTFH 104

Query: 159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWR 218
           P    +IASG LD EVR+W+          D    IAS+AFH + +LL +A+ ++++ W 
Sbjct: 105 PTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEIHFWD 164

Query: 219 YNMREETSSPRIVLRTRRSL---RAVHFHPHAAPLLLTAEVN 257
           ++ RE    P  V++T   +   R V F P     LLTA VN
Sbjct: 165 WSRRE----PFAVVKTASEMERVRLVRFDP-LGHYLLTAIVN 201

Regulates autophagy and development of the nervous system. Involved in autophagy in controlling protein turnover during neuronal development, and in regulating normal cell survival and proliferation.
Homo sapiens (taxid: 9606)

>sp|A2AH22|AMRA1_MOUSE Activating molecule in BECN1-regulated autophagy protein 1 OS=Mus musculus GN=Ambra1 PE=1 SV=1

 Score =  118 bits (296), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 91/162 (56%), Gaps = 8/162 (4%)

Query: 99  KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFH 158
           K   L   PRST   AFSPD   LASTH +H + I + +TG C+  L GHRRTPW V FH
Sbjct: 45  KRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKTGKCVHSLIGHRRTPWCVTFH 104

Query: 159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWR 218
           P    +IASG LD EVR+W+          D    IAS+AFH + +LL +A+ ++++ W 
Sbjct: 105 PTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEIHFWD 164

Query: 219 YNMREETSSPRIVLRTRRSL---RAVHFHPHAAPLLLTAEVN 257
           ++ RE    P  V++T   +   R V F P     LLTA VN
Sbjct: 165 WSRRE----PFAVVKTASEMERVRLVRFDP-LGHYLLTAIVN 201

Regulates autophagy and development of the nervous system. Involved in autophagy in controlling protein turnover during neuronal development, and in regulating normal cell survival and proliferation.

Mus musculus (taxid: 10090)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 86.7 bits (213), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 77/141 (54%), Gaps = 9/141 (6%)

Query: 89  EAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E   L  +R   C   L+       + AF PDG+TLAS  GD T+K+ D Q G+CL+ L 
Sbjct: 706 ENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLT 765

Query: 147 GHRRTPWV--VRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASG 203
           GH  T WV  V F P   T +AS + DH ++LW+ S  +C+ + +     + S+AF A G
Sbjct: 766 GH--TDWVRCVAFSPDGNT-LASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADG 822

Query: 204 ELLAVASGHK-LYIWRYNMRE 223
           + LA  SG + + IW Y+  E
Sbjct: 823 QTLASGSGDRTIKIWNYHTGE 843

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 77.0 bits (188), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 6/105 (5%)

Query: 112  AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV--VRFHPLNPTIIASGS 169
            A AFSPDG TLAS  GD TV++ D  +  CL +L GH  T WV  V F+P + + +ASGS
Sbjct: 1163 AVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGH--TSWVNSVVFNP-DGSTLASGS 1219

Query: 170  LDHEVRLWNASTAECIGSRDFYRP-IASIAFHASGELLAVASGHK 213
             D  VRLW  ++++C+ +   +   + S+ F+  G +LA  S  K
Sbjct: 1220 SDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDK 1264

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 73.2 bits (178), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 64/111 (57%), Gaps = 3/111 (2%)

Query: 109  STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG 168
            S ++ AFSPDG+ +AS  GD T+KI D  +G+C + L GH  + W V F P +   +ASG
Sbjct: 969  SVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSP-DGQRVASG 1027

Query: 169  SLDHEVRLWNASTAECIGSRDFYRP-IASIAFHASGELLAVAS-GHKLYIW 217
            S D  +++W+ ++  C  + + +   + S+ F   G+ +A  S  H + IW
Sbjct: 1028 SDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHTIKIW 1078

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 69.7 bits (169), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 60/106 (56%), Gaps = 3/106 (2%)

Query: 115  FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
            FSPDGK LAS   DH++K+ D  +G  L  L GH      VRF P   T IA+GS D  V
Sbjct: 1163 FSPDGKNLASASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQT-IAAGSEDKTV 1221

Query: 175  RLWNASTAECIGSRDFYRP-IASIAFHASGELLAVASGHK-LYIWR 218
            +LW+    + + + + ++  + S++F   G+ LA AS  K + +WR
Sbjct: 1222 KLWHRQDGKLLKTLNGHQDWVNSLSFSPDGKTLASASADKTIKLWR 1267

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P93107|PF20_CHLRE Flagellar WD repeat-containing protein Pf20 OS=Chlamydomonas reinhardtii GN=PF20 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
           F P G  LAS  GD  VKI D +   C+     H++  W VRFH L   ++ASGSLDH V
Sbjct: 376 FHPAGTCLASGGGDSAVKIWDFEKQRCVTTFTDHKQAIWSVRFHHLGE-VVASGSLDHTV 434

Query: 175 RLWNASTAEC-IGSRDFYRPIASIAFHASGELLAVASGHK-LYIW 217
           RLW+    +C +  R     +  +A+      LA AS  K + +W
Sbjct: 435 RLWDLPAGKCRMALRGHVDSVNDLAWQPFSSSLATASSDKTVSVW 479

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q9USN3|UTP13_SCHPO Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp13 PE=3 SV=3

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIAS 167
           R   A   S DG+ +AS   D T+K+ D  TG  + VL GHRR  W   F+P +   +AS
Sbjct: 466 RDVNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGVLRGHRRGVWACSFNPFSRQ-LAS 524

Query: 168 GSLDHEVRLWNASTAECI 185
           GS D  +R+WN  T +C+
Sbjct: 525 GSGDRTIRIWNVDTQQCV 542

Involved in nucleolar processing of pre-18S ribosomal RNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5M786|WDR5_XENTR WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)

Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
            A+S D   L S   D T+KI D  +G CLK L GH    +   F+P    +I SGS D 
Sbjct: 93  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 151

Query: 173 EVRLWNASTAECIGSRDFY-RPIASIAFHASGELLAVAS 210
            VR+W+  T +C+ +   +  P++++ F+  G L+  +S
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 190

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Xenopus tropicalis (taxid: 8364)

>sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)

Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
            A+S D   L S   D T+KI D  +G CLK L GH    +   F+P    +I SGS D 
Sbjct: 93  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 151

Query: 173 EVRLWNASTAECIGSRDFY-RPIASIAFHASGELLAVAS 210
            VR+W+  T +C+ +   +  P++++ F+  G L+  +S
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 190

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	767
296088263	773	unnamed protein product [Vitis vinifera]	0.984	0.976	0.710	0.0
359494728	802	PREDICTED: uncharacterized protein LOC10	0.937	0.896	0.727	0.0
449458880	775	PREDICTED: uncharacterized protein LOC10	0.954	0.944	0.669	0.0
255554314	690	nucleotide binding protein, putative [Ri	0.890	0.989	0.657	0.0
359480074	809	PREDICTED: uncharacterized protein LOC10	0.937	0.888	0.594	0.0
224132280	784	predicted protein [Populus trichocarpa]	0.936	0.915	0.586	0.0
297744244	756	unnamed protein product [Vitis vinifera]	0.859	0.871	0.617	0.0
224065515	703	predicted protein [Populus trichocarpa]	0.874	0.954	0.612	0.0
255585908	806	nucleotide binding protein, putative [Ri	0.924	0.879	0.583	0.0
356505084	809	PREDICTED: uncharacterized protein LOC10	0.936	0.887	0.561	0.0

>gi|296088263|emb|CBI35771.3| unnamed protein product [Vitis vinifera]

 Score = 1026 bits (2652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/766 (71%), Positives = 615/766 (80%), Gaps = 11/766 (1%)

Query: 1   MRRSIWADDANAPSGSSS--QSRFPPQAASNHRNSRLR--NVFGLLAQREVAPRTKHSSK 56
           MR S W DD +    S+S  Q+R P    S+H NSR    NV+ LLA+REVAPRTKHS K
Sbjct: 1   MRSSFWVDDGSVNVTSTSSSQTRIPQAVPSHHPNSRHSGSNVYRLLARREVAPRTKHSLK 60

Query: 57  RLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFS 116
           RL G+ ++    S     EA R+AR GL SWVEAESL HL  KYCPL PPPRSTIAAAFS
Sbjct: 61  RLWGDASKWHHNSIGPRCEAARNARCGLISWVEAESLRHLSAKYCPLLPPPRSTIAAAFS 120

Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
           PDGKTLASTHGDHTVKIIDCQ GSCLKVL GHRRTPWVVRFHPL P I+ASGSLDHEVRL
Sbjct: 121 PDGKTLASTHGDHTVKIIDCQNGSCLKVLSGHRRTPWVVRFHPLYPEILASGSLDHEVRL 180

Query: 177 WNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRR 236
           W+ASTAECIGSRDFYRPIASIAFHA GELLAVASGHKLYIW YN R ETSSP IVL+TRR
Sbjct: 181 WDASTAECIGSRDFYRPIASIAFHAQGELLAVASGHKLYIWHYNRRGETSSPTIVLKTRR 240

Query: 237 SLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLA 296
           SLRAVHFHPHAAP LLTAEVNDLDSS+SS+TLATSPGY RYPPP + +A AHSS    LA
Sbjct: 241 SLRAVHFHPHAAPFLLTAEVNDLDSSDSSMTLATSPGYLRYPPPTVYLADAHSSDRSSLA 300

Query: 297 EEVPLITPP-FLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYE 355
           +E+PL++ P F+ PSF RDD RISLQHT+  +G +  QQ +  S+SVRLLTYSTPSGQYE
Sbjct: 301 DELPLMSLPFFIWPSFARDDGRISLQHTDGVAGPSIAQQRVDHSTSVRLLTYSTPSGQYE 360

Query: 356 LVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQT 415
           L+LSP+  + SSPMP+ TGT+SF+ E++ ++PQ A+ A+ T +  PEER+N    FGD +
Sbjct: 361 LLLSPMEPSSSSPMPEETGTNSFLREMENSVPQPAMDAMDTTEVQPEERSNQFFPFGDPS 420

Query: 416 NWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIEN--VLNSSATPISVGQSRAS 473
            WELPFLQGW +GQSQA Q T   L+GS HEN ++ G+ E    + SS    S+ QSR +
Sbjct: 421 YWELPFLQGWLIGQSQAGQRTIRPLSGSGHENPSSFGETETPAPMVSSVMSTSISQSRVT 480

Query: 474 GRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQP-VTRFQAEVATSVAAAAATELP 532
           GRS S  +   S+     GSAEG AF+NI   ES  QP V+R Q+E+ATS+AAAAA ELP
Sbjct: 481 GRSSS--RHRSSRSRAATGSAEG-AFLNIGQDESGLQPVVSRIQSELATSLAAAAAAELP 537

Query: 533 CTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLE 592
           CTVKLRIWPHDI DPCA L  E CRLTIPHAVLCSEMGAHFSPCGR+L ACVAC+ P+LE
Sbjct: 538 CTVKLRIWPHDIKDPCASLDAERCRLTIPHAVLCSEMGAHFSPCGRFLAACVACMLPHLE 597

Query: 593 TDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLT 652
            DPG Q Q +   TGA TSPTRHPISAHQV+YELRIYSLEEATFG VL SRAIRAAHCLT
Sbjct: 598 ADPGSQGQMHHGVTGAATSPTRHPISAHQVMYELRIYSLEEATFGLVLASRAIRAAHCLT 657

Query: 653 SIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDE 712
           SIQFSPTSE+LLLAYGRRH+SLLKS++IDGE TVP YTILEVYRVSDMELVRVLPSAEDE
Sbjct: 658 SIQFSPTSEHLLLAYGRRHNSLLKSIVIDGETTVPIYTILEVYRVSDMELVRVLPSAEDE 717

Query: 713 VNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENM 758
           VNVACFHPSVGGGLVYGTKEGKLRILQ+D S+GMN+T+SCF+ ENM
Sbjct: 718 VNVACFHPSVGGGLVYGTKEGKLRILQYDSSHGMNYTSSCFLDENM 763

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494728|ref|XP_002282542.2| PREDICTED: uncharacterized protein LOC100263178 [Vitis vinifera]

 Score = 1009 bits (2610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/726 (72%), Positives = 595/726 (81%), Gaps = 7/726 (0%)

Query: 37  NVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHL 96
           NV+ LLA+REVAPRTKHS KRL G+ ++    S     EA R+AR GL SWVEAESL HL
Sbjct: 70  NVYRLLARREVAPRTKHSLKRLWGDASKWHHNSIGPRCEAARNARCGLISWVEAESLRHL 129

Query: 97  RPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR 156
             KYCPL PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ GSCLKVL GHRRTPWVVR
Sbjct: 130 SAKYCPLLPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQNGSCLKVLSGHRRTPWVVR 189

Query: 157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYI 216
           FHPL P I+ASGSLDHEVRLW+ASTAECIGSRDFYRPIASIAFHA GELLAVASGHKLYI
Sbjct: 190 FHPLYPEILASGSLDHEVRLWDASTAECIGSRDFYRPIASIAFHAQGELLAVASGHKLYI 249

Query: 217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWR 276
           W YN R ETSSP IVL+TRRSLRAVHFHPHAAP LLTAEVNDLDSS+SS+TLATSPGY R
Sbjct: 250 WHYNRRGETSSPTIVLKTRRSLRAVHFHPHAAPFLLTAEVNDLDSSDSSMTLATSPGYLR 309

Query: 277 YPPPVICMAGAHSSSHPGLAEEVPLITPP-FLRPSFVRDDERISLQHTEHDSGATRTQQS 335
           YPPP + +A AHSS    LA+E+PL++ P F+ PSF RDD RISLQHT+  +G +  QQ 
Sbjct: 310 YPPPTVYLADAHSSDRSSLADELPLMSLPFFIWPSFARDDGRISLQHTDGVAGPSIAQQR 369

Query: 336 LRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVG 395
           +  S+SVRLLTYSTPSGQYEL+LSP+  + SSPMP+ TGT+SF+ E++ ++PQ A+ A+ 
Sbjct: 370 VDHSTSVRLLTYSTPSGQYELLLSPMEPSSSSPMPEETGTNSFLREMENSVPQPAMDAMD 429

Query: 396 TLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIE 455
           T +  PEER+N    FGD + WELPFLQGW +GQSQA Q T   L+GS HEN ++ G+ E
Sbjct: 430 TTEVQPEERSNQFFPFGDPSYWELPFLQGWLIGQSQAGQRTIRPLSGSGHENPSSFGETE 489

Query: 456 N--VLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQP-V 512
               + SS    S+ QSR +GRS S  +   S+     GSAEG AF+NI   ES  QP V
Sbjct: 490 TPAPMVSSVMSTSISQSRVTGRSSS--RHRSSRSRAATGSAEG-AFLNIGQDESGLQPVV 546

Query: 513 TRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAH 572
           +R Q+E+ATS+AAAAA ELPCTVKLRIWPHDI DPCA L  E CRLTIPHAVLCSEMGAH
Sbjct: 547 SRIQSELATSLAAAAAAELPCTVKLRIWPHDIKDPCASLDAERCRLTIPHAVLCSEMGAH 606

Query: 573 FSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLE 632
           FSPCGR+L ACVAC+ P+LE DPG Q Q +   TGA TSPTRHPISAHQV+YELRIYSLE
Sbjct: 607 FSPCGRFLAACVACMLPHLEADPGSQGQMHHGVTGAATSPTRHPISAHQVMYELRIYSLE 666

Query: 633 EATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTIL 692
           EATFG VL SRAIRAAHCLTSIQFSPTSE+LLLAYGRRH+SLLKS++IDGE TVP YTIL
Sbjct: 667 EATFGLVLASRAIRAAHCLTSIQFSPTSEHLLLAYGRRHNSLLKSIVIDGETTVPIYTIL 726

Query: 693 EVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSC 752
           EVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQ+D S+GMN+T+SC
Sbjct: 727 EVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQYDSSHGMNYTSSC 786

Query: 753 FMHENM 758
           F+ ENM
Sbjct: 787 FLDENM 792

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458880|ref|XP_004147174.1| PREDICTED: uncharacterized protein LOC101210946 [Cucumis sativus] gi|449509118|ref|XP_004163498.1| PREDICTED: uncharacterized protein LOC101228862 [Cucumis sativus]

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/741 (66%), Positives = 571/741 (77%), Gaps = 9/741 (1%)

Query: 23  PPQAASNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARR 82
           PP     +R  R+ NVF LLAQREV+P+TK +S+R  G++  +   S     EA RDA+R
Sbjct: 29  PPLPYPTNRQ-RVSNVFQLLAQREVSPQTKRASRRFWGDSHDRQCDSVGPRCEAARDAKR 87

Query: 83  GLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL 142
           GL SWVEAESL HL  KYCPL PPPRSTIAAAFSPDG+TLASTHGDHTVKIIDCQTG+CL
Sbjct: 88  GLISWVEAESLRHLSAKYCPLLPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGTCL 147

Query: 143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHAS 202
           KVL GHRRTPWVVRFHPL P I+ASGSLD++VRLW+A+TAECIGSRDFYRPIASIAFHA 
Sbjct: 148 KVLSGHRRTPWVVRFHPLYPEILASGSLDYDVRLWDANTAECIGSRDFYRPIASIAFHAQ 207

Query: 203 GELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSS 262
           GELLAVASGHKLYIW YN R ET SP IVLRTRRSLRAVHFHPHAA  LLTAEVNDLD+S
Sbjct: 208 GELLAVASGHKLYIWHYNKRGETPSPTIVLRTRRSLRAVHFHPHAAQFLLTAEVNDLDTS 267

Query: 263 ESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISLQ 321
           ES++TLATSPGY +YPPP +  A AHSS    L + +PL++ P L  PSF +++ R+S+Q
Sbjct: 268 ESAITLATSPGYVQYPPPTVYFADAHSSDRSSLMDGLPLMSFPLLIWPSFSKENRRMSMQ 327

Query: 322 HTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSE 381
            TE D GA R Q+ +  S+SVRLLTYSTPSGQYELVLSPI  N SSP+P+ TGT+ + SE
Sbjct: 328 RTEGDPGAGRLQR-VDPSASVRLLTYSTPSGQYELVLSPIEPNSSSPVPEETGTNHYSSE 386

Query: 382 IDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLN 441
           ++  + + A  A   ++   E R N    F D   WELPFLQGW +GQSQA+Q      +
Sbjct: 387 METEVSETAGDASENMEVQTEVRNNQNFPFNDP--WELPFLQGWLIGQSQASQHALRPHS 444

Query: 442 GSDHENLAASGQIENVLN--SSATPISVGQSRASGRSGSGHQSTHSQM-MYTPGSAEGTA 498
               EN +A   I  +    +S  P S  QSR   RS S H+S  S++ +   GS EG +
Sbjct: 445 DDVRENSSAPSDIGGIHAPLTSLIPTSASQSRVGRRSSSRHRSMRSRVPVPVSGSDEGGS 504

Query: 499 FINIPHSESARQP-VTRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCR 557
             N    ES  QP V+R Q+E+A S+AA AA ELPCTVKLRIW HD+ +PCA L  E CR
Sbjct: 505 MSNTIPDESDPQPIVSRIQSELAASLAAVAAAELPCTVKLRIWSHDVKNPCAPLDDERCR 564

Query: 558 LTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPI 617
           L IPHAVLCSEMGAHFSPCGR+L ACVAC+ P++E DPGFQS    DATGA TSPTRHPI
Sbjct: 565 LIIPHAVLCSEMGAHFSPCGRFLAACVACMLPHMEADPGFQSHANSDATGAATSPTRHPI 624

Query: 618 SAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKS 677
           SA QV+YELRIYSLEEATFG VL SRAIRAAHCLTSIQFSPTSE+LLLAYGRRHSSLLKS
Sbjct: 625 SAQQVMYELRIYSLEEATFGVVLASRAIRAAHCLTSIQFSPTSEHLLLAYGRRHSSLLKS 684

Query: 678 VLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRI 737
           V++DGE TVP YTILEVYRVS+MELVRVLPSAEDEVNVACFHPSVGGG+VYGTKEGKLRI
Sbjct: 685 VVVDGETTVPIYTILEVYRVSNMELVRVLPSAEDEVNVACFHPSVGGGVVYGTKEGKLRI 744

Query: 738 LQFDGSYGMNHTTSCFMHENM 758
           LQ+D S  +NH+T  F+ ENM
Sbjct: 745 LQYDSSQAINHSTYGFLDENM 765

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554314|ref|XP_002518197.1| nucleotide binding protein, putative [Ricinus communis] gi|223542793|gb|EEF44330.1| nucleotide binding protein, putative [Ricinus communis]

 Score =  879 bits (2271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/695 (65%), Positives = 528/695 (75%), Gaps = 12/695 (1%)

Query: 1   MRRSIWADDANAPSGSSSQSRFPPQAASNHR-NSRLRNVFGLLAQREVAPRTKHSSKRLL 59
           MR S WADDAN PS S+S    PP ++  H  N +++NV+GLLAQREV PR KH+SK+L 
Sbjct: 1   MRGSFWADDANTPSTSNSN---PPISSRRHSGNYKIKNVYGLLAQREVCPRAKHASKKLW 57

Query: 60  GETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDG 119
            ++  +         ++ +DARRGL SWVEAESL HL  KYCPL PPPRSTIAAAFS DG
Sbjct: 58  KDSTDQRLDP-----QSAKDARRGLISWVEAESLQHLSAKYCPLLPPPRSTIAAAFSSDG 112

Query: 120 KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA 179
           KTLASTHGDHTVKIIDCQTG CLKVL GHRRTPWVVRFHPL P I+ASGSLDHEVRLWNA
Sbjct: 113 KTLASTHGDHTVKIIDCQTGKCLKVLSGHRRTPWVVRFHPLCPEILASGSLDHEVRLWNA 172

Query: 180 STAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLR 239
            T ECIGS +FYRPIASIAFHA GELLAVASGHKLYIW+YN R ETSSP  VLRTRRSLR
Sbjct: 173 KTTECIGSHEFYRPIASIAFHAHGELLAVASGHKLYIWQYNKRGETSSPPHVLRTRRSLR 232

Query: 240 AVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEV 299
           AVHFHPH APLLLTAEVNDLDSSESS+TLATSPGY  YPPP + +A  HS     L +E+
Sbjct: 233 AVHFHPHGAPLLLTAEVNDLDSSESSMTLATSPGYLCYPPPTVYLADTHSGGGLRLGDEL 292

Query: 300 PLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS 359
           PL++ PFL  SF R   RI +Q  + D G++R QQ L   +SVRLLTYSTPSGQYEL+LS
Sbjct: 293 PLMSLPFLI-SFARGG-RIPVQQIDRDVGSSRGQQRLDHPTSVRLLTYSTPSGQYELLLS 350

Query: 360 PIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWEL 419
           PI  N SSP+P+ T  DSF+ ++D   PQ  +    T +    ER N++  FGDQ +WE+
Sbjct: 351 PIEPNSSSPVPEETRPDSFMGDMDNETPQFVMDTAETAEVQSVERNNHISPFGDQLHWEV 410

Query: 420 PFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENVLNSSATPISVGQSRASGRSGSG 479
           PFL GW VGQSQA + T+   NG  +ENL A G+IEN ++S   P ++GQSR SGRSG  
Sbjct: 411 PFLHGWLVGQSQAGRRTSASPNGLANENLTAYGEIENRVSSPVIPPNIGQSRGSGRSGPR 470

Query: 480 HQSTHSQMMYTPGSAEGTAFINIPHSESARQPV-TRFQAEVATSVAAAAATELPCTVKLR 538
           ++S+  Q +   GS E TA   + H+E+   P  +R ++E+ATS+AAAAA ELPCTVKLR
Sbjct: 471 YRSSQPQTIPVTGSGESTASGYMVHNENDALPASSRIRSELATSLAAAAAAELPCTVKLR 530

Query: 539 IWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQ 598
           IWP++I DP   L  E CRLTIPHAVLCSEMGAHFSPCGR+L AC+ACV P+LE DPG Q
Sbjct: 531 IWPYNIKDPFTPLDTERCRLTIPHAVLCSEMGAHFSPCGRFLAACIACVLPHLEADPGLQ 590

Query: 599 SQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSP 658
            Q      GA TSPTRHPISAHQV+YELRIYSLEE TFG VL SRAIRAAHCLTSIQFSP
Sbjct: 591 GQVLHHNAGAATSPTRHPISAHQVMYELRIYSLEETTFGLVLASRAIRAAHCLTSIQFSP 650

Query: 659 TSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILE 693
           TSE+LLLAYGRRH SLL+SV+ID E TVP YTILE
Sbjct: 651 TSEHLLLAYGRRHGSLLRSVVIDREATVPIYTILE 685

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480074|ref|XP_002268829.2| PREDICTED: uncharacterized protein LOC100246400 [Vitis vinifera]

 Score =  860 bits (2222), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/784 (59%), Positives = 554/784 (70%), Gaps = 65/784 (8%)

Query: 36  RNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSF-SQIFEAGRDARRGLASWVEAESLH 94
           RNV  LLAQRE+ PR+K   KRL G ++ + + SF     EA RDARRGL SWVEA+SL 
Sbjct: 11  RNVLQLLAQREICPRSKQFPKRLWGGSSEQNAESFFGPKSEAARDARRGLISWVEADSLQ 70

Query: 95  HLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154
           HL  +YCPL PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC TGSCLKVL GHRRTPWV
Sbjct: 71  HLSARYCPLMPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCHTGSCLKVLTGHRRTPWV 130

Query: 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKL 214
           VRFHP++P I+ASGSLDHEVR+W+A+TAECIGSRDFYRPIASIAFHA GELLAVASGHKL
Sbjct: 131 VRFHPVHPEILASGSLDHEVRIWDANTAECIGSRDFYRPIASIAFHAKGELLAVASGHKL 190

Query: 215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGY 274
           ++W Y+ R ETSSP I+L+TRRSLRAVHFHPH AP+LLTAEVNDLDSS+SS+T ATSPGY
Sbjct: 191 FVWHYSRRGETSSPTIILKTRRSLRAVHFHPHGAPVLLTAEVNDLDSSDSSMTRATSPGY 250

Query: 275 WRYPPPVICMAGAHSSSHPGLAEEVPLITPPF-LRPSFVRDDERISLQHTEHDSGATRTQ 333
             YPPP + +A  HSS    LA E+ L + PF   PSF RDD RI L HT+  +G+TR Q
Sbjct: 251 LHYPPPAVFLANIHSSDRLKLASELHLASLPFSFIPSFARDDSRIDLYHTDRPTGSTRVQ 310

Query: 334 QSLRSSSSVRLLTYSTPSGQYELVL-----SPIASNRSSPMPDGTGTDSFVSEIDGALPQ 388
             + SS SV+    +  +GQY+ ++     SP+  + S+P  +GT  +   + ++  +P 
Sbjct: 311 --MGSSGSVQFQADANAAGQYDYMVFPMETSPVLPSCSNPSTEGTQINCVPNGMENGIPD 368

Query: 389 AAIGAVGTLDGLPEERT--------------------------------------NYLPS 410
             + A+ + +  P E+                                        +LP 
Sbjct: 369 PKMDAMDSTEMQPVEQNQHRSSANLDTFSGANSASRGVPGHISSLPESIEFGHLHQFLPC 428

Query: 411 FGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHE----NLA----------ASGQIEN 456
            G +  WELPFLQGW +GQSQA       LNG+ HE    NL           ++  IE 
Sbjct: 429 RGPKY-WELPFLQGWLMGQSQAGVSPMLSLNGASHEHSSQNLGMGSAILNPDLSTSNIEV 487

Query: 457 VLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPV-TRF 515
            + S A   S+     +GRSG   + + S ++    S E  A INI H  S   P+ +R 
Sbjct: 488 PVISPAMAGSINLPGVAGRSGQQQRFSRSHLISVSESVEQAASINIAHEGSDTPPIMSRI 547

Query: 516 QAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSP 575
           Q+E+A S+AAAAA ELPCTVKLRIW HD+ +P A+L  E C L IPHAVLCSEMGAH SP
Sbjct: 548 QSELAASLAAAAAAELPCTVKLRIWSHDLKNPSAVLNAEKCLLIIPHAVLCSEMGAHLSP 607

Query: 576 CGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEAT 635
           CGR+L ACVACV P+LE DPG Q+Q  QDA GA TSPTRHP+SAH V+YELRIYSLEEAT
Sbjct: 608 CGRFLAACVACVLPHLEADPGLQTQ-VQDAIGASTSPTRHPVSAHHVMYELRIYSLEEAT 666

Query: 636 FGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVY 695
           FGTVL SRAIRAAHCLTSIQFSPTSE++LLAYGRRHSSLLKS++IDGE T+P YTILEVY
Sbjct: 667 FGTVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHSSLLKSLVIDGETTLPIYTILEVY 726

Query: 696 RVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMN-HTTSCFM 754
           RVSDMELVRVLPSAEDEVNVACFHP  GGGLVYGTKEGKLR+LQ+D S+GMN +  + F+
Sbjct: 727 RVSDMELVRVLPSAEDEVNVACFHPLPGGGLVYGTKEGKLRVLQYDVSHGMNSNGPNSFL 786

Query: 755 HENM 758
            EN+
Sbjct: 787 GENL 790

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132280|ref|XP_002321300.1| predicted protein [Populus trichocarpa] gi|222862073|gb|EEE99615.1| predicted protein [Populus trichocarpa]

 Score =  838 bits (2166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/791 (58%), Positives = 546/791 (69%), Gaps = 73/791 (9%)

Query: 36  RNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFS-QIFEAGRDARRGLASWVEAESLH 94
           RN   LL QRE+ PRTKH+ KR  GE ++    S S    E  RDA+RGL SW EAESL 
Sbjct: 1   RNALCLLVQREICPRTKHTPKRRWGEASQWNYNSSSVPKTEPARDAKRGLISWAEAESLR 60

Query: 95  HLRPKYCPLSPPPRSTIAAAFSPDGKTLASTH------GDHTVKIIDCQTGSCLKVLHGH 148
           HL  +YCPL PPPRSTIAAAFSPDGKTLAST       GDHTVKIIDCQTG CLKVL GH
Sbjct: 61  HLSAQYCPLVPPPRSTIAAAFSPDGKTLASTQQVLLLCGDHTVKIIDCQTGICLKVLMGH 120

Query: 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAV 208
           RRTPWVVRFHPL+P I+ASGSLDHEVRLW+A+T+ECIGSRDFYRPIASIAFHA GELLAV
Sbjct: 121 RRTPWVVRFHPLHPEILASGSLDHEVRLWDANTSECIGSRDFYRPIASIAFHAEGELLAV 180

Query: 209 ASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTL 268
           ASGHKLYIW YN R E SSP IVL+TRRSLRAVHFHPH AP LLTAEVNDLDSS+SS+T 
Sbjct: 181 ASGHKLYIWHYNKRGEASSPTIVLKTRRSLRAVHFHPHGAPFLLTAEVNDLDSSDSSMTR 240

Query: 269 ATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISLQHTEHDS 327
           ATSPGY RYPPP + +    S     LA E+PL++ PFL  PSF  DD RI     + + 
Sbjct: 241 ATSPGYLRYPPPAVFVTNGQSGDCVSLASELPLVSLPFLFVPSFSLDDSRI-----DANR 295

Query: 328 GATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPM-----PDGTGTDSFVSEI 382
             T +   + SS+S++L   +  + +Y  ++SP+ +  + P       +G   +SF S +
Sbjct: 296 LVTSSTMQVESSTSMQLQMDTNATDRYVPLVSPMETFPAVPSSSYTSAEGIVNNSFPSGM 355

Query: 383 DGALPQAAIGAVGT--------------------------LDGLP------EERTNY--- 407
            G +      A+ T                          +DG+P      ++ T++   
Sbjct: 356 GGGVSNTREDAMETDEMPPVGGNPQGKSAHLEMLGVGNSAMDGVPANTSIRQQSTDFGQL 415

Query: 408 ---LPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLA------------ASG 452
              LPS  D T WELPFLQGW +GQSQA   +T  L+    E  A            ++ 
Sbjct: 416 QQILPS-RDSTWWELPFLQGWLMGQSQAGGPSTVPLSSGSRERSAQYIGPSSLTSYLSTQ 474

Query: 453 QIENVLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPV 512
            +E  + S A P S   S  SGRSGS  + + S+  + P S E  A IN+ H  S  QP+
Sbjct: 475 NVEAAVASLAMPGSTSISGVSGRSGSRPRISRSRF-FVPESRESMAPINMRHEGSDNQPI 533

Query: 513 -TRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGA 571
             R Q+E+ATS+ AAAA ELPCTVKLR+W HDI  PCA L  + CRLTIPHAVLCSEMGA
Sbjct: 534 FNRIQSEIATSLEAAAAAELPCTVKLRVWSHDIKHPCAPLNADKCRLTIPHAVLCSEMGA 593

Query: 572 HFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSL 631
           HFSPCGRYL ACVAC+ P++E DPG Q+  +QDA GA TSPTRHPISAHQV+YELRIYSL
Sbjct: 594 HFSPCGRYLAACVACMLPHMEADPGLQTLVHQDA-GAATSPTRHPISAHQVVYELRIYSL 652

Query: 632 EEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTI 691
           EEATFG+VL SRAIRAAHCLTSIQFSP SE++LLAYGRRH SLLKS++IDGE T P YT+
Sbjct: 653 EEATFGSVLVSRAIRAAHCLTSIQFSPMSEHILLAYGRRHGSLLKSIVIDGETTTPIYTV 712

Query: 692 LEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTT- 750
           LEVYRVSDMELVRVLPSAEDEVNVACFHP  GGGLVYGTKEGKLR+L++DG +G+N T  
Sbjct: 713 LEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLKYDGVHGVNCTRP 772

Query: 751 SCFMHENMQLV 761
           + F  EN+  V
Sbjct: 773 NHFPEENLTEV 783

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744244|emb|CBI37214.3| unnamed protein product [Vitis vinifera]

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/727 (61%), Positives = 520/727 (71%), Gaps = 68/727 (9%)

Query: 36  RNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSF-SQIFEAGRDARRGLASWVEAESLH 94
           RNV  LLAQRE+ PR+K   KRL G ++ + + SF     EA RDARRGL SWVEA+SL 
Sbjct: 29  RNVLQLLAQREICPRSKQFPKRLWGGSSEQNAESFFGPKSEAARDARRGLISWVEADSLQ 88

Query: 95  HLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154
           HL  +YCPL PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC TGSCLKVL GHRRTPWV
Sbjct: 89  HLSARYCPLMPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCHTGSCLKVLTGHRRTPWV 148

Query: 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKL 214
           VRFHP++P I+ASGSLDHEVR+W+A+TAECIGSRDFYRPIASIAFHA GELLAVASGHKL
Sbjct: 149 VRFHPVHPEILASGSLDHEVRIWDANTAECIGSRDFYRPIASIAFHAKGELLAVASGHKL 208

Query: 215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGY 274
           ++W Y+ R ETSSP I+L+TRRSLRAVHFHPH AP+LLTAEVNDLDSS+SS+T ATSPGY
Sbjct: 209 FVWHYSRRGETSSPTIILKTRRSLRAVHFHPHGAPVLLTAEVNDLDSSDSSMTRATSPGY 268

Query: 275 WRYPPPVICMAGAHSSSHPGLAEEVPLITPPF-LRPSFVRDDERISLQHTEHDSGATRTQ 333
             YPPP + +A  HSS    LA E+ L + PF   PSF RDD RI L HT+  +G+TR Q
Sbjct: 269 LHYPPPAVFLANIHSSDRLKLASELHLASLPFSFIPSFARDDSRIDLYHTDRPTGSTRVQ 328

Query: 334 QSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGA 393
                                   +    S+RSS        D+F      + P+     
Sbjct: 329 ------------------------MGSSGSHRSS-----ANLDTFSGANSASRPKY---- 355

Query: 394 VGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQ 453
                                  WELPFLQGW +GQSQA       LNG+ HE+ +    
Sbjct: 356 -----------------------WELPFLQGWLMGQSQAGVSPMLSLNGASHEHSS---- 388

Query: 454 IENVLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPV- 512
            +N+    A   S+     +GRSG   + + S ++    S E  A INI H  S   P+ 
Sbjct: 389 -QNL--GMAMAGSINLPGVAGRSGQQQRFSRSHLISVSESVEQAASINIAHEGSDTPPIM 445

Query: 513 TRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAH 572
           +R Q+E+A S+AAAAA ELPCTVKLRIW HD+ +P A+L  E C L IPHAVLCSEMGAH
Sbjct: 446 SRIQSELAASLAAAAAAELPCTVKLRIWSHDLKNPSAVLNAEKCLLIIPHAVLCSEMGAH 505

Query: 573 FSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLE 632
            SPCGR+L ACVACV P+LE DPG Q+Q  QDA GA TSPTRHP+SAH V+YELRIYSLE
Sbjct: 506 LSPCGRFLAACVACVLPHLEADPGLQTQ-VQDAIGASTSPTRHPVSAHHVMYELRIYSLE 564

Query: 633 EATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTIL 692
           EATFGTVL SRAIRAAHCLTSIQFSPTSE++LLAYGRRHSSLLKS++IDGE T+P YTIL
Sbjct: 565 EATFGTVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHSSLLKSLVIDGETTLPIYTIL 624

Query: 693 EVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMN-HTTS 751
           EVYRVSDMELVRVLPSAEDEVNVACFHP  GGGLVYGTKEGKLR+LQ+D S+GMN +  +
Sbjct: 625 EVYRVSDMELVRVLPSAEDEVNVACFHPLPGGGLVYGTKEGKLRVLQYDVSHGMNSNGPN 684

Query: 752 CFMHENM 758
            F+ EN+
Sbjct: 685 SFLGENL 691

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065515|ref|XP_002301835.1| predicted protein [Populus trichocarpa] gi|222843561|gb|EEE81108.1| predicted protein [Populus trichocarpa]

 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/736 (61%), Positives = 519/736 (70%), Gaps = 65/736 (8%)

Query: 36  RNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQ-IFEAGRDARRGLASWVEAESLH 94
           RN F LL QRE+ PRTKH+ KR  GE A   S S S    E  RDA+RGL SWVEAESL 
Sbjct: 2   RNAFCLLVQREICPRTKHTPKRRWGEDAHWNSNSSSSPKTEQARDAKRGLISWVEAESLR 61

Query: 95  HLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154
           HL  KYCPL PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG+CLKVL GHRRTPWV
Sbjct: 62  HLSAKYCPLVPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGNCLKVLMGHRRTPWV 121

Query: 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKL 214
           VRFHPL+P I+ASGSLD+EVRLW+A+T+ECIGSRDFYRPIASIAFHA GELLAVASGHKL
Sbjct: 122 VRFHPLHPEILASGSLDYEVRLWDANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKL 181

Query: 215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGY 274
           YIW YN R E SSP IVLRTRRSLRAVHFHPH AP LLTAEVNDLDSS+SS+T ATSPGY
Sbjct: 182 YIWHYNKRGEASSPTIVLRTRRSLRAVHFHPHGAPFLLTAEVNDLDSSDSSMTRATSPGY 241

Query: 275 WRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLR-------PSFVRDDERISLQHTEHDS 327
            RYPPP + +A   S+    LA E+PL++            PS + +    S+ ++  D+
Sbjct: 242 PRYPPPAVFVANGQSNDRVSLASELPLVSYTSAEGIVSNAFPSGMGN----SVSNSREDA 297

Query: 328 GATRTQQSLRSS---SSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDG 384
             T   QS+  +   +SV L T+                        G G     S  DG
Sbjct: 298 METDEMQSVGGNPQGNSVNLETF------------------------GVGN----SATDG 329

Query: 385 ALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELP-FLQGWFVGQSQAAQCTTGLLNGS 443
                ++    T  G   +   +LPS  D T WELP FLQGW +GQSQA   +T   N  
Sbjct: 330 VPAHTSVRQQSTDFG---QLQQFLPS-RDSTRWELPPFLQGWLMGQSQAGVPSTLPHNSG 385

Query: 444 DHE------------NLAASGQIENVLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTP 491
            HE            +  ++  +E  + S A P S   S  SGRSGS H+ + S+    P
Sbjct: 386 GHELSAQYFGPSSLASYLSTQNVEAAVASLAMPGSTSLSGVSGRSGSRHRVSRSRFS-VP 444

Query: 492 GSAEGTAFINIPHSESARQPV-TRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCAL 550
            S E  A IN+ H  +  QP+  R Q+E+ATS+AAAA  ELPCTVKLR+W HDI  PCA 
Sbjct: 445 ESGESVAPINMQHEGTDNQPLFNRIQSEIATSLAAAA--ELPCTVKLRVWSHDIEHPCAP 502

Query: 551 LKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGT 610
           L  + C LTIPHAVLCSEMGAHFSPCGRYL ACVAC+ P++E DPG Q+  +QD TG  T
Sbjct: 503 LNSDKCCLTIPHAVLCSEMGAHFSPCGRYLAACVACMLPHMEADPGLQTLVHQD-TGTAT 561

Query: 611 SPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRR 670
           SPTRHPISAHQV+YELRIYSLEEATFG+VL SRAIRAAHCLTSIQFSPTSE++LLAYGRR
Sbjct: 562 SPTRHPISAHQVMYELRIYSLEEATFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRR 621

Query: 671 HSSLLKSVLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGT 730
           H SLLKS++IDGE   P YT+LEVYRVSDMELVRVLPSAEDEVNVACFHP  GGGLVYGT
Sbjct: 622 HVSLLKSIVIDGETKSPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGT 681

Query: 731 KEGKLRILQFDGSYGM 746
           KEGKLR+L++DG++G+
Sbjct: 682 KEGKLRVLKYDGAHGV 697

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585908|ref|XP_002533627.1| nucleotide binding protein, putative [Ricinus communis] gi|223526485|gb|EEF28756.1| nucleotide binding protein, putative [Ricinus communis]

 Score =  816 bits (2109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/786 (58%), Positives = 535/786 (68%), Gaps = 77/786 (9%)

Query: 37  NVFGLLAQREVAPRTKHSSKRLLGETAR-KCSG--------SFSQIFEAGRDARRGLASW 87
           N   LL +RE+ P+TKH  KR  G+ +R K +G        S +   E  RDA+RGL SW
Sbjct: 27  NALCLLVRREICPKTKHVPKRRWGDASRWKSNGGDNNNAISSSAPKCEPARDAKRGLISW 86

Query: 88  VEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147
           VE ESL HL  KYCPL PPPRSTIAAAFSPDG+TLASTHGDHTVKIIDCQTG+CLKVL G
Sbjct: 87  VEEESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG 146

Query: 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLA 207
           HRRTPWVVRFHPL+P I+ASGSLD+EVRLW+A+T+ECIGSRDFYRPIASIAFHA GELLA
Sbjct: 147 HRRTPWVVRFHPLHPEILASGSLDYEVRLWDANTSECIGSRDFYRPIASIAFHAEGELLA 206

Query: 208 VASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLT 267
           VASGHKLY+W YN R E SSP IVL+TRRSLRAVHFHPHAAP LLTAEVNDLDSS+SS+T
Sbjct: 207 VASGHKLYVWHYNKRGEASSPAIVLKTRRSLRAVHFHPHAAPFLLTAEVNDLDSSDSSMT 266

Query: 268 LATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISLQHTEHD 326
            ATSPGY RYPPP + +A   SS    LA EVPL++ PFL  PSF  +D R      + +
Sbjct: 267 RATSPGYLRYPPPAVFVANVQSSDRVSLAAEVPLMSLPFLFMPSFSVNDTR-----PDAN 321

Query: 327 SGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIAS--------------NRSSPMPDG 372
             A+ +     SS S RL        +Y+ +LSP+ +              + +S +P G
Sbjct: 322 RHASSSIMHGGSSGSRRLQAEVNAGEKYDRLLSPMETFPAVASSSHPGTEGSLNSLLPTG 381

Query: 373 TGT--DSFVS--EIDGALPQAAI---------------GAVGTLDGLPEERTNYLPSFG- 412
           + +  D+ V   E D   P   I                A+G + G    R   +  FG 
Sbjct: 382 SASVSDTIVDAMETDEMQPIRGILQGNYRDPETSRGGNSAMGGMSGNMSVRPRSI-EFGQ 440

Query: 413 --------DQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLA-----------ASGQ 453
                   D T WEL FLQGW +GQSQA   +T  LN   HE  A           +S  
Sbjct: 441 LHQLLPSRDPTWWELHFLQGWLMGQSQAGVPSTLPLNVGSHEYPAQYTASSSTSYLSSHN 500

Query: 454 IENVLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPV- 512
           +E  + + A P S   S  SGR    H  +   +     S E    I   H  +  QP+ 
Sbjct: 501 MEAAMATLAMPASTSLSGVSGRFDLQHNVSRFHI-----SGESMPPIIRQHDSTDTQPLF 555

Query: 513 TRFQAEVATSVAAAAAT-ELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGA 571
            R Q+E+ATS+AAAAA  ELPCTVKLR+WPHDI  PCA L  E CRLTIPHAVLCSEMGA
Sbjct: 556 NRIQSEIATSLAAAAAAAELPCTVKLRVWPHDIKHPCAPLNAEKCRLTIPHAVLCSEMGA 615

Query: 572 HFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSL 631
           HFSPCGR+L ACVAC+ P +E DPG Q+   QD +GA TSPTRHPISAHQV+YELRIYSL
Sbjct: 616 HFSPCGRFLAACVACMLPNMEADPGLQTLVQQD-SGAATSPTRHPISAHQVMYELRIYSL 674

Query: 632 EEATFGTVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTI 691
           EEATFG+VL SRAIRAAHCLTSIQFSPTSE++LLAYGRRH SLLKS++IDGE T P YT+
Sbjct: 675 EEATFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIIIDGETTSPVYTV 734

Query: 692 LEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTS 751
           LEVYRVSDMELVRVLPSAEDEVNVACFHP  GGGLVYGTKEGKLR+L++DG++G N TT 
Sbjct: 735 LEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLKYDGAHGGNCTTP 794

Query: 752 CFMHEN 757
            +  E+
Sbjct: 795 NYCPED 800

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505084|ref|XP_003521322.1| PREDICTED: uncharacterized protein LOC100794246 [Glycine max]

 Score =  816 bits (2109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/786 (56%), Positives = 540/786 (68%), Gaps = 68/786 (8%)

Query: 38  VFGLLAQREVAPRTKHSSKRLLGE---TARKCSGSFSQ-IFEAGRDARRGLASWVEAESL 93
           VF LLA+RE++PR+++ +KR  GE    ++  S  +S    E  RDARRGL SWVEAESL
Sbjct: 30  VFNLLARREISPRSRYVAKRHWGEPGEASKSKSSPYSHPKNEVVRDARRGLLSWVEAESL 89

Query: 94  HHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153
            HL  KYCPL PPPRSTIAAAFSPDGK LASTHGDHTVKIIDC+TGSCLKVL GHRRTPW
Sbjct: 90  RHLSAKYCPLLPPPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGSCLKVLVGHRRTPW 149

Query: 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK 213
           VVRFHPL+P I+ASGSLD EVRLW+A+T+ECI S  FYRPIASIAFHA GE++AVASGHK
Sbjct: 150 VVRFHPLHPHILASGSLDQEVRLWDANTSECIISHHFYRPIASIAFHAKGEIIAVASGHK 209

Query: 214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPG 273
           LYIW +N + E SSP  VL+T+RSLRAVHFHPHAAP LLTAEVNDL+SS+SS+T ATS G
Sbjct: 210 LYIWFHNKKGEASSPIFVLKTKRSLRAVHFHPHAAPYLLTAEVNDLESSDSSMTEATSLG 269

Query: 274 YWRYPPPVICMAGAHSSSHPGLAEEVPLITPPF-LRPSFVRDDERISLQHTEHDSGATRT 332
           Y +YPPP + +   H + H  L+ E+P ++ PF + P++  D+ R  LQH  HD G+   
Sbjct: 270 YLQYPPPAVFVTNIHPTEHISLSSELPYVSLPFYVMPAYTVDESRAELQHASHDVGSGSM 329

Query: 333 QQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTD-----SFVSEIDGALP 387
           Q  + S++ V+L    + +  YE  +SP+ +    P    TG +     +F + +   L 
Sbjct: 330 Q--IESAAMVQLHADPSAAAHYETTVSPMDTFSEMPSSSQTGAEYPAHTAFSNGMGIGLS 387

Query: 388 QAAIGAV-----------------------GTLDGLPEERTN--YLPSFG---------D 413
              +  +                       G L GL  +  N   L  FG         D
Sbjct: 388 NLTMDGMETDETRPAEGSQHGNLTNTYSLNGMLHGLSRQTANRGVLSEFGQFHQFFPSRD 447

Query: 414 QTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLA-------------ASGQIENVLNS 460
            + WE+PFL GW +GQSQ    +     G+  +NL+             ++  ++  + S
Sbjct: 448 PSGWEIPFLHGWIMGQSQVGVPSMLPHMGASRDNLSQHIGSSSIKASNPSTSNVDAAMPS 507

Query: 461 SATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGT--AFINIPHSESARQP-VTRFQA 517
           SA P S+    +S RSG  +  + S++   P S  G   A IN PH     Q  V+R Q+
Sbjct: 508 SAIPGSISIPGSSMRSGLRNHFSQSRV---PVSESGNLAASINAPHDGFDIQTIVSRIQS 564

Query: 518 EVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCG 577
           E+ATSVAA AA ELPCTVKLR+W HDI +PCA L  + CRLTIPHAVLCSEMGAHFSPCG
Sbjct: 565 ELATSVAATAA-ELPCTVKLRVWSHDIKNPCAPLNADRCRLTIPHAVLCSEMGAHFSPCG 623

Query: 578 RYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEATFG 637
           R+L ACVACV P++E DPG Q+  +QD  G  TSPTRHPISAHQV+YELRIYSLEEATFG
Sbjct: 624 RFLAACVACVLPHIEADPGLQTPVHQDP-GVATSPTRHPISAHQVMYELRIYSLEEATFG 682

Query: 638 TVLTSRAIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVYRV 697
           +VL SRAIRAAHCLTSIQFSPTSE++LLAYGRRH SLLKS++IDGE T+P YT+LEVY+V
Sbjct: 683 SVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYKV 742

Query: 698 SDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHEN 757
           SDMELVRVLPSAEDEVNVACFHP  GGGLVYGTKEGKLR+LQ+DG++ +N T   +  E 
Sbjct: 743 SDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLQYDGAHAVNGTGPSYFPEE 802

Query: 758 MQLVGV 763
             +VGV
Sbjct: 803 -TIVGV 807

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	767
TAIR|locus:2020285	793	AT1G04140 "AT1G04140" [Arabido	0.525	0.508	0.523	1.7e-200
UNIPROTKB|E1BQ96	1301	AMBRA1 "Uncharacterized protei	0.213	0.126	0.409	7.4e-25
UNIPROTKB|Q9C0C7	1298	AMBRA1 "Activating molecule in	0.259	0.153	0.370	7.7e-24
MGI|MGI:2443564	1300	Ambra1 "autophagy/beclin 1 reg	0.259	0.153	0.370	7.7e-24
UNIPROTKB|F1MPW0	1297	F1MPW0 "Uncharacterized protei	0.204	0.121	0.421	8e-24
UNIPROTKB|F1SI99	1297	F1SI99 "Uncharacterized protei	0.204	0.121	0.421	9.9e-24
DICTYBASE|DDB_G0287273	335	wdr5 "WD40 repeat-containing p	0.134	0.307	0.339	8.6e-10
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.134	0.334	0.349	1e-09
UNIPROTKB|Q2KIG2	334	WDR5 "WD repeat-containing pro	0.134	0.308	0.349	1.4e-09
UNIPROTKB|P61964	334	WDR5 "WD repeat-containing pro	0.134	0.308	0.349	1.4e-09

TAIR|locus:2020285 AT1G04140 "AT1G04140" [Arabidopsis thaliana (taxid:3702)]

 Score = 1014 (362.0 bits), Expect = 1.7e-200, Sum P(2) = 1.7e-200
 Identities = 215/411 (52%), Positives = 257/411 (62%)

Query:     1 MRRSIWADDANAPSGSSSQSRFPPQAASNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLG 60
             M  SIW +D ++P  S   S  P   A+ HR  R R+VF LL QRE++P TK   ++  G
Sbjct:     1 MTESIWLNDQSSPR-SMIPSAKP--VANVHRQ-RCRSVFKLLVQREISPNTKFVPRKRWG 56

Query:    61 ETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGK 120
             E+      S     E  R+    L SWVEAESL HL  KYCPL PPPRSTIAAAFS DG+
Sbjct:    57 ESRCDADSSCGTTSEPVREQGLNLISWVEAESLQHLSAKYCPLVPPPRSTIAAAFSSDGR 116

Query:   121 TLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180
             TLASTHGDHTVKIIDC+TG CLK+L GHRRTPWVVRFHP +  I+ASGSLDHEVRLWNA 
Sbjct:   117 TLASTHGDHTVKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEVRLWNAK 176

Query:   181 TAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRA 240
             T ECI + DFYRPIASIAFHA GELLAVASGHKL+IW YN   + S+P IVL+TRRSLRA
Sbjct:   177 TGECIRTHDFYRPIASIAFHAGGELLAVASGHKLHIWHYNKGGDDSAPAIVLKTRRSLRA 236

Query:   241 VHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVP 300
             VHFHPH  PLLLTAEV D+DSS+S++T +TSPGY RYPPP I      S S   LA E+P
Sbjct:   237 VHFHPHGVPLLLTAEVTDIDSSDSAMTRSTSPGYLRYPPPAIFFTNTQSGSRTSLAAELP 296

Query:   301 LITPPFLR-PSFVRDDERISLQHTEHDSGAXXXXXXXXXXXXXXXXXXXXPSGQYELVLS 359
             L+  P+L  PS+  DD RI                               PS    +  S
Sbjct:   297 LVPLPYLLLPSYSADDPRILYSSGTTGPRNAQTRFQSNQSSVEHGSRTISPS-PLPMATS 355

Query:   360 PIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPS 410
                S  S  +PD + +++F ++        A+ A+   +  P  R N +PS
Sbjct:   356 ADLSG-SYHVPDNSASNTFATQAGARNSTTAVDAMDVDEAQPVGR-NRVPS 404

GO:0000166 "nucleotide binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

UNIPROTKB|E1BQ96 AMBRA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 310 (114.2 bits), Expect = 7.4e-25, Sum P(3) = 7.4e-25
 Identities = 68/166 (40%), Positives = 93/166 (56%)

Query:    99 KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFH 158
             K   L   PRST   AFSPD   +ASTH +H + I + +TG C+  L GHRRTPW V FH
Sbjct:    45 KKVELPDSPRSTFLLAFSPDRTLMASTHVNHNIYITEVKTGKCVHSLVGHRRTPWCVTFH 104

Query:   159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWR 218
             P  P +IASG LD EVR+W+          D    IAS+AFH + +LL +A+ ++++ W 
Sbjct:   105 PTIPGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEIHFWD 164

Query:   219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSES 264
             ++ RE  +  +      R +R V F P     LLTA VN  +  +S
Sbjct:   165 WSRREPFAVVKTASEMER-VRLVRFDP-LGHYLLTAIVNPSNQQQS 208

GO:0005737 "cytoplasm" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

UNIPROTKB|Q9C0C7 AMBRA1 "Activating molecule in BECN1-regulated autophagy protein 1" [Homo sapiens (taxid:9606)]

 Score = 301 (111.0 bits), Expect = 7.7e-24, Sum P(2) = 7.7e-24
 Identities = 79/213 (37%), Positives = 110/213 (51%)

Query:    46 EVAPRTKHSSKRLLG-ETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLS 104
             +V P  K++ + L G E   +  G+   + E   D  R    W++ E       K   L 
Sbjct:     2 KVVPE-KNAVRILWGRERGARAMGAQRLLQELVEDKTR----WMKWEG------KRVELP 50

Query:   105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI 164
               PRST   AFSPD   LASTH +H + I + +TG C+  L GHRRTPW V FHP    +
Sbjct:    51 DSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKTGKCVHSLIGHRRTPWCVTFHPTISGL 110

Query:   165 IASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREE 224
             IASG LD EVR+W+          D    IAS+AFH + +LL +A+ ++++ W ++ RE 
Sbjct:   111 IASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEIHFWDWSRREP 170

Query:   225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257
              +  +      R +R V F P     LLTA VN
Sbjct:   171 FAVVKTASEMER-VRLVRFDP-LGHYLLTAIVN 201

GO:0030154 "cell differentiation" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:2443564 Ambra1 "autophagy/beclin 1 regulator 1" [Mus musculus (taxid:10090)]

 Score = 301 (111.0 bits), Expect = 7.7e-24, Sum P(2) = 7.7e-24
 Identities = 79/213 (37%), Positives = 110/213 (51%)

Query:    46 EVAPRTKHSSKRLLG-ETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLS 104
             +V P  K++ + L G E   +  G+   + E   D  R    W++ E       K   L 
Sbjct:     2 KVVPE-KNAVRILWGRERGTRAMGAQRLLQELVEDKTR----WMKWEG------KRVELP 50

Query:   105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI 164
               PRST   AFSPD   LASTH +H + I + +TG C+  L GHRRTPW V FHP    +
Sbjct:    51 DSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKTGKCVHSLIGHRRTPWCVTFHPTISGL 110

Query:   165 IASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREE 224
             IASG LD EVR+W+          D    IAS+AFH + +LL +A+ ++++ W ++ RE 
Sbjct:   111 IASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEIHFWDWSRREP 170

Query:   225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257
              +  +      R +R V F P     LLTA VN
Sbjct:   171 FAVVKTASEMER-VRLVRFDP-LGHYLLTAIVN 201

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISA

GO:0006914 "autophagy" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0021915 "neural tube development" evidence=IMP

GO:0030154 "cell differentiation" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

UNIPROTKB|F1MPW0 F1MPW0 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 298 (110.0 bits), Expect = 8.0e-24, Sum P(2) = 8.0e-24
 Identities = 67/159 (42%), Positives = 88/159 (55%)

Query:    99 KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFH 158
             K   L   PRST   AFSPD   LASTH +H + I + +TG C+  L GHRRTPW V FH
Sbjct:    45 KRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKTGKCVHSLIGHRRTPWCVTFH 104

Query:   159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWR 218
             P    +IASG LD EVR+W+          D    IAS+AFH + +LL +A+  +++ W 
Sbjct:   105 PTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATASEIHFWD 164

Query:   219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257
             ++ RE  +  +      R +R V F P     LLTA VN
Sbjct:   165 WSRREPFAVVKTASEMER-VRLVRFDP-LGHYLLTAIVN 201

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1SI99 F1SI99 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 300 (110.7 bits), Expect = 9.9e-24, Sum P(2) = 9.9e-24
 Identities = 67/159 (42%), Positives = 89/159 (55%)

Query:    99 KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFH 158
             K   L   PRST   AFSPD   LASTH +H + I + +TG C+  L GHRRTPW V FH
Sbjct:    45 KRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKTGKCVHSLIGHRRTPWCVTFH 104

Query:   159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWR 218
             P    +IASG LD EVR+W+          D    IAS+AFH + +LL +A+ ++++ W 
Sbjct:   105 PTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEIHFWD 164

Query:   219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257
             ++ RE  +  +      R +R V F P     LLTA VN
Sbjct:   165 WSRREPFAVVKTASEMER-VRLVRFDP-LGHYLLTAIVN 201

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 162 (62.1 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
 Identities = 36/106 (33%), Positives = 56/106 (52%)

Query:   114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
             A+S D K + S   D T+KI D ++G  +K L GH+   + V F+P +  +I SGS D  
Sbjct:    95 AWSQDSKLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQS-NLIVSGSFDEN 153

Query:   174 VRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS-GHKLYIW 217
             VR+W+ +T EC      +  P+  + F+  G L+   S    + IW
Sbjct:   154 VRIWDVNTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIW 199

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 169 (64.5 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 37/106 (34%), Positives = 57/106 (53%)

Query:   114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
             A+S D   L S   D T+KI D  +G CLK L GH    +   F+P +  +I SGS D  
Sbjct:    68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDES 126

Query:   174 VRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVASGHKLY-IW 217
             VR+W+  T +C+ +   +  P++++ F+  G L+  +S   L  IW
Sbjct:   127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 169 (64.5 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 37/106 (34%), Positives = 57/106 (53%)

Query:   114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
             A+S D   L S   D T+KI D  +G CLK L GH    +   F+P +  +I SGS D  
Sbjct:    94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDES 152

Query:   174 VRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVASGHKLY-IW 217
             VR+W+  T +C+ +   +  P++++ F+  G L+  +S   L  IW
Sbjct:   153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|P61964 WDR5 "WD repeat-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 37/106 (34%), Positives = 57/106 (53%)

Query:   114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
             A+S D   L S   D T+KI D  +G CLK L GH    +   F+P +  +I SGS D  
Sbjct:    94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDES 152

Query:   174 VRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVASGHKLY-IW 217
             VR+W+  T +C+ +   +  P++++ F+  G L+  +S   L  IW
Sbjct:   153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IDA

GO:0071339 "MLL1 complex" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

GO:0043984 "histone H4-K16 acetylation" evidence=IDA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IDA

GO:0000123 "histone acetyltransferase complex" evidence=IDA

GO:0043981 "histone H4-K5 acetylation" evidence=IDA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IDA

GO:0043982 "histone H4-K8 acetylation" evidence=IDA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0043966 "histone H3 acetylation" evidence=IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020392001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (835 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	767
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-06
smart00320	40	smart00320, WD40, WD40 repeats	6e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 6/135 (4%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
           AFSPDG+ L+S+  D T+K+ D +TG CL  L GH      V F P + T +AS S D  
Sbjct: 100 AFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGT 158

Query: 174 VRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIV 231
           ++LW+  T +C+ +       + S+AF   GE L  +S    + +W  +  +   + R  
Sbjct: 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH 218

Query: 232 LRTRRSLRAVHFHPH 246
                 + +V F P 
Sbjct: 219 ---ENGVNSVAFSPD 230

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 24/159 (15%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
           AFSPDG  +AS+  D T+K+ D +TG C+  L GH      V F P    +++S S D  
Sbjct: 142 AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGT 200

Query: 174 VRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIV 231
           ++LW+ ST +C+G+ R     + S+AF   G LLA  S    + +W              
Sbjct: 201 IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWD------------- 247

Query: 232 LRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLAT 270
           LRT   ++ +  H        T  V  L  S     LA+
Sbjct: 248 LRTGECVQTLSGH--------TNSVTSLAWSPDGKRLAS 278

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 84.8 bits (208), Expect = 4e-17
 Identities = 60/211 (28%), Positives = 90/211 (42%), Gaps = 14/211 (6%)

Query: 66  CSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLAST 125
            S   + I  A       +  W  +     +R     L     S  + AFSPDGK LAS 
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT----LEGHSESVTSLAFSPDGKLLASG 173

Query: 126 HG-DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC 184
              D T+K+ D +TG  L  L GH      + F P    +IASGS D  +RLW+ ST + 
Sbjct: 174 SSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233

Query: 185 IGSRDFYRPIASI-AFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVH 242
           + S       + + +F   G LLA  S    + +W  ++R  +S  R +     S+ +V 
Sbjct: 234 LRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLW--DLRSSSSLLRTLSGHSSSVLSVA 291

Query: 243 FHPHAAPLLL-----TAEVNDLDSSESSLTL 268
           F P    L       T  + DL++ +   +L
Sbjct: 292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 8/137 (5%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD 171
             AFSPDGK LA+  GD T+K+ D +TG  L+ L GH      V         +ASGS D
Sbjct: 14  CVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY-LASGSSD 72

Query: 172 HEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPR 229
             +RLW+  T EC+ +       ++S+AF   G +L+ +S  K + +W      ET    
Sbjct: 73  KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW----DVETGKCL 128

Query: 230 IVLRT-RRSLRAVHFHP 245
             LR     + +V F P
Sbjct: 129 TTLRGHTDWVNSVAFSP 145

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 9/112 (8%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD 171
           + AFSPDG+ L S+  D T+K+ D  TG CL  L GH      V F P +  ++ASGS D
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSED 240

Query: 172 HEVRLWNASTAECI----GSRDFYRPIASIAFHASGELLAVASG-HKLYIWR 218
             +R+W+  T EC+    G  +    + S+A+   G+ LA  S    + IW 
Sbjct: 241 GTIRVWDLRTGECVQTLSGHTN---SVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 71.3 bits (173), Expect = 8e-13
 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH--GHRRTPWVVRFHPLNPTIIASGS 169
           + AFSPDGK LAS   D TV++ D +TG  L  L   GH      + F P    +++ GS
Sbjct: 289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS 348

Query: 170 LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSP 228
            D  +RLW+  T + + + + +  + S++F   G +++  S    + +W  +     S  
Sbjct: 349 DDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLST---GSLL 405

Query: 229 RIVLRTRRSLRAVHFHP 245
           R +      + ++ F P
Sbjct: 406 RNLDGHTSRVTSLDFSP 422

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.9 bits (120), Expect = 2e-06
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG 168
           + ++ +FSPDG+ ++S   D TV++ D  TGS L+ L GH      + F P +   +ASG
Sbjct: 372 NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP-DGKSLASG 430

Query: 169 SLDHEVRLWNAST 181
           S D+ +RLW+  T
Sbjct: 431 SSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.5 bits (116), Expect = 6e-06
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 13/119 (10%)

Query: 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF---YRPIASI 197
             + L GH      V F P    ++A+GS D  +++W+  T E +  R       P+  +
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELL--RTLKGHTGPVRDV 57

Query: 198 AFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRS-LRAVHFHPHAAPLLLTA 254
           A  A G  LA  S    + +W     E        L    S + +V F P    +L ++
Sbjct: 58  AASADGTYLASGSSDKTIRLWDLETGECVR----TLTGHTSYVSSVAFSPD-GRILSSS 111

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 138 TGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178
           +G  LK L GH      V F P +   +ASGS D  ++LW+
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.9 bits (115), Expect = 7e-06
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 7/147 (4%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLHGHRRTPW--VVRFHPLNPTIIASGS- 169
           AFSPDG+ L S   D T+K+ D   G   +K L G   +    +    P   +I+ + S 
Sbjct: 72  AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131

Query: 170 LDHEVRLWNASTA-ECIGS-RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSS 227
           LD  V+LW+ ST  + I +       + S+AF   G+LLA  S     I  +++R     
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR-TGKP 190

Query: 228 PRIVLRTRRSLRAVHFHPHAAPLLLTA 254
              +      + ++ F P    L+ + 
Sbjct: 191 LSTLAGHTDPVSSLAFSPDGGLLIASG 217

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178
           G  L+ L GH      V F P +  ++ASGS D  VR+W+
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 44.7 bits (105), Expect = 2e-04
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 122 LASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181
           +AS++ +  V++ D      +  +  H +  W + +   +PT++ASGS D  V+LW+ + 
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607

Query: 182 AECIGSRDFYRPIASIAFHA-SGELLAVASG-HKLYIWRYNMREETSSPRIVLRT 234
              IG+      I  + F + SG  LA  S  HK+Y   Y++R    +P++ L T
Sbjct: 608 GVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYY--YDLR----NPKLPLCT 656

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	767
KOG0303	472	consensus Actin-binding protein Coronin, contains	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.94
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.94
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.94
PTZ00421	493	coronin; Provisional	99.93
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.92
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.92
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.92
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.92
KOG0266	456	consensus WD40 repeat-containing protein [General	99.91
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.9
KOG0286	343	consensus G-protein beta subunit [General function	99.9
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.89
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.89
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.88
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.88
KOG0286	343	consensus G-protein beta subunit [General function	99.87
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.87
KOG0266	456	consensus WD40 repeat-containing protein [General	99.87
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.87
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.86
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.85
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.85
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.85
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.85
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.84
PLN00181	793	protein SPA1-RELATED; Provisional	99.84
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.84
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.84
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.84
PTZ00421	493	coronin; Provisional	99.83
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.83
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.83
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.83
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.83
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.82
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.82
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.82
KOG0645	312	consensus WD40 repeat protein [General function pr	99.81
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.81
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.81
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.81
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.81
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.8
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.8
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.8
PLN00181	793	protein SPA1-RELATED; Provisional	99.8
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.79
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.79
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.78
KOG0645	312	consensus WD40 repeat protein [General function pr	99.78
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.78
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.78
KOG0639	705	consensus Transducin-like enhancer of split protei	99.77
KOG0296	399	consensus Angio-associated migratory cell protein	99.77
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.77
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.76
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.76
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.75
PTZ00420	568	coronin; Provisional	99.75
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.75
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.75
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.74
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.74
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.74
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.73
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.73
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.73
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.73
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.73
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.72
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.72
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.72
KOG0289	506	consensus mRNA splicing factor [General function p	99.71
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.71
KOG0643	327	consensus Translation initiation factor 3, subunit	99.71
KOG0267	825	consensus Microtubule severing protein katanin p80	99.71
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.71
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.71
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.71
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.7
KOG0289	506	consensus mRNA splicing factor [General function p	99.7
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.7
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.7
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.69
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.69
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.68
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.68
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.68
KOG0643	327	consensus Translation initiation factor 3, subunit	99.68
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.67
KOG0267	825	consensus Microtubule severing protein katanin p80	99.67
KOG0641	350	consensus WD40 repeat protein [General function pr	99.67
KOG0646	476	consensus WD40 repeat protein [General function pr	99.67
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.67
KOG0296	399	consensus Angio-associated migratory cell protein	99.67
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.67
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.67
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.66
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.66
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.65
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.64
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.64
KOG2096	420	consensus WD40 repeat protein [General function pr	99.64
KOG2096	420	consensus WD40 repeat protein [General function pr	99.62
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.62
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.62
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.61
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.61
KOG1274	933	consensus WD40 repeat protein [General function pr	99.6
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.6
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.59
KOG1273	405	consensus WD40 repeat protein [General function pr	99.57
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.57
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.57
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.57
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.57
KOG0639	705	consensus Transducin-like enhancer of split protei	99.56
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.56
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.55
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.55
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.55
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.54
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.54
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.54
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.54
KOG1274	933	consensus WD40 repeat protein [General function pr	99.52
KOG1539	910	consensus WD repeat protein [General function pred	99.51
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.51
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.5
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.49
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.48
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.48
KOG4328	498	consensus WD40 protein [Function unknown]	99.47
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.47
KOG1539	910	consensus WD repeat protein [General function pred	99.46
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.45
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.45
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.45
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.44
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.44
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.44
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.42
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.42
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.41
PRK05137	435	tolB translocation protein TolB; Provisional	99.4
PRK01742	429	tolB translocation protein TolB; Provisional	99.39
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.39
KOG2055	514	consensus WD40 repeat protein [General function pr	99.39
KOG2048	691	consensus WD40 repeat protein [General function pr	99.38
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.37
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.37
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.36
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.36
KOG0646	476	consensus WD40 repeat protein [General function pr	99.35
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.35
KOG0641	350	consensus WD40 repeat protein [General function pr	99.34
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.33
COG2319	466	FOG: WD40 repeat [General function prediction only	99.33
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.32
PRK03629	429	tolB translocation protein TolB; Provisional	99.32
KOG1188	376	consensus WD40 repeat protein [General function pr	99.31
KOG2055	514	consensus WD40 repeat protein [General function pr	99.31
PRK04922	433	tolB translocation protein TolB; Provisional	99.31
KOG1310	758	consensus WD40 repeat protein [General function pr	99.31
KOG1273	405	consensus WD40 repeat protein [General function pr	99.29
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.28
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.27
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.27
KOG2048	691	consensus WD40 repeat protein [General function pr	99.27
KOG4328	498	consensus WD40 protein [Function unknown]	99.25
KOG4227	609	consensus WD40 repeat protein [General function pr	99.25
COG2319	466	FOG: WD40 repeat [General function prediction only	99.24
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.24
PRK11028	330	6-phosphogluconolactonase; Provisional	99.24
PRK02889	427	tolB translocation protein TolB; Provisional	99.24
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.23
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.22
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.22
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.22
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.22
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.22
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.22
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.21
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.2
PRK01742	429	tolB translocation protein TolB; Provisional	99.2
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.18
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.18
PRK03629	429	tolB translocation protein TolB; Provisional	99.17
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.16
PRK11028	330	6-phosphogluconolactonase; Provisional	99.15
KOG4227	609	consensus WD40 repeat protein [General function pr	99.15
KOG0649	325	consensus WD40 repeat protein [General function pr	99.15
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.14
KOG1188	376	consensus WD40 repeat protein [General function pr	99.14
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.13
PRK05137	435	tolB translocation protein TolB; Provisional	99.13
PRK04792	448	tolB translocation protein TolB; Provisional	99.13
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.13
PRK00178	430	tolB translocation protein TolB; Provisional	99.12
PRK04922	433	tolB translocation protein TolB; Provisional	99.12
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.11
KOG2139	445	consensus WD40 repeat protein [General function pr	99.11
KOG2139	445	consensus WD40 repeat protein [General function pr	99.09
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.08
PRK02889	427	tolB translocation protein TolB; Provisional	99.08
KOG1310	758	consensus WD40 repeat protein [General function pr	99.07
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.01
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.0
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.99
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.98
KOG0649	325	consensus WD40 repeat protein [General function pr	98.97
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.97
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.97
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.92
PRK00178	430	tolB translocation protein TolB; Provisional	98.92
PRK01029	428	tolB translocation protein TolB; Provisional	98.92
KOG4547	541	consensus WD40 repeat-containing protein [General	98.9
PRK01029	428	tolB translocation protein TolB; Provisional	98.9
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.88
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.86
KOG1963	792	consensus WD40 repeat protein [General function pr	98.86
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.85
PRK04792	448	tolB translocation protein TolB; Provisional	98.84
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.83
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.82
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.82
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.78
KOG1963	792	consensus WD40 repeat protein [General function pr	98.77
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.76
PRK04043	419	tolB translocation protein TolB; Provisional	98.76
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.74
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.71
KOG2321	703	consensus WD40 repeat protein [General function pr	98.68
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.66
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.64
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.64
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.64
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.62
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.61
KOG2321	703	consensus WD40 repeat protein [General function pr	98.6
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.6
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.58
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.57
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.56
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.54
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.52
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.52
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.46
PRK04043	419	tolB translocation protein TolB; Provisional	98.43
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.41
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.37
KOG4547	541	consensus WD40 repeat-containing protein [General	98.35
COG4946	668	Uncharacterized protein related to the periplasmic	98.34
KOG2315	566	consensus Predicted translation initiation factor	98.33
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.32
COG4946	668	Uncharacterized protein related to the periplasmic	98.31
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.27
KOG1334	559	consensus WD40 repeat protein [General function pr	98.25
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.25
KOG1334	559	consensus WD40 repeat protein [General function pr	98.22
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.2
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.16
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.12
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.08
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.05
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.04
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.02
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.96
KOG2695	425	consensus WD40 repeat protein [General function pr	97.95
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.93
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.92
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.87
KOG2315	566	consensus Predicted translation initiation factor	97.87
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.83
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.82
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.8
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.8
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.78
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.76
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.75
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	97.75
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.75
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.73
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.73
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.69
KOG2314	698	consensus Translation initiation factor 3, subunit	97.66
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.63
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.62
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.62
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.61
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	97.6
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.59
KOG2314	698	consensus Translation initiation factor 3, subunit	97.53
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.52
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.5
KOG2695	425	consensus WD40 repeat protein [General function pr	97.49
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.47
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.41
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.4
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.39
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.39
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.38
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.35
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.35
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.33
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.31
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.27
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.23
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.21
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.21
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	97.2
KOG3621	726	consensus WD40 repeat-containing protein [General	97.15
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.13
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.1
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	97.07
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.99
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.83
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.81
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.73
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	96.65
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.64
KOG1912	1062	consensus WD40 repeat protein [General function pr	96.58
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.51
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.27
KOG3621	726	consensus WD40 repeat-containing protein [General	96.27
PRK02888	635	nitrous-oxide reductase; Validated	96.26
COG3391	381	Uncharacterized conserved protein [Function unknow	96.2
PRK02888	635	nitrous-oxide reductase; Validated	96.16
PRK13616	591	lipoprotein LpqB; Provisional	96.15
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.14
COG3391	381	Uncharacterized conserved protein [Function unknow	96.11
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.03
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.99
PF08953	65	DUF1899: Domain of unknown function (DUF1899); Int	95.97
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.93
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.85
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	95.82
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.81
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.7
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.68
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.65
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.62
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.49
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	95.48
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.36
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.31
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.14
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.12
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	94.9
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.6
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	94.6
PRK13616	591	lipoprotein LpqB; Provisional	94.56
KOG2395	644	consensus Protein involved in vacuole import and d	94.55
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.46
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.28
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	93.93
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.92
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	93.88
KOG1008	783	consensus Uncharacterized conserved protein, conta	93.77
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	93.61
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	93.53
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.48
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.29
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	93.22
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.87
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	92.82
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	92.61
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.51
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	92.45
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	92.43
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	92.35
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.3
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.1
KOG2444	238	consensus WD40 repeat protein [General function pr	92.08
PRK13684	334	Ycf48-like protein; Provisional	91.94
KOG2395	644	consensus Protein involved in vacuole import and d	91.92
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	91.62
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	91.49
PF08954	136	DUF1900: Domain of unknown function (DUF1900); Int	91.28
COG5167	776	VID27 Protein involved in vacuole import and degra	90.97
PRK10115	686	protease 2; Provisional	90.84
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	90.77
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	90.13
PRK10115	686	protease 2; Provisional	89.81
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	89.7
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	89.6
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	89.57
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	89.38
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	89.16
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	89.1
KOG2444	238	consensus WD40 repeat protein [General function pr	89.07
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	88.83
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	88.8
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	88.4
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	88.36
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	88.34
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	88.22
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	87.67
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	86.78
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	86.51
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	86.28
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	86.23
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	85.64
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	85.44
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	85.35
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	85.13
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	84.87
PLN00033	398	photosystem II stability/assembly factor; Provisio	84.85
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	84.63
PF13449	326	Phytase-like: Esterase-like activity of phytase	84.38
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	83.44
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	83.31
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	83.24
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	83.06
KOG2377	657	consensus Uncharacterized conserved protein [Funct	82.23
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	81.52
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	80.63
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	80.59

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=100.00  E-value=1.1e-32  Score=293.07  Aligned_cols=310  Identities=18%  Similarity=0.221  Sum_probs=258.9

Q ss_pred             CCCCCCCcceecccccccccCCCccCcceeecccccceecCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCCCCC
Q 004217           28 SNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPP  107 (767)
Q Consensus        28 ~~~r~sk~rnVf~~~~kre~~~~~~~~sk~~wd~~~~~~~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~gH~  107 (767)
                      +-.|.|||||||++..|++.||.+.++++..||.+.+..|+.|-+++.-.+-+|.+++-  .-.++.-.|.....+.||+
T Consensus         4 ~~vR~SKfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~Vi--Pl~k~Gr~d~~~P~v~GHt   81 (472)
T KOG0303|consen    4 HVVRSSKFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVI--PLVKTGRMDASYPLVCGHT   81 (472)
T ss_pred             hhhhhhhhHHHhccccchhhhhcceeeeeeeccccccccCCceEEEEEecCCCcceeec--ccccccccCCCCCCccCcc
Confidence            34789999999999999999999999999999999988886664444444333333332  3344444566666788999


Q ss_pred             CCeEEEEECC-CCCeEEEEeCCCeEEEEECCCC-------eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEEC
Q 004217          108 RSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (767)
Q Consensus       108 ~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg-------~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl  179 (767)
                      +.|.+++|+| +...||+|+.|.+|+||++..+       +++..|.||...|--++|||.-.+.|+|++.|.+|.+||+
T Consensus        82 ~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv  161 (472)
T KOG0303|consen   82 APVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNV  161 (472)
T ss_pred             ccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEec
Confidence            9999999999 8889999999999999998654       4577889999999999999988899999999999999999


Q ss_pred             CCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCC
Q 004217          180 STAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVND  258 (767)
Q Consensus       180 ~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwd  258 (767)
                      .+++.+..+.|...|.++.|+-||.+|++++.|+ |+|||.++++.+.   ....|.+.-                    
T Consensus       162 ~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~---e~~~heG~k--------------------  218 (472)
T KOG0303|consen  162 GTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS---EGVAHEGAK--------------------  218 (472)
T ss_pred             cCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee---ecccccCCC--------------------
Confidence            9999999999999999999999999999999766 9999999998655   223342210                    


Q ss_pred             cCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCccccccccc
Q 004217          259 LDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRS  338 (767)
Q Consensus       259 l~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~s  338 (767)
                                         +.+++++.+                 ..++..+||.-+.|.++.|+..++..+.+-+++|.
T Consensus       219 -------------------~~Raifl~~-----------------g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt  262 (472)
T KOG0303|consen  219 -------------------PARAIFLAS-----------------GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT  262 (472)
T ss_pred             -------------------cceeEEecc-----------------CceeeeccccccccceeccCcccccCcceeEEecc
Confidence                               223333322                 11334567788888888999999999999999999


Q ss_pred             CCceeeeeccCCCCceeeeeccCCCCCCCCCCCCCCccccccccccCCcccccccccccc
Q 004217          339 SSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLD  398 (767)
Q Consensus       339 s~~~~l~~~~~~~~q~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (767)
                      |+++.++|||+++.--+++-..+...|||+..++.|+.||++.|.+..||++|+.||..-
T Consensus       263 SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKRG  322 (472)
T KOG0303|consen  263 SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKRG  322 (472)
T ss_pred             CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccccc
Confidence            999999999999998888888888889999999999999999999999999999999765

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=2.4e-26  Score=246.64  Aligned_cols=196  Identities=24%  Similarity=0.326  Sum_probs=170.7

Q ss_pred             eEEEEEEcC--CCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217           72 QIFEAGRDA--RRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        72 ~~~vA~sd~--g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L  145 (767)
                      ...+.+.+.  +..+++++.||++++|++.+.    .|.+|...|..++|+|+|++|++++.|.+-++||++++..+...
T Consensus       220 v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q  299 (459)
T KOG0272|consen  220 VGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ  299 (459)
T ss_pred             eeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh
Confidence            444445443  779999999999999999884    58899999999999999999999999999999999999999889


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCc
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMRE  223 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~  223 (767)
                      .||...|.+++|+| ++.+++||+.|..-+|||+++++++..+. |..+|.+|+|+|+|..||+|+.|. ++|||++...
T Consensus       300 EGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~  378 (459)
T KOG0272|consen  300 EGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS  378 (459)
T ss_pred             cccccccceeEecC-CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc
Confidence            99999999999999 99999999999999999999999998875 999999999999999999999655 9999999988


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeEeecCCC
Q 004217          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLATSPGY  274 (767)
Q Consensus       224 ~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~~~~l~t~sG~  274 (767)
                      .+.   .+.+|.+-|+.|.|+|+..++++|++      +|.-+.|..   +.++.||
T Consensus       379 ~ly---~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~---~ksLaGH  429 (459)
T KOG0272|consen  379 ELY---TIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP---LKSLAGH  429 (459)
T ss_pred             cce---ecccccchhhheEecccCCeEEEEcccCcceeeecCCCccc---chhhcCC
Confidence            755   88999999999999996666666665      554444443   4444455

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=4e-26  Score=244.90  Aligned_cols=200  Identities=23%  Similarity=0.241  Sum_probs=178.1

Q ss_pred             cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCC--CCeEEEEeCCCeEEEEECCCCeEEE
Q 004217           70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGSCLK  143 (767)
Q Consensus        70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpD--G~~LASgs~DGtVrVWDl~tg~~l~  143 (767)
                      .......++.++..|++++.+|.+++|+...+    +|.+|+..|.++.|+|.  +..||+|+.||+|++|++.+...+.
T Consensus       176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~  255 (459)
T KOG0272|consen  176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ  255 (459)
T ss_pred             CcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh
Confidence            33556667889999999999999999999887    57899999999999995  6789999999999999999989999


Q ss_pred             EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCC
Q 004217          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNM  221 (767)
Q Consensus       144 ~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t  221 (767)
                      .|.+|...|..++||| ++++|+|++.|.+-++||++++..+.. -+|...|.+++|++||.++++|+-|. -+|||+++
T Consensus       256 ~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt  334 (459)
T KOG0272|consen  256 DLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT  334 (459)
T ss_pred             hhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc
Confidence            9999999999999999 999999999999999999999877665 46999999999999999999999776 89999999


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCcc
Q 004217          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR  276 (767)
Q Consensus       222 ~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~  276 (767)
                      +..+.   .+.+|...|.+|+|+|+|..|+++++     +||++....   +.+..+|.+
T Consensus       335 gr~im---~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~---ly~ipAH~n  388 (459)
T KOG0272|consen  335 GRCIM---FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE---LYTIPAHSN  388 (459)
T ss_pred             CcEEE---EecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc---ceecccccc
Confidence            99766   88999999999999999998777544     999986555   445555544

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.3e-25  Score=238.28  Aligned_cols=261  Identities=16%  Similarity=0.228  Sum_probs=200.8

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE-EEE
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-KVL  145 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l-~~L  145 (767)
                      ..+++.++.++..|++|+.|.++|+||+.+.    +.++|..-|.|++|+|||+.||+|+.||+|++||.++|+++ ..|
T Consensus       117 ~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l  196 (480)
T KOG0271|consen  117 AVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRAL  196 (480)
T ss_pred             cEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccc
Confidence            3788889999999999999999999999887    47899999999999999999999999999999999998765 789


Q ss_pred             ccCCCCcEEEEEccC----CCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEc
Q 004217          146 HGHRRTPWVVRFHPL----NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRY  219 (767)
Q Consensus       146 ~gH~~~V~sLafsP~----dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl  219 (767)
                      .+|+..|++++|.|.    ..++|++++.||+|+|||+..++++..+ +|..+|+|+.|--+| +|++|+.|+ |++|+.
T Consensus       197 ~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a  275 (480)
T KOG0271|consen  197 RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRA  275 (480)
T ss_pred             cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEc
Confidence            999999999999873    4579999999999999999999998885 699999999997554 899999766 999999


Q ss_pred             CCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCC---------------------CCcceeEeecCCCccCC
Q 004217          220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDS---------------------SESSLTLATSPGYWRYP  278 (767)
Q Consensus       220 ~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s---------------------~~~~~~l~t~sG~~~~p  278 (767)
                      ..+...+   .+.+|...|+.++.+-|-  .+-++.......                     .....++....++    
T Consensus       276 ~dG~~~r---~lkGHahwvN~lalsTdy--~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~----  346 (480)
T KOG0271|consen  276 LDGKLCR---ELKGHAHWVNHLALSTDY--VLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF----  346 (480)
T ss_pred             cchhHHH---hhcccchheeeeeccchh--hhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc----
Confidence            9988765   889999999999988542  233332111100                     0001122222222    


Q ss_pred             CCeEEEecCCCCC-CCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeee
Q 004217          279 PPVICMAGAHSSS-HPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELV  357 (767)
Q Consensus       279 ~~~v~l~~~~Ssd-~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~  357 (767)
                        .+++|+..... .+.-.+|   ...-+..+.||||+++|+.                 .|....+..|+-.+||+-..
T Consensus       347 --tlflW~p~~~kkpi~rmtg---Hq~lVn~V~fSPd~r~IAS-----------------aSFDkSVkLW~g~tGk~las  404 (480)
T KOG0271|consen  347 --TLFLWNPFKSKKPITRMTG---HQALVNHVSFSPDGRYIAS-----------------ASFDKSVKLWDGRTGKFLAS  404 (480)
T ss_pred             --eEEEecccccccchhhhhc---hhhheeeEEECCCccEEEE-----------------eecccceeeeeCCCcchhhh
Confidence              46666633221 1111122   2223336999999999996                 35556789999999999988


Q ss_pred             ec-cCCC
Q 004217          358 LS-PIAS  363 (767)
Q Consensus       358 ~~-p~~p  363 (767)
                      +. .+++
T Consensus       405 fRGHv~~  411 (480)
T KOG0271|consen  405 FRGHVAA  411 (480)
T ss_pred             hhhccce
Confidence            87 5653

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=5.6e-24  Score=243.38  Aligned_cols=283  Identities=17%  Similarity=0.183  Sum_probs=199.1

Q ss_pred             CCCcceecccccccccCCCccCcceeecc-cccceecCCcceEEEEEEcCCCEEEEE-eCCCeEEEEeCCCCCCCCCCCC
Q 004217           32 NSRLRNVFGLLAQREVAPRTKHSSKRLLG-ETARKCSGSFSQIFEAGRDARRGLASW-VEAESLHHLRPKYCPLSPPPRS  109 (767)
Q Consensus        32 ~sk~rnVf~~~~kre~~~~~~~~sk~~wd-~~~~~~~~s~s~~~vA~sd~g~~LaSg-s~DgsIrlWd~~t~~L~gH~~s  109 (767)
                      .|||||||+...+++.++.+.++....|+ .+...++..+.++  .+...|...+.. .+.|.+   ......+.+|.+.
T Consensus         3 ~sk~rh~~g~~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~--~w~~~gg~~v~~~~~~G~~---~~~~~~l~GH~~~   77 (493)
T PTZ00421          3 VSRFRHTQGVPARPDRHFLNVTPSTALWDCSNTIACNDRFIAV--PWQQLGSTAVLKHTDYGKL---ASNPPILLGQEGP   77 (493)
T ss_pred             cccccccccccCCcccceeccccccccCCCCCcEeECCceEEE--EEecCCceEEeeccccccC---CCCCceEeCCCCC
Confidence            58999999999999999999999999999 5556666333221  121122221111 111110   0111236789999


Q ss_pred             eEEEEECC-CCCeEEEEeCCCeEEEEECCCC-------eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC
Q 004217          110 TIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (767)
Q Consensus       110 VtsVaFSp-DG~~LASgs~DGtVrVWDl~tg-------~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t  181 (767)
                      |.+++|+| ++++|++|+.|++|+|||+.++       +.+..+.+|...|.+++|+|.+.++|++++.|++|+|||+.+
T Consensus        78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t  157 (493)
T PTZ00421         78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER  157 (493)
T ss_pred             EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC
Confidence            99999999 8999999999999999999765       356788999999999999995567999999999999999999


Q ss_pred             CeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCC-eEEEEEccCCCeEEEEEeeCC
Q 004217          182 AECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRS-LRAVHFHPHAAPLLLTAEVND  258 (767)
Q Consensus       182 g~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~-VtsVaFSPDG~~LlaSgsvwd  258 (767)
                      ++.+..+. |...|.+++|+|+|.+|++++.|+ |+|||+++++.+.   .+..|... +..+.|.+++..+++++... 
T Consensus       158 g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~---tl~~H~~~~~~~~~w~~~~~~ivt~G~s~-  233 (493)
T PTZ00421        158 GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS---SVEAHASAKSQRCLWAKRKDLIITLGCSK-  233 (493)
T ss_pred             CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE---EEecCCCCcceEEEEcCCCCeEEEEecCC-
Confidence            98887765 888999999999999999999666 9999999887644   56677654 45788999988777665210 


Q ss_pred             cCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCccccccccc
Q 004217          259 LDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRS  338 (767)
Q Consensus       259 l~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~s  338 (767)
                                        ...+.+.+|+....... +.....+.....+.+.|++|+..+++...               
T Consensus       234 ------------------s~Dr~VklWDlr~~~~p-~~~~~~d~~~~~~~~~~d~d~~~L~lggk---------------  279 (493)
T PTZ00421        234 ------------------SQQRQIMLWDTRKMASP-YSTVDLDQSSALFIPFFDEDTNLLYIGSK---------------  279 (493)
T ss_pred             ------------------CCCCeEEEEeCCCCCCc-eeEeccCCCCceEEEEEcCCCCEEEEEEe---------------
Confidence                              00123444443221111 11111112233457889999999887221               


Q ss_pred             CCceeeeeccCCCCceeeee
Q 004217          339 SSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       339 s~~~~l~~~~~~~~q~~~~~  358 (767)
                       ....+.+||..+++...++
T Consensus       280 -gDg~Iriwdl~~~~~~~~~  298 (493)
T PTZ00421        280 -GEGNIRCFELMNERLTFCS  298 (493)
T ss_pred             -CCCeEEEEEeeCCceEEEe
Confidence             1234778888776655443

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=8.3e-25  Score=232.29  Aligned_cols=264  Identities=21%  Similarity=0.257  Sum_probs=204.1

Q ss_pred             CCCccCcceeecccccc----eecC-CcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECC
Q 004217           48 APRTKHSSKRLLGETAR----KCSG-SFSQIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSP  117 (767)
Q Consensus        48 ~~~~~~~sk~~wd~~~~----~~~~-s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSp  117 (767)
                      .........++||-...    .|.+ ..=+++++++.+++.|++|+.||+|++||.+++     .|.+|+..|++++|-|
T Consensus       131 ~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep  210 (480)
T KOG0271|consen  131 VTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEP  210 (480)
T ss_pred             EecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecc
Confidence            34555667889986532    2322 223889999999999999999999999999887     4889999999999976


Q ss_pred             -----CCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CC
Q 004217          118 -----DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FY  191 (767)
Q Consensus       118 -----DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~  191 (767)
                           ..++||+++.||.|+|||+..++++..+.||+..|+|++|-  +..++++|+.|++|++|+...|.+.+++. |.
T Consensus       211 ~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHa  288 (480)
T KOG0271|consen  211 LHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHA  288 (480)
T ss_pred             cccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccc
Confidence                 67899999999999999999999999999999999999995  37899999999999999999999988864 78


Q ss_pred             CCeEEEEEc-----------CCCCE-------------------------EEEEECCc-EEEEEcCCCccccCCeEEecC
Q 004217          192 RPIASIAFH-----------ASGEL-------------------------LAVASGHK-LYIWRYNMREETSSPRIVLRT  234 (767)
Q Consensus       192 ~~VtsVafS-----------PdG~~-------------------------LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h  234 (767)
                      ..|+.++.+           |.++.                         |++|+||. +.+|+-...+.  +...+.+|
T Consensus       289 hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk--pi~rmtgH  366 (480)
T KOG0271|consen  289 HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK--PITRMTGH  366 (480)
T ss_pred             hheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc--chhhhhch
Confidence            888877655           44444                         99999877 99998765543  33478899


Q ss_pred             CCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCC-----
Q 004217          235 RRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITP-----  304 (767)
Q Consensus       235 ~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~sl-----  304 (767)
                      ..-|+.+.||||++++++++=     .|+.++++   .+.++.||+.   .+..++-  +.|...+.+++.+.++     
T Consensus       367 q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk---~lasfRGHv~---~VYqvaw--saDsRLlVS~SkDsTLKvw~V  438 (480)
T KOG0271|consen  367 QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK---FLASFRGHVA---AVYQVAW--SADSRLLVSGSKDSTLKVWDV  438 (480)
T ss_pred             hhheeeEEECCCccEEEEeecccceeeeeCCCcc---hhhhhhhccc---eeEEEEe--ccCccEEEEcCCCceEEEEEe
Confidence            999999999999997666542     66666554   4666777754   2222222  3344444455444443     


Q ss_pred             --------------CceeeEEecCCCEEEEeec
Q 004217          305 --------------PFLRPSFVRDDERISLQHT  323 (767)
Q Consensus       305 --------------pil~psFSpDg~rIva~~~  323 (767)
                                    .++.+-|+|||.+++.++.
T Consensus       439 ~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggk  471 (480)
T KOG0271|consen  439 RTKKLKQDLPGHADEVFAVDWSPDGQRVASGGK  471 (480)
T ss_pred             eeeeecccCCCCCceEEEEEecCCCceeecCCC
Confidence                          4556678899988886433

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=6.1e-24  Score=245.30  Aligned_cols=212  Identities=16%  Similarity=0.185  Sum_probs=167.9

Q ss_pred             CCCcceecccccccccCCCccCcceeecccccceecCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCC
Q 004217           32 NSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPP  107 (767)
Q Consensus        32 ~sk~rnVf~~~~kre~~~~~~~~sk~~wd~~~~~~~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~  107 (767)
                      -++|||+|+...  +.+|.+.+...+.|+.....++..+.++  .+.-.     .|+.++.|++|+....    .+.+|.
T Consensus         4 ~~~~~~~~~~~~--~~~y~diri~~~~~~s~~ia~n~~~~A~--~w~~~-----gGG~~gvI~L~~~~r~~~v~~L~gH~   74 (568)
T PTZ00420          4 VPLIKNLYPDPS--NNLFDDLRICSRVIDSCGIACSSGFVAV--PWEVE-----GGGLIGAIRLENQMRKPPVIKLKGHT   74 (568)
T ss_pred             cchhhhcCCchh--hCeeccEEccccccCceeEeeCCCeEEE--EEEcC-----CCCceeEEEeeecCCCceEEEEcCCC
Confidence            389999999754  5668899988888988776666444222  11111     2556788999987654    478999


Q ss_pred             CCeEEEEECCC-CCeEEEEeCCCeEEEEECCCCe--------EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEE
Q 004217          108 RSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGS--------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN  178 (767)
Q Consensus       108 ~sVtsVaFSpD-G~~LASgs~DGtVrVWDl~tg~--------~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWD  178 (767)
                      +.|.+++|+|+ +.+|++|+.|++|+|||+.++.        .+..+.+|...|.+++|+|.+..++++++.|++|+|||
T Consensus        75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWD  154 (568)
T PTZ00420         75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWD  154 (568)
T ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEE
Confidence            99999999996 8899999999999999997642        34567899999999999994445678999999999999


Q ss_pred             CCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEE-----EEEccCCCeEEE
Q 004217          179 ASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRA-----VHFHPHAAPLLL  252 (767)
Q Consensus       179 l~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~Vts-----VaFSPDG~~Lla  252 (767)
                      +++++.+..+.+...|.+++|+|+|.+|++++.++ |+|||+++++.+.   .+.+|.+.+..     ..|++++.+|++
T Consensus       155 l~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~---tl~gH~g~~~s~~v~~~~fs~d~~~IlT  231 (568)
T PTZ00420        155 IENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS---SFHIHDGGKNTKNIWIDGLGGDDNYILS  231 (568)
T ss_pred             CCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE---EEecccCCceeEEEEeeeEcCCCCEEEE
Confidence            99998887777788999999999999999988555 9999999987654   56778765433     345688888887


Q ss_pred             EEe
Q 004217          253 TAE  255 (767)
Q Consensus       253 Sgs  255 (767)
                      ++.
T Consensus       232 tG~  234 (568)
T PTZ00420        232 TGF  234 (568)
T ss_pred             EEc
Confidence            763

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.92  E-value=1.6e-24  Score=246.83  Aligned_cols=186  Identities=23%  Similarity=0.300  Sum_probs=171.0

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      +.-..++.+.++|+++++|.++|+|.+.+.    .++||..+|+++.|+|.|-++||++.|++.++|.....++++.|.+
T Consensus       454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifag  533 (707)
T KOG0263|consen  454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAG  533 (707)
T ss_pred             eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcc
Confidence            333567789999999999999999999986    4779999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccc
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET  225 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~  225 (767)
                      |-..|.|+.||| +.+++++||.|.+||+||+.+|..++.+ +|.++|.+++|+|+|++|++|+.++ |++||+.+++.+
T Consensus       534 hlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v  612 (707)
T KOG0263|consen  534 HLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV  612 (707)
T ss_pred             cccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch
Confidence            999999999999 9999999999999999999999999996 5999999999999999999999777 999999999876


Q ss_pred             cCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004217          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (767)
Q Consensus       226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s  261 (767)
                      .   .+.+|.+.|+++.||.||..|++++.     +||+..
T Consensus       613 ~---~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  613 K---QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             h---hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            6   78899999999999999997777665     666553

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.92  E-value=1.5e-24  Score=247.04  Aligned_cols=236  Identities=21%  Similarity=0.274  Sum_probs=200.9

Q ss_pred             CCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----------------------------------CCCCCCCCeEE
Q 004217           68 GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC-----------------------------------PLSPPPRSTIA  112 (767)
Q Consensus        68 ~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----------------------------------~L~gH~~sVts  112 (767)
                      ......+..++++...|+.|-.|..|++|.+...                                   ++.+|.++|..
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg  456 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG  456 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence            3345788889999999999999999999998620                                   25599999999


Q ss_pred             EEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCC
Q 004217          113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFY  191 (767)
Q Consensus       113 VaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~  191 (767)
                      +.|+||.++|++|+.|++||+|.+.+..++..++||..+|+.++|+| .+.+|+|++.|++.++|......+.+.+ +|.
T Consensus       457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifaghl  535 (707)
T KOG0263|consen  457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFAGHL  535 (707)
T ss_pred             eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhhcccc
Confidence            99999999999999999999999999999999999999999999999 8999999999999999999998888885 599


Q ss_pred             CCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcc
Q 004217          192 RPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESS  265 (767)
Q Consensus       192 ~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~  265 (767)
                      ..|.|+.|||+..|+++||.|+ |++||+.++..++   .+.+|.++|.+|+|||+|++|++++.     +||+..+...
T Consensus       536 sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR---iF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v  612 (707)
T KOG0263|consen  536 SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR---IFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV  612 (707)
T ss_pred             cccceEEECCcccccccCCCCceEEEEEcCCCcEEE---EecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch
Confidence            9999999999999999999777 9999999999766   88999999999999999998887765     6666644432


Q ss_pred             eeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeee
Q 004217          266 LTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLL  345 (767)
Q Consensus       266 ~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~  345 (767)
                      ..+.   ||                            ..-+....||.||..+++                 ++..+.+.
T Consensus       613 ~~l~---~H----------------------------t~ti~SlsFS~dg~vLas-----------------gg~DnsV~  644 (707)
T KOG0263|consen  613 KQLK---GH----------------------------TGTIYSLSFSRDGNVLAS-----------------GGADNSVR  644 (707)
T ss_pred             hhhh---cc----------------------------cCceeEEEEecCCCEEEe-----------------cCCCCeEE
Confidence            2222   22                            222336789999999987                 34556788


Q ss_pred             eccCCCCcee
Q 004217          346 TYSTPSGQYE  355 (767)
Q Consensus       346 ~~~~~~~q~~  355 (767)
                      +||......+
T Consensus       645 lWD~~~~~~~  654 (707)
T KOG0263|consen  645 LWDLTKVIEL  654 (707)
T ss_pred             EEEchhhccc
Confidence            8988765555

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.92  E-value=1.9e-23  Score=215.27  Aligned_cols=242  Identities=17%  Similarity=0.168  Sum_probs=190.4

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCC
Q 004217           79 DARRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~---------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~  149 (767)
                      .+...+++.+.|+++.+|++...         .+.||...|..++.++||++.++++.|+++++||+.+++..+.|.||+
T Consensus        26 ~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~  105 (315)
T KOG0279|consen   26 KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHT  105 (315)
T ss_pred             CCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecC
Confidence            46888999999999999998753         478999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec--CCCCeEEEEEcCC--CCEEEEEECCc-EEEEEcCCCcc
Q 004217          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--FYRPIASIAFHAS--GELLAVASGHK-LYIWRYNMREE  224 (767)
Q Consensus       150 ~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~--h~~~VtsVafSPd--G~~LAsgSdd~-V~VWDl~t~~~  224 (767)
                      ..|.+++|++ |.+.++||+.|++|++||+..........  +...|+|+.|+|+  ..+|++++.|+ |++||+++.+.
T Consensus       106 ~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l  184 (315)
T KOG0279|consen  106 KDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL  184 (315)
T ss_pred             CceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence            9999999999 99999999999999999998665544443  3789999999999  56899999777 99999999886


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCcc------------CCCCeEEEecC
Q 004217          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR------------YPPPVICMAGA  287 (767)
Q Consensus       225 ~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~------------~p~~~v~l~~~  287 (767)
                      ..   .+.+|...++.+++||||...+.+++     .||++..+....+....-...            ...+.+.+|+.
T Consensus       185 ~~---~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl  261 (315)
T KOG0279|consen  185 RT---TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDL  261 (315)
T ss_pred             hh---ccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEec
Confidence            55   78899999999999999995555444     999997776444432211100            12345677776


Q ss_pred             CCCCCCce---e-ec--cCCCCCCceeeEEecCCCEEEEeecC
Q 004217          288 HSSSHPGL---A-EE--VPLITPPFLRPSFVRDDERISLQHTE  324 (767)
Q Consensus       288 ~Ssd~~~L---~-sg--~~~~slpil~psFSpDg~rIva~~~~  324 (767)
                      .+.....-   . .+  .......++..+|++||..+..+-.+
T Consensus       262 ~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td  304 (315)
T KOG0279|consen  262 ESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD  304 (315)
T ss_pred             cchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecC
Confidence            55432111   1 11  11123345689999999999984443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.92  E-value=1.7e-23  Score=215.63  Aligned_cols=228  Identities=19%  Similarity=0.197  Sum_probs=183.8

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC--
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH--  148 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH--  148 (767)
                      ++.+.++.+.++++.|+++++||+.++    +|.+|...|.+++|++|.+.|++|+.|.+|++||+... +..++..+  
T Consensus        69 v~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~  147 (315)
T KOG0279|consen   69 VVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSH  147 (315)
T ss_pred             eEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCC
Confidence            556679999999999999999999986    58899999999999999999999999999999998754 44444333  


Q ss_pred             CCCcEEEEEccCC-CcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccc
Q 004217          149 RRTPWVVRFHPLN-PTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET  225 (767)
Q Consensus       149 ~~~V~sLafsP~d-g~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~  225 (767)
                      ++.|.+++|+|.. ..+|++++.|++|++||+++.+.... ++|.+.++.+++||||.++++|+.++ +.+||++.++.+
T Consensus       148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l  227 (315)
T KOG0279|consen  148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL  227 (315)
T ss_pred             cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee
Confidence            7899999999932 67999999999999999999888777 56999999999999999999999666 999999998864


Q ss_pred             cCCeEEecCCCCeEEEEEccCCCeEEEEE----eeCCcCCCCcceeEee-cCCCccCCCCeEEEecCCCCCCCceeeccC
Q 004217          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTA----EVNDLDSSESSLTLAT-SPGYWRYPPPVICMAGAHSSSHPGLAEEVP  300 (767)
Q Consensus       226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSg----svwdl~s~~~~~~l~t-~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~  300 (767)
                      .    ...|...|.+++|+|+-.+|.++.    .+||++.......+.. ..|.........++....+.|..+|..|..
T Consensus       228 y----sl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t  303 (315)
T KOG0279|consen  228 Y----SLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT  303 (315)
T ss_pred             E----eccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec
Confidence            4    678899999999999988766543    3999987665433321 112211223446666666888888888866


Q ss_pred             CCCCCce
Q 004217          301 LITPPFL  307 (767)
Q Consensus       301 ~~slpil  307 (767)
                      +.-++.|
T Consensus       304 d~~irv~  310 (315)
T KOG0279|consen  304 DNVIRVW  310 (315)
T ss_pred             CCcEEEE
Confidence            6555555

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.91  E-value=1.4e-22  Score=230.43  Aligned_cols=193  Identities=29%  Similarity=0.409  Sum_probs=167.3

Q ss_pred             cceEEEEEEcCCCEEEEEeCCCeEEEEeCC------CCCCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEEC-CCCeEE
Q 004217           70 FSQIFEAGRDARRGLASWVEAESLHHLRPK------YCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC-QTGSCL  142 (767)
Q Consensus        70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~------t~~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl-~tg~~l  142 (767)
                      .+..++.++.+|..+++++.++.+++|+..      ...+.+|...|.+++|+||+++|++++.|++|+|||+ ..+.++
T Consensus       160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~  239 (456)
T KOG0266|consen  160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNL  239 (456)
T ss_pred             CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEE
Confidence            447778889999999999999999999993      3356799999999999999999999999999999999 556899


Q ss_pred             EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcC
Q 004217          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYN  220 (767)
Q Consensus       143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~  220 (767)
                      +++++|...|++++|+| .++++++|+.|++|+|||+++++++..+. |...|++++|+++|++|++++.|+ |+|||+.
T Consensus       240 ~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~  318 (456)
T KOG0266|consen  240 KTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE  318 (456)
T ss_pred             EEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECC
Confidence            99999999999999999 66999999999999999999999999875 888999999999999999998666 9999999


Q ss_pred             CCccccCCeEEecCCC--CeEEEEEccCCCeEEEEEe-----eCCcCCCCc
Q 004217          221 MREETSSPRIVLRTRR--SLRAVHFHPHAAPLLLTAE-----VNDLDSSES  264 (767)
Q Consensus       221 t~~~~~~~~~l~~h~~--~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~  264 (767)
                      ++... ....+..+..  .+++++|+|++.++++...     +|++.....
T Consensus       319 ~~~~~-~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~  368 (456)
T KOG0266|consen  319 TGSKL-CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS  368 (456)
T ss_pred             CCcee-eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc
Confidence            98832 0123444433  5999999999999888765     666665444

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.90  E-value=4.6e-23  Score=220.65  Aligned_cols=199  Identities=19%  Similarity=0.282  Sum_probs=173.6

Q ss_pred             Ccceeeccccccee-----cCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---CCCCCC-CCeEEEEECCCCCeEE
Q 004217           53 HSSKRLLGETARKC-----SGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC---PLSPPP-RSTIAAAFSPDGKTLA  123 (767)
Q Consensus        53 ~~sk~~wd~~~~~~-----~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---~L~gH~-~sVtsVaFSpDG~~LA  123 (767)
                      ...-.+|....+..     ..+..+..+..+.++..+++++.+|.|++|+....   .+..|. ..|++++|||+...++
T Consensus       117 SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~  196 (464)
T KOG0284|consen  117 SGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFL  196 (464)
T ss_pred             cccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeE
Confidence            34455666543221     13445778888999999999999999999999865   344555 9999999999999999


Q ss_pred             EEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCC
Q 004217          124 STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHAS  202 (767)
Q Consensus       124 Sgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPd  202 (767)
                      +|++|++|+|||....+....|.||.-.|.+++||| ...++++++.|..|++||.++++|+.++ .|+..|..+.|+|+
T Consensus       197 t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n  275 (464)
T KOG0284|consen  197 TCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPN  275 (464)
T ss_pred             EecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCC
Confidence            999999999999999888889999999999999999 8899999999999999999999999985 58999999999999


Q ss_pred             CCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          203 GELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       203 G~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +++|++++.|. ++++|+++.+++.   .+.+|+..|+++.|+|-..-|+++++
T Consensus       276 ~N~Llt~skD~~~kv~DiR~mkEl~---~~r~Hkkdv~~~~WhP~~~~lftsgg  326 (464)
T KOG0284|consen  276 GNWLLTGSKDQSCKVFDIRTMKELF---TYRGHKKDVTSLTWHPLNESLFTSGG  326 (464)
T ss_pred             CCeeEEccCCceEEEEehhHhHHHH---Hhhcchhhheeeccccccccceeecc
Confidence            99999999877 9999999777655   78899999999999998887888765

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.90  E-value=5.8e-22  Score=205.29  Aligned_cols=226  Identities=19%  Similarity=0.196  Sum_probs=190.7

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC  141 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~  141 (767)
                      +...|+++.+..++.|.-|+...+|++.+.          ++.+|++-+.|+.|-.| .+|++++.|.++-+||+++|+.
T Consensus       100 VMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~  178 (343)
T KOG0286|consen  100 VMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQ  178 (343)
T ss_pred             EEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceE
Confidence            556678899999999999999999999854          48899999999999985 5788999999999999999999


Q ss_pred             EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEc
Q 004217          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRY  219 (767)
Q Consensus       142 l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl  219 (767)
                      +..|.||.+.|.+++++|.+.+.|+||+-|++.+|||++.+.+++.|. |...|++++|.|+|.-+++|++|. +++||+
T Consensus       179 ~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDl  258 (343)
T KOG0286|consen  179 TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDL  258 (343)
T ss_pred             EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEee
Confidence            999999999999999999899999999999999999999999999964 999999999999999999999887 999999


Q ss_pred             CCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCc
Q 004217          220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPG  294 (767)
Q Consensus       220 ~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~  294 (767)
                      +...++. ......-..+|++++||..|++|++...     +||.-.++....+.   ||.+   ++-++..  ++|...
T Consensus       259 RaD~~~a-~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~---GHeN---RvScl~~--s~DG~a  329 (343)
T KOG0286|consen  259 RADQELA-VYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA---GHEN---RVSCLGV--SPDGMA  329 (343)
T ss_pred             cCCcEEe-eeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee---ccCC---eeEEEEE--CCCCcE
Confidence            9987765 1111222568999999999998777543     78777666555554   5532   3344444  778888


Q ss_pred             eeeccCCCCCCce
Q 004217          295 LAEEVPLITPPFL  307 (767)
Q Consensus       295 L~sg~~~~slpil  307 (767)
                      +.+|+.+..+++|
T Consensus       330 v~TgSWDs~lriW  342 (343)
T KOG0286|consen  330 VATGSWDSTLRIW  342 (343)
T ss_pred             EEecchhHheeec
Confidence            9999888877776

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.89  E-value=1.1e-21  Score=199.66  Aligned_cols=256  Identities=19%  Similarity=0.217  Sum_probs=200.1

Q ss_pred             CcceeecccccceecC-----CcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCe
Q 004217           53 HSSKRLLGETARKCSG-----SFSQIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKT  121 (767)
Q Consensus        53 ~~sk~~wd~~~~~~~~-----s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSpDG~~  121 (767)
                      ....++|......|..     +..+-...+..+++.|+.+. ...||+||+.+.      .+.+|+..|.++.|..||++
T Consensus        19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrW   97 (311)
T KOG0315|consen   19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRW   97 (311)
T ss_pred             cceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeE
Confidence            3457888877666652     34466677778888888775 567999999886      37799999999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee--cCCCCeEEEEE
Q 004217          122 LASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAF  199 (767)
Q Consensus       122 LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l--~h~~~VtsVaf  199 (767)
                      +++|++||++||||++...+.+.|+ |..+|+++..+| +...|++|..+|.|++||+....+...+  +....|.++..
T Consensus        98 MyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v  175 (311)
T KOG0315|consen   98 MYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTV  175 (311)
T ss_pred             EEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEE
Confidence            9999999999999999977777765 779999999999 9999999999999999999998777764  35578999999


Q ss_pred             cCCCCEEEEEECCc-EEEEEcCCCc---cccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEee
Q 004217          200 HASGELLAVASGHK-LYIWRYNMRE---ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLAT  270 (767)
Q Consensus       200 SPdG~~LAsgSdd~-V~VWDl~t~~---~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t  270 (767)
                      .|||.+|+.+.+.+ +++|++-...   ++.+...+..|...+..+.+|||+++|+++++     +|+++..  ......
T Consensus       176 ~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~  253 (311)
T KOG0315|consen  176 MPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELV  253 (311)
T ss_pred             cCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEE
Confidence            99999999888655 9999987643   23344567789999999999999998888765     6665532  122222


Q ss_pred             cCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCC
Q 004217          271 SPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTP  350 (767)
Q Consensus       271 ~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~  350 (767)
                      +.|+                            ..-.|-.+||.||++|+..                 ++......|+.+
T Consensus       254 l~gh----------------------------~rWvWdc~FS~dg~YlvTa-----------------ssd~~~rlW~~~  288 (311)
T KOG0315|consen  254 LTGH----------------------------QRWVWDCAFSADGEYLVTA-----------------SSDHTARLWDLS  288 (311)
T ss_pred             eecC----------------------------CceEEeeeeccCccEEEec-----------------CCCCceeecccc
Confidence            2333                            1234458999999999972                 233456778888


Q ss_pred             CCceeeee
Q 004217          351 SGQYELVL  358 (767)
Q Consensus       351 ~~q~~~~~  358 (767)
                      +++....+
T Consensus       289 ~~k~v~qy  296 (311)
T KOG0315|consen  289 AGKEVRQY  296 (311)
T ss_pred             cCceeeec
Confidence            77765555

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.89  E-value=1.1e-21  Score=221.96  Aligned_cols=241  Identities=18%  Similarity=0.235  Sum_probs=191.6

Q ss_pred             eEEEEEEcCCCEEEEEeC-CCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217           72 QIFEAGRDARRGLASWVE-AESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~-DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~  146 (767)
                      ...+++...|..|+-|+. -|.+.+|+..+.    +.++|...++++++||||++||+|+.||.|||||..+|-|+.+|.
T Consensus       310 I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt  389 (893)
T KOG0291|consen  310 ILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT  389 (893)
T ss_pred             eeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec
Confidence            445566677899988764 478999998876    567999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCC--CeEEEEEcCCCCEEEEEECCc--EEEEEcCCC
Q 004217          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR--PIASIAFHASGELLAVASGHK--LYIWRYNMR  222 (767)
Q Consensus       147 gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~--~VtsVafSPdG~~LAsgSdd~--V~VWDl~t~  222 (767)
                      .|+..|+.+.|+. .++.+++.+.||+|+.||+...++.+++....  ...|++.+|.|.++..|+.|.  |+||++.++
T Consensus       390 eHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG  468 (893)
T KOG0291|consen  390 EHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG  468 (893)
T ss_pred             cCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC
Confidence            9999999999999 99999999999999999999999999987554  457889999999999999776  999999999


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCC
Q 004217          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLI  302 (767)
Q Consensus       223 ~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~  302 (767)
                      +.+.   .+.+|.++|.+++|+|++..|+ +++ ||-                     .+.+|+.-++...   .+.-..
T Consensus       469 qllD---iLsGHEgPVs~l~f~~~~~~La-S~S-WDk---------------------TVRiW~if~s~~~---vEtl~i  519 (893)
T KOG0291|consen  469 QLLD---ILSGHEGPVSGLSFSPDGSLLA-SGS-WDK---------------------TVRIWDIFSSSGT---VETLEI  519 (893)
T ss_pred             eeee---hhcCCCCcceeeEEccccCeEE-ecc-ccc---------------------eEEEEEeeccCce---eeeEee
Confidence            9876   8899999999999999999544 443 221                     1222322111100   011112


Q ss_pred             CCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217          303 TPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS  359 (767)
Q Consensus       303 slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~  359 (767)
                      ..-.+.++|+|||+.|.+.                 ....++.|||...+..-..|-
T Consensus       520 ~sdvl~vsfrPdG~elaVa-----------------TldgqItf~d~~~~~q~~~Id  559 (893)
T KOG0291|consen  520 RSDVLAVSFRPDGKELAVA-----------------TLDGQITFFDIKEAVQVGSID  559 (893)
T ss_pred             ccceeEEEEcCCCCeEEEE-----------------EecceEEEEEhhhceeecccc
Confidence            3345578999999999982                 223468899987766665554

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.88  E-value=1.7e-21  Score=205.84  Aligned_cols=247  Identities=16%  Similarity=0.195  Sum_probs=198.1

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ..++++.....++++|+.|++|++||+.+++    +.||...|..+++|+.-.+|++++.|+.|+-||++..+.++.+.|
T Consensus       154 Vr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhG  233 (460)
T KOG0285|consen  154 VRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHG  233 (460)
T ss_pred             EEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhcc
Confidence            7888998999999999999999999999985    569999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccc
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET  225 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~  225 (767)
                      |-..|++++.+| .-+.|++|+.|.++++||+++...+..+. |..+|.++.+.|-...+++|+.|. |++||++.++..
T Consensus       234 HlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~  312 (460)
T KOG0285|consen  234 HLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM  312 (460)
T ss_pred             ccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee
Confidence            999999999999 88999999999999999999999988865 999999999999888899999665 999999999864


Q ss_pred             cCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcc--eeEeecCCCcc----------------CCCCeEEEecC
Q 004217          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESS--LTLATSPGYWR----------------YPPPVICMAGA  287 (767)
Q Consensus       226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~--~~l~t~sG~~~----------------~p~~~v~l~~~  287 (767)
                      .   .+..|...|++++.+|... ++++++-++++.++.+  ..+...+||..                -....+++|+-
T Consensus       313 ~---tlt~hkksvral~lhP~e~-~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdw  388 (460)
T KOG0285|consen  313 I---TLTHHKKSVRALCLHPKEN-LFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDW  388 (460)
T ss_pred             E---eeecccceeeEEecCCchh-hhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEec
Confidence            4   7788999999999999987 5555554444433322  11111222211                12356777776


Q ss_pred             CCCCCCcee-----eccCCCCCCceeeEEecCCCEEEEeec
Q 004217          288 HSSSHPGLA-----EEVPLITPPFLRPSFVRDDERISLQHT  323 (767)
Q Consensus       288 ~Ssd~~~L~-----sg~~~~slpil~psFSpDg~rIva~~~  323 (767)
                      .++-.....     -|+-.....++..+|...+.+|+...+
T Consensus       389 ksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ea  429 (460)
T KOG0285|consen  389 KSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEA  429 (460)
T ss_pred             CcCcccccccccccCCccccccceeEEeecccCceEEeccC
Confidence            665443322     233333445677889888999887433

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.88  E-value=2.9e-21  Score=200.75  Aligned_cols=201  Identities=15%  Similarity=0.162  Sum_probs=176.4

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~  146 (767)
                      .....+..++..+++++.|..|.+|+....     .+++|++.|..+.|.+|++.|++++.|.+|+.||.++|++++.++
T Consensus        50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k  129 (338)
T KOG0265|consen   50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK  129 (338)
T ss_pred             EEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc
Confidence            445677889999999999999999997543     688999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCccc
Q 004217          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREET  225 (767)
Q Consensus       147 gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~  225 (767)
                      +|..-|..+.-+..+..++.|++.|+++++||+++..+++++..+..++++.|..++..+.+|+ ++.|++||++..+..
T Consensus       130 ~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~  209 (338)
T KOG0265|consen  130 GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL  209 (338)
T ss_pred             cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcce
Confidence            9999999988555466789999999999999999999999999999999999999999999998 556999999998865


Q ss_pred             cCCeEEecCCCCeEEEEEccCCCeEEEEE-----eeCCcCCCCccee-EeecCCCc
Q 004217          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTA-----EVNDLDSSESSLT-LATSPGYW  275 (767)
Q Consensus       226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSg-----svwdl~s~~~~~~-l~t~sG~~  275 (767)
                      .   .+.+|.+.|+.+..+|+|.++++-+     .+||++....... +..+.|+.
T Consensus       210 ~---~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~  262 (338)
T KOG0265|consen  210 Y---TLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI  262 (338)
T ss_pred             E---EeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch
Confidence            5   8899999999999999999887633     3999986555433 55555553

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.87  E-value=7.7e-21  Score=197.00  Aligned_cols=171  Identities=20%  Similarity=0.293  Sum_probs=156.7

Q ss_pred             EEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217           74 FEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (767)
Q Consensus        74 ~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH  148 (767)
                      +..+.+ ...|++++.|.+.-+||+++++    +.+|.+.|.+++++| +++.+++|+-|+..+|||++.+.+++.|.+|
T Consensus       150 cC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh  228 (343)
T KOG0286|consen  150 CCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH  228 (343)
T ss_pred             EEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccc
Confidence            344444 7788999999999999999983    789999999999999 9999999999999999999999999999999


Q ss_pred             CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCC---CCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCcc
Q 004217          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGELLAVASGHK-LYIWRYNMREE  224 (767)
Q Consensus       149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~---~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~  224 (767)
                      ...|++++|+| ++.-|++|+.|++.++||++..+.+..+.+.   ..|++++|+-.|++|++|.+|. +.+||.-.++.
T Consensus       229 esDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~  307 (343)
T KOG0286|consen  229 ESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGER  307 (343)
T ss_pred             ccccceEEEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccce
Confidence            99999999999 9999999999999999999999999887754   5789999999999999998666 99999988876


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCe
Q 004217          225 TSSPRIVLRTRRSLRAVHFHPHAAP  249 (767)
Q Consensus       225 ~~~~~~l~~h~~~VtsVaFSPDG~~  249 (767)
                      ..   .+.+|.+.|.++..+|||.-
T Consensus       308 vg---~L~GHeNRvScl~~s~DG~a  329 (343)
T KOG0286|consen  308 VG---VLAGHENRVSCLGVSPDGMA  329 (343)
T ss_pred             EE---EeeccCCeeEEEEECCCCcE
Confidence            55   78899999999999999973

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1.3e-20  Score=205.89  Aligned_cols=220  Identities=22%  Similarity=0.284  Sum_probs=182.2

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L~  146 (767)
                      +..+.++.+|+.++.|.+.|.|+++|.++.    .+.+|+.+|..+.|+| |++.|++|++|+.+++||+.+......+.
T Consensus        71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~  150 (487)
T KOG0310|consen   71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS  150 (487)
T ss_pred             eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec
Confidence            344557889999999999999999997764    5889999999999999 67788999999999999999998766899


Q ss_pred             cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC-eEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccc
Q 004217          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREET  225 (767)
Q Consensus       147 gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg-~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~  225 (767)
                      +|++.|.+.+|+|.++.+++||+.||+|++||+++. ..+.++.|..+|..+.|-|.|..|++++++.|+|||+-++...
T Consensus       151 ~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql  230 (487)
T KOG0310|consen  151 GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL  230 (487)
T ss_pred             CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence            999999999999988889999999999999999987 7888899999999999999999999999999999999977653


Q ss_pred             cCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCC
Q 004217          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPP  305 (767)
Q Consensus       226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slp  305 (767)
                      .  .....|...|+|+.+..++..|++++=+-.++       +...+.|     ..+.               ...++.|
T Consensus       231 l--~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VK-------Vfd~t~~-----Kvv~---------------s~~~~~p  281 (487)
T KOG0310|consen  231 L--TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVK-------VFDTTNY-----KVVH---------------SWKYPGP  281 (487)
T ss_pred             h--hhhhcccceEEEEEeecCCceEeecccccceE-------EEEccce-----EEEE---------------eeecccc
Confidence            2  34555999999999999998887766322222       1111111     1122               1235668


Q ss_pred             ceeeEEecCCCEEEE
Q 004217          306 FLRPSFVRDDERISL  320 (767)
Q Consensus       306 il~psFSpDg~rIva  320 (767)
                      ++..+.+||+..+++
T Consensus       282 vLsiavs~dd~t~vi  296 (487)
T KOG0310|consen  282 VLSIAVSPDDQTVVI  296 (487)
T ss_pred             eeeEEecCCCceEEE
Confidence            888889999999988

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.87  E-value=2.8e-20  Score=211.64  Aligned_cols=182  Identities=24%  Similarity=0.334  Sum_probs=157.3

Q ss_pred             cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEE
Q 004217           70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV  144 (767)
Q Consensus        70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~  144 (767)
                      .....++++.++..+++++.|++|++||.+..     .+.+|...|++++|+|+|+++++|+.|++|+|||+++++++..
T Consensus       204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~  283 (456)
T KOG0266|consen  204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK  283 (456)
T ss_pred             cceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe
Confidence            34667788899999999999999999999433     5789999999999999999999999999999999999999999


Q ss_pred             EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe--EEEeec-CCC--CeEEEEEcCCCCEEEEEECCc-EEEEE
Q 004217          145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE--CIGSRD-FYR--PIASIAFHASGELLAVASGHK-LYIWR  218 (767)
Q Consensus       145 L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~--~i~~l~-h~~--~VtsVafSPdG~~LAsgSdd~-V~VWD  218 (767)
                      +.+|.+.|.+++|++ ++++|++++.|+.|++||+.++.  +...+. +..  .++++.|+|++.+|+++..|+ +++||
T Consensus       284 l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~  362 (456)
T KOG0266|consen  284 LKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWD  362 (456)
T ss_pred             eeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEE
Confidence            999999999999999 99999999999999999999999  455543 322  689999999999999999886 99999


Q ss_pred             cCCCccccCCeEEecCCC---CeEEEEEccCCCeEEEEEe
Q 004217          219 YNMREETSSPRIVLRTRR---SLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       219 l~t~~~~~~~~~l~~h~~---~VtsVaFSPDG~~LlaSgs  255 (767)
                      +.......   ...+|..   .+.+..+++.++++++++.
T Consensus       363 l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~sg~~  399 (456)
T KOG0266|consen  363 LRSGKSVG---TYTGHSNLVRCIFSPTLSTGGKLIYSGSE  399 (456)
T ss_pred             ccCCccee---eecccCCcceeEecccccCCCCeEEEEeC
Confidence            99887655   5666655   3455566778887766654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.87  E-value=2.3e-19  Score=180.29  Aligned_cols=188  Identities=23%  Similarity=0.371  Sum_probs=163.7

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ...+.+.+++..+++++.++.|++|+....    .+..|...+..+.|++++++|++++.|+.|++||+.+++.+..+..
T Consensus        12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~   91 (289)
T cd00200          12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTG   91 (289)
T ss_pred             EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEec
Confidence            556677788899999999999999999875    4668999999999999999999999999999999999888889999


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCccc
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREET  225 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~  225 (767)
                      |...+.++.|++ +++++++++.|+.|++||+.+++....+. |...+.+++|+|++.++++++ ++.|++||+++.+..
T Consensus        92 ~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~  170 (289)
T cd00200          92 HTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV  170 (289)
T ss_pred             cCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccc
Confidence            999999999999 78888888889999999999888887765 788999999999999999998 556999999877654


Q ss_pred             cCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCC
Q 004217          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE  263 (767)
Q Consensus       226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~  263 (767)
                      .   .+..|...|.++.|+|+++.+++++.     +|+++...
T Consensus       171 ~---~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~  210 (289)
T cd00200         171 A---TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK  210 (289)
T ss_pred             e---eEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence            4   56678889999999999987877764     66666433

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.86  E-value=6.9e-20  Score=207.63  Aligned_cols=256  Identities=18%  Similarity=0.201  Sum_probs=196.1

Q ss_pred             cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217           70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L  145 (767)
                      ....+++.+.+|+.+++|++|++|++||...+    ++..|+..|+.+.|+.+|+.|++.+-||+|+.||+...+..++|
T Consensus       351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTf  430 (893)
T KOG0291|consen  351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTF  430 (893)
T ss_pred             cceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeee
Confidence            44788889999999999999999999999985    68999999999999999999999999999999999999999999


Q ss_pred             ccCC-CCcEEEEEccCCCcEEEEEeCCC-eEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCC
Q 004217          146 HGHR-RTPWVVRFHPLNPTIIASGSLDH-EVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNM  221 (767)
Q Consensus       146 ~gH~-~~V~sLafsP~dg~lLaSgS~DG-tVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t  221 (767)
                      .... ....+++..| .+.+++.|+.|. .|.+|++++|+.+-.+ +|.++|.+++|+|+|..|++++.|+ |++||+-.
T Consensus       431 t~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~  509 (893)
T KOG0291|consen  431 TSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS  509 (893)
T ss_pred             cCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence            7644 3467889999 889999998886 5999999999999886 5999999999999999999999766 99999876


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCcee
Q 004217          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLA  296 (767)
Q Consensus       222 ~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~  296 (767)
                      .....   ....+...+..++|+|||+.++++.-     +||+....   .+.+..|.........       .+  ...
T Consensus       510 s~~~v---Etl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~---q~~~IdgrkD~~~gR~-------~~--D~~  574 (893)
T KOG0291|consen  510 SSGTV---ETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV---QVGSIDGRKDLSGGRK-------ET--DRI  574 (893)
T ss_pred             cCcee---eeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhce---eeccccchhhcccccc-------cc--cee
Confidence            54322   44567789999999999998887654     56555322   2223333322111100       00  111


Q ss_pred             eccCCCCCCce-eeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217          297 EEVPLITPPFL-RPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       297 sg~~~~slpil-~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                      +.........+ ..+||+||..|++++.                 +..+..|+.+++-.-+.+
T Consensus       575 ta~~sa~~K~Ftti~ySaDG~~IlAgG~-----------------sn~iCiY~v~~~vllkkf  620 (893)
T KOG0291|consen  575 TAENSAKGKTFTTICYSADGKCILAGGE-----------------SNSICIYDVPEGVLLKKF  620 (893)
T ss_pred             ehhhcccCCceEEEEEcCCCCEEEecCC-----------------cccEEEEECchhheeeeE
Confidence            11111222344 7999999999998322                 345677887776555544

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=6.9e-20  Score=209.84  Aligned_cols=352  Identities=20%  Similarity=0.189  Sum_probs=242.4

Q ss_pred             ceeecccccceec-----CCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEE
Q 004217           55 SKRLLGETARKCS-----GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLAST  125 (767)
Q Consensus        55 sk~~wd~~~~~~~-----~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASg  125 (767)
                      .-.+||-.-..+.     .+..+.-+.+...+..+++|+.|-+|++|+.++.    +|.||-+-|..+.|++.-.+|+|+
T Consensus        32 ~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSA  111 (1202)
T KOG0292|consen   32 VIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSA  111 (1202)
T ss_pred             eeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEc
Confidence            4556765433332     2344677888889999999999999999999886    588999999999999999999999


Q ss_pred             eCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe----------------------
Q 004217          126 HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE----------------------  183 (767)
Q Consensus       126 s~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~----------------------  183 (767)
                      |+|.+|+||+..+++++..+.||...|.|.+|+| ..++++|+|.|.+||+||+..-+                      
T Consensus       112 SDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dL  190 (1202)
T KOG0292|consen  112 SDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDL  190 (1202)
T ss_pred             cCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhh
Confidence            9999999999999999999999999999999999 89999999999999999985311                      


Q ss_pred             -----EEEe--e-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          184 -----CIGS--R-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       184 -----~i~~--l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                           .+..  + +|...|+-++|+|.-.+|++|+||+ |++|.+...+... .-...+|.+.|.++-|+|....+++.+
T Consensus       191 fg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWE-vDtcrgH~nnVssvlfhp~q~lIlSns  269 (1202)
T KOG0292|consen  191 FGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE-VDTCRGHYNNVSSVLFHPHQDLILSNS  269 (1202)
T ss_pred             cCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccccee-ehhhhcccCCcceEEecCccceeEecC
Confidence                 1111  1 4888999999999999999999998 9999998766443 446779999999999999999888776


Q ss_pred             e-----eCCcCCCCcceeEeecCCCcc----CCCCeEEEecCCCCCCC-ceeeccCCCCCCceeeEEecCCCEEEEeecC
Q 004217          255 E-----VNDLDSSESSLTLATSPGYWR----YPPPVICMAGAHSSSHP-GLAEEVPLITPPFLRPSFVRDDERISLQHTE  324 (767)
Q Consensus       255 s-----vwdl~s~~~~~~l~t~sG~~~----~p~~~v~l~~~~Ssd~~-~L~sg~~~~slpil~psFSpDg~rIva~~~~  324 (767)
                      +     +||+....+......-++.+-    .|.--++-+--+++--. .+..+.+...+..-..-|.. +++|+.....
T Consensus       270 EDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~  348 (1202)
T KOG0292|consen  270 EDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLR  348 (1202)
T ss_pred             CCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeecc
Confidence            6     888886555554433333211    01000000000000000 00001111111111122222 5555544333


Q ss_pred             CCCCCcccc-------------cccccCCceeeeeccCCCCceeeeeccCCCCCCCCCCCCCCccccccccccCCccccc
Q 004217          325 HDSGATRTQ-------------QSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAI  391 (767)
Q Consensus       325 ~d~Gs~~~~-------------~~~~ss~~~~l~~~~~~~~q~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (767)
                      ..-.+...+             .....+-++.+.-.+.+++.++++.-|.++....+..+......--..|.+++....+
T Consensus       349 t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl  428 (1202)
T KOG0292|consen  349 TQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVL  428 (1202)
T ss_pred             ccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEE
Confidence            322222222             2222333444444467899999999999988777767766666777789999999999


Q ss_pred             cc-ccccc----CCCCCCCCCCC
Q 004217          392 GA-VGTLD----GLPEERTNYLP  409 (767)
Q Consensus       392 ~~-~~~~~----~~~~~~~~~~~  409 (767)
                      ++ +++-.    .|-+.++.++|
T Consensus       429 ~k~~~~v~ik~l~N~vtkkl~~~  451 (1202)
T KOG0292|consen  429 DKSNEQVVIKNLKNKVTKKLLLP  451 (1202)
T ss_pred             EecCcceEEecccchhhhcccCc
Confidence            99 55544    34444444444

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.85  E-value=6.3e-20  Score=186.84  Aligned_cols=178  Identities=17%  Similarity=0.282  Sum_probs=152.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe--EEEEEccCCCCcE
Q 004217           80 ARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS--CLKVLHGHRRTPW  153 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~--~l~~L~gH~~~V~  153 (767)
                      ....|++.+.|.+||+|.+.++.    ++-..+.|+.+...||++.||+++. ..||+||+.+++  ++.+|.+|+..|.
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt   87 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT   87 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence            45678899999999999999873    4444567999999999999999887 489999999865  5889999999999


Q ss_pred             EEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEe
Q 004217          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVL  232 (767)
Q Consensus       154 sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~  232 (767)
                      ++.|.. +++++++|++||+++|||++...+.+.+.+..+|+++..+|+...|++|..++ |++||+.......  ..+.
T Consensus        88 aVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~--~liP  164 (311)
T KOG0315|consen   88 AVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH--ELIP  164 (311)
T ss_pred             EEEEee-cCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc--ccCC
Confidence            999999 99999999999999999999999999999999999999999999999998655 9999998875433  2233


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004217          233 RTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (767)
Q Consensus       233 ~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s  261 (767)
                      .....|.++...|||+.+++.-.     +|++-.
T Consensus       165 e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~  198 (311)
T KOG0315|consen  165 EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN  198 (311)
T ss_pred             CCCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence            44578999999999997766533     777764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.85  E-value=2.6e-19  Score=194.88  Aligned_cols=250  Identities=13%  Similarity=0.126  Sum_probs=203.0

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ....++++.+|..|++|+.||.+++|+....   .|..|+++|.++.|+.+|.+|++++.|+++.|||..+|.....|.-
T Consensus       237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~  316 (524)
T KOG0273|consen  237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF  316 (524)
T ss_pred             CcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee
Confidence            3778889899999999999999999999865   5779999999999999999999999999999999999999999998


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccc
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET  225 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~  225 (767)
                      |...-..|.|-.  ...|++++.|+.|+++.+....++.++ +|.+.|.++.|+|.|.+|+++++|+ ++||........
T Consensus       317 ~s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~  394 (524)
T KOG0273|consen  317 HSAPALDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV  394 (524)
T ss_pred             ccCCccceEEec--CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence            988878899964  678999999999999999988888774 6999999999999999999999877 999998877755


Q ss_pred             cCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCC
Q 004217          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPP  305 (767)
Q Consensus       226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slp  305 (767)
                      .   .+..|...|+.+.|+|+|..      .|+......  .+...      ....+.+|+..++...+....   ..-|
T Consensus       395 ~---~l~~Hskei~t~~wsp~g~v------~~n~~~~~~--l~sas------~dstV~lwdv~~gv~i~~f~k---H~~p  454 (524)
T KOG0273|consen  395 H---DLQAHSKEIYTIKWSPTGPV------TSNPNMNLM--LASAS------FDSTVKLWDVESGVPIHTLMK---HQEP  454 (524)
T ss_pred             h---hhhhhccceeeEeecCCCCc------cCCCcCCce--EEEee------cCCeEEEEEccCCceeEeecc---CCCc
Confidence            5   67889999999999998872      222221111  11100      123566777666665555433   4668


Q ss_pred             ceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217          306 FLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS  359 (767)
Q Consensus       306 il~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~  359 (767)
                      +..++|||||++++.                 ++....+..|+..+++..+.+.
T Consensus       455 VysvafS~~g~ylAs-----------------Gs~dg~V~iws~~~~~l~~s~~  491 (524)
T KOG0273|consen  455 VYSVAFSPNGRYLAS-----------------GSLDGCVHIWSTKTGKLVKSYQ  491 (524)
T ss_pred             eEEEEecCCCcEEEe-----------------cCCCCeeEeccccchheeEeec
Confidence            889999999999997                 3445567778887777776663

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=2.4e-20  Score=197.81  Aligned_cols=195  Identities=26%  Similarity=0.353  Sum_probs=174.1

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~  146 (767)
                      .--+++...|+.|++.+.|-.+++||..+.     .+.+|...|.+++|-|.|.+|++++.|.+|+.||+.+|-++.+|.
T Consensus       153 v~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~  232 (406)
T KOG0295|consen  153 VFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP  232 (406)
T ss_pred             eeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc
Confidence            445667778999999999999999999874     478999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCC---------------CCEEEEEE
Q 004217          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHAS---------------GELLAVAS  210 (767)
Q Consensus       147 gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPd---------------G~~LAsgS  210 (767)
                      +|...|..++.+. |+.++++++.|.+|++|-+.+++|...+ .|+.+|.+++|-|.               ++++++++
T Consensus       233 ~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S  311 (406)
T KOG0295|consen  233 GHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS  311 (406)
T ss_pred             CchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence            9999999999999 9999999999999999999999888775 48899999999773               25888898


Q ss_pred             CCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEee
Q 004217          211 GHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLAT  270 (767)
Q Consensus       211 dd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t  270 (767)
                      .|+ |++||+.++..+.   .+.+|.++|+.++|+|.|+||++.++     +||+....+...+..
T Consensus       312 rDktIk~wdv~tg~cL~---tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a  374 (406)
T KOG0295|consen  312 RDKTIKIWDVSTGMCLF---TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA  374 (406)
T ss_pred             ccceEEEEeccCCeEEE---EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC
Confidence            766 9999999998655   89999999999999999999998776     888887666555543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=5.8e-20  Score=194.95  Aligned_cols=181  Identities=17%  Similarity=0.258  Sum_probs=164.4

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~  146 (767)
                      ....+.+...+..|++++.|++|+.|+..++    ++.+|..-|..++.+.||.++|+|+.|.+|++|-+.++++...++
T Consensus       195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR  274 (406)
T KOG0295|consen  195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR  274 (406)
T ss_pred             ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh
Confidence            3666777788999999999999999999987    689999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEEEEccC--------------CCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEEC
Q 004217          147 GHRRTPWVVRFHPL--------------NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG  211 (767)
Q Consensus       147 gH~~~V~sLafsP~--------------dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSd  211 (767)
                      +|...|.+++|.|.              .+.++.+++.|++|++||+.++.|+.++ +|...|..++|+|.|+||+++.|
T Consensus       275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD  354 (406)
T KOG0295|consen  275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD  354 (406)
T ss_pred             ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEec
Confidence            99999999999882              2359999999999999999999999886 59999999999999999999998


Q ss_pred             Cc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          212 HK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       212 d~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      |+ +++||+++.++..   .+..|..-|++++|+.+-. ++++|+
T Consensus       355 Dktlrvwdl~~~~cmk---~~~ah~hfvt~lDfh~~~p-~VvTGs  395 (406)
T KOG0295|consen  355 DKTLRVWDLKNLQCMK---TLEAHEHFVTSLDFHKTAP-YVVTGS  395 (406)
T ss_pred             CCcEEEEEeccceeee---ccCCCcceeEEEecCCCCc-eEEecc
Confidence            88 9999999998755   6678999999999999888 455555

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.84  E-value=1.4e-18  Score=210.12  Aligned_cols=187  Identities=17%  Similarity=0.246  Sum_probs=157.0

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----C-------CCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCC
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----P-------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT  138 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~-------L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~t  138 (767)
                      ....+++..++..+++++.|++|++|+....    .       ...+...|.+++|++ ++++|++++.|++|+|||+.+
T Consensus       485 ~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~  564 (793)
T PLN00181        485 LVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR  564 (793)
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence            3666788889999999999999999997531    0       012346789999998 588999999999999999999


Q ss_pred             CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEc-CCCCEEEEEECCc-EEE
Q 004217          139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH-ASGELLAVASGHK-LYI  216 (767)
Q Consensus       139 g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafS-PdG~~LAsgSdd~-V~V  216 (767)
                      ++.+..+.+|.+.|++++|+|.++.+|++|+.|++|++||++++.++..+.+...+.++.|+ ++|.+|++|+.++ |++
T Consensus       565 ~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~i  644 (793)
T PLN00181        565 SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYY  644 (793)
T ss_pred             CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEE
Confidence            99999999999999999999767899999999999999999999998888777889999995 5789999999665 999


Q ss_pred             EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcC
Q 004217          217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLD  260 (767)
Q Consensus       217 WDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~  260 (767)
                      ||+++.+.  ....+.+|...|.++.|. ++.+|++++.     +||++
T Consensus       645 wD~~~~~~--~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        645 YDLRNPKL--PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             EECCCCCc--cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence            99987653  123567899999999997 6776776654     55554

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=2e-19  Score=206.97  Aligned_cols=188  Identities=20%  Similarity=0.242  Sum_probs=157.3

Q ss_pred             cceEEEEEEcCCCEEEEEeCCCeEEEEeCCC--------------------------------C----------------
Q 004217           70 FSQIFEAGRDARRGLASWVEAESLHHLRPKY--------------------------------C----------------  101 (767)
Q Consensus        70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t--------------------------------~----------------  101 (767)
                      ....++.++.+|++||++++|+.|++|.+..                                .                
T Consensus       268 gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~  347 (712)
T KOG0283|consen  268 GAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPC  347 (712)
T ss_pred             CcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCcc
Confidence            3477788999999999999999999998754                                0                


Q ss_pred             ----------------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEE
Q 004217          102 ----------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (767)
Q Consensus       102 ----------------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lL  165 (767)
                                      .+.||.+.|.+|.||.+ .+|++++.|.+||||++...+|+..|. |.+.|+||+|+|.|.++|
T Consensus       348 ~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryF  425 (712)
T KOG0283|consen  348 VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYF  425 (712)
T ss_pred             ccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcE
Confidence                            14589999999999975 589999999999999999999999996 999999999999999999


Q ss_pred             EEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEE------ecCCCCe
Q 004217          166 ASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV------LRTRRSL  238 (767)
Q Consensus       166 aSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l------~~h~~~V  238 (767)
                      +||+.|+.||||++...+.+.......-|++++|.|||++.++|+-++ +++|++...+......+.      ..|. .|
T Consensus       426 iSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rI  504 (712)
T KOG0283|consen  426 ISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RI  504 (712)
T ss_pred             eecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-ee
Confidence            999999999999999999888888889999999999999999999655 999999877654321111      1233 89


Q ss_pred             EEEEEccCCC-eEEEEEeeCCcC
Q 004217          239 RAVHFHPHAA-PLLLTAEVNDLD  260 (767)
Q Consensus       239 tsVaFSPDG~-~LlaSgsvwdl~  260 (767)
                      +.+.|.|... .+++|+.+-.++
T Consensus       505 TG~Q~~p~~~~~vLVTSnDSrIR  527 (712)
T KOG0283|consen  505 TGLQFFPGDPDEVLVTSNDSRIR  527 (712)
T ss_pred             eeeEecCCCCCeEEEecCCCceE
Confidence            9999998554 366665543333

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.84  E-value=6.7e-18  Score=185.79  Aligned_cols=265  Identities=15%  Similarity=0.159  Sum_probs=191.0

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCeEEEEeCC----CeEEEEECCCCeE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGD----HTVKIIDCQTGSC  141 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSpDG~~LASgs~D----GtVrVWDl~tg~~  141 (767)
                      ......+..|.++++|...|+||+||....      +++.-.++|.+++|+.|+++|+..++.    |.+.+||  +|..
T Consensus        62 vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~S  139 (603)
T KOG0318|consen   62 VTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNS  139 (603)
T ss_pred             eEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCc
Confidence            555667888999999999999999998763      456678899999999999999887653    3455565  6777


Q ss_pred             EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEc
Q 004217          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRY  219 (767)
Q Consensus       142 l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl  219 (767)
                      +..+.||...|+++.|-|...-.+++|+.|++|.+|+-.-.+-..++ .|..-|+++.|+|||.++++.+.|+ |.+||=
T Consensus       140 vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDG  219 (603)
T KOG0318|consen  140 VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDG  219 (603)
T ss_pred             cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcC
Confidence            88999999999999999977789999999999999987665555554 4888999999999999999888555 999999


Q ss_pred             CCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE-----eeCCcCCCCcceeEeecCCCcc------CCC---------
Q 004217          220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA-----EVNDLDSSESSLTLATSPGYWR------YPP---------  279 (767)
Q Consensus       220 ~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg-----svwdl~s~~~~~~l~t~sG~~~------~p~---------  279 (767)
                      .+++.+.......+|.+.|.+|+|+||++.+++.+     ++||+.......++.......+      |+.         
T Consensus       220 ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~  299 (603)
T KOG0318|consen  220 KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLS  299 (603)
T ss_pred             CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcC
Confidence            99987662222348999999999999999998854     4999886654433332221100      111         


Q ss_pred             CeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217          280 PVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       280 ~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                      ..+.+-+..-++...+..|   ..-.+-...-++|++.|+.                 .|-...+..|+..++..++..
T Consensus       300 G~in~ln~~d~~~~~~i~G---HnK~ITaLtv~~d~~~i~S-----------------gsyDG~I~~W~~~~g~~~~~~  358 (603)
T KOG0318|consen  300 GTINYLNPSDPSVLKVISG---HNKSITALTVSPDGKTIYS-----------------GSYDGHINSWDSGSGTSDRLA  358 (603)
T ss_pred             cEEEEecccCCChhheecc---cccceeEEEEcCCCCEEEe-----------------eccCceEEEEecCCccccccc
Confidence            1111111111222223333   3334556777888888775                 234445777777776655543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.84  E-value=1.7e-20  Score=197.60  Aligned_cols=258  Identities=16%  Similarity=0.208  Sum_probs=188.6

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      +.++..  +...+++|..|++|++||.+..    .|.||+++|.|+.|.  .+.|++|+.|.+|+|||+++|+++.++.+
T Consensus       200 VYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlih  275 (499)
T KOG0281|consen  200 VYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIH  275 (499)
T ss_pred             eEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhh
Confidence            444444  7788999999999999999874    688999999999995  56999999999999999999999999999


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe----ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCC
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS----RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMR  222 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~----l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~  222 (767)
                      |...|..+.|+.   .++++++.|.++.+||+.+...+..    .+|...|+.+.|+.  ++++++++|+ |++|++.+.
T Consensus       276 HceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~  350 (499)
T KOG0281|consen  276 HCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTC  350 (499)
T ss_pred             hcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccce
Confidence            999999999965   8999999999999999987664332    46999999999964  5999999777 999999999


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccC---------------CCCeE
Q 004217          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRY---------------PPPVI  282 (767)
Q Consensus       223 ~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~---------------p~~~v  282 (767)
                      +.++   .+.+|+..|.++.+.  |++++++++     +||+..+.+...+.   ||...               -...+
T Consensus       351 efvR---tl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLe---GHEeLvRciRFd~krIVSGaYDGki  422 (499)
T KOG0281|consen  351 EFVR---TLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRFDNKRIVSGAYDGKI  422 (499)
T ss_pred             eeeh---hhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHh---chHHhhhheeecCceeeeccccceE
Confidence            9766   888999999999874  664444333     77877666654443   43221               12456


Q ss_pred             EEecCCCCCCCceeecc------CCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceee
Q 004217          283 CMAGAHSSSHPGLAEEV------PLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYEL  356 (767)
Q Consensus       283 ~l~~~~Ssd~~~L~sg~------~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~  356 (767)
                      .+|+...+....-..+.      ...+.+++...|  |..+|+.                 ++-.-.+..||-.++-+..
T Consensus       423 kvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvs-----------------ssHddtILiWdFl~~~~~~  483 (499)
T KOG0281|consen  423 KVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIIS-----------------SSHDDTILIWDFLNGPPSA  483 (499)
T ss_pred             EEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEe-----------------ccCCCeEEEEEcCCCCccc
Confidence            77776554433211111      112234444444  4444443                 2333457788887765554


Q ss_pred             eeccCCCCC
Q 004217          357 VLSPIASNR  365 (767)
Q Consensus       357 ~~~p~~p~~  365 (767)
                      .=.|..|++
T Consensus       484 ~~~~r~p~~  492 (499)
T KOG0281|consen  484 AEETRSPSR  492 (499)
T ss_pred             cccCCCCCc
Confidence            444444544

>PTZ00421 coronin; Provisional

Probab=99.83  E-value=1.7e-18  Score=198.48  Aligned_cols=187  Identities=14%  Similarity=0.172  Sum_probs=151.4

Q ss_pred             eEEEEEEc-CCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCC-CeEEEEeCCCeEEEEECCC
Q 004217           72 QIFEAGRD-ARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQT  138 (767)
Q Consensus        72 ~~~vA~sd-~g~~LaSgs~DgsIrlWd~~t~-----------~L~gH~~sVtsVaFSpDG-~~LASgs~DGtVrVWDl~t  138 (767)
                      ...++++. ++..|++++.|++|++||+...           .+.+|...|.+++|+|++ ++|++++.|++|+|||+++
T Consensus        78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t  157 (493)
T PTZ00421         78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER  157 (493)
T ss_pred             EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC
Confidence            55667766 6789999999999999998653           367899999999999975 6999999999999999999


Q ss_pred             CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCC-eEEEEEcCCCCEEEEEE-----C
Q 004217          139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRP-IASIAFHASGELLAVAS-----G  211 (767)
Q Consensus       139 g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~-VtsVafSPdG~~LAsgS-----d  211 (767)
                      ++.+..+.+|...|.+++|+| ++++|++++.|++|++||+++++.+..+. |... +..+.|.+++..+++++     +
T Consensus       158 g~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~D  236 (493)
T PTZ00421        158 GKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQ  236 (493)
T ss_pred             CeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCC
Confidence            999999999999999999999 89999999999999999999999887754 5443 45678999888777654     2


Q ss_pred             CcEEEEEcCCCccccCCeEEe-cCCCCeEEEEEccCCCeEEEEEe------eCCcCC
Q 004217          212 HKLYIWRYNMREETSSPRIVL-RTRRSLRAVHFHPHAAPLLLTAE------VNDLDS  261 (767)
Q Consensus       212 d~V~VWDl~t~~~~~~~~~l~-~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s  261 (767)
                      +.|++||+++.....  .... .+...+....|+++++.|++++.      +|++..
T Consensus       237 r~VklWDlr~~~~p~--~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        237 RQIMLWDTRKMASPY--STVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             CeEEEEeCCCCCCce--eEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence            349999998765322  1222 23455667789999998877764      566654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.83  E-value=1.3e-20  Score=201.99  Aligned_cols=184  Identities=16%  Similarity=0.209  Sum_probs=160.5

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      +-.+....+|++|++|+..|.+.+|+....    .++.|...|+++.|+++|.+++||+.+|.||+|+..-. .++.+.+
T Consensus        99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~a  177 (464)
T KOG0284|consen   99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQA  177 (464)
T ss_pred             eeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHHhhH
Confidence            444556789999999999999999999765    36799999999999999999999999999999997644 3555555


Q ss_pred             CC-CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCcc
Q 004217          148 HR-RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE  224 (767)
Q Consensus       148 H~-~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~  224 (767)
                      |. ..|.+++|+| +...|++++.||+|+|||....+.... .+|.-.|.+++|+|.-.+||++++|. |++||.+++.+
T Consensus       178 hh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~c  256 (464)
T KOG0284|consen  178 HHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSC  256 (464)
T ss_pred             hhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcch
Confidence            55 8999999999 889999999999999999998776555 46889999999999999999999877 99999999998


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcC
Q 004217          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLD  260 (767)
Q Consensus       225 ~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~  260 (767)
                      +.   .+.+|+..|.++.|+|++++|++.++     +.|++
T Consensus       257 l~---tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR  294 (464)
T KOG0284|consen  257 LA---TLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR  294 (464)
T ss_pred             hh---hhhhccceEEEEEEcCCCCeeEEccCCceEEEEehh
Confidence            76   78899999999999999998888665     55555

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=4.8e-18  Score=178.13  Aligned_cols=246  Identities=18%  Similarity=0.252  Sum_probs=188.1

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeC--CCeEEEEECCCCeEEEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHG--DHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~--DGtVrVWDl~tg~~l~~L  145 (767)
                      ...+.++++|..+++.++|.++++||...++    +..++-.|..++|-.....++.++.  |.+||..++.+.+.++.|
T Consensus        17 i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF   96 (311)
T KOG1446|consen   17 INSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYF   96 (311)
T ss_pred             eeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEc
Confidence            5567788999999999999999999998873    5567778999999887777777766  889999999999999999


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC-cEEEEEcCCCcc
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREE  224 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd-~V~VWDl~t~~~  224 (767)
                      .||+..|..++.+| .++.++|++.|++|++||++..+|...+..... ..++|+|+|-++|++.+. .|++||++.-..
T Consensus        97 ~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk  174 (311)
T KOG1446|consen   97 PGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSELIKLYDLRSFDK  174 (311)
T ss_pred             CCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCCeEEEEEecccCC
Confidence            99999999999999 779999999999999999999888877654433 247899999999999876 599999997643


Q ss_pred             ccCCeEEe---cCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCC
Q 004217          225 TSSPRIVL---RTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPL  301 (767)
Q Consensus       225 ~~~~~~l~---~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~  301 (767)
                      .. ...+.   ......+.+.|||||++|+.+.....                       +.+-++..+......++.+.
T Consensus       175 gP-F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-----------------------~~~lDAf~G~~~~tfs~~~~  230 (311)
T KOG1446|consen  175 GP-FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-----------------------IYLLDAFDGTVKSTFSGYPN  230 (311)
T ss_pred             CC-ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-----------------------EEEEEccCCcEeeeEeeccC
Confidence            21 11111   33567899999999999988765211                       11112122222222222222


Q ss_pred             CC-CCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeeccC
Q 004217          302 IT-PPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPI  361 (767)
Q Consensus       302 ~s-lpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~p~  361 (767)
                      .. +| +..+|+||++.|+.                 ++....+.+|+.+++..-..+.++
T Consensus       231 ~~~~~-~~a~ftPds~Fvl~-----------------gs~dg~i~vw~~~tg~~v~~~~~~  273 (311)
T KOG1446|consen  231 AGNLP-LSATFTPDSKFVLS-----------------GSDDGTIHVWNLETGKKVAVLRGP  273 (311)
T ss_pred             CCCcc-eeEEECCCCcEEEE-----------------ecCCCcEEEEEcCCCcEeeEecCC
Confidence            11 22 56899999999997                 344567999999998888777654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.83  E-value=2.5e-19  Score=189.52  Aligned_cols=213  Identities=16%  Similarity=0.188  Sum_probs=180.8

Q ss_pred             CcceeecccccceecCC-----cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEE
Q 004217           53 HSSKRLLGETARKCSGS-----FSQIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLA  123 (767)
Q Consensus        53 ~~sk~~wd~~~~~~~~s-----~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LA  123 (767)
                      ....++||-.......+     ....-+++++-.-+|+++.+|+.|+.||+++.+    +.||-..|.|++..|.-..|+
T Consensus       172 DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~  251 (460)
T KOG0285|consen  172 DRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLV  251 (460)
T ss_pred             CceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEE
Confidence            34566777654443211     124556778888999999999999999999874    679999999999999999999


Q ss_pred             EEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCC
Q 004217          124 STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHAS  202 (767)
Q Consensus       124 Sgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPd  202 (767)
                      +|+.|.++||||+++...+..+.||+..|..+.+.| -...+++|+.|++|++||++.++....+ .|+..|.+++.+|.
T Consensus       252 t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~  330 (460)
T KOG0285|consen  252 TGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPK  330 (460)
T ss_pred             ecCCcceEEEeeecccceEEEecCCCCcceeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCc
Confidence            999999999999999999999999999999999999 6667999999999999999999887775 57889999999999


Q ss_pred             CCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEee
Q 004217          203 GELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLAT  270 (767)
Q Consensus       203 G~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t  270 (767)
                      ...+|+++.|.|+-|++..+....   .+.+|..-|++++.+.||- +++++.     .||++++...+...+
T Consensus       331 e~~fASas~dnik~w~~p~g~f~~---nlsgh~~iintl~~nsD~v-~~~G~dng~~~fwdwksg~nyQ~~~t  399 (460)
T KOG0285|consen  331 ENLFASASPDNIKQWKLPEGEFLQ---NLSGHNAIINTLSVNSDGV-LVSGGDNGSIMFWDWKSGHNYQRGQT  399 (460)
T ss_pred             hhhhhccCCccceeccCCccchhh---ccccccceeeeeeeccCce-EEEcCCceEEEEEecCcCcccccccc
Confidence            999999999999999999988766   5889999999999999886 555544     788887776665543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.83  E-value=3.4e-19  Score=193.88  Aligned_cols=180  Identities=19%  Similarity=0.234  Sum_probs=158.9

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---------------------------------------------CCCCC
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC---------------------------------------------PLSPP  106 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---------------------------------------------~L~gH  106 (767)
                      ...+..+..|.+|++++.|+++.+||..++                                             ++.+|
T Consensus       279 I~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH  358 (524)
T KOG0273|consen  279 IFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGH  358 (524)
T ss_pred             eEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecc
Confidence            555667778889999999999999998432                                             24589


Q ss_pred             CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCC--------CcEEEEEeCCCeEEEEE
Q 004217          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLN--------PTIIASGSLDHEVRLWN  178 (767)
Q Consensus       107 ~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~d--------g~lLaSgS~DGtVrIWD  178 (767)
                      .+.|.++.|+|.|.+|++++.|++++||......+.+.|.+|...|+.+.|+|.+        +..+++++.|++|++||
T Consensus       359 ~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwd  438 (524)
T KOG0273|consen  359 HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWD  438 (524)
T ss_pred             cCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEE
Confidence            9999999999999999999999999999999999999999999999999999942        45899999999999999


Q ss_pred             CCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          179 ASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       179 l~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +..+.++..+ +|..+|++++|+|+|+++|+|+-|+ |.+|+.++++..+    .....+.|..|+|+.+|.+|.++.+
T Consensus       439 v~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~----s~~~~~~Ifel~Wn~~G~kl~~~~s  513 (524)
T KOG0273|consen  439 VESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK----SYQGTGGIFELCWNAAGDKLGACAS  513 (524)
T ss_pred             ccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE----eecCCCeEEEEEEcCCCCEEEEEec
Confidence            9999999997 7999999999999999999999655 9999999998655    3445677999999999997776654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.82  E-value=1.3e-19  Score=205.28  Aligned_cols=180  Identities=22%  Similarity=0.281  Sum_probs=161.7

Q ss_pred             eEEEEEE-cCCCEEEEEeCCCeEEEEeCCCC-------C------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECC
Q 004217           72 QIFEAGR-DARRGLASWVEAESLHHLRPKYC-------P------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ  137 (767)
Q Consensus        72 ~~~vA~s-d~g~~LaSgs~DgsIrlWd~~t~-------~------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~  137 (767)
                      ...++.+ ..-.++++++.|.++++|++...       .      ...|...|+|++.+|+.++||+||.|++.+||+++
T Consensus       414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le  493 (775)
T KOG0319|consen  414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE  493 (775)
T ss_pred             cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc
Confidence            4445543 34578999999999999998762       1      23799999999999999999999999999999999


Q ss_pred             CCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EE
Q 004217          138 TGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LY  215 (767)
Q Consensus       138 tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~  215 (767)
                      .+....+|.||+..|+++.|+| ..++++|+|.|++|+||.+.+..|++++. |...|..+.|-.+|+.|++++.++ |+
T Consensus       494 ~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliK  572 (775)
T KOG0319|consen  494 QLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIK  572 (775)
T ss_pred             CceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEE
Confidence            9999999999999999999999 88999999999999999999999999987 999999999999999999998777 99


Q ss_pred             EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       216 VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +|++++.++..   .+..|.+.|++++.+|++..+++++.
T Consensus       573 lWnikt~eC~~---tlD~H~DrvWaL~~~~~~~~~~tgg~  609 (775)
T KOG0319|consen  573 LWNIKTNECEM---TLDAHNDRVWALSVSPLLDMFVTGGG  609 (775)
T ss_pred             EEeccchhhhh---hhhhccceeEEEeecCccceeEecCC
Confidence            99999999766   88999999999999999995555544

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.7e-19  Score=184.15  Aligned_cols=185  Identities=18%  Similarity=0.277  Sum_probs=158.1

Q ss_pred             EcCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCC
Q 004217           78 RDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (767)
Q Consensus        78 sd~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~  151 (767)
                      ......+++++.||++++||....     .++.|...|.++.|++ +++.+++++.|++||+||...++.+.+|.||..-
T Consensus        70 e~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~  149 (311)
T KOG0277|consen   70 ENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSC  149 (311)
T ss_pred             CCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccE
Confidence            345677888999999999996543     4779999999999999 7778888999999999999999999999999999


Q ss_pred             cEEEEEccCCCcEEEEEeCCCeEEEEECCC-CeEEEeecCCCCeEEEEEcCCC-CEEEEEECCc-EEEEEcCCCccccCC
Q 004217          152 PWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGSRDFYRPIASIAFHASG-ELLAVASGHK-LYIWRYNMREETSSP  228 (767)
Q Consensus       152 V~sLafsP~dg~lLaSgS~DGtVrIWDl~t-g~~i~~l~h~~~VtsVafSPdG-~~LAsgSdd~-V~VWDl~t~~~~~~~  228 (767)
                      |+...|+|...++++++|.|+++++||++. |+.+....|...|.++.|+.-. +.|++|+-|. |++||+++-+.  +.
T Consensus       150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~--pl  227 (311)
T KOG0277|consen  150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT--PL  227 (311)
T ss_pred             EEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc--cc
Confidence            999999999999999999999999999986 4545544588899999998754 5788888665 99999998765  45


Q ss_pred             eEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCc
Q 004217          229 RIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSES  264 (767)
Q Consensus       229 ~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~  264 (767)
                      ..+.+|.-.|+.|.|||...-++++++      +|+....+.
T Consensus       228 ~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds  269 (311)
T KOG0277|consen  228 FELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS  269 (311)
T ss_pred             eeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh
Confidence            678999999999999999888888776      777764443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.82  E-value=5.7e-20  Score=200.55  Aligned_cols=236  Identities=16%  Similarity=0.199  Sum_probs=177.2

Q ss_pred             CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCC-CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEEC
Q 004217          102 PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT-GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~t-g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl  179 (767)
                      .+.+|+..|+++.|.| .+.+|++++.|+.|+||++-. ++++++|.+|..+|..++|+. ++..|+|++.|+.|++||+
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDt  287 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDT  287 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeecc
Confidence            5779999999999999 999999999999999999976 899999999999999999999 9999999999999999999


Q ss_pred             CCCeEEEeecCCCCeEEEEEcCCC-CEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe--
Q 004217          180 STAECIGSRDFYRPIASIAFHASG-ELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE--  255 (767)
Q Consensus       180 ~tg~~i~~l~h~~~VtsVafSPdG-~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs--  255 (767)
                      ++|+++..+.....++|+.|+|++ +.+++|+. ++|+.||+++++.++   .+..|-+.|..+.|-++|+++++++.  
T Consensus       288 ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq---eYd~hLg~i~~i~F~~~g~rFissSDdk  364 (503)
T KOG0282|consen  288 ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ---EYDRHLGAILDITFVDEGRRFISSSDDK  364 (503)
T ss_pred             ccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH---HHHhhhhheeeeEEccCCceEeeeccCc
Confidence            999999999999999999999999 56666664 559999999999766   67788999999999999999999887  


Q ss_pred             ---eCCcCCCCcceeEeecCCC-----ccCCCC----------eEEEecCCCCCCCceeeccCCCCCCce--eeEEecCC
Q 004217          256 ---VNDLDSSESSLTLATSPGY-----WRYPPP----------VICMAGAHSSSHPGLAEEVPLITPPFL--RPSFVRDD  315 (767)
Q Consensus       256 ---vwdl~s~~~~~~l~t~sG~-----~~~p~~----------~v~l~~~~Ssd~~~L~sg~~~~slpil--~psFSpDg  315 (767)
                         +|+++..-....+....-|     ..+|..          .+.+.........+...---+...+..  .+.|||||
T Consensus       365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG  444 (503)
T KOG0282|consen  365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG  444 (503)
T ss_pred             cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC
Confidence               6666533322211111111     011111          111111111111111111111223333  68899999


Q ss_pred             CEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217          316 ERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       316 ~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                      +.|+.                 +.+...+.+||..+-+....+
T Consensus       445 ~~l~S-----------------GdsdG~v~~wdwkt~kl~~~l  470 (503)
T KOG0282|consen  445 RTLCS-----------------GDSDGKVNFWDWKTTKLVSKL  470 (503)
T ss_pred             CeEEe-----------------ecCCccEEEeechhhhhhhcc
Confidence            99997                 344557899999776655555

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=2.3e-18  Score=177.32  Aligned_cols=183  Identities=21%  Similarity=0.289  Sum_probs=155.0

Q ss_pred             eEEEEEEcC-CCEEEEEeCCCeEEEEeCCCC-----C--C-CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC--e
Q 004217           72 QIFEAGRDA-RRGLASWVEAESLHHLRPKYC-----P--L-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--S  140 (767)
Q Consensus        72 ~~~vA~sd~-g~~LaSgs~DgsIrlWd~~t~-----~--L-~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg--~  140 (767)
                      .-.++.... |..|++++.|+.|++|+...+     +  + .+|++.|..++|+|.|++|++++.|.++-||.-..+  +
T Consensus        17 ~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efe   96 (312)
T KOG0645|consen   17 VWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFE   96 (312)
T ss_pred             EEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCcee
Confidence            344666666 778999999999999999842     1  2 379999999999999999999999999999987654  6


Q ss_pred             EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC---eEEEee-cCCCCeEEEEEcCCCCEEEEEEC-CcEE
Q 004217          141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA---ECIGSR-DFYRPIASIAFHASGELLAVASG-HKLY  215 (767)
Q Consensus       141 ~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg---~~i~~l-~h~~~VtsVafSPdG~~LAsgSd-d~V~  215 (767)
                      ++.+|.||...|.+++|++ ++++|++++.|+.|.||.+..+   ++...+ +|...|..+.|||...+|++++. +.|+
T Consensus        97 cv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk  175 (312)
T KOG0645|consen   97 CVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIK  175 (312)
T ss_pred             EEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEE
Confidence            8899999999999999999 9999999999999999999854   345554 48899999999999999999995 5599


Q ss_pred             EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       216 VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +|+-...........+.+|...|.+++|+++|..|+++..
T Consensus       176 ~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd  215 (312)
T KOG0645|consen  176 VYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD  215 (312)
T ss_pred             EEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC
Confidence            9987644433345578899999999999999988887765

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=1.1e-18  Score=200.17  Aligned_cols=205  Identities=18%  Similarity=0.261  Sum_probs=169.7

Q ss_pred             EEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217           73 IFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (767)
Q Consensus        73 ~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH  148 (767)
                      .-+++...+-.+.++--.|.|++||...+    ++.+|.++|..++|+|++.+++||++|-+|+||+.++.+|+.++.||
T Consensus        13 KglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GH   92 (1202)
T KOG0292|consen   13 KGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGH   92 (1202)
T ss_pred             cceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccc
Confidence            34566778889999999999999999887    57799999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECC-cEEEEEcCCCccc-
Q 004217          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREET-  225 (767)
Q Consensus       149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd-~V~VWDl~t~~~~-  225 (767)
                      -+.|..+.||+ .-.+++|+|.|.+|+||+..+++++..+ +|...|.|..|+|....++++|-| +|+|||+..-+.. 
T Consensus        93 lDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~  171 (1202)
T KOG0292|consen   93 LDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN  171 (1202)
T ss_pred             cceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccC
Confidence            99999999999 8899999999999999999999999986 599999999999999999999955 5999998532210 


Q ss_pred             -------------------------cCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCc
Q 004217          226 -------------------------SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYW  275 (767)
Q Consensus       226 -------------------------~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~  275 (767)
                                               .....+.+|...|+.++|+|.-..+++++.     +|.+... ..-.+.+..||.
T Consensus       172 ~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet-KaWEvDtcrgH~  250 (1202)
T KOG0292|consen  172 KAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-KAWEVDTCRGHY  250 (1202)
T ss_pred             CCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc-cceeehhhhccc
Confidence                                     012456789999999999999986666555     4433311 112344556665


Q ss_pred             cCCC
Q 004217          276 RYPP  279 (767)
Q Consensus       276 ~~p~  279 (767)
                      +...
T Consensus       251 nnVs  254 (1202)
T KOG0292|consen  251 NNVS  254 (1202)
T ss_pred             CCcc
Confidence            5433

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.81  E-value=4.6e-18  Score=170.81  Aligned_cols=180  Identities=27%  Similarity=0.381  Sum_probs=156.5

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ...+.+..++..++++..++.|++|+..+.    .+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..
T Consensus        96 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~  175 (289)
T cd00200          96 VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG  175 (289)
T ss_pred             EEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec
Confidence            455666666788888888999999999854    3567999999999999999999888899999999999998999999


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCccc
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREET  225 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~  225 (767)
                      |...+.++.|+| +++.+++++.|+.|++||+++++.+..+ .+...+.+++|+|++.++++++ ++.|++||+.+++..
T Consensus       176 ~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~  254 (289)
T cd00200         176 HTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV  254 (289)
T ss_pred             CccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeE
Confidence            999999999999 7888888888999999999998888887 6888999999999999999888 566999999987654


Q ss_pred             cCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .   .+..|...|.+++|+|+++++++++.
T Consensus       255 ~---~~~~~~~~i~~~~~~~~~~~l~~~~~  281 (289)
T cd00200         255 Q---TLSGHTNSVTSLAWSPDGKRLASGSA  281 (289)
T ss_pred             E---EccccCCcEEEEEECCCCCEEEEecC
Confidence            4   45578889999999999997777664

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.81  E-value=1.9e-18  Score=189.51  Aligned_cols=248  Identities=17%  Similarity=0.175  Sum_probs=179.7

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC--------CCC-CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC--------PLS-PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL  142 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~--------~L~-gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l  142 (767)
                      +...++...|-++++|+-|-.|++||+...        +|. .....|.++.||+.|..|++.+..-..+|+|-+....+
T Consensus       170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~  249 (641)
T KOG0772|consen  170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIV  249 (641)
T ss_pred             EEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceee
Confidence            666778889999999999999999999753        222 34567999999999999998888889999996543322


Q ss_pred             E------------EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE-EEeec------CCCCeEEEEEcCCC
Q 004217          143 K------------VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSRD------FYRPIASIAFHASG  203 (767)
Q Consensus       143 ~------------~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~-i~~l~------h~~~VtsVafSPdG  203 (767)
                      .            .-+||...+++.+|+|.+.+.|++++.||++||||+...+. ...+.      ..-.++.++|+++|
T Consensus       250 e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg  329 (641)
T KOG0772|consen  250 EFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDG  329 (641)
T ss_pred             eeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCc
Confidence            2            23689999999999998889999999999999999986443 22232      23468899999999


Q ss_pred             CEEEEEECCc-EEEEEcCCCccccCCeEEecCCC--CeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCc
Q 004217          204 ELLAVASGHK-LYIWRYNMREETSSPRIVLRTRR--SLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYW  275 (767)
Q Consensus       204 ~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~--~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~  275 (767)
                      ++||+|..|+ |.+||......-........|..  .|++|.||+||++|++-+.     +||++......         
T Consensus       330 ~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL---------  400 (641)
T KOG0772|consen  330 KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPL---------  400 (641)
T ss_pred             chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccch---------
Confidence            9999999666 99999865543222334556766  8999999999998887554     77777433211         


Q ss_pred             cCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCcee
Q 004217          276 RYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYE  355 (767)
Q Consensus       276 ~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~  355 (767)
                                        ...++.+ ...+.-.++||||++.|+.       |++..    .+.....|.|||.-+-+.-
T Consensus       401 ------------------~~~tgL~-t~~~~tdc~FSPd~kli~T-------GtS~~----~~~~~g~L~f~d~~t~d~v  450 (641)
T KOG0772|consen  401 ------------------NVRTGLP-TPFPGTDCCFSPDDKLILT-------GTSAP----NGMTAGTLFFFDRMTLDTV  450 (641)
T ss_pred             ------------------hhhcCCC-ccCCCCccccCCCceEEEe-------ccccc----CCCCCceEEEEeccceeeE
Confidence                              1111211 1123336899999999886       22221    2233446899998775544


Q ss_pred             eee
Q 004217          356 LVL  358 (767)
Q Consensus       356 ~~~  358 (767)
                      ..|
T Consensus       451 ~ki  453 (641)
T KOG0772|consen  451 YKI  453 (641)
T ss_pred             EEe
Confidence            444

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.81  E-value=2.3e-18  Score=183.68  Aligned_cols=191  Identities=19%  Similarity=0.260  Sum_probs=165.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC--------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECC--------------
Q 004217           80 ARRGLASWVEAESLHHLRPKYCP--------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ--------------  137 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~~--------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~--------------  137 (767)
                      ....+++++.|+++++|..+.+.        -.||.+.|-+++..++|..+++|+.|.+|+||+..              
T Consensus       158 ~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r  237 (423)
T KOG0313|consen  158 SSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR  237 (423)
T ss_pred             ccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhh
Confidence            34579999999999999987652        34999999999999999999999999999999931              


Q ss_pred             -----------CCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEE
Q 004217          138 -----------TGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELL  206 (767)
Q Consensus       138 -----------tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~L  206 (767)
                                 ++.++..+.||+..|.++.|++  ...+++++.|.+|+.||+.++.++..+......+++.++|..++|
T Consensus       238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll  315 (423)
T KOG0313|consen  238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLL  315 (423)
T ss_pred             hhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeeccccccee
Confidence                       1235677899999999999987  788999999999999999999999999989999999999999999


Q ss_pred             EEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeEeecCCC
Q 004217          207 AVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLATSPGY  274 (767)
Q Consensus       207 AsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~~~~l~t~sG~  274 (767)
                      ++|+.++ |++||.+++........+.+|.+.|.++.|+|...+++++++      +||++...  ..+....+|
T Consensus       316 ~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h  388 (423)
T KOG0313|consen  316 ASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGH  388 (423)
T ss_pred             eecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--CcceeeccC
Confidence            9999877 999999988765555778999999999999999999999887      88888644  234444455

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=2e-18  Score=192.55  Aligned_cols=182  Identities=16%  Similarity=0.287  Sum_probs=162.6

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC-eEEEEEccCC
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG-SCLKVLHGHR  149 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg-~~l~~L~gH~  149 (767)
                      ..+-.-...+++|+.|..|++++..+.    ++..|.+-|.+++.+|...+++++++|-+||+||.+.+ .+.++|.||.
T Consensus        61 ~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~  140 (794)
T KOG0276|consen   61 AKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHE  140 (794)
T ss_pred             heeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcc
Confidence            334457789999999999999999987    47899999999999999999999999999999999864 6789999999


Q ss_pred             CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCC--CEEEEEECCc-EEEEEcCCCccc
Q 004217          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASG--ELLAVASGHK-LYIWRYNMREET  225 (767)
Q Consensus       150 ~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG--~~LAsgSdd~-V~VWDl~t~~~~  225 (767)
                      ..|.+++|+|.|.+.|+|++.|++|++|.+.+..+..+++ |...|+|++|-+-|  .+|++|+||. |+|||..+..++
T Consensus       141 HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV  220 (794)
T KOG0276|consen  141 HYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV  220 (794)
T ss_pred             eEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH
Confidence            9999999999999999999999999999999988888864 99999999998877  4999999887 999999999987


Q ss_pred             cCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCc
Q 004217          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDL  259 (767)
Q Consensus       226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl  259 (767)
                      +   ++.+|...|..+.|+|.-..+++++++..+
T Consensus       221 ~---TLeGHt~Nvs~v~fhp~lpiiisgsEDGTv  251 (794)
T KOG0276|consen  221 Q---TLEGHTNNVSFVFFHPELPIIISGSEDGTV  251 (794)
T ss_pred             H---HhhcccccceEEEecCCCcEEEEecCCccE
Confidence            7   889999999999999998866655553333

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=1.5e-18  Score=175.61  Aligned_cols=197  Identities=21%  Similarity=0.221  Sum_probs=162.2

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ...+...-+|.+..++..|++|++|+...+    ++.+|...|.+++.+.|...|++|+.|..|.+||+++|+.++.|.+
T Consensus        20 V~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg   99 (307)
T KOG0316|consen   20 VRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRG   99 (307)
T ss_pred             eEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccc
Confidence            555667789999999999999999999887    5779999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC--CeEEEeec-CCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCc
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST--AECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMRE  223 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t--g~~i~~l~-h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~  223 (767)
                      |.+.|+.++|+. +...+++|+.|.++++||.++  .++++.+. ....|.++...  +..|++|+ |+.++.||++.+.
T Consensus       100 H~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~  176 (307)
T KOG0316|consen  100 HLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT  176 (307)
T ss_pred             ccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecce
Confidence            999999999999 899999999999999999986  45666664 67788888774  55777887 5559999999997


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcC--CCCcceeEeecCCCcc
Q 004217          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD--SSESSLTLATSPGYWR  276 (767)
Q Consensus       224 ~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~--s~~~~~~l~t~sG~~~  276 (767)
                      ...   -  -...+|++++|++|++..++++-.-.++  ..+....+....||.+
T Consensus       177 l~s---D--y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn  226 (307)
T KOG0316|consen  177 LSS---D--YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN  226 (307)
T ss_pred             eeh---h--hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc
Confidence            633   2  2356999999999999888776422222  2233345555666643

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.80  E-value=1.2e-18  Score=197.51  Aligned_cols=192  Identities=20%  Similarity=0.244  Sum_probs=165.3

Q ss_pred             EEcCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeE-----E
Q 004217           77 GRDARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSC-----L  142 (767)
Q Consensus        77 ~sd~g~~LaSgs~DgsIrlWd~~t~--------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~-----l  142 (767)
                      ..+.|..|++++.|+++++|.++..        +..+|+..|.+++++. ...+|+++|.|+++++|++...+.     +
T Consensus       373 ~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~  452 (775)
T KOG0319|consen  373 VWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIV  452 (775)
T ss_pred             ecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccce
Confidence            4467789999999999999987432        3569999999999988 446899999999999999976221     1


Q ss_pred             E----EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEE
Q 004217          143 K----VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYI  216 (767)
Q Consensus       143 ~----~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~V  216 (767)
                      .    ....|...|++++.+| +..++++||.|++.+||++........+ +|...|.++.|+|..+.++++|.|+ |+|
T Consensus       453 ~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKI  531 (775)
T KOG0319|consen  453 LTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKI  531 (775)
T ss_pred             ehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEE
Confidence            1    2357999999999999 9999999999999999999988888876 5999999999999999999999777 999


Q ss_pred             EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecC
Q 004217          217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSP  272 (767)
Q Consensus       217 WDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~s  272 (767)
                      |.+.+..+..   .+.+|...|..+.|-.+|+.|++++.     +|++.+.+|...+..++
T Consensus       532 W~is~fSClk---T~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~  589 (775)
T KOG0319|consen  532 WSISTFSCLK---TFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHN  589 (775)
T ss_pred             EEeccceeee---eecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcc
Confidence            9999998766   89999999999999999999988776     89998888866665433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.80  E-value=2.4e-17  Score=199.47  Aligned_cols=175  Identities=15%  Similarity=0.183  Sum_probs=146.8

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcE
Q 004217           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~  153 (767)
                      ..+..|++++.|++|++||..++    .+.+|.+.|++++|+| ++.+|++|+.|++|++||+.++..+..+..+ ..|.
T Consensus       543 ~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~  621 (793)
T PLN00181        543 YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC  621 (793)
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence            35788999999999999999876    4679999999999997 8899999999999999999999988888755 6799


Q ss_pred             EEEEccCCCcEEEEEeCCCeEEEEECCCCe-EEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCcc---ccC
Q 004217          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE---TSS  227 (767)
Q Consensus       154 sLafsP~dg~lLaSgS~DGtVrIWDl~tg~-~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~---~~~  227 (767)
                      ++.|++.++.+|++|+.|++|++||+++.+ .+.. ..|...|.++.|. ++.+|++++.|+ |++||++....   ...
T Consensus       622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~  700 (793)
T PLN00181        622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETP  700 (793)
T ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcc
Confidence            999976579999999999999999998765 3333 4688999999997 678888888665 99999975421   112


Q ss_pred             CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       228 ~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ...+.+|...+..++|+|++.+|++++.
T Consensus       701 l~~~~gh~~~i~~v~~s~~~~~lasgs~  728 (793)
T PLN00181        701 LHSFMGHTNVKNFVGLSVSDGYIATGSE  728 (793)
T ss_pred             eEEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence            3467789999999999999997776664

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.79  E-value=5.7e-18  Score=199.07  Aligned_cols=182  Identities=21%  Similarity=0.260  Sum_probs=153.3

Q ss_pred             eEEEEEEcCCCEEEEEe--CCCeEEEEeCCC----------------CCCCCCCCCeEEEEECCCCCeEEEEeCCCeEEE
Q 004217           72 QIFEAGRDARRGLASWV--EAESLHHLRPKY----------------CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKI  133 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs--~DgsIrlWd~~t----------------~~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrV  133 (767)
                      ...+....++..+++|+  .|+.+++|+.+.                +++..|.+.|+|+.|++||++||+|++|+.|.|
T Consensus        16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~i   95 (942)
T KOG0973|consen   16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMI   95 (942)
T ss_pred             EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEE
Confidence            44566778999999999  899999999753                135689999999999999999999999999999


Q ss_pred             EECCC------------------CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCe
Q 004217          134 IDCQT------------------GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPI  194 (767)
Q Consensus       134 WDl~t------------------g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~V  194 (767)
                      |+...                  .+++..|.+|...|..++|+| ++.+|++++.|++|.|||.++.++++.+ +|.+.|
T Consensus        96 W~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~V  174 (942)
T KOG0973|consen   96 WERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLV  174 (942)
T ss_pred             eeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecccccc
Confidence            99762                  136778899999999999999 9999999999999999999999888876 499999


Q ss_pred             EEEEEcCCCCEEEEEECCc-EEEEEcCCCcccc---CCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          195 ASIAFHASGELLAVASGHK-LYIWRYNMREETS---SPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       195 tsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~---~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      -.+.|+|-|+|||+-++|+ |+||++.+.....   .++........++.+.|||||++|++.-
T Consensus       175 KGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n  238 (942)
T KOG0973|consen  175 KGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN  238 (942)
T ss_pred             cceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence            9999999999999999888 9999976643322   1112222355689999999999888743

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.79  E-value=1.2e-18  Score=182.17  Aligned_cols=182  Identities=19%  Similarity=0.228  Sum_probs=158.5

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC------------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYCP------------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT  138 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~------------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t  138 (767)
                      .+.+..++.++++|++++.||-|.+|+..+++            +.-+..+|.|+.||.|...||+|+.||.|+||.+++
T Consensus       215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t  294 (508)
T KOG0275|consen  215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET  294 (508)
T ss_pred             chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence            36677889999999999999999999998874            335788999999999999999999999999999999


Q ss_pred             CeEEEEEc-cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EE
Q 004217          139 GSCLKVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LY  215 (767)
Q Consensus       139 g~~l~~L~-gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~  215 (767)
                      |.|++.|. .|+..|+++.|+. |+..+++++.|.+++|.-+++|++++.+ +|.+.|+...|.++|.++++++.|+ |+
T Consensus       295 G~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvk  373 (508)
T KOG0275|consen  295 GQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVK  373 (508)
T ss_pred             chHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEE
Confidence            99999996 8999999999999 8899999999999999999999999996 5899999999999999999998665 99


Q ss_pred             EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       216 VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      +|+.++.+++. .....+....|+++..-|.+.--+..|
T Consensus       374 vW~~KtteC~~-Tfk~~~~d~~vnsv~~~PKnpeh~iVC  411 (508)
T KOG0275|consen  374 VWHGKTTECLS-TFKPLGTDYPVNSVILLPKNPEHFIVC  411 (508)
T ss_pred             EecCcchhhhh-hccCCCCcccceeEEEcCCCCceEEEE
Confidence            99999998766 222334566888888888665433333

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.78  E-value=6.7e-19  Score=192.25  Aligned_cols=224  Identities=18%  Similarity=0.185  Sum_probs=173.5

Q ss_pred             EcCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCc
Q 004217           78 RDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (767)
Q Consensus        78 sd~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V  152 (767)
                      ...+..|.+++.|+.|++|++-..     ++.+|..+|.+++|+.+|..|++++.|+.|++||+++|+++..|. -...+
T Consensus       224 p~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~  302 (503)
T KOG0282|consen  224 PKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVP  302 (503)
T ss_pred             cceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCc
Confidence            347888999999999999999762     588999999999999999999999999999999999999999886 34567


Q ss_pred             EEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeE
Q 004217          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRI  230 (767)
Q Consensus       153 ~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~  230 (767)
                      +++.|+|++.+.|++|+.|+.|+.||+++++.++++. |-+.|..+.|-++|+.++++++++ ++||+.+..-.+.  ..
T Consensus       303 ~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik--~i  380 (503)
T KOG0282|consen  303 TCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK--NI  380 (503)
T ss_pred             eeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch--hh
Confidence            8999999777999999999999999999999988875 778999999999999999999887 9999998876654  22


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCC
Q 004217          231 VLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPP  305 (767)
Q Consensus       231 l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slp  305 (767)
                      ...+.....++..+|++.++++-+-     +..+.............||.-   ....+....++|...|.+|..+..+-
T Consensus       381 ~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v---aGys~~v~fSpDG~~l~SGdsdG~v~  457 (503)
T KOG0282|consen  381 ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV---AGYSCQVDFSPDGRTLCSGDSDGKVN  457 (503)
T ss_pred             cchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec---cCceeeEEEcCCCCeEEeecCCccEE
Confidence            2334456778999999997665332     111111111222233445421   22333444578888888886665554


Q ss_pred             ce
Q 004217          306 FL  307 (767)
Q Consensus       306 il  307 (767)
                      +|
T Consensus       458 ~w  459 (503)
T KOG0282|consen  458 FW  459 (503)
T ss_pred             Ee
Confidence            44

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=2.5e-17  Score=169.69  Aligned_cols=152  Identities=29%  Similarity=0.538  Sum_probs=131.9

Q ss_pred             CCCCCCCCeEEEEECCC-CCeEEEEeCCCeEEEEECCCC---eEEEEE-ccCCCCcEEEEEccCCCcEEEEEeCCCeEEE
Q 004217          102 PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTG---SCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpD-G~~LASgs~DGtVrVWDl~tg---~~l~~L-~gH~~~V~sLafsP~dg~lLaSgS~DGtVrI  176 (767)
                      ++.+|++.|..++|+|- |..||+|+.|+.||||+...+   .+...+ .+|+..|.+++|+| .+++|+++|.|.++.|
T Consensus         9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t~~I   87 (312)
T KOG0645|consen    9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDATVVI   87 (312)
T ss_pred             eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccceEEE
Confidence            57899999999999996 889999999999999999853   344444 57999999999999 9999999999999999


Q ss_pred             EECCC--CeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217          177 WNAST--AECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       177 WDl~t--g~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla  252 (767)
                      |.-..  .+++..++ |...|.+++|+++|++||+++.|+ |.||.+....+......+..|...|..+.|+|... |++
T Consensus        88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~  166 (312)
T KOG0645|consen   88 WKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLF  166 (312)
T ss_pred             eecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeE
Confidence            98664  45666664 999999999999999999999877 99999997776666678899999999999999988 555


Q ss_pred             EEe
Q 004217          253 TAE  255 (767)
Q Consensus       253 Sgs  255 (767)
                      +++
T Consensus       167 S~S  169 (312)
T KOG0645|consen  167 SCS  169 (312)
T ss_pred             Eec
Confidence            554

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.78  E-value=4.6e-17  Score=179.25  Aligned_cols=227  Identities=19%  Similarity=0.209  Sum_probs=167.6

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CC---CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE-
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP----LS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-  143 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~---gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~-  143 (767)
                      +.++..+++|.++++.+.|++|.+||-++++    |.   +|++.|.+++|+||+++|++++.|.++||||+.++++++ 
T Consensus       193 V~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t  272 (603)
T KOG0318|consen  193 VNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVST  272 (603)
T ss_pred             eeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEE
Confidence            6677888999999999999999999999873    44   899999999999999999999999999999997654333 


Q ss_pred             ------------------------------------------EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC
Q 004217          144 ------------------------------------------VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (767)
Q Consensus       144 ------------------------------------------~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t  181 (767)
                                                                .+.||...|+++..+| ++++|++|+.||.|.-||..+
T Consensus       273 ~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~  351 (603)
T KOG0318|consen  273 WPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGS  351 (603)
T ss_pred             eecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCC
Confidence                                                      3348999999999999 889999999999999999876


Q ss_pred             CeEEEe-------------------------------e---------------c--------------------------
Q 004217          182 AECIGS-------------------------------R---------------D--------------------------  189 (767)
Q Consensus       182 g~~i~~-------------------------------l---------------~--------------------------  189 (767)
                      +..-+.                               +               +                          
T Consensus       352 g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l  431 (603)
T KOG0318|consen  352 GTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLL  431 (603)
T ss_pred             ccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEE
Confidence            543100                               0               0                          


Q ss_pred             ----------CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe---
Q 004217          190 ----------FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE---  255 (767)
Q Consensus       190 ----------h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs---  255 (767)
                                ..-...+++++|++..+++|+.|+ |+||.+....... ......|...|++|+||||+.+|+++--   
T Consensus       432 ~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e-e~~~~~h~a~iT~vaySpd~~yla~~Da~rk  510 (603)
T KOG0318|consen  432 QDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE-EAKLLEHRAAITDVAYSPDGAYLAAGDASRK  510 (603)
T ss_pred             ecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccc-eeeeecccCCceEEEECCCCcEEEEeccCCc
Confidence                      001123679999999999999665 9999998766433 4467789999999999999997766533   


Q ss_pred             --eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCce
Q 004217          256 --VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL  307 (767)
Q Consensus       256 --vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil  307 (767)
                        +|++...+....-     +.-+..++.+++  -+++..++++|+.+...-+|
T Consensus       511 vv~yd~~s~~~~~~~-----w~FHtakI~~~a--WsP~n~~vATGSlDt~Viiy  557 (603)
T KOG0318|consen  511 VVLYDVASREVKTNR-----WAFHTAKINCVA--WSPNNKLVATGSLDTNVIIY  557 (603)
T ss_pred             EEEEEcccCceecce-----eeeeeeeEEEEE--eCCCceEEEeccccceEEEE
Confidence              5666543331111     100112223322  25566666666555554444

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.78  E-value=2.7e-17  Score=189.62  Aligned_cols=247  Identities=20%  Similarity=0.243  Sum_probs=191.7

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEE
Q 004217           81 RRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sL  155 (767)
                      ++.+++++.+++|++|+...+     ++.+|.+.|.+++|..-+.+|++|+.|.+++|||+.+|+|...+.+|...|.++
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~  297 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL  297 (537)
T ss_pred             cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE
Confidence            788999999999999999886     388999999999999878899999999999999999999999999999999999


Q ss_pred             EEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEec
Q 004217          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLR  233 (767)
Q Consensus       156 afsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~  233 (767)
                      ...+   ..+++|+.|.+|++||+.++.++..+. |..+|.++..+  +.++++|+.++ |++||+.+++.+.   .+.+
T Consensus       298 ~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~---sl~g  369 (537)
T KOG0274|consen  298 TIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLK---SLSG  369 (537)
T ss_pred             EccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeee---eecC
Confidence            8855   889999999999999999999999988 99999999997  78899998666 9999999888766   8889


Q ss_pred             CCCCeEEEEEccCCCeEEEEEe------eCCcCCC-CcceeEeecCCCcc------------CCCCeEEEecCCCCCCCc
Q 004217          234 TRRSLRAVHFHPHAAPLLLTAE------VNDLDSS-ESSLTLATSPGYWR------------YPPPVICMAGAHSSSHPG  294 (767)
Q Consensus       234 h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~-~~~~~l~t~sG~~~------------~p~~~v~l~~~~Ssd~~~  294 (767)
                      |...|+++.+.+. . .+.+++      +||++.. ++...+..+.....            ...+.+.+|+........
T Consensus       370 H~~~V~sl~~~~~-~-~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~  447 (537)
T KOG0274|consen  370 HTGRVYSLIVDSE-N-RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLR  447 (537)
T ss_pred             CcceEEEEEecCc-c-eEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceee
Confidence            9999999998775 4 344443      8999877 66555544433321            123456667666665555


Q ss_pred             eeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217          295 LAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       295 L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                      ...+.  ....+...++.  ...++.                 ++....+..||..+++.-+.+
T Consensus       448 ~~~~~--~~~~v~~l~~~--~~~il~-----------------s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  448 TLEGR--HVGGVSALALG--KEEILC-----------------SSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             eeccC--CcccEEEeecC--cceEEE-----------------EecCCeeEEEecccCchhhhh
Confidence            55553  11122222222  222332                 344556778888887776654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.77  E-value=3.1e-18  Score=187.03  Aligned_cols=222  Identities=19%  Similarity=0.194  Sum_probs=181.3

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L  145 (767)
                      ........+++.|++|.+..++.+||+...      ++..-.-.+.+++.|||.+..++|..||.|.|||+.+...++.|
T Consensus       468 iRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqf  547 (705)
T KOG0639|consen  468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQF  547 (705)
T ss_pred             eeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecc
Confidence            555667789999999999999999999765      23344456889999999999999999999999999999999999


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCcc
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE  224 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~  224 (767)
                      +||++.+.||..++ ++..|.+|+.|++||.||+++++.+....+.+.|.++.++|++.+|++|..+. +.|......+.
T Consensus       548 qGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k  626 (705)
T KOG0639|consen  548 QGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK  626 (705)
T ss_pred             cCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc
Confidence            99999999999999 99999999999999999999999998888999999999999999999999766 88877765543


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCC
Q 004217          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITP  304 (767)
Q Consensus       225 ~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~sl  304 (767)
                          ..+..|.+.|.++.|.+.|+++++++.++-+..|....--            .++-               .....
T Consensus       627 ----yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa------------siFq---------------skE~S  675 (705)
T KOG0639|consen  627 ----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA------------SIFQ---------------SKESS  675 (705)
T ss_pred             ----eeecccccEEEEEEecccCceeeecCchhhhhhccCcccc------------ceee---------------ccccC
Confidence                3466789999999999999999999986555544331100            1110               01234


Q ss_pred             CceeeEEecCCCEEEEeecCC
Q 004217          305 PFLRPSFVRDDERISLQHTEH  325 (767)
Q Consensus       305 pil~psFSpDg~rIva~~~~~  325 (767)
                      +++.+-.|.|+++|+.+..+.
T Consensus       676 sVlsCDIS~ddkyIVTGSGdk  696 (705)
T KOG0639|consen  676 SVLSCDISFDDKYIVTGSGDK  696 (705)
T ss_pred             cceeeeeccCceEEEecCCCc
Confidence            566677788888888754443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.77  E-value=7.5e-17  Score=171.54  Aligned_cols=251  Identities=14%  Similarity=0.106  Sum_probs=187.3

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ..+++...+...+++|+.|..-.+|+..++    ++.+|+++|+++.||.||.+||+|..+|.|+||+..++.....+..
T Consensus        67 vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~  146 (399)
T KOG0296|consen   67 VFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ  146 (399)
T ss_pred             eEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec
Confidence            555666678999999999999999999987    5789999999999999999999999999999999999998888876


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccc
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET  225 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~  225 (767)
                      .-..+.-+.||| ...+|+.|+.||.+.+|.+.++...+. .+|..++++-.|.|+|+.++++.+++ |++||..++..+
T Consensus       147 e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~  225 (399)
T KOG0296|consen  147 EVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPL  225 (399)
T ss_pred             ccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCcee
Confidence            667888999999 999999999999999999999554444 56999999999999999999999776 999999988653


Q ss_pred             cCCe------------------------------------------------EEecCCCCeEEEEEccCCCe--EEEEEe
Q 004217          226 SSPR------------------------------------------------IVLRTRRSLRAVHFHPHAAP--LLLTAE  255 (767)
Q Consensus       226 ~~~~------------------------------------------------~l~~h~~~VtsVaFSPDG~~--LlaSgs  255 (767)
                      ....                                                ....+...+.+|.|.|....  |++.++
T Consensus       226 ~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~  305 (399)
T KOG0296|consen  226 HKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS  305 (399)
T ss_pred             EEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc
Confidence            2110                                                00011122233333332221  222222


Q ss_pred             ------eCCcCCCCcceeEee---------cC-CCc--cCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCE
Q 004217          256 ------VNDLDSSESSLTLAT---------SP-GYW--RYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDER  317 (767)
Q Consensus       256 ------vwdl~s~~~~~~l~t---------~s-G~~--~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~r  317 (767)
                            +||+..+..+....-         .. .+.  .-....+..|+..++......+|   ...+++-.+++||.++
T Consensus       306 vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~G---H~~~Il~f~ls~~~~~  382 (399)
T KOG0296|consen  306 VDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTG---HQMGILDFALSPQKRL  382 (399)
T ss_pred             ccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEec---CchheeEEEEcCCCcE
Confidence                  677654433221111         11 110  11346678888888887777777   5668888899999999


Q ss_pred             EEEeecCCC
Q 004217          318 ISLQHTEHD  326 (767)
Q Consensus       318 Iva~~~~~d  326 (767)
                      |+....++.
T Consensus       383 vvT~s~D~~  391 (399)
T KOG0296|consen  383 VVTVSDDNT  391 (399)
T ss_pred             EEEecCCCe
Confidence            998665543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.77  E-value=1.3e-18  Score=183.35  Aligned_cols=221  Identities=19%  Similarity=0.277  Sum_probs=176.5

Q ss_pred             CCCCCcceecccccccc-cCCCccCcceeecccccceec-----CCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC-
Q 004217           30 HRNSRLRNVFGLLAQRE-VAPRTKHSSKRLLGETARKCS-----GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCP-  102 (767)
Q Consensus        30 ~r~sk~rnVf~~~~kre-~~~~~~~~sk~~wd~~~~~~~-----~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~-  102 (767)
                      .++...+.||.+....+ +-...+....++||.+...|.     .+.++++.-.  +.+.+++|+.|.+|++||.++++ 
T Consensus       192 c~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~  269 (499)
T KOG0281|consen  192 CRSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEP  269 (499)
T ss_pred             CCcccCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCch
Confidence            45555666666543332 222333456788998876664     2345666665  56699999999999999999983 


Q ss_pred             ---CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe---EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEE
Q 004217          103 ---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (767)
Q Consensus       103 ---L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~---~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrI  176 (767)
                         +..|...|..+.|+  ..++++++.|.++.|||+....   +.+.+.||...|..+.|+   .+++++++.|.+|++
T Consensus       270 l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikv  344 (499)
T KOG0281|consen  270 LNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKV  344 (499)
T ss_pred             hhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEE
Confidence               66999999999998  4699999999999999998654   346778999999999994   579999999999999


Q ss_pred             EECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          177 WNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       177 WDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      |++.++++++++ +|+..|.|+.+  .|+++++|+.|. |++||+..+..++   .+.+|..-|+++.|.  .+.+++++
T Consensus       345 W~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLR---vLeGHEeLvRciRFd--~krIVSGa  417 (499)
T KOG0281|consen  345 WSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR---VLEGHEELVRCIRFD--NKRIVSGA  417 (499)
T ss_pred             Eeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHH---HHhchHHhhhheeec--Cceeeecc
Confidence            999999999996 48999998877  688999998655 9999999999876   889999999999995  45577655


Q ss_pred             e-----eCCcCCCCc
Q 004217          255 E-----VNDLDSSES  264 (767)
Q Consensus       255 s-----vwdl~s~~~  264 (767)
                      -     +||+.....
T Consensus       418 YDGkikvWdl~aald  432 (499)
T KOG0281|consen  418 YDGKIKVWDLQAALD  432 (499)
T ss_pred             ccceEEEEecccccC
Confidence            3     788775443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=2.3e-18  Score=198.30  Aligned_cols=147  Identities=21%  Similarity=0.344  Sum_probs=128.0

Q ss_pred             CCC-CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC--------------------------------C---------
Q 004217          102 PLS-PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT--------------------------------G---------  139 (767)
Q Consensus       102 ~L~-gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t--------------------------------g---------  139 (767)
                      ++. .|.+.|+++.||+||++||+|+.|+.|+||.+..                                .         
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            355 8999999999999999999999999999998744                                0         


Q ss_pred             -------------------eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEc
Q 004217          140 -------------------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH  200 (767)
Q Consensus       140 -------------------~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafS  200 (767)
                                         +++..|+||.+.|..+.|+-  .++|+|++.|+|||||++...+|++.|.|...|+||+|+
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFn  418 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFN  418 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEec
Confidence                               23445679999999999996  789999999999999999999999999999999999999


Q ss_pred             C-CCCEEEEEE-CCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          201 A-SGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       201 P-dG~~LAsgS-dd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      | |.+|+++|+ |++|+||++...+...    ...-..-|++++|.|||++.++++
T Consensus       419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~----W~Dl~~lITAvcy~PdGk~avIGt  470 (712)
T KOG0283|consen  419 PVDDRYFISGSLDGKVRLWSISDKKVVD----WNDLRDLITAVCYSPDGKGAVIGT  470 (712)
T ss_pred             ccCCCcEeecccccceEEeecCcCeeEe----ehhhhhhheeEEeccCCceEEEEE
Confidence            9 557999999 6669999998876543    344458899999999999877754

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=4.5e-17  Score=183.23  Aligned_cols=220  Identities=19%  Similarity=0.189  Sum_probs=176.7

Q ss_pred             cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCC-CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEE
Q 004217           70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSP-PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV  144 (767)
Q Consensus        70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~g-H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~  144 (767)
                      .....+....+|..|+.|..+|.|.+||....    .+.+ |...|-+++|+  +..+.+|+.|+.|..+|++..+....
T Consensus       218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~  295 (484)
T KOG0305|consen  218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS  295 (484)
T ss_pred             CceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh
Confidence            34777788889999999999999999998765    4666 99999999999  77899999999999999998765544


Q ss_pred             -EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCC-CEEEEEEC--Cc-EEEEE
Q 004217          145 -LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASG-ELLAVASG--HK-LYIWR  218 (767)
Q Consensus       145 -L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG-~~LAsgSd--d~-V~VWD  218 (767)
                       +.+|...|..+.|++ +++++++|+.|+.+.|||....+.+.. .+|..+|..++|+|-. .+||+|++  |+ |++||
T Consensus       296 ~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn  374 (484)
T KOG0305|consen  296 TLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN  374 (484)
T ss_pred             hhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence             899999999999999 999999999999999999977666555 5799999999999965 58888873  44 99999


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeec
Q 004217          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEE  298 (767)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg  298 (767)
                      ..++..+.    .......|.+|.|++..+-|+++-+                  |   +...+.+|...+..   ....
T Consensus       375 ~~~g~~i~----~vdtgsQVcsL~Wsk~~kEi~sthG------------------~---s~n~i~lw~~ps~~---~~~~  426 (484)
T KOG0305|consen  375 TNTGARID----SVDTGSQVCSLIWSKKYKELLSTHG------------------Y---SENQITLWKYPSMK---LVAE  426 (484)
T ss_pred             cCCCcEec----ccccCCceeeEEEcCCCCEEEEecC------------------C---CCCcEEEEeccccc---eeee
Confidence            99988755    3455789999999999987877643                  1   22234444433322   2222


Q ss_pred             cCCCCCCceeeEEecCCCEEEE
Q 004217          299 VPLITPPFLRPSFVRDDERISL  320 (767)
Q Consensus       299 ~~~~slpil~psFSpDg~rIva  320 (767)
                      ...+..+++..+.+|||..|+.
T Consensus       427 l~gH~~RVl~la~SPdg~~i~t  448 (484)
T KOG0305|consen  427 LLGHTSRVLYLALSPDGETIVT  448 (484)
T ss_pred             ecCCcceeEEEEECCCCCEEEE
Confidence            3335567778889999999987

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.75  E-value=1.1e-17  Score=181.80  Aligned_cols=178  Identities=18%  Similarity=0.232  Sum_probs=149.0

Q ss_pred             EcCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECC--CCeEEE
Q 004217           78 RDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQ--TGSCLK  143 (767)
Q Consensus        78 sd~g~~LaSgs~DgsIrlWd~~t~-----------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~--tg~~l~  143 (767)
                      ......|++++.|++|.+||+...           .+.+|...|.+++|++ +..+|++++.|+.+.|||++  +.++.+
T Consensus       187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~  266 (422)
T KOG0264|consen  187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH  266 (422)
T ss_pred             cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc
Confidence            344567899999999999999753           2569999999999999 77899999999999999999  566677


Q ss_pred             EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe-EEEee-cCCCCeEEEEEcCCCC-EEEEEECCc-EEEEEc
Q 004217          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSR-DFYRPIASIAFHASGE-LLAVASGHK-LYIWRY  219 (767)
Q Consensus       144 ~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~-~i~~l-~h~~~VtsVafSPdG~-~LAsgSdd~-V~VWDl  219 (767)
                      ..++|.+.|++++|+|.++.+||+|+.|++|.+||+|+-+ ++..+ .|...|..|.|+|+.. .||+++.|+ +.|||+
T Consensus       267 ~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl  346 (422)
T KOG0264|consen  267 SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL  346 (422)
T ss_pred             cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence            8899999999999999999999999999999999999743 44444 5999999999999875 677766555 999999


Q ss_pred             CCCcccc-----------CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          220 NMREETS-----------SPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       220 ~t~~~~~-----------~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ..-...+           ..+.-.+|...|..+.|+|+..+++++..
T Consensus       347 s~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva  393 (422)
T KOG0264|consen  347 SRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA  393 (422)
T ss_pred             cccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence            7543322           12455678999999999999999888776

>PTZ00420 coronin; Provisional

Probab=99.75  E-value=1.4e-16  Score=184.44  Aligned_cols=182  Identities=9%  Similarity=0.013  Sum_probs=135.8

Q ss_pred             ceEEEEEEcC-CCEEEEEeCCCeEEEEeCCCC------------CCCCCCCCeEEEEECCCCCe-EEEEeCCCeEEEEEC
Q 004217           71 SQIFEAGRDA-RRGLASWVEAESLHHLRPKYC------------PLSPPPRSTIAAAFSPDGKT-LASTHGDHTVKIIDC  136 (767)
Q Consensus        71 s~~~vA~sd~-g~~LaSgs~DgsIrlWd~~t~------------~L~gH~~sVtsVaFSpDG~~-LASgs~DGtVrVWDl  136 (767)
                      ....+++... +..|++++.|++|++||+...            .+.+|...|.+++|+|++.. |++++.|++|+|||+
T Consensus        76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl  155 (568)
T PTZ00420         76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI  155 (568)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEEC
Confidence            3556666654 789999999999999998653            25689999999999998875 578999999999999


Q ss_pred             CCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeE-----EEEEcCCCCEEEEEE
Q 004217          137 QTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIA-----SIAFHASGELLAVAS  210 (767)
Q Consensus       137 ~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~Vt-----sVafSPdG~~LAsgS  210 (767)
                      .+++.+..+. |...|.+++|+| ++.+|++++.|++|+|||+++++.+..+. |.+.+.     ...|++++.+|++++
T Consensus       156 ~tg~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG  233 (568)
T PTZ00420        156 ENEKRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTG  233 (568)
T ss_pred             CCCcEEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEE
Confidence            9998877776 667899999999 89999999999999999999999887764 655443     234568988888876


Q ss_pred             CC-----cEEEEEcCCCcc-ccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          211 GH-----KLYIWRYNMREE-TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       211 dd-----~V~VWDl~t~~~-~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .+     .|+|||++.... +. ...+..+...+...-..++|.+++++.+
T Consensus       234 ~d~~~~R~VkLWDlr~~~~pl~-~~~ld~~~~~L~p~~D~~tg~l~lsGkG  283 (568)
T PTZ00420        234 FSKNNMREMKLWDLKNTTSALV-TMSIDNASAPLIPHYDESTGLIYLIGKG  283 (568)
T ss_pred             cCCCCccEEEEEECCCCCCceE-EEEecCCccceEEeeeCCCCCEEEEEEC
Confidence            33     399999996432 22 1111222233333333445665555444

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.75  E-value=2.9e-17  Score=171.46  Aligned_cols=244  Identities=16%  Similarity=0.175  Sum_probs=186.5

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----------------------CCCCCCCCeEEEEECCCCCeEEEEeCCC
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----------------------PLSPPPRSTIAAAFSPDGKTLASTHGDH  129 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----------------------~L~gH~~sVtsVaFSpDG~~LASgs~DG  129 (767)
                      ..+.+++.+|..+++|+.|.+|++.|++..                      +|..|.+.|+++.|+|....|++|+.|+
T Consensus       115 cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~  194 (430)
T KOG0640|consen  115 CRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDN  194 (430)
T ss_pred             eeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCC
Confidence            566778999999999999999999998620                      3568999999999999999999999999


Q ss_pred             eEEEEECCCCeEEEEE--ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee----cCCCCeEEEEEcCCC
Q 004217          130 TVKIIDCQTGSCLKVL--HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAFHASG  203 (767)
Q Consensus       130 tVrVWDl~tg~~l~~L--~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l----~h~~~VtsVafSPdG  203 (767)
                      +|+++|+..-...+.+  ......|.++.||| .+++++.|....++++||+.+.+|...-    +|...|+++.+++.|
T Consensus       195 tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~  273 (430)
T KOG0640|consen  195 TVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG  273 (430)
T ss_pred             eEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc
Confidence            9999999754322222  22456899999999 9999999999999999999999998763    488999999999999


Q ss_pred             CEEEEEECCc-EEEEEcCCCccccCCeEEecC-CCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeec--CCC
Q 004217          204 ELLAVASGHK-LYIWRYNMREETSSPRIVLRT-RRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATS--PGY  274 (767)
Q Consensus       204 ~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h-~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~--sG~  274 (767)
                      ++.++++.|+ |++||--..+++.  .....| ...|.+..|..+|++++++|.     .|.+.++.....+...  +|.
T Consensus       274 ~lYvTaSkDG~IklwDGVS~rCv~--t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgr  351 (430)
T KOG0640|consen  274 SLYVTASKDGAIKLWDGVSNRCVR--TIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGR  351 (430)
T ss_pred             cEEEEeccCCcEEeeccccHHHHH--HHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccc
Confidence            9999999766 9999988777765  223345 567999999999999999876     8888876655443321  121


Q ss_pred             ---------------ccCC---CCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEE
Q 004217          275 ---------------WRYP---PPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (767)
Q Consensus       275 ---------------~~~p---~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva  320 (767)
                                     +-+|   ...++.|+....+...+..-  ....++-+..-||.....+.
T Consensus       352 q~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl--gHn~a~R~i~HSP~~p~FmT  413 (430)
T KOG0640|consen  352 QKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL--GHNGAVRWIVHSPVEPAFMT  413 (430)
T ss_pred             hhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc--CCCCCceEEEeCCCCCceee
Confidence                           1122   25577788777666555432  23444445555665555554

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.75  E-value=7.5e-17  Score=168.11  Aligned_cols=167  Identities=23%  Similarity=0.287  Sum_probs=137.2

Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECC-CCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC
Q 004217          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ-TGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS  180 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~-tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~  180 (767)
                      .+.+|++.|..+.|+|+|.+||+|+.|..|.+|++. .-+....+++|++.|..+.|.+ +++.+++++.|++|+.||++
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~~  120 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWDAE  120 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEEEecc
Confidence            578999999999999999999999999999999964 3455678899999999999999 99999999999999999999


Q ss_pred             CCeEEEeec-CCCCeEEEEEcCCCC-EEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe--
Q 004217          181 TAECIGSRD-FYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE--  255 (767)
Q Consensus       181 tg~~i~~l~-h~~~VtsVafSPdG~-~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs--  255 (767)
                      +|++++.+. |.+-|+++.-+.-|. ++.++++|+ +++||+++...++    ....+..++++.|..++..+++++=  
T Consensus       121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~----t~~~kyqltAv~f~d~s~qv~sggIdn  196 (338)
T KOG0265|consen  121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK----TFENKYQLTAVGFKDTSDQVISGGIDN  196 (338)
T ss_pred             cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh----ccccceeEEEEEecccccceeeccccC
Confidence            999999865 778888887554554 556666666 9999999887655    3344678999999999997777653  


Q ss_pred             ---eCCcCCCCcceeEeecCCCcc
Q 004217          256 ---VNDLDSSESSLTLATSPGYWR  276 (767)
Q Consensus       256 ---vwdl~s~~~~~~l~t~sG~~~  276 (767)
                         +||++..+.   +.++.||.+
T Consensus       197 ~ikvWd~r~~d~---~~~lsGh~D  217 (338)
T KOG0265|consen  197 DIKVWDLRKNDG---LYTLSGHAD  217 (338)
T ss_pred             ceeeeccccCcc---eEEeecccC
Confidence               777776555   344556643

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.74  E-value=8.5e-18  Score=191.49  Aligned_cols=182  Identities=19%  Similarity=0.240  Sum_probs=157.9

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCC---C----CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEEccCCC
Q 004217           79 DARRGLASWVEAESLHHLRPKY---C----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t---~----~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~  150 (767)
                      -....|++++..|.|.+||+..   .    .+..|++.|++++|++ ...+|++|+.||+||+||++..+...++.+...
T Consensus        98 ~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSE  177 (839)
T KOG0269|consen   98 LYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSE  177 (839)
T ss_pred             chhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccch
Confidence            4567899999999999999986   2    2569999999999999 778999999999999999999988889999889


Q ss_pred             CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe-EEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccC
Q 004217          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS  227 (767)
Q Consensus       151 ~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~-~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~  227 (767)
                      .|..|.|+|..++.|+++...|.+++||++... +... ..|.++|.|+.|+|++.+||+|+.|+ |+|||+.+.+..  
T Consensus       178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~--  255 (839)
T KOG0269|consen  178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK--  255 (839)
T ss_pred             hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc--
Confidence            999999999889999999999999999999754 3444 45999999999999999999999776 999999876542  


Q ss_pred             CeEEecCCCCeEEEEEccCCCeEEEEEe--------eCCcCCC
Q 004217          228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE--------VNDLDSS  262 (767)
Q Consensus       228 ~~~l~~h~~~VtsVaFSPDG~~LlaSgs--------vwdl~s~  262 (767)
                      .........+|..|.|-|+..+.+++++        +||++..
T Consensus       256 ~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  256 PKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             ceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence            2344556789999999999999888776        8998853

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.74  E-value=9.5e-18  Score=180.45  Aligned_cols=238  Identities=16%  Similarity=0.148  Sum_probs=185.6

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH  148 (767)
                      +.+-.+...|++++.|..|++|+....      .|.+..+.|++++|.++++++++++.|+.+++|++...+...+|.||
T Consensus       181 v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGH  260 (459)
T KOG0288|consen  181 VEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGH  260 (459)
T ss_pred             eEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhccc
Confidence            445567788999999999999998765      46678889999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC-cEEEEEcCCCccccC
Q 004217          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSS  227 (767)
Q Consensus       149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd-~V~VWDl~t~~~~~~  227 (767)
                      ++.|+++.|.. ....+++|+.|.+|++||+.+..|.++.-....+..|+.+  +..+++|-.| +|++||.+...... 
T Consensus       261 tdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~-  336 (459)
T KOG0288|consen  261 TDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR-  336 (459)
T ss_pred             ccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceee-
Confidence            99999999988 5555999999999999999999999998777777777765  4456666544 49999999987644 


Q ss_pred             CeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCce
Q 004217          228 PRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL  307 (767)
Q Consensus       228 ~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil  307 (767)
                        .... .+.|+++..++++..+++++..+.++..+..       ++      .++          +..+.+......-|
T Consensus       337 --sv~~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlR-------t~------eI~----------~~~sA~g~k~asDw  390 (459)
T KOG0288|consen  337 --SVPL-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLR-------TK------EIR----------QTFSAEGFKCASDW  390 (459)
T ss_pred             --Eeec-CcceeeEeeccCCeEEeeecCCCceeeeecc-------cc------cEE----------EEeecccccccccc
Confidence              3333 4599999999999998888665544422210       00      000          11111111111225


Q ss_pred             -eeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217          308 -RPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS  359 (767)
Q Consensus       308 -~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~  359 (767)
                       .+.||||++++++                 +|+...+..|+..+++.+..++
T Consensus       391 trvvfSpd~~YvaA-----------------GS~dgsv~iW~v~tgKlE~~l~  426 (459)
T KOG0288|consen  391 TRVVFSPDGSYVAA-----------------GSADGSVYIWSVFTGKLEKVLS  426 (459)
T ss_pred             ceeEECCCCceeee-----------------ccCCCcEEEEEccCceEEEEec
Confidence             6899999999997                 4566679999999999999885

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.74  E-value=3.2e-17  Score=174.81  Aligned_cols=183  Identities=17%  Similarity=0.303  Sum_probs=153.6

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC--------------------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECC
Q 004217           79 DARRGLASWVEAESLHHLRPKYC--------------------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQ  137 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~--------------------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~  137 (767)
                      .+....++|++.|.|++|++...                    ++.+|...=++++||| .-..|++|..-+.|++|...
T Consensus       163 ~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~  242 (440)
T KOG0302|consen  163 GNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPS  242 (440)
T ss_pred             CCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeec
Confidence            35677889999999999998531                    2558998899999999 33357788888899999998


Q ss_pred             CCeEE---EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC---eEEEeecCCCCeEEEEEcCCCCEEEEEEC
Q 004217          138 TGSCL---KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA---ECIGSRDFYRPIASIAFHASGELLAVASG  211 (767)
Q Consensus       138 tg~~l---~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg---~~i~~l~h~~~VtsVafSPdG~~LAsgSd  211 (767)
                      +|.-.   ..|.+|+..|-.++|+|.....|+|||-||+|+|||++.+   .++....|.+.|+.|.|+.+-.+||+|+|
T Consensus       243 ~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~D  322 (440)
T KOG0302|consen  243 TGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGD  322 (440)
T ss_pred             cCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCC
Confidence            87633   4567899999999999988899999999999999999988   55666679999999999999889999998


Q ss_pred             Cc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCC
Q 004217          212 HK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDS  261 (767)
Q Consensus       212 d~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s  261 (767)
                      ++ ++|||+++.+...+...+..|..+|++|.|+|.....+++++      +||+..
T Consensus       323 dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  323 DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             CceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            77 999999988776667788999999999999997765555443      788763

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.73  E-value=5.1e-16  Score=159.44  Aligned_cols=188  Identities=17%  Similarity=0.221  Sum_probs=160.1

Q ss_pred             EEEEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217           73 IFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        73 ~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L  145 (767)
                      -.++...+|..|++++-|+++++|+++..      ...+|.+.|-.++|+| ...+|++++.|.+|++||++.+++....
T Consensus        24 ~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i  103 (313)
T KOG1407|consen   24 HSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARI  103 (313)
T ss_pred             eEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEe
Confidence            34677789999999999999999999765      3569999999999999 7789999999999999999999999888


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCcc
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREE  224 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~  224 (767)
                      ....+.+ -+.|+| ++++++.++.|..|.+.|.++.+.+...+....+..++|+-++.+++...+ +.|.|......+.
T Consensus       104 ~~~~eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkp  181 (313)
T KOG1407|consen  104 ETKGENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKP  181 (313)
T ss_pred             eccCcce-EEEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccc
Confidence            7555554 578999 999999999999999999999999999888889999999977776555554 6699998887665


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcc
Q 004217          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESS  265 (767)
Q Consensus       225 ~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~  265 (767)
                      +.   .+..|.....+|.|+|+|+++++++.     .||++..-+.
T Consensus       182 v~---si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~  224 (313)
T KOG1407|consen  182 VQ---SIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICE  224 (313)
T ss_pred             cc---ccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhh
Confidence            44   78899999999999999999887654     8888754443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=4.3e-17  Score=182.07  Aligned_cols=180  Identities=16%  Similarity=0.181  Sum_probs=158.6

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L  145 (767)
                      ..+++..+..-.+.+.+.|-+|++||-+..     .+.||..-|.+++|+| |.+.+|+++-|++||||.+.+..+..+|
T Consensus       100 IR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl  179 (794)
T KOG0276|consen  100 IRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL  179 (794)
T ss_pred             eeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee
Confidence            677888888999999999999999999864     6889999999999999 8899999999999999999999999999


Q ss_pred             ccCCCCcEEEEEccC-CCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCC
Q 004217          146 HGHRRTPWVVRFHPL-NPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMR  222 (767)
Q Consensus       146 ~gH~~~V~sLafsP~-dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~  222 (767)
                      +||...|+++.|-+. +..+|+||+.|.+|+|||..+..|+.+++ |...|..+.|+|.-.++++|+.|+ ++||+..+-
T Consensus       180 ~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty  259 (794)
T KOG0276|consen  180 EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY  259 (794)
T ss_pred             eccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce
Confidence            999999999999872 23499999999999999999999999986 999999999999999999999766 999998887


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       223 ~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      +...   .+.-....|++|+-.+.+..++++-
T Consensus       260 ~lE~---tLn~gleRvW~I~~~k~~~~i~vG~  288 (794)
T KOG0276|consen  260 KLEK---TLNYGLERVWCIAAHKGDGKIAVGF  288 (794)
T ss_pred             ehhh---hhhcCCceEEEEeecCCCCeEEEec
Confidence            6544   3444567889999888877655543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=1.1e-16  Score=180.12  Aligned_cols=179  Identities=18%  Similarity=0.258  Sum_probs=160.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEE
Q 004217           80 ARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~s  154 (767)
                      ....+.+|+.|+.|..+|+...     .+.+|...|..++|++|+++||+|+.|+.|.|||......+..+..|++.|.+
T Consensus       269 ~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA  348 (484)
T KOG0305|consen  269 NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKA  348 (484)
T ss_pred             cCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeE
Confidence            4778889999999999999765     37789999999999999999999999999999999888888999999999999


Q ss_pred             EEEccCCCcEEEEEe--CCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE---CCcEEEEEcCCCccccCCe
Q 004217          155 VRFHPLNPTIIASGS--LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS---GHKLYIWRYNMREETSSPR  229 (767)
Q Consensus       155 LafsP~dg~lLaSgS--~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS---dd~V~VWDl~t~~~~~~~~  229 (767)
                      ++|+|....+||+|+  .|+.|++||..+++.+..+.....|.++.|++..+-|+++.   ++.|.||++.+.+.+.   
T Consensus       349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~---  425 (484)
T KOG0305|consen  349 LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVA---  425 (484)
T ss_pred             eeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceee---
Confidence            999998899999964  69999999999999999999999999999999998777665   3449999999877554   


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEeeCCcCC
Q 004217          230 IVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDS  261 (767)
Q Consensus       230 ~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s  261 (767)
                      .+.+|...|..++++|||..+++++.+-.++.
T Consensus       426 ~l~gH~~RVl~la~SPdg~~i~t~a~DETlrf  457 (484)
T KOG0305|consen  426 ELLGHTSRVLYLALSPDGETIVTGAADETLRF  457 (484)
T ss_pred             eecCCcceeEEEEECCCCCEEEEecccCcEEe
Confidence            88999999999999999999988877444443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.73  E-value=3.8e-16  Score=163.79  Aligned_cols=182  Identities=19%  Similarity=0.201  Sum_probs=153.2

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCC--eEEEEeCCCeEEEEECCCCeEEEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGK--TLASTHGDHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~--~LASgs~DGtVrVWDl~tg~~l~~L  145 (767)
                      ..++|.  ++.++++|+.|.+|++||+...    .+..|.+.|+++.|.++-.  .|++|+.||.|.+|+.....++..+
T Consensus        46 itavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~sl  123 (362)
T KOG0294|consen   46 ITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSL  123 (362)
T ss_pred             eeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeee
Confidence            455555  9999999999999999999875    5778999999999999665  8999999999999999999999999


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccc
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREET  225 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~  225 (767)
                      ++|++.|+.++.|| .+++.++.+.|+.+++||+-.|+.-..+......+.+.|+|.|.+++.+..++|-+|.+.+....
T Consensus       124 K~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~  202 (362)
T KOG0294|consen  124 KAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVF  202 (362)
T ss_pred             cccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHh
Confidence            99999999999999 99999999999999999999998877766666666799999999999999999999999887654


Q ss_pred             cCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004217          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (767)
Q Consensus       226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s  261 (767)
                      .    .......+.++.|-..+ .++++++     .||.+.
T Consensus       203 ~----~i~~~~r~l~~~~l~~~-~L~vG~d~~~i~~~D~ds  238 (362)
T KOG0294|consen  203 R----EIENPKRILCATFLDGS-ELLVGGDNEWISLKDTDS  238 (362)
T ss_pred             h----hhhccccceeeeecCCc-eEEEecCCceEEEeccCC
Confidence            3    12223557777777444 4666655     455554

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.73  E-value=2.7e-16  Score=178.67  Aligned_cols=245  Identities=17%  Similarity=0.203  Sum_probs=191.7

Q ss_pred             cceeecccccceec---CCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEe
Q 004217           54 SSKRLLGETARKCS---GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTH  126 (767)
Q Consensus        54 ~sk~~wd~~~~~~~---~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs  126 (767)
                      .+-++|......|.   .....++..+.+++..++.|...|.+.++|+...    +...|.+.|+.++.+||++.+++|+
T Consensus       394 ~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~s  473 (888)
T KOG0306|consen  394 ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGS  473 (888)
T ss_pred             CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEec
Confidence            56788987765554   2234677778899999999999999999999875    4679999999999999999999999


Q ss_pred             CCCeEEEEECCC-----CeEEE--EEc-----cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCC
Q 004217          127 GDHTVKIIDCQT-----GSCLK--VLH-----GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRP  193 (767)
Q Consensus       127 ~DGtVrVWDl~t-----g~~l~--~L~-----gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~  193 (767)
                      .|.+|++||+.-     |...+  .++     .-...|.|++++| |+++|+.+-.|++|++|-+.+-+-... ++|.-+
T Consensus       474 aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLP  552 (888)
T KOG0306|consen  474 ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLP  552 (888)
T ss_pred             CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccc
Confidence            999999999741     21111  111     2356899999999 999999999999999999999887655 689999


Q ss_pred             eEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCC--CcceeEee
Q 004217          194 IASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSS--ESSLTLAT  270 (767)
Q Consensus       194 VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~--~~~~~l~t  270 (767)
                      |.|+..+||++++++|+.|+ |+||-++-+.+-+   .+.+|.+.|.+|.|-|+...+++++++-.++.|  +....+..
T Consensus       553 V~smDIS~DSklivTgSADKnVKiWGLdFGDCHK---S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~  629 (888)
T KOG0306|consen  553 VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK---SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK  629 (888)
T ss_pred             eeEEeccCCcCeEEeccCCCceEEeccccchhhh---hhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhhee
Confidence            99999999999999999877 9999999998655   788999999999999988877777776665555  33445555


Q ss_pred             cCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCce
Q 004217          271 SPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL  307 (767)
Q Consensus       271 ~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil  307 (767)
                      +.||..   .+-+++.  ++++..+.+++.+.++++|
T Consensus       630 L~~H~~---ev~cLav--~~~G~~vvs~shD~sIRlw  661 (888)
T KOG0306|consen  630 LDGHHS---EVWCLAV--SPNGSFVVSSSHDKSIRLW  661 (888)
T ss_pred             eccchh---eeeeeEE--cCCCCeEEeccCCceeEee
Confidence            666632   2333333  4455556666555555555

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.72  E-value=3.6e-15  Score=155.43  Aligned_cols=250  Identities=15%  Similarity=0.175  Sum_probs=168.7

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeE-EEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEE
Q 004217           82 RGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (767)
Q Consensus        82 ~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~L-ASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLa  156 (767)
                      ..+++.+.|+.|++||..+++    +..+ ..+.+++|+||++.+ ++++.|+.|++||..+++.+..+..+.. +..+.
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~   79 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA   79 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence            456788899999999998763    3333 447789999999977 5667889999999999988877765544 56789


Q ss_pred             EccCCCcEE-EEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc--EEEEEcCCCccccCCeEEec
Q 004217          157 FHPLNPTII-ASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLR  233 (767)
Q Consensus       157 fsP~dg~lL-aSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~--V~VWDl~t~~~~~~~~~l~~  233 (767)
                      |+| +++.+ +++..|+.|++||+.+.+.+..+.....+.+++|+|+|+++++++.+.  +.+||.++.+...   .. .
T Consensus        80 ~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~---~~-~  154 (300)
T TIGR03866        80 LHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD---NV-L  154 (300)
T ss_pred             ECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE---EE-E
Confidence            999 66655 555678999999999988888777666678899999999999888653  7888988765433   11 2


Q ss_pred             CCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeEeecC-C----C-----ccC-C-----------CCeEEEe
Q 004217          234 TRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLATSP-G----Y-----WRY-P-----------PPVICMA  285 (767)
Q Consensus       234 h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~~~~l~t~s-G----~-----~~~-p-----------~~~v~l~  285 (767)
                      ....+..++|+|+|+++++++.      +||+..++....+.... +    .     ..+ +           ...+.++
T Consensus       155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~  234 (300)
T TIGR03866       155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV  234 (300)
T ss_pred             cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence            2345678999999998876543      78887654433222100 0    0     000 1           1122333


Q ss_pred             cCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217          286 GAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       286 ~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                      +..+.......    ......+.++|+||+++|++..                .....+..||..+++.-..+
T Consensus       235 d~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~~~~----------------~~~~~i~v~d~~~~~~~~~~  287 (300)
T TIGR03866       235 DAKTYEVLDYL----LVGQRVWQLAFTPDEKYLLTTN----------------GVSNDVSVIDVAALKVIKSI  287 (300)
T ss_pred             ECCCCcEEEEE----EeCCCcceEEECCCCCEEEEEc----------------CCCCeEEEEECCCCcEEEEE
Confidence            32221111110    0112355788999999988611                12345889999998876666

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.72  E-value=1e-16  Score=164.52  Aligned_cols=217  Identities=17%  Similarity=0.225  Sum_probs=171.9

Q ss_pred             CCCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE--EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEE
Q 004217          101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK--VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN  178 (767)
Q Consensus       101 ~~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~--~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWD  178 (767)
                      .++.+|...|.+|+|+.+|..|++|+.|+++++|+++..+...  ..++|.+.|..++|+|.+.++|++++.|++|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            4677899999999999999999999999999999998876543  34789999999999998999999999999999999


Q ss_pred             CCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 004217          179 ASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN  257 (767)
Q Consensus       179 l~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvw  257 (767)
                      ++.++++..+.....-.-+.|+|+|+++++++. |.|.+.|.++.+...    .......+..++|+-++..++.+.+..
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~----~~~~~~e~ne~~w~~~nd~Fflt~GlG  169 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN----EEQFKFEVNEISWNNSNDLFFLTNGLG  169 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceee----hhcccceeeeeeecCCCCEEEEecCCc
Confidence            999999999888877778999999999999984 559999999876543    233455788999998888777665433


Q ss_pred             CcCC--CCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccc
Q 004217          258 DLDS--SESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQS  335 (767)
Q Consensus       258 dl~s--~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~  335 (767)
                      .+..  ......+.+.                            ...+..++...|+|+|+++++               
T Consensus       170 ~v~ILsypsLkpv~si----------------------------~AH~snCicI~f~p~GryfA~---------------  206 (313)
T KOG1407|consen  170 CVEILSYPSLKPVQSI----------------------------KAHPSNCICIEFDPDGRYFAT---------------  206 (313)
T ss_pred             eEEEEecccccccccc----------------------------ccCCcceEEEEECCCCceEee---------------
Confidence            2221  1111111111                            223455667899999999998               


Q ss_pred             cccCCceeeeeccCCCCceeeeeccCC-CCCC
Q 004217          336 LRSSSSVRLLTYSTPSGQYELVLSPIA-SNRS  366 (767)
Q Consensus       336 ~~ss~~~~l~~~~~~~~q~~~~~~p~~-p~~~  366 (767)
                        +++...+-.||.+-.-++++|+-+| |.|.
T Consensus       207 --GsADAlvSLWD~~ELiC~R~isRldwpVRT  236 (313)
T KOG1407|consen  207 --GSADALVSLWDVDELICERCISRLDWPVRT  236 (313)
T ss_pred             --ccccceeeccChhHhhhheeeccccCceEE
Confidence              3444567789999999999999888 6653

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.72  E-value=8.1e-17  Score=182.90  Aligned_cols=188  Identities=18%  Similarity=0.242  Sum_probs=165.4

Q ss_pred             EEEEEEcCCCEEEEEeCCCeEEEEeCCCC----------------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEEC
Q 004217           73 IFEAGRDARRGLASWVEAESLHHLRPKYC----------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC  136 (767)
Q Consensus        73 ~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----------------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl  136 (767)
                      -.++...++...++++.|++|++||.+..                +...-+..|.|+++||||++||.+--|.+|+||-+
T Consensus       458 Wsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyfl  537 (888)
T KOG0306|consen  458 WSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFL  537 (888)
T ss_pred             eeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEe
Confidence            34556788999999999999999998532                11134567999999999999999999999999999


Q ss_pred             CCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-E
Q 004217          137 QTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-L  214 (767)
Q Consensus       137 ~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V  214 (767)
                      ++-+....+-||+-+|.++..+| +++++++||.|++|++|-+.-|.|-+. +.|.+.|.++.|-|+..++.+++.|+ |
T Consensus       538 DtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kv  616 (888)
T KOG0306|consen  538 DTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKV  616 (888)
T ss_pred             cceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceE
Confidence            99999999999999999999999 999999999999999999999999887 57999999999999988888888655 9


Q ss_pred             EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCc
Q 004217          215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSES  264 (767)
Q Consensus       215 ~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~  264 (767)
                      +-||-...+.++   .+.+|...|++++.+|+|.++++++.+..++-|+.
T Consensus       617 KqWDg~kFe~iq---~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~  663 (888)
T KOG0306|consen  617 KQWDGEKFEEIQ---KLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER  663 (888)
T ss_pred             Eeechhhhhhhe---eeccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence            999998888665   88999999999999999998888877666665543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.71  E-value=3.5e-16  Score=169.27  Aligned_cols=193  Identities=15%  Similarity=0.127  Sum_probs=168.1

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ...+-.......+.+|..|+.+-++|....    .+.||...|+.+.|+++...+++++.|..|+||......+......
T Consensus       222 i~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~  301 (506)
T KOG0289|consen  222 ITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRP  301 (506)
T ss_pred             eeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccc
Confidence            334444444688999999999999999876    4789999999999999999999999999999999988777788889


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCC---CCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCc
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGELLAVASGHK-LYIWRYNMRE  223 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~---~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~  223 (767)
                      |..+|+.+..+| .+++|++++.|++..+.|++++.++....+.   -.+++.+|||||.+|.+|..|+ |+|||+..+.
T Consensus       302 h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~  380 (506)
T KOG0289|consen  302 HEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT  380 (506)
T ss_pred             ccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc
Confidence            999999999999 9999999999999999999999988876553   3589999999999999999776 9999999888


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004217          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL  268 (767)
Q Consensus       224 ~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l  268 (767)
                      ...   .+.+|.++|.+|+|+-+|.||++++.     .||++......++
T Consensus       381 ~~a---~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~  427 (506)
T KOG0289|consen  381 NVA---KFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI  427 (506)
T ss_pred             ccc---cCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee
Confidence            544   78889999999999999999999876     7888865544333

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.71  E-value=3.6e-16  Score=170.16  Aligned_cols=184  Identities=19%  Similarity=0.271  Sum_probs=153.5

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC--------------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCe---
Q 004217           79 DARRGLASWVEAESLHHLRPKYC--------------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS---  140 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~--------------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~---  140 (767)
                      .+...+++.+..+.|.+||....              +|.+|...-.++.|++ ..-.|++++.|++|.+||+....   
T Consensus       135 Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~  214 (422)
T KOG0264|consen  135 QNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED  214 (422)
T ss_pred             CCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC
Confidence            35567778899999999998642              4678999889999999 55689999999999999996532   


Q ss_pred             ----EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC--CeEEEe-ecCCCCeEEEEEcCCCC-EEEEEECC
Q 004217          141 ----CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST--AECIGS-RDFYRPIASIAFHASGE-LLAVASGH  212 (767)
Q Consensus       141 ----~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t--g~~i~~-l~h~~~VtsVafSPdG~-~LAsgSdd  212 (767)
                          ....+.+|...|..++|++.+.++|++++.|+.+.|||+++  .++.+. ..|...|+|++|+|-+. .||+|+.|
T Consensus       215 ~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D  294 (422)
T KOG0264|consen  215 KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSAD  294 (422)
T ss_pred             ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCC
Confidence                35678999999999999999999999999999999999995  333333 35899999999999765 78888855


Q ss_pred             c-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCc
Q 004217          213 K-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSES  264 (767)
Q Consensus       213 ~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~  264 (767)
                      + |++||+|+.+.  +...+.+|...|..|.|||+...++++++      +||+.....
T Consensus       295 ~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~  351 (422)
T KOG0264|consen  295 KTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE  351 (422)
T ss_pred             CcEEEeechhccc--CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence            5 99999998776  56788999999999999999998888776      888875443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.71  E-value=8.9e-16  Score=158.05  Aligned_cols=224  Identities=13%  Similarity=0.067  Sum_probs=175.3

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ...+....+|..|++++.|.+..+|-...+    ++.||++.|+|++.+-+.++|++|+.|.++++||+++|+++..++ 
T Consensus        13 lTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-   91 (327)
T KOG0643|consen   13 LTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-   91 (327)
T ss_pred             cceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-
Confidence            344556679999999999999999998665    688999999999999999999999999999999999999999987 


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeC-----CCeEEEEECCC-------CeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSL-----DHEVRLWNAST-------AECIGS-RDFYRPIASIAFHASGELLAVASGHK-  213 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~-----DGtVrIWDl~t-------g~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-  213 (767)
                      -...|..+.|++ ++++++.+..     .+.|.++|++.       .++... ..+.+.++.+-|+|.+++|++|.+++ 
T Consensus        92 ~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~  170 (327)
T KOG0643|consen   92 TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS  170 (327)
T ss_pred             cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCc
Confidence            467899999999 7777776654     46799999983       444444 44778999999999999999999766 


Q ss_pred             EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCC
Q 004217          214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAH  288 (767)
Q Consensus       214 V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~  288 (767)
                      |.+||++++.+..  .....|...|+.++|++|..++++++.     +||+++.+...++.                   
T Consensus       171 is~~da~~g~~~v--~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-------------------  229 (327)
T KOG0643|consen  171 ISIYDARTGKELV--DSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-------------------  229 (327)
T ss_pred             EEEEEcccCceee--echhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-------------------
Confidence            9999999987643  234568889999999999998887665     55655433222111                   


Q ss_pred             CCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcc
Q 004217          289 SSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATR  331 (767)
Q Consensus       289 Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~  331 (767)
                                   ..-|+...+++|--..|+++..++.-.++.
T Consensus       230 -------------te~PvN~aaisP~~d~VilgGGqeA~dVTT  259 (327)
T KOG0643|consen  230 -------------TERPVNTAAISPLLDHVILGGGQEAMDVTT  259 (327)
T ss_pred             -------------ecccccceecccccceEEecCCceeeeeee
Confidence                         112444567777777888877666544443

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=1.6e-17  Score=187.95  Aligned_cols=192  Identities=19%  Similarity=0.284  Sum_probs=164.5

Q ss_pred             ecccccceecCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEE
Q 004217           58 LLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKI  133 (767)
Q Consensus        58 ~wd~~~~~~~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrV  133 (767)
                      +|+.....+. .-..-+..+....+.+++|.+|.++.+|....-    .|.+|...|.++.|+++..+|+.|+.||+||+
T Consensus        18 ~~~~~~~~~h-saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~   96 (825)
T KOG0267|consen   18 VWDTREFVAH-SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKV   96 (825)
T ss_pred             cccchhhhhh-hhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceee
Confidence            5665544443 111223334667889999999999999987643    47899999999999999999999999999999


Q ss_pred             EECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECC
Q 004217          134 IDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH  212 (767)
Q Consensus       134 WDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd  212 (767)
                      ||++.++.+++|.||...+..+.|+| -+.++++|+.|+.+++||++...|.+.++ |...|..+.|+|+|++++.+++|
T Consensus        97 wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed  175 (825)
T KOG0267|consen   97 WDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGED  175 (825)
T ss_pred             eehhhhhhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCc
Confidence            99999999999999999999999999 88999999999999999999888888876 78889999999999999999986


Q ss_pred             c-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          213 K-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       213 ~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      . ++|||+..++...   .+..|...+.++.|+|..- |+++++
T Consensus       176 ~tvki~d~~agk~~~---ef~~~e~~v~sle~hp~e~-Lla~Gs  215 (825)
T KOG0267|consen  176 NTVKIWDLTAGKLSK---EFKSHEGKVQSLEFHPLEV-LLAPGS  215 (825)
T ss_pred             ceeeeeccccccccc---ccccccccccccccCchhh-hhccCC
Confidence            6 9999999998755   6778999999999999876 555554

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.71  E-value=1.8e-15  Score=158.02  Aligned_cols=220  Identities=15%  Similarity=0.178  Sum_probs=158.5

Q ss_pred             eEEEEEEc-CCCEEEEEeCCCeEEEEeCCCC-C-----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEE
Q 004217           72 QIFEAGRD-ARRGLASWVEAESLHHLRPKYC-P-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV  144 (767)
Q Consensus        72 ~~~vA~sd-~g~~LaSgs~DgsIrlWd~~t~-~-----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~  144 (767)
                      ...++++. ....++.++.|++||+|+++.. .     ...|.++|.+++|+.||..+++|+.|+.+++||+.+++ +..
T Consensus        30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~  108 (347)
T KOG0647|consen   30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQ  108 (347)
T ss_pred             hheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eee
Confidence            44455655 5666668999999999999863 2     45799999999999999999999999999999999995 667


Q ss_pred             EccCCCCcEEEEEccCCCc--EEEEEeCCCeEEEEECCCCeEEEeecCC-------------------------------
Q 004217          145 LHGHRRTPWVVRFHPLNPT--IIASGSLDHEVRLWNASTAECIGSRDFY-------------------------------  191 (767)
Q Consensus       145 L~gH~~~V~sLafsP~dg~--lLaSgS~DGtVrIWDl~tg~~i~~l~h~-------------------------------  191 (767)
                      +..|.++|..+.|-+ ...  .|++||.|++|+.||.+...++..+...                               
T Consensus       109 v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~  187 (347)
T KOG0647|consen  109 VAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPP  187 (347)
T ss_pred             eeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCc
Confidence            788999999999987 555  8999999999999999987664443221                               


Q ss_pred             -----------CCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCccccCCeEEecCCC---------CeEEEEEccCCCeE
Q 004217          192 -----------RPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRR---------SLRAVHFHPHAAPL  250 (767)
Q Consensus       192 -----------~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~~~~~l~~h~~---------~VtsVaFSPDG~~L  250 (767)
                                 -.+.||+...|....+.|+ ++++.|..++.+.. ..-+.+.-|+.         .|++|+|+|.-..|
T Consensus       188 te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtl  266 (347)
T KOG0647|consen  188 TEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTL  266 (347)
T ss_pred             chhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeecccceE
Confidence                       1355777777777667777 56677777766533 22344555542         47889999988878


Q ss_pred             EEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEE
Q 004217          251 LLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (767)
Q Consensus       251 laSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva  320 (767)
                      ++.|++.                       .++||+.+...  .| .......-|+-..+|..+|+..+.
T Consensus       267 vTaGsDG-----------------------tf~FWDkdar~--kL-k~s~~~~qpItcc~fn~~G~ifaY  310 (347)
T KOG0647|consen  267 VTAGSDG-----------------------TFSFWDKDART--KL-KTSETHPQPITCCSFNRNGSIFAY  310 (347)
T ss_pred             EEecCCc-----------------------eEEEecchhhh--hh-hccCcCCCccceeEecCCCCEEEE
Confidence            8877632                       34444422211  11 122233456667789999887654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.71  E-value=2e-16  Score=176.48  Aligned_cols=254  Identities=15%  Similarity=0.158  Sum_probs=177.5

Q ss_pred             eCCCeEEEEeCCCC-CCC-------CCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCC-------eEEEEEccCCCC
Q 004217           88 VEAESLHHLRPKYC-PLS-------PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRT  151 (767)
Q Consensus        88 s~DgsIrlWd~~t~-~L~-------gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg-------~~l~~L~gH~~~  151 (767)
                      +..|.|-++++... +|.       -....|+++.|+| |...||.+++||.|+||.+..+       .....+++|...
T Consensus       600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK  679 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK  679 (1012)
T ss_pred             CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce
Confidence            45778888988653 322       2345699999999 9999999999999999998754       345678899999


Q ss_pred             cEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCe
Q 004217          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPR  229 (767)
Q Consensus       152 V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~  229 (767)
                      |+++.|||.-.+.|++++.|-+|++||+++++.... .+|.+.|..++|+|||+.+|+.+.|+ |+||+-+.++...  .
T Consensus       680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv--~  757 (1012)
T KOG1445|consen  680 ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV--Y  757 (1012)
T ss_pred             EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc--c
Confidence            999999998899999999999999999999887666 46999999999999999999998555 9999998776422  1


Q ss_pred             EEecC-CCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCcee
Q 004217          230 IVLRT-RRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLR  308 (767)
Q Consensus       230 ~l~~h-~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~  308 (767)
                      .-.+. ...-..|.|--||++++++|-...                   ..+.+.+-+...-+...+.+...+..-..+.
T Consensus       758 Eg~gpvgtRgARi~wacdgr~viv~Gfdk~-------------------SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~Lv  818 (1012)
T KOG1445|consen  758 EGKGPVGTRGARILWACDGRIVIVVGFDKS-------------------SERQVQMYDAQTLDLRPLYTQVLDVAPSPLV  818 (1012)
T ss_pred             cCCCCccCcceeEEEEecCcEEEEeccccc-------------------chhhhhhhhhhhccCCcceeeeecccCcccc
Confidence            11111 223346778889998877652110                   1112222222222222233332222333334


Q ss_pred             eEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeeccCCCCCCCCCCCCCCccccccccccCCcc
Q 004217          309 PSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQ  388 (767)
Q Consensus       309 psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~  388 (767)
                      |.|.+|.+.+.+                              +|+++..+      .-|++..++||+-=++.|.+...-
T Consensus       819 P~YD~Ds~~lfl------------------------------tGKGD~~v------~~yEv~~esPy~lpl~~f~sp~~h  862 (1012)
T KOG1445|consen  819 PHYDYDSNVLFL------------------------------TGKGDRFV------NMYEVIYESPYLLPLAPFMSPVGH  862 (1012)
T ss_pred             ccccCCCceEEE------------------------------ecCCCceE------EEEEecCCCceeeecccccCCCcc
Confidence            444444444433                              34555555      667888899999888888888888


Q ss_pred             cccccccccc
Q 004217          389 AAIGAVGTLD  398 (767)
Q Consensus       389 ~~~~~~~~~~  398 (767)
                      .++-+....+
T Consensus       863 qGl~fl~K~~  872 (1012)
T KOG1445|consen  863 QGLAFLQKLK  872 (1012)
T ss_pred             cceeeecccc
Confidence            8888876666

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.71  E-value=7.4e-17  Score=164.61  Aligned_cols=197  Identities=17%  Similarity=0.192  Sum_probs=166.7

Q ss_pred             cceeecccccceecCCc----ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCeEEE
Q 004217           54 SSKRLLGETARKCSGSF----SQIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLAS  124 (767)
Q Consensus        54 ~sk~~wd~~~~~~~~s~----s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSpDG~~LAS  124 (767)
                      ...++|+........+|    -+..++++.+...|++|+.++.+|++|++..     ++.+|++.|..+-|....+.|++
T Consensus        81 ftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLS  160 (334)
T KOG0278|consen   81 FTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILS  160 (334)
T ss_pred             chhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEe
Confidence            45667776543332232    2788899999999999999999999999875     47899999999999998889999


Q ss_pred             EeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCC
Q 004217          125 THGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGE  204 (767)
Q Consensus       125 gs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~  204 (767)
                      ...|++||+||.++++.++.|. -...|+++..++ +++++.. ...+.|++||..+...++.++....|.+...+|+..
T Consensus       161 Sadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~-dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~  237 (334)
T KOG0278|consen  161 SADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQ-DGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKE  237 (334)
T ss_pred             eccCCceEEEEeccCcEEEEEe-cCCCCcceeecc-CCCEEEE-ecCceeEEeccccccceeeccCccccccccccCCCc
Confidence            9999999999999999999886 567899999999 7775554 567889999999999999999999999999999998


Q ss_pred             EEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          205 LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       205 ~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ++++|+.+. ++.||+.+++++..  ...+|.++|.+|.|+|||...++.++
T Consensus       238 ~fVaGged~~~~kfDy~TgeEi~~--~nkgh~gpVhcVrFSPdGE~yAsGSE  287 (334)
T KOG0278|consen  238 FFVAGGEDFKVYKFDYNTGEEIGS--YNKGHFGPVHCVRFSPDGELYASGSE  287 (334)
T ss_pred             eEEecCcceEEEEEeccCCceeee--cccCCCCceEEEEECCCCceeeccCC
Confidence            888888776 99999999998661  24789999999999999995554444

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.70  E-value=5.1e-16  Score=167.05  Aligned_cols=188  Identities=14%  Similarity=0.176  Sum_probs=155.9

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK  143 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~  143 (767)
                      .+-++.++.+|++|++++.|.+..+|++...       ++.+|..+|..+.||||.++|++|+.|..+++||+.+|.+.+
T Consensus       226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~  305 (519)
T KOG0293|consen  226 EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRH  305 (519)
T ss_pred             cEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhh
Confidence            4677889999999999999999999988653       577999999999999999999999999999999999999887


Q ss_pred             EEc-cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcC
Q 004217          144 VLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYN  220 (767)
Q Consensus       144 ~L~-gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~  220 (767)
                      .+. +|...+.+++|.| |+..+++|+.|+++..||+.....-.--+ ....|.+++..+||+++++...|. |++++..
T Consensus       306 ~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e  384 (519)
T KOG0293|consen  306 LYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNRE  384 (519)
T ss_pred             hcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechh
Confidence            774 4567899999999 99999999999999999997544222211 335689999999999877776554 9999988


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCC
Q 004217          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE  263 (767)
Q Consensus       221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~  263 (767)
                      +.....    +.....+|++++.|.|++++++.-.     .||+..+.
T Consensus       385 ~~~dr~----lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~  428 (519)
T KOG0293|consen  385 ARVDRG----LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK  428 (519)
T ss_pred             hhhhhc----cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh
Confidence            765533    3445678999999999998887544     88887433

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.70  E-value=7.5e-16  Score=166.72  Aligned_cols=180  Identities=18%  Similarity=0.283  Sum_probs=154.4

Q ss_pred             EEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217           73 IFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (767)
Q Consensus        73 ~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH  148 (767)
                      ..+....+...+++++.|..|++|.....    ....|..+|+.+..+|.|.||++++.|++.-+.|++++.++......
T Consensus       265 ~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~  344 (506)
T KOG0289|consen  265 TSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE  344 (506)
T ss_pred             EEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence            33445667788899999999999998764    35689999999999999999999999999999999999987665432


Q ss_pred             C--CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCcc
Q 004217          149 R--RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE  224 (767)
Q Consensus       149 ~--~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~  224 (767)
                      +  -.+++.+||| |+.+|.+|..|+.|+|||+.++..+..|. |.++|..++|+.+|.||+++.+|+ |++||+|..+.
T Consensus       345 ~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n  423 (506)
T KOG0289|consen  345 TSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN  423 (506)
T ss_pred             cccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc
Confidence            2  3478999999 99999999999999999999998888775 999999999999999999999888 99999998875


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       225 ~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ..  .........|.++.|.+.|.+|+++++
T Consensus       424 ~k--t~~l~~~~~v~s~~fD~SGt~L~~~g~  452 (506)
T KOG0289|consen  424 FK--TIQLDEKKEVNSLSFDQSGTYLGIAGS  452 (506)
T ss_pred             cc--eeeccccccceeEEEcCCCCeEEeecc
Confidence            44  233334457999999999999988876

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.70  E-value=7.1e-17  Score=181.22  Aligned_cols=189  Identities=19%  Similarity=0.264  Sum_probs=163.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC--eEEEEEc
Q 004217           79 DARRGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--SCLKVLH  146 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~----------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg--~~l~~L~  146 (767)
                      .++++|++++.|+.|++|+....          .+..|.+-|+++...-+++.|++++.|-+|++|+...+  -++.++.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            46678999999999999998653          35679999999999999999999999999999999877  5788899


Q ss_pred             cCCCCcEEEEE-ccCCCcEEEEEeCCCeEEEEECCCCe--EEEee----------cCCCCeEEEEEcCCCCEEEEEECCc
Q 004217          147 GHRRTPWVVRF-HPLNPTIIASGSLDHEVRLWNASTAE--CIGSR----------DFYRPIASIAFHASGELLAVASGHK  213 (767)
Q Consensus       147 gH~~~V~sLaf-sP~dg~lLaSgS~DGtVrIWDl~tg~--~i~~l----------~h~~~VtsVafSPdG~~LAsgSdd~  213 (767)
                      .|++.|.|+++ .+ +..+++||+.|+.|.+||+.++.  .+..+          ++...|++++..+.|..|+.|+-.+
T Consensus       115 ~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek  193 (735)
T KOG0308|consen  115 THKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK  193 (735)
T ss_pred             cccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc
Confidence            99999999999 66 88999999999999999999873  22221          4677899999999998888888655


Q ss_pred             -EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeec
Q 004217          214 -LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATS  271 (767)
Q Consensus       214 -V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~  271 (767)
                       |++||.++.+.+.   .+.+|...|+.+..++||..++++++     +||+....+..++..+
T Consensus       194 ~lr~wDprt~~kim---kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH  254 (735)
T KOG0308|consen  194 DLRLWDPRTCKKIM---KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH  254 (735)
T ss_pred             ceEEecccccccee---eeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec
Confidence             9999999998766   77799999999999999999998776     8888877776665543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.70  E-value=1.2e-16  Score=166.97  Aligned_cols=166  Identities=28%  Similarity=0.392  Sum_probs=137.8

Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC------------C------eEEEEEccCCCCcEEEEEccCCCc
Q 004217          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT------------G------SCLKVLHGHRRTPWVVRFHPLNPT  163 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t------------g------~~l~~L~gH~~~V~sLafsP~dg~  163 (767)
                      -+..|+..+.+.+||+||.++|+|+.|..|+|.|++.            |      -.+++|-.|.+.|+++.||| ...
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re~  185 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RET  185 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hhh
Confidence            3668999999999999999999999999999999861            1      25678889999999999999 899


Q ss_pred             EEEEEeCCCeEEEEECCCCeEE---EeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeE
Q 004217          164 IIASGSLDHEVRLWNASTAECI---GSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLR  239 (767)
Q Consensus       164 lLaSgS~DGtVrIWDl~tg~~i---~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~Vt  239 (767)
                      +|++|+.|++|++||+.+....   +.+....+|.++.|+|.|.+|++|.+.- +++||+++.+.........+|.+.|+
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~  265 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT  265 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence            9999999999999999865433   3355678999999999999999999866 99999999887554445667999999


Q ss_pred             EEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004217          240 AVHFHPHAAPLLLTAE-----VNDLDSSESSLTL  268 (767)
Q Consensus       240 sVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l  268 (767)
                      +|.+++.|+..++++.     +||=.+..+..++
T Consensus       266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~  299 (430)
T KOG0640|consen  266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTI  299 (430)
T ss_pred             EEEecCCccEEEEeccCCcEEeeccccHHHHHHH
Confidence            9999999996666665     5554444444333

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.69  E-value=6e-17  Score=165.23  Aligned_cols=230  Identities=19%  Similarity=0.199  Sum_probs=182.6

Q ss_pred             EEcCCCEEEEEeCCCeEEEEeCCCCC-C--CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe-EEEEEccCCCCc
Q 004217           77 GRDARRGLASWVEAESLHHLRPKYCP-L--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLHGHRRTP  152 (767)
Q Consensus        77 ~sd~g~~LaSgs~DgsIrlWd~~t~~-L--~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~-~l~~L~gH~~~V  152 (767)
                      ...+-.+.++++.|-+-++||.-++. |  -.|+.-|.+++|+.|.++|++|+.+..+||||++..+ +...+.+|++.|
T Consensus        67 l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~I  146 (334)
T KOG0278|consen   67 LNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGI  146 (334)
T ss_pred             cCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcc
Confidence            34456677888999999999998873 2  3788999999999999999999999999999998754 567889999999


Q ss_pred             EEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEe
Q 004217          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVL  232 (767)
Q Consensus       153 ~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~  232 (767)
                      ..+-|.. ..+.|+|...|++||+||.++++.++.+..+.+|+++..+++|++|.++....|.+||.++.+.++    ..
T Consensus       147 r~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lK----s~  221 (334)
T KOG0278|consen  147 RTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLK----SY  221 (334)
T ss_pred             eeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEecccccccee----ec
Confidence            9999998 788899999999999999999999999999999999999999999999988889999999887655    33


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEeeC-----CcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCce
Q 004217          233 RTRRSLRAVHFHPHAAPLLLTAEVN-----DLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL  307 (767)
Q Consensus       233 ~h~~~VtsVaFSPDG~~LlaSgsvw-----dl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil  307 (767)
                      .-...|.+...+|+...+++.+++.     |..+++.                            +...  ......|+.
T Consensus       222 k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE----------------------------i~~~--nkgh~gpVh  271 (334)
T KOG0278|consen  222 KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE----------------------------IGSY--NKGHFGPVH  271 (334)
T ss_pred             cCccccccccccCCCceEEecCcceEEEEEeccCCce----------------------------eeec--ccCCCCceE
Confidence            4466799999999998777666522     2222221                            1111  122455777


Q ss_pred             eeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217          308 RPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       308 ~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                      .+.|+|||..-..                 +|-...+..|...-+|.+..+
T Consensus       272 cVrFSPdGE~yAs-----------------GSEDGTirlWQt~~~~~~~~~  305 (334)
T KOG0278|consen  272 CVRFSPDGELYAS-----------------GSEDGTIRLWQTTPGKTYGLW  305 (334)
T ss_pred             EEEECCCCceeec-----------------cCCCceEEEEEecCCCchhhc
Confidence            8899999976664                 233445778887777766433

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.69  E-value=2.4e-17  Score=172.59  Aligned_cols=163  Identities=19%  Similarity=0.260  Sum_probs=144.8

Q ss_pred             CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE--------ccCCCCcEEEEEccCCCcEEEEEeCCCeEEE
Q 004217          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL--------HGHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (767)
Q Consensus       105 gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L--------~gH~~~V~sLafsP~dg~lLaSgS~DGtVrI  176 (767)
                      +.+.-+.|..|||||++|++|+.||.|.|||..+|+..+.+        --+.+.|.|+.|+. |...+++|+.||.|++
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKV  289 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEE
Confidence            45667899999999999999999999999999999865443        35778999999999 9999999999999999


Q ss_pred             EECCCCeEEEeec--CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217          177 WNASTAECIGSRD--FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       177 WDl~tg~~i~~l~--h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      |.+++|.|++.+.  |...|+++.|+.|+..+.+++.|. +++.-++.++.+.   .+.+|.+.|+...|.+||.+++++
T Consensus       290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK---EfrGHsSyvn~a~ft~dG~~iisa  366 (508)
T KOG0275|consen  290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK---EFRGHSSYVNEATFTDDGHHIISA  366 (508)
T ss_pred             EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH---HhcCccccccceEEcCCCCeEEEe
Confidence            9999999999975  899999999999999999998665 9999999999876   788999999999999999999887


Q ss_pred             Ee-----eCCcCCCCcceeEeec
Q 004217          254 AE-----VNDLDSSESSLTLATS  271 (767)
Q Consensus       254 gs-----vwdl~s~~~~~~l~t~  271 (767)
                      ++     +|+..+.++..++...
T Consensus       367 SsDgtvkvW~~KtteC~~Tfk~~  389 (508)
T KOG0275|consen  367 SSDGTVKVWHGKTTECLSTFKPL  389 (508)
T ss_pred             cCCccEEEecCcchhhhhhccCC
Confidence            65     8998888887665543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=2.6e-16  Score=161.03  Aligned_cols=175  Identities=18%  Similarity=0.228  Sum_probs=144.7

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcE
Q 004217           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~  153 (767)
                      ..+..+++.+.|++||+|+....    ++.+|...|...+||| .++++++++.|+++++||++.......+..|...|.
T Consensus       115 ~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil  194 (311)
T KOG0277|consen  115 VRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEIL  194 (311)
T ss_pred             ccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeE
Confidence            34566777799999999999765    5889999999999999 889999999999999999986433344889999999


Q ss_pred             EEEEccCCCcEEEEEeCCCeEEEEECCCCe-EEEe-ecCCCCeEEEEEcCCCC-EEEEEECCc-EEEEEcCCCccccCCe
Q 004217          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGS-RDFYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREETSSPR  229 (767)
Q Consensus       154 sLafsP~dg~lLaSgS~DGtVrIWDl~tg~-~i~~-l~h~~~VtsVafSPdG~-~LAsgSdd~-V~VWDl~t~~~~~~~~  229 (767)
                      ++.|+..+.+.+++|+.|+.|++||+++-+ ++.+ .+|.-.|..++|||... +||+++.|- ++|||........  .
T Consensus       195 ~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~--e  272 (311)
T KOG0277|consen  195 CCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI--E  272 (311)
T ss_pred             eecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhh--h
Confidence            999998899999999999999999999743 4444 45888999999999874 888888776 9999988655422  3


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          230 IVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       230 ~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ....|..-|..+.||+.....+++++
T Consensus       273 ~~~~HtEFv~g~Dws~~~~~~vAs~g  298 (311)
T KOG0277|consen  273 TVDHHTEFVCGLDWSLFDPGQVASTG  298 (311)
T ss_pred             hhhccceEEeccccccccCceeeecc
Confidence            55678899999999987555555543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.68  E-value=1.7e-15  Score=178.49  Aligned_cols=174  Identities=21%  Similarity=0.184  Sum_probs=151.4

Q ss_pred             CCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCC------C----------------CCCCCCCCeEEEEECCCCCeEEEE
Q 004217           68 GSFSQIFEAGRDARRGLASWVEAESLHHLRPKY------C----------------PLSPPPRSTIAAAFSPDGKTLAST  125 (767)
Q Consensus        68 ~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t------~----------------~L~gH~~sVtsVaFSpDG~~LASg  125 (767)
                      .+....|+.++.+|.+|++|++|+.|.+|....      .                .+.+|...|.+++|+||+.+|+++
T Consensus        68 h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~  147 (942)
T KOG0973|consen   68 HDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSV  147 (942)
T ss_pred             ccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEe
Confidence            344578888999999999999999999999872      0                366999999999999999999999


Q ss_pred             eCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-------CCCCeEEEE
Q 004217          126 HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-------FYRPIASIA  198 (767)
Q Consensus       126 s~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-------h~~~VtsVa  198 (767)
                      +.|++|.|||..+.+.+..+++|...|..+.|.| -+++|++-+.|++|++|++.+..+.+.+.       ....+..+.
T Consensus       148 s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlS  226 (942)
T KOG0973|consen  148 SLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLS  226 (942)
T ss_pred             cccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecc
Confidence            9999999999999999999999999999999999 99999999999999999988877766643       234678899


Q ss_pred             EcCCCCEEEEEEC--C-c--EEEEEcCCCccccCCeEEecCCCCeEEEEEcc
Q 004217          199 FHASGELLAVASG--H-K--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHP  245 (767)
Q Consensus       199 fSPdG~~LAsgSd--d-~--V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSP  245 (767)
                      |+|||++|++...  + +  +.|.+-.+-+..   ..+.+|..++.++.|+|
T Consensus       227 WSPDG~~las~nA~n~~~~~~~IieR~tWk~~---~~LvGH~~p~evvrFnP  275 (942)
T KOG0973|consen  227 WSPDGHHLASPNAVNGGKSTIAIIERGTWKVD---KDLVGHSAPVEVVRFNP  275 (942)
T ss_pred             cCCCcCeecchhhccCCcceeEEEecCCceee---eeeecCCCceEEEEeCh
Confidence            9999999999862  2 2  888887665533   37889999999999998

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.68  E-value=8.9e-16  Score=155.75  Aligned_cols=149  Identities=16%  Similarity=0.273  Sum_probs=131.0

Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC
Q 004217          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t  181 (767)
                      .+..|.++|.++.|+-||++.++|+.|.+||+|+...|.+++++.+|...|..++.+. |+..|++|+.|..|.+||+.+
T Consensus        12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~T   90 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNT   90 (307)
T ss_pred             eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEccc
Confidence            3568999999999999999999999999999999999999999999999999999998 888999999999999999999


Q ss_pred             CeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          182 AECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       182 g~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      |+.++.+. |...|+.+.|+.+...+++|+-|. +++||.+..... +.+.+....+.|.+|..+..   .+.+++
T Consensus        91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e-PiQildea~D~V~Si~v~~h---eIvaGS  162 (307)
T KOG0316|consen   91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE-PIQILDEAKDGVSSIDVAEH---EIVAGS  162 (307)
T ss_pred             CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC-ccchhhhhcCceeEEEeccc---EEEeec
Confidence            99999875 999999999999999999999665 999999876542 24466667889999988633   444444

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.68  E-value=6.4e-15  Score=151.82  Aligned_cols=153  Identities=16%  Similarity=0.302  Sum_probs=137.0

Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC
Q 004217          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t  181 (767)
                      .|+||.++++-+.|+.+|.+|++|+.|.++.||-..+|+.+.++.||++.|+++..+- +.+.+++|+.|.++++||+.+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence            3679999999999999999999999999999999989999999999999999999988 889999999999999999999


Q ss_pred             CeEEEeecCCCCeEEEEEcCCCCEEEEEECCc------EEEEEcCCCc----cccCCeEEecCCCCeEEEEEccCCCeEE
Q 004217          182 AECIGSRDFYRPIASIAFHASGELLAVASGHK------LYIWRYNMRE----ETSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (767)
Q Consensus       182 g~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~------V~VWDl~t~~----~~~~~~~l~~h~~~VtsVaFSPDG~~Ll  251 (767)
                      |+++..++...+|..+.|+++|++++...++.      |.++|++...    ...+...+..+.+.++.+-|+|-+++|+
T Consensus        84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii  163 (327)
T KOG0643|consen   84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII  163 (327)
T ss_pred             CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence            99999999999999999999999988887642      9999998443    1112345666789999999999999888


Q ss_pred             EEEe
Q 004217          252 LTAE  255 (767)
Q Consensus       252 aSgs  255 (767)
                      +..+
T Consensus       164 ~Ghe  167 (327)
T KOG0643|consen  164 AGHE  167 (327)
T ss_pred             EecC
Confidence            8765

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.67  E-value=1.6e-15  Score=175.02  Aligned_cols=189  Identities=20%  Similarity=0.242  Sum_probs=160.8

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ...++....+..|++|+.|.++++||..++    .+.+|...|.++..-  ..++++|+.|.+|++|++.++.++..+.+
T Consensus       252 V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~  329 (537)
T KOG0274|consen  252 VWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRG  329 (537)
T ss_pred             ceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecc
Confidence            566667678999999999999999999887    488999999999886  46788899999999999999999999999


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCC-cc
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMR-EE  224 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~-~~  224 (767)
                      |.+.|.++..+   +.++++|+.|++|++||+.++++++.+. |...|.++.+... ..+++|+-|+ |++||+++. +.
T Consensus       330 h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c  405 (537)
T KOG0274|consen  330 HTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKC  405 (537)
T ss_pred             ccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhh
Confidence            99999999994   6999999999999999999999999964 9999999988776 7888998556 999999999 65


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCeEEEEE-----eeCCcCCCCcceeEeec
Q 004217          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTA-----EVNDLDSSESSLTLATS  271 (767)
Q Consensus       225 ~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg-----svwdl~s~~~~~~l~t~  271 (767)
                      +.   .+.+|..-|..+.+  .+++|+.+.     .+||....++...+.+.
T Consensus       406 ~~---tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~  452 (537)
T KOG0274|consen  406 IH---TLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR  452 (537)
T ss_pred             hh---hhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccC
Confidence            54   77888888876665  355454433     28888888877776653

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=6.1e-17  Score=183.36  Aligned_cols=181  Identities=22%  Similarity=0.282  Sum_probs=161.2

Q ss_pred             cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217           70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L  145 (767)
                      ....++.+......|+.|+.+|+|++||++..    .|.+|...+..+.|+|-+.+.++|+.|+.+++||.+...|.+.+
T Consensus        71 spIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~  150 (825)
T KOG0267|consen   71 SPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY  150 (825)
T ss_pred             CcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeee
Confidence            33566677777888999999999999999876    48899999999999999999999999999999999988899999


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCc
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMRE  223 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~  223 (767)
                      ++|...|..++|+| ++.++++++.|.+++|||...|+.+..|. |...+.++.|+|..-+++.|+.|+ |++||+++.+
T Consensus       151 ~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe  229 (825)
T KOG0267|consen  151 KSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE  229 (825)
T ss_pred             cCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence            99999999999999 99999999999999999999999999987 999999999999999999999776 9999999877


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       224 ~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      .+.   ........|.++.|+|++..++...
T Consensus       230 ~I~---s~~~~~~~v~~~~fn~~~~~~~~G~  257 (825)
T KOG0267|consen  230 VIS---SGKPETDGVRSLAFNPDGKIVLSGE  257 (825)
T ss_pred             Eee---ccCCccCCceeeeecCCceeeecCc
Confidence            654   2333467899999999999555443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=1.2e-14  Score=146.66  Aligned_cols=179  Identities=24%  Similarity=0.345  Sum_probs=152.4

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCC--CC-------CCCCCCCCeEEEEECC----CCCeEEEEeC-CCeEEEEEC
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPK--YC-------PLSPPPRSTIAAAFSP----DGKTLASTHG-DHTVKIIDC  136 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~--t~-------~L~gH~~sVtsVaFSp----DG~~LASgs~-DGtVrVWDl  136 (767)
                      +..+.+++..|..|++|++|++|++...+  ++       ++.-|.+.|.+++|-.    .|.+|++++. |..|++-|.
T Consensus        91 siyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc  170 (350)
T KOG0641|consen   91 SIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC  170 (350)
T ss_pred             cEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence            47788999999999999999999987654  33       3556889999999965    3557777654 788888899


Q ss_pred             CCCeEEEEEccCCCCcEEE-EEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec--------CCCCeEEEEEcCCCCEEE
Q 004217          137 QTGSCLKVLHGHRRTPWVV-RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--------FYRPIASIAFHASGELLA  207 (767)
Q Consensus       137 ~tg~~l~~L~gH~~~V~sL-afsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~--------h~~~VtsVafSPdG~~LA  207 (767)
                      .+|+..+.+.||++-|.++ .|   ++-.|++|+.|.+|++||++-..++..+.        ..+.|.+++.+|.|++|+
T Consensus       171 ~~g~~~~a~sghtghilalysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~  247 (350)
T KOG0641|consen  171 GRGQGFHALSGHTGHILALYSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA  247 (350)
T ss_pred             CCCCcceeecCCcccEEEEEEe---cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceee
Confidence            9999999999999999876 34   67999999999999999999999988864        125799999999999999


Q ss_pred             EEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          208 VASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       208 sgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +|-.|. ..+||++.+..++   .+..|...|++|.|+|.-.|+++.+-
T Consensus       248 sg~~dssc~lydirg~r~iq---~f~phsadir~vrfsp~a~yllt~sy  293 (350)
T KOG0641|consen  248 SGHADSSCMLYDIRGGRMIQ---RFHPHSADIRCVRFSPGAHYLLTCSY  293 (350)
T ss_pred             eccCCCceEEEEeeCCceee---eeCCCccceeEEEeCCCceEEEEecc
Confidence            999776 9999999998766   78899999999999999887776653

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=1.3e-15  Score=166.30  Aligned_cols=202  Identities=16%  Similarity=0.140  Sum_probs=167.3

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECC---------C
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ---------T  138 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~---------t  138 (767)
                      ..+++..+.|.+|+.+...+.|.+|.+.++.    +.+|-..|+|+.|+-||.+|++|+.||.|.+|++.         +
T Consensus        84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~  163 (476)
T KOG0646|consen   84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHS  163 (476)
T ss_pred             eeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCC
Confidence            5667778899999999999999999999995    56999999999999999999999999999999873         2


Q ss_pred             CeEEEEEccCCCCcEEEEEccC-CCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEE
Q 004217          139 GSCLKVLHGHRRTPWVVRFHPL-NPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYI  216 (767)
Q Consensus       139 g~~l~~L~gH~~~V~sLafsP~-dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~V  216 (767)
                      -++++.|..|+-.|+.+...+. -...++|+|.|.++++||+..+..+.++.....+.+++.+|-++.+++|+.++ |.+
T Consensus       164 ~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~  243 (476)
T KOG0646|consen  164 VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQ  243 (476)
T ss_pred             ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEe
Confidence            3578899999999999998772 24589999999999999999999999999999999999999999999998655 877


Q ss_pred             EEcCCCcc-------------ccCCeEEecCCC--CeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCC
Q 004217          217 WRYNMREE-------------TSSPRIVLRTRR--SLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPG  273 (767)
Q Consensus       217 WDl~t~~~-------------~~~~~~l~~h~~--~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG  273 (767)
                      .++.+...             ......+.+|.+  .|++++.+-||..|+++..     +||+.+-.+...+.+..|
T Consensus       244 ~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kg  320 (476)
T KOG0646|consen  244 NLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKG  320 (476)
T ss_pred             eehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcc
Confidence            77654331             112335667877  9999999999995555443     888887666665554444

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.67  E-value=3.9e-15  Score=162.28  Aligned_cols=193  Identities=19%  Similarity=0.230  Sum_probs=162.5

Q ss_pred             cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC--------------------C--CCCCCCeEEEEECCCCCeEEEEeC
Q 004217           70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYCP--------------------L--SPPPRSTIAAAFSPDGKTLASTHG  127 (767)
Q Consensus        70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~--------------------L--~gH~~sVtsVaFSpDG~~LASgs~  127 (767)
                      .+.++++.+++..++++++.+++|..|+..+++                    .  .+|...+.+++.|+||++||+|+.
T Consensus       143 ~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~  222 (479)
T KOG0299|consen  143 LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGR  222 (479)
T ss_pred             CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCC
Confidence            347788999999999999999999999987642                    1  268888999999999999999999


Q ss_pred             CCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEE
Q 004217          128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELL  206 (767)
Q Consensus       128 DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~L  206 (767)
                      |..|.|||.++.+.++.|++|.+.|.+++|-- +.+.+++++.|.+|++|++.....+.+ ++|++.|..|.-...++.+
T Consensus       223 d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~v  301 (479)
T KOG0299|consen  223 DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCV  301 (479)
T ss_pred             CceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceE
Confidence            99999999999999999999999999999988 888999999999999999998776666 6899999999988888888


Q ss_pred             EEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004217          207 AVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL  268 (767)
Q Consensus       207 AsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l  268 (767)
                      .+|+.|+ +++|++....+    ..+.+|.+.+-+++|-.+.. +++++.     .|.+..-......
T Consensus       302 tVGgrDrT~rlwKi~eesq----lifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  302 TVGGRDRTVRLWKIPEESQ----LIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKKKPLFTS  364 (479)
T ss_pred             EeccccceeEEEeccccce----eeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeecccCceeEe
Confidence            8887555 99999954433    35778889999999997766 555544     6766544444333

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.67  E-value=9.1e-15  Score=155.84  Aligned_cols=164  Identities=18%  Similarity=0.291  Sum_probs=146.9

Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC
Q 004217          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t  181 (767)
                      .+..|+.+|.+++.+|+.+++++|+.|....||++.+|.....+.+|++.|+++.|+. ++.+|++|..+|.|+||+..+
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~st  137 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVST  137 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEccc
Confidence            5778999999999999999999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             CeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe----
Q 004217          182 AECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE----  255 (767)
Q Consensus       182 g~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs----  255 (767)
                      +.....+. .-..+.=+.|||.+.+|+.|+.|+ +.+|.+.++...   +.+.+|..++++=.|.|||+++++.-.    
T Consensus       138 g~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~---kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti  214 (399)
T KOG0296|consen  138 GGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC---KVMSGHNSPCTCGEFIPDGKRILTGYDDGTI  214 (399)
T ss_pred             CceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCccee---eEecCCCCCcccccccCCCceEEEEecCceE
Confidence            99888865 556788899999999999999776 999999987543   478999999999999999998877543    


Q ss_pred             -eCCcCCCCcceeEe
Q 004217          256 -VNDLDSSESSLTLA  269 (767)
Q Consensus       256 -vwdl~s~~~~~~l~  269 (767)
                       +|+..++.....+.
T Consensus       215 ~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  215 IVWNPKTGQPLHKIT  229 (399)
T ss_pred             EEEecCCCceeEEec
Confidence             89888776655555

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.67  E-value=5e-16  Score=165.83  Aligned_cols=174  Identities=20%  Similarity=0.430  Sum_probs=136.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCC---eEEEEEccC
Q 004217           80 ARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG---SCLKVLHGH  148 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~-------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg---~~l~~L~gH  148 (767)
                      ....|.+|.--+.|++|...++       .+.+|+.+|-.++||| ....|++|+.||+|+|||++.+   .++.+ +.|
T Consensus       223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh  301 (440)
T KOG0302|consen  223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAH  301 (440)
T ss_pred             cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-ecc
Confidence            3445777777788999998775       5789999999999999 5568999999999999999987   34443 889


Q ss_pred             CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC---CeEEEeec-CCCCeEEEEEcCCCC-EEEEE-ECCcEEEEEcCCC
Q 004217          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST---AECIGSRD-FYRPIASIAFHASGE-LLAVA-SGHKLYIWRYNMR  222 (767)
Q Consensus       149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t---g~~i~~l~-h~~~VtsVafSPdG~-~LAsg-Sdd~V~VWDl~t~  222 (767)
                      .+.|+.|.|+. +..+|++|+.||+++|||++.   ++++..++ |..+|++|.|+|... .|+++ .|+.|.+||+...
T Consensus       302 ~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  302 NSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             CCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence            99999999998 666999999999999999986   55666765 899999999999764 44444 4666999998643


Q ss_pred             cc-------------ccCCeEEecC--CCCeEEEEEccCCCeEEEEEe
Q 004217          223 EE-------------TSSPRIVLRT--RRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       223 ~~-------------~~~~~~l~~h--~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ..             ..+++.+.-|  ...|..|.|++.-.-++++..
T Consensus       381 ~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa  428 (440)
T KOG0302|consen  381 ADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTA  428 (440)
T ss_pred             CChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEec
Confidence            22             0123445555  456889999998765655544

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.67  E-value=1.6e-15  Score=162.13  Aligned_cols=184  Identities=17%  Similarity=0.220  Sum_probs=151.5

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----------------------------CCCCCCCCeEEEEECCCCCe
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC-----------------------------PLSPPPRSTIAAAFSPDGKT  121 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----------------------------~L~gH~~sVtsVaFSpDG~~  121 (767)
                      .+..+....++.++++++.|.+|++|+....                             .+.||..+|.++.|++ ...
T Consensus       195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v  273 (423)
T KOG0313|consen  195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV  273 (423)
T ss_pred             ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCc
Confidence            3667777889999999999999999993210                             2569999999999997 778


Q ss_pred             EEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe--EEE--eecCCCCeEEE
Q 004217          122 LASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE--CIG--SRDFYRPIASI  197 (767)
Q Consensus       122 LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~--~i~--~l~h~~~VtsV  197 (767)
                      +++++.|++|++||+.++.++.++.+ ...++++..+| ..++|++|+.|..+++||.+++.  .+.  ..+|...|.++
T Consensus       274 ~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssv  351 (423)
T KOG0313|consen  274 IYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSV  351 (423)
T ss_pred             eEeecccceEEEEEeecccceeeeec-CcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhe
Confidence            99999999999999999998888875 46689999999 99999999999999999999754  222  25799999999


Q ss_pred             EEcCCCC-EEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004217          198 AFHASGE-LLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD  260 (767)
Q Consensus       198 afSPdG~-~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~  260 (767)
                      .|+|... .|++++. +.+++||+|..+.  +...+.+|.+.|.++.|+.. ..++++|.+..++
T Consensus       352 kwsp~~~~~~~S~S~D~t~klWDvRS~k~--plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~l~  413 (423)
T KOG0313|consen  352 KWSPTNEFQLVSGSYDNTVKLWDVRSTKA--PLYDIAGHNDKVLSVDWNEG-GLIVSGGADNKLR  413 (423)
T ss_pred             ecCCCCceEEEEEecCCeEEEEEeccCCC--cceeeccCCceEEEEeccCC-ceEEeccCcceEE
Confidence            9999886 5666664 5599999998874  34578899999999999854 4466655555554

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.66  E-value=4.9e-16  Score=177.28  Aligned_cols=174  Identities=18%  Similarity=0.284  Sum_probs=147.4

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCC-CeEEEEEccCCCCc
Q 004217           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT-GSCLKVLHGHRRTP  152 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~t-g~~l~~L~gH~~~V  152 (767)
                      ..-..|++|+.|+.|++||++..    .+.+...+|.+|+|+| .+.+++++.+.|.+++||++. .++...|..|.+.|
T Consensus       144 tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV  223 (839)
T KOG0269|consen  144 TEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV  223 (839)
T ss_pred             CCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce
Confidence            35678999999999999999865    4667888999999999 889999999999999999986 45678889999999


Q ss_pred             EEEEEccCCCcEEEEEeCCCeEEEEECCCCeE--EEeecCCCCeEEEEEcCCCC-EEEEEE--CCc-EEEEEcCCCcccc
Q 004217          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAEC--IGSRDFYRPIASIAFHASGE-LLAVAS--GHK-LYIWRYNMREETS  226 (767)
Q Consensus       153 ~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~--i~~l~h~~~VtsVafSPdG~-~LAsgS--dd~-V~VWDl~t~~~~~  226 (767)
                      .++.|+| +..+||||+.|+.|+|||+.+.+.  +.++....+|.+++|-|..+ +||+++  .+. |+|||++..-.  
T Consensus       224 ~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI--  300 (839)
T KOG0269|consen  224 LCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI--  300 (839)
T ss_pred             EEEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc--
Confidence            9999999 999999999999999999986554  45567788999999999886 577776  344 99999987654  


Q ss_pred             CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       227 ~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +...+..|...++.++|......++.+++
T Consensus       301 P~~t~~eH~~~vt~i~W~~~d~~~l~s~s  329 (839)
T KOG0269|consen  301 PYATFLEHTDSVTGIAWDSGDRINLWSCS  329 (839)
T ss_pred             cceeeeccCccccceeccCCCceeeEeec
Confidence            45678899999999999875555555554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.66  E-value=2.3e-15  Score=165.13  Aligned_cols=172  Identities=19%  Similarity=0.263  Sum_probs=147.2

Q ss_pred             CCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEE
Q 004217           90 AESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (767)
Q Consensus        90 DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lL  165 (767)
                      ...+.+|+..++    .+......|.+++|-.||++||+|...|.|+|+|..+...++.+.+|+.+|..+.|+|.++..|
T Consensus        47 S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l  126 (487)
T KOG0310|consen   47 SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTML  126 (487)
T ss_pred             ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEE
Confidence            456888888776    3556778899999999999999999999999999777667888999999999999999899999


Q ss_pred             EEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCC-EEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEE
Q 004217          166 ASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVH  242 (767)
Q Consensus       166 aSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~-~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVa  242 (767)
                      ++|+.|+.+++||+.+...+.. .+|.+.|.|.+|+|... ++++|+.|+ |++||++....   ......|..+|.++.
T Consensus       127 ~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~---~v~elnhg~pVe~vl  203 (487)
T KOG0310|consen  127 VSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS---RVVELNHGCPVESVL  203 (487)
T ss_pred             EecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc---eeEEecCCCceeeEE
Confidence            9999999999999999886544 46999999999999765 778888555 99999998853   235678999999999


Q ss_pred             EccCCCeEEEEEe----eCCcCCCCc
Q 004217          243 FHPHAAPLLLTAE----VNDLDSSES  264 (767)
Q Consensus       243 FSPDG~~LlaSgs----vwdl~s~~~  264 (767)
                      |-|.|..++++++    +||+..+..
T Consensus       204 ~lpsgs~iasAgGn~vkVWDl~~G~q  229 (487)
T KOG0310|consen  204 ALPSGSLIASAGGNSVKVWDLTTGGQ  229 (487)
T ss_pred             EcCCCCEEEEcCCCeEEEEEecCCce
Confidence            9999997777765    898885544

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=4.8e-15  Score=151.22  Aligned_cols=167  Identities=17%  Similarity=0.197  Sum_probs=137.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC--CCCeEEEEeCCCeEEEEECCCCe--EEEEEccC
Q 004217           80 ARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGS--CLKVLHGH  148 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~-------~L~gH~~sVtsVaFSp--DG~~LASgs~DGtVrVWDl~tg~--~l~~L~gH  148 (767)
                      -|++|++++.|++|+++.....       +|.||.++|..++|..  -|.+||+++.||.|.||.-++|+  .......|
T Consensus        22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h  101 (299)
T KOG1332|consen   22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAH  101 (299)
T ss_pred             hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhh
Confidence            5889999999999999998764       4789999999999987  89999999999999999988874  23456789


Q ss_pred             CCCcEEEEEccCC-CcEEEEEeCCCeEEEEECCCC-eEE-Ee--ecCCCCeEEEEEcCC---C-----------CEEEEE
Q 004217          149 RRTPWVVRFHPLN-PTIIASGSLDHEVRLWNASTA-ECI-GS--RDFYRPIASIAFHAS---G-----------ELLAVA  209 (767)
Q Consensus       149 ~~~V~sLafsP~d-g~lLaSgS~DGtVrIWDl~tg-~~i-~~--l~h~~~VtsVafSPd---G-----------~~LAsg  209 (767)
                      ...|++++|.|.+ +-.|++++.||+|.|.++++. .-. ..  ..|.-.|++++|.|-   |           +.|++|
T Consensus       102 ~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSg  181 (299)
T KOG1332|consen  102 SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSG  181 (299)
T ss_pred             cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeecc
Confidence            9999999999933 347888999999999998864 222 22  348889999999986   4           468888


Q ss_pred             ECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCC
Q 004217          210 SGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHA  247 (767)
Q Consensus       210 Sdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG  247 (767)
                      +-|. |+||+.....-.. ...+.+|.+.|+.++|.|.-
T Consensus       182 GcDn~VkiW~~~~~~w~~-e~~l~~H~dwVRDVAwaP~~  219 (299)
T KOG1332|consen  182 GCDNLVKIWKFDSDSWKL-ERTLEGHKDWVRDVAWAPSV  219 (299)
T ss_pred             CCccceeeeecCCcchhh-hhhhhhcchhhhhhhhcccc
Confidence            8555 9999998863222 34588999999999999975

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.64  E-value=3.7e-15  Score=161.91  Aligned_cols=174  Identities=19%  Similarity=0.243  Sum_probs=147.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-------C------------------CCCCCCCeEEEEECCC-CCeEEEEeCCCeEEE
Q 004217           80 ARRGLASWVEAESLHHLRPKYC-------P------------------LSPPPRSTIAAAFSPD-GKTLASTHGDHTVKI  133 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~-------~------------------L~gH~~sVtsVaFSpD-G~~LASgs~DGtVrV  133 (767)
                      .|.+++.|..|-.|.+||+.-.       +                  -.+|+..|.+++|+.. .+.||||+.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            3678999999999999998631       0                  2269999999999984 567899999999999


Q ss_pred             EECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe-EEEeecCCCCeEEEEEcCCCCE-EEEEEC
Q 004217          134 IDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSRDFYRPIASIAFHASGEL-LAVASG  211 (767)
Q Consensus       134 WDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~-~i~~l~h~~~VtsVafSPdG~~-LAsgSd  211 (767)
                      ||+.+|++..++..|.+.|.++.|+|....+|++|+.|++|.+.|.+... .-..+...+.|..++|+|.... ++++.+
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td  350 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD  350 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence            99999999999999999999999999889999999999999999999533 3344677899999999998864 445555


Q ss_pred             Cc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          212 HK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       212 d~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ++ |+-+|+|....  +...+..|...|.+|++++.-..++++++
T Consensus       351 dG~v~~~D~R~~~~--~vwt~~AHd~~ISgl~~n~~~p~~l~t~s  393 (463)
T KOG0270|consen  351 DGTVYYFDIRNPGK--PVWTLKAHDDEISGLSVNIQTPGLLSTAS  393 (463)
T ss_pred             CceEEeeecCCCCC--ceeEEEeccCCcceEEecCCCCcceeecc
Confidence            55 99999998753  34588899999999999999888888765

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.64  E-value=3.7e-15  Score=160.68  Aligned_cols=190  Identities=16%  Similarity=0.159  Sum_probs=154.9

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ...+.+..++..+++.+.|+.+++|+....    +|.+|++.|+++.|......+++|+.|.+||+||+....|.+++. 
T Consensus       222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-  300 (459)
T KOG0288|consen  222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-  300 (459)
T ss_pred             cceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-
Confidence            455667778999999999999999999876    688999999999999987779999999999999999998887764 


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCcccc
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETS  226 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~  226 (767)
                      ....+..|..+   ...++||-.|++|++||+++..+.......+.|+++..+++|..|.+++ +|.+.+.|+++.+...
T Consensus       301 ~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~  377 (459)
T KOG0288|consen  301 PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQ  377 (459)
T ss_pred             ccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEE
Confidence            34556777775   4789999999999999999999999999888999999999999887777 6669999999987544


Q ss_pred             CCeE-EecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcc
Q 004217          227 SPRI-VLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESS  265 (767)
Q Consensus       227 ~~~~-l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~  265 (767)
                      .... -.......+.+.|||++.|+++++.     +|++..++..
T Consensus       378 ~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE  422 (459)
T KOG0288|consen  378 TFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE  422 (459)
T ss_pred             EeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEE
Confidence            1111 0112445899999999998777654     6666554443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=1.2e-14  Score=152.68  Aligned_cols=252  Identities=15%  Similarity=0.139  Sum_probs=174.6

Q ss_pred             CcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCCCC--------CCCeEEEEECCCCCeEE-EEeCCCeEEEEECCC-
Q 004217           69 SFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPP--------PRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQT-  138 (767)
Q Consensus        69 s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~gH--------~~sVtsVaFSpDG~~LA-Sgs~DGtVrVWDl~t-  138 (767)
                      ......++++.+|+.|++.+.|++|++|+++.-..+.|        -+.-+.+.|+||.+-++ ++....++++|.+.. 
T Consensus        86 ~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~  165 (420)
T KOG2096|consen   86 KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKK  165 (420)
T ss_pred             CCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeec
Confidence            44588999999999999999999999999976433333        23468899999987654 445556899997643 


Q ss_pred             --CeEE---------EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEE
Q 004217          139 --GSCL---------KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELL  206 (767)
Q Consensus       139 --g~~l---------~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~L  206 (767)
                        |...         ..-+.|.-.|..+-..- ++.+|+|++.|.+|.|||++ |+.+..+. .....+..+.+|+|++|
T Consensus       166 ~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFi  243 (420)
T KOG2096|consen  166 TDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFI  243 (420)
T ss_pred             ccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEE
Confidence              2211         11134666677777776 88999999999999999999 77777765 45566778899999999


Q ss_pred             EEEEC-CcEEEEEcCCC-----ccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCC
Q 004217          207 AVASG-HKLYIWRYNMR-----EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPP  280 (767)
Q Consensus       207 AsgSd-d~V~VWDl~t~-----~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~  280 (767)
                      ++++- -.|++|.+--.     +++...+.+.+|...|.+++||++...+++.+.+..++.|+.-..+..          
T Consensus       244 a~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~----------  313 (420)
T KOG2096|consen  244 AVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA----------  313 (420)
T ss_pred             EEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec----------
Confidence            99884 45999986422     233345678999999999999999999988877322222222111110          


Q ss_pred             eEEEecCCCCCCCceeeccC---CCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeee
Q 004217          281 VICMAGAHSSSHPGLAEEVP---LITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELV  357 (767)
Q Consensus       281 ~v~l~~~~Ssd~~~L~sg~~---~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~  357 (767)
                              ..|...|..++.   .....-.....+|.|+.+++                  |.+..|+.|..++++-+.+
T Consensus       314 --------~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~------------------s~gs~l~~~~se~g~~~~~  367 (420)
T KOG2096|consen  314 --------GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV------------------SFGSDLKVFASEDGKDYPE  367 (420)
T ss_pred             --------CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe------------------ecCCceEEEEcccCccchh
Confidence                    011111111110   00111226788899998887                  5666788999988777666


Q ss_pred             e
Q 004217          358 L  358 (767)
Q Consensus       358 ~  358 (767)
                      +
T Consensus       368 ~  368 (420)
T KOG2096|consen  368 L  368 (420)
T ss_pred             H
Confidence            5

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=1.1e-14  Score=152.83  Aligned_cols=213  Identities=15%  Similarity=0.162  Sum_probs=158.0

Q ss_pred             ceecccccccccCCCccCcceeecccccceecCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCCCC----CCCeE
Q 004217           36 RNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPP----PRSTI  111 (767)
Q Consensus        36 rnVf~~~~kre~~~~~~~~sk~~wd~~~~~~~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~gH----~~sVt  111 (767)
                      -.+|++..+.+   ........-||+.-+.-...-...-+.+.+++.+|++++.|.+|.+|+++ +++.+|    ...-+
T Consensus       157 l~vyk~~K~~d---G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~  232 (420)
T KOG2096|consen  157 LCVYKLVKKTD---GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNY  232 (420)
T ss_pred             EEEEEeeeccc---CCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccc
Confidence            45676655554   22333344455443222222224446677899999999999999999998 544433    34567


Q ss_pred             EEEECCCCCeEEEEeCCCeEEEEECC---CC-----eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC-
Q 004217          112 AAAFSPDGKTLASTHGDHTVKIIDCQ---TG-----SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-  182 (767)
Q Consensus       112 sVaFSpDG~~LASgs~DGtVrVWDl~---tg-----~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg-  182 (767)
                      ..+.||+|++|++++.--.|+||.+-   .|     +.+..|+||+..|..++|++ +...+++.+.||+++|||+.-. 
T Consensus       233 ~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY  311 (420)
T KOG2096|consen  233 DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRY  311 (420)
T ss_pred             ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeeccceE
Confidence            88999999999999998899999862   33     24567899999999999999 9999999999999999998631 


Q ss_pred             ------eEEEee-----cCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEE
Q 004217          183 ------ECIGSR-----DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (767)
Q Consensus       183 ------~~i~~l-----~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Ll  251 (767)
                            +.++..     ........++.+|+|+.||.+....|+++..++++...  .....|...|.+++|++||++++
T Consensus       312 ~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~--~~e~~h~~~Is~is~~~~g~~~a  389 (420)
T KOG2096|consen  312 EAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYP--ELEDIHSTTISSISYSSDGKYIA  389 (420)
T ss_pred             ecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccch--hHHHhhcCceeeEEecCCCcEEe
Confidence                  222221     12234447999999999999988889999999877533  33456899999999999999877


Q ss_pred             EEEe
Q 004217          252 LTAE  255 (767)
Q Consensus       252 aSgs  255 (767)
                      +.|.
T Consensus       390 tcGd  393 (420)
T KOG2096|consen  390 TCGD  393 (420)
T ss_pred             eecc
Confidence            7664

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.62  E-value=1.9e-14  Score=155.16  Aligned_cols=149  Identities=18%  Similarity=0.196  Sum_probs=129.7

Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC---eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEE
Q 004217          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG---SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN  178 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg---~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWD  178 (767)
                      .+..|+..|+-+.||++|++||+++.|.+..||++...   +..+++.+|..+|..+.|+| |.+++++|+.|..+++||
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwD  297 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWD  297 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHheeecc
Confidence            47799999999999999999999999999999998654   34688899999999999999 999999999999999999


Q ss_pred             CCCCeEEEeecCC--CCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecC-CCCeEEEEEccCCCeEEEEE
Q 004217          179 ASTAECIGSRDFY--RPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRT-RRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       179 l~tg~~i~~l~h~--~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h-~~~VtsVaFSPDG~~LlaSg  254 (767)
                      +.+|.+...+.+.  ..+.+++|.|||..+++|+.|+ +..||++......    ..+. ...|.+++..+||+++++.+
T Consensus       298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~----W~gvr~~~v~dlait~Dgk~vl~v~  373 (519)
T KOG0293|consen  298 VDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN----WEGVRDPKVHDLAITYDGKYVLLVT  373 (519)
T ss_pred             CCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhc----ccccccceeEEEEEcCCCcEEEEEe
Confidence            9999999887754  7899999999999999999666 9999998664322    2222 25699999999999999887


Q ss_pred             e
Q 004217          255 E  255 (767)
Q Consensus       255 s  255 (767)
                      .
T Consensus       374 ~  374 (519)
T KOG0293|consen  374 V  374 (519)
T ss_pred             c
Confidence            6

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.62  E-value=2.4e-15  Score=159.95  Aligned_cols=243  Identities=13%  Similarity=0.118  Sum_probs=178.0

Q ss_pred             EEEEEcCC-CEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC----------
Q 004217           74 FEAGRDAR-RGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT----------  138 (767)
Q Consensus        74 ~vA~sd~g-~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t----------  138 (767)
                      +++-..+. ..+++|+.||.|++||+...    .+..|.+.|..|++..  ..+++++.|.+|+.|-++.          
T Consensus        71 ~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s  148 (433)
T KOG0268|consen   71 CLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKS  148 (433)
T ss_pred             hhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccc
Confidence            34433333 56889999999999999874    5889999999999987  6788899999999887321          


Q ss_pred             -----------------C-----------eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC
Q 004217          139 -----------------G-----------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF  190 (767)
Q Consensus       139 -----------------g-----------~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h  190 (767)
                                       |           .++..+.--.+.|.++.|+|....+|++|..|+.|.|||++.+.+++..-.
T Consensus       149 ~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~  228 (433)
T KOG0268|consen  149 VYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL  228 (433)
T ss_pred             cccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee
Confidence                             1           123333344567889999997788999999999999999999999998777


Q ss_pred             CCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEe
Q 004217          191 YRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLA  269 (767)
Q Consensus       191 ~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~  269 (767)
                      ...-+.|+|+|.+-.+++++.|. ++.||++....  +.....+|.+.|.+|+|||.|+-+++++-+..++      .+.
T Consensus       229 ~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~--p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIR------If~  300 (433)
T KOG0268|consen  229 TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR--PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIR------IFP  300 (433)
T ss_pred             eccccceecCccccceeeccccccceehhhhhhcc--cchhhcccceeEEEeccCCCcchhccccccceEE------Eee
Confidence            78888999999777777777666 99999987665  3457788999999999999999877665433333      122


Q ss_pred             ecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccC
Q 004217          270 TSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYST  349 (767)
Q Consensus       270 t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~  349 (767)
                      ...++..              |-.+...     --.++.+.||-|.++|+.                 +|....+..|.+
T Consensus       301 ~~~~~SR--------------diYhtkR-----Mq~V~~Vk~S~Dskyi~S-----------------GSdd~nvRlWka  344 (433)
T KOG0268|consen  301 VNHGHSR--------------DIYHTKR-----MQHVFCVKYSMDSKYIIS-----------------GSDDGNVRLWKA  344 (433)
T ss_pred             cCCCcch--------------hhhhHhh-----hheeeEEEEeccccEEEe-----------------cCCCcceeeeec
Confidence            2222211              1111100     113456889999999997                 233445677888


Q ss_pred             CCCceeeeeccCC
Q 004217          350 PSGQYELVLSPIA  362 (767)
Q Consensus       350 ~~~q~~~~~~p~~  362 (767)
                      -.-+....++|.+
T Consensus       345 ~Aseklgv~t~rE  357 (433)
T KOG0268|consen  345 KASEKLGVITPRE  357 (433)
T ss_pred             chhhhcCCCChhH
Confidence            7777777777765

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.61  E-value=5.5e-15  Score=154.74  Aligned_cols=186  Identities=17%  Similarity=0.241  Sum_probs=157.8

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEEC------CC------
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC------QT------  138 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl------~t------  138 (767)
                      ++.......+.+.+.|.+-++|.++++    ++.||.+.|++|+|++.+.++++++.|++..||..      ..      
T Consensus       154 Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~  233 (481)
T KOG0300|consen  154 VAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSD  233 (481)
T ss_pred             ehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCC
Confidence            444455667778899999999999987    57899999999999999999999999999999972      00      


Q ss_pred             ------------------------C----eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-c
Q 004217          139 ------------------------G----SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-D  189 (767)
Q Consensus       139 ------------------------g----~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~  189 (767)
                                              +    .++..|++|.+.|.+..|-. +++.+++++.|.+..+||+++++.+..+ +
T Consensus       234 hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtG  312 (481)
T KOG0300|consen  234 HSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTG  312 (481)
T ss_pred             CCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccC
Confidence                                    0    24567889999999999998 9999999999999999999999999886 5


Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCC
Q 004217          190 FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE  263 (767)
Q Consensus       190 h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~  263 (767)
                      |....+.++-+|..+++++++.|. .++||++..  +.....+.+|.+.|+++.|.-|.+ ++.++.     +||++...
T Consensus       313 Hd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea--I~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMR  389 (481)
T KOG0300|consen  313 HDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA--IQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMR  389 (481)
T ss_pred             cchhccccccCCcceEEEEeccCceeEeccchhh--cceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeecccc
Confidence            889999999999999999999776 999999943  334567899999999999998887 555433     88888654


Q ss_pred             c
Q 004217          264 S  264 (767)
Q Consensus       264 ~  264 (767)
                      .
T Consensus       390 s  390 (481)
T KOG0300|consen  390 S  390 (481)
T ss_pred             C
Confidence            4

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.61  E-value=9.4e-15  Score=164.39  Aligned_cols=174  Identities=17%  Similarity=0.257  Sum_probs=151.9

Q ss_pred             EcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEE-CCCCCeEEEEeCCCeEEEEECCCCe--EE------
Q 004217           78 RDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAF-SPDGKTLASTHGDHTVKIIDCQTGS--CL------  142 (767)
Q Consensus        78 sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaF-SpDG~~LASgs~DGtVrVWDl~tg~--~l------  142 (767)
                      ...++.|++++.|.+|++|+....      .+..|.+.|.|+++ .++..++|+|+-|+.|.|||+.++.  .+      
T Consensus        82 ~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~  161 (735)
T KOG0308|consen   82 CGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV  161 (735)
T ss_pred             hcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc
Confidence            347889999999999999999764      57899999999999 7899999999999999999999872  22      


Q ss_pred             --EEEc-cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEE
Q 004217          143 --KVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIW  217 (767)
Q Consensus       143 --~~L~-gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VW  217 (767)
                        ..+. |++..|++++.++ .+..|++|+..+.+++||.++.+.+.. .+|...|..+..++||+.+++++.|+ |++|
T Consensus       162 t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlW  240 (735)
T KOG0308|consen  162 TVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLW  240 (735)
T ss_pred             ccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEee
Confidence              2233 8999999999999 888999999999999999999876655 56999999999999999999988666 9999


Q ss_pred             EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       218 Dl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      |+....++.   .+..|...|+++..+|+=..+.+++.
T Consensus       241 dLgqQrCl~---T~~vH~e~VWaL~~~~sf~~vYsG~r  275 (735)
T KOG0308|consen  241 DLGQQRCLA---TYIVHKEGVWALQSSPSFTHVYSGGR  275 (735)
T ss_pred             eccccceee---eEEeccCceEEEeeCCCcceEEecCC
Confidence            999888755   68889999999999999887777766

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=3e-14  Score=165.41  Aligned_cols=188  Identities=16%  Similarity=0.208  Sum_probs=156.4

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ....+.......+++++++++|..|....++    |...+-++.+++|+-+|+++|.|+.|-.|++-+..+......+++
T Consensus        57 ~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg  136 (933)
T KOG1274|consen   57 ELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG  136 (933)
T ss_pred             ceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc
Confidence            4555566677799999999999999998763    445567899999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec---------CCCCeEEEEEcCCC-CEEEEEECCcEEEE
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---------FYRPIASIAFHASG-ELLAVASGHKLYIW  217 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~---------h~~~VtsVafSPdG-~~LAsgSdd~V~VW  217 (767)
                      |.++|.++.|+| ++++|++.+-||+|++||+.++.+...+.         ....+..++|+|+| ++++.+.++.|++|
T Consensus       137 h~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy  215 (933)
T KOG1274|consen  137 HDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVY  215 (933)
T ss_pred             cCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEE
Confidence            999999999999 99999999999999999999988876643         13456789999995 56666678889999


Q ss_pred             EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004217          218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (767)
Q Consensus       218 Dl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s  261 (767)
                      +.......... ....+...+..++|+|+|+||+++.-     +||+++
T Consensus       216 ~r~~we~~f~L-r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  216 SRKGWELQFKL-RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             ccCCceeheee-cccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            98887754411 12234445999999999999888765     888885

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.60  E-value=1.4e-14  Score=159.53  Aligned_cols=183  Identities=17%  Similarity=0.203  Sum_probs=136.0

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----------------CCCCCCCCeEEEEECCC-CCeEEEEeCCCeEEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----------------PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKII  134 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----------------~L~gH~~sVtsVaFSpD-G~~LASgs~DGtVrVW  134 (767)
                      ......+..+..|+..+.....+++|-...                ..+||...++|.+|+|+ ...+++++.||++|||
T Consensus       217 i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiW  296 (641)
T KOG0772|consen  217 INSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIW  296 (641)
T ss_pred             cceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEE
Confidence            344556667777777777778888886532                24699999999999994 4578999999999999


Q ss_pred             ECCCCe-EEEEEc-----cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE--EEe--ecCCC--CeEEEEEcCC
Q 004217          135 DCQTGS-CLKVLH-----GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC--IGS--RDFYR--PIASIAFHAS  202 (767)
Q Consensus       135 Dl~tg~-~l~~L~-----gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~--i~~--l~h~~--~VtsVafSPd  202 (767)
                      |+..-+ .+..|+     +-+-.++.++|+| ++++|++|..||.|.+||..+...  ...  -.|..  .|+||+||++
T Consensus       297 dv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d  375 (641)
T KOG0772|consen  297 DVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD  375 (641)
T ss_pred             ecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc
Confidence            998643 333332     2334688999999 999999999999999999864322  111  23555  8999999999


Q ss_pred             CCEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          203 GELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       203 G~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      |++|++-+. +.+++||+++.++......-......-+.++||||.+.|+++.+
T Consensus       376 g~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  376 GNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             cchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence            999999884 55999999988753322222233455678999999996666544

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.59  E-value=3.7e-14  Score=159.40  Aligned_cols=322  Identities=15%  Similarity=0.101  Sum_probs=203.7

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC  141 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~  141 (767)
                      ..+.+.......|+.+.+||.|.++|.+..          ....|...|.++.|-|-..+|++++.|.++++||++++++
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l  134 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL  134 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence            344445567788999999999999998654          2347999999999999777899999999999999999988


Q ss_pred             EEE--EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEE--------------------Ee--------ecCC
Q 004217          142 LKV--LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI--------------------GS--------RDFY  191 (767)
Q Consensus       142 l~~--L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i--------------------~~--------l~h~  191 (767)
                      +..  +.||++.|.+++|.|.+...|++|+.||.|.|||++-...-                    +.        ..+.
T Consensus       135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s  214 (720)
T KOG0321|consen  135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS  214 (720)
T ss_pred             ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence            766  89999999999999999999999999999999999743210                    00        1122


Q ss_pred             CCeEE---EEEcCCCCEEEEEEC-Cc-EEEEEcCCCccccC---C--eEEecC---CCCeEEEEEccCCCeEEEEEeeC-
Q 004217          192 RPIAS---IAFHASGELLAVASG-HK-LYIWRYNMREETSS---P--RIVLRT---RRSLRAVHFHPHAAPLLLTAEVN-  257 (767)
Q Consensus       192 ~~Vts---VafSPdG~~LAsgSd-d~-V~VWDl~t~~~~~~---~--~~l~~h---~~~VtsVaFSPDG~~LlaSgsvw-  257 (767)
                      ..|.+   +.+.-|...||+++. |+ |+|||+++......   .  ..+.-|   ...+.++.....|.+|+++|.+. 
T Consensus       215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s  294 (720)
T KOG0321|consen  215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS  294 (720)
T ss_pred             CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence            33444   555667788888884 54 99999997653221   1  111122   34577888888899999999843 


Q ss_pred             ----CcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCC--------
Q 004217          258 ----DLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEH--------  325 (767)
Q Consensus       258 ----dl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~--------  325 (767)
                          ++.. .....+..+.|+   ....+++....++++..+.+++.+...-+|.+.--...-.++++|+.+        
T Consensus       295 Iy~ynm~s-~s~sP~~~~sg~---~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p  370 (720)
T KOG0321|consen  295 IYFYNMRS-LSISPVAEFSGK---LNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP  370 (720)
T ss_pred             EEEEeccc-cCcCchhhccCc---ccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence                3332 122233333443   345566666678899999999888777777433222232333333332        


Q ss_pred             -CCCCcccccccccCCceeeeeccCCCCceeeeeccCCCCCCCCCCCCCCccccccccc-cCCccccccccccccCCCCC
Q 004217          326 -DSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEID-GALPQAAIGAVGTLDGLPEE  403 (767)
Q Consensus       326 -d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  403 (767)
                       +.+...+.     |...++..|+..++-.+.-.--.+...+-.+...   ..++.+-. ....++..-+||-..++++.
T Consensus       371 S~~t~v~Tc-----SdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rf---k~~~p~~~nv~ss~~~t~~~pR~~~~r~~  442 (720)
T KOG0321|consen  371 SATTPVATC-----SDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRF---KGHLPQVLNVNSSLRKTYKDPREGMNRIS  442 (720)
T ss_pred             ccCCCceee-----ccCcceEEEeccCchhhccccccchhhhhhhhhh---hccccccccccccccccccchhhhccccc
Confidence             22222222     3344566677644333322211112222222221   11222221 12344556667776677766


Q ss_pred             CC
Q 004217          404 RT  405 (767)
Q Consensus       404 ~~  405 (767)
                      +.
T Consensus       443 ss  444 (720)
T KOG0321|consen  443 SS  444 (720)
T ss_pred             cC
Confidence            54

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=1e-13  Score=145.52  Aligned_cols=186  Identities=16%  Similarity=0.173  Sum_probs=148.2

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ..+..++..|..|+.|..||.|-+||+.+.    .+.+|..+|++++||+||++|++++.|..|++||+..|.+++.++ 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            667778899999999999999999999885    588999999999999999999999999999999999999998887 


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ec----CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCC
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RD----FYRPIASIAFHASGELLAVASGHK-LYIWRYNM  221 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~----h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t  221 (767)
                      -..+|+...|+|.+.+.++..-.+..-.+-++..++.... ..    ......+..|++.|+++++|...+ +.++|..+
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t  184 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET  184 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence            5688999999998888877777776666666665333222 11    112233446999999999998655 99999999


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004217          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD  260 (767)
Q Consensus       222 ~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~  260 (767)
                      .+.+...+..  ....|.++.|+-.|+++++-+++--++
T Consensus       185 ~e~vas~rit--s~~~IK~I~~s~~g~~liiNtsDRvIR  221 (405)
T KOG1273|consen  185 LECVASFRIT--SVQAIKQIIVSRKGRFLIINTSDRVIR  221 (405)
T ss_pred             heeeeeeeec--hheeeeEEEEeccCcEEEEecCCceEE
Confidence            8765522211  136789999999999998877644444

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.57  E-value=2.4e-14  Score=162.12  Aligned_cols=209  Identities=14%  Similarity=0.177  Sum_probs=160.4

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEE
Q 004217           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~s  154 (767)
                      .++.+++.|+.|+.|.+|.....    .|.+|...|.+++...++. +++||+|.+++||-.  +++...+.+|+..|++
T Consensus        69 ~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWA  145 (745)
T KOG0301|consen   69 SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWA  145 (745)
T ss_pred             ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheee
Confidence            57778999999999999999775    5889999999999988887 999999999999975  5666779999999999


Q ss_pred             EEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEec
Q 004217          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLR  233 (767)
Q Consensus       155 LafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~  233 (767)
                      +..-| .. .++||+.|++|++|.-  +++++++ +|.+.|..+++-+++.+|-++.|+.|++||+ +++.+.   ...+
T Consensus       146 v~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~---~~~g  217 (745)
T KOG0301|consen  146 VASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLL---EMHG  217 (745)
T ss_pred             eeecC-CC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceee---eeec
Confidence            99988 43 9999999999999975  6677775 5999999999998877765555666999999 455443   6889


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeeCCcCCCC---cceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCce
Q 004217          234 TRRSLRAVHFHPHAAPLLLTAEVNDLDSSE---SSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL  307 (767)
Q Consensus       234 h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~---~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil  307 (767)
                      |..-|++++..+++..+++++++..++-|+   +...+.         -|..++|+...=....+..|.++...++|
T Consensus       218 htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~---------lPttsiWsa~~L~NgDIvvg~SDG~VrVf  285 (745)
T KOG0301|consen  218 HTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVIT---------LPTTSIWSAKVLLNGDIVVGGSDGRVRVF  285 (745)
T ss_pred             cceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEe---------cCccceEEEEEeeCCCEEEeccCceEEEE
Confidence            999999999777777788888733333332   322222         13455666544444555666444443333

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=8.8e-15  Score=173.20  Aligned_cols=187  Identities=19%  Similarity=0.231  Sum_probs=147.0

Q ss_pred             CEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCC-CCeEEEEeCCCeEEEEECCCCeEEEEEc--cC
Q 004217           82 RGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGSCLKVLH--GH  148 (767)
Q Consensus        82 ~~LaSgs~DgsIrlWd~~t~----------~L~gH~~sVtsVaFSpD-G~~LASgs~DGtVrVWDl~tg~~l~~L~--gH  148 (767)
                      +.|+.|.+||.|.+||...-          +...|++.|..++|++. +++||+|+.||.|.|||+..-+.-..+.  .-
T Consensus        81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~  160 (1049)
T KOG0307|consen   81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAP  160 (1049)
T ss_pred             ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCC
Confidence            45888999999999998762          46689999999999995 5599999999999999998755433331  24


Q ss_pred             CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC---CCCeEEEEEcCCCC-EEEEEEC-Cc---EEEEEcC
Q 004217          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF---YRPIASIAFHASGE-LLAVASG-HK---LYIWRYN  220 (767)
Q Consensus       149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h---~~~VtsVafSPdG~-~LAsgSd-d~---V~VWDl~  220 (767)
                      .+.|.+++|+....++|++++.+|.+.|||++..+.+..+..   ...+..++|||++. .|+++++ |+   |.+||+|
T Consensus       161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR  240 (1049)
T KOG0307|consen  161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR  240 (1049)
T ss_pred             cccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence            568999999987889999999999999999999887776542   34588999999984 5666664 44   9999999


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEEE-Ee-----eCCcCCCCcceeEee
Q 004217          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT-AE-----VNDLDSSESSLTLAT  270 (767)
Q Consensus       221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS-gs-----vwdl~s~~~~~~l~t  270 (767)
                      ....  +...+.+|...|.++.|++.+..++++ ++     .|+..+++....+-+
T Consensus       241 ~ass--P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~  294 (1049)
T KOG0307|consen  241 FASS--PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA  294 (1049)
T ss_pred             ccCC--chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence            7664  334667999999999999988555554 44     677776665544444

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.57  E-value=4.6e-14  Score=147.03  Aligned_cols=198  Identities=16%  Similarity=0.234  Sum_probs=157.0

Q ss_pred             CCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCe------------EE---EEEccCCCCcEEEEEccCCCcEEEE
Q 004217          104 SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS------------CL---KVLHGHRRTPWVVRFHPLNPTIIAS  167 (767)
Q Consensus       104 ~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~------------~l---~~L~gH~~~V~sLafsP~dg~lLaS  167 (767)
                      ..|.+.|+++...+ .|+++++|+.||.|.|||++...            ++   .--.+|+-.|..+.|.|.|...|.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            46899999999999 89999999999999999997532            11   0113688899999999999999999


Q ss_pred             EeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCC---EEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEE
Q 004217          168 GSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGE---LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHF  243 (767)
Q Consensus       168 gS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~---~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaF  243 (767)
                      ++-|.++++||..+-+....+..++.|++-+|+|-..   ++|+|.++- |++.|+..+....   .+.+|.+.|.+|.|
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH---~LsGHr~~vlaV~W  196 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH---TLSGHRDGVLAVEW  196 (397)
T ss_pred             ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee---eeccccCceEEEEe
Confidence            9999999999999999999999999999999999654   677777665 9999999998755   88999999999999


Q ss_pred             ccCCCeEEEEEe------eCCcCCC-CcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCC
Q 004217          244 HPHAAPLLLTAE------VNDLDSS-ESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDE  316 (767)
Q Consensus       244 SPDG~~LlaSgs------vwdl~s~-~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~  316 (767)
                      +|...+++++++      .||++.. .+...+..+++.  ++ +.+.              .-+.....+.-.+|+.|+.
T Consensus       197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k--~~-p~~~--------------~n~ah~gkvngla~tSd~~  259 (397)
T KOG4283|consen  197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTK--RP-PILK--------------TNTAHYGKVNGLAWTSDAR  259 (397)
T ss_pred             ccCceeEEEecCCCceEEEEEeecccceeEEeecccCc--cC-cccc--------------ccccccceeeeeeecccch
Confidence            999999999876      8999854 344444433331  12 2222              1122334556788999998


Q ss_pred             EEEEe
Q 004217          317 RISLQ  321 (767)
Q Consensus       317 rIva~  321 (767)
                      ++..-
T Consensus       260 ~l~~~  264 (397)
T KOG4283|consen  260 YLASC  264 (397)
T ss_pred             hhhhc
Confidence            87763

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.57  E-value=6.1e-14  Score=153.06  Aligned_cols=180  Identities=17%  Similarity=0.167  Sum_probs=151.0

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~  146 (767)
                      ..+++++++++++|++|..|..|.+|+..+.    .+.+|.+.|.+++|-..-..|++++.|++|++|+++....+.++.
T Consensus       204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly  283 (479)
T KOG0299|consen  204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY  283 (479)
T ss_pred             eeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh
Confidence            4778999999999999999999999999987    378999999999999988899999999999999999999999999


Q ss_pred             cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccc
Q 004217          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET  225 (767)
Q Consensus       147 gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~  225 (767)
                      ||.+.|..|.-.. -++.+..|+.|.++++|++.....+....+.+.+-|++|-.+ .++++|++++ |.+|++.+.+.+
T Consensus       284 GHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkpl  361 (479)
T KOG0299|consen  284 GHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPL  361 (479)
T ss_pred             CCccceeeechhc-ccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCce
Confidence            9999999998776 566677777999999999976666666678889999999755 5777888777 999999887754


Q ss_pred             cCCeEEecC-----------CCCeEEEEEccCCCeEEEEEe
Q 004217          226 SSPRIVLRT-----------RRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       226 ~~~~~l~~h-----------~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      -  .....|           ..+|++|+..|... |+++++
T Consensus       362 f--~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS  399 (479)
T KOG0299|consen  362 F--TSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGS  399 (479)
T ss_pred             e--EeeccccccCCccccccccceeeeEecccCc-eEEecC
Confidence            3  111122           23899999999988 555543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.56  E-value=4.6e-14  Score=154.82  Aligned_cols=178  Identities=12%  Similarity=0.126  Sum_probs=147.0

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-------CCC--CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-------PLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL  142 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-------~L~--gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l  142 (767)
                      +..+++++..+.+++|. .+-|++||+...       +|.  ....-|.++.+.|||+.|++|+.--+|.|||+......
T Consensus       422 VcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr  500 (705)
T KOG0639|consen  422 VCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR  500 (705)
T ss_pred             EEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc
Confidence            55666788889999886 567999999753       122  34456899999999999999999999999999875433


Q ss_pred             --EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEE-CCcEEEEE
Q 004217          143 --KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWR  218 (767)
Q Consensus       143 --~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgS-dd~V~VWD  218 (767)
                        ..+..-.-.++.++.+| |.++++++..||.|.|||+.+...++.+. |.+.+.||.+++||..|-+|+ |+.|+.||
T Consensus       501 ikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWD  579 (705)
T KOG0639|consen  501 IKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWD  579 (705)
T ss_pred             hhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehh
Confidence              23333334678899999 99999999999999999999999998875 999999999999999999999 56699999


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ++++.++.    .....+.|.++..+|++.+++++.+
T Consensus       580 lregrqlq----qhdF~SQIfSLg~cP~~dWlavGMe  612 (705)
T KOG0639|consen  580 LREGRQLQ----QHDFSSQIFSLGYCPTGDWLAVGME  612 (705)
T ss_pred             hhhhhhhh----hhhhhhhheecccCCCccceeeecc
Confidence            99988655    2233678999999999999988765

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.56  E-value=9.6e-14  Score=144.66  Aligned_cols=176  Identities=16%  Similarity=0.175  Sum_probs=145.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC-------------------CCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCC
Q 004217           79 DARRGLASWVEAESLHHLRPKYCP-------------------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT  138 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~~-------------------L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~t  138 (767)
                      ..++++++|..|+.|-+||++...                   -.+|+-.|.++.|-| |...+.+++.|+++||||..+
T Consensus        54 tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT  133 (397)
T KOG4283|consen   54 TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT  133 (397)
T ss_pred             ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeeccc
Confidence            578999999999999999997531                   237888999999999 888999999999999999999


Q ss_pred             CeEEEEEccCCCCcEEEEEccCC--CcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCE-EEEEECCc-
Q 004217          139 GSCLKVLHGHRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGEL-LAVASGHK-  213 (767)
Q Consensus       139 g~~l~~L~gH~~~V~sLafsP~d--g~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~-LAsgSdd~-  213 (767)
                      .+....|+ -.+.|++-+|+|..  .-++++|..|-.|++.|+.+|.+.+++ +|...|.++.|+|...+ |++|+.|+ 
T Consensus       134 lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~  212 (397)
T KOG4283|consen  134 LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA  212 (397)
T ss_pred             ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce
Confidence            98888876 56789999999843  347888889999999999999999986 59999999999999885 66777555 


Q ss_pred             EEEEEcCCCc-c---------ccC--CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          214 LYIWRYNMRE-E---------TSS--PRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       214 V~VWDl~t~~-~---------~~~--~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      |++||++... .         ...  ...-..|.+.|+.++|+.|+.++++.+-
T Consensus       213 irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt  266 (397)
T KOG4283|consen  213 IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT  266 (397)
T ss_pred             EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence            9999998651 1         111  1123467889999999999998887765

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=5.6e-13  Score=140.37  Aligned_cols=189  Identities=14%  Similarity=0.167  Sum_probs=145.2

Q ss_pred             EEEEcCCCEEEEEeC--CCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217           75 EAGRDARRGLASWVE--AESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (767)
Q Consensus        75 vA~sd~g~~LaSgs~--DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH  148 (767)
                      ..+......++..+.  |.+||..++.+.+    +.||...|+.++.+|-+..+++++.|++|++||++..++...+.--
T Consensus        62 ~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~  141 (311)
T KOG1446|consen   62 ACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS  141 (311)
T ss_pred             EEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC
Confidence            334445555555554  8899999998874    7899999999999998899999999999999999998888877644


Q ss_pred             CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC--eEEEeec----CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCC
Q 004217          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA--ECIGSRD----FYRPIASIAFHASGELLAVASGHK-LYIWRYNM  221 (767)
Q Consensus       149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg--~~i~~l~----h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t  221 (767)
                      ..+|  ++|.| .+-++|.+...+.|++||++.-  .+..++.    .....+.+.|+|||++|+.+..+. +++.|.-.
T Consensus       142 ~~pi--~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~  218 (311)
T KOG1446|consen  142 GRPI--AAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD  218 (311)
T ss_pred             CCcc--eeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC
Confidence            4444  78999 8899999988889999999963  3444432    456789999999999988888666 99999988


Q ss_pred             CccccCCeEEecCCC---CeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEe
Q 004217          222 REETSSPRIVLRTRR---SLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA  269 (767)
Q Consensus       222 ~~~~~~~~~l~~h~~---~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~  269 (767)
                      +....   .+..+..   ---+.+|+||+++++.+..     +|++.++.....+.
T Consensus       219 G~~~~---tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~  271 (311)
T KOG1446|consen  219 GTVKS---TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR  271 (311)
T ss_pred             CcEee---eEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec
Confidence            88544   3444322   2268889999998887765     77776555443333

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=1.5e-12  Score=136.81  Aligned_cols=174  Identities=17%  Similarity=0.214  Sum_probs=138.0

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCCCC---CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCC
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYCPL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~~L---~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~  151 (767)
                      +.+.+.+..|+..+.||++++|+.....+   ..|..++.+++|.+ ...+++|+-||.|+++|+.+++. ..+..|...
T Consensus        19 v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~   96 (323)
T KOG1036|consen   19 VKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-DQIGTHDEG   96 (323)
T ss_pred             EEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-eeeccCCCc
Confidence            44446777777788999999999987643   37999999999996 56889999999999999998874 445679999


Q ss_pred             cEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeE
Q 004217          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRI  230 (767)
Q Consensus       152 V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~  230 (767)
                      |.+|.+++ ..+.+++|+.|++|++||.+.......+.....|.++..  .|..|++|..+. +.+||+++..... ...
T Consensus        97 i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~-q~r  172 (323)
T KOG1036|consen   97 IRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPF-QRR  172 (323)
T ss_pred             eEEEEeec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchh-hhc
Confidence            99999999 888999999999999999998777777777788988765  466777876555 9999999876532 112


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEE
Q 004217          231 VLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       231 l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      ...-+-.+++|++-|++.-+++++
T Consensus       173 eS~lkyqtR~v~~~pn~eGy~~sS  196 (323)
T KOG1036|consen  173 ESSLKYQTRCVALVPNGEGYVVSS  196 (323)
T ss_pred             cccceeEEEEEEEecCCCceEEEe
Confidence            233456788899888766555543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.55  E-value=1.3e-13  Score=148.63  Aligned_cols=181  Identities=22%  Similarity=0.303  Sum_probs=142.6

Q ss_pred             EEEEcCCC-EEEEEeCCCeEEEEeCCCC-------------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECC---
Q 004217           75 EAGRDARR-GLASWVEAESLHHLRPKYC-------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ---  137 (767)
Q Consensus        75 vA~sd~g~-~LaSgs~DgsIrlWd~~t~-------------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~---  137 (767)
                      +.+..+.. .+++++.|..|++|.....             .|..|...|+++.|+|+|.+||+|+.+|.|.+|-..   
T Consensus        19 ~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~   98 (434)
T KOG1009|consen   19 VDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVR   98 (434)
T ss_pred             EEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcC
Confidence            33433433 9999999999999998653             367899999999999999999999999999999765   


Q ss_pred             -----C--------CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCC
Q 004217          138 -----T--------GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASG  203 (767)
Q Consensus       138 -----t--------g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG  203 (767)
                           +        ....+.+.+|...|+.++|+| +++++++++.|+++++||+..|+....+ +|...+..++|+|.+
T Consensus        99 ~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~  177 (434)
T KOG1009|consen   99 IFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLN  177 (434)
T ss_pred             CccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhh
Confidence                 2        123466789999999999999 9999999999999999999999999886 488999999999999


Q ss_pred             CEEEEEECCc-EEEEEcCCCccccCCe----------------EEecC----CCCeEEEEEccCCCeEEEEEee
Q 004217          204 ELLAVASGHK-LYIWRYNMREETSSPR----------------IVLRT----RRSLRAVHFHPHAAPLLLTAEV  256 (767)
Q Consensus       204 ~~LAsgSdd~-V~VWDl~t~~~~~~~~----------------~l~~h----~~~VtsVaFSPDG~~LlaSgsv  256 (767)
                      +++++-+.++ .+++++.....+....                ...-|    ..-.+.++|+|||..+++-++.
T Consensus       178 qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~  251 (434)
T KOG1009|consen  178 QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL  251 (434)
T ss_pred             hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence            9999888665 6666655443222110                01112    1235678899999988775553

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.54  E-value=2.1e-13  Score=143.35  Aligned_cols=151  Identities=25%  Similarity=0.377  Sum_probs=126.4

Q ss_pred             CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCc--EEEEEeCCCeEEEEECC
Q 004217          103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT--IIASGSLDHEVRLWNAS  180 (767)
Q Consensus       103 L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~--lLaSgS~DGtVrIWDl~  180 (767)
                      +..|.++|++++.+  +.++|+|+.|.+|+|||+.+...+..+-.|.+.|+++.|.+ ...  .|++|+.||.|.+|+..
T Consensus        39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~  115 (362)
T KOG0294|consen   39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVG  115 (362)
T ss_pred             ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcC
Confidence            46899999999997  89999999999999999999999999999999999999987 443  89999999999999999


Q ss_pred             CCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe---
Q 004217          181 TAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE---  255 (767)
Q Consensus       181 tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs---  255 (767)
                      ..+++..+. |...|+.++.+|.|++-++-++|+ +++||+-.++...    ...-...-+.|.|+|.|.+++..+.   
T Consensus       116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~----v~~L~~~at~v~w~~~Gd~F~v~~~~~i  191 (362)
T KOG0294|consen  116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF----VLNLKNKATLVSWSPQGDHFVVSGRNKI  191 (362)
T ss_pred             CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce----eeccCCcceeeEEcCCCCEEEEEeccEE
Confidence            999998875 888899999999999766666555 9999998876533    2222233345999999998887765   


Q ss_pred             -eCCcC
Q 004217          256 -VNDLD  260 (767)
Q Consensus       256 -vwdl~  260 (767)
                       +|.++
T Consensus       192 ~i~q~d  197 (362)
T KOG0294|consen  192 DIYQLD  197 (362)
T ss_pred             EEEecc
Confidence             55544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.54  E-value=1.2e-13  Score=156.70  Aligned_cols=171  Identities=19%  Similarity=0.212  Sum_probs=141.1

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCC
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~--~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~  149 (767)
                      +.+..+..++. +++|+.|.++++|.....  .+.+|+..|+++++-|++ .+++|+.|.+||+|.-  ++.+++|.||+
T Consensus       104 VC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHt  179 (745)
T KOG0301|consen  104 VCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHT  179 (745)
T ss_pred             eeeeecCCcCc-eEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccch
Confidence            33344444444 999999999999998765  588999999999999987 8899999999999974  78899999999


Q ss_pred             CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccC
Q 004217          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS  227 (767)
Q Consensus       150 ~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~  227 (767)
                      +-|..+++-+  ...|+|++.||.|++||+ +++++.. .+|...|++++...++..+++++.|+ ++||+..  ...+ 
T Consensus       180 D~VRgL~vl~--~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q-  253 (745)
T KOG0301|consen  180 DCVRGLAVLD--DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQ-  253 (745)
T ss_pred             hheeeeEEec--CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEE-
Confidence            9999999987  557999999999999999 5565555 67999999999777888888888766 9999876  2222 


Q ss_pred             CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       228 ~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                        .+.-....|+++.+-++|. ++++++
T Consensus       254 --~I~lPttsiWsa~~L~NgD-Ivvg~S  278 (745)
T KOG0301|consen  254 --VITLPTTSIWSAKVLLNGD-IVVGGS  278 (745)
T ss_pred             --EEecCccceEEEEEeeCCC-EEEecc
Confidence              3333455899999999999 666666

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=6.4e-14  Score=143.07  Aligned_cols=182  Identities=16%  Similarity=0.182  Sum_probs=146.6

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECC--CCCeEEEEeCCCeEEEEECCCC---eEEEEEcc
Q 004217           79 DARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTG---SCLKVLHG  147 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~~------L~gH~~sVtsVaFSp--DG~~LASgs~DGtVrVWDl~tg---~~l~~L~g  147 (767)
                      .-|..|++++.|++|.+|.-..++      ...|..+|++++|.|  -|-.|++++.||.|.|.+.++.   ...+....
T Consensus        68 k~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a  147 (299)
T KOG1332|consen   68 KFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA  147 (299)
T ss_pred             ccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence            368999999999999999998873      558999999999999  5678999999999999998754   22345578


Q ss_pred             CCCCcEEEEEccCC--C-----------cEEEEEeCCCeEEEEECCCCeEEEe--e-cCCCCeEEEEEcCCC----CEEE
Q 004217          148 HRRTPWVVRFHPLN--P-----------TIIASGSLDHEVRLWNASTAECIGS--R-DFYRPIASIAFHASG----ELLA  207 (767)
Q Consensus       148 H~~~V~sLafsP~d--g-----------~lLaSgS~DGtVrIWDl~tg~~i~~--l-~h~~~VtsVafSPdG----~~LA  207 (767)
                      |.-.|++++|.|..  +           +.|+||+.|+.|+||+..+++-+..  + +|.+.|+.++|.|.-    .+||
T Consensus       148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA  227 (299)
T KOG1332|consen  148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA  227 (299)
T ss_pred             cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence            99999999999931  2           5699999999999999998743332  3 589999999999965    3799


Q ss_pred             EEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004217          208 VASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD  260 (767)
Q Consensus       208 sgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~  260 (767)
                      +++.|+ |.||-.+......+...+......++.+.||..|+.|+++++..++.
T Consensus       228 S~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvt  281 (299)
T KOG1332|consen  228 SCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVT  281 (299)
T ss_pred             EecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEE
Confidence            999666 99998875434444455555678899999999999888888755443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.54  E-value=9.5e-14  Score=157.05  Aligned_cols=192  Identities=18%  Similarity=0.244  Sum_probs=161.1

Q ss_pred             eecCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC---CCCeEEEEeCCCeEEEEECC
Q 004217           65 KCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP---DGKTLASTHGDHTVKIIDCQ  137 (767)
Q Consensus        65 ~~~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSp---DG~~LASgs~DGtVrVWDl~  137 (767)
                      .|...+...+++++.+++.|++|...|.|+++++..-    .+..|...|.|+.||.   ..++||+++.|..|.|||+.
T Consensus       455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~  534 (1080)
T KOG1408|consen  455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK  534 (1080)
T ss_pred             hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence            3445677999999999999999999999999999754    5779999999999997   46789999999999999985


Q ss_pred             CC-eEEEEEccCCCCcEEEEE-------------------------------------------------ccCCCcEEEE
Q 004217          138 TG-SCLKVLHGHRRTPWVVRF-------------------------------------------------HPLNPTIIAS  167 (767)
Q Consensus       138 tg-~~l~~L~gH~~~V~sLaf-------------------------------------------------sP~dg~lLaS  167 (767)
                      .. ..+.++.+|...|+++.|                                                 .| ..+++++
T Consensus       535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t  613 (1080)
T KOG1408|consen  535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVT  613 (1080)
T ss_pred             cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEE
Confidence            43 234455555555555555                                                 44 5578999


Q ss_pred             EeCCCeEEEEECCCCeEEEeec----CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEE
Q 004217          168 GSLDHEVRLWNASTAECIGSRD----FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVH  242 (767)
Q Consensus       168 gS~DGtVrIWDl~tg~~i~~l~----h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVa  242 (767)
                      ++.|..|+|||+.+++.++.++    |.+..-.+..+|.|.|||+...|+ +.++|+-+++.+.   ...+|...|+.+.
T Consensus       614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA---~m~GHsE~VTG~k  690 (1080)
T KOG1408|consen  614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA---QMTGHSEAVTGVK  690 (1080)
T ss_pred             EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh---hhcCcchheeeee
Confidence            9999999999999999999875    567777899999999999998776 9999999999766   7889999999999


Q ss_pred             EccCCCeEEEEEe-----eCCcC
Q 004217          243 FHPHAAPLLLTAE-----VNDLD  260 (767)
Q Consensus       243 FSPDG~~LlaSgs-----vwdl~  260 (767)
                      |.+|-+.|+..++     +|.+.
T Consensus       691 F~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  691 FLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             ecccchhheeecCCceEEEEECc
Confidence            9999999988766     66554

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=3.9e-13  Score=156.33  Aligned_cols=174  Identities=18%  Similarity=0.255  Sum_probs=144.4

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~  146 (767)
                      ....+++..+|..++.|+.|-.|++-+....    .+.+|.++|.++.|+|.+++||+.+.||.|+|||++++.+...+.
T Consensus        98 p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~  177 (933)
T KOG1274|consen   98 PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT  177 (933)
T ss_pred             cceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence            4667778889999999999999999998765    588999999999999999999999999999999999998776664


Q ss_pred             cC--------CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec---CCCCeEEEEEcCCCCEEEEEEC-CcE
Q 004217          147 GH--------RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVASG-HKL  214 (767)
Q Consensus       147 gH--------~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~---h~~~VtsVafSPdG~~LAsgSd-d~V  214 (767)
                      +-        ...+..++|+| ++..|+....|++|++|+..+.+....+.   +...+.++.|+|+|+|||+++- +.|
T Consensus       178 ~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I  256 (933)
T KOG1274|consen  178 GVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQI  256 (933)
T ss_pred             cCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcE
Confidence            32        34567799999 66666677789999999999988877753   3445899999999999999994 559


Q ss_pred             EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217          215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       215 ~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla  252 (767)
                      .|||+++...       ......|.+++|.|+...+-.
T Consensus       257 ~vWnv~t~~~-------~~~~~~Vc~~aw~p~~n~it~  287 (933)
T KOG1274|consen  257 LVWNVDTHER-------HEFKRAVCCEAWKPNANAITL  287 (933)
T ss_pred             EEEecccchh-------ccccceeEEEecCCCCCeeEE
Confidence            9999998321       223568999999999885543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.51  E-value=3.4e-13  Score=155.37  Aligned_cols=180  Identities=13%  Similarity=0.094  Sum_probs=157.6

Q ss_pred             cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CC---CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE
Q 004217           70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL  142 (767)
Q Consensus        70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L---~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l  142 (767)
                      ...++++.+.-|.+.+.|...|.|-+++++++    .+   ..|.++|++++...-++.+++++.+|.++.||+.+...+
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence            34778888889999999999999999999987    23   589999999999999999999999999999999988877


Q ss_pred             EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcC
Q 004217          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYN  220 (767)
Q Consensus       143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~  220 (767)
                      ..++ -...+.++..+. ...+++.+..|-.|+++|+.+.+.++.+. |...|++++|||||++|++++-|+ |++||+.
T Consensus       529 ~~l~-l~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp  606 (910)
T KOG1539|consen  529 KSLR-LGSSITGIVYHR-VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP  606 (910)
T ss_pred             eeec-cCCCcceeeeee-hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence            7775 345678888888 88899999999999999999999999875 999999999999999999999655 9999999


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ++..+.    ...-..++.++.|||+|.+|+++-.
T Consensus       607 t~~lID----~~~vd~~~~sls~SPngD~LAT~Hv  637 (910)
T KOG1539|consen  607 TGTLID----GLLVDSPCTSLSFSPNGDFLATVHV  637 (910)
T ss_pred             Ccceee----eEecCCcceeeEECCCCCEEEEEEe
Confidence            998755    3345678999999999998777653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.51  E-value=3.6e-12  Score=132.89  Aligned_cols=191  Identities=17%  Similarity=0.154  Sum_probs=136.4

Q ss_pred             EEEEEEcCCCEEEE-EeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCeEEEEeCCC-eEEEEECCCCeEEEEEcc
Q 004217           73 IFEAGRDARRGLAS-WVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDH-TVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        73 ~~vA~sd~g~~LaS-gs~DgsIrlWd~~t~~L~---gH~~sVtsVaFSpDG~~LASgs~DG-tVrVWDl~tg~~l~~L~g  147 (767)
                      ..+++..+++.++. ...++.|++||+.+.+..   .+...+.+++|+|||++++++..++ .+.+||..+++.+..+..
T Consensus        76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~  155 (300)
T TIGR03866        76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV  155 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc
Confidence            34556667776654 456899999999875321   2234578899999999999988765 577889998887665532


Q ss_pred             CCCCcEEEEEccCCCcEE-EEEeCCCeEEEEECCCCeEEEeecCC--------CCeEEEEEcCCCCEEEEEE--CCcEEE
Q 004217          148 HRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAECIGSRDFY--------RPIASIAFHASGELLAVAS--GHKLYI  216 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lL-aSgS~DGtVrIWDl~tg~~i~~l~h~--------~~VtsVafSPdG~~LAsgS--dd~V~V  216 (767)
                       ...+..+.|+| +++++ +++..++.|++||+.+++.+..+...        .....++|+|+|++++++.  ++.|.+
T Consensus       156 -~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v  233 (300)
T TIGR03866       156 -DQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV  233 (300)
T ss_pred             -CCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence             33467899999 77766 55557999999999999877664311        1234688999999765543  455999


Q ss_pred             EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeEe
Q 004217          217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLA  269 (767)
Q Consensus       217 WDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~~~~l~  269 (767)
                      ||+++.+...    ...+...+.+++|+|+|++|+++..      +||++.++....+.
T Consensus       234 ~d~~~~~~~~----~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       234 VDAKTYEVLD----YLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             EECCCCcEEE----EEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            9998776533    2234557899999999998877642      77777655544443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.50  E-value=3.2e-13  Score=142.62  Aligned_cols=174  Identities=22%  Similarity=0.311  Sum_probs=135.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEE---ccCCCC
Q 004217           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVL---HGHRRT  151 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L---~gH~~~  151 (767)
                      ..-.++.++.-|.|++.|..++    .+.+|...|+.+.|.| +.++|++++.|.+||+||+++..++..|   .||.+.
T Consensus       104 ~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde  183 (385)
T KOG1034|consen  104 GNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE  183 (385)
T ss_pred             CCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence            3567888889999999999876    4679999999999999 5578999999999999999999999887   579999


Q ss_pred             cEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE------E-------------------Eee----cCCC----------
Q 004217          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC------I-------------------GSR----DFYR----------  192 (767)
Q Consensus       152 V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~------i-------------------~~l----~h~~----------  192 (767)
                      |.++.|++ ++.+|+|++.|.++++|++...+.      .                   -.+    -|..          
T Consensus       184 VLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd  262 (385)
T KOG1034|consen  184 VLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGD  262 (385)
T ss_pred             EEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhh
Confidence            99999999 889999999999999999973210      0                   000    0000          


Q ss_pred             --------------------------------------------CeEE--EEEcCCCCEEEEEECC-cEEEEEcCCCccc
Q 004217          193 --------------------------------------------PIAS--IAFHASGELLAVASGH-KLYIWRYNMREET  225 (767)
Q Consensus       193 --------------------------------------------~Vts--VafSPdG~~LAsgSdd-~V~VWDl~t~~~~  225 (767)
                                                                  .|+-  .+|+|.++.||.|... +|++||++..+..
T Consensus       263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~  342 (385)
T KOG1034|consen  263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP  342 (385)
T ss_pred             heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence                                                        1112  2456667788888854 4999999987764


Q ss_pred             cCCeEEec--CCCCeEEEEEccCCCeEEEEEe
Q 004217          226 SSPRIVLR--TRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       226 ~~~~~l~~--h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      . ...+..  ....|+..+|+.||..|++.++
T Consensus       343 ~-~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd  373 (385)
T KOG1034|consen  343 K-CTTLTHSKSGSTVRQTSFSRDGSILVLVCD  373 (385)
T ss_pred             c-CceEEeccccceeeeeeecccCcEEEEEeC
Confidence            3 222222  3567999999999998888776

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=1.1e-12  Score=137.82  Aligned_cols=170  Identities=13%  Similarity=0.199  Sum_probs=134.8

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEE
Q 004217           79 DARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sL  155 (767)
                      .+...+++|+-|+.|+++|+.++   ++..|...|.||.+++....+++|++|++|++||.+.......+. ....|.++
T Consensus        63 ~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~  141 (323)
T KOG1036|consen   63 ADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCM  141 (323)
T ss_pred             cCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEE
Confidence            34678889999999999999987   578999999999999988899999999999999998755555554 23478887


Q ss_pred             EEccCCCcEEEEEeCCCeEEEEECCCCeE---------------EEee--------------------c-----------
Q 004217          156 RFHPLNPTIIASGSLDHEVRLWNASTAEC---------------IGSR--------------------D-----------  189 (767)
Q Consensus       156 afsP~dg~lLaSgS~DGtVrIWDl~tg~~---------------i~~l--------------------~-----------  189 (767)
                      ..   .++.|+.|..|..|.+||+++...               +..+                    .           
T Consensus       142 ~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkya  218 (323)
T KOG1036|consen  142 DV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA  218 (323)
T ss_pred             ec---cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhcee
Confidence            76   568888888999999999876321               1000                    0           


Q ss_pred             ---CC---------CCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          190 ---FY---------RPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       190 ---h~---------~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                         |.         .+|++++|+|-...||+|+.|+ |.+||+.+.+.+.   .+..-...|.+++|+.||..|+++.+
T Consensus       219 FkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~---q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  219 FKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLK---QLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhh---hccCCCCceEEEEeccCCCeEEEEec
Confidence               10         2588999999999999999777 9999999888765   44444678999999999997777665

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.48  E-value=1.3e-12  Score=136.96  Aligned_cols=184  Identities=13%  Similarity=0.089  Sum_probs=141.5

Q ss_pred             cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCC--eEEEEeCCCeEEEEECCCCeEEEE
Q 004217           70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGK--TLASTHGDHTVKIIDCQTGSCLKV  144 (767)
Q Consensus        70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~--~LASgs~DGtVrVWDl~tg~~l~~  144 (767)
                      ...+.+.++++|..+++++-|+.+++||+.+++   +..|.++|.++.|-+...  .|++|++|++||.||.+...++.+
T Consensus        73 ~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t  152 (347)
T KOG0647|consen   73 GPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVAT  152 (347)
T ss_pred             CCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeee
Confidence            347888899999999999999999999999984   568999999999988555  899999999999999976654433


Q ss_pred             Ec-------------------------------------cC----CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe
Q 004217          145 LH-------------------------------------GH----RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE  183 (767)
Q Consensus       145 L~-------------------------------------gH----~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~  183 (767)
                      +.                                     .+    +-.+.+|+..+ +.+.++.|+-.|.+-|..+..+.
T Consensus       153 ~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~  231 (347)
T KOG0647|consen  153 LQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPN  231 (347)
T ss_pred             eeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCC
Confidence            32                                     11    22466777777 66666888888888888887753


Q ss_pred             EEEe--ec-CC---------CCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeE
Q 004217          184 CIGS--RD-FY---------RPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (767)
Q Consensus       184 ~i~~--l~-h~---------~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~L  250 (767)
                      ....  ++ |.         ..|++|+|+|....|++.+. +...+||-.....+.   ....|..+|++..|+.+|.++
T Consensus       232 ~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk---~s~~~~qpItcc~fn~~G~if  308 (347)
T KOG0647|consen  232 PKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK---TSETHPQPITCCSFNRNGSIF  308 (347)
T ss_pred             ccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhh---ccCcCCCccceeEecCCCCEE
Confidence            3222  11 22         25788999998777777765 559999987776544   567789999999999999977


Q ss_pred             EEEEe-eC
Q 004217          251 LLTAE-VN  257 (767)
Q Consensus       251 laSgs-vw  257 (767)
                      +.+.+ +|
T Consensus       309 aYA~gYDW  316 (347)
T KOG0647|consen  309 AYALGYDW  316 (347)
T ss_pred             EEEeeccc
Confidence            66544 44

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.48  E-value=2e-12  Score=136.66  Aligned_cols=141  Identities=26%  Similarity=0.422  Sum_probs=118.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCC----CCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEE
Q 004217           80 ARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPD----GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~~L~gH~~sVtsVaFSpD----G~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sL  155 (767)
                      +...++..-.|+-|++......  ..|......++|+-|    ..+||.|+.-|.|+|.|+.++++...+.+|...|..+
T Consensus        64 ~rvtiy~c~~d~~ir~lq~y~D--~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINei  141 (385)
T KOG1034|consen   64 NRVTIYECPGDGGIRLLQSYAD--EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEI  141 (385)
T ss_pred             cEEEEEEECCccceeeeeeccC--CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhh
Confidence            3344555555665555443222  257888889999874    3478899999999999999999999999999999999


Q ss_pred             EEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec----CCCCeEEEEEcCCCCEEEEEECC-cEEEEEcCCC
Q 004217          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD----FYRPIASIAFHASGELLAVASGH-KLYIWRYNMR  222 (767)
Q Consensus       156 afsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~----h~~~VtsVafSPdG~~LAsgSdd-~V~VWDl~t~  222 (767)
                      .|+|.+.++++++|.|.+||+||+++..|+..++    |.+.|.++.|+++|.+|++++-| .|++|++...
T Consensus       142 k~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  142 KFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             hcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence            9999888999999999999999999999999974    89999999999999999999855 5999999843

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.47  E-value=2e-12  Score=141.37  Aligned_cols=191  Identities=18%  Similarity=0.144  Sum_probs=146.0

Q ss_pred             eEEEEE--EcCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCe
Q 004217           72 QIFEAG--RDARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS  140 (767)
Q Consensus        72 ~~~vA~--sd~g~~LaSgs~DgsIrlWd~~t~--------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~  140 (767)
                      ..++++  ......+++|...|.|-+||+.+.        .+..|..+|.++.|+| +-..+++.+.||+|++-|++++.
T Consensus       189 it~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i  268 (498)
T KOG4328|consen  189 ITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNI  268 (498)
T ss_pred             eEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchh
Confidence            344444  345688999999999999999532        2568999999999999 77889999999999999998764


Q ss_pred             EE--EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe--ecCCCCeEEEEEcCCCC-EEEEEECC-cE
Q 004217          141 CL--KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFHASGE-LLAVASGH-KL  214 (767)
Q Consensus       141 ~l--~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~--l~h~~~VtsVafSPdG~-~LAsgSdd-~V  214 (767)
                      .-  ..+......+..+.|+. +...++.+..=|...+||++++.....  .-|...|++++++|... +||+++-| .+
T Consensus       269 ~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~  347 (498)
T KOG4328|consen  269 SEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTA  347 (498)
T ss_pred             hHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcce
Confidence            33  33333455677888888 555555565556999999998765332  33778999999999876 67888854 59


Q ss_pred             EEEEcCCCcccc-CCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCC
Q 004217          215 YIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSE  263 (767)
Q Consensus       215 ~VWDl~t~~~~~-~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~  263 (767)
                      +|||++.-.... +......|...|.+..|||++-.|++++.+..++.++
T Consensus       348 kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  348 KIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD  397 (498)
T ss_pred             eeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence            999998765433 2345678999999999999998899999866666433

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.47  E-value=7.8e-13  Score=138.83  Aligned_cols=193  Identities=18%  Similarity=0.277  Sum_probs=152.3

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCC
Q 004217           83 GLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNP  162 (767)
Q Consensus        83 ~LaSgs~DgsIrlWd~~t~~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg  162 (767)
                      ++++.-.+++++.--  ...+.||++.|+.++.......+.+++.|.+.+||.+++|+|+.++.||.+.|++|.|++ .+
T Consensus       126 rivssFk~~t~~~~l--vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~-s~  202 (481)
T KOG0300|consen  126 RIVSSFKDGTVKFRL--VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN-SG  202 (481)
T ss_pred             hheeeecCCceeEee--hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecc-cc
Confidence            344444555532211  125789999999999988778999999999999999999999999999999999999999 89


Q ss_pred             cEEEEEeCCCeEEEEEC------CC--------Ce----------------------EE----Ee-ecCCCCeEEEEEcC
Q 004217          163 TIIASGSLDHEVRLWNA------ST--------AE----------------------CI----GS-RDFYRPIASIAFHA  201 (767)
Q Consensus       163 ~lLaSgS~DGtVrIWDl------~t--------g~----------------------~i----~~-l~h~~~VtsVafSP  201 (767)
                      .++++++.|++.+||..      ..        ++                      .+    .. .+|...|.+..|-.
T Consensus       203 ~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~  282 (481)
T KOG0300|consen  203 LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA  282 (481)
T ss_pred             ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc
Confidence            99999999999999962      11        00                      01    11 24677788889999


Q ss_pred             CCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCc
Q 004217          202 SGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYW  275 (767)
Q Consensus       202 dG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~  275 (767)
                      .|+.+++++.|+ ..+||+++++.+.   .+.+|....+.++-+|+.+.+++++.     .||++  +....+..+.||.
T Consensus       283 gg~Q~vTaSWDRTAnlwDVEtge~v~---~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQGHt  357 (481)
T KOG0300|consen  283 GGQQMVTASWDRTANLWDVETGEVVN---ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQGHT  357 (481)
T ss_pred             CcceeeeeeccccceeeeeccCceec---cccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecccc
Confidence            999999999776 9999999999766   78899999999999999986666554     78877  4566777788886


Q ss_pred             cCCCCeEE
Q 004217          276 RYPPPVIC  283 (767)
Q Consensus       276 ~~p~~~v~  283 (767)
                      .-...++|
T Consensus       358 dtVTS~vF  365 (481)
T KOG0300|consen  358 DTVTSVVF  365 (481)
T ss_pred             cceeEEEE
Confidence            54433333

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.46  E-value=3.8e-12  Score=146.85  Aligned_cols=210  Identities=14%  Similarity=0.141  Sum_probs=166.4

Q ss_pred             EEEEeCCCeEEEEeCCCCC----------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE---ccCCC
Q 004217           84 LASWVEAESLHHLRPKYCP----------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL---HGHRR  150 (767)
Q Consensus        84 LaSgs~DgsIrlWd~~t~~----------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L---~gH~~  150 (767)
                      +..--.+...+.|+.....          ++.....+++++.++-|++.+.|...|+|-+|++++|-....|   ..|.+
T Consensus       415 ~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~  494 (910)
T KOG1539|consen  415 ITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG  494 (910)
T ss_pred             eEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccC
Confidence            3334455667777776543          3344478999999999999999999999999999999888888   58999


Q ss_pred             CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCe
Q 004217          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPR  229 (767)
Q Consensus       151 ~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~  229 (767)
                      +|+.++... -++.+++++.||-+++||..+...+..+.....+.++.++.....++.+.++- |+++|+.+.+.++   
T Consensus       495 ~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR---  570 (910)
T KOG1539|consen  495 EVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR---  570 (910)
T ss_pred             ceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH---
Confidence            999999988 77899999999999999999999888888889999999999888898888776 9999999988766   


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceee
Q 004217          230 IVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRP  309 (767)
Q Consensus       230 ~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~p  309 (767)
                      .+.+|.+.|++++|||||++|++++-+-.++.                       ||..++..+..    -....|+...
T Consensus       571 ~f~gh~nritd~~FS~DgrWlisasmD~tIr~-----------------------wDlpt~~lID~----~~vd~~~~sl  623 (910)
T KOG1539|consen  571 EFWGHGNRITDMTFSPDGRWLISASMDSTIRT-----------------------WDLPTGTLIDG----LLVDSPCTSL  623 (910)
T ss_pred             HhhccccceeeeEeCCCCcEEEEeecCCcEEE-----------------------EeccCcceeee----EecCCcceee
Confidence            78899999999999999999988875222222                       22111111100    0123467788


Q ss_pred             EEecCCCEEEEeecC
Q 004217          310 SFVRDDERISLQHTE  324 (767)
Q Consensus       310 sFSpDg~rIva~~~~  324 (767)
                      .|||+|..++..|-+
T Consensus       624 s~SPngD~LAT~Hvd  638 (910)
T KOG1539|consen  624 SFSPNGDFLATVHVD  638 (910)
T ss_pred             EECCCCCEEEEEEec
Confidence            999999999985553

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.45  E-value=1e-12  Score=148.79  Aligned_cols=242  Identities=16%  Similarity=0.143  Sum_probs=172.3

Q ss_pred             ceeecccccceecCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC---------C----------------------
Q 004217           55 SKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCP---------L----------------------  103 (767)
Q Consensus        55 sk~~wd~~~~~~~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~---------L----------------------  103 (767)
                      +.-+|+.....|+.....   +..-....+++++.|++||+|++..+.         +                      
T Consensus       369 S~ciW~Ve~~p~nv~~~~---~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~  445 (1080)
T KOG1408|consen  369 SACIWDVENLPCNVHSPT---AACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASA  445 (1080)
T ss_pred             cceeeeeccccccccCcc---cccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccC
Confidence            455677665555522211   111234558899999999999997630         0                      


Q ss_pred             ----------CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEcc--CCCcEEEEEeCC
Q 004217          104 ----------SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP--LNPTIIASGSLD  171 (767)
Q Consensus       104 ----------~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP--~dg~lLaSgS~D  171 (767)
                                .+..-.+.+++.||||++||+|..-|+++|||+...+.+..+..|...|.|+.|+-  ...++|++++.|
T Consensus       446 ~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrd  525 (1080)
T KOG1408|consen  446 GIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRD  525 (1080)
T ss_pred             CcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCC
Confidence                      02334689999999999999999999999999999888888999999999999984  135689999999


Q ss_pred             CeEEEEECCCCe-EEEee-cC-------------------------------------------------CCCeEEEEEc
Q 004217          172 HEVRLWNASTAE-CIGSR-DF-------------------------------------------------YRPIASIAFH  200 (767)
Q Consensus       172 GtVrIWDl~tg~-~i~~l-~h-------------------------------------------------~~~VtsVafS  200 (767)
                      .-|++||+...- ++.++ +|                                                 +..++.++..
T Consensus       526 RlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vd  605 (1080)
T KOG1408|consen  526 RLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVD  605 (1080)
T ss_pred             ceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeC
Confidence            999999985321 11110 01                                                 1245678888


Q ss_pred             CCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCC
Q 004217          201 ASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGY  274 (767)
Q Consensus       201 PdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~  274 (767)
                      |..+++++++.|+ |+|||+..+++.+....-.+|.+....|...|.|.|++++++     +.|+.++++   +++..||
T Consensus       606 p~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEc---vA~m~GH  682 (1080)
T KOG1408|consen  606 PTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGEC---VAQMTGH  682 (1080)
T ss_pred             CCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchh---hhhhcCc
Confidence            8899999999776 999999999987633344456778889999999999999988     445555555   4455677


Q ss_pred             ccCCCCeEEEecCCCCCCCceeeccCCCCCCce
Q 004217          275 WRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL  307 (767)
Q Consensus       275 ~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil  307 (767)
                      ........+     ..|+.||.+-..+.-+-+|
T Consensus       683 sE~VTG~kF-----~nDCkHlISvsgDgCIFvW  710 (1080)
T KOG1408|consen  683 SEAVTGVKF-----LNDCKHLISVSGDGCIFVW  710 (1080)
T ss_pred             chheeeeee-----cccchhheeecCCceEEEE
Confidence            554433332     4467777766444443344

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.45  E-value=1.5e-12  Score=141.93  Aligned_cols=175  Identities=18%  Similarity=0.206  Sum_probs=139.0

Q ss_pred             EEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEE-EEEccCC
Q 004217           76 AGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCL-KVLHGHR  149 (767)
Q Consensus        76 A~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l-~~L~gH~  149 (767)
                      +.......|++|+.|++|++||+.+++    +.-|.+.|.+++|+| ....|++|+.|++|++.|++..... ..++ -.
T Consensus       251 ~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~  329 (463)
T KOG0270|consen  251 WNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FD  329 (463)
T ss_pred             hccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-ec
Confidence            344567889999999999999999983    567999999999999 7889999999999999999843222 2222 34


Q ss_pred             CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC-eEEEeec-CCCCeEEEEEcCCCC-EEEEEECCc-EEEEEcCCCccc
Q 004217          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSRD-FYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREET  225 (767)
Q Consensus       150 ~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg-~~i~~l~-h~~~VtsVafSPdG~-~LAsgSdd~-V~VWDl~t~~~~  225 (767)
                      +.|-.+.|+|.....++++..||+|+-+|+|.. +++.++. |...|.++++++.-. ++++++.++ |++|++......
T Consensus       330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~  409 (463)
T KOG0270|consen  330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK  409 (463)
T ss_pred             cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence            678999999978888999999999999999975 7888765 999999999998765 677777666 999998755432


Q ss_pred             cCCeEEecC---CCCeEEEEEccCCCeEEEEEe
Q 004217          226 SSPRIVLRT---RRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       226 ~~~~~l~~h---~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .    ...|   -+...|.++.|+-.++++.++
T Consensus       410 ~----v~~~~~~~~rl~c~~~~~~~a~~la~GG  438 (463)
T KOG0270|consen  410 S----VKEHSFKLGRLHCFALDPDVAFTLAFGG  438 (463)
T ss_pred             c----cccccccccceeecccCCCcceEEEecC
Confidence            1    2222   233678889999887777665

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=1.1e-11  Score=130.11  Aligned_cols=271  Identities=17%  Similarity=0.137  Sum_probs=178.1

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC--CCCeEEEEeCCCeEEEEECCC---
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQT---  138 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~--------~L~gH~~sVtsVaFSp--DG~~LASgs~DGtVrVWDl~t---  138 (767)
                      .-.+.+.-.|+++++++.|++|++||.+..        ..+.|.++|..|.|.+  -|+.+|+++.|++++||.-..   
T Consensus        16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~   95 (361)
T KOG2445|consen   16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE   95 (361)
T ss_pred             eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc
Confidence            334556678999999999999999996543        3568999999999987  789999999999999997521   


Q ss_pred             ---C---eEEEEEccCCCCcEEEEEccCC-CcEEEEEeCCCeEEEEECCCCeE------EEeec--------CCCCeEEE
Q 004217          139 ---G---SCLKVLHGHRRTPWVVRFHPLN-PTIIASGSLDHEVRLWNASTAEC------IGSRD--------FYRPIASI  197 (767)
Q Consensus       139 ---g---~~l~~L~gH~~~V~sLafsP~d-g~lLaSgS~DGtVrIWDl~tg~~------i~~l~--------h~~~VtsV  197 (767)
                         +   ....++...+..|+.|.|.|.. +-.+++++.||.+|||+......      ..++.        +.....|+
T Consensus        96 ~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cv  175 (361)
T KOG2445|consen   96 EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCV  175 (361)
T ss_pred             ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEE
Confidence               1   2345667778899999999943 44789999999999998765332      22232        55678899


Q ss_pred             EEcCCC---CEEEEEECC------cEEEEEcCCCc-cccCCeEEecCCCCeEEEEEccCCC---eEEEEEe-----eCCc
Q 004217          198 AFHASG---ELLAVASGH------KLYIWRYNMRE-ETSSPRIVLRTRRSLRAVHFHPHAA---PLLLTAE-----VNDL  259 (767)
Q Consensus       198 afSPdG---~~LAsgSdd------~V~VWDl~t~~-~~~~~~~l~~h~~~VtsVaFSPDG~---~LlaSgs-----vwdl  259 (767)
                      .|+|..   .+||+|++.      +++||...... .......+.+|..+|++|+|.|+--   ++++++.     +|++
T Consensus       176 sWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v  255 (361)
T KOG2445|consen  176 SWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKV  255 (361)
T ss_pred             eeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEE
Confidence            999753   489999976      69999876554 3333456678999999999999632   3444433     3444


Q ss_pred             CCCCcceeEeecCCCccCCCCeEEEecCCCC-CCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCccccccccc
Q 004217          260 DSSESSLTLATSPGYWRYPPPVICMAGAHSS-SHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRS  338 (767)
Q Consensus       260 ~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ss-d~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~s  338 (767)
                      ........   ..+.         ....... -...+.....+...++|.+.|.--|..+..                 +
T Consensus       256 ~~~~s~i~---~ee~---------~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS-----------------t  306 (361)
T KOG2445|consen  256 KVARSAIE---EEEV---------LAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS-----------------T  306 (361)
T ss_pred             eeccchhh---hhcc---------cCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee-----------------c
Confidence            32111000   0000         0000011 123344445567778898888877766664                 1


Q ss_pred             CCceeeeeccCCCCceeeeeccCCCCCCCCCCC
Q 004217          339 SSSVRLLTYSTPSGQYELVLSPIASNRSSPMPD  371 (767)
Q Consensus       339 s~~~~l~~~~~~~~q~~~~~~p~~p~~~~~~~~  371 (767)
                      ...+.+..|...=...-.+.+-+.-..+.+.++
T Consensus       307 GdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~  339 (361)
T KOG2445|consen  307 GDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPD  339 (361)
T ss_pred             CCCceeeehhhhhhhhheeeeEEeccCCCCCcc
Confidence            222346667664444445555544333333333

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.44  E-value=9.7e-12  Score=137.11  Aligned_cols=174  Identities=17%  Similarity=0.250  Sum_probs=139.4

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC--------
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--------  139 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg--------  139 (767)
                      ++++.+. .+..+++|..+|.|.+|+..+.    +...|.+.|.+++.-.+|.+|- |+.|..|..||-.-.        
T Consensus       249 Vl~v~F~-engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elP  326 (626)
T KOG2106|consen  249 VLCVTFL-ENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELP  326 (626)
T ss_pred             EEEEEEc-CCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCc
Confidence            5566664 4556778999999999999776    3449999999999999997665 999999999983100        


Q ss_pred             --------------e------------------EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe
Q 004217          140 --------------S------------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS  187 (767)
Q Consensus       140 --------------~------------------~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~  187 (767)
                                    .                  ......+|.+..+.++.+| ..+.+++++.|+.+++|+  ..+.+..
T Consensus       327 e~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt  403 (626)
T KOG2106|consen  327 EQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWT  403 (626)
T ss_pred             hhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEE
Confidence                          0                  0011247889999999999 889999999999999999  6677777


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          188 RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       188 l~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .....++.|+.|+|.| .+|.|.. +...+.|..+...+.   .... ..+++.+.|+|+|.+|+.++.
T Consensus       404 ~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~---~~~d-~~~ls~v~ysp~G~~lAvgs~  467 (626)
T KOG2106|consen  404 KIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT---IHTD-NEQLSVVRYSPDGAFLAVGSH  467 (626)
T ss_pred             EEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE---EEec-CCceEEEEEcCCCCEEEEecC
Confidence            7778999999999999 8888884 559999999865443   3333 889999999999998777664

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.44  E-value=4e-12  Score=139.77  Aligned_cols=197  Identities=15%  Similarity=0.205  Sum_probs=155.2

Q ss_pred             Ccceeecccccceec-----CCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCC-CCCeEEEEECCCCC-e
Q 004217           53 HSSKRLLGETARKCS-----GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPP-PRSTIAAAFSPDGK-T  121 (767)
Q Consensus        53 ~~sk~~wd~~~~~~~-----~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH-~~sVtsVaFSpDG~-~  121 (767)
                      ..-.++|+-...-+.     ....+.++.......+|++++..|.|.+-.+.++.    +... ...|.-+.|++..+ +
T Consensus       100 ~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~l  179 (673)
T KOG4378|consen  100 SGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFL  179 (673)
T ss_pred             CceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccccccee
Confidence            334566765533332     12236666677788888888888888888887762    3322 34567899999555 5


Q ss_pred             EEEEeCCCeEEEEECCCCeEEEE-EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEc
Q 004217          122 LASTHGDHTVKIIDCQTGSCLKV-LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH  200 (767)
Q Consensus       122 LASgs~DGtVrVWDl~tg~~l~~-L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafS  200 (767)
                      |.+++++|.|.+||+....++.. .+.|..+...|+|+|.+..+|++.+.|+.|.+||++..+....+....+...++|+
T Consensus       180 L~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~  259 (673)
T KOG4378|consen  180 LSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFS  259 (673)
T ss_pred             eEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeec
Confidence            67789999999999987766544 47899999999999988999999999999999999988888888888899999999


Q ss_pred             CCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217          201 ASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       201 PdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla  252 (767)
                      ++|.+|+.|...+ |..||++..+.  +......|...|++|+|-|.- .+++
T Consensus       260 ~~G~~L~aG~s~G~~i~YD~R~~k~--Pv~v~sah~~sVt~vafq~s~-tvlt  309 (673)
T KOG4378|consen  260 ECGTYLCAGNSKGELIAYDMRSTKA--PVAVRSAHDASVTRVAFQPSP-TVLT  309 (673)
T ss_pred             CCceEEEeecCCceEEEEecccCCC--CceEeeecccceeEEEeeecc-eeee
Confidence            9999999998655 99999998775  446788899999999998875 3444

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.44  E-value=1.3e-12  Score=146.30  Aligned_cols=211  Identities=20%  Similarity=0.148  Sum_probs=144.3

Q ss_pred             CCCCCcceecccccccccCCCccCcceeecccccceecCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCC--------C
Q 004217           30 HRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKY--------C  101 (767)
Q Consensus        30 ~r~sk~rnVf~~~~kre~~~~~~~~sk~~wd~~~~~~~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t--------~  101 (767)
                      ++.|||+|--....++|.+..++.+..---..+.+..+    ..++++.-++.       .+++-+.-+..        +
T Consensus         5 F~aSKfknt~p~vPk~E~~i~di~vG~~~~~~n~I~aS----~~flAFn~e~~-------G~~lgvlPl~~~Gr~~r~i~   73 (1012)
T KOG1445|consen    5 FAASKFKNTTPKVPKKEETIFDIPVGNLSCTNNGIHAS----ADFLAFNIEGE-------GGKLGVLPLTAKGRRTRDIG   73 (1012)
T ss_pred             cchhhcccCCCCCCchhhheeecccccccccCCCcccc----cceEEEeecCC-------CceEEEEeccccCccccccc
Confidence            57899999998888888887776554322222222222    33344432221       11222222221        2


Q ss_pred             CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeE--E---EEEccCC-CCcEEEEEccCCCcEEEEEeCCCeE
Q 004217          102 PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSC--L---KVLHGHR-RTPWVVRFHPLNPTIIASGSLDHEV  174 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~--l---~~L~gH~-~~V~sLafsP~dg~lLaSgS~DGtV  174 (767)
                      .+.+|.+.|+++.|+| +..+||+|+.|..|+||.+..|-.  +   ....+|. -.|.++.|||....++++ +..|++
T Consensus        74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s-~a~g~v  152 (1012)
T KOG1445|consen   74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILAS-GAHGSV  152 (1012)
T ss_pred             eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEe-ccCceE
Confidence            4678999999999999 777999999999999999975421  1   1223444 467899999955556665 468899


Q ss_pred             EEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCC-eEEEEEccCCCeEE
Q 004217          175 RLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRS-LRAVHFHPHAAPLL  251 (767)
Q Consensus       175 rIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~-VtsVaFSPDG~~Ll  251 (767)
                      +|||+.+++.+..+ +|...|.+..|+.||.+|+++..|+ |+|||-+....  ......+|.+. -..+.|--+-..|+
T Consensus       153 ~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~--piQ~te~H~~~rdsRv~w~Gn~~rli  230 (1012)
T KOG1445|consen  153 YITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASME--PIQTTEGHGGMRDSRVLWAGNWERLI  230 (1012)
T ss_pred             EEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCC--ccccccccccchhheeeeccchhhhh
Confidence            99999999988775 5899999999999999999998777 99999987654  23355667443 23455655544555


Q ss_pred             EEE
Q 004217          252 LTA  254 (767)
Q Consensus       252 aSg  254 (767)
                      ++|
T Consensus       231 sTG  233 (1012)
T KOG1445|consen  231 STG  233 (1012)
T ss_pred             hcc
Confidence            544

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=1.6e-12  Score=141.12  Aligned_cols=185  Identities=20%  Similarity=0.157  Sum_probs=142.5

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc-
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-  146 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~-  146 (767)
                      ..++++..++..|++|..||++|+|+....    .+..|...|.+++|||||++|++-+.| ..+||++++|..+.... 
T Consensus       147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             ceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            578888889999999999999999995443    356899999999999999999999999 99999999997766554 


Q ss_pred             -cCCCCcEEEEEccCCC-----cEEEEEeCCCeEEEEECCCCeE------EEeecCCCCeEEEEEcCCCCEEEEEECCc-
Q 004217          147 -GHRRTPWVVRFHPLNP-----TIIASGSLDHEVRLWNASTAEC------IGSRDFYRPIASIAFHASGELLAVASGHK-  213 (767)
Q Consensus       147 -gH~~~V~sLafsP~dg-----~lLaSgS~DGtVrIWDl~tg~~------i~~l~h~~~VtsVafSPdG~~LAsgSdd~-  213 (767)
                       .-......++|+- ++     .+++.-..-+.|+.||+.....      .+.......|++++.+++|+++|.|+-++ 
T Consensus       226 ~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs  304 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS  304 (398)
T ss_pred             cccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence             2223456778887 55     3334444556788877754322      11123456899999999999999999554 


Q ss_pred             EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004217          214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD  260 (767)
Q Consensus       214 V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~  260 (767)
                      |-|++..+-+...  .....|...|+.|.|+||.++++..+..|...
T Consensus       305 Vai~~~~~lq~~~--~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~  349 (398)
T KOG0771|consen  305 VAIYDAKSLQRLQ--YVKEAHLGFVTGLTFSPDSRYLASVSSDNEAA  349 (398)
T ss_pred             EEEEEeceeeeeE--eehhhheeeeeeEEEcCCcCcccccccCCcee
Confidence            9999988777644  34567889999999999999888766655433

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.42  E-value=3.4e-12  Score=137.45  Aligned_cols=174  Identities=20%  Similarity=0.240  Sum_probs=142.7

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217           79 DARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~-----------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L~  146 (767)
                      -+...|++|++|.+|.+|++-..           .|.+|...|--++|+| -.+.|++++.|.+|.|||+.+|+.+-++.
T Consensus        92 fnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~  171 (472)
T KOG0303|consen   92 FNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD  171 (472)
T ss_pred             cCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC
Confidence            46788999999999999998653           3679999999999999 55789999999999999999999888887


Q ss_pred             cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCC-CeEEEEEcCCCCEEEEEEC---Cc-EEEEEcC
Q 004217          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYR-PIASIAFHASGELLAVASG---HK-LYIWRYN  220 (767)
Q Consensus       147 gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~-~VtsVafSPdG~~LAsgSd---d~-V~VWDl~  220 (767)
                       |.+.|+++.|+. ++.+|++.+.|+.|||||.++++.+..- .|.+ ....+.|-.+|.++.+|-.   ++ +-+||..
T Consensus       172 -hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~  249 (472)
T KOG0303|consen  172 -HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPN  249 (472)
T ss_pred             -CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcc
Confidence             999999999999 9999999999999999999999999885 4543 3456678889996666642   33 9999987


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ..+... ........+.|.---|.+|.+.+...|+
T Consensus       250 nl~eP~-~~~elDtSnGvl~PFyD~dt~ivYl~GK  283 (472)
T KOG0303|consen  250 NLEEPI-ALQELDTSNGVLLPFYDPDTSIVYLCGK  283 (472)
T ss_pred             cccCcc-eeEEeccCCceEEeeecCCCCEEEEEec
Confidence            665432 1223445677878888999987766665

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.41  E-value=2.3e-12  Score=141.65  Aligned_cols=186  Identities=17%  Similarity=0.154  Sum_probs=149.3

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ..|++......++++|+..+.|+|||++..    .+++|+..|+++.++-...+||+++..|.|.|..+.++.....|..
T Consensus        82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~  161 (673)
T KOG4378|consen   82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI  161 (673)
T ss_pred             HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence            344444455689999999999999999854    5889999999999999999999999999999999999987777764


Q ss_pred             C-CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee--cCCCCeEEEEEcCCCC-EEEEEE-CCcEEEEEcCCC
Q 004217          148 H-RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFHASGE-LLAVAS-GHKLYIWRYNMR  222 (767)
Q Consensus       148 H-~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l--~h~~~VtsVafSPdG~-~LAsgS-dd~V~VWDl~t~  222 (767)
                      . ...|.-+.|+|....+|.+++.+|.|.+||+....++..+  .|..+...|+|+|... +|++-+ |.+|.+||.+..
T Consensus       162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~  241 (673)
T KOG4378|consen  162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ  241 (673)
T ss_pred             CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence            4 3456689999966678888999999999999987777664  4889999999999876 455555 555999999866


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004217          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (767)
Q Consensus       223 ~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s  261 (767)
                      ....    ...-..+...|+|+++|.+|+++.+     .+|++.
T Consensus       242 ~s~~----~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  242 ASTD----RLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             cccc----eeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence            5433    2223458899999999998777654     445554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=9.6e-11  Score=132.69  Aligned_cols=158  Identities=14%  Similarity=0.171  Sum_probs=118.4

Q ss_pred             CeEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeC---CCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcE
Q 004217           91 ESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI  164 (767)
Q Consensus        91 gsIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~---DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~l  164 (767)
                      ..|.+||....   ++..|...+...+|+|||+.|+..+.   +..|++||+.+++. ..+..+.+.+...+|+| +++.
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SP-DG~~  259 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSP-DGRK  259 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECC-CCCE
Confidence            36778887654   36678889999999999999988764   46899999998875 34555667778899999 6665


Q ss_pred             E-EEEeCCCe--EEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC----cEEEEEcCCCccccCCeEEecCCCC
Q 004217          165 I-ASGSLDHE--VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRS  237 (767)
Q Consensus       165 L-aSgS~DGt--VrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd----~V~VWDl~t~~~~~~~~~l~~h~~~  237 (767)
                      | ++.+.++.  |.+||+.+++......+........|+|||+.|+..++.    .|++||+..++..    .+..+...
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~----~lt~~~~~  335 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR----RISFGGGR  335 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE----EeecCCCc
Confidence            4 56666665  777799888776655555566789999999998887742    2888998765432    23334556


Q ss_pred             eEEEEEccCCCeEEEEE
Q 004217          238 LRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       238 VtsVaFSPDG~~LlaSg  254 (767)
                      +....|+|||++|+.+.
T Consensus       336 ~~~~~~SpdG~~ia~~~  352 (435)
T PRK05137        336 YSTPVWSPRGDLIAFTK  352 (435)
T ss_pred             ccCeEECCCCCEEEEEE
Confidence            67789999999888765

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=2.6e-11  Score=137.20  Aligned_cols=157  Identities=14%  Similarity=0.185  Sum_probs=111.5

Q ss_pred             CCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCC---CeEEEEECCCCeE--EEEEccCCCCcEEEEEccCC
Q 004217           90 AESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSC--LKVLHGHRRTPWVVRFHPLN  161 (767)
Q Consensus        90 DgsIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~D---GtVrVWDl~tg~~--l~~L~gH~~~V~sLafsP~d  161 (767)
                      +..|.+||....   .+..|...+..++|||||++|+.++.+   ..|++||+.+++.  +..+.+|   ...++|+| +
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP-D  258 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP-D  258 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC-C
Confidence            468999998654   356788889999999999999988754   4799999988753  3334444   34689999 7


Q ss_pred             CcEEEEE-eCCCeEEEE--ECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC--CcEEEEEcCCCccccCCeEEecCCC
Q 004217          162 PTIIASG-SLDHEVRLW--NASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIVLRTRR  236 (767)
Q Consensus       162 g~lLaSg-S~DGtVrIW--Dl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~t~~~~~~~~~l~~h~~  236 (767)
                      ++.|+.+ +.+|.+.||  |+.+++......+...+....|+|||+.|+..++  +...||+++......   ....+..
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~---~~l~~~~  335 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA---SLVGGRG  335 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEecCCC
Confidence            7777665 468866555  7777766555556667888999999998887764  347777765432211   1223333


Q ss_pred             CeEEEEEccCCCeEEEEEe
Q 004217          237 SLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       237 ~VtsVaFSPDG~~LlaSgs  255 (767)
                        ..+.|+|||+++++++.
T Consensus       336 --~~~~~SpDG~~ia~~~~  352 (429)
T PRK01742        336 --YSAQISADGKTLVMING  352 (429)
T ss_pred             --CCccCCCCCCEEEEEcC
Confidence              46789999998877654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.39  E-value=3.8e-12  Score=137.56  Aligned_cols=145  Identities=22%  Similarity=0.357  Sum_probs=120.7

Q ss_pred             CCCeEEEEECCCCC-eEEEEeCCCeEEEEECCCC---------eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEE
Q 004217          107 PRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTG---------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (767)
Q Consensus       107 ~~sVtsVaFSpDG~-~LASgs~DGtVrVWDl~tg---------~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrI  176 (767)
                      ..+|..+.|.++.. .|++|+.|..|+||-+..+         +.+..|..|...|+++.|+| ++++++||+.+|.|.+
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFL   91 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEE
Confidence            35799999999665 9999999999999988542         23456788999999999999 9999999999999999


Q ss_pred             EECC--------C-----C---eEEEe-ecCCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCccccCCeEEecCCCCe
Q 004217          177 WNAS--------T-----A---ECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSL  238 (767)
Q Consensus       177 WDl~--------t-----g---~~i~~-l~h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~~~~~l~~h~~~V  238 (767)
                      |-..        +     .   ...+. ..|...|..++|+|+++++++++ ++.+++||+..+....   .+..|...|
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~---~~~dh~~yv  168 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA---ILDDHEHYV  168 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe---ecccccccc
Confidence            9765        2     1   11111 34889999999999999999999 5559999999998765   788899999


Q ss_pred             EEEEEccCCCeEEEEEe
Q 004217          239 RAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       239 tsVaFSPDG~~LlaSgs  255 (767)
                      ..++|.|-++++++-+.
T Consensus       169 qgvawDpl~qyv~s~s~  185 (434)
T KOG1009|consen  169 QGVAWDPLNQYVASKSS  185 (434)
T ss_pred             ceeecchhhhhhhhhcc
Confidence            99999999998776544

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=9.3e-12  Score=136.23  Aligned_cols=182  Identities=13%  Similarity=0.098  Sum_probs=147.1

Q ss_pred             eEEEEEEcCCC-EEEEEeCCCeEEEEeCCCCC------CCCCC-CCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE
Q 004217           72 QIFEAGRDARR-GLASWVEAESLHHLRPKYCP------LSPPP-RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK  143 (767)
Q Consensus        72 ~~~vA~sd~g~-~LaSgs~DgsIrlWd~~t~~------L~gH~-~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~  143 (767)
                      .....+.++|. .+++++...-+..||+.+.+      +.++. ..+.....|+++++|+..+..|.|.|....+++.+.
T Consensus       260 i~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~  339 (514)
T KOG2055|consen  260 IQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELIT  339 (514)
T ss_pred             cceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhh
Confidence            33344556666 88889899999999998863      33444 467889999999999999999999999999999998


Q ss_pred             EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCe--EEEEEcCCCCEEEEEECCc-EEEEEcC
Q 004217          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI--ASIAFHASGELLAVASGHK-LYIWRYN  220 (767)
Q Consensus       144 ~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~V--tsVafSPdG~~LAsgSdd~-V~VWDl~  220 (767)
                      .++ -.+.|..+.|+. +++.|+.++.+|.|.+||++...+++.+...+.|  ++++.+++|.|||+|++.+ |.|||.+
T Consensus       340 s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~  417 (514)
T KOG2055|consen  340 SFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN  417 (514)
T ss_pred             eee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence            887 467899999998 8898998899999999999999999998766666  4677789999999999877 9999976


Q ss_pred             CCcc---ccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          221 MREE---TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       221 t~~~---~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +...   .++...+..-...|++++|++|++.|+.++.
T Consensus       418 s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~  455 (514)
T KOG2055|consen  418 SCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASR  455 (514)
T ss_pred             hhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence            4322   2223344455778999999999996666554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=5.2e-11  Score=135.31  Aligned_cols=188  Identities=15%  Similarity=0.118  Sum_probs=151.4

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----CCCCC-CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPP-PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----~L~gH-~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L  145 (767)
                      .+++|.+.....|+.+-.++.|.+|++...     .+.++ .+.|.+++|+ ++..|++.+.+|.|.-||+.+++.+..+
T Consensus        28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~  106 (691)
T KOG2048|consen   28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNI  106 (691)
T ss_pred             eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEe
Confidence            778889889899999999999999999875     23444 5679999999 5667888999999999999999999999


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe--ec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCC
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNM  221 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~--l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t  221 (767)
                      ..-.+.|++++.+| .+..++.|+.||.+..++...++....  +. ..+.|.+++|+|++..|+.|+.|+ |++||+..
T Consensus       107 d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~  185 (691)
T KOG2048|consen  107 DSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS  185 (691)
T ss_pred             cCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence            98899999999999 888999999999888888888877655  33 458999999999999999999877 99999998


Q ss_pred             CccccCCeEEe----c-CCCCeEEEEEccCCCeEEEEEe-----eCCcCCC
Q 004217          222 REETSSPRIVL----R-TRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS  262 (767)
Q Consensus       222 ~~~~~~~~~l~----~-h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~  262 (767)
                      +..........    . -..-|++|.|-.|+. |+++-+     .||-..+
T Consensus       186 ~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~g  235 (691)
T KOG2048|consen  186 GQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFG  235 (691)
T ss_pred             CceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCc
Confidence            87654111111    1 233578999988876 554333     6665543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.37  E-value=1.8e-11  Score=138.20  Aligned_cols=194  Identities=14%  Similarity=0.168  Sum_probs=132.6

Q ss_pred             EEcCCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCe---------
Q 004217           77 GRDARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS---------  140 (767)
Q Consensus        77 ~sd~g~~LaSgs~DgsIrlWd~~t~~------L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~---------  140 (767)
                      ...+...|++.+.|.+++.||++..+      +.||.+.|.+++|.+ |...|++|+.||.|.|||++-..         
T Consensus       108 wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~  187 (720)
T KOG0321|consen  108 WAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDN  187 (720)
T ss_pred             cCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhh
Confidence            33577889999999999999999863      669999999999999 66788999999999999984321         


Q ss_pred             ------------------EEEEEccCCCCcEE---EEEccCCCcEEEEEeC-CCeEEEEECCCCeEEEeec---------
Q 004217          141 ------------------CLKVLHGHRRTPWV---VRFHPLNPTIIASGSL-DHEVRLWNASTAECIGSRD---------  189 (767)
Q Consensus       141 ------------------~l~~L~gH~~~V~s---LafsP~dg~lLaSgS~-DGtVrIWDl~tg~~i~~l~---------  189 (767)
                                        .++.-+.+...|.+   +-+.. |...|++++. |+.|++||+++.......+         
T Consensus       188 ~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t  266 (720)
T KOG0321|consen  188 RIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPT  266 (720)
T ss_pred             hhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccC
Confidence                              11122234444544   44555 7889999887 9999999999866543321         


Q ss_pred             C---CCCeEEEEEcCCCCEE-EEEECCcEEEEEcCCCccccCCeEEecCCC--CeEEEEEccCCCeEEEEEe-----eCC
Q 004217          190 F---YRPIASIAFHASGELL-AVASGHKLYIWRYNMREETSSPRIVLRTRR--SLRAVHFHPHAAPLLLTAE-----VND  258 (767)
Q Consensus       190 h---~~~VtsVafSPdG~~L-AsgSdd~V~VWDl~t~~~~~~~~~l~~h~~--~VtsVaFSPDG~~LlaSgs-----vwd  258 (767)
                      +   ...+.++..+..|.+| |.+.|+.|++||+....... ...+.++..  --..-..+||+.+++.+..     +|.
T Consensus       267 ~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP-~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~  345 (720)
T KOG0321|consen  267 HSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISP-VAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWV  345 (720)
T ss_pred             cccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCc-hhhccCcccceeeeeeecCCCCceEeccCCCcceeeee
Confidence            2   2246677777778765 45557779999998765422 223333321  1223457899998877665     777


Q ss_pred             cCCCCcceeEeecCCC
Q 004217          259 LDSSESSLTLATSPGY  274 (767)
Q Consensus       259 l~s~~~~~~l~t~sG~  274 (767)
                      +...+.  ......||
T Consensus       346 vs~~e~--~~~~l~Gh  359 (720)
T KOG0321|consen  346 VSSPEA--PPALLLGH  359 (720)
T ss_pred             ecCccC--ChhhhhCc
Confidence            775332  33334454

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=4.2e-12  Score=141.70  Aligned_cols=196  Identities=14%  Similarity=0.145  Sum_probs=151.4

Q ss_pred             eeecccccceecCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC------------CCCCCCCCeEEEEECCCCCeEE
Q 004217           56 KRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC------------PLSPPPRSTIAAAFSPDGKTLA  123 (767)
Q Consensus        56 k~~wd~~~~~~~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------------~L~gH~~sVtsVaFSpDG~~LA  123 (767)
                      ++.|.-...-..........++......|+++++|++|++|+++..            ++.+|.++|.|+++++++.+++
T Consensus       281 ~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y  360 (577)
T KOG0642|consen  281 TKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY  360 (577)
T ss_pred             heecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE
Confidence            4445554322222223455566667788999999999999999321            3679999999999999999999


Q ss_pred             EEeCCCeEEEEECCCC----------eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEE--------
Q 004217          124 STHGDHTVKIIDCQTG----------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI--------  185 (767)
Q Consensus       124 Sgs~DGtVrVWDl~tg----------~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i--------  185 (767)
                      +|+.||+|+.|++...          .....|.||++.|+.+++|+ ..+.|++++.||+|++|+.......        
T Consensus       361 sgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~  439 (577)
T KOG0642|consen  361 SGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEH  439 (577)
T ss_pred             eeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCcccc
Confidence            9999999999965321          23467889999999999999 7888999999999999987654330        


Q ss_pred             ------------------------------------Eeec--------CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcC
Q 004217          186 ------------------------------------GSRD--------FYRPIASIAFHASGELLAVASGHK-LYIWRYN  220 (767)
Q Consensus       186 ------------------------------------~~l~--------h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~  220 (767)
                                                          ..++        ....+..+.++|.+.+.+++..++ |+++|..
T Consensus       440 g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~  519 (577)
T KOG0642|consen  440 GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK  519 (577)
T ss_pred             CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence                                                0000        012355678889998888888776 9999999


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +++.+.   ....|...++++++.|+|-+|++...
T Consensus       520 ~~~~l~---s~~a~~~svtslai~~ng~~l~s~s~  551 (577)
T KOG0642|consen  520 TGKILH---SMVAHKDSVTSLAIDPNGPYLMSGSH  551 (577)
T ss_pred             ccccch---heeeccceecceeecCCCceEEeecC
Confidence            998765   67789999999999999998887665

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.36  E-value=1.5e-12  Score=149.71  Aligned_cols=185  Identities=16%  Similarity=0.235  Sum_probs=142.3

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      +.|.++...|.++++|+.|..+++|..++.    .+.||.+.|+.++.+.+...+++++.|..|++|.+.++.++..+.|
T Consensus       193 Vyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrg  272 (1113)
T KOG0644|consen  193 VYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRG  272 (1113)
T ss_pred             eeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhc
Confidence            456667778999999999999999998876    5779999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe--------------EEEee--c---------------CCCCeEE
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE--------------CIGSR--D---------------FYRPIAS  196 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~--------------~i~~l--~---------------h~~~Vts  196 (767)
                      |++.|++++|+|     ..+.+.||++++||.+-.-              .+..+  .               .......
T Consensus       273 htgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~  347 (1113)
T KOG0644|consen  273 HTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQ  347 (1113)
T ss_pred             cccceeeeccCc-----cccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhH
Confidence            999999999999     3388899999999988110              00000  0               0011223


Q ss_pred             EEEcCCCCEEEEEE------------CCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCC
Q 004217          197 IAFHASGELLAVAS------------GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VND  258 (767)
Q Consensus       197 VafSPdG~~LAsgS------------dd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwd  258 (767)
                      ++|...+-.+++.+            +..+++|++-++....   .+.+|...++.+.|+|-+..+..+++      +||
T Consensus       348 l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H---~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd  424 (1113)
T KOG0644|consen  348 LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH---NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD  424 (1113)
T ss_pred             hhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhh---hhcccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence            33433333333333            1238899999888766   67789999999999998887776554      777


Q ss_pred             cCCCCc
Q 004217          259 LDSSES  264 (767)
Q Consensus       259 l~s~~~  264 (767)
                      +..+..
T Consensus       425 i~eg~p  430 (1113)
T KOG0644|consen  425 IWEGIP  430 (1113)
T ss_pred             cccCCc
Confidence            775443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.36  E-value=2.6e-12  Score=137.10  Aligned_cols=152  Identities=18%  Similarity=0.235  Sum_probs=113.3

Q ss_pred             CCCCCCCCeEEEEECCCC-CeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC
Q 004217          102 PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS  180 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG-~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~  180 (767)
                      .|.+|.+.|.|++=+|.. ..+++|+.||.|+|||+...+++.+|+.|.+.|..|++..   ..+++++.|++|+.|-+.
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~  137 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKID  137 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeeecc
Confidence            578999999999999966 7899999999999999999999999999999999999965   778999999999999743


Q ss_pred             C---------------------------CeEEEeec------------CCCCeEEEEEcCCCC-EEEEEE-CCcEEEEEc
Q 004217          181 T---------------------------AECIGSRD------------FYRPIASIAFHASGE-LLAVAS-GHKLYIWRY  219 (767)
Q Consensus       181 t---------------------------g~~i~~l~------------h~~~VtsVafSPdG~-~LAsgS-dd~V~VWDl  219 (767)
                      .                           |+.+..+.            ....|.++.|+|... .|+++. ++.|.+||+
T Consensus       138 ~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~  217 (433)
T KOG0268|consen  138 GPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDL  217 (433)
T ss_pred             CCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEec
Confidence            2                           11111111            123467888888776 566664 455999999


Q ss_pred             CCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004217          220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD  260 (767)
Q Consensus       220 ~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~  260 (767)
                      ++...+.+..    ..-.-+.|+|+|.+-.++++.++.++-
T Consensus       218 R~~~Pl~KVi----~~mRTN~IswnPeafnF~~a~ED~nlY  254 (433)
T KOG0268|consen  218 RQASPLKKVI----LTMRTNTICWNPEAFNFVAANEDHNLY  254 (433)
T ss_pred             ccCCccceee----eeccccceecCccccceeeccccccce
Confidence            9998766222    233457899999544344444444333

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=2.1e-11  Score=133.66  Aligned_cols=172  Identities=12%  Similarity=0.116  Sum_probs=142.4

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-------------CCCCCCCCeEEEEECCC--CCeEEEEeCCCeEEEEEC
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-------------PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDC  136 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-------------~L~gH~~sVtsVaFSpD--G~~LASgs~DGtVrVWDl  136 (767)
                      ..++.+++++..++++++||.|.+|++..-             .+..|+-+|+++...+.  ..+|++++.|.++|+||+
T Consensus       126 ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl  205 (476)
T KOG0646|consen  126 ITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDL  205 (476)
T ss_pred             eeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence            788889999999999999999999987431             36789999999998874  458999999999999999


Q ss_pred             CCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe----------------EEEe-ecCCC--CeEEE
Q 004217          137 QTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE----------------CIGS-RDFYR--PIASI  197 (767)
Q Consensus       137 ~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~----------------~i~~-l~h~~--~VtsV  197 (767)
                      ..|..+.++. -...+.++..+| .+..++.|+.+|.|.+.++.+-.                .+.. .+|.+  .|+|+
T Consensus       206 S~g~LLlti~-fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL  283 (476)
T KOG0646|consen  206 SLGVLLLTIT-FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL  283 (476)
T ss_pred             ccceeeEEEe-cCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE
Confidence            9999887775 457799999999 88999999999999998875422                1111 24555  99999


Q ss_pred             EEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCC
Q 004217          198 AFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA  248 (767)
Q Consensus       198 afSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~  248 (767)
                      +.+-||.+|++|+.++ |+|||+...+.++   .+..-.++|+-+.+.|-.+
T Consensus       284 ais~DgtlLlSGd~dg~VcvWdi~S~Q~iR---tl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  284 AISTDGTLLLSGDEDGKVCVWDIYSKQCIR---TLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             EEecCccEEEeeCCCCCEEEEecchHHHHH---HHhhhccccceeEeecccc
Confidence            9999999999999655 9999999988776   3333578899999876544

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.35  E-value=9.8e-12  Score=141.26  Aligned_cols=188  Identities=20%  Similarity=0.327  Sum_probs=142.9

Q ss_pred             ecccccceecCCcceEEEEEEcCCCEEEEEeCCC-----eEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCC
Q 004217           58 LLGETARKCSGSFSQIFEAGRDARRGLASWVEAE-----SLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGD  128 (767)
Q Consensus        58 ~wd~~~~~~~~s~s~~~vA~sd~g~~LaSgs~Dg-----sIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~D  128 (767)
                      +|.+.-.-+...+...+++.++.+..+++.+...     .|++|+..+.    .|.+|.-.|+.++|||||++|++.+.|
T Consensus       514 LwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD  593 (764)
T KOG1063|consen  514 LWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD  593 (764)
T ss_pred             cchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence            4544433344445577888889999999987654     3899998764    488999999999999999999999999


Q ss_pred             CeEEEEECCCCe----EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC--eEEEe---ecCCCCeEEEEE
Q 004217          129 HTVKIIDCQTGS----CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA--ECIGS---RDFYRPIASIAF  199 (767)
Q Consensus       129 GtVrVWDl~tg~----~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg--~~i~~---l~h~~~VtsVaf  199 (767)
                      .++.+|......    ....++.|+.-|+++.|+| ++.+|+|+|.|++|++|.....  +.+..   +.+...|+.++|
T Consensus       594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~  672 (764)
T KOG1063|consen  594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAY  672 (764)
T ss_pred             ceEEeeeeecccchhhhhccccccceEEEEcccCc-ccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEe
Confidence            999999985432    1234688999999999999 8999999999999999998877  44433   568899999999


Q ss_pred             cCC-----CCEEEEEECCc-EEEEEcCCCcccc---------CCeEEecCCCCeEEEEEccC
Q 004217          200 HAS-----GELLAVASGHK-LYIWRYNMREETS---------SPRIVLRTRRSLRAVHFHPH  246 (767)
Q Consensus       200 SPd-----G~~LAsgSdd~-V~VWDl~t~~~~~---------~~~~l~~h~~~VtsVaFSPD  246 (767)
                      .|-     +..+++|-..+ |.+|......+..         .......|...|+.+.|.|.
T Consensus       673 ~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~  734 (764)
T KOG1063|consen  673 LPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT  734 (764)
T ss_pred             eccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccc
Confidence            873     23667777654 9999865211110         01122346778999999986

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=8.3e-11  Score=119.13  Aligned_cols=173  Identities=19%  Similarity=0.214  Sum_probs=138.7

Q ss_pred             CCCEEEEE-eCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc--C----
Q 004217           80 ARRGLASW-VEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG--H----  148 (767)
Q Consensus        80 ~g~~LaSg-s~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g--H----  148 (767)
                      ++..|+++ ..|.+|.+-|...+    .+.+|++-|.++ ++-+|-.+++|+.|.+|++||++-..++.++..  |    
T Consensus       151 ~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gl  229 (350)
T KOG0641|consen  151 GGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGL  229 (350)
T ss_pred             CceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCc
Confidence            34556654 35667777777666    378999999886 233588999999999999999998888877632  2    


Q ss_pred             -CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECC-cEEEEEcCCCccc
Q 004217          149 -RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREET  225 (767)
Q Consensus       149 -~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd-~V~VWDl~t~~~~  225 (767)
                       ...|.+++..| .+++|++|-.|....+||++.++.++.+ .|...|.++.|+|...|+.+++.| +|++-|+...-..
T Consensus       230 essavaav~vdp-sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~  308 (350)
T KOG0641|consen  230 ESSAVAAVAVDP-SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH  308 (350)
T ss_pred             ccceeEEEEECC-CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh
Confidence             25689999999 9999999999999999999999999885 589999999999999999999955 4999998643211


Q ss_pred             -cCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          226 -SSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       226 -~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                       .+......|++.+..+.|+|..-.++.++
T Consensus       309 el~~~vv~ehkdk~i~~rwh~~d~sfisss  338 (350)
T KOG0641|consen  309 ELPIMVVAEHKDKAIQCRWHPQDFSFISSS  338 (350)
T ss_pred             cCceEEEEeccCceEEEEecCccceeeecc
Confidence             12445677999999999999886666554

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.33  E-value=1.7e-11  Score=136.24  Aligned_cols=172  Identities=14%  Similarity=0.218  Sum_probs=132.3

Q ss_pred             EcCCCEEEEEeCCCeEEEEeCCCCC--------CCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCC----------
Q 004217           78 RDARRGLASWVEAESLHHLRPKYCP--------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT----------  138 (767)
Q Consensus        78 sd~g~~LaSgs~DgsIrlWd~~t~~--------L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~t----------  138 (767)
                      ...+..|..+-.-|.|.+.|....+        ..-.+..|+|+.|-| +..+++.+..+|.+.+||.+-          
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~  261 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ  261 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence            3566777778888888888876532        112347899999999 556777788899999997621          


Q ss_pred             ----Ce--------------EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEE
Q 004217          139 ----GS--------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAF  199 (767)
Q Consensus       139 ----g~--------------~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVaf  199 (767)
                          +.              ++..+.--.+.|..++|+| |+++|++.+.||.+||||..+.+.+..++ .-+...|++|
T Consensus       262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW  340 (636)
T KOG2394|consen  262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW  340 (636)
T ss_pred             ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence                11              1111222245788899999 99999999999999999999888776654 3467899999


Q ss_pred             cCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 004217          200 HASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN  257 (767)
Q Consensus       200 SPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvw  257 (767)
                      +|||+||++|+.|. |.||.+...+.+.   .-.+|+++|..|+|.|    ..++.+.|
T Consensus       341 SPDGKyIvtGGEDDLVtVwSf~erRVVA---RGqGHkSWVs~VaFDp----ytt~~ee~  392 (636)
T KOG2394|consen  341 SPDGKYIVTGGEDDLVTVWSFEERRVVA---RGQGHKSWVSVVAFDP----YTTSTEEW  392 (636)
T ss_pred             cCCccEEEecCCcceEEEEEeccceEEE---eccccccceeeEeecc----cccccccc
Confidence            99999999999766 9999999888765   6678999999999998    23444555

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.33  E-value=2.7e-10  Score=119.12  Aligned_cols=170  Identities=29%  Similarity=0.389  Sum_probs=137.1

Q ss_pred             cCCC-EEEEEeC-CCeEEEEeCCC-C----CCCCCCCCeEEEEECCCCCeEEEEeC-CCeEEEEECCCCeEEEEEccCCC
Q 004217           79 DARR-GLASWVE-AESLHHLRPKY-C----PLSPPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHGHRR  150 (767)
Q Consensus        79 d~g~-~LaSgs~-DgsIrlWd~~t-~----~L~gH~~sVtsVaFSpDG~~LASgs~-DGtVrVWDl~tg~~l~~L~gH~~  150 (767)
                      .++. .+...+. |+.+++|+... .    .+..|...|.+++|+++++.+++++. |+.+++|++.+++.+..+.+|..
T Consensus       120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (466)
T COG2319         120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD  199 (466)
T ss_pred             CCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCC
Confidence            3444 4444344 89999999986 2    57799999999999999999999886 99999999999888999999999


Q ss_pred             CcEEEEEccCCCc-EEEEEeCCCeEEEEECCCCeEEE-ee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCcccc
Q 004217          151 TPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAECIG-SR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETS  226 (767)
Q Consensus       151 ~V~sLafsP~dg~-lLaSgS~DGtVrIWDl~tg~~i~-~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~  226 (767)
                      .|.+++|+| ++. .+++++.|+.|++||...+..+. .+ .|...+ ...|++++.++++++.+. +++||++..... 
T Consensus       200 ~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-  276 (466)
T COG2319         200 PVSSLAFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL-  276 (466)
T ss_pred             ceEEEEEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcE-
Confidence            999999998 666 66666999999999999887777 33 355554 338999998888777655 999999877651 


Q ss_pred             CCeEEecCCCCeEEEEEccCCCeEEE
Q 004217          227 SPRIVLRTRRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       227 ~~~~l~~h~~~VtsVaFSPDG~~Lla  252 (767)
                       ......|...|.++.|+|++..+++
T Consensus       277 -~~~~~~~~~~v~~~~~~~~~~~~~~  301 (466)
T COG2319         277 -LRTLSGHSSSVLSVAFSPDGKLLAS  301 (466)
T ss_pred             -EEEEecCCccEEEEEECCCCCEEEE
Confidence             1223678899999999998887776

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.32  E-value=2e-11  Score=127.52  Aligned_cols=170  Identities=18%  Similarity=0.200  Sum_probs=136.1

Q ss_pred             CCeEEEEeCCCC-------------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCe---EEEEEccCCCCc
Q 004217           90 AESLHHLRPKYC-------------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHRRTP  152 (767)
Q Consensus        90 DgsIrlWd~~t~-------------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~---~l~~L~gH~~~V  152 (767)
                      +..+|+|.+...             +-..+..++++.+|+. |.++|.+.+-|-+..|||++++.   ....|-.|...|
T Consensus       120 ~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV  199 (364)
T KOG0290|consen  120 SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEV  199 (364)
T ss_pred             cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcce
Confidence            456899988631             2335677899999998 88999999999999999999873   356678899999


Q ss_pred             EEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-c--C-CCCeEEEEEcCCC-CEEEEEECC--cEEEEEcCCCccc
Q 004217          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-D--F-YRPIASIAFHASG-ELLAVASGH--KLYIWRYNMREET  225 (767)
Q Consensus       153 ~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~--h-~~~VtsVafSPdG-~~LAsgSdd--~V~VWDl~t~~~~  225 (767)
                      ..|+|.....+.|+|.+.||.||+||++..+....+ +  . ..+...++|+++. +++|+-..|  +|.|.|++.... 
T Consensus       200 ~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t-  278 (364)
T KOG0290|consen  200 YDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT-  278 (364)
T ss_pred             eEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc-
Confidence            999999866789999999999999999986654442 2  2 4567889998866 577766644  399999998765 


Q ss_pred             cCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCC
Q 004217          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDS  261 (767)
Q Consensus       226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s  261 (767)
                       +...+.+|...|+.|+|.|....-+.+++      +||+..
T Consensus       279 -pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  279 -PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             -ceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence             34578899999999999998876666655      888874

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=3.6e-10  Score=128.10  Aligned_cols=158  Identities=14%  Similarity=0.133  Sum_probs=112.9

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeC---CCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEE
Q 004217           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (767)
Q Consensus        92 sIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~---DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lL  165 (767)
                      .|.+||.+..   .+..+...+...+|||||+.|+..+.   +..|.+||+.+++... +....+.+..+.|+| |++.|
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SP-DG~~L  257 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSP-DGSKL  257 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECC-CCCEE
Confidence            6888887654   35567778999999999999987643   4579999998886432 222333455689999 77766


Q ss_pred             EE-EeCCC--eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC--c--EEEEEcCCCccccCCeEEecCCCCe
Q 004217          166 AS-GSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH--K--LYIWRYNMREETSSPRIVLRTRRSL  238 (767)
Q Consensus       166 aS-gS~DG--tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd--~--V~VWDl~t~~~~~~~~~l~~h~~~V  238 (767)
                      +. .+.++  .|.+||+.+++..........+....|+|||+.|+..++.  .  |+++|+.+++..    .+..+....
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~----~lt~~~~~~  333 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ----RITWEGSQN  333 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE----EeecCCCCc
Confidence            54 34455  5889999988877666555677889999999988887753  2  666677665432    233344456


Q ss_pred             EEEEEccCCCeEEEEEe
Q 004217          239 RAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       239 tsVaFSPDG~~LlaSgs  255 (767)
                      ....|+|||++|+.++.
T Consensus       334 ~~~~~SpDG~~Ia~~~~  350 (429)
T PRK03629        334 QDADVSSDGKFMVMVSS  350 (429)
T ss_pred             cCEEECCCCCEEEEEEc
Confidence            78999999998887664

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=2.9e-11  Score=128.53  Aligned_cols=182  Identities=17%  Similarity=0.235  Sum_probs=139.6

Q ss_pred             CEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC--CCCeEEEEeCCCeEEEEECCCCeEE--EEEccCC-CCc
Q 004217           82 RGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCL--KVLHGHR-RTP  152 (767)
Q Consensus        82 ~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSp--DG~~LASgs~DGtVrVWDl~tg~~l--~~L~gH~-~~V  152 (767)
                      ..++.+...++|++||..++    ++++|+..++.++|..  .+..+.+|+.||+||+||+++....  ..+..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            45777888999999999885    5789999999999988  5678999999999999999886544  3445565 345


Q ss_pred             EEEEEccCCCcEEEEEeC----CCeEEEEECCCCeE-EEee--cCCCCeEEEEEcCCC-CEEEEEECCc-EEEEEcCCCc
Q 004217          153 WVVRFHPLNPTIIASGSL----DHEVRLWNASTAEC-IGSR--DFYRPIASIAFHASG-ELLAVASGHK-LYIWRYNMRE  223 (767)
Q Consensus       153 ~sLafsP~dg~lLaSgS~----DGtVrIWDl~tg~~-i~~l--~h~~~VtsVafSPdG-~~LAsgSdd~-V~VWDl~t~~  223 (767)
                      .+++-+- +.+++++|..    |-.|.+||++..+. ++.+  .|...|+++.|+|.. ++|++|+-|+ |.|||++...
T Consensus       121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            5666655 6678888753    67899999998776 5554  389999999999977 5899999777 9999998775


Q ss_pred             cccCCeEEecCCCCeEEEEEccCC--CeEEEEE----eeCCcCCCCc
Q 004217          224 ETSSPRIVLRTRRSLRAVHFHPHA--APLLLTA----EVNDLDSSES  264 (767)
Q Consensus       224 ~~~~~~~l~~h~~~VtsVaFSPDG--~~LlaSg----svwdl~s~~~  264 (767)
                      +.........|...|..+.|+.++  +.+..+-    .+|++..++.
T Consensus       200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence            544334566788899999999998  5333221    2777765553

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=3.4e-11  Score=131.87  Aligned_cols=182  Identities=19%  Similarity=0.174  Sum_probs=144.0

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~---gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH  148 (767)
                      ...+.++.++.+|+..+..|-|.+.-..++++.   .-.+.|.+++|+.|++.|++++.+|.|.+||++...+++.+...
T Consensus       306 ~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~  385 (514)
T KOG2055|consen  306 MERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD  385 (514)
T ss_pred             hheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec
Confidence            556778888899999999999999999888654   34678999999999999999999999999999999999998643


Q ss_pred             CCCc--EEEEEccCCCcEEEEEeCCCeEEEEECCC------CeEEEee-cCCCCeEEEEEcCCCCEEEEEEC---CcEEE
Q 004217          149 RRTP--WVVRFHPLNPTIIASGSLDHEVRLWNAST------AECIGSR-DFYRPIASIAFHASGELLAVASG---HKLYI  216 (767)
Q Consensus       149 ~~~V--~sLafsP~dg~lLaSgS~DGtVrIWDl~t------g~~i~~l-~h~~~VtsVafSPdG~~LAsgSd---d~V~V  216 (767)
                       +.|  ++++.++ ++.+|++|+..|.|.|||..+      .++++.+ .....|+++.|++++++||.+|.   +.+++
T Consensus       386 -G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrL  463 (514)
T KOG2055|consen  386 -GSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRL  463 (514)
T ss_pred             -CccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEE
Confidence             333  4566678 889999999999999999764      3444443 35678999999999999999984   44998


Q ss_pred             EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       217 WDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      -.+.........-.....-+.|+|++|||.|.+|+.+-.
T Consensus       464 VHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe  502 (514)
T KOG2055|consen  464 VHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE  502 (514)
T ss_pred             EeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence            888766543211112233457999999999998877654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=2.2e-10  Score=129.74  Aligned_cols=157  Identities=14%  Similarity=0.171  Sum_probs=114.0

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCC---CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEE
Q 004217           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (767)
Q Consensus        92 sIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~D---GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lL  165 (767)
                      .|.+||....   ++..+...+...+|+|||+.|+..+.+   ..|++||+.+++.. .+....+....+.|+| +++.+
T Consensus       185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~Sp-DG~~l  262 (433)
T PRK04922        185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSP-DGRRL  262 (433)
T ss_pred             EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECC-CCCEE
Confidence            5888887654   366778889999999999999988743   47999999888753 3344445556789999 66654


Q ss_pred             -EEEeCCC--eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC--c--EEEEEcCCCccccCCeEEecCCCCe
Q 004217          166 -ASGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH--K--LYIWRYNMREETSSPRIVLRTRRSL  238 (767)
Q Consensus       166 -aSgS~DG--tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd--~--V~VWDl~t~~~~~~~~~l~~h~~~V  238 (767)
                       ++.+.++  .|.+||+.+++......+.......+|+|||++|+..++.  .  |+++|+.+++...    +..+....
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~----lt~~g~~~  338 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER----LTFQGNYN  338 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----eecCCCCc
Confidence             5556665  5999999988866555555555678999999999888742  2  7777776655322    22233445


Q ss_pred             EEEEEccCCCeEEEEE
Q 004217          239 RAVHFHPHAAPLLLTA  254 (767)
Q Consensus       239 tsVaFSPDG~~LlaSg  254 (767)
                      ..++|+|||++|+.+.
T Consensus       339 ~~~~~SpDG~~Ia~~~  354 (433)
T PRK04922        339 ARASVSPDGKKIAMVH  354 (433)
T ss_pred             cCEEECCCCCEEEEEE
Confidence            5789999999888764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=6e-11  Score=131.91  Aligned_cols=154  Identities=18%  Similarity=0.204  Sum_probs=120.0

Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE-ccCCCCcEEEEEccC-CCcEEEEEeCCCeEEEEEC
Q 004217          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPL-NPTIIASGSLDHEVRLWNA  179 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L-~gH~~~V~sLafsP~-dg~lLaSgS~DGtVrIWDl  179 (767)
                      +|.||++.|+|++|+.||.+|++|++|-.+.|||.-..+.++.+ .||.+.|.++.|-|. +.++++||..|..|+++|+
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl  124 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL  124 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence            68999999999999999999999999999999999888888776 689999999999984 4568899999999999999


Q ss_pred             CCCeE----------EEee-cCCCCeEEEEEcCCC-CEEEEEECCc-EEEEEcCCCccccCC-------eEEecCCCCeE
Q 004217          180 STAEC----------IGSR-DFYRPIASIAFHASG-ELLAVASGHK-LYIWRYNMREETSSP-------RIVLRTRRSLR  239 (767)
Q Consensus       180 ~tg~~----------i~~l-~h~~~VtsVafSPdG-~~LAsgSdd~-V~VWDl~t~~~~~~~-------~~l~~h~~~Vt  239 (767)
                      ...+.          ...+ .|...|..++-.|++ ..+.+++.|+ |+-+|++........       ..+....-...
T Consensus       125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk  204 (758)
T KOG1310|consen  125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELK  204 (758)
T ss_pred             ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheee
Confidence            85221          1111 377788889999999 5777888666 999999975432100       01111123467


Q ss_pred             EEEEccCCCeEEEEEe
Q 004217          240 AVHFHPHAAPLLLTAE  255 (767)
Q Consensus       240 sVaFSPDG~~LlaSgs  255 (767)
                      ++..+|...++++.|.
T Consensus       205 ~ltisp~rp~~laVGg  220 (758)
T KOG1310|consen  205 CLTISPSRPYYLAVGG  220 (758)
T ss_pred             eeeecCCCCceEEecC
Confidence            8999998887776655

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=2.4e-11  Score=128.02  Aligned_cols=145  Identities=16%  Similarity=0.173  Sum_probs=113.9

Q ss_pred             eEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec
Q 004217          110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD  189 (767)
Q Consensus       110 VtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~  189 (767)
                      ..|+.||+.|.+||+|+.||.|.|||+.|...-+.|.+|..+|.+++|++ ++++|+++|.|..|++||+..|.+++.+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            78999999999999999999999999999888888999999999999999 99999999999999999999999999999


Q ss_pred             CCCCeEEEEEcCCCC--EEEEEECCcEEEEEcCCCccccCCeEEecC-CCCeEEEEEccCCCeEEEEEe
Q 004217          190 FYRPIASIAFHASGE--LLAVASGHKLYIWRYNMREETSSPRIVLRT-RRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       190 h~~~VtsVafSPdG~--~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h-~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +..+|+.+.|+|..+  .+++--+..-.+-++...+....+..-.+. ...-.+..|.+.|++++++.+
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts  173 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS  173 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC
Confidence            999999999999765  344433444455555443321101100011 112233469999998888654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.28  E-value=8.4e-11  Score=124.31  Aligned_cols=179  Identities=16%  Similarity=0.171  Sum_probs=139.8

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCC-CC------CC-----CCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCC
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPK-YC------PL-----SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT  138 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~-t~------~L-----~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~t  138 (767)
                      +.++.++.+|..|+.|- ...|+++|.. .+      ..     .+..+-|.+++|+| +.+.++.|+...++-||.-..
T Consensus       161 AhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~  239 (406)
T KOG2919|consen  161 AHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG  239 (406)
T ss_pred             heeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence            66778899999999884 6689999983 22      11     23467799999999 777999999999999999999


Q ss_pred             CeEEEEEccCCCCcEEEEEccCCCcEEEEEeC-CCeEEEEECCCC-eEEEeec-CCC-CeEE--EEEcCCCCEEEEEECC
Q 004217          139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWNASTA-ECIGSRD-FYR-PIAS--IAFHASGELLAVASGH  212 (767)
Q Consensus       139 g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~-DGtVrIWDl~tg-~~i~~l~-h~~-~Vts--VafSPdG~~LAsgSdd  212 (767)
                      +.++..+.+|.+.|+.++|++ +++.|++|.. |-.|..||++.. .++..+. |.. ....  ....|+|++|++|+.+
T Consensus       240 ~~pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~td  318 (406)
T KOG2919|consen  240 RRPLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTD  318 (406)
T ss_pred             CCceeeecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCC
Confidence            999999999999999999999 8888888775 788999999964 3444433 222 2223  4557899999999755


Q ss_pred             c-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          213 K-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       213 ~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      + |++||+++...  ....+..+...|+.|+++|--. |+++++
T Consensus       319 G~V~vwdlk~~gn--~~sv~~~~sd~vNgvslnP~mp-ilatss  359 (406)
T KOG2919|consen  319 GSVRVWDLKDLGN--EVSVTGNYSDTVNGVSLNPIMP-ILATSS  359 (406)
T ss_pred             ccEEEEecCCCCC--cccccccccccccceecCcccc-eeeecc
Confidence            5 99999988332  2336677899999999999955 555443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.27  E-value=1.2e-10  Score=121.72  Aligned_cols=182  Identities=15%  Similarity=0.146  Sum_probs=142.8

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCC----------CCCCCCeEEEEECC--CCCeEEEEeCCCeEEEEECCCC
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPL----------SPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTG  139 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L----------~gH~~sVtsVaFSp--DG~~LASgs~DGtVrVWDl~tg  139 (767)
                      ..++.+..++..+++-. |..|.+|++....-          .+|....++-+|||  ||+.+++.+ |++++.||+++.
T Consensus       126 i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~  203 (370)
T KOG1007|consen  126 INCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTM  203 (370)
T ss_pred             eeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccch
Confidence            56777888899998876 88899999987521          24677789999999  898888765 689999999998


Q ss_pred             eEEEEE-ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC-eEEEee-cCCCCeEEEEEcCCCC-EEEEEECCc-E
Q 004217          140 SCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSR-DFYRPIASIAFHASGE-LLAVASGHK-L  214 (767)
Q Consensus       140 ~~l~~L-~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg-~~i~~l-~h~~~VtsVafSPdG~-~LAsgSdd~-V  214 (767)
                      ++...+ ..|...|..+.|+|....+|++|+.||.|+|||.+.. .++.++ +|...|.++.|+|... +|.+|+.|. |
T Consensus       204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V  283 (370)
T KOG1007|consen  204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAV  283 (370)
T ss_pred             hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCcee
Confidence            766555 5788899999999977779999999999999999964 455554 5889999999999764 666776555 8


Q ss_pred             EEEEcCCCc---c------------------cc-----CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          215 YIWRYNMRE---E------------------TS-----SPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       215 ~VWDl~t~~---~------------------~~-----~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .+|....-.   .                  ..     ....+..|.+.|++++||.-..+++++-+
T Consensus       284 ~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS  350 (370)
T KOG1007|consen  284 NLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS  350 (370)
T ss_pred             EEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence            888754221   0                  00     12245678999999999999998888764

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.27  E-value=3.5e-10  Score=119.65  Aligned_cols=221  Identities=15%  Similarity=0.177  Sum_probs=161.9

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEEC-CCCe--E
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC-QTGS--C  141 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl-~tg~--~  141 (767)
                      ..+.+...++..++.+.+...|.+|.....       +++.|...|++|+|+|..+.|++|+.|..-+||.. ..++  +
T Consensus        13 itchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkp   92 (361)
T KOG1523|consen   13 ITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKP   92 (361)
T ss_pred             eeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeecc
Confidence            566788889999999999999999988754       47789999999999999999999999999999998 4443  4


Q ss_pred             EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-----ecCCCCeEEEEEcCCCCEEEEEECC-cEE
Q 004217          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVASGH-KLY  215 (767)
Q Consensus       142 l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-----l~h~~~VtsVafSPdG~~LAsgSdd-~V~  215 (767)
                      .-.|..+.+.++++.|+| .++.|++|+....|.+|-++..+--..     ..+.+.|++++|+|++-+|++|+.| +++
T Consensus        93 tlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~r  171 (361)
T KOG1523|consen   93 TLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCR  171 (361)
T ss_pred             ceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCccee
Confidence            445667899999999999 999999999999999998876544322     3467889999999999999999954 477


Q ss_pred             EEEcC-----CCcccc----------CCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCC
Q 004217          216 IWRYN-----MREETS----------SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPP  280 (767)
Q Consensus       216 VWDl~-----t~~~~~----------~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~  280 (767)
                      ||..-     ......          .........+.|..+.|+|+|..|+..+-                       +.
T Consensus       172 VfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H-----------------------ds  228 (361)
T KOG1523|consen  172 VFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH-----------------------DS  228 (361)
T ss_pred             EEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-----------------------CC
Confidence            77532     211000          00112234678999999999998775442                       12


Q ss_pred             eEEEecCCCCC--CCceeeccCCCCCCceeeEEecCCCEEEE
Q 004217          281 VICMAGAHSSS--HPGLAEEVPLITPPFLRPSFVRDDERISL  320 (767)
Q Consensus       281 ~v~l~~~~Ssd--~~~L~sg~~~~slpil~psFSpDg~rIva  320 (767)
                      .+.+.+...+.  ...+...    .+|.+...|-.+...+.+
T Consensus       229 ~v~~~da~~p~~~v~~~~~~----~lP~ls~~~ise~~vv~a  266 (361)
T KOG1523|consen  229 TVSFVDAAGPSERVQSVATA----QLPLLSVSWISENSVVAA  266 (361)
T ss_pred             ceEEeecCCCchhccchhhc----cCCceeeEeecCCceeec
Confidence            34444433332  1122222    377777777777766665

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=2.7e-10  Score=129.60  Aligned_cols=178  Identities=13%  Similarity=0.112  Sum_probs=143.1

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE--EEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVL  145 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l--~~L  145 (767)
                      ...+++. ++.+|++.+-+|+|.-||+.+.+    +..-.+.|++++.+|.+..++.|+.||.++.++...++..  ..|
T Consensus        72 IE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l  150 (691)
T KOG2048|consen   72 IESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSL  150 (691)
T ss_pred             eeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeec
Confidence            3334443 78889999999999999998863    4566788999999999999999999998888888877654  344


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-----c----CCCCeEEEEEcCCCCEEEEEE-CCcEE
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-----D----FYRPIASIAFHASGELLAVAS-GHKLY  215 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-----~----h~~~VtsVafSPdG~~LAsgS-dd~V~  215 (767)
                      ...++.|.+++|+| ++..+++|+.||.|++||..++..+...     +    ...-|+++.|-.++. |++|. .|.|.
T Consensus       151 ~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~  228 (691)
T KOG2048|consen  151 MRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVT  228 (691)
T ss_pred             ccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEE
Confidence            55678999999999 8888999999999999999998877632     1    122467788776664 45554 56699


Q ss_pred             EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       216 VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +||...+..++   ....|...|.+++..+++.+++.+|-
T Consensus       229 FWd~~~gTLiq---S~~~h~adVl~Lav~~~~d~vfsaGv  265 (691)
T KOG2048|consen  229 FWDSIFGTLIQ---SHSCHDADVLALAVADNEDRVFSAGV  265 (691)
T ss_pred             EEcccCcchhh---hhhhhhcceeEEEEcCCCCeEEEccC
Confidence            99999998766   56778999999999999998877764

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.25  E-value=6.2e-11  Score=129.78  Aligned_cols=194  Identities=16%  Similarity=0.154  Sum_probs=143.3

Q ss_pred             CCCCCCCeEEEEECCC--CCeEEEEeCCCeEEEEECCCC----eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEE
Q 004217          103 LSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTG----SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (767)
Q Consensus       103 L~gH~~sVtsVaFSpD--G~~LASgs~DGtVrVWDl~tg----~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrI  176 (767)
                      ..-+.+.|++++|+|.  -+++|+|..-|.|-+||+.+.    .-+..+..|..+|.++.|+|.+...+++.|.||+|++
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence            4468899999999993  368899999999999999532    2356778899999999999999999999999999999


Q ss_pred             EECCCCeEEEe--ec-CCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217          177 WNASTAECIGS--RD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       177 WDl~tg~~i~~--l~-h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla  252 (767)
                      -|+++......  .. ....+.++.|+.+...++.+.+ |...+||+++.+...  ..+.-|...|++|+++|...++++
T Consensus       262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~--~~~~lh~kKI~sv~~NP~~p~~la  339 (498)
T KOG4328|consen  262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY--ENLRLHKKKITSVALNPVCPWFLA  339 (498)
T ss_pred             eeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc--hhhhhhhcccceeecCCCCchhee
Confidence            99987543322  22 3345677888888777777764 559999999887522  345567889999999999999998


Q ss_pred             EEe------eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCC
Q 004217          253 TAE------VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEH  325 (767)
Q Consensus       253 Sgs------vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~  325 (767)
                      |++      +||++....+..            |.+.               .-....++-...|||+|..|+.-..+.
T Consensus       340 T~s~D~T~kIWD~R~l~~K~s------------p~ls---------------t~~HrrsV~sAyFSPs~gtl~TT~~D~  391 (498)
T KOG4328|consen  340 TASLDQTAKIWDLRQLRGKAS------------PFLS---------------TLPHRRSVNSAYFSPSGGTLLTTCQDN  391 (498)
T ss_pred             ecccCcceeeeehhhhcCCCC------------ccee---------------cccccceeeeeEEcCCCCceEeeccCC
Confidence            887      788875333221            1111               011233444688999998877644433

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=9.6e-11  Score=125.93  Aligned_cols=161  Identities=18%  Similarity=0.200  Sum_probs=132.9

Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC------CeEEEEEc-cCCCCcEEEEEccCCCcEEEEEeCCCeE
Q 004217          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT------GSCLKVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEV  174 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t------g~~l~~L~-gH~~~V~sLafsP~dg~lLaSgS~DGtV  174 (767)
                      .+.+|.+.|+++.||.++++|++|+.|..++||+++.      .+++.... .|...|.+++|.. ...++++|..+++|
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCccee
Confidence            4779999999999999999999999999999999853      35554443 3568899999999 88999999999999


Q ss_pred             EEEECCCCeEEEeecCCC---CeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeE
Q 004217          175 RLWNASTAECIGSRDFYR---PIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (767)
Q Consensus       175 rIWDl~tg~~i~~l~h~~---~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~L  250 (767)
                      .+.|+.+.+.+..+.+..   .|+.+..+|..+.|++.++++ |.+||.+.......+.....-....+.+.|+|-...|
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence            999999999988877654   899999999999999888776 9999998776333233444456778999999998878


Q ss_pred             EEEEe------eCCcCCCC
Q 004217          251 LLTAE------VNDLDSSE  263 (767)
Q Consensus       251 laSgs------vwdl~s~~  263 (767)
                      +++.+      +||++...
T Consensus       210 i~~~~~~~G~~~~D~R~~~  228 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDRRMQA  228 (609)
T ss_pred             EEeccccCCCCceeecccc
Confidence            77654      88887543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.24  E-value=1.9e-09  Score=112.74  Aligned_cols=179  Identities=26%  Similarity=0.387  Sum_probs=140.3

Q ss_pred             eEEEEEEcCCCEEEEEeC-CCeEEEEeCCCC----CCCCCCCCeEEEEECCCCC-eEEEEeCCCeEEEEECCCCeEEE-E
Q 004217           72 QIFEAGRDARRGLASWVE-AESLHHLRPKYC----PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLK-V  144 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~-DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~-~LASgs~DGtVrVWDl~tg~~l~-~  144 (767)
                      ...+.+..++..++.+.. |+.+++|+....    .+.+|...|.+++|+|++. .+++++.|+.|++||...+..+. .
T Consensus       158 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~  237 (466)
T COG2319         158 VTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST  237 (466)
T ss_pred             EEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeee
Confidence            445677778878888875 999999999863    4667999999999999998 55666999999999999888887 6


Q ss_pred             EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE-EEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCC
Q 004217          145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNM  221 (767)
Q Consensus       145 L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~-i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t  221 (767)
                      +.+|...+ ...|+| ++.++++++.|+.+++||++.... ...+ .|...+.++.|+|++..+++++.++ +.+||..+
T Consensus       238 ~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~  315 (466)
T COG2319         238 LSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET  315 (466)
T ss_pred             cCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCC
Confidence            88898876 448999 668888999999999999997664 4443 6788999999999888888876545 99999887


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       222 ~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      ........ ...|...+..+.|.+++..++.+
T Consensus       316 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  346 (466)
T COG2319         316 GKLLSSLT-LKGHEGPVSSLSFSPDGSLLVSG  346 (466)
T ss_pred             CceEEEee-ecccCCceEEEEECCCCCEEEEe
Confidence            76544111 23677789999994332445444

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.24  E-value=6.7e-10  Score=112.96  Aligned_cols=142  Identities=18%  Similarity=0.260  Sum_probs=99.6

Q ss_pred             EEEEECCCCCeEEEEeC---C-------CeEEEEECCC-CeEEEEEcc-CCCCcEEEEEccCCCcEEEE--EeCCCeEEE
Q 004217          111 IAAAFSPDGKTLASTHG---D-------HTVKIIDCQT-GSCLKVLHG-HRRTPWVVRFHPLNPTIIAS--GSLDHEVRL  176 (767)
Q Consensus       111 tsVaFSpDG~~LASgs~---D-------GtVrVWDl~t-g~~l~~L~g-H~~~V~sLafsP~dg~lLaS--gS~DGtVrI  176 (767)
                      ..+.|+++|++|+.-..   |       +...||.++. +.....+.- ..+.|.+++|+| +++.|+.  |..++.|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence            45788898887755433   1       2345555422 233344432 345699999999 6666544  456789999


Q ss_pred             EECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC----CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217          177 WNASTAECIGSRDFYRPIASIAFHASGELLAVASG----HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       177 WDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd----d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla  252 (767)
                      ||++ ++.+..+. ...++.+.|+|+|++|++++-    +.|.+||+++.+.+.    ...| ..++.++|+|||+++++
T Consensus        88 yd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~----~~~~-~~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   88 YDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS----TFEH-SDATDVEWSPDGRYLAT  160 (194)
T ss_pred             EcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee----cccc-CcEEEEEEcCCCCEEEE
Confidence            9997 66666665 467788999999999999872    339999999776544    2233 45789999999999998


Q ss_pred             EEeeCCcC
Q 004217          253 TAEVNDLD  260 (767)
Q Consensus       253 Sgsvwdl~  260 (767)
                      +...|.++
T Consensus       161 a~t~~r~~  168 (194)
T PF08662_consen  161 ATTSPRLR  168 (194)
T ss_pred             EEecccee
Confidence            87766555

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.24  E-value=3.5e-09  Score=114.99  Aligned_cols=172  Identities=15%  Similarity=0.087  Sum_probs=116.8

Q ss_pred             EeCCCeEEEEeCCC-CCC-----CCCCCCeEEEEECCCCCeEEEEe-CCCeEEEEECC-CCeE--EEEEccCCCCcEEEE
Q 004217           87 WVEAESLHHLRPKY-CPL-----SPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQ-TGSC--LKVLHGHRRTPWVVR  156 (767)
Q Consensus        87 gs~DgsIrlWd~~t-~~L-----~gH~~sVtsVaFSpDG~~LASgs-~DGtVrVWDl~-tg~~--l~~L~gH~~~V~sLa  156 (767)
                      ...++.|.+|++.+ +++     ..+.+....++++||+++|++++ .++.|.+|+++ +++.  +.... ..+....+.
T Consensus         8 ~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~   86 (330)
T PRK11028          8 SPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIS   86 (330)
T ss_pred             cCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEE
Confidence            35688899999853 221     13446688899999999987765 47889999997 3432  22222 334577899


Q ss_pred             EccCCCcEEEEEe-CCCeEEEEECCC-C---eEEEeecCCCCeEEEEEcCCCCEEEEEEC--CcEEEEEcCCCccccC--
Q 004217          157 FHPLNPTIIASGS-LDHEVRLWNAST-A---ECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSS--  227 (767)
Q Consensus       157 fsP~dg~lLaSgS-~DGtVrIWDl~t-g---~~i~~l~h~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~t~~~~~~--  227 (767)
                      |+| +++++++++ .++.|.+||+.+ +   +.+..+........++|+|+|++++++..  +.|.+||+++...+..  
T Consensus        87 ~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~  165 (330)
T PRK11028         87 TDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE  165 (330)
T ss_pred             ECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence            999 777777665 489999999974 2   22333334445678899999998877763  4599999986433221  


Q ss_pred             -CeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcC
Q 004217          228 -PRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLD  260 (767)
Q Consensus       228 -~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~  260 (767)
                       ...........+.+.|+|||++++++..      +|+++
T Consensus       166 ~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        166 PAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             CCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence             0011122345678999999998877654      66765

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=1.1e-09  Score=124.13  Aligned_cols=202  Identities=16%  Similarity=0.131  Sum_probs=126.7

Q ss_pred             CeEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCC---CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcE
Q 004217           91 ESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI  164 (767)
Q Consensus        91 gsIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~D---GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~l  164 (767)
                      ..|.++|....   ++..+...+.+.+|||||+.|+..+.+   ..|.+||+.+++... +....+.+....|+| +++.
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SP-DG~~  253 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSP-DGRT  253 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCCE
Confidence            35666666433   356778889999999999999887653   469999999887543 333445567899999 6665


Q ss_pred             E-EEEeCCCeEEEEE--CCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC--CcEEEEE--cCCCccccCCeEEecCCCC
Q 004217          165 I-ASGSLDHEVRLWN--ASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWR--YNMREETSSPRIVLRTRRS  237 (767)
Q Consensus       165 L-aSgS~DGtVrIWD--l~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd--d~V~VWD--l~t~~~~~~~~~l~~h~~~  237 (767)
                      | ++.+.++...||.  +.++.......+........|+|||++|+..++  +...||.  +.+++..    .+......
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~----~lt~~g~~  329 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ----RVTFTGSY  329 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE----EEecCCCC
Confidence            5 4677788766665  455554333334445667889999998887774  2355554  4444321    22222334


Q ss_pred             eEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCE
Q 004217          238 LRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDER  317 (767)
Q Consensus       238 VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~r  317 (767)
                      .....|+|||++|+.++....    .                ..+++++...+....+..+.     ....|.|+|||+.
T Consensus       330 ~~~~~~SpDG~~Ia~~s~~~g----~----------------~~I~v~d~~~g~~~~lt~~~-----~~~~p~~spdg~~  384 (427)
T PRK02889        330 NTSPRISPDGKLLAYISRVGG----A----------------FKLYVQDLATGQVTALTDTT-----RDESPSFAPNGRY  384 (427)
T ss_pred             cCceEECCCCCEEEEEEccCC----c----------------EEEEEEECCCCCeEEccCCC-----CccCceECCCCCE
Confidence            456899999998887654210    0                12344443333222222110     1135899999999


Q ss_pred             EEEeec
Q 004217          318 ISLQHT  323 (767)
Q Consensus       318 Iva~~~  323 (767)
                      |+....
T Consensus       385 l~~~~~  390 (427)
T PRK02889        385 ILYATQ  390 (427)
T ss_pred             EEEEEe
Confidence            998554

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.23  E-value=1e-09  Score=111.66  Aligned_cols=112  Identities=16%  Similarity=0.365  Sum_probs=91.4

Q ss_pred             CCCCeEEEEECCCCCeEEEEe--CCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeC---CCeEEEEECC
Q 004217          106 PPRSTIAAAFSPDGKTLASTH--GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL---DHEVRLWNAS  180 (767)
Q Consensus       106 H~~sVtsVaFSpDG~~LASgs--~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~---DGtVrIWDl~  180 (767)
                      ..+.|.+++|+|+|+.|+...  .+..|.+||++ ++.+..+.  ...+..+.|+| ++++++.++.   .|.|.+||++
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~  133 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVR  133 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECC
Confidence            345699999999999876653  56799999997 66666664  56778999999 8999998874   4679999999


Q ss_pred             CCeEEEeecCCCCeEEEEEcCCCCEEEEEE-------CCcEEEEEcCCC
Q 004217          181 TAECIGSRDFYRPIASIAFHASGELLAVAS-------GHKLYIWRYNMR  222 (767)
Q Consensus       181 tg~~i~~l~h~~~VtsVafSPdG~~LAsgS-------dd~V~VWDl~t~  222 (767)
                      +.+.+....+.. ++.++|+|+|++|+++.       +++++||++...
T Consensus       134 ~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  134 KKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             CCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            999998887765 68999999999999886       345999998643

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.22  E-value=6e-10  Score=119.75  Aligned_cols=160  Identities=19%  Similarity=0.225  Sum_probs=134.3

Q ss_pred             ccceecCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCC-------CCCCCCeEEEEECCCCCeEEEEe--CCCeEE
Q 004217           62 TARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPL-------SPPPRSTIAAAFSPDGKTLASTH--GDHTVK  132 (767)
Q Consensus        62 ~~~~~~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L-------~gH~~sVtsVaFSpDG~~LASgs--~DGtVr  132 (767)
                      ....|...+...++++.-++++|+..-++. |.++|++..++       ..+...+.++.++.++.+||.=+  ..|.|.
T Consensus        78 ~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~  156 (391)
T KOG2110|consen   78 KTTICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV  156 (391)
T ss_pred             CceEEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence            345666666677777777999999888776 99999988642       25677788888888888998643  368999


Q ss_pred             EEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCe-EEEEECCCCeEEEeecC---CCCeEEEEEcCCCCEEEE
Q 004217          133 IIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE-VRLWNASTAECIGSRDF---YRPIASIAFHASGELLAV  208 (767)
Q Consensus       133 VWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGt-VrIWDl~tg~~i~~l~h---~~~VtsVafSPdG~~LAs  208 (767)
                      |||+.+-+.+..+..|++.+-+++|++ +|.+||++|..|+ ||++.+.+|+.+.++..   ...|.+++|+|++++|++
T Consensus       157 l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~  235 (391)
T KOG2110|consen  157 LFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA  235 (391)
T ss_pred             EEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence            999999999999999999999999999 9999999999997 79999999999988763   346889999999999998


Q ss_pred             EECCc-EEEEEcCCCc
Q 004217          209 ASGHK-LYIWRYNMRE  223 (767)
Q Consensus       209 gSdd~-V~VWDl~t~~  223 (767)
                      .++.. |+||.+.+..
T Consensus       236 sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  236 SSNTETVHIFKLEKVS  251 (391)
T ss_pred             ecCCCeEEEEEecccc
Confidence            88654 9999987654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.22  E-value=1.8e-10  Score=127.83  Aligned_cols=162  Identities=15%  Similarity=0.201  Sum_probs=125.7

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEE
Q 004217           81 RRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF  157 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLaf  157 (767)
                      ...++..+.||++.+.+-...   .+..|.+.|.+-.|+|||.-|++++.||.|++|. ++|-...++......|.|++|
T Consensus        75 ~d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W  153 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW  153 (737)
T ss_pred             cceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence            355777888999988876543   4679999999999999999999999999999998 566555555556678999999


Q ss_pred             ccCCCcEEEEEeCCCeEEEEECCC-CeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCC
Q 004217          158 HPLNPTIIASGSLDHEVRLWNAST-AECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTR  235 (767)
Q Consensus       158 sP~dg~lLaSgS~DGtVrIWDl~t-g~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~  235 (767)
                      .|+..+.+++.+  +.+.|=-+.. .+.++-..|.+-|.++.|++...++++|+.|- .+|||......    .....|.
T Consensus       154 ~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~L----f~S~~~e  227 (737)
T KOG1524|consen  154 APNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANL----FTSAAEE  227 (737)
T ss_pred             CCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccc----ccCChhc
Confidence            994445555433  3344444443 34556667999999999999999999999776 99999765432    3456789


Q ss_pred             CCeEEEEEccCCCe
Q 004217          236 RSLRAVHFHPHAAP  249 (767)
Q Consensus       236 ~~VtsVaFSPDG~~  249 (767)
                      .+|++++|+||..+
T Consensus       228 y~ITSva~npd~~~  241 (737)
T KOG1524|consen  228 YAITSVAFNPEKDY  241 (737)
T ss_pred             cceeeeeeccccce
Confidence            99999999999443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.22  E-value=1.6e-10  Score=122.19  Aligned_cols=147  Identities=17%  Similarity=0.258  Sum_probs=122.0

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe---EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC-CC
Q 004217          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TA  182 (767)
Q Consensus       107 ~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~---~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~-tg  182 (767)
                      ..+|+|.+|++|+..+|.+-....|.||.....+   ..++++.|...|+.|+|+| ..+.|++|+.|..-.+|... .+
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCCC
Confidence            4689999999999999999999999999987654   6788999999999999999 88999999999999999984 44


Q ss_pred             eEEE---eecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccC-CeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          183 ECIG---SRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS-PRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       183 ~~i~---~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~-~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      +-..   .+.++..++++.|+|.++.||+|+..+ |.||-++..+.... ..+...+++.|++++|+|++-.+++++
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs  165 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS  165 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence            4333   256899999999999999999999777 99998887665431 123345688899999999988555544

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.22  E-value=2.6e-09  Score=119.17  Aligned_cols=158  Identities=15%  Similarity=0.150  Sum_probs=114.7

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCC---CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEE
Q 004217           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (767)
Q Consensus        92 sIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~D---GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lL  165 (767)
                      .|.++|....   ++..+...+...+|+|||++|+.+..+   ..|++||+.+++... +..+...+..++|+| +++.|
T Consensus       171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~sp-Dg~~l  248 (417)
T TIGR02800       171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSP-DGSKL  248 (417)
T ss_pred             eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCCEE
Confidence            5777777543   355677789999999999999887654   479999999886443 334556677899999 66655


Q ss_pred             -EEEeCCC--eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC----cEEEEEcCCCccccCCeEEecCCCCe
Q 004217          166 -ASGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSL  238 (767)
Q Consensus       166 -aSgS~DG--tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd----~V~VWDl~t~~~~~~~~~l~~h~~~V  238 (767)
                       ++.+.++  .|.+||+.+++......+........|+|+|++|+..++.    .|++||+.+++..    .+..+...+
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----~l~~~~~~~  324 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----RLTFRGGYN  324 (417)
T ss_pred             EEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE----EeecCCCCc
Confidence             4555544  5889999888765555555555678999999988877642    2888888766532    234455667


Q ss_pred             EEEEEccCCCeEEEEEe
Q 004217          239 RAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       239 tsVaFSPDG~~LlaSgs  255 (767)
                      ..+.|+|||++++.+..
T Consensus       325 ~~~~~spdg~~i~~~~~  341 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHR  341 (417)
T ss_pred             cCeEECCCCCEEEEEEc
Confidence            88999999998887764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.22  E-value=9.4e-11  Score=132.34  Aligned_cols=138  Identities=23%  Similarity=0.366  Sum_probs=117.3

Q ss_pred             CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee
Q 004217          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR  188 (767)
Q Consensus       109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l  188 (767)
                      .|..++|-|||..|+.+..| .+.|||...|..+.++++|++.|++++|+. +++.|+||+.|+.|.+|.-+- +-+..+
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~kl-EG~LkY   90 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKL-EGILKY   90 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccc-cceeee
Confidence            79999999999998887655 799999999999999999999999999999 999999999999999997542 233446


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          189 DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       189 ~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      .|.+.|.|+.|+|....|++++-...-+|.........     ......|.+.+|..||++++.+-
T Consensus        91 SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-----~kss~R~~~CsWtnDGqylalG~  151 (1081)
T KOG1538|consen   91 SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-----HKSSSRIICCSWTNDGQYLALGM  151 (1081)
T ss_pred             ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-----hhhheeEEEeeecCCCcEEEEec
Confidence            79999999999999999999997778899876554322     22345788999999999887654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.22  E-value=5.7e-10  Score=123.39  Aligned_cols=213  Identities=15%  Similarity=0.181  Sum_probs=154.0

Q ss_pred             ceecccccccccC--CCccCcceeecccccceecC-----CcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---CCCC
Q 004217           36 RNVFGLLAQREVA--PRTKHSSKRLLGETARKCSG-----SFSQIFEAGRDARRGLASWVEAESLHHLRPKYC---PLSP  105 (767)
Q Consensus        36 rnVf~~~~kre~~--~~~~~~sk~~wd~~~~~~~~-----s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---~L~g  105 (767)
                      ..||.+...++-.  ...+.-....|+++......     .+....... +++..|+.|...+.|..-.++.+   ...+
T Consensus       288 ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~-e~~~di~vGTtrN~iL~Gt~~~~f~~~v~g  366 (626)
T KOG2106|consen  288 GGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA-EGKGDILVGTTRNFILQGTLENGFTLTVQG  366 (626)
T ss_pred             CceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEe-cCCCcEEEeeccceEEEeeecCCceEEEEe
Confidence            3455554444321  13333445567766543321     122333333 34444777887887777776655   4569


Q ss_pred             CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEE
Q 004217          106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI  185 (767)
Q Consensus       106 H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i  185 (767)
                      |.+....++..|+..++++++.|+.|++|+  ..+.+.+.. -..++.++.|+| .+ .++.|...|...+.|.++...+
T Consensus       367 h~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv  441 (626)
T KOG2106|consen  367 HGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLV  441 (626)
T ss_pred             cccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccceEEEEecccceeE
Confidence            999999999999999999999999999999  444443332 356788999999 55 9999999999999999998887


Q ss_pred             EeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          186 GSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       186 ~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .......++++++|+|+|.+||+|+.|. |+||-+....... ...-.-+...|+.+.||+|++++.+-+.
T Consensus       442 ~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y-~r~~k~~gs~ithLDwS~Ds~~~~~~S~  511 (626)
T KOG2106|consen  442 TIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY-SRVGKCSGSPITHLDWSSDSQFLVSNSG  511 (626)
T ss_pred             EEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE-EEeeeecCceeEEeeecCCCceEEeccC
Confidence            7766689999999999999999999665 9999987655432 1122234589999999999998877555

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.21  E-value=4e-11  Score=142.73  Aligned_cols=181  Identities=17%  Similarity=0.150  Sum_probs=142.6

Q ss_pred             eEEEEEEc-CCCEEEEEeCCCeEEEEeCCCCCCC------CCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEE
Q 004217           72 QIFEAGRD-ARRGLASWVEAESLHHLRPKYCPLS------PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLK  143 (767)
Q Consensus        72 ~~~vA~sd-~g~~LaSgs~DgsIrlWd~~t~~L~------gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~  143 (767)
                      ++-+-+.. .+..|++|..||.|.+||+..-+..      ...+.|.+++|+. ....|++++.+|.+.|||++..+.+-
T Consensus       119 V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii  198 (1049)
T KOG0307|consen  119 VLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII  198 (1049)
T ss_pred             eeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc
Confidence            33344443 4559999999999999999874221      2456799999998 56678999999999999999988887


Q ss_pred             EEccCCC--CcEEEEEccCCCcEEEEEeCCC---eEEEEECCC-CeEEEee-cCCCCeEEEEEcCCC-CEEEEEEC-CcE
Q 004217          144 VLHGHRR--TPWVVRFHPLNPTIIASGSLDH---EVRLWNAST-AECIGSR-DFYRPIASIAFHASG-ELLAVASG-HKL  214 (767)
Q Consensus       144 ~L~gH~~--~V~sLafsP~dg~lLaSgS~DG---tVrIWDl~t-g~~i~~l-~h~~~VtsVafSPdG-~~LAsgSd-d~V  214 (767)
                      .+..|.+  .+..++|||++...+++++.|.   .|.+||+|. ...++++ .|...|.++.|++.+ ++|++++. ++|
T Consensus       199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~i  278 (1049)
T KOG0307|consen  199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRI  278 (1049)
T ss_pred             ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCe
Confidence            7766554  4778999998888888888764   699999985 3456666 599999999999988 67777774 459


Q ss_pred             EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       215 ~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .+|+.++++.+.   .+....+++..+.|+|...-+++.++
T Consensus       279 i~wN~~tgEvl~---~~p~~~nW~fdv~w~pr~P~~~A~as  316 (1049)
T KOG0307|consen  279 ICWNPNTGEVLG---ELPAQGNWCFDVQWCPRNPSVMAAAS  316 (1049)
T ss_pred             eEecCCCceEee---ecCCCCcceeeeeecCCCcchhhhhe
Confidence            999999998765   45556789999999998876666554

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.20  E-value=2.2e-10  Score=119.68  Aligned_cols=147  Identities=16%  Similarity=0.258  Sum_probs=118.9

Q ss_pred             CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE-EEEE-----ccCCCCcEEEEEcc-CCCcEEEEEeCCCeEEEE
Q 004217          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC-LKVL-----HGHRRTPWVVRFHP-LNPTIIASGSLDHEVRLW  177 (767)
Q Consensus       105 gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~-l~~L-----~gH~~~V~sLafsP-~dg~lLaSgS~DGtVrIW  177 (767)
                      .+-+.|.|+.|.|++..|++-. |..|.+|+++.+.. +..+     .+|+...++-+|+| .+++.+++. .|+++..|
T Consensus       121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~  198 (370)
T KOG1007|consen  121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFW  198 (370)
T ss_pred             HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEE
Confidence            4566899999999999998876 78999999988765 3333     23566788889999 456666654 69999999


Q ss_pred             ECCCCeEEEeec--CCCCeEEEEEcCCCC-EEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217          178 NASTAECIGSRD--FYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       178 Dl~tg~~i~~l~--h~~~VtsVafSPdG~-~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      |+++.++...++  |...|..+.|+|+-+ +|++++|++ |+|||.+..+.  +.+.+.+|..+|.+|.|+|--..|+.+
T Consensus       199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~el~~HsHWvW~VRfn~~hdqLiLs  276 (370)
T KOG1007|consen  199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQELPGHSHWVWAVRFNPEHDQLILS  276 (370)
T ss_pred             EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccccCCCceEEEEEEecCccceEEEe
Confidence            999988877764  788899999999987 677777766 99999998775  446788999999999999987777776


Q ss_pred             Ee
Q 004217          254 AE  255 (767)
Q Consensus       254 gs  255 (767)
                      ++
T Consensus       277 ~~  278 (370)
T KOG1007|consen  277 GG  278 (370)
T ss_pred             cC
Confidence            65

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=6.4e-10  Score=125.93  Aligned_cols=175  Identities=15%  Similarity=0.089  Sum_probs=121.1

Q ss_pred             eEEEEEEcCCCEEEEEeCC---CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEEe-CCCeEEEE--ECCCCeEE
Q 004217           72 QIFEAGRDARRGLASWVEA---ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTH-GDHTVKII--DCQTGSCL  142 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~D---gsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASgs-~DGtVrVW--Dl~tg~~l  142 (767)
                      .....++.+++.|+..+.+   ..|.+||+.+++   +....+....++|+|||++|+.+. .+|.+.||  |+.+++ +
T Consensus       206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~  284 (429)
T PRK01742        206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-P  284 (429)
T ss_pred             cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-e
Confidence            4456677888888876543   369999998763   333333455789999999988765 57765554  666665 4


Q ss_pred             EEEccCCCCcEEEEEccCCCcEEEE-EeCCCeEEEEECCCC-eEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcC
Q 004217          143 KVLHGHRRTPWVVRFHPLNPTIIAS-GSLDHEVRLWNASTA-ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYN  220 (767)
Q Consensus       143 ~~L~gH~~~V~sLafsP~dg~lLaS-gS~DGtVrIWDl~tg-~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~  220 (767)
                      ..+..+...+....|+| +++.|+. ...++...||++... .....+.+..  ....|+|+|++|+..+.+.+.+||+.
T Consensus       285 ~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~  361 (429)
T PRK01742        285 SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDNVVKQDLT  361 (429)
T ss_pred             EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCCEEEEECC
Confidence            55666777788999999 7776554 446788888876532 2223333333  45789999999998887788889998


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +++...    +..+ ....++.|+|||+.|+.++.
T Consensus       362 ~g~~~~----lt~~-~~~~~~~~sPdG~~i~~~s~  391 (429)
T PRK01742        362 SGSTEV----LSST-FLDESPSISPNGIMIIYSST  391 (429)
T ss_pred             CCCeEE----ecCC-CCCCCceECCCCCEEEEEEc
Confidence            876432    1111 13457889999998887764

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.18  E-value=3.4e-10  Score=125.78  Aligned_cols=165  Identities=16%  Similarity=0.142  Sum_probs=133.8

Q ss_pred             EEEEEcCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCC
Q 004217           74 FEAGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (767)
Q Consensus        74 ~vA~sd~g~~LaSgs~DgsIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~  150 (767)
                      +-..+.+|..|++.++||.|++|.-...   .+.....+|.|++|.|+.+.++.|-. +.+.|=-+.-...+-..+.|.+
T Consensus       109 ~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDG  187 (737)
T KOG1524|consen  109 SGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDG  187 (737)
T ss_pred             hcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccccceeEEeccCc
Confidence            3446679999999999999999997543   35566778999999998777766554 4667767776666777899999


Q ss_pred             CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeE
Q 004217          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRI  230 (767)
Q Consensus       151 ~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~  230 (767)
                      -|.++.|++ ..+++++|++|-..++||-........-.|..+|++++|.|+ +.++.++.+.+++=             
T Consensus       188 iiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~-------------  252 (737)
T KOG1524|consen  188 LVLSLSWST-QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYNTARFS-------------  252 (737)
T ss_pred             EEEEeecCc-cccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeeeeeeec-------------
Confidence            999999999 899999999999999999876666666779999999999999 88888887776621             


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEe
Q 004217          231 VLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       231 l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                       ....+.|..++||+||..+..+++
T Consensus       253 -~p~~GSifnlsWS~DGTQ~a~gt~  276 (737)
T KOG1524|consen  253 -SPRVGSIFNLSWSADGTQATCGTS  276 (737)
T ss_pred             -CCCccceEEEEEcCCCceeecccc
Confidence             123467899999999997766554

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.18  E-value=8.5e-10  Score=116.83  Aligned_cols=215  Identities=14%  Similarity=0.120  Sum_probs=150.0

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCCC----------CC-------CCCCCeEEEEEC-------CCCCeEEEEeCCCe
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYCP----------LS-------PPPRSTIAAAFS-------PDGKTLASTHGDHT  130 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~~----------L~-------gH~~sVtsVaFS-------pDG~~LASgs~DGt  130 (767)
                      ..++.+|..|.+-++|+.+++|++...-          +.       .....|..-+|-       |+-.++++.+.|.-
T Consensus        55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P  134 (406)
T KOG2919|consen   55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP  134 (406)
T ss_pred             ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence            3466899999999999999999985421          11       123457777775       67789999999999


Q ss_pred             EEEEECCCCeEEEEEcc--CCC---CcEEEEEccCCCcEEEEEeCCCeEEEEEC-CCCeEEEe--------ecCCCCeEE
Q 004217          131 VKIIDCQTGSCLKVLHG--HRR---TPWVVRFHPLNPTIIASGSLDHEVRLWNA-STAECIGS--------RDFYRPIAS  196 (767)
Q Consensus       131 VrVWDl~tg~~l~~L~g--H~~---~V~sLafsP~dg~lLaSgS~DGtVrIWDl-~tg~~i~~--------l~h~~~Vts  196 (767)
                      |++||.-+|+....+.+  |.+   ...+++|+| |+..|+.| ...+|++||+ +.|.-...        +...+-+.+
T Consensus       135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc  212 (406)
T KOG2919|consen  135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISC  212 (406)
T ss_pred             eeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeee
Confidence            99999999998777654  333   346899999 88888765 6788999999 44442211        224567899


Q ss_pred             EEEcCCCC-EEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeE
Q 004217          197 IAFHASGE-LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTL  268 (767)
Q Consensus       197 VafSPdG~-~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~~~~l  268 (767)
                      ++|+|... .+++|+.+. +-||.-.....+   ..+.+|.+.|+.++|++||+.|++.+.      .||++...  ..+
T Consensus       213 ~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl---~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~pv  287 (406)
T KOG2919|consen  213 FAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL---QLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR--DPV  287 (406)
T ss_pred             eeccCCCCcceeeecccceeeeEecCCCCce---eeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--chh
Confidence            99999765 899998655 555554455543   377799999999999999998888776      88888432  233


Q ss_pred             eecCCCccCCCCeEEEecCCCCCCCceeec
Q 004217          269 ATSPGYWRYPPPVICMAGAHSSSHPGLAEE  298 (767)
Q Consensus       269 ~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg  298 (767)
                      ..+.+|..-..-.|.|..  .++...|++|
T Consensus       288 ~~L~rhv~~TNQRI~FDl--d~~~~~LasG  315 (406)
T KOG2919|consen  288 YALERHVGDTNQRILFDL--DPKGEILASG  315 (406)
T ss_pred             hhhhhhccCccceEEEec--CCCCceeecc
Confidence            333444332223344433  3344455555

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=5.7e-09  Score=118.34  Aligned_cols=177  Identities=15%  Similarity=0.072  Sum_probs=121.2

Q ss_pred             eEEEEEEcCCCEEEEEe---CCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEE-eCCC--eEEEEECCCCeEE
Q 004217           72 QIFEAGRDARRGLASWV---EAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGDH--TVKIIDCQTGSCL  142 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs---~DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASg-s~DG--tVrVWDl~tg~~l  142 (767)
                      .....++.+|+.|+..+   .+..|.+|++.+++   +....+.+..++|||||+.|+.. +.++  .|++||+++++..
T Consensus       201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~  280 (429)
T PRK03629        201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR  280 (429)
T ss_pred             eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence            44566777888877543   24568999988763   33444556679999999988865 3344  5999999988754


Q ss_pred             EEEccCCCCcEEEEEccCCCcEEEEEeCC-Ce--EEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC-C---cEE
Q 004217          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLD-HE--VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-H---KLY  215 (767)
Q Consensus       143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~D-Gt--VrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd-d---~V~  215 (767)
                       .+..+...+....|+| +++.|+..+.+ +.  |.++|+.+++..........+....|+|||++|+..+. +   .|+
T Consensus       281 -~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~  358 (429)
T PRK03629        281 -QVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIA  358 (429)
T ss_pred             -EccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEE
Confidence             4444455678899999 78877666653 44  44557777665444334445667899999999887663 2   289


Q ss_pred             EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       216 VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +||+.+++...    +.. ........|+|||+.|+.++.
T Consensus       359 ~~dl~~g~~~~----Lt~-~~~~~~p~~SpDG~~i~~~s~  393 (429)
T PRK03629        359 KQDLATGGVQV----LTD-TFLDETPSIAPNGTMVIYSSS  393 (429)
T ss_pred             EEECCCCCeEE----eCC-CCCCCCceECCCCCEEEEEEc
Confidence            99998775422    222 123457889999998887764

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.16  E-value=2.1e-10  Score=130.64  Aligned_cols=142  Identities=22%  Similarity=0.230  Sum_probs=119.2

Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEeCC-----CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEE
Q 004217          102 PLSPPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG~~LASgs~D-----GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrI  176 (767)
                      +|.||.-.|++++.||+|++||+++..     -.|+||+..+-..+..+.+|.-.|+.++|+| |+++|++.+.|.++.+
T Consensus       520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl  598 (764)
T KOG1063|consen  520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSL  598 (764)
T ss_pred             HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEe
Confidence            466999999999999999999999874     3599999998888889999999999999999 9999999999999999


Q ss_pred             EECCCCeEEE-----eecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCC--ccccCCeEEecCCCCeEEEEEcc
Q 004217          177 WNASTAECIG-----SRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMR--EETSSPRIVLRTRRSLRAVHFHP  245 (767)
Q Consensus       177 WDl~tg~~i~-----~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~--~~~~~~~~l~~h~~~VtsVaFSP  245 (767)
                      |.........     ...|..-|.+..|+|++.+++++|.|+ |+||.....  +.+. ......+...|++++|.|
T Consensus       599 ~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~-~~a~~~~~~aVTAv~~~~  674 (764)
T KOG1063|consen  599 YEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYIS-RFACLKFSLAVTAVAYLP  674 (764)
T ss_pred             eeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhh-hhchhccCCceeeEEeec
Confidence            9875432211     234788899999999999999999777 999998776  3322 114556789999999987

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.15  E-value=6.2e-09  Score=113.07  Aligned_cols=183  Identities=16%  Similarity=0.137  Sum_probs=121.3

Q ss_pred             eEEEEEEcCCCEEEEEe-CCCeEEEEeCCCC-CC------CCCCCCeEEEEECCCCCeEEEEe-CCCeEEEEECCCCeEE
Q 004217           72 QIFEAGRDARRGLASWV-EAESLHHLRPKYC-PL------SPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCL  142 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs-~DgsIrlWd~~t~-~L------~gH~~sVtsVaFSpDG~~LASgs-~DGtVrVWDl~tg~~l  142 (767)
                      +.-+++..+++.+++.. .++.|.+|+++.. .+      ..+......++|+|||++|++++ .++.|.+||+++...+
T Consensus        82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l  161 (330)
T PRK11028         82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL  161 (330)
T ss_pred             ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence            45577777888888765 4889999998642 11      12334578899999999886554 5699999999864322


Q ss_pred             EE-----Ec-cCCCCcEEEEEccCCCcEEEEEeC-CCeEEEEECCC--Ce--EEEeec-------CCCCeEEEEEcCCCC
Q 004217          143 KV-----LH-GHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWNAST--AE--CIGSRD-------FYRPIASIAFHASGE  204 (767)
Q Consensus       143 ~~-----L~-gH~~~V~sLafsP~dg~lLaSgS~-DGtVrIWDl~t--g~--~i~~l~-------h~~~VtsVafSPdG~  204 (767)
                      ..     .. ........+.|+| ++++++++.. +++|.+||+..  ++  .+..+.       .......+.|+|+|+
T Consensus       162 ~~~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~  240 (330)
T PRK11028        162 VAQEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR  240 (330)
T ss_pred             cccCCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence            11     11 1123467899999 8888777665 99999999973  33  233321       112334688999999


Q ss_pred             EEEEEEC--CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          205 LLAVASG--HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       205 ~LAsgSd--d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +++++..  +.|.+|++.....................+.|+|||++|+++..
T Consensus       241 ~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        241 HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence            9999863  44999999654321101111111235568999999999988764

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=1.2e-09  Score=117.71  Aligned_cols=248  Identities=13%  Similarity=0.056  Sum_probs=169.7

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---------CCC--CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC---------PLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS  140 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---------~L~--gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~  140 (767)
                      .-++.++.++++|++|..|..+++|.++.-         .+.  .|...|.|++|+...++|++|..+++|.+.|+++.+
T Consensus        59 iNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~q  138 (609)
T KOG4227|consen   59 INALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQ  138 (609)
T ss_pred             cceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccce
Confidence            344667788999999999999999998642         233  355789999999999999999999999999999998


Q ss_pred             EEEEEcc--CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe----EEEeecCCCCeEEEEEcCCCC-EEEEEEC-C
Q 004217          141 CLKVLHG--HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE----CIGSRDFYRPIASIAFHASGE-LLAVASG-H  212 (767)
Q Consensus       141 ~l~~L~g--H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~----~i~~l~h~~~VtsVafSPdG~-~LAsgSd-d  212 (767)
                      .+..+..  ..+.|+.+..+| ..+.|++.+.++.|.+||++...    ++...........+-|+|... +|++.+. +
T Consensus       139 si~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~  217 (609)
T KOG4227|consen  139 SIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETG  217 (609)
T ss_pred             eeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccC
Confidence            8877642  335899999999 68999999999999999998754    333334567788899999875 6666664 5


Q ss_pred             cEEEEEcCCCcccc-CCeEEecCC---CCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEe--ecCCCccCC-CC
Q 004217          213 KLYIWRYNMREETS-SPRIVLRTR---RSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA--TSPGYWRYP-PP  280 (767)
Q Consensus       213 ~V~VWDl~t~~~~~-~~~~l~~h~---~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~--t~sG~~~~p-~~  280 (767)
                      ++-+||.+...... ......+-.   ..-.++.|+|+|..+++--.     ..|+-...+.....  -.+||.+.. ..
T Consensus       218 G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~K  297 (609)
T KOG4227|consen  218 GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIK  297 (609)
T ss_pred             CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeee
Confidence            59999998765321 011111111   12357889999997776433     44444333322211  123554422 12


Q ss_pred             eEEEecCCCCCCCceeeccCCCCCCce-eeEEecCCCEEEEeecCC
Q 004217          281 VICMAGAHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISLQHTEH  325 (767)
Q Consensus       281 ~v~l~~~~Ssd~~~L~sg~~~~slpil-~psFSpDg~rIva~~~~~  325 (767)
                      .++|.     +...+++|+-...+.+| .|+-...+....++|+..
T Consensus       298 S~~F~-----~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~  338 (609)
T KOG4227|consen  298 SMTFI-----DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEE  338 (609)
T ss_pred             eeeee-----cceeeeccCcccceEEEecCCCccccCccccCcchh
Confidence            23332     34458888888888888 555444455555555433

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=4.3e-09  Score=108.07  Aligned_cols=165  Identities=21%  Similarity=0.240  Sum_probs=124.7

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC------------CCCCCC-----CCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE
Q 004217           81 RRGLASWVEAESLHHLRPKYC------------PLSPPP-----RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK  143 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t~------------~L~gH~-----~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~  143 (767)
                      ...|+++. ||.|+=|.-...            +..-|.     -.|+++-..|..+-|+.++.|+.++-||+++|+..+
T Consensus        72 d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r  150 (325)
T KOG0649|consen   72 DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR  150 (325)
T ss_pred             hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE
Confidence            55666664 588887765431            111232     358999999976667777799999999999999999


Q ss_pred             EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCC-----------CCeEEEEEcCCCCEEEEEECC
Q 004217          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-----------RPIASIAFHASGELLAVASGH  212 (767)
Q Consensus       144 ~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~-----------~~VtsVafSPdG~~LAsgSdd  212 (767)
                      .++||++.|.++.--. ....++||++||++|+||.++++++..++..           ..|.+++  -+..++++|+..
T Consensus       151 ~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp  227 (325)
T KOG0649|consen  151 EYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGP  227 (325)
T ss_pred             EEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCC
Confidence            9999999999998744 4667999999999999999999999886522           2344444  456699998888


Q ss_pred             cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          213 KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       213 ~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .+.+|+++..+...    ...-...|..+.|..|  .+++.+.
T Consensus       228 ~lslwhLrsse~t~----vfpipa~v~~v~F~~d--~vl~~G~  264 (325)
T KOG0649|consen  228 KLSLWHLRSSESTC----VFPIPARVHLVDFVDD--CVLIGGE  264 (325)
T ss_pred             ceeEEeccCCCceE----EEecccceeEeeeecc--eEEEecc
Confidence            89999999887544    4455677888888644  3566664

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.14  E-value=1.5e-09  Score=116.71  Aligned_cols=158  Identities=18%  Similarity=0.211  Sum_probs=119.7

Q ss_pred             CeEEEEeCCCCCCC---CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc---CCCCcEEEEEccCCCcE
Q 004217           91 ESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG---HRRTPWVVRFHPLNPTI  164 (767)
Q Consensus        91 gsIrlWd~~t~~L~---gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g---H~~~V~sLafsP~dg~l  164 (767)
                      ..+++.+.+.+...   ....+|.+|.++.  ++|+++-.+ .|+|||+++.+.++++..   +...+.++++++ ++.+
T Consensus        68 r~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~y  143 (391)
T KOG2110|consen   68 RKLKVVHFKKKTTICEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCY  143 (391)
T ss_pred             ceEEEEEcccCceEEEEecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC-CCce
Confidence            55777777654211   2356799999984  567766665 499999999999988854   344565565555 4456


Q ss_pred             EEEE-e-CCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc--EEEEEcCCCccccCCeEEecC--CCC
Q 004217          165 IASG-S-LDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLRT--RRS  237 (767)
Q Consensus       165 LaSg-S-~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~--V~VWDl~t~~~~~~~~~l~~h--~~~  237 (767)
                      ++.- + ..|.|.+||+.+-+.+..+. |++.+.+++|+++|.+||++++.+  |+|+.+.+++.+.   .+...  ...
T Consensus       144 lAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~---eFRRG~~~~~  220 (391)
T KOG2110|consen  144 LAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY---EFRRGTYPVS  220 (391)
T ss_pred             EEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee---eeeCCceeeE
Confidence            6652 2 35899999999988888765 999999999999999999999866  9999999988655   22222  456


Q ss_pred             eEEEEEccCCCeEEEEEe
Q 004217          238 LRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       238 VtsVaFSPDG~~LlaSgs  255 (767)
                      |++++|+||+++|.++++
T Consensus       221 IySL~Fs~ds~~L~~sS~  238 (391)
T KOG2110|consen  221 IYSLSFSPDSQFLAASSN  238 (391)
T ss_pred             EEEEEECCCCCeEEEecC
Confidence            899999999998887776

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=3.1e-10  Score=120.91  Aligned_cols=137  Identities=21%  Similarity=0.361  Sum_probs=112.1

Q ss_pred             CeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccC-CCcEEEEEeCCCeEEEEECCCCeEEEeec---CC-CCe
Q 004217          120 KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL-NPTIIASGSLDHEVRLWNASTAECIGSRD---FY-RPI  194 (767)
Q Consensus       120 ~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~-dg~lLaSgS~DGtVrIWDl~tg~~i~~l~---h~-~~V  194 (767)
                      ..+|++...|.|++||..+++.+..|+++...+..++|... ..+.+.+|+.||+|++||++....+..+.   +. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            56888888999999999999999999999999999999763 46789999999999999999876655432   22 356


Q ss_pred             EEEEEcCCCCEEEEEEC----Cc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 004217          195 ASIAFHASGELLAVASG----HK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN  257 (767)
Q Consensus       195 tsVafSPdG~~LAsgSd----d~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvw  257 (767)
                      .+++...+++.+++|..    +- |.+||+|..+... ......|.+.|++|.|+|....++++|+++
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l-~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD  187 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLL-RQLNESHNDDVTQLRFHPSDPNLLLSGSVD  187 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchh-hhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence            67777668889999873    22 9999999887622 134567999999999999999999999854

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=3.7e-09  Score=111.49  Aligned_cols=143  Identities=23%  Similarity=0.327  Sum_probs=108.0

Q ss_pred             CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC----eEEEEEccCCCCcEEEEEc-cCCCcEEEEEeCCCeEEEEE
Q 004217          104 SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG----SCLKVLHGHRRTPWVVRFH-PLNPTIIASGSLDHEVRLWN  178 (767)
Q Consensus       104 ~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg----~~l~~L~gH~~~V~sLafs-P~dg~lLaSgS~DGtVrIWD  178 (767)
                      .+|.+-|+++.|++-|+++|+|+.|++|+|||.++.    .+....+.|.+.|..|.|. |.-++.+++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            478899999999999999999999999999997543    4667788999999999995 65688999999999999997


Q ss_pred             CCC------C-eEE--Ee-ecCCCCeEEEEEcCC--CCEEEEEECCc-EEEEEcCCCccccCC----------eEEecCC
Q 004217          179 AST------A-ECI--GS-RDFYRPIASIAFHAS--GELLAVASGHK-LYIWRYNMREETSSP----------RIVLRTR  235 (767)
Q Consensus       179 l~t------g-~~i--~~-l~h~~~VtsVafSPd--G~~LAsgSdd~-V~VWDl~t~~~~~~~----------~~l~~h~  235 (767)
                      -..      + +-+  .+ ......|+.|.|.|.  |-.||+++.|+ |+||+......+...          .....+.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            521      1 111  12 346789999999996  45788888666 999987654332200          0111355


Q ss_pred             CCeEEEEEccC
Q 004217          236 RSLRAVHFHPH  246 (767)
Q Consensus       236 ~~VtsVaFSPD  246 (767)
                      ....||.|+|.
T Consensus       170 ~~~~CvsWn~s  180 (361)
T KOG2445|consen  170 QPCFCVSWNPS  180 (361)
T ss_pred             CcceEEeeccc
Confidence            66778888864

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=4.9e-09  Score=118.87  Aligned_cols=177  Identities=14%  Similarity=0.139  Sum_probs=126.6

Q ss_pred             eEEEEEEcCCCEEEEEeC---CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEE-EEeCCC--eEEEEECCCCeEE
Q 004217           72 QIFEAGRDARRGLASWVE---AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLA-STHGDH--TVKIIDCQTGSCL  142 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~---DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LA-Sgs~DG--tVrVWDl~tg~~l  142 (767)
                      .....++.+++.|+..+.   +..|.+||+.+++   +..+.+.+...+|||||+.|+ +.+.++  .|.+||+++++. 
T Consensus       204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-  282 (435)
T PRK05137        204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-  282 (435)
T ss_pred             eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-
Confidence            445666778888776653   4679999998763   556777888999999999876 445555  477889888764 


Q ss_pred             EEEccCCCCcEEEEEccCCCcEEEEEeC-CC--eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC--C--cEE
Q 004217          143 KVLHGHRRTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--H--KLY  215 (767)
Q Consensus       143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~-DG--tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd--d--~V~  215 (767)
                      ..+..+........|+| +++.++..+. ++  .|.+||+.+++..........+....|+|+|++|+..+.  +  .|.
T Consensus       283 ~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~  361 (435)
T PRK05137        283 TRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIG  361 (435)
T ss_pred             EEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEE
Confidence            45666666677899999 7777776653 33  688889887766555444556677899999999988763  2  288


Q ss_pred             EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       216 VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +||+..+.. .   .+ .....+..+.|+|||+.|+.+..
T Consensus       362 ~~d~~~~~~-~---~l-t~~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        362 VMKPDGSGE-R---IL-TSGFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             EEECCCCce-E---ec-cCCCCCCCCeECCCCCEEEEEEc
Confidence            899765542 1   12 22335678999999998877664

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=1e-08  Score=116.94  Aligned_cols=158  Identities=17%  Similarity=0.156  Sum_probs=108.4

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCC---CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEE
Q 004217           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (767)
Q Consensus        92 sIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~D---GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lL  165 (767)
                      .|.++|....   .+..+...+....|||||++|+..+.+   ..|++||+.+++... +....+......|+| +++.|
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSP-DG~~L  276 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSP-DGKKL  276 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECC-CCCEE
Confidence            4566665443   355667788999999999999877543   368999998876432 322233345789999 66655


Q ss_pred             E-EEeCCCe--EEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC--Cc--EEEEEcCCCccccCCeEEecCCCCe
Q 004217          166 A-SGSLDHE--VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HK--LYIWRYNMREETSSPRIVLRTRRSL  238 (767)
Q Consensus       166 a-SgS~DGt--VrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd--d~--V~VWDl~t~~~~~~~~~l~~h~~~V  238 (767)
                      + +.+.++.  |.+||+.+++......+.......+|+|||++|+..++  +.  |+++|+.+++...    +.......
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~----Lt~~g~~~  352 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR----LTFEGEQN  352 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----EecCCCCC
Confidence            4 5666665  77789988876655555556678899999998887774  22  8888887765422    22222334


Q ss_pred             EEEEEccCCCeEEEEEe
Q 004217          239 RAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       239 tsVaFSPDG~~LlaSgs  255 (767)
                      ...+|+|||++|+.+..
T Consensus       353 ~~~~~SpDG~~l~~~~~  369 (448)
T PRK04792        353 LGGSITPDGRSMIMVNR  369 (448)
T ss_pred             cCeeECCCCCEEEEEEe
Confidence            56799999998887653

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.13  E-value=8.4e-10  Score=115.53  Aligned_cols=174  Identities=10%  Similarity=0.155  Sum_probs=133.5

Q ss_pred             EcCCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCC-CeEEEEeCCCeEEEEECCCCeEEEEE-cc-
Q 004217           78 RDARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCLKVL-HG-  147 (767)
Q Consensus        78 sd~g~~LaSgs~DgsIrlWd~~t~-------~L~gH~~sVtsVaFSpDG-~~LASgs~DGtVrVWDl~tg~~l~~L-~g-  147 (767)
                      .-+-.+|.+.+-|.+..+||++++       +|..|...|.+|+|..++ +.+|+.+.||.||+||++..+.-..+ +. 
T Consensus       160 e~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p  239 (364)
T KOG0290|consen  160 EVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP  239 (364)
T ss_pred             cCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC
Confidence            345678889999999999999885       477999999999999855 57899999999999999876543333 22 


Q ss_pred             -CCCCcEEEEEccCCCcEEEEEeCC-CeEEEEECCCC-eEEEee-cCCCCeEEEEEcCCCC-EEEEEECCc-EEEEEcCC
Q 004217          148 -HRRTPWVVRFHPLNPTIIASGSLD-HEVRLWNASTA-ECIGSR-DFYRPIASIAFHASGE-LLAVASGHK-LYIWRYNM  221 (767)
Q Consensus       148 -H~~~V~sLafsP~dg~lLaSgS~D-GtVrIWDl~tg-~~i~~l-~h~~~VtsVafSPdG~-~LAsgSdd~-V~VWDl~t  221 (767)
                       ...+...++|++.+.+++++-..| ..|.|-|++.. ..+..+ +|...|+.++|.|... +|.+++||. +.+||+.+
T Consensus       240 ~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  240 SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence             145678899999889999986655 57999999974 345554 5999999999999764 888888887 99999976


Q ss_pred             Ccc--ccCCeEEecCCCCeEEEEEccCC-CeEE
Q 004217          222 REE--TSSPRIVLRTRRSLRAVHFHPHA-APLL  251 (767)
Q Consensus       222 ~~~--~~~~~~l~~h~~~VtsVaFSPDG-~~Ll  251 (767)
                      .-.  ...+.....-...|+.+.|++.. .++.
T Consensus       320 ~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwia  352 (364)
T KOG0290|consen  320 MPRENGEDPILAYTAGGEVNQIQWSSSQPDWIA  352 (364)
T ss_pred             ccccCCCCchhhhhccceeeeeeecccCCCEEE
Confidence            432  22222333457789999999754 4443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=9e-09  Score=116.14  Aligned_cols=158  Identities=14%  Similarity=0.130  Sum_probs=110.4

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCC---CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEE
Q 004217           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (767)
Q Consensus        92 sIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~D---GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lL  165 (767)
                      .|.++|.+..   .+..+...+...+|||||+.|+..+.+   ..|.+||+.+++... +....+.+....|+| +++.|
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~Sp-DG~~l  257 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSP-DGSKL  257 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECC-CCCEE
Confidence            3666676544   355677889999999999999877654   369999999886433 333344556789999 66655


Q ss_pred             E-EEeCCC--eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC----cEEEEEcCCCccccCCeEEecCCCCe
Q 004217          166 A-SGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSL  238 (767)
Q Consensus       166 a-SgS~DG--tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd----~V~VWDl~t~~~~~~~~~l~~h~~~V  238 (767)
                      + +.+.++  .|.+||+.+++......+........|+|||+.|+..++.    .|+++|+.+++...    +.......
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~----lt~~~~~~  333 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER----VTFVGNYN  333 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----eecCCCCc
Confidence            5 555555  5888899988766554455556678999999988877742    28888887765422    21122334


Q ss_pred             EEEEEccCCCeEEEEEe
Q 004217          239 RAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       239 tsVaFSPDG~~LlaSgs  255 (767)
                      ....|+|||++++.+..
T Consensus       334 ~~~~~Spdg~~i~~~~~  350 (430)
T PRK00178        334 ARPRLSADGKTLVMVHR  350 (430)
T ss_pred             cceEECCCCCEEEEEEc
Confidence            46789999998887653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=6.9e-09  Score=117.64  Aligned_cols=175  Identities=15%  Similarity=0.081  Sum_probs=121.4

Q ss_pred             EEEEEcCCCEEEEEeC---CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEE-EeCCC--eEEEEECCCCeEEEE
Q 004217           74 FEAGRDARRGLASWVE---AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAS-THGDH--TVKIIDCQTGSCLKV  144 (767)
Q Consensus        74 ~vA~sd~g~~LaSgs~---DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LAS-gs~DG--tVrVWDl~tg~~l~~  144 (767)
                      ..+++.+++.|+..+.   ...|.+|++.+++   +..+.+...+++|+|||+.|+. .+.++  .|++||+.+++. ..
T Consensus       208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~  286 (433)
T PRK04922        208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TR  286 (433)
T ss_pred             cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EE
Confidence            3455677777777653   3469999998763   4445555668999999998764 45554  699999998874 45


Q ss_pred             EccCCCCcEEEEEccCCCcEEEEEe-CCCe--EEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC-C---cEEEE
Q 004217          145 LHGHRRTPWVVRFHPLNPTIIASGS-LDHE--VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-H---KLYIW  217 (767)
Q Consensus       145 L~gH~~~V~sLafsP~dg~lLaSgS-~DGt--VrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd-d---~V~VW  217 (767)
                      +..+.......+|+| +++.|+..+ .++.  |.++|+.+++.............++|+|+|++|+..+. +   .|.+|
T Consensus       287 lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~  365 (433)
T PRK04922        287 LTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVM  365 (433)
T ss_pred             CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEE
Confidence            555666667889999 777776665 3444  66677777765444333344557899999999887653 2   29999


Q ss_pred             EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       218 Dl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      |+.+++...    + .+......+.|+|||++++.+..
T Consensus       366 d~~~g~~~~----L-t~~~~~~~p~~spdG~~i~~~s~  398 (433)
T PRK04922        366 DLSTGSVRT----L-TPGSLDESPSFAPNGSMVLYATR  398 (433)
T ss_pred             ECCCCCeEE----C-CCCCCCCCceECCCCCEEEEEEe
Confidence            998775422    2 22234557899999998877664

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.11  E-value=4.3e-09  Score=119.24  Aligned_cols=216  Identities=17%  Similarity=0.164  Sum_probs=143.7

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCC
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~  150 (767)
                      +++..+|..|+... +..+.+||...+    ++++|++.|.|++|+.||+++|+|+.|..|.||+-+-...+ .+ .|++
T Consensus        18 ~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY-SH~D   94 (1081)
T KOG1538|consen   18 IAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY-SHND   94 (1081)
T ss_pred             eEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee-ccCC
Confidence            55667777777664 567899999876    68899999999999999999999999999999986422111 11 2444


Q ss_pred             Cc---------------------------------------EEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee---
Q 004217          151 TP---------------------------------------WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR---  188 (767)
Q Consensus       151 ~V---------------------------------------~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l---  188 (767)
                      .|                                       .+++|.. |+.+++-|-.||+|.|-+-...+.++.-   
T Consensus        95 ~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEek~~I~Rpg  173 (1081)
T KOG1538|consen   95 AIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEEKVKIERPG  173 (1081)
T ss_pred             eeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecC-CCcEEEEeccCceEEeecCCCCcceEEeCCC
Confidence            44                                       4455555 7889999999999998865443333332   


Q ss_pred             cCCCCeEEEEEcCCCC-----EEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCC
Q 004217          189 DFYRPIASIAFHASGE-----LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSS  262 (767)
Q Consensus       189 ~h~~~VtsVafSPdG~-----~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~  262 (767)
                      +.+.+|.+++|+|...     .+++...+. +.++.+.......    ...-.-...++.+.++|.+++.+|+...+.  
T Consensus       174 g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk----~r~L~FdP~CisYf~NGEy~LiGGsdk~L~--  247 (1081)
T KOG1538|consen  174 GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK----DRALNFDPCCISYFTNGEYILLGGSDKQLS--  247 (1081)
T ss_pred             CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc----cccCCCCchhheeccCCcEEEEccCCCceE--
Confidence            2678999999999642     666666554 7777665432211    111223456899999999999988643332  


Q ss_pred             CcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCC
Q 004217          263 ESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEH  325 (767)
Q Consensus       263 ~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~  325 (767)
                           +.+..|.        .+           .+ ....-..+|.+.-.|++..+.++.-+.
T Consensus       248 -----~fTR~Gv--------rL-----------GT-vg~~D~WIWtV~~~PNsQ~v~~GCqDG  285 (1081)
T KOG1538|consen  248 -----LFTRDGV--------RL-----------GT-VGEQDSWIWTVQAKPNSQYVVVGCQDG  285 (1081)
T ss_pred             -----EEeecCe--------EE-----------ee-ccccceeEEEEEEccCCceEEEEEccC
Confidence                 2222221        11           11 111334567788899999888866544

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.11  E-value=3.9e-09  Score=113.25  Aligned_cols=178  Identities=14%  Similarity=0.166  Sum_probs=130.6

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---CCC-CCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCC----eE-
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC---PLS-PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG----SC-  141 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---~L~-gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg----~~-  141 (767)
                      ..-++....-..++.+..|.+|++|+.+..   +++ .....|+|++|-| .++.|+.|+.. -|.||.....    .. 
T Consensus       101 lr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~  179 (445)
T KOG2139|consen  101 LRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNI  179 (445)
T ss_pred             eeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccc
Confidence            444566666777888999999999998764   232 3356799999999 56677877765 5899986421    11 


Q ss_pred             ---------EEEEccCCCCcEEEEEccCCCcEEEEEeC-CCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEE
Q 004217          142 ---------LKVLHGHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS  210 (767)
Q Consensus       142 ---------l~~L~gH~~~V~sLafsP~dg~lLaSgS~-DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgS  210 (767)
                               +..-.|| ..|++++|++ |+..+++++. |..|.|||..++.++... ...+.++-+.|||||.+|+.+.
T Consensus       180 ~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt  257 (445)
T KOG2139|consen  180 RMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT  257 (445)
T ss_pred             ccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec
Confidence                     1122355 5799999999 7888888765 678999999999888775 4567788899999999888887


Q ss_pred             CC-cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          211 GH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       211 dd-~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      -| ..++|+.....-..   ...-..+.|...+|+|+|++|+.++.
T Consensus       258 ~davfrlw~e~q~wt~e---rw~lgsgrvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  258 CDAVFRLWQENQSWTKE---RWILGSGRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             ccceeeeehhcccceec---ceeccCCceeeeeecCCCCEEEEEEc
Confidence            54 49999654332111   12223448999999999999988775

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.09  E-value=1.6e-08  Score=108.61  Aligned_cols=181  Identities=13%  Similarity=0.116  Sum_probs=128.1

Q ss_pred             eEEEEEEcCC-CEEEEEeCCCeEEEEeCCCC---------------C---CCCCCCCeEEEEECCCCCeEEEEeC-CCeE
Q 004217           72 QIFEAGRDAR-RGLASWVEAESLHHLRPKYC---------------P---LSPPPRSTIAAAFSPDGKTLASTHG-DHTV  131 (767)
Q Consensus        72 ~~~vA~sd~g-~~LaSgs~DgsIrlWd~~t~---------------~---L~gH~~sVtsVaFSpDG~~LASgs~-DGtV  131 (767)
                      ..+++++..+ ..|+.++ .+-|.+|.....               +   -.+| -.|+++.|++||..|++++. |..|
T Consensus       143 vtclawRPlsaselavgC-r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi  220 (445)
T KOG2139|consen  143 VTCLAWRPLSASELAVGC-RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSI  220 (445)
T ss_pred             eeEEEeccCCcceeeeee-cceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceE
Confidence            6777776643 4555555 445889987642               1   1244 57999999999999999876 6789


Q ss_pred             EEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEEC-CCCeEEEeecCCCCeEEEEEcCCCCEEEEEE
Q 004217          132 KIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA-STAECIGSRDFYRPIASIAFHASGELLAVAS  210 (767)
Q Consensus       132 rVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl-~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS  210 (767)
                      .|||.+++.++.....-.+.+.-+.|+| |+++|+.+.-|+..++|+. ++..+.+-.-..+.|...+|+|+|++|....
T Consensus       221 ~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~  299 (445)
T KOG2139|consen  221 MIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC  299 (445)
T ss_pred             EEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE
Confidence            9999999987665534456788999999 9999999999999999954 4444444444556999999999999887777


Q ss_pred             CCcEEEEEcCCCcc--ccC-------C---------eEEec---CCCCeEEEEEccCCCeEEEEEe
Q 004217          211 GHKLYIWRYNMREE--TSS-------P---------RIVLR---TRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       211 dd~V~VWDl~t~~~--~~~-------~---------~~l~~---h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .+.-++|.+....+  ...       .         ....+   ..+...+++|.|.|.+|+++-+
T Consensus       300 sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK  365 (445)
T KOG2139|consen  300 SGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK  365 (445)
T ss_pred             cCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence            66645554432111  000       0         00001   1456889999999999998765

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=2.4e-09  Score=120.42  Aligned_cols=149  Identities=20%  Similarity=0.351  Sum_probs=112.4

Q ss_pred             CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEE------
Q 004217          103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL------  176 (767)
Q Consensus       103 L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrI------  176 (767)
                      +.+|++.|.+|...|.|.+|++|+.||+|+||.+.+|.|++++. -.+.|.+|+|+|.....++....+..+.|      
T Consensus       396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G  474 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFG  474 (733)
T ss_pred             EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCcccc
Confidence            56999999999999999999999999999999999999998886 34579999999943333333333333333      


Q ss_pred             ---------------------------EECCCC-----eEEEeecCCCCeEEEEEcCCCCEEEEEEC----CcEEEEEcC
Q 004217          177 ---------------------------WNASTA-----ECIGSRDFYRPIASIAFHASGELLAVASG----HKLYIWRYN  220 (767)
Q Consensus       177 ---------------------------WDl~tg-----~~i~~l~h~~~VtsVafSPdG~~LAsgSd----d~V~VWDl~  220 (767)
                                                 |.-...     .....+.|...|..+.||..|.||++...    ..|.|+++.
T Consensus       475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS  554 (733)
T KOG0650|consen  475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS  554 (733)
T ss_pred             chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence                                       322210     01123567889999999999999999873    229999998


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ......   .+..-.+.|.++.|+|...+|+++..
T Consensus       555 K~~sQ~---PF~kskG~vq~v~FHPs~p~lfVaTq  586 (733)
T KOG0650|consen  555 KRKSQS---PFRKSKGLVQRVKFHPSKPYLFVATQ  586 (733)
T ss_pred             cccccC---chhhcCCceeEEEecCCCceEEEEec
Confidence            776543   23344678999999999998887765

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=1.1e-08  Score=115.75  Aligned_cols=177  Identities=20%  Similarity=0.121  Sum_probs=119.5

Q ss_pred             eEEEEEEcCCCEEEEEeCC---CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEE-EEeCCCeEEEEE--CCCCeEE
Q 004217           72 QIFEAGRDARRGLASWVEA---ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLA-STHGDHTVKIID--CQTGSCL  142 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~D---gsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LA-Sgs~DGtVrVWD--l~tg~~l  142 (767)
                      ....+++.+++.|+..+.+   ..|.+||+.+++   +....+.+.+.+|+|||+.|+ +.+.++...||.  +.++. +
T Consensus       198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~  276 (427)
T PRK02889        198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-L  276 (427)
T ss_pred             cccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-c
Confidence            3345667788888766532   359999998763   444556677899999999887 456677766664  54444 5


Q ss_pred             EEEccCCCCcEEEEEccCCCcEEEEEeC-CCeEEEEEC--CCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC-C---cEE
Q 004217          143 KVLHGHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWNA--STAECIGSRDFYRPIASIAFHASGELLAVASG-H---KLY  215 (767)
Q Consensus       143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~-DGtVrIWDl--~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd-d---~V~  215 (767)
                      ..+..+...+....|+| |++.++..+. ++...||.+  .+++..............+|+|+|++|+..+. +   .|+
T Consensus       277 ~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~  355 (427)
T PRK02889        277 RRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLY  355 (427)
T ss_pred             EECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEE
Confidence            55665666667789999 7777665553 566666654  45544333323334456889999999987763 2   299


Q ss_pred             EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       216 VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +||+.+++...    +.. ......+.|+|||+.|+.+..
T Consensus       356 v~d~~~g~~~~----lt~-~~~~~~p~~spdg~~l~~~~~  390 (427)
T PRK02889        356 VQDLATGQVTA----LTD-TTRDESPSFAPNGRYILYATQ  390 (427)
T ss_pred             EEECCCCCeEE----ccC-CCCccCceECCCCCEEEEEEe
Confidence            99998776422    222 233467899999998888765

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.07  E-value=1.4e-09  Score=121.21  Aligned_cols=149  Identities=16%  Similarity=0.159  Sum_probs=120.5

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCC-----CCCCCCeEEEEECC--CCCeEEEEeCCCeEEEEECCCC-----
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPL-----SPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTG-----  139 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L-----~gH~~sVtsVaFSp--DG~~LASgs~DGtVrVWDl~tg-----  139 (767)
                      +-+..+..+|..|++|+.|..+.+||....++     .+|...|.++.|-|  +.+++++|..|..|+++|+...     
T Consensus        53 VN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~  132 (758)
T KOG1310|consen   53 VNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGM  132 (758)
T ss_pred             ecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccccccc
Confidence            55688889999999999999999999986543     49999999999999  6678999999999999999741     


Q ss_pred             -----eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEE-------ee----cCCCCeEEEEEcCCC
Q 004217          140 -----SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG-------SR----DFYRPIASIAFHASG  203 (767)
Q Consensus       140 -----~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~-------~l----~h~~~VtsVafSPdG  203 (767)
                           ...+.+..|...|..|+-.|.+.+.|.++++||+|+-+|++......       .+    ..--...+++.+|..
T Consensus       133 d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~r  212 (758)
T KOG1310|consen  133 DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSR  212 (758)
T ss_pred             ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCC
Confidence                 23455678999999999999666999999999999999999633211       11    112345789999977


Q ss_pred             C-EEEEEECCc-EEEEEcC
Q 004217          204 E-LLAVASGHK-LYIWRYN  220 (767)
Q Consensus       204 ~-~LAsgSdd~-V~VWDl~  220 (767)
                      . +|++|+.+- .++||.+
T Consensus       213 p~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  213 PYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             CceEEecCCCchhhhhhhh
Confidence            5 788888766 9999954

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=2.2e-09  Score=117.06  Aligned_cols=144  Identities=18%  Similarity=0.222  Sum_probs=110.0

Q ss_pred             EEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-
Q 004217          111 IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-  189 (767)
Q Consensus       111 tsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-  189 (767)
                      .+++|+.||..|++++.||++|||+..+...+..+..|.+.|.++.|+| |+++|++.+.| ..+||+.+++.++.... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            7899999999999999999999999888887878888999999999999 99999999999 89999999997776654 


Q ss_pred             --CCCCeEEEEEcCCC---CEEEEEE--C-CcEEEEEcCCCcccc--CCeEEecCCCCeEEEEEccCCCeEEEEEee
Q 004217          190 --FYRPIASIAFHASG---ELLAVAS--G-HKLYIWRYNMREETS--SPRIVLRTRRSLRAVHFHPHAAPLLLTAEV  256 (767)
Q Consensus       190 --h~~~VtsVafSPdG---~~LAsgS--d-d~V~VWDl~t~~~~~--~~~~l~~h~~~VtsVaFSPDG~~LlaSgsv  256 (767)
                        .+.....+.|+-|+   .+.+.+.  . ++|+.||+.......  +......-...|.+++.++||++++.++..
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d  302 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD  302 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence              33445677888777   3333333  2 337777765333210  111222334689999999999988776653

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.00  E-value=8.9e-10  Score=122.74  Aligned_cols=94  Identities=27%  Similarity=0.373  Sum_probs=87.3

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEE
Q 004217          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG  186 (767)
Q Consensus       107 ~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~  186 (767)
                      .+.|+..+|||||++||+.+.||.+||+|..+.+.+..++..-+...|++|+| |+++|++|++|.-|.||.+...+.+.
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA  368 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA  368 (636)
T ss_pred             cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence            34789999999999999999999999999999888877777788899999999 99999999999999999999999887


Q ss_pred             e-ecCCCCeEEEEEcC
Q 004217          187 S-RDFYRPIASIAFHA  201 (767)
Q Consensus       187 ~-l~h~~~VtsVafSP  201 (767)
                      . .+|++.|..|+|+|
T Consensus       369 RGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  369 RGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eccccccceeeEeecc
Confidence            7 67999999999997

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.99  E-value=5.2e-08  Score=117.00  Aligned_cols=196  Identities=11%  Similarity=0.142  Sum_probs=140.7

Q ss_pred             EEEEEcCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC--e
Q 004217           74 FEAGRDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--S  140 (767)
Q Consensus        74 ~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg--~  140 (767)
                      ....++++..+++|+.||+||+|+...-           ++..-...+.++.+-+.++.+|.++.||.|++.+++..  +
T Consensus      1054 ~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~ 1133 (1431)
T KOG1240|consen 1054 LAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVS 1133 (1431)
T ss_pred             eeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccc
Confidence            3344556699999999999999998642           12224567888999999999999999999999998752  1


Q ss_pred             -----EEEEEccCC--CCcEEEEEccCCCc-EEEEEeCCCeEEEEECCCCeEEEeec---CCCCeEEEEEcCCCCEEEEE
Q 004217          141 -----CLKVLHGHR--RTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVA  209 (767)
Q Consensus       141 -----~l~~L~gH~--~~V~sLafsP~dg~-lLaSgS~DGtVrIWDl~tg~~i~~l~---h~~~VtsVafSPdG~~LAsg  209 (767)
                           +.+....+.  ..|..-+|...... .++.+..-+.|..||++.......++   ..+.|++++.+|.+.+++.|
T Consensus      1134 ~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviG 1213 (1431)
T KOG1240|consen 1134 KRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIG 1213 (1431)
T ss_pred             cceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEe
Confidence                 122222222  22333344443344 78888888999999999877666654   45789999999999999999


Q ss_pred             ECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCC---eEEEEEe-------eCCcCCCCcceeEeec
Q 004217          210 SGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA---PLLLTAE-------VNDLDSSESSLTLATS  271 (767)
Q Consensus       210 Sdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~---~LlaSgs-------vwdl~s~~~~~~l~t~  271 (767)
                      ...+ +.+||+|-+..+.  .....+..+++.+..+|...   ..++++.       .|++..+.+...+...
T Consensus      1214 ts~G~l~lWDLRF~~~i~--sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1214 TSRGQLVLWDLRFRVPIL--SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred             cCCceEEEEEeecCceee--cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence            9766 9999999887654  22334567888888777544   4454443       7888877776666655

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.98  E-value=3.7e-10  Score=130.46  Aligned_cols=150  Identities=21%  Similarity=0.346  Sum_probs=122.0

Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC
Q 004217          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t  181 (767)
                      .|.+|...|.|+.|...|.++++|++|..||||..+++.++....||.+.|+.++.+. +..++++++.|..|++|-+.+
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~  263 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPD  263 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCC
Confidence            3679999999999999999999999999999999999999999999999999999988 888999999999999999999


Q ss_pred             CeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEE-ecCCCCeEEEEEccCCCeEEEEEe
Q 004217          182 AECIGS-RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIV-LRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       182 g~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l-~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +.++.. .+|.+.|++++|+|-.   .++.+|.+++||.+-.-.+..+... ......+.++.|..++..+++...
T Consensus       264 ~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~  336 (1113)
T KOG0644|consen  264 GAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR  336 (1113)
T ss_pred             CchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence            999887 4699999999999976   3333455999999832222211111 122456777788777776665443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=1.4e-08  Score=104.35  Aligned_cols=185  Identities=14%  Similarity=0.034  Sum_probs=128.7

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCC--------------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYC--------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS  140 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~--------------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~  140 (767)
                      .+++..+++++.+..+|.|-+..++.-              ..++|.++|+.++|.  ..+|++|+ ||.|+=|..+...
T Consensus        16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~   92 (325)
T KOG0649|consen   16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEE   92 (325)
T ss_pred             HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhh
Confidence            345567788888999999988887541              246899999999998  45677776 4999999765321


Q ss_pred             E------EEEE--ccCC-----CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEE
Q 004217          141 C------LKVL--HGHR-----RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELL  206 (767)
Q Consensus       141 ~------l~~L--~gH~-----~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~L  206 (767)
                      .      +...  .-|.     ..|+++-..| ..+-++.++.|+.+.-||+++|+..+++ +|.+.|.++.--.....+
T Consensus        93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qi  171 (325)
T KOG0649|consen   93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQI  171 (325)
T ss_pred             hhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcce
Confidence            1      1111  1222     3588999999 5555555568999999999999999986 499999999874444566


Q ss_pred             EEEECCc-EEEEEcCCCccccCCe------EEecC-CCCeEEEEEccCCCeEEEEEe----eCCcCCCCcc
Q 004217          207 AVASGHK-LYIWRYNMREETSSPR------IVLRT-RRSLRAVHFHPHAAPLLLTAE----VNDLDSSESS  265 (767)
Q Consensus       207 AsgSdd~-V~VWDl~t~~~~~~~~------~l~~h-~~~VtsVaFSPDG~~LlaSgs----vwdl~s~~~~  265 (767)
                      .+|+.|+ +++||.++.+.+....      .+..| ..+|-+++-  +..+|+.+++    +|.++..++.
T Consensus       172 lsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t  240 (325)
T KOG0649|consen  172 LSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSEST  240 (325)
T ss_pred             eecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCce
Confidence            7777655 9999999998755111      11112 334555554  4556776654    7888766553

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.97  E-value=5.3e-08  Score=108.74  Aligned_cols=175  Identities=18%  Similarity=0.122  Sum_probs=121.9

Q ss_pred             EEEEEcCCCEEEEEeCC---CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEE-eCC--CeEEEEECCCCeEEEE
Q 004217           74 FEAGRDARRGLASWVEA---ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGD--HTVKIIDCQTGSCLKV  144 (767)
Q Consensus        74 ~vA~sd~g~~LaSgs~D---gsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASg-s~D--GtVrVWDl~tg~~l~~  144 (767)
                      ...++.+++.|+....+   ..|.+|++.+++   +..+.+.+.+++|+|||+.|+.. +.+  ..|++||+.+++. ..
T Consensus       194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~  272 (417)
T TIGR02800       194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TR  272 (417)
T ss_pred             cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EE
Confidence            34466777777766543   479999998763   44566677889999999987654 434  3589999988764 44


Q ss_pred             EccCCCCcEEEEEccCCCcEEEEEeC-CC--eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC----cEEEE
Q 004217          145 LHGHRRTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIW  217 (767)
Q Consensus       145 L~gH~~~V~sLafsP~dg~lLaSgS~-DG--tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd----~V~VW  217 (767)
                      +..+........|+| +++.|+..+. ++  .|.+||+.+++..........+..+.|+|+|++|+.++.+    .|.+|
T Consensus       273 l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~  351 (417)
T TIGR02800       273 LTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVM  351 (417)
T ss_pred             CCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence            445555556789999 7777665554 33  5888888877765554455667788999999998888743    38999


Q ss_pred             EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       218 Dl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      |+.++...    .+.. ........|+|||++|+.+..
T Consensus       352 d~~~~~~~----~l~~-~~~~~~p~~spdg~~l~~~~~  384 (417)
T TIGR02800       352 DLDGGGER----VLTD-TGLDESPSFAPNGRMILYATT  384 (417)
T ss_pred             eCCCCCeE----EccC-CCCCCCceECCCCCEEEEEEe
Confidence            98875431    2222 223456789999998877665

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.97  E-value=5.2e-09  Score=117.39  Aligned_cols=154  Identities=16%  Similarity=0.157  Sum_probs=126.7

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCC--------------CCCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEEC
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKY--------------CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC  136 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t--------------~~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl  136 (767)
                      .+++++...++..+++|+-||+|+.|++..              +.+.||++.|+.+++|.....|++|+.||+|++|+.
T Consensus       346 PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~  425 (577)
T KOG0642|consen  346 PVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEP  425 (577)
T ss_pred             ceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeecc
Confidence            478888999999999999999999995531              257899999999999999999999999999999987


Q ss_pred             CCCeE--------------------------------------------EEEEc-------cCCCCcEEEEEccCCCcEE
Q 004217          137 QTGSC--------------------------------------------LKVLH-------GHRRTPWVVRFHPLNPTII  165 (767)
Q Consensus       137 ~tg~~--------------------------------------------l~~L~-------gH~~~V~sLafsP~dg~lL  165 (767)
                      .....                                            +..+.       .....+..+.++| +..+.
T Consensus       426 ~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~  504 (577)
T KOG0642|consen  426 TEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADIT  504 (577)
T ss_pred             CCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCee
Confidence            43322                                            00000       0123466788899 78999


Q ss_pred             EEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccc
Q 004217          166 ASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET  225 (767)
Q Consensus       166 aSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~  225 (767)
                      +++..|+.|+++|..+++.+.. ..|...++++++.|+|-+|++++.++ +++|.+......
T Consensus       505 ~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  505 FTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV  566 (577)
T ss_pred             EecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence            9999999999999999999887 45889999999999999999999666 999988765543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.92  E-value=7.7e-09  Score=122.60  Aligned_cols=146  Identities=20%  Similarity=0.229  Sum_probs=122.7

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE-EEccCC
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-VLHGHR  149 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~-~L~gH~  149 (767)
                      ...+.+.-++++|+.-+.|.+|+....    .+.+|.+.|.++.|+.||+++++.++|.++|+|++++.+... ...+|+
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs  218 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS  218 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence            334456677889999999999998743    378999999999999999999999999999999999988765 667899


Q ss_pred             CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC-CCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCc
Q 004217          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-YRPIASIAFHASGELLAVASGHK-LYIWRYNMRE  223 (767)
Q Consensus       150 ~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h-~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~  223 (767)
                      ..|+.+.|+| +  .+++++.|.+.++|+....+.....+| .+.+..++.+++...++++++|+ +++||+....
T Consensus       219 aRvw~~~~~~-n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  219 ARVWACCFLP-N--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             ceeEEEEecc-c--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence            9999999999 4  999999999999997765544433334 46789999999988899988766 9999987543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.92  E-value=1.5e-07  Score=106.36  Aligned_cols=176  Identities=11%  Similarity=0.014  Sum_probs=118.2

Q ss_pred             EEEEEEcCCCEEEEEeCC---CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEE-EeCCC--eEEEEECCCCeEEE
Q 004217           73 IFEAGRDARRGLASWVEA---ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAS-THGDH--TVKIIDCQTGSCLK  143 (767)
Q Consensus        73 ~~vA~sd~g~~LaSgs~D---gsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LAS-gs~DG--tVrVWDl~tg~~l~  143 (767)
                      ....++.+++.|+..+.+   ..|.+|++.+++   +....+.+...+|||||+.|+. ...++  .|++||+++++. .
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~  280 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-S  280 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-E
Confidence            445566778877765533   358889998763   3344455667999999998874 44444  688889988764 4


Q ss_pred             EEccCCCCcEEEEEccCCCcEEEEEe-CCC--eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC-C---cEEE
Q 004217          144 VLHGHRRTPWVVRFHPLNPTIIASGS-LDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-H---KLYI  216 (767)
Q Consensus       144 ~L~gH~~~V~sLafsP~dg~lLaSgS-~DG--tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd-d---~V~V  216 (767)
                      .+..+........|+| +++.++..+ .++  .|.++|+.+++...............|+|+|++|+..+. +   .|.+
T Consensus       281 ~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~  359 (430)
T PRK00178        281 RVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAA  359 (430)
T ss_pred             EcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEE
Confidence            4555666677789999 666655544 333  577778888775444322333456789999999887763 2   2889


Q ss_pred             EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       217 WDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ||+.+++...    +. .........|+|||+.++.+..
T Consensus       360 ~dl~tg~~~~----lt-~~~~~~~p~~spdg~~i~~~~~  393 (430)
T PRK00178        360 QDLQRGSVRI----LT-DTSLDESPSVAPNGTMLIYATR  393 (430)
T ss_pred             EECCCCCEEE----cc-CCCCCCCceECCCCCEEEEEEe
Confidence            9998775422    21 1222335689999998887764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.92  E-value=1.3e-07  Score=107.48  Aligned_cols=159  Identities=16%  Similarity=0.157  Sum_probs=102.6

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeC-----CCeEEEEECCCC---eEEEEEccCCCCcEEEEEccC
Q 004217           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG-----DHTVKIIDCQTG---SCLKVLHGHRRTPWVVRFHPL  160 (767)
Q Consensus        92 sIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~-----DGtVrVWDl~tg---~~l~~L~gH~~~V~sLafsP~  160 (767)
                      .|.+.++..+   ++....+.....+|||||+.|+..+.     |..+.+||+.++   +......++.......+|+| 
T Consensus       212 ~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-  290 (428)
T PRK01029        212 KIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-  290 (428)
T ss_pred             eEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-
Confidence            4666677655   34445556677999999999887653     333455777653   33333333334456789999 


Q ss_pred             CCcEEEEEe-CCCeEEEEE--CCC-CeEEEee-cCCCCeEEEEEcCCCCEEEEEECC----cEEEEEcCCCccccCCeEE
Q 004217          161 NPTIIASGS-LDHEVRLWN--AST-AECIGSR-DFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIV  231 (767)
Q Consensus       161 dg~lLaSgS-~DGtVrIWD--l~t-g~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd----~V~VWDl~t~~~~~~~~~l  231 (767)
                      |++.|+..+ .++...||.  +.. +.....+ .....+....|+|||++|+..+..    .|++||+.+++...    +
T Consensus       291 DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~----L  366 (428)
T PRK01029        291 DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ----L  366 (428)
T ss_pred             CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE----c
Confidence            777666554 567655654  432 2222323 334566789999999988877632    29999998886533    3


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe
Q 004217          232 LRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       232 ~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ......+....|+|||+.|+.++.
T Consensus       367 t~~~~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        367 TTSPENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             cCCCCCccceEECCCCCEEEEEEC
Confidence            333345678999999998887654

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.90  E-value=5.4e-08  Score=110.00  Aligned_cols=171  Identities=15%  Similarity=0.061  Sum_probs=142.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCC-------CCCCCeEEEEEC--------------------CCCCeEEEEeCCCeEE
Q 004217           80 ARRGLASWVEAESLHHLRPKYCPLS-------PPPRSTIAAAFS--------------------PDGKTLASTHGDHTVK  132 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~~L~-------gH~~sVtsVaFS--------------------pDG~~LASgs~DGtVr  132 (767)
                      ...+++....||.+++|+...+++.       .-.+..++..|.                    .|-..|+-|...|.|.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            4567778889999999999877432       234455566553                    2334677788899999


Q ss_pred             EEECCCCeEEEEEc--cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEE
Q 004217          133 IIDCQTGSCLKVLH--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVA  209 (767)
Q Consensus       133 VWDl~tg~~l~~L~--gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsg  209 (767)
                      +|++..|+....+.  .|.+.|.++.|+. +-..|.|++.|+.+..|+....+.++.+. ....+.+++.+|||..++++
T Consensus        84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a  162 (541)
T KOG4547|consen   84 LYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA  162 (541)
T ss_pred             EEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence            99999999887775  6899999999998 88999999999999999999999998865 56678999999999999887


Q ss_pred             ECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccC-----CCeEEEEEe
Q 004217          210 SGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH-----AAPLLLTAE  255 (767)
Q Consensus       210 Sdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPD-----G~~LlaSgs  255 (767)
                      + +.|++||+++.+.+.   .+.+|.+.|++++|--+     |.+++++..
T Consensus       163 s-~~ik~~~~~~kevv~---~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~  209 (541)
T KOG4547|consen  163 S-RQIKVLDIETKEVVI---TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA  209 (541)
T ss_pred             c-ceEEEEEccCceEEE---EecCCCcceEEEEEEEeccccccceeeeccc
Confidence            5 669999999999766   89999999999999987     888887655

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.90  E-value=3.5e-07  Score=103.97  Aligned_cols=225  Identities=13%  Similarity=0.164  Sum_probs=130.7

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEE---EEeCC--CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCc
Q 004217           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLA---STHGD--HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT  163 (767)
Q Consensus        92 sIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LA---Sgs~D--GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~  163 (767)
                      .|.+.|.+..   ++......+..-+|||||+.++   +...+  ..|.+.++.+++.. .+....+.....+|+| |++
T Consensus       166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSP-DG~  243 (428)
T PRK01029        166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSP-RKK  243 (428)
T ss_pred             eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECC-CCC
Confidence            4555565543   3555666778899999998632   33333  35888899877643 3333444556789999 776


Q ss_pred             EEEEEeC-----CCeEEEEECCCC---eEEEeecC-CCCeEEEEEcCCCCEEEEEEC--Cc--EEEEEcCCCccccCCeE
Q 004217          164 IIASGSL-----DHEVRLWNASTA---ECIGSRDF-YRPIASIAFHASGELLAVASG--HK--LYIWRYNMREETSSPRI  230 (767)
Q Consensus       164 lLaSgS~-----DGtVrIWDl~tg---~~i~~l~h-~~~VtsVafSPdG~~LAsgSd--d~--V~VWDl~t~~~~~~~~~  230 (767)
                      .|+..+.     |-.+.+||+..+   +....... .......+|+|||+.|+..++  +.  |+++++.....  ....
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~--~~~~  321 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ--SPRL  321 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc--ceEE
Confidence            6665442     334555777653   33333332 234467899999998887774  33  55555543211  1123


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeE
Q 004217          231 VLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPS  310 (767)
Q Consensus       231 l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~ps  310 (767)
                      +..+...+....|||||++|+.+.....               .     ..+.+++...+....+..+    ......+.
T Consensus       322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g---------------~-----~~I~v~dl~~g~~~~Lt~~----~~~~~~p~  377 (428)
T PRK01029        322 LTKKYRNSSCPAWSPDGKKIAFCSVIKG---------------V-----RQICVYDLATGRDYQLTTS----PENKESPS  377 (428)
T ss_pred             eccCCCCccceeECCCCCEEEEEEcCCC---------------C-----cEEEEEECCCCCeEEccCC----CCCccceE
Confidence            4444556788999999998887653210               0     1244444433333222222    11223588


Q ss_pred             EecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217          311 FVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       311 FSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                      |+|||+.|+......              ....+..+|..+++...+.
T Consensus       378 wSpDG~~L~f~~~~~--------------g~~~L~~vdl~~g~~~~Lt  411 (428)
T PRK01029        378 WAIDSLHLVYSAGNS--------------NESELYLISLITKKTRKIV  411 (428)
T ss_pred             ECCCCCEEEEEECCC--------------CCceEEEEECCCCCEEEee
Confidence            999999998733211              1235677777777665554

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.88  E-value=1.5e-07  Score=109.14  Aligned_cols=186  Identities=12%  Similarity=0.048  Sum_probs=135.0

Q ss_pred             eEEEEEE-cCCCEEEEEeCCCeEEEEeCCCCC----------CCCCCCCeEEEEECCCCC--eEEEEeCCCeEEEEECCC
Q 004217           72 QIFEAGR-DARRGLASWVEAESLHHLRPKYCP----------LSPPPRSTIAAAFSPDGK--TLASTHGDHTVKIIDCQT  138 (767)
Q Consensus        72 ~~~vA~s-d~g~~LaSgs~DgsIrlWd~~t~~----------L~gH~~sVtsVaFSpDG~--~LASgs~DGtVrVWDl~t  138 (767)
                      ..++.+. .+...++.|..+|.|.+||.....          ...|..+|+.+.|-.+..  -|++++.||.|..|+++.
T Consensus       245 v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~  324 (555)
T KOG1587|consen  245 VTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDM  324 (555)
T ss_pred             eeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccc
Confidence            4445544 467889999999999999998653          237899999999987544  499999999999998864


Q ss_pred             CeE------EEEEc------cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEE---CCCCe-E----E-EeecCCCCeEEE
Q 004217          139 GSC------LKVLH------GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN---ASTAE-C----I-GSRDFYRPIASI  197 (767)
Q Consensus       139 g~~------l~~L~------gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWD---l~tg~-~----i-~~l~h~~~VtsV  197 (767)
                      -..      .....      .-...+++++|.+.+.+.|+.|+.+|.|.--+   .+... .    . ....|.+.|+++
T Consensus       325 l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v  404 (555)
T KOG1587|consen  325 LSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAV  404 (555)
T ss_pred             cccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEee
Confidence            322      11111      12246889999998999999999999987733   33322 1    1 113488999999


Q ss_pred             EEcCCCC-EEEEEECCcEEEEEcC-CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcC
Q 004217          198 AFHASGE-LLAVASGHKLYIWRYN-MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLD  260 (767)
Q Consensus       198 afSPdG~-~LAsgSdd~V~VWDl~-t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~  260 (767)
                      .++|=+. ++.+++|.+++||... ....   ...+..+...|++++|||.-..++++..      +||+.
T Consensus       405 ~~nPF~~k~fls~gDW~vriWs~~~~~~P---l~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl  472 (555)
T KOG1587|consen  405 SRNPFYPKNFLSVGDWTVRIWSEDVIASP---LLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL  472 (555)
T ss_pred             ecCCCccceeeeeccceeEeccccCCCCc---chhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence            9999886 5555567779999876 3332   2345566777999999999887777765      56555

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.86  E-value=3.8e-08  Score=116.63  Aligned_cols=179  Identities=15%  Similarity=0.164  Sum_probs=128.9

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCC---eEEEEE
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG---SCLKVL  145 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~~-----L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg---~~l~~L  145 (767)
                      +.+....+.|.+.++-..|++||++..+     -.+-...|+++.-+. .|+.|+.|..||.|++||.+..   ..+...
T Consensus      1171 ~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~ 1250 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY 1250 (1387)
T ss_pred             eehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee
Confidence            3333444555555568889999998763     224455677777665 5799999999999999998753   356778


Q ss_pred             ccCCCC--cEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee------cCCCCeEEEEEcCCCCEEEEEECCcEEEE
Q 004217          146 HGHRRT--PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR------DFYRPIASIAFHASGELLAVASGHKLYIW  217 (767)
Q Consensus       146 ~gH~~~--V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l------~h~~~VtsVafSPdG~~LAsgSdd~V~VW  217 (767)
                      +.|.+.  |..+.+.+.+-..|++|+.||.|++||++.......+      +..+..+++..|++...+|+|+...|+||
T Consensus      1251 R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy 1330 (1387)
T KOG1517|consen 1251 REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIY 1330 (1387)
T ss_pred             cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEE
Confidence            889887  9999999845557999999999999999975222221      12346999999999999999999669999


Q ss_pred             EcCCCcccc---CCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217          218 RYNMREETS---SPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       218 Dl~t~~~~~---~~~~l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      ++.......   ....+......+.+++|||.--.++++
T Consensus      1331 ~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1331 SLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred             ecChhhhcccccCcccccCcCCCcceeeecchhHhhhhc
Confidence            987654321   011122234578999999987644433

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.86  E-value=2e-07  Score=109.28  Aligned_cols=184  Identities=14%  Similarity=0.055  Sum_probs=141.4

Q ss_pred             CCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCC--C------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC
Q 004217           68 GSFSQIFEAGRDARRGLASWVEAESLHHLRPKY--C------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG  139 (767)
Q Consensus        68 ~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t--~------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg  139 (767)
                      ..+...+++.+..+..++++..||+|.+|.-..  .      .+.=|...|.+++|++||.+|++|+..+.+-+|.++++
T Consensus       204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~  283 (792)
T KOG1963|consen  204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG  283 (792)
T ss_pred             hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence            345578899999999999999999999998655  1      25578999999999999999999999999999999998


Q ss_pred             eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec------------CCCCeEEEEEcCCCCEEE
Q 004217          140 SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD------------FYRPIASIAFHASGELLA  207 (767)
Q Consensus       140 ~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~------------h~~~VtsVafSPdG~~LA  207 (767)
                      + .+-|..-.+.|..+.++| ++++.+....|+.|.+-...+.+....+.            ..+-.+.++++|.-+.++
T Consensus       284 ~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v  361 (792)
T KOG1963|consen  284 K-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV  361 (792)
T ss_pred             C-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence            8 445566778999999999 89999999999999999886655444332            133456788999544444


Q ss_pred             EEE-CCcEEEEEcCCCccccCCeEEec--------CCCCeEEEEEccCCCeEEEE
Q 004217          208 VAS-GHKLYIWRYNMREETSSPRIVLR--------TRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       208 sgS-dd~V~VWDl~t~~~~~~~~~l~~--------h~~~VtsVaFSPDG~~LlaS  253 (767)
                      ..+ .+.|.+||+-+...+........        +...+++++++-.|.++++.
T Consensus       362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~  416 (792)
T KOG1963|consen  362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATL  416 (792)
T ss_pred             ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEe
Confidence            444 55699999988776542222211        23357888889898866553

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.85  E-value=1.2e-08  Score=105.80  Aligned_cols=138  Identities=18%  Similarity=0.230  Sum_probs=113.6

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC--------------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC--CeEE--
Q 004217           81 RRGLASWVEAESLHHLRPKYC--------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT--GSCL--  142 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t~--------------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t--g~~l--  142 (767)
                      .-.++.|-++|.+.+||..++              ....|..+|.++.|.+.-..=++|+-+..+..|.++.  +.+.  
T Consensus       165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~  244 (323)
T KOG0322|consen  165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR  244 (323)
T ss_pred             eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence            345678889999999999885              2447999999999998655667888888899998864  3321  


Q ss_pred             EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEc
Q 004217          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRY  219 (767)
Q Consensus       143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl  219 (767)
                      ..++-....|..+..-| |++++++++.|+.||+|..++.+.+..+. |...|++++|+|+..++|.++.|. |.+|++
T Consensus       245 ~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  245 KEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            22222345688899999 99999999999999999999999999876 889999999999999999999666 999986

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.84  E-value=4.4e-07  Score=103.70  Aligned_cols=175  Identities=16%  Similarity=0.088  Sum_probs=113.0

Q ss_pred             EEEEEcCCCEEEEEeC-CC--eEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEE-EeCCCe--EEEEECCCCeEEEE
Q 004217           74 FEAGRDARRGLASWVE-AE--SLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAS-THGDHT--VKIIDCQTGSCLKV  144 (767)
Q Consensus        74 ~vA~sd~g~~LaSgs~-Dg--sIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LAS-gs~DGt--VrVWDl~tg~~l~~  144 (767)
                      ...++.+++.|+..+. ++  .|.+||+.+++   +....+.....+|+|||+.|+. ...++.  |++||+++++. ..
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~  300 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TR  300 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EE
Confidence            3456667777765543 22  58888887663   3333344567899999998875 455564  88889887764 44


Q ss_pred             EccCCCCcEEEEEccCCCcEEEEEe-CCC--eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC--Cc--EEEE
Q 004217          145 LHGHRRTPWVVRFHPLNPTIIASGS-LDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HK--LYIW  217 (767)
Q Consensus       145 L~gH~~~V~sLafsP~dg~lLaSgS-~DG--tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd--d~--V~VW  217 (767)
                      +..+........|+| +++.++..+ .++  .|.++|+.+++..............+|+|||++|+..+.  +.  |.++
T Consensus       301 lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~  379 (448)
T PRK04792        301 ITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQ  379 (448)
T ss_pred             CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEE
Confidence            555656677889999 777665544 344  466678877775544323333445789999998887763  22  6777


Q ss_pred             EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       218 Dl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      |+.+++...    +... .......|+|||+.|+.+..
T Consensus       380 dl~~g~~~~----lt~~-~~d~~ps~spdG~~I~~~~~  412 (448)
T PRK04792        380 DLETGAMQV----LTST-RLDESPSVAPNGTMVIYSTT  412 (448)
T ss_pred             ECCCCCeEE----ccCC-CCCCCceECCCCCEEEEEEe
Confidence            887765322    2221 12235589999998877664

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.83  E-value=1.5e-07  Score=111.71  Aligned_cols=203  Identities=15%  Similarity=0.181  Sum_probs=136.2

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----------------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIID  135 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----------------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWD  135 (767)
                      ...+....+...+.+++.||.||+|+--..                .+.+-.+.=.-++|.....+|++++.-..|+|||
T Consensus      1114 ~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWD 1193 (1387)
T KOG1517|consen 1114 DLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWD 1193 (1387)
T ss_pred             eeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEe
Confidence            344445567778999999999999985321                1222223335678888555666666678999999


Q ss_pred             CCCCeEEEEEc-cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE---EEe-ecCCCC--eEEEEEcCCCC-EEE
Q 004217          136 CQTGSCLKVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---IGS-RDFYRP--IASIAFHASGE-LLA  207 (767)
Q Consensus       136 l~tg~~l~~L~-gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~---i~~-l~h~~~--VtsVafSPdG~-~LA  207 (767)
                      .+...+...+. +....|+++.-+-.+++.++.|..||.|++||.+....   +.. ..|...  |..+.+-++|- .|+
T Consensus      1194 a~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elv 1273 (1387)
T KOG1517|consen 1194 AHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELV 1273 (1387)
T ss_pred             cccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCccee
Confidence            99887776663 34456777776655789999999999999999986443   222 346665  99999998875 488


Q ss_pred             EEECCc-EEEEEcCCCccccCCeEEecC---CCCeEEEEEccCCCeEEEEEe----eCCcCCCCcceeEeecCCCcc
Q 004217          208 VASGHK-LYIWRYNMREETSSPRIVLRT---RRSLRAVHFHPHAAPLLLTAE----VNDLDSSESSLTLATSPGYWR  276 (767)
Q Consensus       208 sgSdd~-V~VWDl~t~~~~~~~~~l~~h---~~~VtsVaFSPDG~~LlaSgs----vwdl~s~~~~~~l~t~sG~~~  276 (767)
                      +|+.++ |++||++...... ......|   .+.++++..|++...+++++.    +|++. ++....+....++..
T Consensus      1274 Sgs~~G~I~~~DlR~~~~e~-~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~l~~~k~n~~F~~ 1348 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRMSSKET-FLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQLNIIKYNPGFMG 1348 (1387)
T ss_pred             eeccCCeEEEEecccCcccc-cceeeeccccCccceeeeeccCCCeeeecCcceEEEEecC-hhhhcccccCccccc
Confidence            888555 9999999853322 2233333   235999999999985444432    66665 333333333344433

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.82  E-value=2.7e-07  Score=98.15  Aligned_cols=170  Identities=17%  Similarity=0.204  Sum_probs=122.7

Q ss_pred             CcceeecccccceecC--CcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCCCCeEE
Q 004217           53 HSSKRLLGETARKCSG--SFSQIFEAGRDARRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPDGKTLA  123 (767)
Q Consensus        53 ~~sk~~wd~~~~~~~~--s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~-------L~gH~~sVtsVaFSpDG~~LA  123 (767)
                      .....+||.....+..  ++.....++.-.+.+|+... +++|.+|......       ....+..+.+++-..+..+||
T Consensus        74 pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~La  152 (346)
T KOG2111|consen   74 PNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLA  152 (346)
T ss_pred             CceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEE
Confidence            3456678865444432  23333333444556666553 6789999887441       112233355555444555555


Q ss_pred             EE-eCCCeEEEEECCCCeE--EEEEccCCCCcEEEEEccCCCcEEEEEeCCCe-EEEEECCCCeEEEeec---CCCCeEE
Q 004217          124 ST-HGDHTVKIIDCQTGSC--LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE-VRLWNASTAECIGSRD---FYRPIAS  196 (767)
Q Consensus       124 Sg-s~DGtVrVWDl~tg~~--l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGt-VrIWDl~tg~~i~~l~---h~~~Vts  196 (767)
                      .= -.-|.|+|-|+...+.  ...+..|...|.+++.+- ++.++||+|..|+ |||||..+|+.+.++.   ....|.+
T Consensus       153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~  231 (346)
T KOG2111|consen  153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYC  231 (346)
T ss_pred             cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence            53 3468999999987654  467889999999999999 9999999999998 8999999999999875   4567999


Q ss_pred             EEEcCCCCEEEEEECCc-EEEEEcCCCcc
Q 004217          197 IAFHASGELLAVASGHK-LYIWRYNMREE  224 (767)
Q Consensus       197 VafSPdG~~LAsgSdd~-V~VWDl~t~~~  224 (767)
                      ++|+|+..+||++|+.+ |+||.++....
T Consensus       232 iaFSp~~s~LavsSdKgTlHiF~l~~~~~  260 (346)
T KOG2111|consen  232 IAFSPNSSWLAVSSDKGTLHIFSLRDTEN  260 (346)
T ss_pred             EEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence            99999999999999866 99999886543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=1.9e-08  Score=113.42  Aligned_cols=188  Identities=15%  Similarity=0.139  Sum_probs=147.1

Q ss_pred             cceEEEEEEcCCCEEEEEeCC---CeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE
Q 004217           70 FSQIFEAGRDARRGLASWVEA---ESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL  142 (767)
Q Consensus        70 ~s~~~vA~sd~g~~LaSgs~D---gsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l  142 (767)
                      .....+.+...|.+|++...+   ..|.+.++...    .|....+.|.++.|+|...+|+.++. ..|+|||+.....+
T Consensus       522 k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelv  600 (733)
T KOG0650|consen  522 KSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELV  600 (733)
T ss_pred             CccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHH
Confidence            345566777889999987654   45778887654    45566788999999998888888776 58999999988777


Q ss_pred             EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC-eEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEE-
Q 004217          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWR-  218 (767)
Q Consensus       143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg-~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWD-  218 (767)
                      +.+..-...|..++.|| +++-|+.|+.|+.+..+|+.-. +..+.+. |...+++|+||+.-.++++|++|+ +.|+. 
T Consensus       601 KkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  601 KKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG  679 (733)
T ss_pred             HHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence            77776777899999999 8888999999999999999754 4455544 888999999999999999999876 77664 


Q ss_pred             -----cCCCccccCCeEEecCCCC----eEEEEEccCCCeEEEEEeeCCc
Q 004217          219 -----YNMREETSSPRIVLRTRRS----LRAVHFHPHAAPLLLTAEVNDL  259 (767)
Q Consensus       219 -----l~t~~~~~~~~~l~~h~~~----VtsVaFSPDG~~LlaSgsvwdl  259 (767)
                           +...-.+.+...+.+|...    |..+.|||...+|++++....+
T Consensus       680 ~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~ti  729 (733)
T KOG0650|consen  680 MVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTI  729 (733)
T ss_pred             eeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceE
Confidence                 2233334445667788554    8899999999999888764443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.78  E-value=2.9e-08  Score=103.06  Aligned_cols=146  Identities=14%  Similarity=0.183  Sum_probs=111.4

Q ss_pred             CCCCeEEEEECC-CCC--eEEEEeCCCeEEEEECCCCeE----------EEEEccCCCCcEEEEEccCCCcEEEEEeCCC
Q 004217          106 PPRSTIAAAFSP-DGK--TLASTHGDHTVKIIDCQTGSC----------LKVLHGHRRTPWVVRFHPLNPTIIASGSLDH  172 (767)
Q Consensus       106 H~~sVtsVaFSp-DG~--~LASgs~DGtVrVWDl~tg~~----------l~~L~gH~~~V~sLafsP~dg~lLaSgS~DG  172 (767)
                      ..+.+.|..+.. +++  +|+.|-.+|.|.+||+.++..          ......|..+|.++.|.+ ..+.=++|+.+.
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~d  227 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADD  227 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccc
Confidence            445677777554 444  457778899999999998733          334457999999999988 666677888888


Q ss_pred             eEEEEECCCC--eEEEe--ec-CCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccC
Q 004217          173 EVRLWNASTA--ECIGS--RD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH  246 (767)
Q Consensus       173 tVrIWDl~tg--~~i~~--l~-h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPD  246 (767)
                      .+..|.+...  .+...  +. .+-.|..+.+-||++.+|+++. ++|+||..++...+.   .+.-|...|++++|+||
T Consensus       228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA---VLkyHsagvn~vAfspd  304 (323)
T KOG0322|consen  228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA---VLKYHSAGVNAVAFSPD  304 (323)
T ss_pred             cceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh---hhhhhhcceeEEEeCCC
Confidence            9999988743  33221  22 2345778899999999999995 459999999998655   77889999999999999


Q ss_pred             CCeEEEEEe
Q 004217          247 AAPLLLTAE  255 (767)
Q Consensus       247 G~~LlaSgs  255 (767)
                      ...++++++
T Consensus       305 ~~lmAaask  313 (323)
T KOG0322|consen  305 CELMAAASK  313 (323)
T ss_pred             CchhhhccC
Confidence            886666654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.77  E-value=1.1e-06  Score=103.24  Aligned_cols=177  Identities=12%  Similarity=0.117  Sum_probs=124.4

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCC---CeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDG---KTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG---~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ..++++.+.++.. .+..|++|...++    .+.+|..+++.+.+.|..   .++.+++.||.|++||...+..++++..
T Consensus        22 avfSnD~k~l~~~-~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~  100 (792)
T KOG1963|consen   22 AVFSNDAKFLFLC-TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN  100 (792)
T ss_pred             cccccCCcEEEEe-eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence            4455677777655 4778999999887    478999999999999843   4678999999999999988877766642


Q ss_pred             CCCCcE-----------------------------------------------------------EEEEccCCCcEEEEE
Q 004217          148 HRRTPW-----------------------------------------------------------VVRFHPLNPTIIASG  168 (767)
Q Consensus       148 H~~~V~-----------------------------------------------------------sLafsP~dg~lLaSg  168 (767)
                      +.. +.                                                           .+.+++ .+. +...
T Consensus       101 ~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~-~ge-~~~i  177 (792)
T KOG1963|consen  101 NLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN-SGE-FKGI  177 (792)
T ss_pred             CCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC-Cce-EEEE
Confidence            211 11                                                           122222 111 2222


Q ss_pred             eCCCeEEEEECCCCeEEEe-----ecCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCC-CccccCCeEEecCCCCeEEE
Q 004217          169 SLDHEVRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNM-REETSSPRIVLRTRRSLRAV  241 (767)
Q Consensus       169 S~DGtVrIWDl~tg~~i~~-----l~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t-~~~~~~~~~l~~h~~~VtsV  241 (767)
                      -.+..+.+|+..++.....     ..|...+++.++||+++++|++.. |+|.+|.--. .......+.+..|...|.++
T Consensus       178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L  257 (792)
T KOG1963|consen  178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL  257 (792)
T ss_pred             EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccccee
Confidence            3345677787776441111     235666899999999999999985 4599995433 23333466788899999999


Q ss_pred             EEccCCCeEEEEEe
Q 004217          242 HFHPHAAPLLLTAE  255 (767)
Q Consensus       242 aFSPDG~~LlaSgs  255 (767)
                      +|++||.+|+++|.
T Consensus       258 ~fS~~G~~LlSGG~  271 (792)
T KOG1963|consen  258 SFSSDGAYLLSGGR  271 (792)
T ss_pred             EEecCCceEeeccc
Confidence            99999999988875

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.76  E-value=2.5e-08  Score=109.84  Aligned_cols=175  Identities=16%  Similarity=0.141  Sum_probs=141.5

Q ss_pred             CcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCC--------------------------------C----------C
Q 004217           69 SFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLS--------------------------------P----------P  106 (767)
Q Consensus        69 s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~--------------------------------g----------H  106 (767)
                      .|.+.-+-...+|+.|+-+...|-|-.+|..+..|.                                +          .
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~  208 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKR  208 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhh
Confidence            344666777788888888888888877776654211                                1          1


Q ss_pred             CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEE
Q 004217          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG  186 (767)
Q Consensus       107 ~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~  186 (767)
                      ...|..+.|-|.--+|++++..|.++--|+.+|+.+..+..-.+.+..++-+| -+..+-.|...|+|.+|.-...+++.
T Consensus       209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePLv  287 (545)
T KOG1272|consen  209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPLV  287 (545)
T ss_pred             cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcchHH
Confidence            23577788888888899999999999999999999998888888899999999 77889999999999999998877765


Q ss_pred             e-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCC
Q 004217          187 S-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA  248 (767)
Q Consensus       187 ~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~  248 (767)
                      . +.|.++|.+|+++++|+|+|+++-|+ ++|||+++...+.   .... ......++||..|-
T Consensus       288 KiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~---t~~t-p~~a~~ls~Sqkgl  347 (545)
T KOG1272|consen  288 KILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH---TYRT-PHPASNLSLSQKGL  347 (545)
T ss_pred             HHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc---eeec-CCCccccccccccc
Confidence            4 67999999999999999999999655 9999999887544   2222 45677889998776

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.76  E-value=3e-06  Score=96.22  Aligned_cols=188  Identities=11%  Similarity=0.106  Sum_probs=117.4

Q ss_pred             CeEEEEECCCCCe-EEEEeCC---CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCc-EEEEEeCC--CeEEEEECCC
Q 004217          109 STIAAAFSPDGKT-LASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT-IIASGSLD--HEVRLWNAST  181 (767)
Q Consensus       109 sVtsVaFSpDG~~-LASgs~D---GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~-lLaSgS~D--GtVrIWDl~t  181 (767)
                      .+....|||||+. ++..+.+   ..|.++|+.+++..... ...+......|+| |++ ++++.+.+  ..|.++|+.+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence            6789999999985 6654443   56999999988754433 3455566788999 665 44455444  4678889888


Q ss_pred             CeEEEeecCCCCeEEEEEcCCCCEEEEEECC----cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 004217          182 AECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN  257 (767)
Q Consensus       182 g~~i~~l~h~~~VtsVafSPdG~~LAsgSdd----~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvw  257 (767)
                      ++...............|+|||+.|+..++.    .|+++|+.+++..+   .... ..  ....|||||++|+.+....
T Consensus       267 g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r---lt~~-g~--~~~~~SPDG~~Ia~~~~~~  340 (419)
T PRK04043        267 KTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ---VVFH-GK--NNSSVSTYKNYIVYSSRET  340 (419)
T ss_pred             CcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe---CccC-CC--cCceECCCCCEEEEEEcCC
Confidence            8755544444334456899999988888753    29999998776533   1111 11  1248999999998877422


Q ss_pred             CcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeec
Q 004217          258 DLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT  323 (767)
Q Consensus       258 dl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~  323 (767)
                      +-.             +.. ....+++.+...+....|..+.     ....|.|+|||+.|+....
T Consensus       341 ~~~-------------~~~-~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        341 NNE-------------FGK-NTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             Ccc-------------cCC-CCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEc
Confidence            111             000 0123444444444333332221     1225999999999998543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.74  E-value=2.3e-08  Score=110.11  Aligned_cols=168  Identities=17%  Similarity=0.197  Sum_probs=136.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEE
Q 004217           79 DARRGLASWVEAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~~L----~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~s  154 (767)
                      ..--.|+++++.|-++.-|+.++++    ..-.+.+..++-+|-...+-.|...|+|.+|.....+++..+..|.++|.+
T Consensus       219 PyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~s  298 (545)
T KOG1272|consen  219 PYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSS  298 (545)
T ss_pred             chhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcce
Confidence            3445688889999999999999854    355678999999998889999999999999999999988888899999999


Q ss_pred             EEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEE-cCCCc-cccCCeEEe
Q 004217          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWR-YNMRE-ETSSPRIVL  232 (767)
Q Consensus       155 LafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWD-l~t~~-~~~~~~~l~  232 (767)
                      |++.+ +++++++.+.|..++|||++....+.++........++||..| +||.+.++.|.||. .-.+. ...  ....
T Consensus       299 iAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~--~pYm  374 (545)
T KOG1272|consen  299 IAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGE--TPYM  374 (545)
T ss_pred             EEECC-CCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeecCCeeeeehhhhcCCCCCC--cchh
Confidence            99999 9999999999999999999998877776656677888888665 67777777899994 32221 111  1223


Q ss_pred             cC--CCCeEEEEEccCCCeE
Q 004217          233 RT--RRSLRAVHFHPHAAPL  250 (767)
Q Consensus       233 ~h--~~~VtsVaFSPDG~~L  250 (767)
                      .|  ...|..+.|.|-...|
T Consensus       375 ~H~~~~~V~~l~FcP~EDvL  394 (545)
T KOG1272|consen  375 NHRCGGPVEDLRFCPYEDVL  394 (545)
T ss_pred             hhccCcccccceeccHHHee
Confidence            33  5689999999987733

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.71  E-value=6.1e-07  Score=95.49  Aligned_cols=162  Identities=14%  Similarity=0.134  Sum_probs=112.7

Q ss_pred             CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECC-CCeEEEEEccCCCCcEEEEEccCCC-cE
Q 004217           90 AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ-TGSCLKVLHGHRRTPWVVRFHPLNP-TI  164 (767)
Q Consensus        90 DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~-tg~~l~~L~gH~~~V~sLafsP~dg-~l  164 (767)
                      -+++.+||-....   -..-..+|.+|.+++|  +|++.- .+.|+||... +.+.++.+..-..+=--++..|..+ .+
T Consensus        74 pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   74 PNKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             CceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            4568888843331   1245677999999865  555544 5699999987 4555666543221111233444223 33


Q ss_pred             EEE-EeCCCeEEEEECCCCeE---EEeecCCCCeEEEEEcCCCCEEEEEECCc--EEEEEcCCCccccCCeEEecCCCCe
Q 004217          165 IAS-GSLDHEVRLWNASTAEC---IGSRDFYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLRTRRSL  238 (767)
Q Consensus       165 LaS-gS~DGtVrIWDl~tg~~---i~~l~h~~~VtsVafSPdG~~LAsgSdd~--V~VWDl~t~~~~~~~~~l~~h~~~V  238 (767)
                      |+. |-.-|.|.|-|+...+.   .....|...|.|++.+-+|..+|++|..+  |+|||..+++.+...+ .......|
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R-RG~d~A~i  229 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR-RGVDRADI  229 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee-cCCchheE
Confidence            433 55679999999987665   55567999999999999999999999655  9999999998766211 11235689


Q ss_pred             EEEEEccCCCeEEEEEe
Q 004217          239 RAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       239 tsVaFSPDG~~LlaSgs  255 (767)
                      ++++||||+.+|+++++
T Consensus       230 y~iaFSp~~s~LavsSd  246 (346)
T KOG2111|consen  230 YCIAFSPNSSWLAVSSD  246 (346)
T ss_pred             EEEEeCCCccEEEEEcC
Confidence            99999999998888775

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.68  E-value=1.2e-06  Score=99.00  Aligned_cols=157  Identities=12%  Similarity=0.216  Sum_probs=117.8

Q ss_pred             EEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec
Q 004217          111 IAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD  189 (767)
Q Consensus       111 tsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~  189 (767)
                      .+++++. ...++ +++....|+-++++.|..+..|....+.+++|..++ -..+|++|+.||.|-.||.++...+..+.
T Consensus       137 RDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~  214 (703)
T KOG2321|consen  137 RDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLD  214 (703)
T ss_pred             ccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeee
Confidence            3455544 33344 444445788899999999999988889999999999 78899999999999999999887776654


Q ss_pred             CC------------CCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecC--CCCeEEEEEccC--CCeEEE
Q 004217          190 FY------------RPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRT--RRSLRAVHFHPH--AAPLLL  252 (767)
Q Consensus       190 h~------------~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h--~~~VtsVaFSPD--G~~Lla  252 (767)
                      ..            ..|+++.|+.+|-.+++|...+ +.|||+++.+.+.    ...|  .-+|..+.|.+.  +..+++
T Consensus       215 ~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~----~kdh~~e~pi~~l~~~~~~~q~~v~S  290 (703)
T KOG2321|consen  215 AASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL----VKDHGYELPIKKLDWQDTDQQNKVVS  290 (703)
T ss_pred             cccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee----ecccCCccceeeecccccCCCceEEe
Confidence            22            2399999999999999998655 9999999987644    4555  557889999776  343444


Q ss_pred             EEe----eCCcCCCCcceeEeecCC
Q 004217          253 TAE----VNDLDSSESSLTLATSPG  273 (767)
Q Consensus       253 Sgs----vwdl~s~~~~~~l~t~sG  273 (767)
                      .-+    +||-.++.....+....+
T Consensus       291 ~Dk~~~kiWd~~~Gk~~asiEpt~~  315 (703)
T KOG2321|consen  291 MDKRILKIWDECTGKPMASIEPTSD  315 (703)
T ss_pred             cchHHhhhcccccCCceeeccccCC
Confidence            333    888887776655554444

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=1e-06  Score=95.75  Aligned_cols=173  Identities=18%  Similarity=0.149  Sum_probs=132.3

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC-----CC--CCCCCeEEEEECC-CCCeEEEEeCC--CeEEEEECCCCeEEEEEccC
Q 004217           79 DARRGLASWVEAESLHHLRPKYCP-----LS--PPPRSTIAAAFSP-DGKTLASTHGD--HTVKIIDCQTGSCLKVLHGH  148 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~~-----L~--gH~~sVtsVaFSp-DG~~LASgs~D--GtVrVWDl~tg~~l~~L~gH  148 (767)
                      .....|+++..+|.+++|..+.+-     +.  .-...+..+.-.+ +...+++|+..  ..++|||++..+.+..-+.-
T Consensus       113 ~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv  192 (412)
T KOG3881|consen  113 LADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV  192 (412)
T ss_pred             hcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence            356778889999999999998442     11  2224577777777 44556668888  88999999988655543322


Q ss_pred             ---------CCCcEEEEEccCC--CcEEEEEeCCCeEEEEECCCC-eEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-E
Q 004217          149 ---------RRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTA-ECIGSRD-FYRPIASIAFHASGELLAVASGHK-L  214 (767)
Q Consensus       149 ---------~~~V~sLafsP~d--g~lLaSgS~DGtVrIWDl~tg-~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V  214 (767)
                               .-.++.+.|-+ +  ...|+++..-+.|++||.+.+ +++..+. ...+++++...|.|++|++|...+ +
T Consensus       193 pnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l  271 (412)
T KOG3881|consen  193 PNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL  271 (412)
T ss_pred             CCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh
Confidence                     12456788988 6  789999999999999999975 4566665 467899999999999999998655 9


Q ss_pred             EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       215 ~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      ..||++.++...  ..+.+-.+.|++|..+|.+++++.+|
T Consensus       272 ~~FD~r~~kl~g--~~~kg~tGsirsih~hp~~~~las~G  309 (412)
T KOG3881|consen  272 AKFDLRGGKLLG--CGLKGITGSIRSIHCHPTHPVLASCG  309 (412)
T ss_pred             heecccCceeec--cccCCccCCcceEEEcCCCceEEeec
Confidence            999999998755  33667789999999999999555444

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.64  E-value=3.6e-07  Score=96.31  Aligned_cols=183  Identities=13%  Similarity=0.029  Sum_probs=135.4

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECC-CCeEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQ-TGSCLK  143 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~-tg~~l~  143 (767)
                      .+..-++..+..+++...+|.+.+-+....      +.++|.-.++..+|+. +.+++.+|+.|+.+.-||++ .++.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            344556778888998888888885554432      4678999999999998 67899999999999999998 445554


Q ss_pred             E-EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC-CeEEEeecCCCCeEEEEEcCCC--CEEEEEECCcEEEEEc
Q 004217          144 V-LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGSRDFYRPIASIAFHASG--ELLAVASGHKLYIWRY  219 (767)
Q Consensus       144 ~-L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t-g~~i~~l~h~~~VtsVafSPdG--~~LAsgSdd~V~VWDl  219 (767)
                      . .+.|...|.+|.-+|..+.++++|+.|..|++||.++ ++++..-...+.|+.+.++|.-  ++|+++..++.+|-+.
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~  283 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDS  283 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence            3 5679999999999987888999999999999999994 7777777777999999999964  4566777788888887


Q ss_pred             CCCcccc--CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          220 NMREETS--SPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       220 ~t~~~~~--~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .......  .......|.+-++.-.|.... -+++||+
T Consensus       284 ~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~-~~lATCs  320 (339)
T KOG0280|consen  284 SDKVLEFQIVLPSDKIHDSLCYGGDWDSKD-SFLATCS  320 (339)
T ss_pred             cccccchheeeeccccccceeecccccccc-ceeeeee
Confidence            6654321  112233455555555553321 2444544

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.64  E-value=5.8e-07  Score=108.32  Aligned_cols=164  Identities=18%  Similarity=0.157  Sum_probs=114.3

Q ss_pred             EeCCCC---CCCCCCCCeEEEEECCC-CCeEEEEeCCCeEEEEECCCC-------eEEEEEccCCCCcEEEEEccCCCcE
Q 004217           96 LRPKYC---PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTI  164 (767)
Q Consensus        96 Wd~~t~---~L~gH~~sVtsVaFSpD-G~~LASgs~DGtVrVWDl~tg-------~~l~~L~gH~~~V~sLafsP~dg~l  164 (767)
                      |+.+..   .|..|...|..++.+++ +.++++|+.||+||+||+..-       +...++.-....+.++.+.+ +++.
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQ 1112 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCe
Confidence            555433   47789999999999884 499999999999999998641       22333433467788999998 8899


Q ss_pred             EEEEeCCCeEEEEECCCCe-------EEEee--cCCCCeE-EEEEcCC-CC-EEEEEEC-CcEEEEEcCCCccccCCeEE
Q 004217          165 IASGSLDHEVRLWNASTAE-------CIGSR--DFYRPIA-SIAFHAS-GE-LLAVASG-HKLYIWRYNMREETSSPRIV  231 (767)
Q Consensus       165 LaSgS~DGtVrIWDl~tg~-------~i~~l--~h~~~Vt-sVafSPd-G~-~LAsgSd-d~V~VWDl~t~~~~~~~~~l  231 (767)
                      +|.++.||.|++.++...+       +.+..  ...+.+. .-+|... +. .|+.+.+ .+|..||+++....+.....
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            9999999999999987521       12221  2233333 3334332 23 5555554 55999999988765522222


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004217          232 LRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (767)
Q Consensus       232 ~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s  261 (767)
                      . -.+.|++++.+|.+.+++++.+     .||++.
T Consensus      1193 ~-~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1193 L-RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred             c-cccceeEEEecCCceEEEEecCCceEEEEEeec
Confidence            2 2478999999999998887654     888884

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.64  E-value=3.4e-06  Score=94.23  Aligned_cols=167  Identities=17%  Similarity=0.192  Sum_probs=114.3

Q ss_pred             EEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccC
Q 004217           85 ASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL  160 (767)
Q Consensus        85 aSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~  160 (767)
                      ++-..++.|.+.|..+.+    +......-..+.|++||+++++++.|+.|.++|+.+++.+.+++.- .....+++++ 
T Consensus        10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~-   87 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP-   87 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE---
T ss_pred             EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC-
Confidence            455678889999988764    2222222345789999999999999999999999999999988754 3467899999 


Q ss_pred             CCcEEEEE-eCCCeEEEEECCCCeEEEeec--------CCCCeEEEEEcCCCCEEEEEEC--CcEEEEEcCCCccccCCe
Q 004217          161 NPTIIASG-SLDHEVRLWNASTAECIGSRD--------FYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPR  229 (767)
Q Consensus       161 dg~lLaSg-S~DGtVrIWDl~tg~~i~~l~--------h~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~t~~~~~~~~  229 (767)
                      ++++++.+ ..++.+.++|.++.+.++.+.        ....+..+..+|....+++.-.  +.|.+.|+...+...  .
T Consensus        88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~--~  165 (369)
T PF02239_consen   88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK--V  165 (369)
T ss_dssp             TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE--E
T ss_pred             CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc--e
Confidence            77777765 468999999999999988754        2346778888898886666654  348788877664432  2


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          230 IVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       230 ~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .............|+|++++++++..
T Consensus       166 ~~i~~g~~~~D~~~dpdgry~~va~~  191 (369)
T PF02239_consen  166 TTIKVGRFPHDGGFDPDGRYFLVAAN  191 (369)
T ss_dssp             EEEE--TTEEEEEE-TTSSEEEEEEG
T ss_pred             eeecccccccccccCcccceeeeccc
Confidence            23344567788999999999887654

...

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.62  E-value=1.1e-06  Score=102.21  Aligned_cols=171  Identities=18%  Similarity=0.194  Sum_probs=123.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC-------C--C-------CCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCC---e-
Q 004217           82 RGLASWVEAESLHHLRPKYCP-------L--S-------PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG---S-  140 (767)
Q Consensus        82 ~~LaSgs~DgsIrlWd~~t~~-------L--~-------gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg---~-  140 (767)
                      ..+++++.||+|..|+.+.-.       +  .       .....+++++|.+ +...++.|+.+|.|..-+-...   . 
T Consensus       306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~  385 (555)
T KOG1587|consen  306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE  385 (555)
T ss_pred             CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence            569999999999999876421       0  1       1234689999999 7788999999999887443322   1 


Q ss_pred             ----EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC-CCeEEEeec-CCCCeEEEEEcCCCC-EEEEEECCc
Q 004217          141 ----CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TAECIGSRD-FYRPIASIAFHASGE-LLAVASGHK  213 (767)
Q Consensus       141 ----~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~-tg~~i~~l~-h~~~VtsVafSPdG~-~LAsgSdd~  213 (767)
                          ....+..|.+.|.++.++|....+|++++ |.+|+||... ...++..+. +...+++++|||-.. .|+++..++
T Consensus       386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G  464 (555)
T KOG1587|consen  386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDG  464 (555)
T ss_pred             ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCC
Confidence                12345568899999999998778888877 9999999987 555555544 556699999999876 555555444


Q ss_pred             -EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          214 -LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       214 -V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                       |.+||+....... .....-+....+.+.|+++|+.|+++.
T Consensus       465 ~l~iWDLl~~~~~P-v~s~~~~~~~l~~~~~s~~g~~lavGd  505 (555)
T KOG1587|consen  465 NLDIWDLLQDDEEP-VLSQKVCSPALTRVRWSPNGKLLAVGD  505 (555)
T ss_pred             ceehhhhhccccCC-cccccccccccceeecCCCCcEEEEec
Confidence             9999997665422 222333456678888999999655543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.61  E-value=7.4e-07  Score=106.18  Aligned_cols=170  Identities=14%  Similarity=0.119  Sum_probs=134.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCC---CCCCCC-----eEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCC
Q 004217           79 DARRGLASWVEAESLHHLRPKYCPL---SPPPRS-----TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~~L---~gH~~s-----VtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~  150 (767)
                      ...+.++.+..++.+.+||.+...+   ..+...     ..-+-++++.-++++|+--+.|.+|+....+.-..+.||.+
T Consensus        97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG  176 (967)
T KOG0974|consen   97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEG  176 (967)
T ss_pred             hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCC
Confidence            4567788889999999999987621   122222     23345677777899999999999999874443346899999


Q ss_pred             CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEE--eecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccC
Q 004217          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG--SRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS  227 (767)
Q Consensus       151 ~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~--~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~  227 (767)
                      .|..+.|+- ++.++++.|+|.++|+|++.+.+...  -++|...|..++|+|+  .+++++.|. +++|+.+.....  
T Consensus       177 ~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~--  251 (967)
T KOG0974|consen  177 SIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE--  251 (967)
T ss_pred             ceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceeh--
Confidence            999999999 99999999999999999999988765  3789999999999999  888888766 999976654432  


Q ss_pred             CeEEecC-CCCeEEEEEccCCCeEEEEEe
Q 004217          228 PRIVLRT-RRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       228 ~~~l~~h-~~~VtsVaFSPDG~~LlaSgs  255 (767)
                        .+.+| ...|..++.+++...+++.+.
T Consensus       252 --~y~~h~g~~iw~~~~~~~~~~~vT~g~  278 (967)
T KOG0974|consen  252 --VYDEHSGKGIWKIAVPIGVIIKVTGGN  278 (967)
T ss_pred             --hhhhhhhcceeEEEEcCCceEEEeecc
Confidence              45566 567999999988876666555

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.60  E-value=6.1e-07  Score=101.19  Aligned_cols=166  Identities=14%  Similarity=0.179  Sum_probs=127.6

Q ss_pred             EEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc------cCCC---
Q 004217           84 LASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH------GHRR---  150 (767)
Q Consensus        84 LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~------gH~~---  150 (767)
                      |+.+.....|.-++++.+.    +....+.++++..++-..+|++|+.||.|..||.++...+.++.      .|.+   
T Consensus       148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~  227 (703)
T KOG2321|consen  148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA  227 (703)
T ss_pred             EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccc
Confidence            4445555567777888774    44566889999999988999999999999999998776555442      2333   


Q ss_pred             --CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC--CCCeEEEEEcCCC--CEEEEEECCcEEEEEcCCCcc
Q 004217          151 --TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF--YRPIASIAFHASG--ELLAVASGHKLYIWRYNMREE  224 (767)
Q Consensus       151 --~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h--~~~VtsVafSPdG--~~LAsgSdd~V~VWDl~t~~~  224 (767)
                        .|+++.|+- ++-.++.|..+|.|.|||+++.+++....|  .-+|..+.|.+.+  ..|++....-++|||-.+++.
T Consensus       228 ~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~  306 (703)
T KOG2321|consen  228 APSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP  306 (703)
T ss_pred             cCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCc
Confidence              499999988 789999999999999999999998877665  4578899997763  455555444499999998875


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       225 ~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      ..    .......++.+++-|++-.++++-
T Consensus       307 ~a----siEpt~~lND~C~~p~sGm~f~An  332 (703)
T KOG2321|consen  307 MA----SIEPTSDLNDFCFVPGSGMFFTAN  332 (703)
T ss_pred             ee----eccccCCcCceeeecCCceEEEec
Confidence            33    344556699999999988555543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.60  E-value=4.3e-07  Score=96.84  Aligned_cols=138  Identities=17%  Similarity=0.266  Sum_probs=104.6

Q ss_pred             EEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-C
Q 004217          112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-F  190 (767)
Q Consensus       112 sVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h  190 (767)
                      -.+|||+|+++|+++.- .+.|-|.++-+..+.|. --+.|.-+.|..+....+.....|+.|.+|++...+-...+. .
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg   90 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG   90 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence            46899999999999876 78888888766444333 245677899998444556666789999999999888777765 5


Q ss_pred             CCCeEEEEEcCCCCEEEEEEC--CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          191 YRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       191 ~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ...+.+++|||||+.|...+.  -+|.||.+.+.+...    +...+..+..++|+|||++.+....
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~----~~~pK~~~kg~~f~~dg~f~ai~sR  153 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL----LPHPKTNVKGYAFHPDGQFCAILSR  153 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE----ecccccCceeEEECCCCceeeeeec
Confidence            678899999999987777664  349999999877533    3333556789999999997766554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.58  E-value=3.7e-06  Score=93.97  Aligned_cols=140  Identities=14%  Similarity=0.154  Sum_probs=98.6

Q ss_pred             CeE-EEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEE
Q 004217          120 KTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIA  198 (767)
Q Consensus       120 ~~L-ASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVa  198 (767)
                      +++ ++-..++.|.|.|..+.+.+..+.........+.|+| |+++++..+.|+.|.++|+.+.+.++.+........++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~   84 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIA   84 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEE
Confidence            344 4455689999999999999999976554445578999 89999999999999999999999999998888889999


Q ss_pred             EcCCCCEEEEEE--CCcEEEEEcCCCccccCCeEEe----cCCCCeEEEEEccCCCeEEEEE----eeCCcC
Q 004217          199 FHASGELLAVAS--GHKLYIWRYNMREETSSPRIVL----RTRRSLRAVHFHPHAAPLLLTA----EVNDLD  260 (767)
Q Consensus       199 fSPdG~~LAsgS--dd~V~VWDl~t~~~~~~~~~l~----~h~~~VtsVaFSPDG~~LlaSg----svwdl~  260 (767)
                      +++||++++++.  .+.+.++|.++.+.+.......    .....+.+|..+|....++++-    ++|-++
T Consensus        85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd  156 (369)
T PF02239_consen   85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD  156 (369)
T ss_dssp             E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred             EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence            999999999887  4669999999987655111100    0235678898999988666653    356444

...

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.57  E-value=2.9e-05  Score=84.26  Aligned_cols=165  Identities=13%  Similarity=0.181  Sum_probs=119.5

Q ss_pred             CCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCeEEEEeCC---CeEEEEECCC--CeEE--EEEccCCCCcEEE
Q 004217           90 AESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQT--GSCL--KVLHGHRRTPWVV  155 (767)
Q Consensus        90 DgsIrlWd~~t~-------~L~gH~~sVtsVaFSpDG~~LASgs~D---GtVrVWDl~t--g~~l--~~L~gH~~~V~sL  155 (767)
                      ++-|.+|++.+.       ++..+.+..+-|+|+|++++|.++..+   |.|-.|.++.  |+..  ..........+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            566889988743       355788899999999999999988654   6677776664  5532  2222233444889


Q ss_pred             EEccCCCcEEEEEeC-CCeEEEEECCC-CeE---EEeecCCCC----------eEEEEEcCCCCEEEEEE--CCcEEEEE
Q 004217          156 RFHPLNPTIIASGSL-DHEVRLWNAST-AEC---IGSRDFYRP----------IASIAFHASGELLAVAS--GHKLYIWR  218 (767)
Q Consensus       156 afsP~dg~lLaSgS~-DGtVrIWDl~t-g~~---i~~l~h~~~----------VtsVafSPdG~~LAsgS--dd~V~VWD  218 (767)
                      ++++ ++++++++.. -|.|.++-++. |..   +....|...          +.+..|.|++++|++..  .|+|.+|+
T Consensus        95 svd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~  173 (346)
T COG2706          95 SVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD  173 (346)
T ss_pred             EECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence            9999 8888888775 57899999876 433   233445444          88899999999999987  57799999


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +..++..............-+.|.|+|++++..+.++
T Consensus       174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E  210 (346)
T COG2706         174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE  210 (346)
T ss_pred             cccCccccccccccCCCCCcceEEEcCCCcEEEEEec
Confidence            9976653322223345667899999999997777665

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=1.1e-06  Score=95.72  Aligned_cols=162  Identities=14%  Similarity=0.114  Sum_probs=127.7

Q ss_pred             CEEEEEeCC--CeEEEEeCCCCC--CC---------CC--CCCeEEEEECCC--CCeEEEEeCCCeEEEEECCCC-eEEE
Q 004217           82 RGLASWVEA--ESLHHLRPKYCP--LS---------PP--PRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTG-SCLK  143 (767)
Q Consensus        82 ~~LaSgs~D--gsIrlWd~~t~~--L~---------gH--~~sVtsVaFSpD--G~~LASgs~DGtVrVWDl~tg-~~l~  143 (767)
                      ..+++|+..  ..+++||++.++  +.         +-  +--++++.|-+.  ...||++..-+.|++||.+.+ +++.
T Consensus       162 ~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~  241 (412)
T KOG3881|consen  162 YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA  241 (412)
T ss_pred             ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee
Confidence            345557777  778999988762  11         11  123678999886  889999999999999999875 4677


Q ss_pred             EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-e-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcC
Q 004217          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-R-DFYRPIASIAFHASGELLAVASGHK-LYIWRYN  220 (767)
Q Consensus       144 ~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~  220 (767)
                      .|.--...+.++...| +++++++|..-+.+..||++.++.... + +..+.|+++-.+|.+++||+++=|+ |+|+|+.
T Consensus       242 ~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k  320 (412)
T KOG3881|consen  242 QFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK  320 (412)
T ss_pred             EeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence            7777788999999999 999999999999999999999988776 4 4678999999999999999999777 9999999


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCC
Q 004217          221 MREETSSPRIVLRTRRSLRAVHFHPHAA  248 (767)
Q Consensus       221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~  248 (767)
                      +.+.+....    -...++.|.+.++-+
T Consensus       321 trkll~kvY----vKs~lt~il~~~~~n  344 (412)
T KOG3881|consen  321 TRKLLHKVY----VKSRLTFILLRDDVN  344 (412)
T ss_pred             cchhhhhhh----hhccccEEEecCCcc
Confidence            976654111    234567777765543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.54  E-value=4.4e-05  Score=84.29  Aligned_cols=164  Identities=14%  Similarity=0.188  Sum_probs=110.0

Q ss_pred             CeEEEEeC--CCCCCC-----CCCCCeEEEEECCCCCeEEEEeC----CCeEEEEECCC--Ce--EEEEEccCCCCcEEE
Q 004217           91 ESLHHLRP--KYCPLS-----PPPRSTIAAAFSPDGKTLASTHG----DHTVKIIDCQT--GS--CLKVLHGHRRTPWVV  155 (767)
Q Consensus        91 gsIrlWd~--~t~~L~-----gH~~sVtsVaFSpDG~~LASgs~----DGtVrVWDl~t--g~--~l~~L~gH~~~V~sL  155 (767)
                      +.|..|++  ++++|.     .-......++++|++++|.+...    ++.|..|++..  ++  .+............+
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i   92 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI   92 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence            56666666  333222     12345677899999999999877    56899998875  33  333343344566789


Q ss_pred             EEccCCCcEEEEEe-CCCeEEEEECCC-CeEEEe---ec-----------CCCCeEEEEEcCCCCEEEEEE--CCcEEEE
Q 004217          156 RFHPLNPTIIASGS-LDHEVRLWNAST-AECIGS---RD-----------FYRPIASIAFHASGELLAVAS--GHKLYIW  217 (767)
Q Consensus       156 afsP~dg~lLaSgS-~DGtVrIWDl~t-g~~i~~---l~-----------h~~~VtsVafSPdG~~LAsgS--dd~V~VW  217 (767)
                      +++| ++++++.+. .+|+|.++++.. +.....   +.           ......++.|+|+|+++++..  .|+|++|
T Consensus        93 ~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~  171 (345)
T PF10282_consen   93 AVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY  171 (345)
T ss_dssp             EECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             EEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence            9999 777777766 589999999987 443322   21           234578999999999999887  4569999


Q ss_pred             EcCCCcc-ccC-CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          218 RYNMREE-TSS-PRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       218 Dl~t~~~-~~~-~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ++..... +.. ..........-+.+.|+||++++.+..+
T Consensus       172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e  211 (345)
T PF10282_consen  172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE  211 (345)
T ss_dssp             EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET
T ss_pred             EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC
Confidence            9977652 221 1123345677899999999998888765

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.52  E-value=2.9e-06  Score=89.69  Aligned_cols=163  Identities=12%  Similarity=0.151  Sum_probs=120.5

Q ss_pred             EEEEEeCCCeEEEEeCCCCC-------CCCCCC---CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE--EEEccCCC
Q 004217           83 GLASWVEAESLHHLRPKYCP-------LSPPPR---STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVLHGHRR  150 (767)
Q Consensus        83 ~LaSgs~DgsIrlWd~~t~~-------L~gH~~---sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l--~~L~gH~~  150 (767)
                      .++.....|.|.++......       +....-   ...++.|++.+..++++-.+|.+.+-+.......  +.++.|.-
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~  166 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF  166 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence            45556667778777765432       221111   2457899999999999999999997776555443  47899999


Q ss_pred             CcEEEEEccCCCcEEEEEeCCCeEEEEECCC-CeEEEe--ecCCCCeEEEEEcC-CCCEEEEEECCc-EEEEEcCCCccc
Q 004217          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGS--RDFYRPIASIAFHA-SGELLAVASGHK-LYIWRYNMREET  225 (767)
Q Consensus       151 ~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t-g~~i~~--l~h~~~VtsVafSP-dG~~LAsgSdd~-V~VWDl~t~~~~  225 (767)
                      .++-..|+..+.+++.+|+.|+.+..||++. ++.+..  ..|...|.+|.-+| .+.+|++|+.|. |++||.|+-.+.
T Consensus       167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP  246 (339)
T KOG0280|consen  167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP  246 (339)
T ss_pred             eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence            9999999988889999999999999999993 444433  34888899998776 467999999655 999999955432


Q ss_pred             cCCeEEecCCCCeEEEEEccCCC
Q 004217          226 SSPRIVLRTRRSLRAVHFHPHAA  248 (767)
Q Consensus       226 ~~~~~l~~h~~~VtsVaFSPDG~  248 (767)
                      .   ....-.+.|+.+.++|.-.
T Consensus       247 l---~~~~v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  247 L---FKAKVGGGVWRIKHHPEIF  266 (339)
T ss_pred             c---ccCccccceEEEEecchhh
Confidence            2   2233457899999998654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.52  E-value=2.7e-05  Score=85.98  Aligned_cols=183  Identities=15%  Similarity=0.150  Sum_probs=121.1

Q ss_pred             eEEEEEEcCCCEEEEEe-CCCeEEEEeCCC-CCC------C-----------CCCCCeEEEEECCCCCeEEEEeC-CCeE
Q 004217           72 QIFEAGRDARRGLASWV-EAESLHHLRPKY-CPL------S-----------PPPRSTIAAAFSPDGKTLASTHG-DHTV  131 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs-~DgsIrlWd~~t-~~L------~-----------gH~~sVtsVaFSpDG~~LASgs~-DGtV  131 (767)
                      +.-++...+++.|+... .++.|.++++.. +.+      .           .-....+++.|+|||++|++... ...|
T Consensus        89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v  168 (345)
T PF10282_consen   89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV  168 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred             cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence            55677777888888776 588898888875 211      1           12345789999999999887643 3489


Q ss_pred             EEEECCCCe--E--EEEEc-cCCCCcEEEEEccCCCcE-EEEEeCCCeEEEEECC--CCeEEE--eec-------CCCCe
Q 004217          132 KIIDCQTGS--C--LKVLH-GHRRTPWVVRFHPLNPTI-IASGSLDHEVRLWNAS--TAECIG--SRD-------FYRPI  194 (767)
Q Consensus       132 rVWDl~tg~--~--l~~L~-gH~~~V~sLafsP~dg~l-LaSgS~DGtVrIWDl~--tg~~i~--~l~-------h~~~V  194 (767)
                      .+|+++...  .  ...+. ........+.|+| ++++ ++....+++|.++++.  +++...  .+.       .....
T Consensus       169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  247 (345)
T PF10282_consen  169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP  247 (345)
T ss_dssp             EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred             EEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence            999997654  2  22232 2345688999999 6555 4556678999999988  443322  211       12367


Q ss_pred             EEEEEcCCCCEEEEEEC--CcEEEEEcCCC-ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          195 ASIAFHASGELLAVASG--HKLYIWRYNMR-EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       195 tsVafSPdG~~LAsgSd--d~V~VWDl~t~-~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ..|+++|||++|.++..  +.|.+|+++.. ..+.............+.+.|+|+|++|+++..
T Consensus       248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~  311 (345)
T PF10282_consen  248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ  311 (345)
T ss_dssp             EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred             eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence            88999999999999874  45999999432 222212233333556899999999999988775

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.46  E-value=8e-07  Score=96.98  Aligned_cols=99  Identities=18%  Similarity=0.337  Sum_probs=82.4

Q ss_pred             CCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE-ccCCCCcEEEEEccCCCcE
Q 004217           89 EAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLNPTI  164 (767)
Q Consensus        89 ~DgsIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L-~gH~~~V~sLafsP~dg~l  164 (767)
                      +...+.+|+...+   .+.||-..+++|+|+||+++|+++..|..|||-....--.+..| -||+.-|..++.-+  +..
T Consensus       130 D~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~  207 (390)
T KOG3914|consen  130 DVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYL  207 (390)
T ss_pred             CceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--Cce
Confidence            4445667775533   47799999999999999999999999999999887655545444 68999999999976  567


Q ss_pred             EEEEeCCCeEEEEECCCCeEEEeec
Q 004217          165 IASGSLDHEVRLWNASTAECIGSRD  189 (767)
Q Consensus       165 LaSgS~DGtVrIWDl~tg~~i~~l~  189 (767)
                      |+|++.|++|++||+.+|+++..+.
T Consensus       208 LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  208 LLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eeecCCCCcEEEEecccCCcccccc
Confidence            9999999999999999999987654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.43  E-value=5.1e-05  Score=86.29  Aligned_cols=173  Identities=10%  Similarity=0.034  Sum_probs=111.5

Q ss_pred             EEEEEcCCCE-EEEEeC---CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEEeC---CCeEEEEECCCCeEEE
Q 004217           74 FEAGRDARRG-LASWVE---AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLK  143 (767)
Q Consensus        74 ~vA~sd~g~~-LaSgs~---DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASgs~---DGtVrVWDl~tg~~l~  143 (767)
                      ...++.+++. ++..+.   +..|.++|+.+++   +....+.+....|||||+.|+....   +..|.++|+.+++ ..
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-~~  270 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-LT  270 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc-EE
Confidence            3445666664 554333   3458888887763   4455666778899999988765432   3578888988876 44


Q ss_pred             EEccCCCCcEEEEEccCCCcEEEEEe-CCC--eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC--------C
Q 004217          144 VLHGHRRTPWVVRFHPLNPTIIASGS-LDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--------H  212 (767)
Q Consensus       144 ~L~gH~~~V~sLafsP~dg~lLaSgS-~DG--tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd--------d  212 (767)
                      .+..+........|+| |++.|+..+ ..+  .|.+.|+.+++..+.......  ...|+|+|++|+....        +
T Consensus       271 ~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~  347 (419)
T PRK04043        271 QITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKN  347 (419)
T ss_pred             EcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCC
Confidence            4544444344568999 666555544 333  577788888776554332222  2489999998877762        2


Q ss_pred             --cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          213 --KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       213 --~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                        .|.+.|+.++....    +... .......|+|||+.++.+..
T Consensus       348 ~~~I~v~d~~~g~~~~----LT~~-~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        348 TFNLYLISTNSDYIRR----LTAN-GVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             CcEEEEEECCCCCeEE----CCCC-CCcCCeEECCCCCEEEEEEc
Confidence              38888888775422    2222 23346899999998887754

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.41  E-value=1.1e-05  Score=86.92  Aligned_cols=253  Identities=14%  Similarity=0.118  Sum_probs=157.1

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---------CCCCC------------CCCeEEEEECCCCC--eEEEEeCC
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC---------PLSPP------------PRSTIAAAFSPDGK--TLASTHGD  128 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---------~L~gH------------~~sVtsVaFSpDG~--~LASgs~D  128 (767)
                      ..++.+...|.+|++|..+|.|.++.-...         .++.|            ...|..+.|-++++  .++....|
T Consensus        28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd  107 (433)
T KOG1354|consen   28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND  107 (433)
T ss_pred             eeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC
Confidence            445667778999999999999988865421         23333            34688999998654  56777889


Q ss_pred             CeEEEEECCCCe-----------------------------------EEEEE-ccCCCCcEEEEEccCCCcEEEEEeCCC
Q 004217          129 HTVKIIDCQTGS-----------------------------------CLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDH  172 (767)
Q Consensus       129 GtVrVWDl~tg~-----------------------------------~l~~L-~gH~~~V~sLafsP~dg~lLaSgS~DG  172 (767)
                      .+|++|.+....                                   +.+.+ .+|+--|.++.++. |...++|+ .|=
T Consensus       108 ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSA-DdL  185 (433)
T KOG1354|consen  108 KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSA-DDL  185 (433)
T ss_pred             cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeec-cce
Confidence            999999874321                                   11111 25788899999999 88888875 578


Q ss_pred             eEEEEECCC-CeEEEee---cC-----CCCeEEEEEcCCCC--EEEEEECCcEEEEEcCCCccccCCe------------
Q 004217          173 EVRLWNAST-AECIGSR---DF-----YRPIASIAFHASGE--LLAVASGHKLYIWRYNMREETSSPR------------  229 (767)
Q Consensus       173 tVrIWDl~t-g~~i~~l---~h-----~~~VtsVafSPdG~--~LAsgSdd~V~VWDl~t~~~~~~~~------------  229 (767)
                      .|.+|++.- .++....   .+     ..-|++..|||..-  ++.+++.|.|++-|++.........            
T Consensus       186 RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r  265 (433)
T KOG1354|consen  186 RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR  265 (433)
T ss_pred             eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcch
Confidence            899999874 2332222   12     23588899999653  4445556779999999543211000            


Q ss_pred             -EEecCCCCeEEEEEccCCCeEEE----EEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCC
Q 004217          230 -IVLRTRRSLRAVHFHPHAAPLLL----TAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITP  304 (767)
Q Consensus       230 -~l~~h~~~VtsVaFSPDG~~Lla----Sgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~sl  304 (767)
                       .+..--..|..+.|+++|++|++    +-.+||+.....+........+..   +.++          .+.  ..+.-.
T Consensus       266 sffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr---~kLc----------~lY--EnD~If  330 (433)
T KOG1354|consen  266 SFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLR---SKLC----------SLY--ENDAIF  330 (433)
T ss_pred             hhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHH---HHHH----------HHh--hccchh
Confidence             11112346889999999999887    556999863332222211111111   0000          000  011112


Q ss_pred             CceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217          305 PFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       305 pil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                      .-+-++|+.++.++..                 +|-++.|..|+.+.|..+..-
T Consensus       331 dKFec~~sg~~~~v~T-----------------Gsy~n~frvf~~~~gsk~d~t  367 (433)
T KOG1354|consen  331 DKFECSWSGNDSYVMT-----------------GSYNNVFRVFNLARGSKEDFT  367 (433)
T ss_pred             heeEEEEcCCcceEec-----------------ccccceEEEecCCCCcceeec
Confidence            2346889999999886                 345566778886666555433

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.37  E-value=8.2e-05  Score=80.85  Aligned_cols=182  Identities=15%  Similarity=0.145  Sum_probs=129.4

Q ss_pred             eEEEEEEcCCCEEEEEe-CCCeEEEEeCCC-C------CCCCCCCC----------eEEEEECCCCCeEEEEeC-CCeEE
Q 004217           72 QIFEAGRDARRGLASWV-EAESLHHLRPKY-C------PLSPPPRS----------TIAAAFSPDGKTLASTHG-DHTVK  132 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs-~DgsIrlWd~~t-~------~L~gH~~s----------VtsVaFSpDG~~LASgs~-DGtVr  132 (767)
                      ..-+++.++++.|+++. ..+.|.++.++. +      ++..|.+.          +....|.|++++|++..- --.|.
T Consensus        91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~  170 (346)
T COG2706          91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF  170 (346)
T ss_pred             CeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence            46677888888888875 567788888865 3      23345555          899999999999988754 23799


Q ss_pred             EEECCCCeEEE----EEccCCCCcEEEEEccCCCcEEEEE-eCCCeEEEEECCCC--eE--EEe-------ecCCCCeEE
Q 004217          133 IIDCQTGSCLK----VLHGHRRTPWVVRFHPLNPTIIASG-SLDHEVRLWNASTA--EC--IGS-------RDFYRPIAS  196 (767)
Q Consensus       133 VWDl~tg~~l~----~L~gH~~~V~sLafsP~dg~lLaSg-S~DGtVrIWDl~tg--~~--i~~-------l~h~~~Vts  196 (767)
                      +|+++.|+...    .+ ........|.||| +++++... -.+++|.+|.....  +.  +..       +........
T Consensus       171 ~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aa  248 (346)
T COG2706         171 LYDLDDGKLTPADPAEV-KPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAA  248 (346)
T ss_pred             EEEcccCcccccccccc-CCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeE
Confidence            99999876432    22 3445678899999 88876654 46999999998873  21  222       123456778


Q ss_pred             EEEcCCCCEEEEEEC--CcEEEEEcCCCc-cccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          197 IAFHASGELLAVASG--HKLYIWRYNMRE-ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       197 VafSPdG~~LAsgSd--d~V~VWDl~t~~-~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      |..++||++|.++..  +.|.+|.+.... .+........+...-+.+.|+++|++|+++..
T Consensus       249 Ihis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q  310 (346)
T COG2706         249 IHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ  310 (346)
T ss_pred             EEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence            899999999999874  448888876542 22212223334555789999999999888876

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.35  E-value=8.7e-06  Score=92.50  Aligned_cols=140  Identities=11%  Similarity=0.098  Sum_probs=121.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCC------CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCc
Q 004217           79 DARRGLASWVEAESLHHLRPKYCPL------SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~~L------~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V  152 (767)
                      .+...++-|...|.|.+++...+++      ..|.+.|.++.++.+-..|.+++.|+.+..|+..+++.++.+++.+..+
T Consensus        68 ~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~  147 (541)
T KOG4547|consen   68 LDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV  147 (541)
T ss_pred             CCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc
Confidence            4556677788888999999887743      3799999999999999999999999999999999999999999999999


Q ss_pred             EEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCC-----CCEEEEEEC--CcEEEEEcCC
Q 004217          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHAS-----GELLAVASG--HKLYIWRYNM  221 (767)
Q Consensus       153 ~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPd-----G~~LAsgSd--d~V~VWDl~t  221 (767)
                      .+++.+| |+..+++++  ++|++||+++++.+..+. |.++|+++.|--+     |.++.++..  ..+.+|-++.
T Consensus       148 ~sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  148 SSLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ceEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            9999999 788998875  679999999999999875 8899999999877     777777763  3388887765

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.34  E-value=2e-05  Score=87.55  Aligned_cols=158  Identities=16%  Similarity=0.086  Sum_probs=126.5

Q ss_pred             cCcceeecccccceecCCcceEEEEEEcCCCEEEEEeCCC-eEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEEeC
Q 004217           52 KHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAE-SLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHG  127 (767)
Q Consensus        52 ~~~sk~~wd~~~~~~~~s~s~~~vA~sd~g~~LaSgs~Dg-sIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASgs~  127 (767)
                      +....+.|+.-.................+...++.|..|+ .+.++|..+++   +.+.-+.|.++..++||++++.+..
T Consensus       342 kaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd  421 (668)
T COG4946         342 KAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND  421 (668)
T ss_pred             cEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcC
Confidence            3344555766655555444466666666777888999999 89999999874   5567788999999999999999999


Q ss_pred             CCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCC----eEEEEECCCCeEEEeecCCCCeEEEEEcCCC
Q 004217          128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH----EVRLWNASTAECIGSRDFYRPIASIAFHASG  203 (767)
Q Consensus       128 DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DG----tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG  203 (767)
                      ...+.+.|+++|+....=+...+-|+.+.||| ++++++-+--+|    .|+++|+.+++..........=.+-+|+|+|
T Consensus       422 r~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~  500 (668)
T COG4946         422 RFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDG  500 (668)
T ss_pred             ceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCC
Confidence            99999999999986655566677899999999 999999987765    5899999999988776655555678999999


Q ss_pred             CEEEEEE
Q 004217          204 ELLAVAS  210 (767)
Q Consensus       204 ~~LAsgS  210 (767)
                      ++|..-+
T Consensus       501 ryLYfLs  507 (668)
T COG4946         501 RYLYFLS  507 (668)
T ss_pred             cEEEEEe
Confidence            9877655

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.33  E-value=1.1e-05  Score=91.31  Aligned_cols=148  Identities=16%  Similarity=0.282  Sum_probs=106.4

Q ss_pred             CCCeEEEEeCCC--CCCC-CCCCCeEEEEECCCCCeEEEEe--CCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCc
Q 004217           89 EAESLHHLRPKY--CPLS-PPPRSTIAAAFSPDGKTLASTH--GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT  163 (767)
Q Consensus        89 ~DgsIrlWd~~t--~~L~-gH~~sVtsVaFSpDG~~LASgs--~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~  163 (767)
                      .+.++.+.+.+.  +.+. ...++|+++.|+++++.++++.  .--.|.|+|++ ++.+..|.  .++=.++-|+| .++
T Consensus       249 GEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp-~g~  324 (566)
T KOG2315|consen  249 GEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNP-HGN  324 (566)
T ss_pred             ccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECC-CCC
Confidence            355677777762  2222 3478999999999999887654  35689999976 56666653  45557789999 888


Q ss_pred             EEEEEeC---CCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE-------CCcEEEEEcCCCccccCCeEEec
Q 004217          164 IIASGSL---DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-------GHKLYIWRYNMREETSSPRIVLR  233 (767)
Q Consensus       164 lLaSgS~---DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS-------dd~V~VWDl~t~~~~~~~~~l~~  233 (767)
                      +++.++-   -|.|-+||+.+.+++..+..... +-+.|+|||++|+++.       |++++||++.....-.      .
T Consensus       325 ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t-t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~------~  397 (566)
T KOG2315|consen  325 IILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT-TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE------K  397 (566)
T ss_pred             EEEEeecCCCCCceEEEeccchhhccccccCCc-eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh------h
Confidence            8887665   48899999999888887764443 4478999999999886       4669999987654211      1


Q ss_pred             C-CCCeEEEEEccCC
Q 004217          234 T-RRSLRAVHFHPHA  247 (767)
Q Consensus       234 h-~~~VtsVaFSPDG  247 (767)
                      + ......+.|-|-.
T Consensus       398 ~f~sEL~qv~W~P~~  412 (566)
T KOG2315|consen  398 MFKSELLQVEWRPFN  412 (566)
T ss_pred             hhhHhHhheeeeecC
Confidence            1 1256777877643

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.32  E-value=2.5e-06  Score=91.15  Aligned_cols=173  Identities=13%  Similarity=0.105  Sum_probs=123.8

Q ss_pred             EEEEEcCCCEEEEEeCCCeEEEEeCCCCCC---CCCCCCeEEEEECCCCCeEEEE-eCCCeEEEEECCCCeEEEEEccCC
Q 004217           74 FEAGRDARRGLASWVEAESLHHLRPKYCPL---SPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHR  149 (767)
Q Consensus        74 ~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L---~gH~~sVtsVaFSpDG~~LASg-s~DGtVrVWDl~tg~~l~~L~gH~  149 (767)
                      +..++.+|+++++.+.- .+-+-|.++-++   -.--+.|.-+.|..|..+++++ ..|+.|.+|++...+--..+....
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~   91 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ   91 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence            34567899999998766 566666655321   1123567788999988776655 668899999999888888888888


Q ss_pred             CCcEEEEEccCCC-cEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc----EEEEEcCCCcc
Q 004217          150 RTPWVVRFHPLNP-TIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK----LYIWRYNMREE  224 (767)
Q Consensus       150 ~~V~sLafsP~dg-~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~----V~VWDl~t~~~  224 (767)
                      +.+..++|+| ++ .+|.+..-|-.|.+|.+.+.+....--.+..+..++|+|||++.+..+...    +.|..-..-..
T Consensus        92 agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l  170 (447)
T KOG4497|consen   92 AGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL  170 (447)
T ss_pred             CcceeeeECC-CcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence            8999999999 55 667777789999999999887776544445568899999999999888422    33321111111


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCeEE
Q 004217          225 TSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (767)
Q Consensus       225 ~~~~~~l~~h~~~VtsVaFSPDG~~Ll  251 (767)
                      ..   .+.-..-..+.+.|+|||..|+
T Consensus       171 l~---~f~~dT~DltgieWsPdg~~la  194 (447)
T KOG4497|consen  171 LK---EFKLDTIDLTGIEWSPDGNWLA  194 (447)
T ss_pred             HH---hcCCCcccccCceECCCCcEEE
Confidence            11   1222244568899999999876

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.31  E-value=5.1e-05  Score=84.48  Aligned_cols=168  Identities=13%  Similarity=0.062  Sum_probs=128.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCeEEEEeCCC-eEEEEECCCCeEEEEEccCCCCcEEEE
Q 004217           80 ARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDH-TVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~--~L~gH~~sVtsVaFSpDG~~LASgs~DG-tVrVWDl~tg~~l~~L~gH~~~V~sLa  156 (767)
                      +|..++..+ .|+..+.+...+  .-.+|.+.|.-..+.-+++-++.|..|| .+-|+|.++++ ++.+.+.-+.|.++.
T Consensus       331 ~Gd~ia~VS-RGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~  408 (668)
T COG4946         331 NGDYIALVS-RGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVK  408 (668)
T ss_pred             CCcEEEEEe-cCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEE
Confidence            455555554 344444443333  2347788899999999999999999999 89999998887 455666778899999


Q ss_pred             EccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECC-----cEEEEEcCCCccccCCeE
Q 004217          157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-----KLYIWRYNMREETSSPRI  230 (767)
Q Consensus       157 fsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd-----~V~VWDl~t~~~~~~~~~  230 (767)
                      .++ +++.++.+.....+.+.|+.+++....- ...+-|+..+|||+++++|-+--.     .|+++|+..++...    
T Consensus       409 vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~----  483 (668)
T COG4946         409 VSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD----  483 (668)
T ss_pred             EcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE----
Confidence            999 9999999988899999999999876553 356779999999999999988632     29999999887533    


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEE
Q 004217          231 VLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       231 l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      .......-.+-+|.||+++|..-+
T Consensus       484 vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         484 VTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ecCCcccccCcccCCCCcEEEEEe
Confidence            223334456789999999876533

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.27  E-value=8.8e-07  Score=103.52  Aligned_cols=180  Identities=14%  Similarity=0.133  Sum_probs=132.5

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeC-CC-eEEEEECCC-CeEEE
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHG-DH-TVKIIDCQT-GSCLK  143 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~-DG-tVrVWDl~t-g~~l~  143 (767)
                      ...+.+++-+...|+.|+-.|.|+++++.++.    ..+|...|+-+.-+.||..+++.+. .. ...+|++.+ +...+
T Consensus      1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~H 1182 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRH 1182 (1516)
T ss_pred             ceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccc
Confidence            47788899999999999999999999999884    6689999999999999987765543 33 578999864 55556


Q ss_pred             EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-----cCCCCeEEEEEcCCCCEEEEEECCcEEEEE
Q 004217          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-----DFYRPIASIAFHASGELLAVASGHKLYIWR  218 (767)
Q Consensus       144 ~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-----~h~~~VtsVafSPdG~~LAsgSdd~V~VWD  218 (767)
                      .|.+    -.++.|+. ....-+.|.....+.+||+.++..+.++     .....-+++.|+|+.++++--+    .+||
T Consensus      1183 sf~e----d~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndG----vLWD 1253 (1516)
T KOG1832|consen 1183 SFDE----DKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDG----VLWD 1253 (1516)
T ss_pred             cccc----cceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCc----eeee
Confidence            6653    35688887 4444444555567899999998876652     2233447788999998876333    5899


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCC
Q 004217          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSE  263 (767)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~  263 (767)
                      ++..+.+.   .+...... -.=.|+|.|..++.-+++||+++..
T Consensus      1254 vR~~~aIh---~FD~ft~~-~~G~FHP~g~eVIINSEIwD~RTF~ 1294 (1516)
T KOG1832|consen 1254 VRIPEAIH---RFDQFTDY-GGGGFHPSGNEVIINSEIWDMRTFK 1294 (1516)
T ss_pred             eccHHHHh---hhhhheec-ccccccCCCceEEeechhhhhHHHH
Confidence            99886655   22222211 1235999999999999999999643

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.25  E-value=6.3e-06  Score=91.84  Aligned_cols=154  Identities=16%  Similarity=0.182  Sum_probs=120.5

Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE-ccCCCCcEEEEEccC-CCcEEEEEeCCCeEEEEEC
Q 004217          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPL-NPTIIASGSLDHEVRLWNA  179 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L-~gH~~~V~sLafsP~-dg~lLaSgS~DGtVrIWDl  179 (767)
                      +|.+|.+.|..|.|+..|..|++|+.|..|.+||...++....| .||...|..-.|-|. +...+++++.||.|++=.+
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i  216 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI  216 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence            57899999999999999999999999999999999988876665 689999988888874 3457999999999999876


Q ss_pred             CC-CeEEEe---ecCCCCeEEEEEcCCCC-EEEEEECCc-EEEEEcCCCccccCCeEEecCCC---CeEEEEEccCCCeE
Q 004217          180 ST-AECIGS---RDFYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREETSSPRIVLRTRR---SLRAVHFHPHAAPL  250 (767)
Q Consensus       180 ~t-g~~i~~---l~h~~~VtsVafSPdG~-~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~---~VtsVaFSPDG~~L  250 (767)
                      .. +.+..+   ..|.++|..++.-|+.. -|.+++.+. ++-+|++.............+..   ..+.++.+|-..+.
T Consensus       217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~  296 (559)
T KOG1334|consen  217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE  296 (559)
T ss_pred             ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence            54 333322   45999999999999875 466666666 88899988765443333333333   57899999988866


Q ss_pred             EEEEe
Q 004217          251 LLTAE  255 (767)
Q Consensus       251 laSgs  255 (767)
                      ++.++
T Consensus       297 faVgG  301 (559)
T KOG1334|consen  297 FAVGG  301 (559)
T ss_pred             cccCC
Confidence            66655

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.25  E-value=0.00078  Score=74.86  Aligned_cols=96  Identities=13%  Similarity=0.095  Sum_probs=68.5

Q ss_pred             CeEEEEeCCCCCCCCC---CCCeEEEEECCCCCeEEEEeC----------CCeEEEEECCCCeEEEEEccC-------CC
Q 004217           91 ESLHHLRPKYCPLSPP---PRSTIAAAFSPDGKTLASTHG----------DHTVKIIDCQTGSCLKVLHGH-------RR  150 (767)
Q Consensus        91 gsIrlWd~~t~~L~gH---~~sVtsVaFSpDG~~LASgs~----------DGtVrVWDl~tg~~l~~L~gH-------~~  150 (767)
                      ++|.+.|..+.++.+.   ...-..+ +||||+.|+.+..          +..|.+||..+++.+..+.--       ..
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~  105 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT  105 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence            6777788776643211   0111224 9999999987765          789999999999999888632       12


Q ss_pred             CcEEEEEccCCCcEEEEEe-C-CCeEEEEECCCCeEEEee
Q 004217          151 TPWVVRFHPLNPTIIASGS-L-DHEVRLWNASTAECIGSR  188 (767)
Q Consensus       151 ~V~sLafsP~dg~lLaSgS-~-DGtVrIWDl~tg~~i~~l  188 (767)
                      ....++++| ++++++... . +..|-+.|+.+++.+..+
T Consensus       106 ~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei  144 (352)
T TIGR02658       106 YPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMM  144 (352)
T ss_pred             ccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence            234789999 888777554 4 789999999998876653

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.22  E-value=1.3e-05  Score=89.34  Aligned_cols=184  Identities=14%  Similarity=0.077  Sum_probs=139.0

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECC--CCCeEEEEeCCCeEEEEECCC-CeE--
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQT-GSC--  141 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~-----L~gH~~sVtsVaFSp--DG~~LASgs~DGtVrVWDl~t-g~~--  141 (767)
                      +-.+.+...|..|++++.|..|.+||.....     ..+|...|.-..|-|  +.+.|++++.||.|++=.+.. +.+  
T Consensus       145 VntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~  224 (559)
T KOG1334|consen  145 VNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVEN  224 (559)
T ss_pred             cceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceec
Confidence            3345566789999999999999999988763     348999999999988  667899999999999977643 332  


Q ss_pred             EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee---c-CCC---CeEEEEEcCCCC-EEEEEECCc
Q 004217          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR---D-FYR---PIASIAFHASGE-LLAVASGHK  213 (767)
Q Consensus       142 l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l---~-h~~---~VtsVafSPdG~-~LAsgSdd~  213 (767)
                      ...+..|.+.|..++.-|.....|.|++.|+.+.-+|++.+.....+   . +..   ....++.+|... .+++++.+.
T Consensus       225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq  304 (559)
T KOG1334|consen  225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ  304 (559)
T ss_pred             ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhh
Confidence            34566799999999999988889999999999999999976543332   1 222   457889999876 788888776


Q ss_pred             -EEEEEcCCCcccc---------CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          214 -LYIWRYNMREETS---------SPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       214 -V~VWDl~t~~~~~---------~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                       +++||.+.-....         +........-.|++++|+.++.-|+++-.
T Consensus       305 f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn  356 (559)
T KOG1334|consen  305 FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN  356 (559)
T ss_pred             hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence             9999987543321         00111122456899999988877777654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.20  E-value=7.1e-05  Score=78.55  Aligned_cols=175  Identities=9%  Similarity=0.006  Sum_probs=121.3

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC--CCCCCCCC--eEEEEECCCCCeEEEEeCCCeEEEEECCCC-eEE-E-EEccCCCC
Q 004217           79 DARRGLASWVEAESLHHLRPKYC--PLSPPPRS--TIAAAFSPDGKTLASTHGDHTVKIIDCQTG-SCL-K-VLHGHRRT  151 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~--~L~gH~~s--VtsVaFSpDG~~LASgs~DGtVrVWDl~tg-~~l-~-~L~gH~~~  151 (767)
                      +..-.+...+.|.++++.+++.+  +..-|...  +..+++++|++++++.+....|..|.+... +.+ + .....++.
T Consensus       126 d~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~  205 (344)
T KOG4532|consen  126 DLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDH  205 (344)
T ss_pred             ccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCC
Confidence            34555667788888888888765  34455554  889999999999999999999999998753 333 3 23334455


Q ss_pred             cEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE-EEe-----ecCCCCeEEEEEcCCCC--EEEEEE-CCcEEEEEcCCC
Q 004217          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGS-----RDFYRPIASIAFHASGE--LLAVAS-GHKLYIWRYNMR  222 (767)
Q Consensus       152 V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~-i~~-----l~h~~~VtsVafSPdG~--~LAsgS-dd~V~VWDl~t~  222 (767)
                      =.+..|+. ....+|++..||++.|||++.... ...     -.|.+.+..+.|++.|.  +|+..- -..+.+.|+++.
T Consensus       206 gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~  284 (344)
T KOG4532|consen  206 GFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY  284 (344)
T ss_pred             ceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence            67889998 888999999999999999996432 222     13789999999999775  343333 344999999988


Q ss_pred             ccccCC----eEEecCC-CCeEEEEEccCCCeEEEEE
Q 004217          223 EETSSP----RIVLRTR-RSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       223 ~~~~~~----~~l~~h~-~~VtsVaFSPDG~~LlaSg  254 (767)
                      ...+..    .....|. ..|..-.|+.++..+.+..
T Consensus       285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~  321 (344)
T KOG4532|consen  285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN  321 (344)
T ss_pred             ceeeEEecCccccccccccccccccccCCCccccccc
Confidence            754311    1112232 3366666776666444433

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.16  E-value=5.8e-05  Score=81.43  Aligned_cols=147  Identities=12%  Similarity=0.168  Sum_probs=105.7

Q ss_pred             CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe---EEEEEccC-----CCCcEEEEEccCCCcEEEEEeCCCeEEE
Q 004217          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGH-----RRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (767)
Q Consensus       105 gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~---~l~~L~gH-----~~~V~sLafsP~dg~lLaSgS~DGtVrI  176 (767)
                      +|+--|+++.++.|+..++++ +|-.|.+|+++--.   .+..++.+     +.-|++..|||...++|+-.+..|+|++
T Consensus       162 aHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL  240 (433)
T ss_pred             cceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence            578889999999999999886 46789999986422   23333433     3468899999988999999999999999


Q ss_pred             EECCCCeEEE----eec-------------CCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCC----
Q 004217          177 WNASTAECIG----SRD-------------FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTR----  235 (767)
Q Consensus       177 WDl~tg~~i~----~l~-------------h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~----  235 (767)
                      -|++.....-    .++             .-..|..+.|+.+|+|+++-..-.|++||++....  +.....-|.    
T Consensus       241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~--pv~t~~vh~~lr~  318 (433)
T KOG1354|consen  241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAK--PVETYPVHEYLRS  318 (433)
T ss_pred             eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCC--cceEEeehHhHHH
Confidence            9999533211    111             12467889999999999988888899999965443  122333331    


Q ss_pred             --------CCe---EEEEEccCCCeEEEEE
Q 004217          236 --------RSL---RAVHFHPHAAPLLLTA  254 (767)
Q Consensus       236 --------~~V---tsVaFSPDG~~LlaSg  254 (767)
                              +.|   ..++|+.++.++++++
T Consensus       319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGs  348 (433)
T KOG1354|consen  319 KLCSLYENDAIFDKFECSWSGNDSYVMTGS  348 (433)
T ss_pred             HHHHHhhccchhheeEEEEcCCcceEeccc
Confidence                    222   4688999988655544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.12  E-value=7.1e-06  Score=60.87  Aligned_cols=39  Identities=31%  Similarity=0.775  Sum_probs=36.8

Q ss_pred             CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEE
Q 004217          139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN  178 (767)
Q Consensus       139 g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWD  178 (767)
                      ++++.++++|...|++++|+| ++++|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence            467899999999999999999 899999999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.08  E-value=0.00018  Score=90.51  Aligned_cols=151  Identities=15%  Similarity=0.133  Sum_probs=104.9

Q ss_pred             EEEEEEc-CCCEEEEEeCCCeEEEEeCCCCCC---C---------CC------CCCeEEEEECCCCCeE-EEEeCCCeEE
Q 004217           73 IFEAGRD-ARRGLASWVEAESLHHLRPKYCPL---S---------PP------PRSTIAAAFSPDGKTL-ASTHGDHTVK  132 (767)
Q Consensus        73 ~~vA~sd-~g~~LaSgs~DgsIrlWd~~t~~L---~---------gH------~~sVtsVaFSpDG~~L-ASgs~DGtVr  132 (767)
                      .-+++.. ++...++-..++.|++||...+..   .         ++      -.....|+|+||++.| ++-..++.|+
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir  765 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR  765 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence            3455555 556666777888999999866421   1         11      1235679999999855 4556678999


Q ss_pred             EEECCCCeEEEEEcc---------------------CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC-
Q 004217          133 IIDCQTGSCLKVLHG---------------------HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-  190 (767)
Q Consensus       133 VWDl~tg~~l~~L~g---------------------H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h-  190 (767)
                      +||++++.......+                     .-.....++|++ +++++++-..++.|++||..++......+. 
T Consensus       766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G  844 (1057)
T PLN02919        766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTG  844 (1057)
T ss_pred             EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccC
Confidence            999987653211100                     011346889999 888999999999999999998876644321 


Q ss_pred             -------------CCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCcc
Q 004217          191 -------------YRPIASIAFHASGELLAVASG-HKLYIWRYNMREE  224 (767)
Q Consensus       191 -------------~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~  224 (767)
                                   -.....++++++|+++++-+. +.|++||+++++.
T Consensus       845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                         124678999999997666654 4499999988764

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.05  E-value=7.6e-06  Score=91.81  Aligned_cols=153  Identities=16%  Similarity=0.113  Sum_probs=113.3

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS  140 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~  140 (767)
                      ...++.-++...+++.+.|++|++|.++..           ++..|+.+|.++.|-.|-++++++  |+-|.+||.--++
T Consensus       738 iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr  815 (1034)
T KOG4190|consen  738 IRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGR  815 (1034)
T ss_pred             hHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccc
Confidence            334445577788899999999999998742           467899999999999998888865  7889999987777


Q ss_pred             EEEEEcc--CCCCcEEEEEccC-CCcEEEE-EeCCCeEEEEECCCCeEEEeec------CCCCeEEEEEcCCCCEEEEEE
Q 004217          141 CLKVLHG--HRRTPWVVRFHPL-NPTIIAS-GSLDHEVRLWNASTAECIGSRD------FYRPIASIAFHASGELLAVAS  210 (767)
Q Consensus       141 ~l~~L~g--H~~~V~sLafsP~-dg~lLaS-gS~DGtVrIWDl~tg~~i~~l~------h~~~VtsVafSPdG~~LAsgS  210 (767)
                      .+.....  ..+.+..+..-+. +..+++. ++...+|+++|.+..+...+++      .+.-+.+++..+.|++++++-
T Consensus       816 ~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~L  895 (1034)
T KOG4190|consen  816 LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAAL  895 (1034)
T ss_pred             hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHh
Confidence            6653321  1123333443342 3344444 4789999999999987766643      335688999999999999886


Q ss_pred             CC-cEEEEEcCCCcccc
Q 004217          211 GH-KLYIWRYNMREETS  226 (767)
Q Consensus       211 dd-~V~VWDl~t~~~~~  226 (767)
                      .+ .|.+.|.++++.+.
T Consensus       896 SnGci~~LDaR~G~vIN  912 (1034)
T KOG4190|consen  896 SNGCIAILDARNGKVIN  912 (1034)
T ss_pred             cCCcEEEEecCCCceec
Confidence            54 49999999998655

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.04  E-value=0.00038  Score=87.58  Aligned_cols=178  Identities=13%  Similarity=0.098  Sum_probs=111.7

Q ss_pred             EEEEEEcCCCEEEE-EeCCCeEEEEeCCCCC---CCC--C---------------CCCeEEEEECC-CCCeEEEEeCCCe
Q 004217           73 IFEAGRDARRGLAS-WVEAESLHHLRPKYCP---LSP--P---------------PRSTIAAAFSP-DGKTLASTHGDHT  130 (767)
Q Consensus        73 ~~vA~sd~g~~LaS-gs~DgsIrlWd~~t~~---L~g--H---------------~~sVtsVaFSp-DG~~LASgs~DGt  130 (767)
                      .-+++..++..|+. -...+.|+++|..++.   +.+  .               -..-..++|+| ++.++++...++.
T Consensus       627 ~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~  706 (1057)
T PLN02919        627 QGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQ  706 (1057)
T ss_pred             cEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCe
Confidence            34455545554443 4456778888876542   111  0               11346899999 5666677778899


Q ss_pred             EEEEECCCCeEEEEEccC---------------CCCcEEEEEccCCCc-EEEEEeCCCeEEEEECCCCeEEEee------
Q 004217          131 VKIIDCQTGSCLKVLHGH---------------RRTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAECIGSR------  188 (767)
Q Consensus       131 VrVWDl~tg~~l~~L~gH---------------~~~V~sLafsP~dg~-lLaSgS~DGtVrIWDl~tg~~i~~l------  188 (767)
                      |++||..++... .+.+.               -.....|+|+| +++ ++++-+.++.|++||+.++......      
T Consensus       707 I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~  784 (1057)
T PLN02919        707 IWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF  784 (1057)
T ss_pred             EEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence            999999877543 22211               12456799999 555 7777778899999999876532211      


Q ss_pred             -------c-C--------CCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCccccCCe----------EEecCCCCeEEE
Q 004217          189 -------D-F--------YRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPR----------IVLRTRRSLRAV  241 (767)
Q Consensus       189 -------~-h--------~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~~~~----------~l~~h~~~VtsV  241 (767)
                             + .        -.....++|+++|+++++-+. ++|++||..++.......          .....-.....|
T Consensus       785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GI  864 (1057)
T PLN02919        785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGL  864 (1057)
T ss_pred             CcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEE
Confidence                   0 0        012458899999986666654 459999998765422000          001112356789


Q ss_pred             EEccCCCeEEE
Q 004217          242 HFHPHAAPLLL  252 (767)
Q Consensus       242 aFSPDG~~Lla  252 (767)
                      +++++|+.+++
T Consensus       865 avd~dG~lyVa  875 (1057)
T PLN02919        865 ALGENGRLFVA  875 (1057)
T ss_pred             EEeCCCCEEEE
Confidence            99999985444

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.02  E-value=3.5e-05  Score=84.46  Aligned_cols=149  Identities=18%  Similarity=0.248  Sum_probs=98.7

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCCCC-------CCCCCCeEEEEECCCCCeE---EEEeCCCeEEEEECCCCeEEEE
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYCPL-------SPPPRSTIAAAFSPDGKTL---ASTHGDHTVKIIDCQTGSCLKV  144 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~~L-------~gH~~sVtsVaFSpDG~~L---ASgs~DGtVrVWDl~tg~~l~~  144 (767)
                      ...++.++.++....++...+++.....-       ..-...-+++.|-.+....   -.+++...+.+|....+.+ ..
T Consensus        68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~  146 (390)
T KOG3914|consen   68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC-EP  146 (390)
T ss_pred             cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc-ch
Confidence            34455666666666666655555433210       0111222333443333333   3344556666776665543 34


Q ss_pred             EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe--ecCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCC
Q 004217          145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNM  221 (767)
Q Consensus       145 L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~--l~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t  221 (767)
                      +-||-.-++.++|+| |+++++++..|..||+-....--.+..  ++|..-|..++.-++. .|+++++ ++|++||+++
T Consensus       147 ~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             hhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEeccc
Confidence            568999999999999 889999999999999988776655555  5799999999987664 4666664 5599999999


Q ss_pred             Ccccc
Q 004217          222 REETS  226 (767)
Q Consensus       222 ~~~~~  226 (767)
                      ++.+.
T Consensus       225 gk~L~  229 (390)
T KOG3914|consen  225 GKLLD  229 (390)
T ss_pred             CCccc
Confidence            98754

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.96  E-value=0.0014  Score=72.95  Aligned_cols=174  Identities=9%  Similarity=0.078  Sum_probs=110.6

Q ss_pred             EEcCCCEEEEEeC----------CCeEEEEeCCCCCCC------CC-----CCCeEEEEECCCCCeEEEEe-C-CCeEEE
Q 004217           77 GRDARRGLASWVE----------AESLHHLRPKYCPLS------PP-----PRSTIAAAFSPDGKTLASTH-G-DHTVKI  133 (767)
Q Consensus        77 ~sd~g~~LaSgs~----------DgsIrlWd~~t~~L~------gH-----~~sVtsVaFSpDG~~LASgs-~-DGtVrV  133 (767)
                      .+.+++.|+.+..          +..|.+||..+.+..      ..     ...-..++++|||++|+... . +..|-|
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            5566776666554          788999999987422      11     12344899999999998776 3 689999


Q ss_pred             EECCCCeEEEEEccCC-------------------------------CCcEEE--------------EEccCCCcEEEEE
Q 004217          134 IDCQTGSCLKVLHGHR-------------------------------RTPWVV--------------RFHPLNPTIIASG  168 (767)
Q Consensus       134 WDl~tg~~l~~L~gH~-------------------------------~~V~sL--------------afsP~dg~lLaSg  168 (767)
                      .|+.+++.+..+.--.                               ..+...              .|.+.++.+++..
T Consensus       133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs  212 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT  212 (352)
T ss_pred             EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence            9998876655432100                               001111              1223244555554


Q ss_pred             eCCCeEEEEECCCC-----eEEEeec--------CCCCeEEEEEcCCCCEEEEEE-----------CCcEEEEEcCCCcc
Q 004217          169 SLDHEVRLWNASTA-----ECIGSRD--------FYRPIASIAFHASGELLAVAS-----------GHKLYIWRYNMREE  224 (767)
Q Consensus       169 S~DGtVrIWDl~tg-----~~i~~l~--------h~~~VtsVafSPdG~~LAsgS-----------dd~V~VWDl~t~~~  224 (767)
                      .. |+|.+.|+...     +.+..+.        ....+.-++++++|+.+++..           .+.|.++|..+.+.
T Consensus       213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv  291 (352)
T TIGR02658       213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR  291 (352)
T ss_pred             cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE
Confidence            44 99999996443     2222221        122334599999999877743           13499999999887


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCC-eEEEEEe
Q 004217          225 TSSPRIVLRTRRSLRAVHFHPHAA-PLLLTAE  255 (767)
Q Consensus       225 ~~~~~~l~~h~~~VtsVaFSPDG~-~LlaSgs  255 (767)
                      +.    ...-...+..++|+||++ +|+++..
T Consensus       292 i~----~i~vG~~~~~iavS~Dgkp~lyvtn~  319 (352)
T TIGR02658       292 LR----KIELGHEIDSINVSQDAKPLLYALST  319 (352)
T ss_pred             EE----EEeCCCceeeEEECCCCCeEEEEeCC
Confidence            55    222355889999999999 6665553

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.95  E-value=2e-05  Score=85.01  Aligned_cols=159  Identities=9%  Similarity=0.103  Sum_probs=111.7

Q ss_pred             EEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC-----eEEEEEccCCCCcEEEEE
Q 004217           85 ASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG-----SCLKVLHGHRRTPWVVRF  157 (767)
Q Consensus        85 aSgs~DgsIrlWd~~t~--~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg-----~~l~~L~gH~~~V~sLaf  157 (767)
                      ++.+-+..+-+-+++++  +.-..++.|.++.|...+.++..|..+|.|.++|++.+     .+...|. |...|+++..
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~  306 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQI  306 (425)
T ss_pred             ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhh
Confidence            45556777888888876  22236778999999998999999999999999999864     3445554 8888998876


Q ss_pred             ccCCCcEEEEEeCCCeEEEEECCCCeE---EEeec-CCCCeEE--EEEcCCCCEEEEEECCc-EEEEEcCCCccccCC-e
Q 004217          158 HPLNPTIIASGSLDHEVRLWNASTAEC---IGSRD-FYRPIAS--IAFHASGELLAVASGHK-LYIWRYNMREETSSP-R  229 (767)
Q Consensus       158 sP~dg~lLaSgS~DGtVrIWDl~tg~~---i~~l~-h~~~Vts--VafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~-~  229 (767)
                      -..++.+|++.+.+|+|++||++.-++   +..++ |-..-..  +-.++....++++++|. .+||.++.+...... .
T Consensus       307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence            555678899999999999999998777   44433 3322222  22345556777788777 999999988764411 1


Q ss_pred             EEecCCCCeEEEEEc
Q 004217          230 IVLRTRRSLRAVHFH  244 (767)
Q Consensus       230 ~l~~h~~~VtsVaFS  244 (767)
                      ........+.+++|.
T Consensus       387 ~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  387 PYSASEVDIPSVAFD  401 (425)
T ss_pred             CCccccccccceehh
Confidence            111123345566654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.93  E-value=6.1e-06  Score=92.57  Aligned_cols=150  Identities=16%  Similarity=0.185  Sum_probs=108.3

Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC-------CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeE
Q 004217          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-------GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV  174 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t-------g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtV  174 (767)
                      .+.||...|..++--.+.+-+++++.|++||+|.++.       ..|..+++.|+.+|..+.|-. +.+.++++  |+.|
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc--D~gi  806 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC--DGGI  806 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--cCcc
Confidence            4679999999988777888899999999999999863       347788899999999999988 67777764  8999


Q ss_pred             EEEECCCCeEEEeec---CCCCeEEEEEcCC--CCEEEEE-EC-CcEEEEEcCCCccccCCeEE--ecCCCCeEEEEEcc
Q 004217          175 RLWNASTAECIGSRD---FYRPIASIAFHAS--GELLAVA-SG-HKLYIWRYNMREETSSPRIV--LRTRRSLRAVHFHP  245 (767)
Q Consensus       175 rIWDl~tg~~i~~l~---h~~~VtsVafSPd--G~~LAsg-Sd-d~V~VWDl~t~~~~~~~~~l--~~h~~~VtsVaFSP  245 (767)
                      ++||---++.+....   ..+.+..+..-++  ..++..| +. .+|+++|.+..+-....+.-  .+....+++++..+
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~  886 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD  886 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence            999987777665321   2233333333343  3344444 33 44999999987654322222  23456789999999


Q ss_pred             CCCeEEEEE
Q 004217          246 HAAPLLLTA  254 (767)
Q Consensus       246 DG~~LlaSg  254 (767)
                      .|++++++-
T Consensus       887 ~GN~lAa~L  895 (1034)
T KOG4190|consen  887 KGNKLAAAL  895 (1034)
T ss_pred             CcchhhHHh
Confidence            999887643

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.92  E-value=1.1e-05  Score=94.74  Aligned_cols=237  Identities=15%  Similarity=0.141  Sum_probs=152.7

Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeC-CC-eEEEEEC
Q 004217          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-DH-EVRLWNA  179 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~-DG-tVrIWDl  179 (767)
                      .+..|+...+|++|+-+.++|+.|+..|.|+++++.+|.......+|...|+.+.=+- ++..+++.+. .. -..+|++
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHHHhcc
Confidence            4667889999999999999999999999999999999999999999999999998887 6665555443 33 5789998


Q ss_pred             CC-CeEEEeecCCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCccccCC-eEEecCCCCeEEEEEccCCCeEEEEEee
Q 004217          180 ST-AECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSP-RIVLRTRRSLRAVHFHPHAAPLLLTAEV  256 (767)
Q Consensus       180 ~t-g~~i~~l~h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~~~-~~l~~h~~~VtsVaFSPDG~~LlaSgsv  256 (767)
                      .+ +...+.+.   .-.++.|+..-++-+.|. .+...+||+.+....... .-..+....-+...|+|+...++--|-.
T Consensus      1175 ~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGvL 1251 (1516)
T KOG1832|consen 1175 SSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGVL 1251 (1516)
T ss_pred             ccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCcee
Confidence            75 44444443   334677887665555555 456999999998875521 1112223344789999999988888889


Q ss_pred             CCcCCCCcceeEeecC----CCccCCCC-eEE----EecCCCCCCCceeeccCCCCCCce---eeEEecCCCEEEEeecC
Q 004217          257 NDLDSSESSLTLATSP----GYWRYPPP-VIC----MAGAHSSSHPGLAEEVPLITPPFL---RPSFVRDDERISLQHTE  324 (767)
Q Consensus       257 wdl~s~~~~~~l~t~s----G~~~~p~~-~v~----l~~~~Ssd~~~L~sg~~~~slpil---~psFSpDg~rIva~~~~  324 (767)
                      ||++..+....+..++    |.++ |.. -+.    +|+..+        -.-..+.|-+   .+.|..-|..+|+.-+.
T Consensus      1252 WDvR~~~aIh~FD~ft~~~~G~FH-P~g~eVIINSEIwD~RT--------F~lLh~VP~Ldqc~VtFNstG~VmYa~~~~ 1322 (1516)
T KOG1832|consen 1252 WDVRIPEAIHRFDQFTDYGGGGFH-PSGNEVIINSEIWDMRT--------FKLLHSVPSLDQCAVTFNSTGDVMYAMLNI 1322 (1516)
T ss_pred             eeeccHHHHhhhhhheeccccccc-CCCceEEeechhhhhHH--------HHHHhcCccccceEEEeccCccchhhhhhh
Confidence            9999654332222111    1111 211 111    122111        0111223433   56777777777775555


Q ss_pred             CCCCCcccccccccCCceeeeeccCCC
Q 004217          325 HDSGATRTQQSLRSSSSVRLLTYSTPS  351 (767)
Q Consensus       325 ~d~Gs~~~~~~~~ss~~~~l~~~~~~~  351 (767)
                      .|.-+-.-..+....-...|..+++-+
T Consensus      1323 ~d~~sdvh~~r~k~p~fSSFRTf~a~d 1349 (1516)
T KOG1832|consen 1323 EDVMSDVHTRRVKHPLFSSFRTFDAID 1349 (1516)
T ss_pred             hhhhhhhcccccccchhhhhccccccc
Confidence            554444455555555555555555543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.87  E-value=0.00033  Score=74.87  Aligned_cols=191  Identities=13%  Similarity=0.140  Sum_probs=126.4

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---------CCCCCC------------CCeEEEEECCCCC--eEEEEeCC
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC---------PLSPPP------------RSTIAAAFSPDGK--TLASTHGD  128 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---------~L~gH~------------~sVtsVaFSpDG~--~LASgs~D  128 (767)
                      ...+-+...|.+|++|...|.|.++.-...         ++++|.            ..|..+.|-.++.  .++..+.|
T Consensus        29 ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNd  108 (460)
T COG5170          29 ITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTND  108 (460)
T ss_pred             eeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCC
Confidence            445556677899999998899998876532         245553            3588899887543  46667789


Q ss_pred             CeEEEEECCCCe-------------------------------------EE-----EEE-ccCCCCcEEEEEccCCCcEE
Q 004217          129 HTVKIIDCQTGS-------------------------------------CL-----KVL-HGHRRTPWVVRFHPLNPTII  165 (767)
Q Consensus       129 GtVrVWDl~tg~-------------------------------------~l-----~~L-~gH~~~V~sLafsP~dg~lL  165 (767)
                      .+|++|.+....                                     .+     +.+ ..|.--|.++.|+. +...+
T Consensus       109 ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~  187 (460)
T COG5170         109 KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETL  187 (460)
T ss_pred             ceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-chhee
Confidence            999999873220                                     00     111 24667788899988 77777


Q ss_pred             EEEeCCCeEEEEECCCCeE-EE---eecCC-----CCeEEEEEcCCCC--EEEEEECCcEEEEEcCCCccccCC------
Q 004217          166 ASGSLDHEVRLWNASTAEC-IG---SRDFY-----RPIASIAFHASGE--LLAVASGHKLYIWRYNMREETSSP------  228 (767)
Q Consensus       166 aSgS~DGtVrIWDl~tg~~-i~---~l~h~-----~~VtsVafSPdG~--~LAsgSdd~V~VWDl~t~~~~~~~------  228 (767)
                      +++ .|=.|.+|++..... ..   ...|.     .-|++..|+|...  +..+.+.+.|++-|++........      
T Consensus       188 lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~  266 (460)
T COG5170         188 LSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL  266 (460)
T ss_pred             eec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh
Confidence            775 578899999875322 11   12232     3578899999654  455555677999999954321100      


Q ss_pred             -------eEEecCCCCeEEEEEccCCCeEEE----EEeeCCcCCCCc
Q 004217          229 -------RIVLRTRRSLRAVHFHPHAAPLLL----TAEVNDLDSSES  264 (767)
Q Consensus       229 -------~~l~~h~~~VtsVaFSPDG~~Lla----Sgsvwdl~s~~~  264 (767)
                             ..+.+-...|..+.|+++|+++++    +-.+||+.....
T Consensus       267 ~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~  313 (460)
T COG5170         267 TIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKN  313 (460)
T ss_pred             ccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccC
Confidence                   011122457889999999998876    455999885443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=0.00052  Score=78.11  Aligned_cols=136  Identities=15%  Similarity=0.207  Sum_probs=95.5

Q ss_pred             EEEEECCCCCe-EEEEe--CC---------CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEE--EeCCCeEEE
Q 004217          111 IAAAFSPDGKT-LASTH--GD---------HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIAS--GSLDHEVRL  176 (767)
Q Consensus       111 tsVaFSpDG~~-LASgs--~D---------GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaS--gS~DGtVrI  176 (767)
                      ..+.|++-|+- |+.++  -|         .++++.+++...+...+. -.++|.++.|+| ++..|+.  |-.-.++.|
T Consensus       221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~-s~~EF~VvyGfMPAkvti  298 (566)
T KOG2315|consen  221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSP-SGREFAVVYGFMPAKVTI  298 (566)
T ss_pred             eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECC-CCCEEEEEEecccceEEE
Confidence            45788886653 33222  23         468888888555555554 468999999999 6654444  566788999


Q ss_pred             EECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC----CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217          177 WNASTAECIGSRDFYRPIASIAFHASGELLAVASG----HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       177 WDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd----d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla  252 (767)
                      ||++ +..+..+. .++-+++-|+|.|++|+.++-    +.+-|||+.+.+.+.   ...  -..-+-+.|+|||+++++
T Consensus       299 fnlr-~~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~---~~~--a~~tt~~eW~PdGe~flT  371 (566)
T KOG2315|consen  299 FNLR-GKPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIA---KFK--AANTTVFEWSPDGEYFLT  371 (566)
T ss_pred             EcCC-CCEeEeCC-CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcc---ccc--cCCceEEEEcCCCcEEEE
Confidence            9986 44555554 455677899999999988883    349999999876644   222  234456899999999887


Q ss_pred             EEe
Q 004217          253 TAE  255 (767)
Q Consensus       253 Sgs  255 (767)
                      +.-
T Consensus       372 ATT  374 (566)
T KOG2315|consen  372 ATT  374 (566)
T ss_pred             Eec
Confidence            653

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.83  E-value=0.0045  Score=67.30  Aligned_cols=216  Identities=15%  Similarity=0.115  Sum_probs=139.3

Q ss_pred             CCeEEEEECC-CCCeEEEEeCCC-eEEEEECCCCeEEEEEccCCCCcE--EEEEccCCCcEEEEEeC-----CCeEEEEE
Q 004217          108 RSTIAAAFSP-DGKTLASTHGDH-TVKIIDCQTGSCLKVLHGHRRTPW--VVRFHPLNPTIIASGSL-----DHEVRLWN  178 (767)
Q Consensus       108 ~sVtsVaFSp-DG~~LASgs~DG-tVrVWDl~tg~~l~~L~gH~~~V~--sLafsP~dg~lLaSgS~-----DGtVrIWD  178 (767)
                      .....++.+| ++..++.+-.-| ...+||..+++....+....+.-.  .-.|++ ++++|++.-.     .|.|-|||
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd   83 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYD   83 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEE
Confidence            3456788899 666667776655 478899999998877754333321  367999 8888888644     47899999


Q ss_pred             CC-CCeEEEeec-CCCCeEEEEEcCCCCEEEEEECC-------------------cEEEEEcCCCccccCCeEE--ecCC
Q 004217          179 AS-TAECIGSRD-FYRPIASIAFHASGELLAVASGH-------------------KLYIWRYNMREETSSPRIV--LRTR  235 (767)
Q Consensus       179 l~-tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd-------------------~V~VWDl~t~~~~~~~~~l--~~h~  235 (767)
                      .. +.+.+.++. +.-....+.+.|||+.|+++..+                   .|...|..+++.+. ...+  ..|.
T Consensus        84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~-q~~Lp~~~~~  162 (305)
T PF07433_consen   84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE-QVELPPDLHQ  162 (305)
T ss_pred             CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee-eeecCccccc
Confidence            99 566666664 44455678899999888877522                   15556667776554 2223  3477


Q ss_pred             CCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCC--CCC--CceeeEE
Q 004217          236 RSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPL--ITP--PFLRPSF  311 (767)
Q Consensus       236 ~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~--~sl--pil~psF  311 (767)
                      -.|+.+++.++|.  +..+.-|.-..++..-              .+.+.....  ...+......  ..+  -+-.++|
T Consensus       163 lSiRHLa~~~~G~--V~~a~Q~qg~~~~~~P--------------Lva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~  224 (305)
T PF07433_consen  163 LSIRHLAVDGDGT--VAFAMQYQGDPGDAPP--------------LVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAA  224 (305)
T ss_pred             cceeeEEecCCCc--EEEEEecCCCCCccCC--------------eEEEEcCCC--cceeccCChHHHHhhCCceEEEEE
Confidence            8899999999997  3334344444333322              233322111  1111111110  111  2227999


Q ss_pred             ecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217          312 VRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS  359 (767)
Q Consensus       312 SpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~  359 (767)
                      +.|++.|.+                .+..+..+.+||.++++.-....
T Consensus       225 ~~~g~~ia~----------------tsPrGg~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  225 DRDGRLIAV----------------TSPRGGRVAVWDAATGRLLGSVP  256 (305)
T ss_pred             eCCCCEEEE----------------ECCCCCEEEEEECCCCCEeeccc
Confidence            999999987                34567789999999988877663

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.82  E-value=2.6e-05  Score=57.81  Aligned_cols=34  Identities=35%  Similarity=0.486  Sum_probs=32.0

Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEE
Q 004217          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIID  135 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWD  135 (767)
                      .+.+|...|.+|+|+|++++|++++.|++|+|||
T Consensus         6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            3568999999999999999999999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.80  E-value=0.0053  Score=65.43  Aligned_cols=184  Identities=18%  Similarity=0.161  Sum_probs=113.9

Q ss_pred             EEEcCCCEEEEEeCCCeEEEEeCCCC--------C-CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217           76 AGRDARRGLASWVEAESLHHLRPKYC--------P-LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        76 A~sd~g~~LaSgs~DgsIrlWd~~t~--------~-L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~  146 (767)
                      +..++|+.|+.- .|..|.+=..+..        + -+...-.-.-++||||+.+||.+...|+|+++|+.... +..+.
T Consensus         4 ~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~   81 (282)
T PF15492_consen    4 ALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIP   81 (282)
T ss_pred             eecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcC
Confidence            344566666654 4666666555432        1 12233346789999999999999999999999987533 33332


Q ss_pred             c-------CCCCcEEEEEccCC-----CcEEEEEeCCCeEEEEECCC-----CeEEEeec----CCCCeEEEEEcCCCCE
Q 004217          147 G-------HRRTPWVVRFHPLN-----PTIIASGSLDHEVRLWNAST-----AECIGSRD----FYRPIASIAFHASGEL  205 (767)
Q Consensus       147 g-------H~~~V~sLafsP~d-----g~lLaSgS~DGtVrIWDl~t-----g~~i~~l~----h~~~VtsVafSPdG~~  205 (767)
                      .       -...|..+.|-+..     ...|+.-..+|.++-|-+..     .+....+.    ....|.++.|+|..++
T Consensus        82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L  161 (282)
T PF15492_consen   82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL  161 (282)
T ss_pred             cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence            2       12456666675422     22566667788888777532     22233332    4678999999999998


Q ss_pred             EEEEEC----C--------cEEEEEcCCCcc-----------cc-C---------C--eEE---ecCCCCeEEEEEccCC
Q 004217          206 LAVASG----H--------KLYIWRYNMREE-----------TS-S---------P--RIV---LRTRRSLRAVHFHPHA  247 (767)
Q Consensus       206 LAsgSd----d--------~V~VWDl~t~~~-----------~~-~---------~--~~l---~~h~~~VtsVaFSPDG  247 (767)
                      |++|+.    +        ++..|.+-.+..           +. .         .  ..+   ..-...|..+..||||
T Consensus       162 LlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg  241 (282)
T PF15492_consen  162 LLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDG  241 (282)
T ss_pred             EEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCC
Confidence            888861    1        377776544321           00 0         0  000   1135679999999999


Q ss_pred             CeEEEEE---e--eCCcCC
Q 004217          248 APLLLTA---E--VNDLDS  261 (767)
Q Consensus       248 ~~LlaSg---s--vwdl~s  261 (767)
                      +.|++.-   +  +|++-.
T Consensus       242 ~~La~ih~sG~lsLW~iPs  260 (282)
T PF15492_consen  242 SLLACIHFSGSLSLWEIPS  260 (282)
T ss_pred             CEEEEEEcCCeEEEEecCc
Confidence            9776632   2  676653

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.80  E-value=0.00018  Score=83.23  Aligned_cols=107  Identities=11%  Similarity=0.024  Sum_probs=84.0

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-------------------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-------------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVK  132 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-------------------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVr  132 (767)
                      .-++.+.....+++.|+.||.+++..+.+.                   .|.||..+|.-+.|+.+.+.|-+...+|.|.
T Consensus        17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIi   96 (1189)
T KOG2041|consen   17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLII   96 (1189)
T ss_pred             EEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEE
Confidence            445667778899999999999999987652                   3679999999999999999999999999999


Q ss_pred             EEECCCCeEEEEE--ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEEC
Q 004217          133 IIDCQTGSCLKVL--HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (767)
Q Consensus       133 VWDl~tg~~l~~L--~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl  179 (767)
                      ||-+-.|.-...+  ...+..|.+++|+. ++..++..-.||.|.+=.+
T Consensus        97 VWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsv  144 (1189)
T KOG2041|consen   97 VWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSV  144 (1189)
T ss_pred             EEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEee
Confidence            9998777533222  12456788999999 7777777777776655333

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.78  E-value=0.00052  Score=80.86  Aligned_cols=161  Identities=17%  Similarity=0.149  Sum_probs=114.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEE
Q 004217           80 ARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF  157 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~--~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLaf  157 (767)
                      .++.++-|+-+|.|++.+....  +...|...      ..+|.++++|+.||+|.|-.+-+.+...++. -..++.++++
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial  120 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIAL  120 (846)
T ss_pred             hcceeeeccccceEEEEecCCccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEe
Confidence            5677777888889988887544  22334333      5689999999999999999998887776664 3577999999


Q ss_pred             ccC----CCcEEEEEeCCCeEEEEECCC---CeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccC---
Q 004217          158 HPL----NPTIIASGSLDHEVRLWNAST---AECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSS---  227 (767)
Q Consensus       158 sP~----dg~lLaSgS~DGtVrIWDl~t---g~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~---  227 (767)
                      +|+    ..+.+++|+.-| +.++.-+-   ...+..-...++|.++.|.  |+++|-+++.+|+|||+.+.+.+..   
T Consensus       121 ~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l~~i~~  197 (846)
T KOG2066|consen  121 HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRLTNIPP  197 (846)
T ss_pred             ccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEEEeccccceeeccCC
Confidence            993    256899999888 77765332   2222223467899999995  8899999999999999988875431   


Q ss_pred             CeEEecCCCCeEEEEEccCCCeE
Q 004217          228 PRIVLRTRRSLRAVHFHPHAAPL  250 (767)
Q Consensus       228 ~~~l~~h~~~VtsVaFSPDG~~L  250 (767)
                      +........--..+.|.++.+.+
T Consensus       198 p~~~~R~e~fpphl~W~~~~~LV  220 (846)
T KOG2066|consen  198 PSQSVRPELFPPHLHWQDEDRLV  220 (846)
T ss_pred             CCCCCCcccCCCceEecCCCeEE
Confidence            11011112234578888877733

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.76  E-value=0.0045  Score=64.59  Aligned_cols=169  Identities=15%  Similarity=0.150  Sum_probs=107.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCCC-CCCCeEEEEEC-CCCCeEEEEeCCCeEEEEECCCCeEEEEEcc-----CCCCc
Q 004217           80 ARRGLASWVEAESLHHLRPKYCPLSP-PPRSTIAAAFS-PDGKTLASTHGDHTVKIIDCQTGSCLKVLHG-----HRRTP  152 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~~L~g-H~~sVtsVaFS-pDG~~LASgs~DGtVrVWDl~tg~~l~~L~g-----H~~~V  152 (767)
                      .+..+++-...+.|..|+..+++... .......+++. +++++ +.+..+ .+.++|..+++....+..     .....
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l-~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~   88 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRL-YVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRP   88 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEE-EEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEE-EEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCC
Confidence            55666666678888888888774221 11227788888 56554 445554 455569999865443332     23457


Q ss_pred             EEEEEccCCCcEEEEEeCC--------CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC--CcEEEEEcCCC
Q 004217          153 WVVRFHPLNPTIIASGSLD--------HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMR  222 (767)
Q Consensus       153 ~sLafsP~dg~lLaSgS~D--------GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~t~  222 (767)
                      +.+++.| +++++++....        +.|..++.. ++.......-...+.++|+|+++.|+++..  +.|..+|+...
T Consensus        89 ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~  166 (246)
T PF08450_consen   89 NDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD  166 (246)
T ss_dssp             EEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT
T ss_pred             ceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEecccc
Confidence            8899999 88888886644        567778877 665555555566789999999998877663  44999998644


Q ss_pred             cc-ccCCeEEec-C--CCCeEEEEEccCCCeEEE
Q 004217          223 EE-TSSPRIVLR-T--RRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       223 ~~-~~~~~~l~~-h--~~~VtsVaFSPDG~~Lla  252 (767)
                      .. +.....+.. .  ....-.+++..+|+.+++
T Consensus       167 ~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va  200 (246)
T PF08450_consen  167 GGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA  200 (246)
T ss_dssp             TCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE
T ss_pred             ccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE
Confidence            32 221122211 1  224788999999985444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.75  E-value=0.0022  Score=67.61  Aligned_cols=167  Identities=12%  Similarity=-0.007  Sum_probs=114.1

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECCC-CCeEEEEeCCCeEEEEECCCCeEEEEEccCCC--
Q 004217           79 DARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR--  150 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~~-----L~gH~~sVtsVaFSpD-G~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~--  150 (767)
                      .....|+.|+..|...+|...+.+     ...|...|+-+.=.-| ...+..++.|.++++.+++.+.....+  |..  
T Consensus        82 ~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--h~~~~  159 (344)
T KOG4532|consen   82 NKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--HNQNL  159 (344)
T ss_pred             ccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee--ecccc
Confidence            356778888889999999987652     1123332221111111 224667889999999998755432222  333  


Q ss_pred             CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe--EEEe--ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccc
Q 004217          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE--CIGS--RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET  225 (767)
Q Consensus       151 ~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~--~i~~--l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~  225 (767)
                      .+.++.+++ +++++++.+....|..|.+....  .++.  ....+.-.+..|+.....+|++..|+ +.|||++.....
T Consensus       160 ~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp  238 (344)
T KOG4532|consen  160 TQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP  238 (344)
T ss_pred             ceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence            378899999 99999999999999999887533  2222  22445556788999999999999666 999999876432


Q ss_pred             cC--CeEEecCCCCeEEEEEccCCC
Q 004217          226 SS--PRIVLRTRRSLRAVHFHPHAA  248 (767)
Q Consensus       226 ~~--~~~l~~h~~~VtsVaFSPDG~  248 (767)
                      ..  ......|.+.++.+.|++-|.
T Consensus       239 m~~~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  239 MAEISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             hhhhcccCCCCCCceEEEEecCCCc
Confidence            21  122345899999999998665

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=97.75  E-value=7.3e-05  Score=93.50  Aligned_cols=149  Identities=11%  Similarity=0.121  Sum_probs=120.9

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L  145 (767)
                      ++++.......+-++|+.||++++|.-..++      ..+. ..|+.+.|+..|+.+..+..||.+-+|.+. .+.....
T Consensus      2211 v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~ 2288 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSW 2288 (2439)
T ss_pred             eeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC-Ccceecc
Confidence            5666666777888999999999999876652      2244 889999999999999999999999999976 5566677


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEEe---CCCeEEEEECCCCe---EEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEE
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASGS---LDHEVRLWNASTAE---CIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWR  218 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSgS---~DGtVrIWDl~tg~---~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWD  218 (767)
                      +.|......++|-.   ..+++.+   .++.+.+||..-..   ++. ..|...++++++-|..++|++|+.++ |++||
T Consensus      2289 qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D 2364 (2439)
T KOG1064|consen 2289 QCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFD 2364 (2439)
T ss_pred             ccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEee
Confidence            88988888888854   6677754   57889999976422   333 56999999999999999999999766 99999


Q ss_pred             cCCCcccc
Q 004217          219 YNMREETS  226 (767)
Q Consensus       219 l~t~~~~~  226 (767)
                      ++..+...
T Consensus      2365 ~rqrql~h 2372 (2439)
T KOG1064|consen 2365 IRQRQLRH 2372 (2439)
T ss_pred             hHHHHHHH
Confidence            99887644

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.75  E-value=0.00012  Score=76.64  Aligned_cols=92  Identities=23%  Similarity=0.320  Sum_probs=71.6

Q ss_pred             CCeEEEEeCCCCC-CC---CCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEE-EEEccCCCCcEEEEEccCCCc
Q 004217           90 AESLHHLRPKYCP-LS---PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCL-KVLHGHRRTPWVVRFHPLNPT  163 (767)
Q Consensus        90 DgsIrlWd~~t~~-L~---gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l-~~L~gH~~~V~sLafsP~dg~  163 (767)
                      -+..+.|+++..+ +.   .--..|.+++-+| ..+++++|+.||.+-+||.+..... ..++.|+..++.+-|||.++.
T Consensus       158 ~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~  237 (319)
T KOG4714|consen  158 QDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE  237 (319)
T ss_pred             ccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch
Confidence            3345566655431 11   1123499999999 5556778888999999999887543 557899999999999999999


Q ss_pred             EEEEEeCCCeEEEEECCC
Q 004217          164 IIASGSLDHEVRLWNAST  181 (767)
Q Consensus       164 lLaSgS~DGtVrIWDl~t  181 (767)
                      .|+++++||.+..||..+
T Consensus       238 ~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  238 HLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             heeEecCCCcEEEEcCCC
Confidence            999999999999999874

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.73  E-value=0.00044  Score=74.86  Aligned_cols=179  Identities=14%  Similarity=0.194  Sum_probs=130.2

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCC-CC-----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECC----CCeEEEEEccC
Q 004217           79 DARRGLASWVEAESLHHLRPKY-CP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ----TGSCLKVLHGH  148 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t-~~-----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~----tg~~l~~L~gH  148 (767)
                      .....+++.++|.++|+|--.. ++     ...-+.+++++.++++-..|+.|-..|++.-+.+.    ....++.+..|
T Consensus        34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h  113 (404)
T KOG1409|consen   34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAH  113 (404)
T ss_pred             cCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhh
Confidence            4567789999999999997543 22     22346789999999999999999999999988664    34455666789


Q ss_pred             CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC-----------------------------e------------EEEe
Q 004217          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-----------------------------E------------CIGS  187 (767)
Q Consensus       149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg-----------------------------~------------~i~~  187 (767)
                      ...|..+-|+- ...++++.+.|..+.---.+.+                             +            .+..
T Consensus       114 ~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~  192 (404)
T KOG1409|consen  114 QARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITT  192 (404)
T ss_pred             hcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEE
Confidence            99999988887 6778888877765432111111                             1            1111


Q ss_pred             -ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcC
Q 004217          188 -RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLD  260 (767)
Q Consensus       188 -l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~  260 (767)
                       .+|...+.+++|.+....|.+|..+. +.+||+-..+...  ....+|...|..+..-+.-+.+++.++     .|+++
T Consensus       193 ~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~--~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  193 FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA--YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee--eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence             24778899999999999999998665 9999997766533  467788888888887777666666554     56555

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.0002  Score=78.63  Aligned_cols=151  Identities=20%  Similarity=0.173  Sum_probs=110.0

Q ss_pred             CCCCCCCeEEEEECCCCC-eEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC
Q 004217          103 LSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (767)
Q Consensus       103 L~gH~~sVtsVaFSpDG~-~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t  181 (767)
                      +.+|...|.+++|||..+ +|..++.+.+|+|.|+++..++..+..| ..+++++|.-++.+++..|...|.|.+||++.
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            557888899999999666 7889999999999999999999888877 78999999997888999999999999999997


Q ss_pred             CeEE-Eeec---CCCCeEEEEEcC------CCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEE
Q 004217          182 AECI-GSRD---FYRPIASIAFHA------SGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (767)
Q Consensus       182 g~~i-~~l~---h~~~VtsVafSP------dG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Ll  251 (767)
                      .+-. ..+.   ...+|..++.-+      -|. |+++..-.+..|++.......+.....+..+.+.+++.++-.+.++
T Consensus       268 ~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l  346 (463)
T KOG1645|consen  268 PEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLL  346 (463)
T ss_pred             CCchHhhhhhhhccCcceeecccCccccccccc-eEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccceEE
Confidence            5432 2221   234444444322      233 3334445577887765554333333344466777888888778888


Q ss_pred             EEEe
Q 004217          252 LTAE  255 (767)
Q Consensus       252 aSgs  255 (767)
                      ++-.
T Consensus       347 ~tyR  350 (463)
T KOG1645|consen  347 LTYR  350 (463)
T ss_pred             EEec
Confidence            8765

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.69  E-value=0.00028  Score=75.32  Aligned_cols=147  Identities=16%  Similarity=0.226  Sum_probs=104.6

Q ss_pred             CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe---EEEEEccCC-----CCcEEEEEccCCCcEEEEEeCCCeEEE
Q 004217          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHR-----RTPWVVRFHPLNPTIIASGSLDHEVRL  176 (767)
Q Consensus       105 gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~---~l~~L~gH~-----~~V~sLafsP~dg~lLaSgS~DGtVrI  176 (767)
                      .|+--|.++.|+.|...++++ .|-.|.+|+++-..   .+..++.|.     .-|++..|+|...+.+...+..|+|++
T Consensus       170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl  248 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL  248 (460)
T ss_pred             cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence            466678899999999888876 46789999986432   234445554     458899999988889999999999999


Q ss_pred             EECCCCeEE----Eee-------------cCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecC-----
Q 004217          177 WNASTAECI----GSR-------------DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRT-----  234 (767)
Q Consensus       177 WDl~tg~~i----~~l-------------~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h-----  234 (767)
                      -|++.....    +.+             +....|..+.|+++|+++++-..-.|+|||++..+...  ....-|     
T Consensus       249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pi--kTi~~h~~l~~  326 (460)
T COG5170         249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPI--KTIPMHCDLMD  326 (460)
T ss_pred             hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCc--eeechHHHHHH
Confidence            999843221    111             12346788999999999998888889999998776422  222222     


Q ss_pred             -------CCCe---EEEEEccCCCeEEEEE
Q 004217          235 -------RRSL---RAVHFHPHAAPLLLTA  254 (767)
Q Consensus       235 -------~~~V---tsVaFSPDG~~LlaSg  254 (767)
                             .+.|   ..+.||.|.+.+++++
T Consensus       327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgs  356 (460)
T COG5170         327 ELNDVYENDAIFDKFEISFSGDDKHVLSGS  356 (460)
T ss_pred             HHHhhhhccceeeeEEEEecCCcccccccc
Confidence                   1222   3577888887665544

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.66  E-value=0.00027  Score=80.20  Aligned_cols=137  Identities=14%  Similarity=0.175  Sum_probs=102.9

Q ss_pred             CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeC-----------CCeEEEE
Q 004217          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-----------DHEVRLW  177 (767)
Q Consensus       109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~-----------DGtVrIW  177 (767)
                      .-+-+.|||-|.+|++-..-| |.+|--.+-..++.|. |.+ |.-+.||| +.++|+|=+.           ...++||
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IW  287 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIW  287 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEE
Confidence            356799999999999988765 7889765555566664 654 78899999 9999999542           2579999


Q ss_pred             ECCCCeEEEeecC---CCCe-EEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217          178 NASTAECIGSRDF---YRPI-ASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       178 Dl~tg~~i~~l~h---~~~V-tsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla  252 (767)
                      |+++|...+.+..   ...+ .-..||-|++|+|--..++|.||+......+.   ...-.-..|....|+|.+..|+.
T Consensus       288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld---~Kslki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLD---KKSLKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             EccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeec---ccccCCccccCcccCCCcceEEE
Confidence            9999998887642   2222 24679999999999888999999987654333   11112467889999999886553

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.63  E-value=0.0027  Score=73.15  Aligned_cols=113  Identities=14%  Similarity=0.162  Sum_probs=82.1

Q ss_pred             CeEEEEECC-CCCeEEEE----eCCCe----EEEEECCCCeEE--EE-EccCCCCcEEEEEccCCCcEEEEEeCCCeEEE
Q 004217          109 STIAAAFSP-DGKTLAST----HGDHT----VKIIDCQTGSCL--KV-LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (767)
Q Consensus       109 sVtsVaFSp-DG~~LASg----s~DGt----VrVWDl~tg~~l--~~-L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrI  176 (767)
                      ...++.||. +...+.+.    +.+|.    -.+|++..++..  .. --..+..|.+++++| +.+.++.|+.||+|.+
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIIL  285 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEE
Confidence            457888887 55555543    22343    346776654421  11 124678899999999 9999999999999999


Q ss_pred             EECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCc
Q 004217          177 WNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMRE  223 (767)
Q Consensus       177 WDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~  223 (767)
                      ||...+..... ...-..+.++|||+|.++++|++.+ +.+||+.-..
T Consensus       286 yD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  286 YDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            99987644333 4456678999999999999999755 9999987553

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.62  E-value=0.0069  Score=65.87  Aligned_cols=170  Identities=17%  Similarity=0.161  Sum_probs=115.6

Q ss_pred             EEcCCCEEEEE-----eCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCeEEEEeC------------------C
Q 004217           77 GRDARRGLASW-----VEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHG------------------D  128 (767)
Q Consensus        77 ~sd~g~~LaSg-----s~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSpDG~~LASgs~------------------D  128 (767)
                      ++.+|+.|++-     ...|.|-+||....     ++..|.-.-..+.+.|||+.|+.+-.                  +
T Consensus        58 fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~  137 (305)
T PF07433_consen   58 FSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQ  137 (305)
T ss_pred             EcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcC
Confidence            45677777765     34667999999832     56677777889999999988887632                  2


Q ss_pred             CeEEEEECCCCeEEEE--E--ccCCCCcEEEEEccCCCcEEEEEeCCCe-------EEEEECCCCeEEEee--------c
Q 004217          129 HTVKIIDCQTGSCLKV--L--HGHRRTPWVVRFHPLNPTIIASGSLDHE-------VRLWNASTAECIGSR--------D  189 (767)
Q Consensus       129 GtVrVWDl~tg~~l~~--L--~gH~~~V~sLafsP~dg~lLaSgS~DGt-------VrIWDl~tg~~i~~l--------~  189 (767)
                      -.+-..|..+|+.+.+  +  .-|+-.|..+++.+ ++..++..-..+.       |-+++-  ++.+..+        .
T Consensus       138 psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~  214 (305)
T PF07433_consen  138 PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRR  214 (305)
T ss_pred             CceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHh
Confidence            2355567788887766  4  34777899999998 7666665544332       333332  3322222        2


Q ss_pred             CCCCeEEEEEcCCCCEEEEEE--CCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          190 FYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       190 h~~~VtsVafSPdG~~LAsgS--dd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ....+-+|+++++|.++++++  .+.+.+||..++..+.     ...-..+..|+-.+++ ++++++.
T Consensus       215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~-----~~~l~D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLG-----SVPLPDACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEee-----ccccCceeeeeecCCc-eEEeCCC
Confidence            457899999999999999988  3459999999987644     1223456777777777 4555543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.62  E-value=0.00015  Score=83.90  Aligned_cols=142  Identities=12%  Similarity=0.156  Sum_probs=105.2

Q ss_pred             CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe---------------EEEEEccCCCCcEEEEEccCCCcEEEEEeC
Q 004217          106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSL  170 (767)
Q Consensus       106 H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~---------------~l~~L~gH~~~V~sLafsP~dg~lLaSgS~  170 (767)
                      ......|++|+....+||+|+.||.++|..+.+..               .-+++.||.+.|..+.|+. +.+.|-+...
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt   91 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDT   91 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCC
Confidence            34568899999999999999999999999875421               2256789999999999998 7888999999


Q ss_pred             CCeEEEEECCCCeEEEee---cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccC
Q 004217          171 DHEVRLWNASTAECIGSR---DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH  246 (767)
Q Consensus       171 DGtVrIWDl~tg~~i~~l---~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPD  246 (767)
                      +|-|.+|-+-++......   ..++.|.+++|..+|+.+.....|+ |.|=.++......  ..+.  ......+.|++|
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwg--KeLk--g~~l~hv~ws~D  167 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWG--KELK--GQLLAHVLWSED  167 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecc--hhcc--hheccceeeccc
Confidence            999999999888765442   3567789999999999888887665 5444443322111  0111  122347889998


Q ss_pred             CCeEEE
Q 004217          247 AAPLLL  252 (767)
Q Consensus       247 G~~Lla  252 (767)
                      .+.++.
T Consensus       168 ~~~~Lf  173 (1189)
T KOG2041|consen  168 LEQALF  173 (1189)
T ss_pred             HHHHHh
Confidence            876554

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.61  E-value=0.0011  Score=71.97  Aligned_cols=151  Identities=14%  Similarity=0.213  Sum_probs=115.8

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEEC-------
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC-------  136 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~--------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl-------  136 (767)
                      ..+.........|+.|-..+++.-+.....        ....|...|..+-|+....++++.+.|..+. |..       
T Consensus        71 ~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~l  149 (404)
T KOG1409|consen   71 CSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRL  149 (404)
T ss_pred             ceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcc
Confidence            556667778899999999999988776432        3457999999999998888888888775432 221       


Q ss_pred             -----------------------------------CCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC
Q 004217          137 -----------------------------------QTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (767)
Q Consensus       137 -----------------------------------~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t  181 (767)
                                                         ..-..+.++.+|.+.+.++.|.+ ...++++|..|..|.+||+.-
T Consensus       150 g~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg  228 (404)
T KOG1409|consen  150 GGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGG  228 (404)
T ss_pred             cceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccC
Confidence                                               11124556789999999999999 889999999999999999975


Q ss_pred             CeE--EEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCcc
Q 004217          182 AEC--IGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE  224 (767)
Q Consensus       182 g~~--i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~  224 (767)
                      .+-  .....|...|..+..-+.-+.+.+++.|+ |.+||++....
T Consensus       229 ~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  229 RKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV  274 (404)
T ss_pred             CcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence            443  33456888888888877777777777554 99999986543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.60  E-value=0.00026  Score=82.40  Aligned_cols=168  Identities=15%  Similarity=0.210  Sum_probs=112.8

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCC--CCeEEEEECCCC---CeEEEEeCCCeEEEEECCCC---eEE
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPP--RSTIAAAFSPDG---KTLASTHGDHTVKIIDCQTG---SCL  142 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~--~sVtsVaFSpDG---~~LASgs~DGtVrVWDl~tg---~~l  142 (767)
                      +.+...|+.++.++.-| +.+.|+...    ...-|.  -.|-.+.||+..   .++++.+ ...-.||++...   ..-
T Consensus        30 ~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~aIe  107 (1081)
T KOG0309|consen   30 VSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSNAIE  107 (1081)
T ss_pred             eeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhhhcCCccceE
Confidence            33445666666665544 334444332    122232  347788888833   2455544 456678998642   334


Q ss_pred             EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe-EEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEc
Q 004217          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRY  219 (767)
Q Consensus       143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~-~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl  219 (767)
                      ..+.||+..|+.+-|+|.+...+++++.|-.|..||+++.. .+..+. -......|+|+-....+.+.+.++ |++||+
T Consensus       108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~  187 (1081)
T KOG0309|consen  108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL  187 (1081)
T ss_pred             EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence            56689999999999999899999999999999999999854 333322 345567789987665555555444 999999


Q ss_pred             CCCccccCCeEEecCCCCeEEEEEccC
Q 004217          220 NMREETSSPRIVLRTRRSLRAVHFHPH  246 (767)
Q Consensus       220 ~t~~~~~~~~~l~~h~~~VtsVaFSPD  246 (767)
                      +.+...  ...+.+|...|+.++|..-
T Consensus       188 r~gs~p--l~s~K~~vs~vn~~~fnr~  212 (1081)
T KOG0309|consen  188 RKGSTP--LCSLKGHVSSVNSIDFNRF  212 (1081)
T ss_pred             cCCCcc--eEEecccceeeehHHHhhh
Confidence            987652  2456678888888888754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.59  E-value=0.026  Score=58.93  Aligned_cols=173  Identities=15%  Similarity=0.129  Sum_probs=107.9

Q ss_pred             EEEEEcCCCEEEEEeCCCeEEEEeCCCCCC--------CC-CCCCeEEEEECCCCCeEEEEeCC--------CeEEEEEC
Q 004217           74 FEAGRDARRGLASWVEAESLHHLRPKYCPL--------SP-PPRSTIAAAFSPDGKTLASTHGD--------HTVKIIDC  136 (767)
Q Consensus        74 ~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L--------~g-H~~sVtsVaFSpDG~~LASgs~D--------GtVrVWDl  136 (767)
                      -+++...+..++.+...+ +.++|..++++        .. .....+++++.++|++.++....        |.|..++.
T Consensus        44 G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~  122 (246)
T PF08450_consen   44 GMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP  122 (246)
T ss_dssp             EEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET
T ss_pred             eEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC
Confidence            344442335555555544 45558777621        12 34568899999999977776543        56777887


Q ss_pred             CCCeEEEEEccCCCCcEEEEEccCCCc-EEEEEeCCCeEEEEECCCCe--EE--Ee---ecCC-CCeEEEEEcCCCCEEE
Q 004217          137 QTGSCLKVLHGHRRTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAE--CI--GS---RDFY-RPIASIAFHASGELLA  207 (767)
Q Consensus       137 ~tg~~l~~L~gH~~~V~sLafsP~dg~-lLaSgS~DGtVrIWDl~tg~--~i--~~---l~h~-~~VtsVafSPdG~~LA  207 (767)
                      . ++...... .-.....|+|+| +++ ++++-+..+.|..+|+....  ..  ..   +... +..-.++++.+|++.+
T Consensus       123 ~-~~~~~~~~-~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~v  199 (246)
T PF08450_consen  123 D-GKVTVVAD-GLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWV  199 (246)
T ss_dssp             T-SEEEEEEE-EESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEE
T ss_pred             C-CeEEEEec-CcccccceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEE
Confidence            7 55443333 345678999999 666 45577788999999986322  11  11   2222 2477899999998766


Q ss_pred             EEE-CCcEEEEEcCCCccccCCeEEecCCCCeEEEEEc-cCCCeEEEEE
Q 004217          208 VAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFH-PHAAPLLLTA  254 (767)
Q Consensus       208 sgS-dd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFS-PDG~~LlaSg  254 (767)
                      +.. .++|.++|.+ ++.+.   .+.-....+++++|. ++.+.|++|.
T Consensus       200 a~~~~~~I~~~~p~-G~~~~---~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  200 ADWGGGRIVVFDPD-GKLLR---EIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEETTTEEEEEETT-SCEEE---EEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             EEcCCCEEEEECCC-ccEEE---EEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            655 4569999987 55433   233334589999994 6767676654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.53  E-value=0.019  Score=65.69  Aligned_cols=265  Identities=17%  Similarity=0.163  Sum_probs=157.0

Q ss_pred             eeecccccceecCCc---ceEEEEEEcCCCEEEEEeC-----------CCeEEEEeCCCCCCC-------CCCCCeEEEE
Q 004217           56 KRLLGETARKCSGSF---SQIFEAGRDARRGLASWVE-----------AESLHHLRPKYCPLS-------PPPRSTIAAA  114 (767)
Q Consensus        56 k~~wd~~~~~~~~s~---s~~~vA~sd~g~~LaSgs~-----------DgsIrlWd~~t~~L~-------gH~~sVtsVa  114 (767)
                      ..+|+.........|   .+..+-++..-++|++++.           ...+.+||+.++.++       +....-.-..
T Consensus       233 I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~fr  312 (698)
T KOG2314|consen  233 IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFR  312 (698)
T ss_pred             eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEE
Confidence            345655443332222   3666778888899998863           256899999998433       1112233578


Q ss_pred             ECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeC-----CCeEEEEECCCCeEEEeec
Q 004217          115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-----DHEVRLWNASTAECIGSRD  189 (767)
Q Consensus       115 FSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~-----DGtVrIWDl~tg~~i~~l~  189 (767)
                      ||.|++++|.-..| .|.||+..+-.++..-.-.-..|....|+| .+++||.=..     -..+.|-.+.+++.+++..
T Consensus       313 WS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n  390 (698)
T KOG2314|consen  313 WSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN  390 (698)
T ss_pred             eccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeecc
Confidence            99999999987764 799998776433321111235678889999 7787776432     2457777777777776643


Q ss_pred             -CCCCeEEEEEcCCCCEEEEEEC--------C---cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 004217          190 -FYRPIASIAFHASGELLAVASG--------H---KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN  257 (767)
Q Consensus       190 -h~~~VtsVafSPdG~~LAsgSd--------d---~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvw  257 (767)
                       ++-.-..+-|-.+|.+|++--+        +   .+.|+.++....   +.....-...|...+|-|.|+.+++-..- 
T Consensus       391 lfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI---pve~velke~vi~FaWEP~gdkF~vi~g~-  466 (698)
T KOG2314|consen  391 LFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI---PVEVVELKESVIAFAWEPHGDKFAVISGN-  466 (698)
T ss_pred             ceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC---CceeeecchheeeeeeccCCCeEEEEEcc-
Confidence             2222234667788888876532        1   167777776654   22455567889999999999976654321 


Q ss_pred             CcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccc
Q 004217          258 DLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLR  337 (767)
Q Consensus       258 dl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~  337 (767)
                      +....-....+.+                  .+....|......  -.+..+.|+|.|+.+++..-              
T Consensus       467 ~~k~tvsfY~~e~------------------~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l--------------  512 (698)
T KOG2314|consen  467 TVKNTVSFYAVET------------------NIKKPSLVKELDK--KFANTVFWSPKGRFVVVAAL--------------  512 (698)
T ss_pred             ccccceeEEEeec------------------CCCchhhhhhhcc--cccceEEEcCCCcEEEEEEe--------------
Confidence            1110000000110                  0001111111110  12236889999999998221              


Q ss_pred             cCCceeeeeccCCCCceeeeecc
Q 004217          338 SSSSVRLLTYSTPSGQYELVLSP  360 (767)
Q Consensus       338 ss~~~~l~~~~~~~~q~~~~~~p  360 (767)
                      .|.+..|.|||..-.....+-+|
T Consensus       513 ~s~~g~l~F~D~~~a~~k~~~~~  535 (698)
T KOG2314|consen  513 VSRRGDLEFYDTDYADLKDTASP  535 (698)
T ss_pred             cccccceEEEecchhhhhhccCc
Confidence            12566799999986555444443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.52  E-value=0.0015  Score=73.70  Aligned_cols=152  Identities=10%  Similarity=0.134  Sum_probs=107.3

Q ss_pred             CeEEEEeCCCCCCC---CCCCCeEEEEECCCCCeEEEEe--CCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEE
Q 004217           91 ESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTH--GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (767)
Q Consensus        91 gsIrlWd~~t~~L~---gH~~sVtsVaFSpDG~~LASgs--~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lL  165 (767)
                      ..+.++++....+.   +-.++|...+|+|+++.+++.+  .+-.+.++|++.. ....+.  ...=..+-|+| ..+++
T Consensus       255 snLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp-~~r~i  330 (561)
T COG5354         255 SNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSP-HERYI  330 (561)
T ss_pred             ceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC--CcccccccccC-cccEE
Confidence            34566666544222   5588999999999888876655  5788999998865 343332  33345578999 88888


Q ss_pred             EEEeCC---CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE-------CCcEEEEEcCCCccccCCeEEecCC
Q 004217          166 ASGSLD---HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-------GHKLYIWRYNMREETSSPRIVLRTR  235 (767)
Q Consensus       166 aSgS~D---GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS-------dd~V~VWDl~t~~~~~~~~~l~~h~  235 (767)
                      +.++-|   |.+-+||......+...-.......+.|+|+|+++.+..       |+.|.|||+......          
T Consensus       331 l~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f----------  400 (561)
T COG5354         331 LFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF----------  400 (561)
T ss_pred             EEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh----------
Confidence            887655   679999988765554222223345568999999887765       234999998766531          


Q ss_pred             CCeEEEEEccCCCeEEEEEeeC
Q 004217          236 RSLRAVHFHPHAAPLLLTAEVN  257 (767)
Q Consensus       236 ~~VtsVaFSPDG~~LlaSgsvw  257 (767)
                       ..+.+.|.|.|++..+++..|
T Consensus       401 -el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         401 -ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             -hhhhccccCCcccceeeccCC
Confidence             467888999999877777666

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.50  E-value=0.012  Score=73.23  Aligned_cols=179  Identities=13%  Similarity=0.179  Sum_probs=117.0

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEE----eCCCCC--C-CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECC-------
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHL----RPKYCP--L-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ-------  137 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlW----d~~t~~--L-~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~-------  137 (767)
                      .+.+..-.+...++.+..+|.|-+.    +.....  . ..-..+|.+++||||+.+|+....+++|.+.+..       
T Consensus        78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~  157 (928)
T PF04762_consen   78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEV  157 (928)
T ss_pred             EEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEe
Confidence            4444455566677777788888888    544432  2 2345689999999999999999999888876420       


Q ss_pred             --------C--------CeEEEEEcc------------------------CCCCcEEEEEccCCCcEEEEEeC---C---
Q 004217          138 --------T--------GSCLKVLHG------------------------HRRTPWVVRFHPLNPTIIASGSL---D---  171 (767)
Q Consensus       138 --------t--------g~~l~~L~g------------------------H~~~V~sLafsP~dg~lLaSgS~---D---  171 (767)
                              .        |+.-.+|+|                        +...-..|+|-. |+.+|+..+.   +   
T Consensus       158 ~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~  236 (928)
T PF04762_consen  158 PLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSR  236 (928)
T ss_pred             ecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCce
Confidence                    0        111111211                        112334688988 8999988775   2   


Q ss_pred             CeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEEC--Cc--EEEEEcCCCccccCCeEEe--cCCCCeEEEEEc
Q 004217          172 HEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HK--LYIWRYNMREETSSPRIVL--RTRRSLRAVHFH  244 (767)
Q Consensus       172 GtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSd--d~--V~VWDl~t~~~~~~~~~l~--~h~~~VtsVaFS  244 (767)
                      ..+|+|+-. |+....-+ -.+--.+++|-|.|++||+...  ++  |.+|.-+..+...  +.+.  .....|..+.|+
T Consensus       237 R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge--F~l~~~~~~~~v~~l~Wn  313 (928)
T PF04762_consen  237 RVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGE--FTLRFDPEEEKVIELAWN  313 (928)
T ss_pred             eEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeee--EecCCCCCCceeeEEEEC
Confidence            479999865 65544433 2223357899999999999873  33  8888755433322  2222  345689999999


Q ss_pred             cCCCeEEEEE
Q 004217          245 PHAAPLLLTA  254 (767)
Q Consensus       245 PDG~~LlaSg  254 (767)
                      +|+..|++..
T Consensus       314 ~ds~iLAv~~  323 (928)
T PF04762_consen  314 SDSEILAVWL  323 (928)
T ss_pred             CCCCEEEEEe
Confidence            9999777644

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.49  E-value=0.00025  Score=76.71  Aligned_cols=112  Identities=12%  Similarity=0.108  Sum_probs=91.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeE---EEEEcc
Q 004217           80 ARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSC---LKVLHG  147 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~--------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~---l~~L~g  147 (767)
                      .+..++.|...|.|...|+..+        +..-|..+|+++..-. ++++|.+.+.+|+|++||++--++   +.++.|
T Consensus       263 s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG  342 (425)
T KOG2695|consen  263 SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG  342 (425)
T ss_pred             cCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeec
Confidence            4677889999999999999765        1235888999988777 788999999999999999987666   889999


Q ss_pred             CCCCcEE--EEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCC
Q 004217          148 HRRTPWV--VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR  192 (767)
Q Consensus       148 H~~~V~s--LafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~  192 (767)
                      |-..-.-  +-.++ ....+++++.|...|||.++.+..+.++....
T Consensus       343 HvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  343 HVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             cccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence            9654333  33456 66788899999999999999999999877544

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.47  E-value=0.00072  Score=80.48  Aligned_cols=142  Identities=17%  Similarity=0.167  Sum_probs=112.6

Q ss_pred             EEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeC---------CCeEEEEECCCCe
Q 004217           74 FEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHG---------DHTVKIIDCQTGS  140 (767)
Q Consensus        74 ~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~---------DGtVrVWDl~tg~  140 (767)
                      +...+.+++.+.+|...|+|.+-|.++.    ++..|++.|.+++..  |++|++|+.         |.-|+|||++..+
T Consensus       180 v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr  257 (1118)
T KOG1275|consen  180 VTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMR  257 (1118)
T ss_pred             eEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhh
Confidence            4556678899999999999999999886    578999999887775  889999986         5669999999877


Q ss_pred             EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC---CCe-EEEee-cCCCCeEEEEEcCCCCEEEEEECC-cE
Q 004217          141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS---TAE-CIGSR-DFYRPIASIAFHASGELLAVASGH-KL  214 (767)
Q Consensus       141 ~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~---tg~-~i~~l-~h~~~VtsVafSPdG~~LAsgSdd-~V  214 (767)
                      .+.-+.-+.++ .-++|+|.-...++.++..|.+.+-|..   +.. -+..+ .....+..++++++|+.+|.|... .|
T Consensus       258 al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v  336 (1118)
T KOG1275|consen  258 ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV  336 (1118)
T ss_pred             ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence            77666655554 4588999778889999999999999933   321 12222 244559999999999999999854 49


Q ss_pred             EEEE
Q 004217          215 YIWR  218 (767)
Q Consensus       215 ~VWD  218 (767)
                      .+|-
T Consensus       337 ~~wa  340 (1118)
T KOG1275|consen  337 NLWA  340 (1118)
T ss_pred             eeec
Confidence            9996

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.41  E-value=0.00096  Score=78.25  Aligned_cols=133  Identities=19%  Similarity=0.274  Sum_probs=101.0

Q ss_pred             CCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCC-----------CcEEEEEeCCCeEEE
Q 004217          108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLN-----------PTIIASGSLDHEVRL  176 (767)
Q Consensus       108 ~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~d-----------g~lLaSgS~DGtVrI  176 (767)
                      ..-.+++|+|.| +||.|+.. .|.|.|..+-+.+..+.-|+..|+.+.|.|..           .-+|+++...|.|.+
T Consensus        16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil   93 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL   93 (1062)
T ss_pred             ccccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence            346789999876 77877764 79999999999999999999999999998831           236778888899999


Q ss_pred             EECCCCeEEEeec-CCCCeEEEEEcCC---CC-EE-EEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEcc
Q 004217          177 WNASTAECIGSRD-FYRPIASIAFHAS---GE-LL-AVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHP  245 (767)
Q Consensus       177 WDl~tg~~i~~l~-h~~~VtsVafSPd---G~-~L-AsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSP  245 (767)
                      ||...+..+..+. +.+++..++|-+.   .+ +| |.-+...|.+|+..+++..+   ..........++.+.|
T Consensus        94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W---k~~ys~~iLs~f~~DP  165 (1062)
T KOG1912|consen   94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW---KYDYSHEILSCFRVDP  165 (1062)
T ss_pred             EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee---ccccCCcceeeeeeCC
Confidence            9999988887776 5678888888763   33 33 33344559999999998765   2222334556677777

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.40  E-value=0.055  Score=57.86  Aligned_cols=230  Identities=18%  Similarity=0.165  Sum_probs=127.6

Q ss_pred             EEECCCCCeEEEEeCCCeEEEEECCCC--eEEEEEccCC---CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe
Q 004217          113 AAFSPDGKTLASTHGDHTVKIIDCQTG--SCLKVLHGHR---RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS  187 (767)
Q Consensus       113 VaFSpDG~~LASgs~DGtVrVWDl~tg--~~l~~L~gH~---~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~  187 (767)
                      ++.+.||++||.. .|..|.|-..++.  ..+.+..-.+   ..=..++|+| |+.+|+.+...|+|++||+...++...
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELFVI   80 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeEEc
Confidence            5677899988875 4567777765542  2333333222   2346799999 999999999999999999986544322


Q ss_pred             e-------cCCCCeEEEEEcCCC-------CEEEEEECCcEEEEEcCCC--ccccC--CeEE-ecCCCCeEEEEEccCCC
Q 004217          188 R-------DFYRPIASIAFHASG-------ELLAVASGHKLYIWRYNMR--EETSS--PRIV-LRTRRSLRAVHFHPHAA  248 (767)
Q Consensus       188 l-------~h~~~VtsVafSPdG-------~~LAsgSdd~V~VWDl~t~--~~~~~--~~~l-~~h~~~VtsVaFSPDG~  248 (767)
                      -       .....|..+.|-+-.       ++|+....+.++-|-+..+  +.-..  ...+ ..+...|.++.++|..+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            1       134567777775532       3566666666666655322  11110  1112 22477999999999999


Q ss_pred             eEEEEEeeCCcC-----CCCcceeEeecCCCccCCCCeEEEecCC--CCCCCc--------eeeccCCCCCCceeeEEec
Q 004217          249 PLLLTAEVNDLD-----SSESSLTLATSPGYWRYPPPVICMAGAH--SSSHPG--------LAEEVPLITPPFLRPSFVR  313 (767)
Q Consensus       249 ~LlaSgsvwdl~-----s~~~~~~l~t~sG~~~~p~~~v~l~~~~--Ssd~~~--------L~sg~~~~slpil~psFSp  313 (767)
                      .|+++|...+-+     ..-.....+.++++-.|.. +....+.-  .+....        +........--++..+.||
T Consensus       161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP  239 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP  239 (282)
T ss_pred             EEEEeccCCCCCccccccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence            777766522211     0111222333333211100 00000000  000000        1111111122344789999


Q ss_pred             CCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeeccCC
Q 004217          314 DDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIA  362 (767)
Q Consensus       314 Dg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~p~~  362 (767)
                      ||..+++.|.                 +..+-+|+-++-...+-+...+
T Consensus       240 dg~~La~ih~-----------------sG~lsLW~iPsL~~~~~W~~~e  271 (282)
T PF15492_consen  240 DGSLLACIHF-----------------SGSLSLWEIPSLRLQRSWKQDE  271 (282)
T ss_pred             CCCEEEEEEc-----------------CCeEEEEecCcchhhcccchhh
Confidence            9999998554                 3457788888877777775444

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.39  E-value=0.014  Score=72.79  Aligned_cols=138  Identities=15%  Similarity=0.240  Sum_probs=92.2

Q ss_pred             CeEEEEECCCCCeEEEEeC---C---CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeC---CCeEEEEEC
Q 004217          109 STIAAAFSPDGKTLASTHG---D---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL---DHEVRLWNA  179 (767)
Q Consensus       109 sVtsVaFSpDG~~LASgs~---D---GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~---DGtVrIWDl  179 (767)
                      .-..|+|--||+++|+.+.   +   ..+|||+-+ |....+-..-.+--.+++|-| .++++++...   ...|.+|.-
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfEr  288 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFER  288 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEec
Confidence            4567899999999998765   2   579999955 764444443334445789999 8999998764   345666653


Q ss_pred             CCCeEEEee-----cCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCe
Q 004217          180 STAECIGSR-----DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAP  249 (767)
Q Consensus       180 ~tg~~i~~l-----~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~  249 (767)
                       +|-.-..+     .....|..+.|++|+..||+--.+.|.+|-..+-.--.+..........+..+.|+|....
T Consensus       289 -NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~  362 (928)
T PF04762_consen  289 -NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL  362 (928)
T ss_pred             -CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC
Confidence             33332222     2356789999999999999988888999987654311101112222344556999996543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.39  E-value=0.016  Score=65.78  Aligned_cols=261  Identities=13%  Similarity=0.095  Sum_probs=155.0

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-CC-CCCCCCeEEEEECCCCCeEEEEeCC---------------CeEEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-PL-SPPPRSTIAAAFSPDGKTLASTHGD---------------HTVKII  134 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-~L-~gH~~sVtsVaFSpDG~~LASgs~D---------------GtVrVW  134 (767)
                      ...+..+..|..|++.... .|.+|..... ++ .-....|..+.|||.+++|.+=+..               ..+.||
T Consensus        35 ~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vw  113 (561)
T COG5354          35 VAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVW  113 (561)
T ss_pred             hhheeecCcchheehhhcc-ceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEE
Confidence            3344455677777766433 4777776554 21 1233459999999999999885542               359999


Q ss_pred             ECCCCeEEEEEccCCCC--cE-EEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ec--CCCCeEEEEEcCCCC--EE
Q 004217          135 DCQTGSCLKVLHGHRRT--PW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RD--FYRPIASIAFHASGE--LL  206 (767)
Q Consensus       135 Dl~tg~~l~~L~gH~~~--V~-sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~--h~~~VtsVafSPdG~--~L  206 (767)
                      |+.+|..+..+.+...+  .+ -+.|+- +.++++-. ....++|+++ ++..... +.  ....|....|+|.|+  .|
T Consensus       114 d~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~l  190 (561)
T COG5354         114 DIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDEL  190 (561)
T ss_pred             eccCceeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceE
Confidence            99999999998876665  55 678888 66666655 4456999997 4333211 11  135678888999764  33


Q ss_pred             EEEE------CCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCC
Q 004217          207 AVAS------GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPP  280 (767)
Q Consensus       207 AsgS------dd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~  280 (767)
                      |.=.      ...+++|.+.....+... .+.  .-.-..+.|++.|++|++-..... .+..           ..|-..
T Consensus       191 a~~tPEk~~kpa~~~i~sIp~~s~l~tk-~lf--k~~~~qLkW~~~g~~ll~l~~t~~-ksnK-----------syfges  255 (561)
T COG5354         191 AYWTPEKLNKPAMVRILSIPKNSVLVTK-NLF--KVSGVQLKWQVLGKYLLVLVMTHT-KSNK-----------SYFGES  255 (561)
T ss_pred             EEEccccCCCCcEEEEEEccCCCeeeee-eeE--eecccEEEEecCCceEEEEEEEee-eccc-----------ceeccc
Confidence            3322      123999998865544411 111  122347889999998876432111 1111           111112


Q ss_pred             eEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeecc
Q 004217          281 VICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSP  360 (767)
Q Consensus       281 ~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~p  360 (767)
                      -+.+-.....+   +.... +...|+...+|.|++++..+-++-.++.......+     + .+.+|-+++.++...++|
T Consensus       256 nLyl~~~~e~~---i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr-----~-Nl~~~~Pe~~rNT~~fsp  325 (561)
T COG5354         256 NLYLLRITERS---IPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR-----G-NLRFYFPEQKRNTIFFSP  325 (561)
T ss_pred             eEEEEeecccc---cceec-cccccceeeeecccCCceeEEecccccceeecccc-----c-ceEEecCCcccccccccC
Confidence            23332222111   11111 34558888999999999888665555444333322     1 267777777777666655


Q ss_pred             C
Q 004217          361 I  361 (767)
Q Consensus       361 ~  361 (767)
                      .
T Consensus       326 ~  326 (561)
T COG5354         326 H  326 (561)
T ss_pred             c
Confidence            3

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.38  E-value=0.00039  Score=72.90  Aligned_cols=143  Identities=15%  Similarity=0.121  Sum_probs=93.5

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCCCCCCCC-----eEEEEECCCCCeEEEEeC-----CCeEEEEECCCCeEEEEEccC
Q 004217           79 DARRGLASWVEAESLHHLRPKYCPLSPPPRS-----TIAAAFSPDGKTLASTHG-----DHTVKIIDCQTGSCLKVLHGH  148 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~~L~gH~~s-----VtsVaFSpDG~~LASgs~-----DGtVrVWDl~tg~~l~~L~gH  148 (767)
                      -.+..++++.+|+.+-+.+.+.-.-..|.-+     -.+.+.-..++.|.++.-     -+..++|+++..+.+..-+.-
T Consensus        99 ~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~  178 (319)
T KOG4714|consen   99 MTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA  178 (319)
T ss_pred             ccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccc
Confidence            3567788889999998888765211111111     112222223444444321     124556666543322211222


Q ss_pred             CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe--ecCCCCeEEEEEcCCC-CEEEEEECCc-EEEEEcCC
Q 004217          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFHASG-ELLAVASGHK-LYIWRYNM  221 (767)
Q Consensus       149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~--l~h~~~VtsVafSPdG-~~LAsgSdd~-V~VWDl~t  221 (767)
                      ...|.+++-+|...+++++|+.||.+-+||.+.......  ..|+.+++.+-|+|.. ..|++++.|+ +..||..+
T Consensus       179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            234999999997778889999999999999998755444  3489999999999954 6888888766 99999876

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.35  E-value=0.0022  Score=76.58  Aligned_cols=171  Identities=13%  Similarity=0.108  Sum_probs=118.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEE
Q 004217           80 ARRGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~~L~----gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sL  155 (767)
                      +...++-|.-...+-.+|+.+.+..    -....|.-++.  +++.|.+|...|+|.+-|..+.+.++++..|++.|..+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            3344444444445556676654321    11223555555  47899999999999999999999999999999999887


Q ss_pred             EEccCCCcEEEEEeC---------CCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCC-EEEEEE-CCcEEEEEcCCCcc
Q 004217          156 RFHPLNPTIIASGSL---------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGE-LLAVAS-GHKLYIWRYNMREE  224 (767)
Q Consensus       156 afsP~dg~lLaSgS~---------DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~-~LAsgS-dd~V~VWDl~t~~~  224 (767)
                      ..   .+++|++++.         |.-|++||++.-+.+.-+.......-+.|+|.-. .+++.+ .+...+-|..+-..
T Consensus       224 Dv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  224 DV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             ec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC
Confidence            76   5789999875         5678999999887776666554456678888653 444444 66688888433222


Q ss_pred             c-cCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          225 T-SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       225 ~-~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      . .....+......+.++++|++|+.|+.+-.
T Consensus       301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~  332 (1118)
T KOG1275|consen  301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDH  332 (1118)
T ss_pred             CccceeEEccCCCcceeEEecCCCceEEEecc
Confidence            1 112233334566999999999997777654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.35  E-value=0.013  Score=72.24  Aligned_cols=195  Identities=13%  Similarity=0.147  Sum_probs=121.7

Q ss_pred             eeecccccceecCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCC---CCCCCCeEEEEECCCCCeEEEEeCCCeEE
Q 004217           56 KRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPL---SPPPRSTIAAAFSPDGKTLASTHGDHTVK  132 (767)
Q Consensus        56 k~~wd~~~~~~~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L---~gH~~sVtsVaFSpDG~~LASgs~DGtVr  132 (767)
                      .++|......-+++...+.+.+.-++..+......|.|.+-|..+..+   ..-..+|.+++||||+++++..+.++++.
T Consensus        55 v~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll  134 (1265)
T KOG1920|consen   55 VRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLL  134 (1265)
T ss_pred             ccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEE
Confidence            344444433333443455566666777788888899998888887642   23456899999999999999998888877


Q ss_pred             EEEC----CC-------------------CeEEEEEccCC---------------------CCcEEEEEccCCCcEEEEE
Q 004217          133 IIDC----QT-------------------GSCLKVLHGHR---------------------RTPWVVRFHPLNPTIIASG  168 (767)
Q Consensus       133 VWDl----~t-------------------g~~l~~L~gH~---------------------~~V~sLafsP~dg~lLaSg  168 (767)
                      +-+-    -.                   |+....|+|..                     +.=..|.|-- |+++++..
T Consensus       135 ~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs  213 (1265)
T KOG1920|consen  135 FMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVS  213 (1265)
T ss_pred             EEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEE
Confidence            6542    00                   11111232111                     1123488887 88888873


Q ss_pred             e----CC-CeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEE----CCcEEEEEcCCCccccCCeEEecCCCCe
Q 004217          169 S----LD-HEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS----GHKLYIWRYNMREETSSPRIVLRTRRSL  238 (767)
Q Consensus       169 S----~D-GtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgS----dd~V~VWDl~t~~~~~~~~~l~~h~~~V  238 (767)
                      .    .+ ..|++||-. |..-.. ....+--.+++|-|.|.++++-.    ++.|.+|.-+.-....-..........|
T Consensus       214 ~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~v  292 (1265)
T KOG1920|consen  214 FVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEV  292 (1265)
T ss_pred             EEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccch
Confidence            2    23 789999977 433222 12233345799999999998875    3449998755433221001111123348


Q ss_pred             EEEEEccCCCeEEE
Q 004217          239 RAVHFHPHAAPLLL  252 (767)
Q Consensus       239 tsVaFSPDG~~Lla  252 (767)
                      ..++|+.++..|++
T Consensus       293 e~L~Wns~sdiLAv  306 (1265)
T KOG1920|consen  293 EELAWNSNSDILAV  306 (1265)
T ss_pred             heeeecCCCCceee
Confidence            99999999996655

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.33  E-value=0.0087  Score=68.38  Aligned_cols=161  Identities=15%  Similarity=0.149  Sum_probs=101.3

Q ss_pred             eEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEE-eCC---CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCE
Q 004217          130 TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG-SLD---HEVRLWNASTAECIGSRDFYRPIASIAFHASGEL  205 (767)
Q Consensus       130 tVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSg-S~D---GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~  205 (767)
                      .+.+-|.+ |.....+..-...+..-.|+| ++..++.. -..   ..+.++|+.+++........+.-...+|+|||+.
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~  251 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSK  251 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCE
Confidence            44454544 555555655556677788999 55544433 222   3599999999988877776777777899999998


Q ss_pred             EEEEEC--Cc--EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCe
Q 004217          206 LAVASG--HK--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPV  281 (767)
Q Consensus       206 LAsgSd--d~--V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~  281 (767)
                      |+....  +.  |+++|+..+...+    +....+.-..-.|+|||++++.+++.               .|+     +.
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~ivf~Sdr---------------~G~-----p~  307 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSKIVFTSDR---------------GGR-----PQ  307 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCEEEEEeCC---------------CCC-----cc
Confidence            888873  33  9999998877322    33333333478899999999888531               111     12


Q ss_pred             EEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEE
Q 004217          282 ICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (767)
Q Consensus       282 v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva  320 (767)
                      +++.+...+....+.....    ....|.+||||++|+.
T Consensus       308 I~~~~~~g~~~~riT~~~~----~~~~p~~SpdG~~i~~  342 (425)
T COG0823         308 IYLYDLEGSQVTRLTFSGG----GNSNPVWSPDGDKIVF  342 (425)
T ss_pred             eEEECCCCCceeEeeccCC----CCcCccCCCCCCEEEE
Confidence            3333333322222221111    1117889999999998

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.31  E-value=0.0033  Score=72.43  Aligned_cols=75  Identities=25%  Similarity=0.413  Sum_probs=64.1

Q ss_pred             CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC
Q 004217          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA  182 (767)
Q Consensus       105 gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg  182 (767)
                      ..+..|.+++++|+.+.|+.|+.||.|.+||...+...  +....-.+..++||| ++.+++.|+..|.+.+||+.-.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence            56778999999999999999999999999998776433  333445678999999 9999999999999999998744

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.27  E-value=0.0029  Score=74.76  Aligned_cols=135  Identities=19%  Similarity=0.202  Sum_probs=100.8

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEE
Q 004217          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG  186 (767)
Q Consensus       107 ~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~  186 (767)
                      ...++|++++  ++.|+.|..+|.|++++... .. .+...|...      .- ++.+++||+.||+|.|-.+-+.+...
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccce
Confidence            3457777776  68999999999999999763 33 344445544      33 79999999999999999999999999


Q ss_pred             eecCCCCeEEEEEcCC-----CCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          187 SRDFYRPIASIAFHAS-----GELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       187 ~l~h~~~VtsVafSPd-----G~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .+....++.+++++|+     .+.+++|+..++.++.-+-..... ........+.|.++.|.  |.+++.+..
T Consensus       108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~-~v~l~~~eG~I~~i~W~--g~lIAWand  178 (846)
T KOG2066|consen  108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKD-SVVLSEGEGPIHSIKWR--GNLIAWAND  178 (846)
T ss_pred             eEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCcc-ceeeecCccceEEEEec--CcEEEEecC
Confidence            9999999999999998     346777776557777644332211 12345567899999996  666665543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.23  E-value=0.0026  Score=72.61  Aligned_cols=147  Identities=17%  Similarity=0.217  Sum_probs=96.2

Q ss_pred             CCCCCCCeEEEEECCCCCeEEEEeC---C-CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCe--EEE
Q 004217          103 LSPPPRSTIAAAFSPDGKTLASTHG---D-HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE--VRL  176 (767)
Q Consensus       103 L~gH~~sVtsVaFSpDG~~LASgs~---D-GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGt--VrI  176 (767)
                      +..-...+..-+|+|+++.++....   . ..+.++|+++++....+. -.+.-...+|+|++..++++...|+.  |.+
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~  266 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL  266 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence            3344556788899999998765532   2 369999999887544443 22233456899955556666677776  455


Q ss_pred             EECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc----EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217          177 WNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK----LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       177 WDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~----V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla  252 (767)
                      .|+.+++..+.....+.-..-.|+|||++|+..++..    |.++|.+.....+    +......-..-.|+|||++|+.
T Consensus       267 ~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r----iT~~~~~~~~p~~SpdG~~i~~  342 (425)
T COG0823         267 MDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR----LTFSGGGNSNPVWSPDGDKIVF  342 (425)
T ss_pred             EcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE----eeccCCCCcCccCCCCCCEEEE
Confidence            5777776444222233334677999999998888633    8888887776522    2222222227889999999887


Q ss_pred             EE
Q 004217          253 TA  254 (767)
Q Consensus       253 Sg  254 (767)
                      ..
T Consensus       343 ~~  344 (425)
T COG0823         343 ES  344 (425)
T ss_pred             Ee
Confidence            76

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.0021  Score=70.96  Aligned_cols=94  Identities=15%  Similarity=0.230  Sum_probs=78.1

Q ss_pred             EEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEE-EEE
Q 004217          131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELL-AVA  209 (767)
Q Consensus       131 VrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~L-Asg  209 (767)
                      |++.+..+.+....+.+|...|..++|+|.+..++..++.+.+|+|.|+++..++..+.....+++++|+-|...+ ..|
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence            6777766666666778889999999999966668999999999999999999999888877999999999988754 444


Q ss_pred             ECCc-EEEEEcCCCcc
Q 004217          210 SGHK-LYIWRYNMREE  224 (767)
Q Consensus       210 Sdd~-V~VWDl~t~~~  224 (767)
                      -.++ |.|||++..+.
T Consensus       255 l~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  255 LQNGMVLVYDMRQPEG  270 (463)
T ss_pred             ccCceEEEEEccCCCc
Confidence            4444 99999997654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.21  E-value=0.036  Score=66.42  Aligned_cols=179  Identities=15%  Similarity=0.133  Sum_probs=122.5

Q ss_pred             EEEEEcCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCC-eEEEEECCCCCeEEEEeCCC-----eEEEEECCCC-----
Q 004217           74 FEAGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRS-TIAAAFSPDGKTLASTHGDH-----TVKIIDCQTG-----  139 (767)
Q Consensus        74 ~vA~sd~g~~LaSgs~DgsIrlWd~~t~---~L~gH~~s-VtsVaFSpDG~~LASgs~DG-----tVrVWDl~tg-----  139 (767)
                      ...++.++..++.|+.+|.|.+.+-...   .++.+... |.-+-.-.+..+|++.+.|+     .|+|||++.-     
T Consensus        28 isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   28 ISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             eeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            3445678899999999999988876543   35566666 44444433446888877765     4999998642     


Q ss_pred             -eEE--EEEcc-----CCCCcEEEEEccCCCcEEEEEeCCCeEEEEEC--CCCe---EEEeecCCCCeEEEEEcCCCCE-
Q 004217          140 -SCL--KVLHG-----HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA--STAE---CIGSRDFYRPIASIAFHASGEL-  205 (767)
Q Consensus       140 -~~l--~~L~g-----H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl--~tg~---~i~~l~h~~~VtsVafSPdG~~-  205 (767)
                       .++  +.+.+     ...++.+++.+. +-+.++.|-.||.|..+.-  ...+   .........+|+.+++..+++. 
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~  186 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV  186 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence             233  22222     245678899998 7899999999999999842  2111   1112345789999999999986 


Q ss_pred             EEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          206 LAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       206 LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ++++....|.+|.+.....  .......|+..++|..|++....++.+++
T Consensus       187 lFv~Tt~~V~~y~l~gr~p--~~~~ld~~G~~lnCss~~~~t~qfIca~~  234 (933)
T KOG2114|consen  187 LFVATTEQVMLYSLSGRTP--SLKVLDNNGISLNCSSFSDGTYQFICAGS  234 (933)
T ss_pred             EEEEecceeEEEEecCCCc--ceeeeccCCccceeeecCCCCccEEEecC
Confidence            6666677799999884441  12346778889999999987664555443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=97.20  E-value=0.0013  Score=83.06  Aligned_cols=151  Identities=15%  Similarity=0.234  Sum_probs=115.7

Q ss_pred             CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc-cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE
Q 004217          106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC  184 (767)
Q Consensus       106 H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~-gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~  184 (767)
                      +-..|.++.=+|...+.++|+.||.|++|....+..+..++ .-...|+.+.|+. .|+.+..+..||.+.+|.+. .+.
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQAS-PKP 2284 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccC-Ccc
Confidence            44567888888888899999999999999998888776664 2237899999999 88888889999999999987 333


Q ss_pred             EEe-ecCCCCeEEEEEcCCCCEEEEEE---CCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe----
Q 004217          185 IGS-RDFYRPIASIAFHASGELLAVAS---GHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE----  255 (767)
Q Consensus       185 i~~-l~h~~~VtsVafSPdG~~LAsgS---dd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs----  255 (767)
                      ... ..|........|-.  ..+++++   +++ +.+||........  .....|...++++++-|..+.++++|.    
T Consensus      2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s--~v~~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS--LVHTCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred             eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc--eeeeecCCCceEEEEcCcceEEEecCCcCcE
Confidence            333 34777777777764  6677665   444 9999976544322  233789999999999999997666665    


Q ss_pred             -eCCcCCC
Q 004217          256 -VNDLDSS  262 (767)
Q Consensus       256 -vwdl~s~  262 (767)
                       +||++..
T Consensus      2361 ~l~D~rqr 2368 (2439)
T KOG1064|consen 2361 CLFDIRQR 2368 (2439)
T ss_pred             EEeehHHH
Confidence             8887743

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.15  E-value=0.016  Score=67.96  Aligned_cols=149  Identities=11%  Similarity=0.028  Sum_probs=107.2

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCC-----CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE-----
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPL-----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC-----  141 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L-----~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~-----  141 (767)
                      .....+....++++-|+..|.+.+++-..+++     .+-.+.+..+..|++..++|.|+..|.|.|+-+..+..     
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~  115 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY  115 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence            34444556889999999999999999887632     23455677788899999999999999999998766321     


Q ss_pred             EEEE-ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC-----eEEEeecCCCCeEEEEEcCCCCEEEEEECCcEE
Q 004217          142 LKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-----ECIGSRDFYRPIASIAFHASGELLAVASGHKLY  215 (767)
Q Consensus       142 l~~L-~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg-----~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~  215 (767)
                      +..+ +.|+..|++++|++ ++..+++|...|+|.+-.+.+.     .....+...+.|-.+.+.  ..+|.+++--+..
T Consensus       116 ~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~r~~  192 (726)
T KOG3621|consen  116 VTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLTRCI  192 (726)
T ss_pred             eccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhhhhh
Confidence            1111 34788999999999 9999999999999999888762     112224456777666654  3455555555556


Q ss_pred             EEEcCCCc
Q 004217          216 IWRYNMRE  223 (767)
Q Consensus       216 VWDl~t~~  223 (767)
                      +++++.++
T Consensus       193 Lc~tE~et  200 (726)
T KOG3621|consen  193 LCQTEAET  200 (726)
T ss_pred             eeecchhH
Confidence            66665544

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.13  E-value=0.00011  Score=84.56  Aligned_cols=171  Identities=17%  Similarity=0.167  Sum_probs=119.7

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC-CCCeEEEEeC----CCeEEEEECCCC--eE--EEEE
Q 004217           81 RRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP-DGKTLASTHG----DHTVKIIDCQTG--SC--LKVL  145 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSp-DG~~LASgs~----DGtVrVWDl~tg--~~--l~~L  145 (767)
                      .-.++.|..+|.|-+-.....      ...+|.+.+++++|++ |.++||.|-.    |-.++|||+.++  .+  -..|
T Consensus        70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f  149 (783)
T KOG1008|consen   70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF  149 (783)
T ss_pred             hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc
Confidence            356778888999988887654      2457888999999999 7888888843    567999999876  22  2223


Q ss_pred             cc-CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcC-CCCEEEEEECCcEEEEE-cCCC
Q 004217          146 HG-HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHA-SGELLAVASGHKLYIWR-YNMR  222 (767)
Q Consensus       146 ~g-H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSP-dG~~LAsgSdd~V~VWD-l~t~  222 (767)
                      .+ ......+++|-. +.+++.+|.....++++|++........-....+..+..+| .+.|++.-.++.|.+|| .++-
T Consensus       150 s~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rni  228 (783)
T KOG1008|consen  150 SSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNI  228 (783)
T ss_pred             ccccccCcccccccc-CcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhh
Confidence            32 334556889986 89999999999999999998433222222334566778888 78899888888899999 4433


Q ss_pred             ccccCCeEEecC-----CCCeEEEEEccCCCeEEEEEe
Q 004217          223 EETSSPRIVLRT-----RRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       223 ~~~~~~~~l~~h-----~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +..   .....|     ...+..++|+|...-++++..
T Consensus       229 enp---l~~i~~~~N~~~~~l~~~aycPtrtglla~l~  263 (783)
T KOG1008|consen  229 ENP---LQIILRNENKKPKQLFALAYCPTRTGLLAVLS  263 (783)
T ss_pred             ccH---HHHHhhCCCCcccceeeEEeccCCcchhhhhc
Confidence            321   111112     234899999998765665543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.10  E-value=0.014  Score=64.70  Aligned_cols=138  Identities=14%  Similarity=0.045  Sum_probs=87.7

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCCCC-----CCC------CeEEEEECC--CCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217           82 RGLASWVEAESLHHLRPKYCPLSP-----PPR------STIAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (767)
Q Consensus        82 ~~LaSgs~DgsIrlWd~~t~~L~g-----H~~------sVtsVaFSp--DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH  148 (767)
                      ..++.+..++.+..+|..++++.-     ...      ....+.-+|  .+..++.++.++.++.||.++|+.+..... 
T Consensus       191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-  269 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-  269 (377)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-
Confidence            356677778888888887764210     000      001111112  356788888899999999999988776642 


Q ss_pred             CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCC-CeEEEEEcCCCCEEEEEECC-cEEEEEcCCCccc
Q 004217          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYR-PIASIAFHASGELLAVASGH-KLYIWRYNMREET  225 (767)
Q Consensus       149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~-~VtsVafSPdG~~LAsgSdd-~V~VWDl~t~~~~  225 (767)
                       ........   .++.++.++.||.+..+|..+++.+.... ... ...+...  .+..|++++.+ .|+++|..+++.+
T Consensus       270 -~~~~~p~~---~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~  343 (377)
T TIGR03300       270 -SSYQGPAV---DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV  343 (377)
T ss_pred             -CCccCceE---eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence             11222222   34667777899999999999998876652 222 2222222  35677777754 4999999998875


Q ss_pred             c
Q 004217          226 S  226 (767)
Q Consensus       226 ~  226 (767)
                      .
T Consensus       344 ~  344 (377)
T TIGR03300       344 A  344 (377)
T ss_pred             E
Confidence            5

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.07  E-value=0.0016  Score=76.15  Aligned_cols=164  Identities=16%  Similarity=0.211  Sum_probs=111.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCe-EEEEEccCCCC
Q 004217           81 RRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS-CLKVLHGHRRT  151 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t~-------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~-~l~~L~gH~~~  151 (767)
                      ...+++++.-+ -.+|++...       -+.+|.+.|+++.|++ ....|++++-|-.|..||+++.. .+..+..-...
T Consensus        82 ~~wiVsts~qk-aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~  160 (1081)
T KOG0309|consen   82 PYWIVSTSNQK-AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA  160 (1081)
T ss_pred             ceeEEecCcch-hhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccccc
Confidence            34455665444 446777543       2669999999999999 56689999999999999998754 44444433445


Q ss_pred             cEEEEEccCCCcEEEEEeCCCeEEEEECCCCe-EEEee-cCCCCeEEEEEcCCC-CEEEEEE-CCcEEEEEcCCCccccC
Q 004217          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSR-DFYRPIASIAFHASG-ELLAVAS-GHKLYIWRYNMREETSS  227 (767)
Q Consensus       152 V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~-~i~~l-~h~~~VtsVafSPdG-~~LAsgS-dd~V~VWDl~t~~~~~~  227 (767)
                      -..+.|+-.+++.+++ +..+.|++||++.|. .+..+ +|...|+.++|..-- ..+.+.+ ++.|++||........ 
T Consensus       161 asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~-  238 (1081)
T KOG0309|consen  161 ASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES-  238 (1081)
T ss_pred             CceeeecccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc-
Confidence            6779999867777766 566789999999765 33333 467778888876532 2344444 5559999997665422 


Q ss_pred             CeEEecCCCCeEEEEEccCCC
Q 004217          228 PRIVLRTRRSLRAVHFHPHAA  248 (767)
Q Consensus       228 ~~~l~~h~~~VtsVaFSPDG~  248 (767)
                       ........+|..-.|-|-|+
T Consensus       239 -~~~vtt~~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  239 -KRTVTTNFPIWRGRYLPFGE  258 (1081)
T ss_pred             -ceeccccCcceeccccccCc
Confidence             22333455666666666554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.99  E-value=0.0092  Score=66.24  Aligned_cols=131  Identities=15%  Similarity=0.054  Sum_probs=83.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCCC-C-CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCC-CcEEEEE
Q 004217           81 RRGLASWVEAESLHHLRPKYCPLSP-P-PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR-TPWVVRF  157 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t~~L~g-H-~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~-~V~sLaf  157 (767)
                      +..++..+.++.+..||.+++++.- . ........  .++..|+.++.||.|..+|..+|+.+........ .......
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i  318 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV  318 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE
Confidence            4567777788999999998774221 0 11111112  2567888888999999999999988766532222 2222222


Q ss_pred             ccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCC-CeE-EEEEcCCCCEEEEEECCcEEEE
Q 004217          158 HPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR-PIA-SIAFHASGELLAVASGHKLYIW  217 (767)
Q Consensus       158 sP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~-~Vt-sVafSPdG~~LAsgSdd~V~VW  217 (767)
                         .++.++.++.||.|.++|..+++.+..+.... .+. +..+. ++++++.+.++.|+.|
T Consensus       319 ---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       319 ---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GDGLLVQTRDGDLYAF  376 (377)
T ss_pred             ---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CCEEEEEeCCceEEEe
Confidence               34678889999999999999999998876333 332 22332 4444444445557654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>smart00320 WD40 WD40 repeats

Probab=96.83  E-value=0.0034  Score=42.93  Aligned_cols=39  Identities=38%  Similarity=0.641  Sum_probs=34.5

Q ss_pred             CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEE
Q 004217          139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN  178 (767)
Q Consensus       139 g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWD  178 (767)
                      ++++..+..|...|.++.|++ +.+++++++.|+.+++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            456677788999999999999 779999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.81  E-value=0.042  Score=56.18  Aligned_cols=141  Identities=18%  Similarity=0.076  Sum_probs=88.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCC-----CC---CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCC
Q 004217           80 ARRGLASWVEAESLHHLRPKYCPLS-----PP---PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~~L~-----gH---~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~  151 (767)
                      .+..++....++.|..+|..++++.     ..   ...........++..++.+..++.|..+|.++|+.+..+......
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~  154 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR  154 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred             cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence            4444555557778888887776321     11   011222333334788888888999999999999998888664422


Q ss_pred             c-----------EEEEEccCCCcEEEEEeCCCe-EEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE-CCcEEEEE
Q 004217          152 P-----------WVVRFHPLNPTIIASGSLDHE-VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWR  218 (767)
Q Consensus       152 V-----------~sLafsP~dg~lLaSgS~DGt-VrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS-dd~V~VWD  218 (767)
                      .           ..+.+.  ++ .++.+..++. +.+ |+.+++.+.... ...+..+ ...++..|++++ ++.|.+||
T Consensus       155 ~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d  228 (238)
T PF13360_consen  155 GSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSSDGRLYALD  228 (238)
T ss_dssp             SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred             CCcceeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence            1           222222  33 6666666775 555 999999765443 3333331 456777777777 55599999


Q ss_pred             cCCCcccc
Q 004217          219 YNMREETS  226 (767)
Q Consensus       219 l~t~~~~~  226 (767)
                      +++++...
T Consensus       229 ~~tG~~~W  236 (238)
T PF13360_consen  229 LKTGKVVW  236 (238)
T ss_dssp             TTTTEEEE
T ss_pred             CCCCCEEe
Confidence            99998643

...

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.73  E-value=0.023  Score=58.11  Aligned_cols=106  Identities=18%  Similarity=0.080  Sum_probs=73.3

Q ss_pred             CCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCC----C
Q 004217          118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFY----R  192 (767)
Q Consensus       118 DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~----~  192 (767)
                      ++.++++++.++.|..||..+|+.+..+.. ...+...-..  .+..++.+..|+.+..+|..+|+.+... ...    .
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~  111 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG  111 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee--cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence            567788888999999999999998887765 3332221122  3455666668889999999999998873 311    1


Q ss_pred             CeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCcccc
Q 004217          193 PIASIAFHASGELLAVAS-GHKLYIWRYNMREETS  226 (767)
Q Consensus       193 ~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~  226 (767)
                      .........++..++++. ++.|..+|+++++.+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w  146 (238)
T PF13360_consen  112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLW  146 (238)
T ss_dssp             TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEE
T ss_pred             cccccCceEecCEEEEEeccCcEEEEecCCCcEEE
Confidence            122233333477777777 5669999999998765

...

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.0028  Score=70.78  Aligned_cols=79  Identities=11%  Similarity=0.102  Sum_probs=62.0

Q ss_pred             cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC------CeEEEee----------cCCCCeEEEEEcCCCCEEEEEE
Q 004217          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST------AECIGSR----------DFYRPIASIAFHASGELLAVAS  210 (767)
Q Consensus       147 gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t------g~~i~~l----------~h~~~VtsVafSPdG~~LAsgS  210 (767)
                      -|..+|..+.+.+ -++.++|....|.|.-|....      .+....+          +......++.|+|+|..+.+-+
T Consensus       142 lH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~  220 (558)
T KOG0882|consen  142 LHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN  220 (558)
T ss_pred             cccCceEEEEeec-cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence            4888999999999 888999999999999998773      1111112          2345678999999999999888


Q ss_pred             CCc-EEEEEcCCCcccc
Q 004217          211 GHK-LYIWRYNMREETS  226 (767)
Q Consensus       211 dd~-V~VWDl~t~~~~~  226 (767)
                      .+. |+++++++++..+
T Consensus       221 ~DrkVR~F~~KtGklvq  237 (558)
T KOG0882|consen  221 PDRKVRGFVFKTGKLVQ  237 (558)
T ss_pred             cccEEEEEEeccchhhh
Confidence            766 9999999987533

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.64  E-value=0.023  Score=69.08  Aligned_cols=132  Identities=11%  Similarity=0.130  Sum_probs=92.6

Q ss_pred             CCCeEEEE-eCCCeEEEEECCCCeEEEEEccCCCC-cEEEEEccC------CCcEEEEEeCCCeEEEEECCCCe--EEEe
Q 004217          118 DGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRT-PWVVRFHPL------NPTIIASGSLDHEVRLWNASTAE--CIGS  187 (767)
Q Consensus       118 DG~~LASg-s~DGtVrVWDl~tg~~l~~L~gH~~~-V~sLafsP~------dg~lLaSgS~DGtVrIWDl~tg~--~i~~  187 (767)
                      |.+.|+.- .....|+-.|++.|+.+..++.|... |.  .+.|.      +..-.+.|-.++.+..||.|-..  ++..
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~  569 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS  569 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCccee--EecccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence            33444433 34578999999999999999887754 44  44451      23456677888999999998532  3322


Q ss_pred             ----ecCCCCeEEEEEcCCCCEEEEEECC-cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          188 ----RDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       188 ----l~h~~~VtsVafSPdG~~LAsgSdd-~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                          +.......|++-+.+| +||+|+.+ .|++||- .++.  ....+.+-..+|..|..+.||+|+|+||.
T Consensus       570 ~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~--AKT~lp~lG~pI~~iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  570 QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKR--AKTALPGLGDPIIGIDVTADGKWILATCK  638 (794)
T ss_pred             cccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchh--hhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence                2345567788877777 66677755 4999993 3332  23445566899999999999999999998

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=96.58  E-value=0.16  Score=60.44  Aligned_cols=139  Identities=11%  Similarity=0.112  Sum_probs=101.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCC------------CeEEEEeCCCeEEEEECCCCeEEE
Q 004217           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDG------------KTLASTHGDHTVKIIDCQTGSCLK  143 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG------------~~LASgs~DGtVrVWDl~tg~~l~  143 (767)
                      .++.++-|+ -..|.+-|..+-    .+.-|...|+.+.|.|-.            -+||++...|.|.|||+..+..+.
T Consensus        25 ~~GLiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~  103 (1062)
T KOG1912|consen   25 PSGLIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN  103 (1062)
T ss_pred             ccceEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh
Confidence            344444443 445666676543    355788999999998721            156778888999999999999888


Q ss_pred             EEccCCCCcEEEEEccC--CC-cEEEEEeCCCeEEEEECCCCeEEEeecCCC-CeEEEEEcCCC-C-EEEEEECCcEEEE
Q 004217          144 VLHGHRRTPWVVRFHPL--NP-TIIASGSLDHEVRLWNASTAECIGSRDFYR-PIASIAFHASG-E-LLAVASGHKLYIW  217 (767)
Q Consensus       144 ~L~gH~~~V~sLafsP~--dg-~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~-~VtsVafSPdG-~-~LAsgSdd~V~VW  217 (767)
                      .+..|.+.+..++|-+.  +. ++|+.-....++.+|+..+|+.+....... ...|+.++|-. + +.+.++.+.+.+-
T Consensus       104 ~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~  183 (1062)
T KOG1912|consen  104 WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSC  183 (1062)
T ss_pred             hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEE
Confidence            89999999999999762  23 577777888999999999999998876444 44568888843 4 4445555656655


Q ss_pred             Ec
Q 004217          218 RY  219 (767)
Q Consensus       218 Dl  219 (767)
                      +.
T Consensus       184 ~~  185 (1062)
T KOG1912|consen  184 KD  185 (1062)
T ss_pred             ec
Confidence            54

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.51  E-value=0.012  Score=68.38  Aligned_cols=93  Identities=14%  Similarity=0.121  Sum_probs=80.9

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcE-EEEEccCCCcEEEEEeCCCeEEEEECCCCeEE
Q 004217          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECI  185 (767)
Q Consensus       107 ~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~-sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i  185 (767)
                      ...|.-+.|+|.-.+||.+..+|.|.+..+. .+.+.++.-|...++ +++|.| |+++++.|-.||+|++.|+.++..+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence            4468889999999999999999999999988 777888887777777 999999 8999999999999999999999888


Q ss_pred             Ee--ecCCCCeEEEEEcC
Q 004217          186 GS--RDFYRPIASIAFHA  201 (767)
Q Consensus       186 ~~--l~h~~~VtsVafSP  201 (767)
                      ..  +--...|.++-|++
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            77  44567788888873

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.27  E-value=0.081  Score=58.71  Aligned_cols=171  Identities=16%  Similarity=0.216  Sum_probs=94.6

Q ss_pred             CCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEec-------C---------
Q 004217          171 DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLR-------T---------  234 (767)
Q Consensus       171 DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~-------h---------  234 (767)
                      .+.+.|||+.+++..........+....|+|+|+.++...++.|++++..++...+ . ...+       -         
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~-l-T~dg~~~i~nG~~dwvyeEEv   99 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQ-L-TTDGEPGIYNGVPDWVYEEEV   99 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEE-S-ES--TTTEEESB--HHHHHHT
T ss_pred             ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEE-e-ccccceeEEcCccceeccccc
Confidence            46799999999887766555678889999999999999999999999987775433 1 1111       0         


Q ss_pred             CCCeEEEEEccCCCeEEEEEeeC-Cc--------CCCCc--c---eeEeecCCCccCCCCeEEE--ecCCCCCCCceeec
Q 004217          235 RRSLRAVHFHPHAAPLLLTAEVN-DL--------DSSES--S---LTLATSPGYWRYPPPVICM--AGAHSSSHPGLAEE  298 (767)
Q Consensus       235 ~~~VtsVaFSPDG~~LlaSgsvw-dl--------~s~~~--~---~~l~t~sG~~~~p~~~v~l--~~~~Ssd~~~L~sg  298 (767)
                      -+.-..+-|||||++|+...-.. .+        .....  +   .......|-   +.+.+.+  .+..++....+...
T Consensus       100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~---~np~v~l~v~~~~~~~~~~~~~~  176 (353)
T PF00930_consen  100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD---PNPRVSLFVVDLASGKTTELDPP  176 (353)
T ss_dssp             SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS------EEEEEEEESSSTCCCEE---
T ss_pred             cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC---cCCceEEEEEECCCCcEEEeeec
Confidence            12235788999999887654311 11        11100  0   000111222   1233443  44433332211111


Q ss_pred             c-CCCCCCce-eeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217          299 V-PLITPPFL-RPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       299 ~-~~~slpil-~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                      . ....-..+ .+.|++|+.++++.+.+.+            .....+...|..++.....+
T Consensus       177 ~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~------------q~~~~l~~~d~~tg~~~~~~  226 (353)
T PF00930_consen  177 NSLNPQDYYLTRVGWSPDGKRLWVQWLNRD------------QNRLDLVLCDASTGETRVVL  226 (353)
T ss_dssp             HHHHTSSEEEEEEEEEETTEEEEEEEEETT------------STEEEEEEEEECTTTCEEEE
T ss_pred             cccCCCccCcccceecCCCcEEEEEEcccC------------CCEEEEEEEECCCCceeEEE
Confidence            0 01112233 7999999997887555443            34445666777776666555

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.27  E-value=0.021  Score=67.11  Aligned_cols=138  Identities=12%  Similarity=0.143  Sum_probs=96.4

Q ss_pred             CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE-EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE
Q 004217          106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC  184 (767)
Q Consensus       106 H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~-~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~  184 (767)
                      |+..|.--+++..+++|+.|+.-|.|++|+-..+.... ...+-.+.+..+..++ +..+++.|+..|.|.++.+.....
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence            44456666677789999999999999999977766432 2233445566677888 888999999999999998876332


Q ss_pred             EE---e----ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCC-ccccCCeEEecCCCCeEEEEEc
Q 004217          185 IG---S----RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMR-EETSSPRIVLRTRRSLRAVHFH  244 (767)
Q Consensus       185 i~---~----l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~-~~~~~~~~l~~h~~~VtsVaFS  244 (767)
                      -.   .    ..|...|++++|++++..|++|.+.+ |..-.+... ........+..-.+.|-.+...
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            11   1    12678999999999999999998644 766666652 1112223344445667666654

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.26  E-value=0.085  Score=62.43  Aligned_cols=100  Identities=17%  Similarity=0.285  Sum_probs=68.2

Q ss_pred             CCCeEEEEeCCCeEEEEECCC----C-eEEEEEccCCCCcEEEEEccCCCcEE-EEEeCCCeEEEEECCCCeE-------
Q 004217          118 DGKTLASTHGDHTVKIIDCQT----G-SCLKVLHGHRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAEC-------  184 (767)
Q Consensus       118 DG~~LASgs~DGtVrVWDl~t----g-~~l~~L~gH~~~V~sLafsP~dg~lL-aSgS~DGtVrIWDl~tg~~-------  184 (767)
                      +|++...  .+++|.+.|..+    + +.+..+. -......+.++| |++++ +++..+.+|.+.|+.+.+.       
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~~  362 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK  362 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence            5555444  356799999887    3 4444443 456688999999 66655 5555699999999988553       


Q ss_pred             -----EEeecCCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCC
Q 004217          185 -----IGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNM  221 (767)
Q Consensus       185 -----i~~l~h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t  221 (767)
                           +....-.......+|+++|+...+-. +..|..||+.+
T Consensus       363 ~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        363 PRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                 33333334445678999998655555 44599999876

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.20  E-value=0.59  Score=52.65  Aligned_cols=145  Identities=14%  Similarity=0.192  Sum_probs=100.3

Q ss_pred             eEEEEECCCCCeE-EEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEe--CCCeEEEEECCCCeEEE
Q 004217          110 TIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS--LDHEVRLWNASTAECIG  186 (767)
Q Consensus       110 VtsVaFSpDG~~L-ASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS--~DGtVrIWDl~tg~~i~  186 (767)
                      -..++++++++.+ +....+..|.+.|..+.+.+....-- .....++++|++..+.++-.  .++++.+.|..+.+.+.
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            4578889988854 45555689999998887766655322 26678999994445555555  37999999999999888


Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEE--CCcEEEEEcCCCcccc-CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          187 SRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       187 ~l~h~~~VtsVafSPdG~~LAsgS--dd~V~VWDl~t~~~~~-~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ...-...-..++++|+|+.+.+..  ++.|.+.|........ .......-...-..+.++|+|+++.++..
T Consensus       155 ~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~  226 (381)
T COG3391         155 TIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND  226 (381)
T ss_pred             EEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEec
Confidence            854333338899999999877776  4559999976665431 11111222344568999999997766544

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.16  E-value=0.45  Score=56.51  Aligned_cols=146  Identities=8%  Similarity=-0.025  Sum_probs=94.8

Q ss_pred             EEECCCCCeEEEE-eCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEe----------------------
Q 004217          113 AAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS----------------------  169 (767)
Q Consensus       113 VaFSpDG~~LASg-s~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS----------------------  169 (767)
                      +=+++||+.+... -..+.+.+.|.++.+...++.-- +....++++| +++++++.+                      
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv  275 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV  275 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence            3456678766433 23567888898888776666432 2445677888 666666554                      


Q ss_pred             ------------------CCCeEEEEECCC-----CeEEEeecCCCCeEEEEEcCCCCEEEEEE--CCcEEEEEcCCCcc
Q 004217          170 ------------------LDHEVRLWNAST-----AECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREE  224 (767)
Q Consensus       170 ------------------~DGtVrIWDl~t-----g~~i~~l~h~~~VtsVafSPdG~~LAsgS--dd~V~VWDl~t~~~  224 (767)
                                        .+++|.+.|.++     .+.+..+.-......++++|||+++++++  ++.|.|+|+.+.+.
T Consensus       276 fni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~  355 (635)
T PRK02888        276 FNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD  355 (635)
T ss_pred             EchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence                              235688888887     45666677777888999999999999888  45599999987653


Q ss_pred             cc-----CCeE---EecCCCCeEEEEEccCCCeEEEEEe------eCCcCC
Q 004217          225 TS-----SPRI---VLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDS  261 (767)
Q Consensus       225 ~~-----~~~~---l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s  261 (767)
                      .-     ....   ...-...-...+|.++|. ..++--      .|++..
T Consensus       356 ~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        356 LFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhhccCCccceEEEeeccCCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence            10     0000   111133445788999987 444332      677664

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.15  E-value=0.095  Score=62.41  Aligned_cols=139  Identities=15%  Similarity=0.166  Sum_probs=84.1

Q ss_pred             CCCCeEEEEECCCCCeEEEEe------CCC--eEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCC------
Q 004217          106 PPRSTIAAAFSPDGKTLASTH------GDH--TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD------  171 (767)
Q Consensus       106 H~~sVtsVaFSpDG~~LASgs------~DG--tVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~D------  171 (767)
                      ....+...++||||+.++..-      .|.  .|.+++.. +.....+.+.  ....-.|+| +++.+++....      
T Consensus       348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWsp-DG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSL-DADAVWVVVDGNTVVRV  423 (591)
T ss_pred             cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECC-CCCceEEEecCcceEEE
Confidence            334688999999999987765      243  45555642 3332223333  377889999 76666665422      


Q ss_pred             ------CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEE---EEcCCCc-cccCCeEEec-CCCCeEE
Q 004217          172 ------HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYI---WRYNMRE-ETSSPRIVLR-TRRSLRA  240 (767)
Q Consensus       172 ------GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~V---WDl~t~~-~~~~~~~l~~-h~~~Vts  240 (767)
                            +.+.+.++..++...  .....|..+.|||||..|+...+++|++   -....+. .+..+..+.. -...+.+
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~  501 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS  501 (591)
T ss_pred             eccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence                  233333444443322  3456799999999999988887777666   3333332 1111222222 2334688


Q ss_pred             EEEccCCCeE
Q 004217          241 VHFHPHAAPL  250 (767)
Q Consensus       241 VaFSPDG~~L  250 (767)
                      +.|..++..+
T Consensus       502 l~W~~~~~L~  511 (591)
T PRK13616        502 LDWRTGDSLV  511 (591)
T ss_pred             ceEecCCEEE
Confidence            9999999844

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.14  E-value=0.25  Score=59.46  Aligned_cols=134  Identities=9%  Similarity=0.162  Sum_probs=91.6

Q ss_pred             EECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCe-----EEEEECCC------C
Q 004217          114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE-----VRLWNAST------A  182 (767)
Q Consensus       114 aFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGt-----VrIWDl~t------g  182 (767)
                      +|++.+..++.|+.||.|.+.+ ..-+.++.|+.+...+...-|.-.+.++|++.+.|+.     |+|||+..      .
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            4677788999999999888887 3345557788777773333344425578888877754     99999864      2


Q ss_pred             eEE---Eeec-----CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcC--CCccccCCeEEecCCCCeEEEEEccCCCe
Q 004217          183 ECI---GSRD-----FYRPIASIAFHASGELLAVASGHK-LYIWRYN--MREETSSPRIVLRTRRSLRAVHFHPHAAP  249 (767)
Q Consensus       183 ~~i---~~l~-----h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~--t~~~~~~~~~l~~h~~~VtsVaFSPDG~~  249 (767)
                      +++   +.+.     ...++.+++.+.+-+.+|+|-.++ |..+.=+  ..... +.......+.+|+.+.|..|++.
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~~~~~pITgL~~~~d~~s  185 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-RQDYSHRGKEPITGLALRSDGKS  185 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc-ceeeeccCCCCceeeEEecCCce
Confidence            344   2222     346788999999989999998777 6666322  11111 12233345789999999999987

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.11  E-value=0.65  Score=52.33  Aligned_cols=176  Identities=17%  Similarity=0.174  Sum_probs=118.1

Q ss_pred             EEEEEcCCCEEE-EEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCeEEEEeC---CCeEEEEECCCCeEEEEEc
Q 004217           74 FEAGRDARRGLA-SWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        74 ~vA~sd~g~~La-Sgs~DgsIrlWd~~t~~L~---gH~~sVtsVaFSpDG~~LASgs~---DGtVrVWDl~tg~~l~~L~  146 (767)
                      -++....+..++ ....++.|.+.|..+.+..   .-......++|+++++.+..+..   ++++.+.|..+++.+....
T Consensus        78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~  157 (381)
T COG3391          78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP  157 (381)
T ss_pred             ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence            344545555444 4445688999986654211   11226778999999988877655   6899999999998887754


Q ss_pred             cCCCCcEEEEEccCCCc-EEEEEeCCCeEEEEECCCCeEEE-e----ecCCCCeEEEEEcCCCCEEEEEECC----cEEE
Q 004217          147 GHRRTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAECIG-S----RDFYRPIASIAFHASGELLAVASGH----KLYI  216 (767)
Q Consensus       147 gH~~~V~sLafsP~dg~-lLaSgS~DGtVrIWDl~tg~~i~-~----l~h~~~VtsVafSPdG~~LAsgSdd----~V~V  216 (767)
                      .-..+ ..+++.| +++ .+++-..++.|.+.|........ .    .........+.++|+|.++.+...+    .+.+
T Consensus       158 vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~  235 (381)
T COG3391         158 VGNTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK  235 (381)
T ss_pred             cCCCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence            33333 8899999 666 55555689999999987766663 1    2333445678999999977666532    4888


Q ss_pred             EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217          217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       217 WDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      .|..++...... ...+.. ....+.++|+|+++...
T Consensus       236 id~~~~~v~~~~-~~~~~~-~~~~v~~~p~g~~~yv~  270 (381)
T COG3391         236 IDTATGNVTATD-LPVGSG-APRGVAVDPAGKAAYVA  270 (381)
T ss_pred             EeCCCceEEEec-cccccC-CCCceeECCCCCEEEEE
Confidence            888877654410 111122 45678999999976665

>smart00320 WD40 WD40 repeats

Probab=96.03  E-value=0.0095  Score=40.63  Aligned_cols=32  Identities=44%  Similarity=0.586  Sum_probs=29.2

Q ss_pred             CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEE
Q 004217          104 SPPPRSTIAAAFSPDGKTLASTHGDHTVKIID  135 (767)
Q Consensus       104 ~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWD  135 (767)
                      ..|...|.++.|+++++++++++.|+.+++||
T Consensus         9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            35788899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.99  E-value=0.12  Score=59.56  Aligned_cols=131  Identities=12%  Similarity=0.144  Sum_probs=75.1

Q ss_pred             CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee
Q 004217          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR  188 (767)
Q Consensus       109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l  188 (767)
                      ....+.++|+|+.++. +.||.-.|+.....+....     +.-....|.+ .+ .++.-....+|.|+.--+.+..+.+
T Consensus        34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n-~yAv~~~~~~I~I~kn~~~~~~k~i  105 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RN-RYAVLESSSTIKIYKNFKNEVVKSI  105 (443)
T ss_dssp             --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SS-EEEEE-TTS-EEEEETTEE-TT---
T ss_pred             CCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEec-Cc-cEEEEECCCeEEEEEcCccccceEE
Confidence            4678999999999888 4567888887544443222     2234678888 44 4666666888999733232322344


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          189 DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       189 ~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .....+..+-.   |.+|...+++.|.+||+.+++.+.   .+. . ..|..|.|+++|.+++..++
T Consensus       106 ~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~---~i~-v-~~vk~V~Ws~~g~~val~t~  164 (443)
T PF04053_consen  106 KLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIR---RID-V-SAVKYVIWSDDGELVALVTK  164 (443)
T ss_dssp             --SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEE---EES-S--E-EEEEE-TTSSEEEEE-S
T ss_pred             cCCcccceEEc---CcEEEEECCCCEEEEEhhHcceee---EEe-c-CCCcEEEEECCCCEEEEEeC
Confidence            43344444433   888888888889999999987655   222 2 24899999999998887765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08953 DUF1899: Domain of unknown function (DUF1899); InterPro: IPR015048 This set of proteins are found in various eukaryotic proteins

Probab=95.97  E-value=0.0068  Score=51.32  Aligned_cols=41  Identities=24%  Similarity=0.280  Sum_probs=22.6

Q ss_pred             CCCCCcceecccccccccCCCccCcceeecccccceecCCc
Q 004217           30 HRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSF   70 (767)
Q Consensus        30 ~r~sk~rnVf~~~~kre~~~~~~~~sk~~wd~~~~~~~~s~   70 (767)
                      .|.|||||||+...++|.++.+.++....||.+.+.++..+
T Consensus         3 vR~SKfRhv~g~~~kke~~y~~i~vs~~~~d~n~i~~N~kf   43 (65)
T PF08953_consen    3 VRSSKFRHVFGKPAKKEECYDNIRVSTSSWDSNFIAANPKF   43 (65)
T ss_dssp             ----TTTT-EEEE--GGGSEES--B-----SS-CEEE-SSE
T ss_pred             ccccccccccCccCCccccCcCEEEeCccccCCeEEEcCCE
Confidence            68999999999999999999999999999999988888444

The function is unknown. ; PDB: 2B4E_A 2AQ5_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.93  E-value=0.4  Score=44.96  Aligned_cols=96  Identities=15%  Similarity=0.116  Sum_probs=64.6

Q ss_pred             eEEEEECC-CC---CeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEE
Q 004217          110 TIAAAFSP-DG---KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI  185 (767)
Q Consensus       110 VtsVaFSp-DG---~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i  185 (767)
                      |+++++.. |+   +.|+.|+.|..||||+-  .+.+..+.. ++.|..+.-..  ...|+.+..+|+|-+|+-.  +.+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~--~Rl   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLG--GGRFAYALANGTVGVYDRS--QRL   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcC--CCEEEEEecCCEEEEEeCc--cee
Confidence            56666655 33   57999999999999974  355666654 46677776655  4789999999999999753  344


Q ss_pred             EeecCCCCeEEEEEc-CCC--C-EEEEEECC
Q 004217          186 GSRDFYRPIASIAFH-ASG--E-LLAVASGH  212 (767)
Q Consensus       186 ~~l~h~~~VtsVafS-PdG--~-~LAsgSdd  212 (767)
                      ...+.+..+.++.+. .+|  . -|++|-.+
T Consensus        75 WRiKSK~~~~~~~~~D~~gdG~~eLI~Gwsn  105 (111)
T PF14783_consen   75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSN  105 (111)
T ss_pred             eeeccCCCeEEEEEEcCCCCCceEEEEEecC
Confidence            444555556666543 333  2 56666543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.85  E-value=0.084  Score=60.75  Aligned_cols=170  Identities=14%  Similarity=0.141  Sum_probs=90.5

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCC
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~  151 (767)
                      +..+..+++++.++. ..++...++.....+- ...+.-....|..+++ +|+-..+.+|+|+.--+.+....++-. ..
T Consensus        35 p~~ls~npngr~v~V-~g~geY~iyt~~~~r~-k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~  110 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN-KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLP-FS  110 (443)
T ss_dssp             -SEEEE-TTSSEEEE-EETTEEEEEETTTTEE-EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----S-S-
T ss_pred             CeeEEECCCCCEEEE-EcCCEEEEEEccCCcc-cccCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcCC-cc
Confidence            444555667777766 5577777777432211 1234456788998554 666666889999632222222233321 22


Q ss_pred             cEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCC-------cc
Q 004217          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMR-------EE  224 (767)
Q Consensus       152 V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~-------~~  224 (767)
                      +..|-  .  +.+|...+.+ .|.+||+.+++.++.+.... |..+.|+++|++++..+++.+.|++.+..       +.
T Consensus       111 ~~~If--~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g  184 (443)
T PF04053_consen  111 VEKIF--G--GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEG  184 (443)
T ss_dssp             EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB
T ss_pred             cceEE--c--CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccC
Confidence            34442  2  5666665544 89999999999999988664 89999999999999999999888876544       00


Q ss_pred             ccCCe-EEecCCCCeEEEEEccCCCeEEEE
Q 004217          225 TSSPR-IVLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       225 ~~~~~-~l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      ..... ....-...|.+..|.-|  .++.+
T Consensus       185 ~e~~f~~~~E~~~~IkSg~W~~d--~fiYt  212 (443)
T PF04053_consen  185 VEDAFELIHEISERIKSGCWVED--CFIYT  212 (443)
T ss_dssp             -GGGEEEEEEE-S--SEEEEETT--EEEEE
T ss_pred             chhceEEEEEecceeEEEEEEcC--EEEEE
Confidence            00011 22222678889999876  34444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.82  E-value=0.034  Score=64.74  Aligned_cols=93  Identities=12%  Similarity=0.136  Sum_probs=74.4

Q ss_pred             CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeE-EEEEcCCCCEEEEEECCc-EEEEEcCCCccc
Q 004217          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIA-SIAFHASGELLAVASGHK-LYIWRYNMREET  225 (767)
Q Consensus       149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~Vt-sVafSPdG~~LAsgSdd~-V~VWDl~t~~~~  225 (767)
                      ...+.-+.|+| .-+++|.+..+|.|.+..+. .+.+.++. +...++ +++|.|||++||+|-.|+ |++.|+.++..+
T Consensus        20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            34577899999 89999999999999999888 67777776 666666 999999999999998655 999999998865


Q ss_pred             cCCeEEecCCCCeEEEEEcc
Q 004217          226 SSPRIVLRTRRSLRAVHFHP  245 (767)
Q Consensus       226 ~~~~~l~~h~~~VtsVaFSP  245 (767)
                      ..  ....-...|.++.|++
T Consensus        98 ~~--~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VS--FLFSVETDISKGIWDR  115 (665)
T ss_pred             ec--cccccccchheeeccc
Confidence            51  1223456778888873

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.81  E-value=0.64  Score=58.06  Aligned_cols=157  Identities=11%  Similarity=0.159  Sum_probs=100.7

Q ss_pred             eEEEEeCCCCCCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCC
Q 004217           92 SLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD  171 (767)
Q Consensus        92 sIrlWd~~t~~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~D  171 (767)
                      .+++|-.....-.+. +.|.++.|--++..|+.+..+|.|.+-|.++.. +.....-...|.+++|+| |+.+++-...+
T Consensus        54 kv~~~~~s~~~~~gd-~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-~eivg~vd~GI~aaswS~-Dee~l~liT~~  130 (1265)
T KOG1920|consen   54 KVRLVAESFLPEDGD-DEIVSVQFLADTNSICVITALGDIILVDPETLE-LEIVGNVDNGISAASWSP-DEELLALITGR  130 (1265)
T ss_pred             cccceeecccCcCCC-cceEEEEEecccceEEEEecCCcEEEEcccccc-eeeeeeccCceEEEeecC-CCcEEEEEeCC
Confidence            355554433222222 689999999999999999999999999988765 222333456799999999 99999988888


Q ss_pred             CeEEEEEC----CCCeEE-----------Ee--------ec----------------------CCCCeEEEEEcCCCCEE
Q 004217          172 HEVRLWNA----STAECI-----------GS--------RD----------------------FYRPIASIAFHASGELL  206 (767)
Q Consensus       172 GtVrIWDl----~tg~~i-----------~~--------l~----------------------h~~~VtsVafSPdG~~L  206 (767)
                      .++.+-+-    -..+.+           ..        +.                      ..+.=++|.|--||+++
T Consensus       131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~f  210 (1265)
T KOG1920|consen  131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYF  210 (1265)
T ss_pred             cEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEE
Confidence            87766422    111111           00        00                      01112358999999999


Q ss_pred             EEEE-----C-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          207 AVAS-----G-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       207 AsgS-----d-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      |+..     + .+|+|||-+ +....   .-..-...=.+++|-|.|..+++...
T Consensus       211 AVs~~~~~~~~RkirV~drE-g~Lns---~se~~~~l~~~LsWkPsgs~iA~iq~  261 (1265)
T KOG1920|consen  211 AVSFVESETGTRKIRVYDRE-GALNS---TSEPVEGLQHSLSWKPSGSLIAAIQC  261 (1265)
T ss_pred             EEEEEeccCCceeEEEeccc-chhhc---ccCcccccccceeecCCCCeEeeeee
Confidence            9964     3 339999977 32211   11111223358999999996666543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.70  E-value=1.3  Score=48.12  Aligned_cols=149  Identities=14%  Similarity=0.236  Sum_probs=99.9

Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc--cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEEC
Q 004217          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~--gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl  179 (767)
                      ++.+-...|.++.|+|+.+.|++..+...-.||=...|+.++++.  +- .....|.|.. ++.+.++--.+..+.++.+
T Consensus        80 pi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig-~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          80 PILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIG-GNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             ccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEec-CCEEEEEehhcceEEEEEE
Confidence            366777779999999999999988888887777777898888763  32 2345677877 7778887778888888877


Q ss_pred             CCCeEEEe-------e---cC-CCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecC-------CCCeEE
Q 004217          180 STAECIGS-------R---DF-YRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRT-------RRSLRA  240 (767)
Q Consensus       180 ~tg~~i~~-------l---~h-~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h-------~~~Vts  240 (767)
                      .....+..       +   .+ +.....++|+|..+.|.++-... +.||.+......-.......+       -..|.+
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg  237 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG  237 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence            65432211       1   12 45677899999999888888766 666655533211101111111       235778


Q ss_pred             EEEccCCCeEEE
Q 004217          241 VHFHPHAAPLLL  252 (767)
Q Consensus       241 VaFSPDG~~Lla  252 (767)
                      +.|++....+++
T Consensus       238 l~~~~~~~~LLV  249 (316)
T COG3204         238 LEFNAITNSLLV  249 (316)
T ss_pred             ceecCCCCcEEE
Confidence            889976554544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.68  E-value=0.52  Score=55.09  Aligned_cols=151  Identities=13%  Similarity=0.126  Sum_probs=93.2

Q ss_pred             CCCCCCCeEEEEECCC----CCeEEEEeCCCeEEEEECC-----CCeEEEEEccC---CCC--cEEEEEccCCCcEEEEE
Q 004217          103 LSPPPRSTIAAAFSPD----GKTLASTHGDHTVKIIDCQ-----TGSCLKVLHGH---RRT--PWVVRFHPLNPTIIASG  168 (767)
Q Consensus       103 L~gH~~sVtsVaFSpD----G~~LASgs~DGtVrVWDl~-----tg~~l~~L~gH---~~~--V~sLafsP~dg~lLaSg  168 (767)
                      ..|.-..|..+.|.|-    -..|++......|.||-+.     +++.+.....+   .-+  ...+.||| ...+|+.-
T Consensus        52 viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VL  130 (671)
T PF15390_consen   52 VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVL  130 (671)
T ss_pred             EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEE
Confidence            4466677999999993    3244455566799999885     23333222111   111  24577999 66666655


Q ss_pred             eCCCeEEEEECCCC--eEEEeecCCCCeEEEEEcCCCCEEEEEECCc--EEEEEcCCCccccC-CeEEecCCCCeEEEEE
Q 004217          169 SLDHEVRLWNASTA--ECIGSRDFYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSS-PRIVLRTRRSLRAVHF  243 (767)
Q Consensus       169 S~DGtVrIWDl~tg--~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~--V~VWDl~t~~~~~~-~~~l~~h~~~VtsVaF  243 (767)
                      .....-.+++++..  +....+...+.|.|.+|..||+.|+++-+..  -+|||-........ ...+..-.+.|.++.-
T Consensus       131 T~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~A  210 (671)
T PF15390_consen  131 TARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEA  210 (671)
T ss_pred             ecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEE
Confidence            44444455666533  3333467889999999999999887776655  88998655433221 1233444667888777


Q ss_pred             ccCCCeEEEEEe
Q 004217          244 HPHAAPLLLTAE  255 (767)
Q Consensus       244 SPDG~~LlaSgs  255 (767)
                      .-|.+ ++.+.+
T Consensus       211 T~dsq-VAvaTE  221 (671)
T PF15390_consen  211 TVDSQ-VAVATE  221 (671)
T ss_pred             eccce-EEEEec
Confidence            66665 444443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.65  E-value=0.71  Score=52.01  Aligned_cols=157  Identities=18%  Similarity=0.147  Sum_probs=87.8

Q ss_pred             EEEEeCCCCCCCCC-CCCeEEEEECCCCCeEEEE-eCC----CeEEEEECCCCeEEEE-EccCCCCcEEEEEccCCCcEE
Q 004217           93 LHHLRPKYCPLSPP-PRSTIAAAFSPDGKTLAST-HGD----HTVKIIDCQTGSCLKV-LHGHRRTPWVVRFHPLNPTII  165 (767)
Q Consensus        93 IrlWd~~t~~L~gH-~~sVtsVaFSpDG~~LASg-s~D----GtVrVWDl~tg~~l~~-L~gH~~~V~sLafsP~dg~lL  165 (767)
                      -.++|...-. .++ ...+....+||||++||.+ +..    .+|+++|+++|+.+.. +...  ....+.|.+ +++.|
T Consensus       109 evllD~n~l~-~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~-d~~~~  184 (414)
T PF02897_consen  109 EVLLDPNELA-KDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSD-DGKGF  184 (414)
T ss_dssp             EEEEEGGGGS-TTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECT-TSSEE
T ss_pred             EEEEcchHhh-ccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeC-CCCEE
Confidence            4455654321 122 2334478999999998865 333    3599999999987653 2321  123499999 65555


Q ss_pred             EEEeCC-----------CeEEEEECCCCeEE--Eeec--CCCC-eEEEEEcCCCCEEEEEE---CC-c-EEEEEcCCCc-
Q 004217          166 ASGSLD-----------HEVRLWNASTAECI--GSRD--FYRP-IASIAFHASGELLAVAS---GH-K-LYIWRYNMRE-  223 (767)
Q Consensus       166 aSgS~D-----------GtVrIWDl~tg~~i--~~l~--h~~~-VtsVafSPdG~~LAsgS---dd-~-V~VWDl~t~~-  223 (767)
                      +....|           ..|+.|++.+....  ..++  .... ...+..++++++|+..+   .. . +++.|+.... 
T Consensus       185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~  264 (414)
T PF02897_consen  185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS  264 (414)
T ss_dssp             EEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred             EEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence            554432           24788888776432  2333  2233 66888999999887655   22 2 8888887751 


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       224 ~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      .......+......+....-+..+.+++.+
T Consensus       265 ~~~~~~~l~~~~~~~~~~v~~~~~~~yi~T  294 (414)
T PF02897_consen  265 PDAKPKLLSPREDGVEYYVDHHGDRLYILT  294 (414)
T ss_dssp             SS-SEEEEEESSSS-EEEEEEETTEEEEEE
T ss_pred             CcCCcEEEeCCCCceEEEEEccCCEEEEee
Confidence            011123344444444433333344444434

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.62  E-value=0.93  Score=47.86  Aligned_cols=142  Identities=12%  Similarity=0.050  Sum_probs=94.8

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCC-C--CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEE-----------
Q 004217           79 DARRGLASWVEAESLHHLRPKY-C--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-----------  144 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t-~--~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~-----------  144 (767)
                      ..+..|+.|.++| +.+++... .  ....+...|..+...++-+.|++-+ |+.+.++++..-.....           
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence            4678888888888 78888722 2  1223344499999999877776655 59999999876433221           


Q ss_pred             ---EccCCCCcEEEE-EccCCCcEEEEEeCCCeEEEEECCCC-----eEEEeecCCCCeEEEEEcCCCCEEEEEECCcEE
Q 004217          145 ---LHGHRRTPWVVR-FHPLNPTIIASGSLDHEVRLWNASTA-----ECIGSRDFYRPIASIAFHASGELLAVASGHKLY  215 (767)
Q Consensus       145 ---L~gH~~~V~sLa-fsP~dg~lLaSgS~DGtVrIWDl~tg-----~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~  215 (767)
                         -......+..++ -....+...+.....++|.+|.....     +..+++.....+.+++|.  ++.|+.|..++..
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~f~  160 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKGFY  160 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCceE
Confidence               011223344444 11223444444555668999887653     456667788999999998  6788888888899


Q ss_pred             EEEcCCCcc
Q 004217          216 IWRYNMREE  224 (767)
Q Consensus       216 VWDl~t~~~  224 (767)
                      +.|+.++..
T Consensus       161 ~idl~~~~~  169 (275)
T PF00780_consen  161 LIDLNTGSP  169 (275)
T ss_pred             EEecCCCCc
Confidence            999997654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.49  E-value=0.47  Score=50.57  Aligned_cols=136  Identities=14%  Similarity=0.030  Sum_probs=91.2

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCC
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~---gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~  151 (767)
                      +...+....++.++-.+.+.--|.+++.+.   --...|.+-+.- -|++++.|...|.+++.++++|.....+..-. .
T Consensus        17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~   94 (354)
T KOG4649|consen   17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-T   94 (354)
T ss_pred             EEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh-h
Confidence            334456777888888888888888776432   111222222221 47789999999999999999998777765332 2


Q ss_pred             cE-EEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCe-EEEEEcC-CCCEEEEEECCc
Q 004217          152 PW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI-ASIAFHA-SGELLAVASGHK  213 (767)
Q Consensus       152 V~-sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~V-tsVafSP-dG~~LAsgSdd~  213 (767)
                      |. .....+ ++.++..|+.|++....|.++..++.+.+-.+.+ .+-+..| ++.+.++...+.
T Consensus        95 vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~  158 (354)
T KOG4649|consen   95 VKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGA  158 (354)
T ss_pred             hccceEEcC-CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccce
Confidence            22 233456 8899999999999999999999999886644433 3344555 455444444444

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.48  E-value=0.15  Score=57.54  Aligned_cols=141  Identities=12%  Similarity=0.066  Sum_probs=107.8

Q ss_pred             EEEeCCCeEEEEeCCCC--C----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC------CeEEEE--------
Q 004217           85 ASWVEAESLHHLRPKYC--P----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT------GSCLKV--------  144 (767)
Q Consensus        85 aSgs~DgsIrlWd~~t~--~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t------g~~l~~--------  144 (767)
                      ++.-+++.|.++|....  +    -.-|..+|.++.+++-+..+++....|.|.-|..+.      .+....        
T Consensus       116 Vs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy  195 (558)
T KOG0882|consen  116 VSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLY  195 (558)
T ss_pred             eecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhh
Confidence            34457888899987643  1    235899999999999999999999999999998762      111111        


Q ss_pred             -EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec---------------------------------C
Q 004217          145 -LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---------------------------------F  190 (767)
Q Consensus       145 -L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~---------------------------------h  190 (767)
                       +...+....++.|+| ++..+.+-+.|..|++++.++++.++.+.                                 +
T Consensus       196 ~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~  274 (558)
T KOG0882|consen  196 GFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKH  274 (558)
T ss_pred             cccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhh
Confidence             223456788999999 89999999999999999999988755432                                 0


Q ss_pred             C-CCeEEEEEcCCCCEEEEEECCcEEEEEcCCCcccc
Q 004217          191 Y-RPIASIAFHASGELLAVASGHKLYIWRYNMREETS  226 (767)
Q Consensus       191 ~-~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~  226 (767)
                      . ..-+.+.|+..|++|+-++-=+|+|.++.+....+
T Consensus       275 ~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~r  311 (558)
T KOG0882|consen  275 GSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVR  311 (558)
T ss_pred             cCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEE
Confidence            0 01235789999999999988889999999887654

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.36  E-value=1.4  Score=49.78  Aligned_cols=138  Identities=14%  Similarity=0.184  Sum_probs=77.8

Q ss_pred             EEECCCCCeEEEEeC---CCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec
Q 004217          113 AAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD  189 (767)
Q Consensus       113 VaFSpDG~~LASgs~---DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~  189 (767)
                      =+|..||++|+.++.   ...+.+.|+++++..+.-.+-........++| +.+.++-...+..|+--|+.+.+....+.
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~  119 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEERVVYE  119 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence            467889987766655   45678889999885544333223334566788 66776666666789999999988766655


Q ss_pred             C-CCCeEEEEEc--CCCCEEEEEE----C-------------------CcEEEEEcCCCccccCCeEEecCCCCeEEEEE
Q 004217          190 F-YRPIASIAFH--ASGELLAVAS----G-------------------HKLYIWRYNMREETSSPRIVLRTRRSLRAVHF  243 (767)
Q Consensus       190 h-~~~VtsVafS--PdG~~LAsgS----d-------------------d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaF  243 (767)
                      . ...+....|.  .+++.++..-    +                   .+|...|+.+++.    ..+..-...+..+.|
T Consensus       120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~----~~v~~~~~wlgH~~f  195 (386)
T PF14583_consen  120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER----KVVFEDTDWLGHVQF  195 (386)
T ss_dssp             --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E----EEEEEESS-EEEEEE
T ss_pred             CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce----eEEEecCccccCccc
Confidence            3 3334345554  4566654331    0                   0256667777653    234455678899999


Q ss_pred             ccCCCeEEEEEe
Q 004217          244 HPHAAPLLLTAE  255 (767)
Q Consensus       244 SPDG~~LlaSgs  255 (767)
                      +|....+++-|-
T Consensus       196 sP~dp~li~fCH  207 (386)
T PF14583_consen  196 SPTDPTLIMFCH  207 (386)
T ss_dssp             ETTEEEEEEEEE
T ss_pred             CCCCCCEEEEec
Confidence            998888887765

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.31  E-value=0.038  Score=65.90  Aligned_cols=112  Identities=18%  Similarity=0.270  Sum_probs=83.2

Q ss_pred             EEEECCCCCeEEEEeC----CCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe
Q 004217          112 AAAFSPDGKTLASTHG----DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS  187 (767)
Q Consensus       112 sVaFSpDG~~LASgs~----DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~  187 (767)
                      -..|+|...+||.++.    .|.|.||- ++|++-+... ..-.+.+++||| ..-.|+.|-.-|.+.+|...+.+.-..
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccCh-HHHHHhhccccceeEEEecCCceeeee
Confidence            3578888888887764    57888884 6676443221 122356799999 777888999999999999876554333


Q ss_pred             -ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCcccc
Q 004217          188 -RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETS  226 (767)
Q Consensus       188 -l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~  226 (767)
                       ..|..+|..+.||++|..+.++..-+ |.+|.+.....+.
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q  137 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQ  137 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccc
Confidence             56899999999999999999998655 9999877544433

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.14  E-value=0.71  Score=49.09  Aligned_cols=142  Identities=15%  Similarity=0.195  Sum_probs=87.4

Q ss_pred             CeEEEEECCCCCeEEEEe---CCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEE-CCCCeE
Q 004217          109 STIAAAFSPDGKTLASTH---GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN-ASTAEC  184 (767)
Q Consensus       109 sVtsVaFSpDG~~LASgs---~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWD-l~tg~~  184 (767)
                      .+...++|+||+.+|...   ....++++...  .....+. -...+....|++ ++.+.+....+...+++. ..+++.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcc
Confidence            689999999999887766   33455555543  3232221 223678889999 677777666667777774 333332


Q ss_pred             EEe-e--c-CCCCeEEEEEcCCCCEEEEEE----CCcEEEEEcCCCcc-----ccCCeEEe-cCCCCeEEEEEccCCCeE
Q 004217          185 IGS-R--D-FYRPIASIAFHASGELLAVAS----GHKLYIWRYNMREE-----TSSPRIVL-RTRRSLRAVHFHPHAAPL  250 (767)
Q Consensus       185 i~~-l--~-h~~~VtsVafSPdG~~LAsgS----dd~V~VWDl~t~~~-----~~~~~~l~-~h~~~VtsVaFSPDG~~L  250 (767)
                      ... .  . ....|..+.+||||..+|.-.    +++|.+=-+.....     +..+..+. .....+.++.|.+++..+
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~  180 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV  180 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence            221 1  1 222899999999999877766    34466665432211     11111121 235688999999999866


Q ss_pred             EEEE
Q 004217          251 LLTA  254 (767)
Q Consensus       251 laSg  254 (767)
                      +.+.
T Consensus       181 V~~~  184 (253)
T PF10647_consen  181 VLGR  184 (253)
T ss_pred             EEeC
Confidence            5554

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.12  E-value=0.75  Score=51.68  Aligned_cols=102  Identities=10%  Similarity=-0.049  Sum_probs=66.3

Q ss_pred             CCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC--CCCeE
Q 004217          118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF--YRPIA  195 (767)
Q Consensus       118 DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h--~~~Vt  195 (767)
                      .+..++.++.++.+..+|..+|+.+....-  .....+..   .+..++.++.|+.+..+|..+++.+.....  .....
T Consensus       255 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~  329 (394)
T PRK11138        255 VGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLT  329 (394)
T ss_pred             ECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCccc
Confidence            355677778899999999999987765431  11222222   345677778899999999999987765331  11122


Q ss_pred             EEEEcCCCCEEEEEEC-CcEEEEEcCCCcccc
Q 004217          196 SIAFHASGELLAVASG-HKLYIWRYNMREETS  226 (767)
Q Consensus       196 sVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~  226 (767)
                      +...  .+.+|++++. +.|++.|..+++.+.
T Consensus       330 sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~  359 (394)
T PRK11138        330 APVL--YNGYLVVGDSEGYLHWINREDGRFVA  359 (394)
T ss_pred             CCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            2222  2345556664 449999999987654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=94.90  E-value=0.4  Score=53.86  Aligned_cols=132  Identities=12%  Similarity=0.033  Sum_probs=80.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC--CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCC-CCcEEEEE
Q 004217           81 RRGLASWVEAESLHHLRPKYCPLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-RTPWVVRF  157 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t~~L~--gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~-~~V~sLaf  157 (767)
                      +..++.++.++.+..+|..+++..  ........+.  .++..|+.++.|+.+..+|..+|+.+.....-. ........
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v  333 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL  333 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE
Confidence            345666677888888888776321  0111111122  246678888899999999999998765443211 11222223


Q ss_pred             ccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC-CCCeE-EEEEcCCCCEEEEEEC-CcEEEEEc
Q 004217          158 HPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-YRPIA-SIAFHASGELLAVASG-HKLYIWRY  219 (767)
Q Consensus       158 sP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h-~~~Vt-sVafSPdG~~LAsgSd-d~V~VWDl  219 (767)
                         .+..++.++.||.|.+.|..+|+.+..... ...+. ...+ .++ .|++++. +.|+.++.
T Consensus       334 ---~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~-~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        334 ---YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADD-KLLIQARDGTVYAITR  393 (394)
T ss_pred             ---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECC-EEEEEeCCceEEEEeC
Confidence               245677889999999999999998877643 22222 2222 234 5555554 45777653

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.60  E-value=0.26  Score=60.90  Aligned_cols=146  Identities=12%  Similarity=0.093  Sum_probs=94.9

Q ss_pred             CCeEEEEECCCCCeEEEE--eCCCeEEEEECCCCeE-----EEEEccC------CCCcEEEEEccCCCcEEEEEeCCCeE
Q 004217          108 RSTIAAAFSPDGKTLAST--HGDHTVKIIDCQTGSC-----LKVLHGH------RRTPWVVRFHPLNPTIIASGSLDHEV  174 (767)
Q Consensus       108 ~sVtsVaFSpDG~~LASg--s~DGtVrVWDl~tg~~-----l~~L~gH------~~~V~sLafsP~dg~lLaSgS~DGtV  174 (767)
                      -.+..+..++|++..++.  +++-.|..||+++-..     ..-|+.|      .....++.|+|.-....+.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            356667777787766554  3444899999875321     1112222      23456788998555567777889999


Q ss_pred             EEEECCCC-eEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCC--ccccCCeEEecCCCCeEEEEEccCCCeE
Q 004217          175 RLWNASTA-ECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMR--EETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (767)
Q Consensus       175 rIWDl~tg-~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~--~~~~~~~~l~~h~~~VtsVaFSPDG~~L  250 (767)
                      ++..+.-- ..+..+......++++|+|.|+.+++|-.++ +.-|...-.  ..+..+-..  ....|.+|+|--...++
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~--e~yrvl~v~Wl~t~efl  258 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVE--ENYRVLSVTWLSTQEFL  258 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcC--CCcceeEEEEecceeEE
Confidence            98877643 2333456778899999999999999998766 555543322  111111111  15789999999988887


Q ss_pred             EEEEe
Q 004217          251 LLTAE  255 (767)
Q Consensus       251 laSgs  255 (767)
                      ++-+.
T Consensus       259 vvy~n  263 (1405)
T KOG3630|consen  259 VVYGN  263 (1405)
T ss_pred             EEecc
Confidence            77554

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=94.60  E-value=1.1  Score=47.36  Aligned_cols=131  Identities=14%  Similarity=0.149  Sum_probs=80.4

Q ss_pred             CCCCeEEEEeCCCeEEEEECCC-CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEE---------
Q 004217          117 PDGKTLASTHGDHTVKIIDCQT-GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG---------  186 (767)
Q Consensus       117 pDG~~LASgs~DGtVrVWDl~t-g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~---------  186 (767)
                      ..++.|+.|..+| +.+++... .+.....  +...|..+..-+ +-+.++.-+ |+.+.++++..-....         
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence            3578999999998 89999833 3333332  233499999998 666666554 6999999987644333         


Q ss_pred             ------eecCCCCeEEEE---EcCCCCEEEEEECCcEEEEEcCCCcccc-CCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          187 ------SRDFYRPIASIA---FHASGELLAVASGHKLYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       187 ------~l~h~~~VtsVa---fSPdG~~LAsgSdd~V~VWDl~t~~~~~-~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                            .+.....+...+   -...+.+|+++...+|.+|......... ...........+.+++|.  ++.++.+.
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~  155 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT  155 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe
Confidence                  122233444444   2233457777777788888776532110 112223446788999999  34455543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.56  E-value=0.97  Score=54.02  Aligned_cols=129  Identities=11%  Similarity=0.061  Sum_probs=74.1

Q ss_pred             CeEEEEECCCCCeEEEEeCC-CeEEEE-----------ECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEE
Q 004217          109 STIAAAFSPDGKTLASTHGD-HTVKII-----------DCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (767)
Q Consensus       109 sVtsVaFSpDG~~LASgs~D-GtVrVW-----------Dl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrI  176 (767)
                      ..+.-.|+|||+.|++.... ..+++.           +++.+....   ...+.|..++|+| |+..++... ++.|.+
T Consensus       398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~V  472 (591)
T PRK13616        398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII-GGKVYL  472 (591)
T ss_pred             CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEE
Confidence            47889999999988877533 223333           333332211   2346799999999 777766655 567766


Q ss_pred             ---EECCCCeEEE----eec--CCCCeEEEEEcCCCCEEEEEECCc--EEEEEcCCCccccCCeEEec--CCCCeEEEEE
Q 004217          177 ---WNASTAECIG----SRD--FYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLR--TRRSLRAVHF  243 (767)
Q Consensus       177 ---WDl~tg~~i~----~l~--h~~~VtsVafSPdG~~LAsgSdd~--V~VWDl~t~~~~~~~~~l~~--h~~~VtsVaF  243 (767)
                         -....|+...    .+.  ....+..+.|..++.+++...+..  +...++..... .   .+..  ....+.+|+-
T Consensus       473 a~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~-~---~~~~~n~~~~v~~vaa  548 (591)
T PRK13616        473 AVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNS-D---ALPSRNLSAPVVAVAA  548 (591)
T ss_pred             EEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccc-c---ccCCCCccCceEEEec
Confidence               4434454111    121  233468899999999664433333  44444443321 1   1122  2566778887


Q ss_pred             ccC
Q 004217          244 HPH  246 (767)
Q Consensus       244 SPD  246 (767)
                      +++
T Consensus       549 ~~~  551 (591)
T PRK13616        549 SPS  551 (591)
T ss_pred             CCc
Confidence            763

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.55  E-value=0.29  Score=56.37  Aligned_cols=134  Identities=12%  Similarity=0.116  Sum_probs=91.9

Q ss_pred             CCCCCeE-EEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCc-------EEEEEeCCCeEEEEECCCCeE--E
Q 004217          116 SPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT-------IIASGSLDHEVRLWNASTAEC--I  185 (767)
Q Consensus       116 SpDG~~L-ASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~-------lLaSgS~DGtVrIWDl~tg~~--i  185 (767)
                      ..+.++| .++.....++-.|++.|+.+..++-|.. |.-+.+.| +.+       .-+.|-.|+.|.-||.+-...  +
T Consensus       342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl  419 (644)
T KOG2395|consen  342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL  419 (644)
T ss_pred             ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccCccee
Confidence            3344544 4455556788899999999999987766 77788887 322       233466788999999984222  1


Q ss_pred             Ee-----ecCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          186 GS-----RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       186 ~~-----l~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ..     +.......|.+-..+| +|++|+. +.|++||- .+...  ...+.+-...|..|..+.||++|++||.
T Consensus       420 ~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~A--KTAlPgLG~~I~hVdvtadGKwil~Tc~  491 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRA--KTALPGLGDAIKHVDVTADGKWILATCK  491 (644)
T ss_pred             eeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhh--hhcccccCCceeeEEeeccCcEEEEecc
Confidence            11     1233445566655555 6777775 55999996 33322  2456677899999999999999999997

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.46  E-value=3.3  Score=45.57  Aligned_cols=145  Identities=13%  Similarity=0.168  Sum_probs=91.3

Q ss_pred             CCeEEEEECCCCCeEEEEeC------C---CeEEEEECC-CCeEEEEEccCCCCcEEEEEccCCCcEE-EEEeCCCeEEE
Q 004217          108 RSTIAAAFSPDGKTLASTHG------D---HTVKIIDCQ-TGSCLKVLHGHRRTPWVVRFHPLNPTII-ASGSLDHEVRL  176 (767)
Q Consensus       108 ~sVtsVaFSpDG~~LASgs~------D---GtVrVWDl~-tg~~l~~L~gH~~~V~sLafsP~dg~lL-aSgS~DGtVrI  176 (767)
                      ...+++...|+|.+-+....      +   ..-.||-+. .+..++.+..+-..-+.|+|+| +++.+ ++=+..+.|.-
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r  189 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIHR  189 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEEE
Confidence            45678889999987665443      0   112344444 5666777777666778999999 66544 44455688888


Q ss_pred             EECCC--CeE---E-Ee-e-cCCCCeEEEEEcCCCCEEEEEECC--cEEEEEcCCCccccCCeEEecCCCCeEEEEEc-c
Q 004217          177 WNAST--AEC---I-GS-R-DFYRPIASIAFHASGELLAVASGH--KLYIWRYNMREETSSPRIVLRTRRSLRAVHFH-P  245 (767)
Q Consensus       177 WDl~t--g~~---i-~~-l-~h~~~VtsVafSPdG~~LAsgSdd--~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFS-P  245 (767)
                      |++..  +..   . .. + ...+..-.++.+.+|.+.+++..+  +|.+|+.. ++.+.   .+.-....+++++|- |
T Consensus       190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~---~i~lP~~~~t~~~FgG~  265 (307)
T COG3386         190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLG---EIKLPVKRPTNPAFGGP  265 (307)
T ss_pred             EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEE---EEECCCCCCccceEeCC
Confidence            87762  111   1 11 1 134555677888899877554443  59999988 66544   344444677888886 4


Q ss_pred             CCCeEEEEEeeC
Q 004217          246 HAAPLLLTAEVN  257 (767)
Q Consensus       246 DG~~LlaSgsvw  257 (767)
                      +.+.|.+++...
T Consensus       266 ~~~~L~iTs~~~  277 (307)
T COG3386         266 DLNTLYITSARS  277 (307)
T ss_pred             CcCEEEEEecCC
Confidence            566677766543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.28  E-value=2.1  Score=46.05  Aligned_cols=87  Identities=16%  Similarity=0.099  Sum_probs=43.3

Q ss_pred             eEEEEECCCCCeEEEEeCCC--eEEEEECCCCeEEEEEccCCC-CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEE
Q 004217          110 TIAAAFSPDGKTLASTHGDH--TVKIIDCQTGSCLKVLHGHRR-TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG  186 (767)
Q Consensus       110 VtsVaFSpDG~~LASgs~DG--tVrVWDl~tg~~l~~L~gH~~-~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~  186 (767)
                      ...+.|..+|.++-+.+.-|  .|+.+|+.+|+.+....-... ---.+...  +++++.-.-.++...+||..+.+.+.
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence            45677766777777776655  577788888776544321111 11122222  22333333445555555555555555


Q ss_pred             eecCCCCeEEEE
Q 004217          187 SRDFYRPIASIA  198 (767)
Q Consensus       187 ~l~h~~~VtsVa  198 (767)
                      .+.....=+.++
T Consensus       125 ~~~y~~EGWGLt  136 (264)
T PF05096_consen  125 TFPYPGEGWGLT  136 (264)
T ss_dssp             EEE-SSS--EEE
T ss_pred             EEecCCcceEEE
Confidence            544444434444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=93.93  E-value=2.7  Score=44.90  Aligned_cols=142  Identities=13%  Similarity=0.074  Sum_probs=79.1

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCC------------C---CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC-
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYC------------P---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-  138 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~------------~---L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t-  138 (767)
                      ++...++.++++--.++.+.+.+....            +   ...+...+-.++|++.++.|+.+-.....+||.+.. 
T Consensus        70 I~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~  149 (248)
T PF06977_consen   70 ITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGF  149 (248)
T ss_dssp             EEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEEST
T ss_pred             EEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccc
Confidence            334344555554434666666665221            1   123556799999999888887777776667776653 


Q ss_pred             --CeEEE--EE------ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCC----------CCeEEEE
Q 004217          139 --GSCLK--VL------HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY----------RPIASIA  198 (767)
Q Consensus       139 --g~~l~--~L------~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~----------~~VtsVa  198 (767)
                        ...+.  ..      ......+.++.++|..+++++-...+..|.++| .+|+.+..+...          .....|+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa  228 (248)
T PF06977_consen  150 PGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIA  228 (248)
T ss_dssp             T-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEE
T ss_pred             cCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEE
Confidence              22121  11      123456889999998888888889999999999 677776654321          2578999


Q ss_pred             EcCCCCEEEEEECCcEEEE
Q 004217          199 FHASGELLAVASGHKLYIW  217 (767)
Q Consensus       199 fSPdG~~LAsgSdd~V~VW  217 (767)
                      |+++|++.+++--+..++|
T Consensus       229 ~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  229 FDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             E-TT--EEEEETTTEEEEE
T ss_pred             ECCCCCEEEEcCCceEEEe
Confidence            9999977666544434443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.92  E-value=4  Score=44.89  Aligned_cols=146  Identities=14%  Similarity=0.105  Sum_probs=77.3

Q ss_pred             CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEEC-CCC
Q 004217          104 SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA-STA  182 (767)
Q Consensus       104 ~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl-~tg  182 (767)
                      .+-.+.+..+.-++||++++++..-....-||--...-...-+.-...|..+.|.| ++.+.+.+ ..|.|+.=+. ...
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDG  218 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEE
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCc
Confidence            34567899999999999999887766667787543222222233567899999999 76666644 8888888772 222


Q ss_pred             eEEEe--ec---CCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217          183 ECIGS--RD---FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       183 ~~i~~--l~---h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla  252 (767)
                      +....  ..   ....+..++|.+++...++|+.+.+ +...+.++..++......-...++.|.|.++.+-++.
T Consensus       219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l  292 (302)
T PF14870_consen  219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL  292 (302)
T ss_dssp             EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE
T ss_pred             cccccccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE
Confidence            22221  11   2334789999999988888876653 3444555443311111223556889999877654444

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.88  E-value=2.9  Score=46.38  Aligned_cols=145  Identities=16%  Similarity=0.103  Sum_probs=84.5

Q ss_pred             CCCeEEEEECCCCCeEEEEeC--C---CeEEEEECCCCeEEEEEcc-CCCC---cEEEEEc-cCCCcEEEEEeCCCeEEE
Q 004217          107 PRSTIAAAFSPDGKTLASTHG--D---HTVKIIDCQTGSCLKVLHG-HRRT---PWVVRFH-PLNPTIIASGSLDHEVRL  176 (767)
Q Consensus       107 ~~sVtsVaFSpDG~~LASgs~--D---GtVrVWDl~tg~~l~~L~g-H~~~---V~sLafs-P~dg~lLaSgS~DGtVrI  176 (767)
                      ..-+..+.|++|++.|+..-.  +   ..+.++|..++++...++. ....   ...+.|. +++..++.....||.-+|
T Consensus       183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl  262 (353)
T PF00930_consen  183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL  262 (353)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred             ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence            345889999999984544332  2   3477778887765433322 2222   2355565 646667777778876555


Q ss_pred             E--ECCCCeEEEeecCCCCeEE-EEEcCCCCEEEEEECC----c--EEEEEcC-CCccccCCeEEecCCCCeEEEEEccC
Q 004217          177 W--NASTAECIGSRDFYRPIAS-IAFHASGELLAVASGH----K--LYIWRYN-MREETSSPRIVLRTRRSLRAVHFHPH  246 (767)
Q Consensus       177 W--Dl~tg~~i~~l~h~~~Vts-VafSPdG~~LAsgSdd----~--V~VWDl~-t~~~~~~~~~l~~h~~~VtsVaFSPD  246 (767)
                      |  +...+.........-.|.. +.|+++++.|...+..    .  |+.-++. .+...    .+.........+.|||+
T Consensus       263 y~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~----~LT~~~~~~~~~~~Spd  338 (353)
T PF00930_consen  263 YLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK----CLTCEDGDHYSASFSPD  338 (353)
T ss_dssp             EEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEE----ESSTTSSTTEEEEE-TT
T ss_pred             EEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE----eccCCCCCceEEEECCC
Confidence            5  5555654444445556744 6789988865544421    2  6666666 44332    22222222269999999


Q ss_pred             CCeEEEEEe
Q 004217          247 AAPLLLTAE  255 (767)
Q Consensus       247 G~~LlaSgs  255 (767)
                      +++++.+++
T Consensus       339 g~y~v~~~s  347 (353)
T PF00930_consen  339 GKYYVDTYS  347 (353)
T ss_dssp             SSEEEEEEE
T ss_pred             CCEEEEEEc
Confidence            999988775

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=93.77  E-value=0.026  Score=65.77  Aligned_cols=130  Identities=16%  Similarity=0.197  Sum_probs=89.0

Q ss_pred             CCCeEEEEeCCCC--------CCCC-CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEcc
Q 004217           89 EAESLHHLRPKYC--------PLSP-PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP  159 (767)
Q Consensus        89 ~DgsIrlWd~~t~--------~L~g-H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP  159 (767)
                      .|..+.+||..+.        .+.+ ......+++|-.|.+++.+|.....++++|++... .....-.+..+..+...|
T Consensus       127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp  205 (783)
T KOG1008|consen  127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDP  205 (783)
T ss_pred             ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecC
Confidence            4667999999765        2333 44566789999999999999999999999987321 111112234556677777


Q ss_pred             CCCcEEEEEeCCCeEEEEE-CCCC-eEEEeecC-----CCCeEEEEEcCCCC-EEEEEECCc--EEEEEcC
Q 004217          160 LNPTIIASGSLDHEVRLWN-ASTA-ECIGSRDF-----YRPIASIAFHASGE-LLAVASGHK--LYIWRYN  220 (767)
Q Consensus       160 ~dg~lLaSgS~DGtVrIWD-l~tg-~~i~~l~h-----~~~VtsVafSPdG~-~LAsgSdd~--V~VWDl~  220 (767)
                      ...+++++-. |+.|-+|| .++- ..+..+.+     ...+..++|+|... .+++.+.+.  |+.+|+.
T Consensus       206 ~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  206 FSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            6778888765 99999999 4332 22222222     23589999999765 666666544  9999875

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.61  E-value=0.3  Score=60.17  Aligned_cols=97  Identities=18%  Similarity=0.175  Sum_probs=67.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC--CC---CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEE
Q 004217           80 ARRGLASWVEAESLHHLRPKYC--PL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~--~L---~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~s  154 (767)
                      .+..++.++..|-+-..|....  ++   ..-.++|++++|+.||++++.|-.+|.|.+||...++.++.+..|..+...
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            3445555665565555554432  11   123468999999999999999999999999999999999888777665544


Q ss_pred             E---EEccCCCcEEEEEeCCCeEEEEEC
Q 004217          155 V---RFHPLNPTIIASGSLDHEVRLWNA  179 (767)
Q Consensus       155 L---afsP~dg~lLaSgS~DGtVrIWDl  179 (767)
                      +   .+.. ++..++++...|.  +|.+
T Consensus       178 vi~v~~t~-~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTS-QNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence            3   3444 4456777776665  5543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.53  E-value=1.6  Score=46.75  Aligned_cols=128  Identities=9%  Similarity=-0.024  Sum_probs=87.4

Q ss_pred             CCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeE-EE
Q 004217          119 GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SI  197 (767)
Q Consensus       119 G~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~Vt-sV  197 (767)
                      ..+++.|+..+.+.-.|..+|+....-. -...+.+-+.-  -+++++.|...|.+.+.+.++|+....+.....|. ..
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence            4577888999999999999998765432 12233332222  26789999999999999999998887766444443 24


Q ss_pred             EEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEcc-CCCeEEE
Q 004217          198 AFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHP-HAAPLLL  252 (767)
Q Consensus       198 afSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSP-DG~~Lla  252 (767)
                      ..++++.++..|+.|+ .+..|.++...+.   ...-......+-+..| ++...++
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~cVy---kskcgG~~f~sP~i~~g~~sly~a  153 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVY---KSKCGGGTFVSPVIAPGDGSLYAA  153 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccceEE---ecccCCceeccceecCCCceEEEE
Confidence            4678999999999766 9999999887655   2222223333445555 5554443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.48  E-value=5.4  Score=43.36  Aligned_cols=170  Identities=16%  Similarity=0.173  Sum_probs=104.9

Q ss_pred             EEEcCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECC-CCCeEEEEeCCCe-EEEEECCCCeEEEEEccCCCCc-
Q 004217           76 AGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSP-DGKTLASTHGDHT-VKIIDCQTGSCLKVLHGHRRTP-  152 (767)
Q Consensus        76 A~sd~g~~LaSgs~DgsIrlWd~~t~~L~gH~~sVtsVaFSp-DG~~LASgs~DGt-VrVWDl~tg~~l~~L~gH~~~V-  152 (767)
                      ...++.-.++..+++|++..--.       -......|+|+| ...-++.+-.-|+ ..++|..+.+...++...++.- 
T Consensus        43 ~~~dgs~g~a~~~eaGk~v~~~~-------lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHf  115 (366)
T COG3490          43 DARDGSFGAATLSEAGKIVFATA-------LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHF  115 (366)
T ss_pred             eccCCceeEEEEccCCceeeeee-------cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCcee
Confidence            34456667788888888753221       123345677777 4445555555444 5678888877665553222211 


Q ss_pred             -EEEEEccCCCcEEEEEeCC-----CeEEEEECCCC-eEEEeec-CCCCeEEEEEcCCCCEEEEEECC------------
Q 004217          153 -WVVRFHPLNPTIIASGSLD-----HEVRLWNASTA-ECIGSRD-FYRPIASIAFHASGELLAVASGH------------  212 (767)
Q Consensus       153 -~sLafsP~dg~lLaSgS~D-----GtVrIWDl~tg-~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd------------  212 (767)
                       -.=.||| ++.+|...-.|     |.|-|||.+.+ +.+.++. |.-....+.|.+||+.++.+..+            
T Consensus       116 yGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~l  194 (366)
T COG3490         116 YGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTEL  194 (366)
T ss_pred             ecccccCC-CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCcccc
Confidence             1235899 88888776544     67999999843 2333333 55566788999999998877531            


Q ss_pred             -------cEEEEEcCCCccccCCeEEe--cCCCCeEEEEEccCCCeEEEEEe
Q 004217          213 -------KLYIWRYNMREETSSPRIVL--RTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       213 -------~V~VWDl~t~~~~~~~~~l~--~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                             .+.+.|..+++.+.+. .+.  .+.-.|+.++..+||. ++..+.
T Consensus       195 NldsMePSlvlld~atG~liekh-~Lp~~l~~lSiRHld~g~dgt-vwfgcQ  244 (366)
T COG3490         195 NLDSMEPSLVLLDAATGNLIEKH-TLPASLRQLSIRHLDIGRDGT-VWFGCQ  244 (366)
T ss_pred             chhhcCccEEEEeccccchhhhc-cCchhhhhcceeeeeeCCCCc-EEEEEE
Confidence                   1455565666554421 222  3456789999999998 555554

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.29  E-value=4  Score=45.91  Aligned_cols=199  Identities=14%  Similarity=0.008  Sum_probs=106.9

Q ss_pred             eeecccccceecC-CcceEEEEEEcCCCEEEEE-eCCC----eEEEEeCCCCCCCCCC--CC-eEEEEECCCCCeEEEEe
Q 004217           56 KRLLGETARKCSG-SFSQIFEAGRDARRGLASW-VEAE----SLHHLRPKYCPLSPPP--RS-TIAAAFSPDGKTLASTH  126 (767)
Q Consensus        56 k~~wd~~~~~~~~-s~s~~~vA~sd~g~~LaSg-s~Dg----sIrlWd~~t~~L~gH~--~s-VtsVaFSpDG~~LASgs  126 (767)
                      +.++|.+...-.. ......+.++.++++++-+ +..|    .|++.|+.++++....  .. ...+.|.+|++.|+...
T Consensus       109 evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~  188 (414)
T PF02897_consen  109 EVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTR  188 (414)
T ss_dssp             EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEE
T ss_pred             EEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEE
Confidence            4555555433332 1122245666777776643 4444    4999999988543211  11 12399999998887665


Q ss_pred             CCC-----------eEEEEECCCCeE--EEEEccCCCC--cEEEEEccCCCcEEEEE-eCC---CeEEEEECCCC-----
Q 004217          127 GDH-----------TVKIIDCQTGSC--LKVLHGHRRT--PWVVRFHPLNPTIIASG-SLD---HEVRLWNASTA-----  182 (767)
Q Consensus       127 ~DG-----------tVrVWDl~tg~~--l~~L~gH~~~--V~sLafsP~dg~lLaSg-S~D---GtVrIWDl~tg-----  182 (767)
                      .|.           .|+.|++.+...  ...+.+....  ...+..++ ++++++.. ...   ..+.+.|+..+     
T Consensus       189 ~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~  267 (414)
T PF02897_consen  189 FDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDA  267 (414)
T ss_dssp             CSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-
T ss_pred             eCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcC
Confidence            433           488888877632  3445444433  45788888 77765543 332   35788888875     


Q ss_pred             eEEEeecCCCCeEEEEEcCCCCEEEEEECC----cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          183 ECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       183 ~~i~~l~h~~~VtsVafSPdG~~LAsgSdd----~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +..........+....-+..+.+++....+    +|...++...........+..+...+.-..+...+.+|++.-.
T Consensus       268 ~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~  344 (414)
T PF02897_consen  268 KPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR  344 (414)
T ss_dssp             SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEE
T ss_pred             CcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEE
Confidence            333333433444333323344455544432    2777777776542212255666665444455556676776543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=93.22  E-value=5.8  Score=42.36  Aligned_cols=170  Identities=11%  Similarity=0.116  Sum_probs=84.5

Q ss_pred             EEEEEcCCCEEEEEeCCCeE-EEEeCCCCCCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe------EEEEEc
Q 004217           74 FEAGRDARRGLASWVEAESL-HHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS------CLKVLH  146 (767)
Q Consensus        74 ~vA~sd~g~~LaSgs~DgsI-rlWd~~t~~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~------~l~~L~  146 (767)
                      ++++.+....|+.-+.+|.| +.+.     +.+ .+..-.|++.-++.++++--.++.+.++++....      ....+.
T Consensus        36 LfaV~d~~~~i~els~~G~vlr~i~-----l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~  109 (248)
T PF06977_consen   36 LFAVQDEPGEIYELSLDGKVLRRIP-----LDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKIS  109 (248)
T ss_dssp             EEEEETTTTEEEEEETT--EEEEEE------SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE
T ss_pred             EEEEECCCCEEEEEcCCCCEEEEEe-----CCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEe
Confidence            44555555555555555443 2222     233 3567889998788777665568999999884321      112221


Q ss_pred             -----cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC---CeEEEe-----e----cCCCCeEEEEEcCCCCEEEEE
Q 004217          147 -----GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST---AECIGS-----R----DFYRPIASIAFHASGELLAVA  209 (767)
Q Consensus       147 -----gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t---g~~i~~-----l----~h~~~VtsVafSPdG~~LAsg  209 (767)
                           .+...+-.++|+| ..+.|+.+-...-..||.+..   ...+..     +    .....+.+++++|....|..-
T Consensus       110 l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliL  188 (248)
T PF06977_consen  110 LGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLIL  188 (248)
T ss_dssp             ---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEE
T ss_pred             cccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEE
Confidence                 2445689999999 555555556666666666553   222211     1    134567899999987655555


Q ss_pred             EC-Cc-EEEEEcCCCccccCCeEEec--C-----CCCeEEEEEccCCCeEEE
Q 004217          210 SG-HK-LYIWRYNMREETSSPRIVLR--T-----RRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       210 Sd-d~-V~VWDl~t~~~~~~~~~l~~--h-----~~~VtsVaFSPDG~~Lla  252 (767)
                      |+ .+ |.++| .+++.+. ...+..  |     -..--.|+|.++|+.+++
T Consensus       189 S~es~~l~~~d-~~G~~~~-~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv  238 (248)
T PF06977_consen  189 SDESRLLLELD-RQGRVVS-SLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV  238 (248)
T ss_dssp             ETTTTEEEEE--TT--EEE-EEE-STTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred             ECCCCeEEEEC-CCCCEEE-EEEeCCcccCcccccCCccEEEECCCCCEEEE
Confidence            53 33 88888 4444333 112221  1     124678999999984443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.87  E-value=1.6  Score=51.28  Aligned_cols=142  Identities=13%  Similarity=0.200  Sum_probs=88.0

Q ss_pred             CCeEEEEECCCCCeEEEEe---CCCeEEEEECCCCeEEEEEccCCCCcEEEEEccC---CCcEEEEEeCCCeEEEEECCC
Q 004217          108 RSTIAAAFSPDGKTLASTH---GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL---NPTIIASGSLDHEVRLWNAST  181 (767)
Q Consensus       108 ~sVtsVaFSpDG~~LASgs---~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~---dg~lLaSgS~DGtVrIWDl~t  181 (767)
                      .+|..++|. ||+.++-..   .+|.+++=|   .+.+..|    ..|..+.|.|-   +..-++.....+.|.+|.+.-
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            478899998 676654332   234444322   2334444    34889999983   233455667788899998862


Q ss_pred             -----CeEEEe----ecCCCCe--EEEEEcCCCCEEEEEECCcE-EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCe
Q 004217          182 -----AECIGS----RDFYRPI--ASIAFHASGELLAVASGHKL-YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAP  249 (767)
Q Consensus       182 -----g~~i~~----l~h~~~V--tsVafSPdG~~LAsgSdd~V-~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~  249 (767)
                           ++.+..    +...-+|  ..+.|||....|++-....+ .+++++.....  ...-....+.|.+.+|.+||++
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~sr--VkaDi~~~G~IhCACWT~DG~R  169 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSR--VKADIKTSGLIHCACWTKDGQR  169 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCce--EEEeccCCceEEEEEecCcCCE
Confidence                 222221    2112222  35679999999988876664 45565543321  1233456788999999999999


Q ss_pred             EEEEEe------eCCc
Q 004217          250 LLLTAE------VNDL  259 (767)
Q Consensus       250 LlaSgs------vwdl  259 (767)
                      |+++-+      +||-
T Consensus       170 LVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  170 LVVAVGSSLHSYIWDS  185 (671)
T ss_pred             EEEEeCCeEEEEEecC
Confidence            887654      7764

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=92.82  E-value=1.4  Score=53.98  Aligned_cols=129  Identities=13%  Similarity=0.108  Sum_probs=84.2

Q ss_pred             CCCeEEEEeCCCCCC----CCCCC-CeEEEEECC-----CCCeEEEEeCCCeEEEEECCCC--eEEE-EEc--cCCCCcE
Q 004217           89 EAESLHHLRPKYCPL----SPPPR-STIAAAFSP-----DGKTLASTHGDHTVKIIDCQTG--SCLK-VLH--GHRRTPW  153 (767)
Q Consensus        89 ~DgsIrlWd~~t~~L----~gH~~-sVtsVaFSp-----DG~~LASgs~DGtVrVWDl~tg--~~l~-~L~--gH~~~V~  153 (767)
                      ....|...|++++++    ..|.. +|..++-..     +....+.|-.+..+..||.+-.  +++. ..+  ..+....
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            456677777777643    23332 255443321     2334566778889999998753  2221 111  1233456


Q ss_pred             EEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-e-cCCCCeEEEEEcCCCCEEEEEECCcEEEEEcC
Q 004217          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-R-DFYRPIASIAFHASGELLAVASGHKLYIWRYN  220 (767)
Q Consensus       154 sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l-~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~  220 (767)
                      |++-.  ...+||.|+.+|.||+||-- ++.-++ + +...+|..|..+.||+||++.+..-|.++|+.
T Consensus       582 ~~aTt--~~G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  582 CFATT--EDGYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL  647 (794)
T ss_pred             EEEec--CCceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence            66554  46689999999999999943 332222 3 35789999999999999998888888888863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=92.61  E-value=2.9  Score=45.54  Aligned_cols=130  Identities=9%  Similarity=0.138  Sum_probs=76.4

Q ss_pred             CCeEEEEeC----------CCeEEEEECCCC----eEEEEE--ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC
Q 004217          119 GKTLASTHG----------DHTVKIIDCQTG----SCLKVL--HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA  182 (767)
Q Consensus       119 G~~LASgs~----------DGtVrVWDl~tg----~~l~~L--~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg  182 (767)
                      ..+|+.|..          .|.|.++++...    ..+..+  ....+.|++++-.  ++.++++  .++.|.+|++...
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~--~g~~l~v~~l~~~  117 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVA--VGNKLYVYDLDNS  117 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEE--ETTEEEEEEEETT
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEe--ecCEEEEEEccCc
Confidence            457777654          289999999884    223222  2356889888755  3444443  3588999999988


Q ss_pred             e-EEEee--cCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCcc-ccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          183 E-CIGSR--DFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREE-TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       183 ~-~i~~l--~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~-~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      + ....-  .....+.++...  +++|++|.- +++.++.++.... .. ..........++++.|-+|++.++++..
T Consensus       118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~-~va~d~~~~~v~~~~~l~d~~~~i~~D~  192 (321)
T PF03178_consen  118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLI-LVARDYQPRWVTAAEFLVDEDTIIVGDK  192 (321)
T ss_dssp             SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EE-EEEEESS-BEEEEEEEE-SSSEEEEEET
T ss_pred             ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEE-EEEecCCCccEEEEEEecCCcEEEEEcC
Confidence            7 55443  334456666554  668888874 5577665544221 22 1112223567899999877765555543

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.51  E-value=2.2  Score=51.17  Aligned_cols=111  Identities=16%  Similarity=0.153  Sum_probs=72.3

Q ss_pred             CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc-cCCCCcEEEEEccC-CCcEEEEEeCCCeEEEEECC-----C
Q 004217          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-GHRRTPWVVRFHPL-NPTIIASGSLDHEVRLWNAS-----T  181 (767)
Q Consensus       109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~-gH~~~V~sLafsP~-dg~lLaSgS~DGtVrIWDl~-----t  181 (767)
                      ...-+.-|.-++..++-+....+.|||.+.+.....-. ...+.|..+.|... +++.+++.+-.+.|.++--.     .
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            34445555545544444445689999999887432221 34678999998631 67788888889999998432     1


Q ss_pred             ----CeEEEee---cC-CCCeEEEEEcCCCCEEEEEECCcEEEEEcC
Q 004217          182 ----AECIGSR---DF-YRPIASIAFHASGELLAVASGHKLYIWRYN  220 (767)
Q Consensus       182 ----g~~i~~l---~h-~~~VtsVafSPdG~~LAsgSdd~V~VWDl~  220 (767)
                          ...++.+   .+ ..+|.+..|.++|.++ +|+++.+.|+|-.
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~Lv-V~sGNqlfv~dk~  156 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLV-VGSGNQLFVFDKW  156 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEE-EEeCCEEEEECCC
Confidence                2233333   23 3678899999998554 5667888888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=92.45  E-value=6.9  Score=45.62  Aligned_cols=99  Identities=11%  Similarity=0.114  Sum_probs=64.3

Q ss_pred             eEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEE-----------------EeCCCeEEEEECCCCe
Q 004217          121 TLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIAS-----------------GSLDHEVRLWNASTAE  183 (767)
Q Consensus       121 ~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaS-----------------gS~DGtVrIWDl~tg~  183 (767)
                      .++.++.+|.+...|.++|+.+.....-   ...+..+|  +.+++.                 ...+|.+.-.|+.+++
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~  377 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK  377 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence            5778888999999999999988765421   11123333  222221                 1246789999999999


Q ss_pred             EEEeecCC---------CCe--EEEEEcCCCCEEEEEEC-CcEEEEEcCCCcccc
Q 004217          184 CIGSRDFY---------RPI--ASIAFHASGELLAVASG-HKLYIWRYNMREETS  226 (767)
Q Consensus       184 ~i~~l~h~---------~~V--tsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~  226 (767)
                      .+......         .+.  ..+.  -.+.+|++++. +.|+.+|.++++.+.
T Consensus       378 ~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW  430 (488)
T cd00216         378 VVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELW  430 (488)
T ss_pred             EeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceee
Confidence            88776533         111  1122  24566777764 559999999998766

The alignment model contains an 8-bladed beta-propeller.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=92.43  E-value=6.3  Score=43.42  Aligned_cols=134  Identities=19%  Similarity=0.196  Sum_probs=75.9

Q ss_pred             EEEEEeCCCeEEEEeCCCCCC--CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc----cCC-CCcEEE
Q 004217           83 GLASWVEAESLHHLRPKYCPL--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH----GHR-RTPWVV  155 (767)
Q Consensus        83 ~LaSgs~DgsIrlWd~~t~~L--~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~----gH~-~~V~sL  155 (767)
                      .+++-...+.|..|+..+++.  -.+.+.+.++..-.++..|+++..  -+.+++.+++..+..+.    +.. ...+.+
T Consensus        39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~  116 (307)
T COG3386          39 LLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDG  116 (307)
T ss_pred             EEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCce
Confidence            344445555666666654421  123344455444444555555443  46777877666533332    111 345678


Q ss_pred             EEccCCCcEEEEEeC-----------CCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEEC--CcEEEEEcC
Q 004217          156 RFHPLNPTIIASGSL-----------DHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HKLYIWRYN  220 (767)
Q Consensus       156 afsP~dg~lLaSgS~-----------DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~  220 (767)
                      ...| ++.+.++...           -|.|...|. .+..++.+. +-..-+.|+||||++.|..+..  +.|.-|++.
T Consensus       117 ~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         117 VVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             eEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            8899 7777666443           133333343 455554443 3455678999999998888765  447777775

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=92.35  E-value=1.6  Score=40.92  Aligned_cols=93  Identities=12%  Similarity=0.051  Sum_probs=64.3

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCC-CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEE
Q 004217           79 DARRGLASWVEAESLHHLRPKYCPL-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF  157 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~~L-~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLaf  157 (767)
                      ++...|+.|++|..||+|+-..... ..-.+.|+.+.-... ..++.+-.+|+|-+|+-  ...+...+. +..+.++.+
T Consensus        13 dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKS-K~~~~~~~~   88 (111)
T PF14783_consen   13 DGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKS-KNQVTSMAF   88 (111)
T ss_pred             CCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeecc-CCCeEEEEE
Confidence            3458899999999999999865421 123456777777765 67899999999999985  334555553 334666665


Q ss_pred             ccCC---CcEEEEEeCCCeEE
Q 004217          158 HPLN---PTIIASGSLDHEVR  175 (767)
Q Consensus       158 sP~d---g~lLaSgS~DGtVr  175 (767)
                      ...+   ...|++|-.+|.|-
T Consensus        89 ~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   89 YDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EcCCCCCceEEEEEecCCeEE
Confidence            4322   23788888888764

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.30  E-value=3.9  Score=45.79  Aligned_cols=100  Identities=15%  Similarity=0.101  Sum_probs=56.1

Q ss_pred             CCeEEEEECCCCCeEEEEe-----------CCC-eEEEEECCC--Ce--EEEEEccCCCCcEEEEEccCCCcEEEEEeCC
Q 004217          108 RSTIAAAFSPDGKTLASTH-----------GDH-TVKIIDCQT--GS--CLKVLHGHRRTPWVVRFHPLNPTIIASGSLD  171 (767)
Q Consensus       108 ~sVtsVaFSpDG~~LASgs-----------~DG-tVrVWDl~t--g~--~l~~L~gH~~~V~sLafsP~dg~lLaSgS~D  171 (767)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  |+  ....|...-.....++|.+ ++ ++++ ..+
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~-~~~   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVA-TPP   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEe-CCC
Confidence            3467788888888776642           223 677776432  33  2344443344568899988 66 5554 444


Q ss_pred             CeEEEEECCCC-----e--EEEe-ecC-----CCCeEEEEEcCCCCEEEEEE
Q 004217          172 HEVRLWNASTA-----E--CIGS-RDF-----YRPIASIAFHASGELLAVAS  210 (767)
Q Consensus       172 GtVrIWDl~tg-----~--~i~~-l~h-----~~~VtsVafSPdG~~LAsgS  210 (767)
                      ...++.|....     +  .+.. +..     ......++|.|||.+.++-+
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            33334454321     1  1211 222     23467899999998555433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.10  E-value=21  Score=41.15  Aligned_cols=175  Identities=14%  Similarity=0.144  Sum_probs=82.9

Q ss_pred             CCCEEEEEe-CCCeEEEEeCCCCCCC--------C---C----CCCeEEEEECCCCCeEEEEeC------CCeEEEEECC
Q 004217           80 ARRGLASWV-EAESLHHLRPKYCPLS--------P---P----PRSTIAAAFSPDGKTLASTHG------DHTVKIIDCQ  137 (767)
Q Consensus        80 ~g~~LaSgs-~DgsIrlWd~~t~~L~--------g---H----~~sVtsVaFSpDG~~LASgs~------DGtVrVWDl~  137 (767)
                      .+++|+..+ ....|.+.|..+....        .   +    -..-..+..-|+|+.++|+-.      -|-+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            455665554 7888999999864211        0   0    011233444568988888633      2568888988


Q ss_pred             CCeEEEEEccCC---CCcEEEEEccCCCcEEEEEeC--------------------CCeEEEEECCCCeEEEeecCC---
Q 004217          138 TGSCLKVLHGHR---RTPWVVRFHPLNPTIIASGSL--------------------DHEVRLWNASTAECIGSRDFY---  191 (767)
Q Consensus       138 tg~~l~~L~gH~---~~V~sLafsP~dg~lLaSgS~--------------------DGtVrIWDl~tg~~i~~l~h~---  191 (767)
                      +.+.........   ..-+.+-|.| ..+.++|...                    ..++.+||+.+.+.++++...   
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g  244 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG  244 (461)
T ss_dssp             T--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred             cccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence            887777665432   2346788899 8888888652                    368999999999999997644   


Q ss_pred             CCeEEEEEc--CCCCEEEEEE--CCcEEEEEc-CCCcccc-CCeEEe----------c-------CCCCeEEEEEccCCC
Q 004217          192 RPIASIAFH--ASGELLAVAS--GHKLYIWRY-NMREETS-SPRIVL----------R-------TRRSLRAVHFHPHAA  248 (767)
Q Consensus       192 ~~VtsVafS--PdG~~LAsgS--dd~V~VWDl-~t~~~~~-~~~~l~----------~-------h~~~VtsVaFSPDG~  248 (767)
                      .....|.|.  |+..+=++++  ...|..|-- ..++-.. +...+.          .       -..-|+.|..|.|.+
T Consensus       245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr  324 (461)
T PF05694_consen  245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR  324 (461)
T ss_dssp             EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred             CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence            234566664  5555544544  344554433 3322100 000000          0       024579999999999


Q ss_pred             eEEEEEe
Q 004217          249 PLLLTAE  255 (767)
Q Consensus       249 ~LlaSgs  255 (767)
                      +|.+++-
T Consensus       325 fLYvs~W  331 (461)
T PF05694_consen  325 FLYVSNW  331 (461)
T ss_dssp             EEEEEET
T ss_pred             EEEEEcc
Confidence            9888763

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=92.08  E-value=0.81  Score=47.92  Aligned_cols=105  Identities=10%  Similarity=0.035  Sum_probs=66.7

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEE-EEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIA-AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVts-VaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH  148 (767)
                      +........++.|..++.|.+|+....     ....-...|.+ |.--.++.+..+++.|+.|+.|++.-++.+.....|
T Consensus        64 ~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h  143 (238)
T KOG2444|consen   64 QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQH  143 (238)
T ss_pred             eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccc
Confidence            444457788999999999999998621     11112222333 222336668889999999999999988877777667


Q ss_pred             C-CCcEEEEEccCCCcEEEEE--eCCCeEEEEECC
Q 004217          149 R-RTPWVVRFHPLNPTIIASG--SLDHEVRLWNAS  180 (767)
Q Consensus       149 ~-~~V~sLafsP~dg~lLaSg--S~DGtVrIWDl~  180 (767)
                      + ..+....... .+.++.+.  |.|..++.|++.
T Consensus       144 ~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  144 NFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cCCCcceeEEec-CCceEEeeccccchhhhhcchh
Confidence            6 3333333333 34455554  555666666554

>PRK13684 Ycf48-like protein; Provisional

Probab=91.94  E-value=21  Score=39.56  Aligned_cols=141  Identities=13%  Similarity=0.096  Sum_probs=80.4

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCCeEEE-EECCCCeEEEEE-ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE
Q 004217          107 PRSTIAAAFSPDGKTLASTHGDHTVKI-IDCQTGSCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC  184 (767)
Q Consensus       107 ~~sVtsVaFSpDG~~LASgs~DGtVrV-WDl~tg~~l~~L-~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~  184 (767)
                      ...+.++.+.+++.+++++. .|.+.. +| ..++....+ ..-...++.+.+.+ ++..++.+ ..|.+++=....+..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCc
Confidence            45789999999987776554 455443 22 223322222 33446788999999 77766654 567665323344443


Q ss_pred             EEeec-----CCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217          185 IGSRD-----FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       185 i~~l~-----h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla  252 (767)
                      .....     ....+..+.|.++++.++++.++.|. ...+.++..........-....+.+.|..+++.+++
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL  319 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE
Confidence            33221     22457889999998877777655443 444444432211110122346788888877775444

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.92  E-value=1.4  Score=50.98  Aligned_cols=135  Identities=18%  Similarity=0.136  Sum_probs=90.0

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCC--eE-----EEEeCCCeEEEEECCCC-e-EEEEEccC
Q 004217           82 RGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGK--TL-----ASTHGDHTVKIIDCQTG-S-CLKVLHGH  148 (767)
Q Consensus        82 ~~LaSgs~DgsIrlWd~~t~~L~----gH~~sVtsVaFSpDG~--~L-----ASgs~DGtVrVWDl~tg-~-~l~~L~gH  148 (767)
                      -.+.++.+...++..|++.+++.    -|.. |.-+.+.||.+  .|     +.|-.|..|.-||.+-. + .+..-++|
T Consensus       347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k  425 (644)
T KOG2395|consen  347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK  425 (644)
T ss_pred             eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence            34455666666777777777432    2333 88888888654  22     44666888999998632 2 22222333


Q ss_pred             C----CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-e-cCCCCeEEEEEcCCCCEEEEEECCcEEEEEcC
Q 004217          149 R----RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-R-DFYRPIASIAFHASGELLAVASGHKLYIWRYN  220 (767)
Q Consensus       149 ~----~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l-~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~  220 (767)
                      .    ....|.+-  +...+++.||.+|.||+||- .+..-++ + +...+|..|..+.+|++|+..++..+.+.|+.
T Consensus       426 qy~~k~nFsc~aT--T~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  426 QYSTKNNFSCFAT--TESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             ccccccccceeee--cCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence            2    22334433  35678999999999999997 4443333 3 36789999999999999998888877777765

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=91.62  E-value=0.56  Score=56.54  Aligned_cols=90  Identities=13%  Similarity=0.130  Sum_probs=70.4

Q ss_pred             CCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEE
Q 004217           89 EAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (767)
Q Consensus        89 ~DgsIrlWd~~t~~L~---gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lL  165 (767)
                      ..|+|.|+-- +++-.   ..+-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|+..|..+.|++ ++..+
T Consensus        39 r~GSVtIfad-tGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l  116 (1416)
T KOG3617|consen   39 RGGSVTIFAD-TGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH-DGTVL  116 (1416)
T ss_pred             CCceEEEEec-CCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC-CCCeE
Confidence            3456666643 22211   1122356799999988999999999999999887765555577999999999999 99999


Q ss_pred             EEEeCCCeEEEEECC
Q 004217          166 ASGSLDHEVRLWNAS  180 (767)
Q Consensus       166 aSgS~DGtVrIWDl~  180 (767)
                      +++..-|.|.+|...
T Consensus       117 ~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  117 MTLDNPGSVHLWRYD  131 (1416)
T ss_pred             EEcCCCceeEEEEee
Confidence            999999999999776

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=91.49  E-value=3.2  Score=46.94  Aligned_cols=173  Identities=15%  Similarity=0.099  Sum_probs=93.5

Q ss_pred             cCC-CEEEEEeCCCe--EEEEeCCCC---CCCCCC-CCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCC
Q 004217           79 DAR-RGLASWVEAES--LHHLRPKYC---PLSPPP-RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (767)
Q Consensus        79 d~g-~~LaSgs~Dgs--IrlWd~~t~---~L~gH~-~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~  151 (767)
                      .+| +.|+.+..|+.  +.+.|+.++   +|.... .......++++.+.|+-...+..|+-.|+++.+....+......
T Consensus        45 ~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~  124 (386)
T PF14583_consen   45 DDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDW  124 (386)
T ss_dssp             TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTE
T ss_pred             CCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccc
Confidence            444 44444444554  566677766   455443 22335677888888877666678999999998876666666666


Q ss_pred             cEEEEEcc-CCCcEEEEEeC----------------------CCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCC-EEE
Q 004217          152 PWVVRFHP-LNPTIIASGSL----------------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGE-LLA  207 (767)
Q Consensus       152 V~sLafsP-~dg~lLaSgS~----------------------DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~-~LA  207 (767)
                      +-...|.. .++..++-.-.                      ...|.--|+.+|+....+.....+.-+.|+|... +|+
T Consensus       125 ~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~  204 (386)
T PF14583_consen  125 KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIM  204 (386)
T ss_dssp             EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEE
T ss_pred             ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEE
Confidence            65566642 24555443211                      1346666888988887788888889999999764 666


Q ss_pred             EEECC---c--EEEEEcCCCccccCCeEEecC--CCCeEEEEEccCCCeEEEE
Q 004217          208 VASGH---K--LYIWRYNMREETSSPRIVLRT--RRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       208 sgSdd---~--V~VWDl~t~~~~~~~~~l~~h--~~~VtsVaFSPDG~~LlaS  253 (767)
                      .|-.+   .  -+||-+++.....  ..+..+  ...+..=-|.|||..|..-
T Consensus       205 fCHEGpw~~Vd~RiW~i~~dg~~~--~~v~~~~~~e~~gHEfw~~DG~~i~y~  255 (386)
T PF14583_consen  205 FCHEGPWDLVDQRIWTINTDGSNV--KKVHRRMEGESVGHEFWVPDGSTIWYD  255 (386)
T ss_dssp             EEE-S-TTTSS-SEEEEETTS-----EESS---TTEEEEEEEE-TTSS-EEEE
T ss_pred             EeccCCcceeceEEEEEEcCCCcc--eeeecCCCCcccccccccCCCCEEEEE
Confidence            66533   2  3677665433211  111122  3345556688998876653

>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences

Probab=91.28  E-value=0.075  Score=51.54  Aligned_cols=67  Identities=19%  Similarity=0.142  Sum_probs=42.9

Q ss_pred             cccccccCCceeeeeccCCCCceeeeeccCCCCCCCCCCCCCCccccccccccCCcccccccccccc
Q 004217          332 TQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLD  398 (767)
Q Consensus       332 ~~~~~~ss~~~~l~~~~~~~~q~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (767)
                      ....+|.+++..+++||.+++-....-....-.++|++.++.++.++++++.+..+++++..||...
T Consensus         3 ~~~~lD~s~g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~s~~~~~G~~~lPK~~   69 (136)
T PF08954_consen    3 ATQELDTSSGVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYRSPEPQKGFAFLPKRA   69 (136)
T ss_dssp             EEEE----SS-EEEEE-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE--SS--SEEEE--GGG
T ss_pred             eEEeccCCCceeEeeEcCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccccCCCeEeeEecCccc
Confidence            4567899999999999998866555555544559999999999999999999999999999988766

It has no known function []. ; PDB: 2B4E_A 2AQ5_A.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.97  E-value=3.8  Score=47.47  Aligned_cols=134  Identities=12%  Similarity=0.148  Sum_probs=86.6

Q ss_pred             CCCCCeEEE-EeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccC-------CCcEEEEEeCCCeEEEEECCC-CeEEE
Q 004217          116 SPDGKTLAS-THGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL-------NPTIIASGSLDHEVRLWNAST-AECIG  186 (767)
Q Consensus       116 SpDG~~LAS-gs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~-------dg~lLaSgS~DGtVrIWDl~t-g~~i~  186 (767)
                      ..|..+|+. |.....++-.|++.|+.+..+.-|...  -+.|.|.       +...|+ |-.|..|.-.|.+- |..+.
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCcee
Confidence            345555544 444567888899999999999877665  5788883       123344 44555565556653 43344


Q ss_pred             eecCCCCeEEEEEcCC----CCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          187 SRDFYRPIASIAFHAS----GELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       187 ~l~h~~~VtsVafSPd----G~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .......++.-.|+.-    .-++|+++..+ |++||--....   ...+.+....|..|..+.+|++++++|.
T Consensus       553 v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rA---KtalP~lG~aIk~idvta~Gk~ilaTCk  623 (776)
T COG5167         553 VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRA---KTALPGLGDAIKHIDVTANGKHILATCK  623 (776)
T ss_pred             eeeehhccccccccccccccCceEEEecCCCceeeehhhcchh---hhcCcccccceeeeEeecCCcEEEEeec
Confidence            3333333333334332    23888888666 99999543322   2245566788999999999999999998

>PRK10115 protease 2; Provisional

Probab=90.84  E-value=41  Score=41.20  Aligned_cols=194  Identities=13%  Similarity=-0.009  Sum_probs=97.8

Q ss_pred             eeecccccceec-CCcceEEEEEEcCCCEEEEE-----eCCCeEEEEeCCCCCC--CCCCCCeEEEEECCCCCeEEEEeC
Q 004217           56 KRLLGETARKCS-GSFSQIFEAGRDARRGLASW-----VEAESLHHLRPKYCPL--SPPPRSTIAAAFSPDGKTLASTHG  127 (767)
Q Consensus        56 k~~wd~~~~~~~-~s~s~~~vA~sd~g~~LaSg-----s~DgsIrlWd~~t~~L--~gH~~sVtsVaFSpDG~~LASgs~  127 (767)
                      +.++|.+...-. .......+..+.+++.|+-+     ++...|++.|+.++..  ......-..++|++|++.|+....
T Consensus       112 ~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~  191 (686)
T PRK10115        112 ETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRK  191 (686)
T ss_pred             EEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEe
Confidence            445554433211 22223344556677766643     2333478888877751  222222256999999987766644


Q ss_pred             C------CeEEEEECCCC--eEEEEEccCCCCcEEEEEccCCCcEEEEEeC---CCeEEEEECC--CCeEEEeecCCCC-
Q 004217          128 D------HTVKIIDCQTG--SCLKVLHGHRRTPWVVRFHPLNPTIIASGSL---DHEVRLWNAS--TAECIGSRDFYRP-  193 (767)
Q Consensus       128 D------GtVrVWDl~tg--~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~---DGtVrIWDl~--tg~~i~~l~h~~~-  193 (767)
                      +      ..|+.+++.++  +-...+...........+.+.++++++..+.   ++.+.+|+..  +++....+..... 
T Consensus       192 ~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  271 (686)
T PRK10115        192 HPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDH  271 (686)
T ss_pred             cCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCC
Confidence            2      36888899887  3334444333333323344435665444332   4578898853  3443333332222 


Q ss_pred             eEEEEEcCCCCEEEEEECC--c--EEEEEcCCCccccCCeEEecC-C-CCeEEEEEccCCCeEEEEEe
Q 004217          194 IASIAFHASGELLAVASGH--K--LYIWRYNMREETSSPRIVLRT-R-RSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       194 VtsVafSPdG~~LAsgSdd--~--V~VWDl~t~~~~~~~~~l~~h-~-~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ...+. +..+.+++....+  .  |...++....   ....+..+ . ..|..+.+.  +++|+++..
T Consensus       272 ~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~---~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~  333 (686)
T PRK10115        272 EYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQ---QWEELIPPRENIMLEGFTLF--TDWLVVEER  333 (686)
T ss_pred             EEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcc---cCeEEECCCCCCEEEEEEEE--CCEEEEEEE
Confidence            22222 3333333333322  2  4444544221   12345555 2 367778877  445665543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=90.77  E-value=0.72  Score=36.59  Aligned_cols=34  Identities=15%  Similarity=0.137  Sum_probs=29.8

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE
Q 004217          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC  141 (767)
Q Consensus       107 ~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~  141 (767)
                      ...|.+++|+|...+||.+..||.|.|+.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            446999999999999999999999999998 4543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=90.13  E-value=9.3  Score=42.77  Aligned_cols=101  Identities=10%  Similarity=0.079  Sum_probs=56.9

Q ss_pred             CCeEEEEECCCCCeEEEEeCCCeEEEEECCC-----CeE--E-EEEcc----CCCCcEEEEEccCCCcEEEEEeCC----
Q 004217          108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-----GSC--L-KVLHG----HRRTPWVVRFHPLNPTIIASGSLD----  171 (767)
Q Consensus       108 ~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t-----g~~--l-~~L~g----H~~~V~sLafsP~dg~lLaSgS~D----  171 (767)
                      .....++|.++| +++ +..+...++.|...     ++.  + ..+..    +......+.|.| ++.+.++-+..    
T Consensus        72 ~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~  148 (367)
T TIGR02604        72 SMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASK  148 (367)
T ss_pred             CCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCce
Confidence            346889999988 444 44444334445432     121  1 22322    134477899999 88877765521    


Q ss_pred             ---------------CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC
Q 004217          172 ---------------HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG  211 (767)
Q Consensus       172 ---------------GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd  211 (767)
                                     +.|.-+|..+++.......-.....++|+++|+++++-.+
T Consensus       149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       149 VTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             eccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccC
Confidence                           3455555555443322222234567999999988766543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK10115 protease 2; Provisional

Probab=89.81  E-value=17  Score=44.42  Aligned_cols=110  Identities=10%  Similarity=0.049  Sum_probs=66.7

Q ss_pred             CCeEEEEECCCCCeEEEEeC-----CCeEEEEECCCCeEEE-EEccCCCCcEEEEEccCCCcEE-EEEeCC-----CeEE
Q 004217          108 RSTIAAAFSPDGKTLASTHG-----DHTVKIIDCQTGSCLK-VLHGHRRTPWVVRFHPLNPTII-ASGSLD-----HEVR  175 (767)
Q Consensus       108 ~sVtsVaFSpDG~~LASgs~-----DGtVrVWDl~tg~~l~-~L~gH~~~V~sLafsP~dg~lL-aSgS~D-----GtVr  175 (767)
                      -.+..+.|||||++|+.+..     ...|++.|+.+|+.+. .+.+ ..  ..++|.+ +++.| ++...+     ..|.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~  202 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVW  202 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cc--eEEEEee-CCCEEEEEEecCCCCCCCEEE
Confidence            45778899999999887643     2468999999886432 2222 11  4699999 55544 443322     3688


Q ss_pred             EEECCCC--eEEEeecC-CCCeE-EEEEcCCCCEEEEEEC----CcEEEEEcCC
Q 004217          176 LWNASTA--ECIGSRDF-YRPIA-SIAFHASGELLAVASG----HKLYIWRYNM  221 (767)
Q Consensus       176 IWDl~tg--~~i~~l~h-~~~Vt-sVafSPdG~~LAsgSd----d~V~VWDl~t  221 (767)
                      .+++.++  +-...+.. ..... .+..+.++++++..+.    ..+.+|+...
T Consensus       203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~  256 (686)
T PRK10115        203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL  256 (686)
T ss_pred             EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence            8898887  33333332 22233 3333448887665542    2388988543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=89.70  E-value=24  Score=40.36  Aligned_cols=169  Identities=11%  Similarity=0.051  Sum_probs=84.1

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC---C-------CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEE-CCCCe
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP---L-------SPPPRSTIAAAFSPDGKTLASTHGDHTVKIID-CQTGS  140 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~---L-------~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWD-l~tg~  140 (767)
                      .+.+.+ .....|+...+||.++++|.....   +       .-....+....+..+|-.+.+  .++.+.+.+ .....
T Consensus        83 iv~~~w-t~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~  159 (410)
T PF04841_consen   83 IVGMGW-TDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPV  159 (410)
T ss_pred             EEEEEE-CCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccc
Confidence            344444 346778888899999999985222   0       011122233344445533333  344444432 22111


Q ss_pred             EEEEEccCCCCcEE----------EEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE
Q 004217          141 CLKVLHGHRRTPWV----------VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS  210 (767)
Q Consensus       141 ~l~~L~gH~~~V~s----------LafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS  210 (767)
                      ..+.+..-......          ..++. +....+....++.+.+-+-...+.   +...+++..++.||+|++||.-.
T Consensus       160 ~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t  235 (410)
T PF04841_consen  160 KLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFT  235 (410)
T ss_pred             hhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEE
Confidence            11111110000000          12333 333333344444455333222111   33346899999999999999888


Q ss_pred             CCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCe
Q 004217          211 GHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAP  249 (767)
Q Consensus       211 dd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~  249 (767)
                      +++ +.+...+-.+...  .....-......+.|.-+...
T Consensus       236 ~~g~l~v~ssDf~~~~~--e~~~~~~~~p~~~~WCG~dav  273 (410)
T PF04841_consen  236 DSGNLWVVSSDFSEKLC--EFDTDSKSPPKQMAWCGNDAV  273 (410)
T ss_pred             CCCCEEEEECcccceeE--EeecCcCCCCcEEEEECCCcE
Confidence            655 8888765544322  111222456678889877653

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.60  E-value=1  Score=55.71  Aligned_cols=100  Identities=13%  Similarity=0.161  Sum_probs=70.1

Q ss_pred             CCCeEEEEeCCCeEEEEECCCC-eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCe-
Q 004217          118 DGKTLASTHGDHTVKIIDCQTG-SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPI-  194 (767)
Q Consensus       118 DG~~LASgs~DGtVrVWDl~tg-~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~V-  194 (767)
                      .+..++.|+..|.|...|.... .....=..-.++|++++|+. ++.+++.|-.+|-|.+||+..++..+.+. +..+. 
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence            4567888988899999887643 11111123457899999999 99999999999999999999998888754 44333 


Q ss_pred             --EEEEEcCCCCEEEEEECCcEEEEEc
Q 004217          195 --ASIAFHASGELLAVASGHKLYIWRY  219 (767)
Q Consensus       195 --tsVafSPdG~~LAsgSdd~V~VWDl  219 (767)
                        -.+.+..++..+.++..++. +|.+
T Consensus       177 ~vi~v~~t~~nS~llt~D~~Gs-f~~l  202 (1206)
T KOG2079|consen  177 GVIFVGRTSQNSKLLTSDTGGS-FWKL  202 (1206)
T ss_pred             eEEEEEEeCCCcEEEEccCCCc-eEEE
Confidence              33445555565666654442 5554

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=89.57  E-value=8  Score=45.08  Aligned_cols=105  Identities=12%  Similarity=0.109  Sum_probs=65.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC----CCCC------CeE--EEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217           81 RRGLASWVEAESLHHLRPKYCPLS----PPPR------STI--AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t~~L~----gH~~------sVt--sVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH  148 (767)
                      +..++.++.++.+.-.|..++++.    ....      .+.  .+... ++..++.++.|+.|.-+|.++|+.+..+...
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            445666777888888888877422    1111      010  11111 2267778888999999999999998877543


Q ss_pred             CCC-----c-EEEEEccCCCcEEEEEe---------CCCeEEEEECCCCeEEEeec
Q 004217          149 RRT-----P-WVVRFHPLNPTIIASGS---------LDHEVRLWNASTAECIGSRD  189 (767)
Q Consensus       149 ~~~-----V-~sLafsP~dg~lLaSgS---------~DGtVrIWDl~tg~~i~~l~  189 (767)
                      ...     + ....+.  + .+++.++         .++.|..+|..+|+.+..+.
T Consensus       140 ~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~  192 (488)
T cd00216         140 DQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY  192 (488)
T ss_pred             CCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence            221     1 112222  2 3444443         36889999999999888754

The alignment model contains an 8-bladed beta-propeller.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.38  E-value=4.5  Score=43.92  Aligned_cols=154  Identities=15%  Similarity=0.163  Sum_probs=93.0

Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEeCC-----CeEEEEECCCC-eEEEEEccCCCCcEEEEEccCCCcEEEEEeC-----
Q 004217          102 PLSPPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTG-SCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-----  170 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG~~LASgs~D-----GtVrVWDl~tg-~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~-----  170 (767)
                      -+.+|.      .||+||.+|...-+|     |.|-|||.+.+ ..+..+..|.-....+.|.+ |++.++.+..     
T Consensus       114 HfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~-DGrtlvvanGGIeth  186 (366)
T COG3490         114 HFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVANGGIETH  186 (366)
T ss_pred             eeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec-CCcEEEEeCCceecc
Confidence            355664      599999999876554     78999998754 45667888887888899999 8888777532     


Q ss_pred             -------------CCeEEEEECCCCeEEEeec-----CCCCeEEEEEcCCCCEEEEEEC-----Cc-EEEEEcCCCcccc
Q 004217          171 -------------DHEVRLWNASTAECIGSRD-----FYRPIASIAFHASGELLAVASG-----HK-LYIWRYNMREETS  226 (767)
Q Consensus       171 -------------DGtVrIWDl~tg~~i~~l~-----h~~~VtsVafSPdG~~LAsgSd-----d~-V~VWDl~t~~~~~  226 (767)
                                   .-++.+.|..+|+.+.+..     +.-.|..++..+||+.++.+-.     +. ..+=-...++.+.
T Consensus       187 pdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~  266 (366)
T COG3490         187 PDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLE  266 (366)
T ss_pred             cccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCc
Confidence                         1134455555666554422     3456888899999987766541     21 1111122222222


Q ss_pred             CC----eEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCC
Q 004217          227 SP----RIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSS  262 (767)
Q Consensus       227 ~~----~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~  262 (767)
                      ..    .........|-+|+.+-+..+++.|+-      +||..++
T Consensus       267 ~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG  312 (366)
T COG3490         267 FLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATG  312 (366)
T ss_pred             ccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCC
Confidence            00    001112346777888766665555542      6666543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=89.16  E-value=9.3  Score=43.57  Aligned_cols=141  Identities=13%  Similarity=0.073  Sum_probs=77.8

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCCCCCC--CeEEEEECCCCCeEEEEeCCCeEEEEECCC--------C-e
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPR--STIAAAFSPDGKTLASTHGDHTVKIIDCQT--------G-S  140 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~gH~~--sVtsVaFSpDG~~LASgs~DGtVrVWDl~t--------g-~  140 (767)
                      ...+.+......|+.+.+.|.|-+|.....+..++..  .-....|.+-      ...++.-.|-|+..        | .
T Consensus         4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~gf~   77 (395)
T PF08596_consen    4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKEGFL   77 (395)
T ss_dssp             EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--------GGGSS-SEEE-GGG--TT-SEEEE
T ss_pred             EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccc------cccCCCcceEEehhhCCcccccccC
Confidence            4556667788888888888888888876654333111  1111222110      11122333344432        1 2


Q ss_pred             EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec---------CCCCeEEEEEcC-----CC---
Q 004217          141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---------FYRPIASIAFHA-----SG---  203 (767)
Q Consensus       141 ~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~---------h~~~VtsVafSP-----dG---  203 (767)
                      +...+....+.|++++.+  |-.+++.|..+|.+.|.|+|....+..-.         ....++++.|..     |+   
T Consensus        78 P~~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS  155 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS  155 (395)
T ss_dssp             EEEEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred             chhheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence            334445568899999986  57899999999999999999888776621         234677888762     33   


Q ss_pred             CEEEEEECCc-EEEEEcC
Q 004217          204 ELLAVASGHK-LYIWRYN  220 (767)
Q Consensus       204 ~~LAsgSdd~-V~VWDl~  220 (767)
                      -.+++|.+.+ +.+|.+.
T Consensus       156 i~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  156 ICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEEEEETTSEEEEEEEE
T ss_pred             eEEEEEeCCCCEEEEEEe
Confidence            2677777655 8888764

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=89.10  E-value=0.98  Score=35.83  Aligned_cols=34  Identities=21%  Similarity=0.246  Sum_probs=29.7

Q ss_pred             CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE
Q 004217          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC  184 (767)
Q Consensus       149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~  184 (767)
                      ...|..++|+| ..++++.+..||.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence            45689999999 8999999999999999998 5543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=89.07  E-value=1.2  Score=46.80  Aligned_cols=104  Identities=14%  Similarity=0.144  Sum_probs=61.0

Q ss_pred             CCeEEEEeCCCeEEEEECCCC-eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CC-CCeE
Q 004217          119 GKTLASTHGDHTVKIIDCQTG-SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FY-RPIA  195 (767)
Q Consensus       119 G~~LASgs~DGtVrVWDl~tg-~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~-~~Vt  195 (767)
                      +..+++|+.||.|.+|+..-- .....+..-...|.++--.-.++.+..+++.|+.|+.|++.-.+.+.... |. .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            467889999999999987621 11111111122232222122245589999999999999999887776654 33 3444


Q ss_pred             EEEEcCCCCEEEEE--ECCc-EEEEEcCCC
Q 004217          196 SIAFHASGELLAVA--SGHK-LYIWRYNMR  222 (767)
Q Consensus       196 sVafSPdG~~LAsg--Sdd~-V~VWDl~t~  222 (767)
                      ....+..+++++.+  |.+. ++.|++...
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchhhh
Confidence            44444455555555  3333 666666543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=88.83  E-value=5.6  Score=45.61  Aligned_cols=147  Identities=15%  Similarity=0.139  Sum_probs=75.8

Q ss_pred             CeEEEEECCCCCeEEEEeC--------------------CCeEEEEECCCCeEEEEEccCC--CCcEEEEEc--cCCCcE
Q 004217          109 STIAAAFSPDGKTLASTHG--------------------DHTVKIIDCQTGSCLKVLHGHR--RTPWVVRFH--PLNPTI  164 (767)
Q Consensus       109 sVtsVaFSpDG~~LASgs~--------------------DGtVrVWDl~tg~~l~~L~gH~--~~V~sLafs--P~dg~l  164 (767)
                      --.++-|.|..+.++|...                    ..++.+||+.+.+.++++.--.  ..+..|+|.  |....-
T Consensus       182 ~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~g  261 (461)
T PF05694_consen  182 FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYG  261 (461)
T ss_dssp             ----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EE
T ss_pred             CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccce
Confidence            4567778887778877643                    3679999999999998885322  246677775  422334


Q ss_pred             EEEEeCCCeEEEEEC-CCCeEEEe----ecC------------------CCCeEEEEEcCCCCEEEEEEC--CcEEEEEc
Q 004217          165 IASGSLDHEVRLWNA-STAECIGS----RDF------------------YRPIASIAFHASGELLAVASG--HKLYIWRY  219 (767)
Q Consensus       165 LaSgS~DGtVrIWDl-~tg~~i~~----l~h------------------~~~VtsVafSPdG~~LAsgSd--d~V~VWDl  219 (767)
                      |+.+....+|..|-- ..++....    +..                  ..-|+.|..|.|.++|.++.-  +.|+-||+
T Consensus       262 Fvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDI  341 (461)
T PF05694_consen  262 FVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDI  341 (461)
T ss_dssp             EEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-
T ss_pred             EEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEec
Confidence            555555666666643 34432211    110                  234789999999999999983  44999999


Q ss_pred             CCCccccCC-eEEec---------------CCCCeEEEEEccCCCeEEEEEe
Q 004217          220 NMREETSSP-RIVLR---------------TRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       220 ~t~~~~~~~-~~l~~---------------h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ......+.. ....+               -.+...-|..|-||++|.+|.+
T Consensus       342 SDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  342 SDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             CCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            875532211 01111               1223478999999999999888

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=88.80  E-value=4.1  Score=43.33  Aligned_cols=102  Identities=14%  Similarity=0.105  Sum_probs=61.2

Q ss_pred             CcEEEEEccCCCcEEEEEe-CCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEE-cCCCccccC
Q 004217          151 TPWVVRFHPLNPTIIASGS-LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWR-YNMREETSS  227 (767)
Q Consensus       151 ~V~sLafsP~dg~lLaSgS-~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWD-l~t~~~~~~  227 (767)
                      .+...++++ +++.++... .++.-.+|-...+...........+....|+++|...++...+. .+++. ...++... 
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~-  102 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP-  102 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee-
Confidence            678899999 666655544 33333444444444333332445788889999988776665443 55553 33332211 


Q ss_pred             CeEEecC--CCCeEEEEEccCCCeEEEEEe
Q 004217          228 PRIVLRT--RRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       228 ~~~l~~h--~~~VtsVaFSPDG~~LlaSgs  255 (767)
                       ......  ...|.++.+||||..++....
T Consensus       103 -~~v~~~~~~~~I~~l~vSpDG~RvA~v~~  131 (253)
T PF10647_consen  103 -VEVDWPGLRGRITALRVSPDGTRVAVVVE  131 (253)
T ss_pred             -EEecccccCCceEEEEECCCCcEEEEEEe
Confidence             111111  128999999999999887653

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.40  E-value=28  Score=44.20  Aligned_cols=120  Identities=13%  Similarity=0.138  Sum_probs=79.0

Q ss_pred             eCCCeEEEEeCCCC---------CCCC------CCCCeEEEEECCCC-CeEEEEeCCCeEEEEECCCCeE-EEEEccCCC
Q 004217           88 VEAESLHHLRPKYC---------PLSP------PPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSC-LKVLHGHRR  150 (767)
Q Consensus        88 s~DgsIrlWd~~t~---------~L~g------H~~sVtsVaFSpDG-~~LASgs~DGtVrVWDl~tg~~-l~~L~gH~~  150 (767)
                      +++..|..+|++.-         .|..      ...-..++.|+|.- ...+.+..|+.|+|.-+..-.. ...+ .-+.
T Consensus       121 sng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~  199 (1405)
T KOG3630|consen  121 SNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTN  199 (1405)
T ss_pred             cCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-Cccc
Confidence            34456888888642         1222      23346788999843 3456677788888877653222 2222 2456


Q ss_pred             CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-----cCCCCeEEEEEcCCCCEEEEEE
Q 004217          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-----DFYRPIASIAFHASGELLAVAS  210 (767)
Q Consensus       151 ~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-----~h~~~VtsVafSPdG~~LAsgS  210 (767)
                      .+++++|+| .++.++.|-..|++.-|... .+....+     .....|.+|+|-....++++=+
T Consensus       200 ~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  200 SQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             ceeeEEecc-ccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence            689999999 89999999999999988653 3322222     2357899999988877776543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=88.36  E-value=21  Score=42.24  Aligned_cols=55  Identities=13%  Similarity=0.139  Sum_probs=36.2

Q ss_pred             CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCcccc
Q 004217          172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETS  226 (767)
Q Consensus       172 GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~  226 (767)
                      +.|.-+|+.+++.........+...-...-.|.+++.+. ++.++.+|.++++.+.
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw  496 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELW  496 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence            468888999998887765433321111122445666666 4459999999999876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=88.34  E-value=18  Score=42.88  Aligned_cols=73  Identities=14%  Similarity=0.071  Sum_probs=47.9

Q ss_pred             CeEEEEECCCCeEEEEEccCCCCcEE-EEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEE--EEEcCCCC
Q 004217          129 HTVKIIDCQTGSCLKVLHGHRRTPWV-VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIAS--IAFHASGE  204 (767)
Q Consensus       129 GtVrVWDl~tg~~l~~L~gH~~~V~s-LafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~Vts--VafSPdG~  204 (767)
                      +.|.-+|+.+|+.+..........-. +..   .+.+++.+..||.++.+|.++|+.+..+.....+..  +.|.-+|+
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t---~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~  516 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT---AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGK  516 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEE---CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCE
Confidence            45788888888877766532221112 222   345777888899999999999999988765443332  33344665

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=88.22  E-value=33  Score=38.36  Aligned_cols=146  Identities=19%  Similarity=0.173  Sum_probs=86.2

Q ss_pred             CCEEEEEeCCCeEEEEeCCC-CC--------CCCCCCCeE-EEEECCCCCeEEEEeCCCeEEEEECCCCeE--EEEEccC
Q 004217           81 RRGLASWVEAESLHHLRPKY-CP--------LSPPPRSTI-AAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVLHGH  148 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t-~~--------L~gH~~sVt-sVaFSpDG~~LASgs~DGtVrVWDl~tg~~--l~~L~gH  148 (767)
                      .+.+.+-+.||++....+.. ++        +..-.+++. .-+++.++..++--+.+|.|+--|+.....  ...+.--
T Consensus       147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~  226 (342)
T PF06433_consen  147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLL  226 (342)
T ss_dssp             TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred             CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccccc
Confidence            34566777777777666652 21        222222222 334455555566678889999888875532  2222110


Q ss_pred             ----------CCCcEEEEEccCCCcEEEEEe--CC-------CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCC-EEEE
Q 004217          149 ----------RRTPWVVRFHPLNPTIIASGS--LD-------HEVRLWNASTAECIGSRDFYRPIASIAFHASGE-LLAV  208 (767)
Q Consensus       149 ----------~~~V~sLafsP~dg~lLaSgS--~D-------GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~-~LAs  208 (767)
                                .+.-.-+++++..+++++.-.  .+       ..|.++|+.+++.+..+....++.+|..+.+.+ +|++
T Consensus       227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~  306 (342)
T PF06433_consen  227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYA  306 (342)
T ss_dssp             -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEE
T ss_pred             CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEE
Confidence                      122334778873344433321  11       258888999999999988777888999999887 6655


Q ss_pred             EE-CC-cEEEEEcCCCcccc
Q 004217          209 AS-GH-KLYIWRYNMREETS  226 (767)
Q Consensus       209 gS-dd-~V~VWDl~t~~~~~  226 (767)
                      .+ .+ .|.+||..+++.+.
T Consensus       307 ~~~~~~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  307 LSAGDGTLDVYDAATGKLVR  326 (342)
T ss_dssp             EETTTTEEEEEETTT--EEE
T ss_pred             EcCCCCeEEEEeCcCCcEEe
Confidence            44 33 49999999998765

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=87.67  E-value=82  Score=39.09  Aligned_cols=149  Identities=16%  Similarity=0.174  Sum_probs=95.5

Q ss_pred             CCCCCeEEEEEC---C--C--CCeEEEEeCCCeEEEEE------CCC---------CeEEEEEcc---CCCCcEEEEEcc
Q 004217          105 PPPRSTIAAAFS---P--D--GKTLASTHGDHTVKIID------CQT---------GSCLKVLHG---HRRTPWVVRFHP  159 (767)
Q Consensus       105 gH~~sVtsVaFS---p--D--G~~LASgs~DGtVrVWD------l~t---------g~~l~~L~g---H~~~V~sLafsP  159 (767)
                      .-..+|..|+|.   .  +  .++|++ -....+.|+.      +..         ..++..+..   -......++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            355689999998   2  2  235544 4445677776      111         123344431   123567899999


Q ss_pred             CCCcEEEEEeCCCeEEEEECCCCe------EEEeecC----------CCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCc
Q 004217          160 LNPTIIASGSLDHEVRLWNASTAE------CIGSRDF----------YRPIASIAFHASGELLAVASGHKLYIWRYNMRE  223 (767)
Q Consensus       160 ~dg~lLaSgS~DGtVrIWDl~tg~------~i~~l~h----------~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~  223 (767)
                      .+...||.....|...|||+....      .......          .+....+.|.++-..|++++...+.++|+++..
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~  235 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNW  235 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCC
Confidence            888999999999999999992111      1111111          123347889988889999988889999999876


Q ss_pred             cccCCeEEecCCCCeEEEEEccC--CCeEEEEEe
Q 004217          224 ETSSPRIVLRTRRSLRAVHFHPH--AAPLLLTAE  255 (767)
Q Consensus       224 ~~~~~~~l~~h~~~VtsVaFSPD--G~~LlaSgs  255 (767)
                      .... .........|..+.-+|+  +..++.|..
T Consensus       236 ~~~~-l~~~~~~~~IlDv~~~~~~~~~~FiLTs~  268 (765)
T PF10214_consen  236 QTEY-LVTAKTWSWILDVKRSPDNPSHVFILTSK  268 (765)
T ss_pred             ccch-hccCCChhheeeEEecCCccceEEEEecC
Confidence            5321 223345578999999988  444444444

These proteins are found in fungi.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=86.78  E-value=3.8  Score=46.94  Aligned_cols=85  Identities=15%  Similarity=0.243  Sum_probs=59.6

Q ss_pred             CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEE-EEEccCCCc-----------------EE
Q 004217          104 SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV-VRFHPLNPT-----------------II  165 (767)
Q Consensus       104 ~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~s-LafsP~dg~-----------------lL  165 (767)
                      ....+.+.++..+|++++.|+...=|.|.|+|+.++..++.+||.++.=.. +.......+                 ++
T Consensus       304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv  383 (415)
T PF14655_consen  304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV  383 (415)
T ss_pred             ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence            345667899999999998888877799999999999999999987764221 111110111                 23


Q ss_pred             EEEeCCCeEEEEECCCCeEEEee
Q 004217          166 ASGSLDHEVRLWNASTAECIGSR  188 (767)
Q Consensus       166 aSgS~DGtVrIWDl~tg~~i~~l  188 (767)
                      +-.-.-|.|.||+++.|..+..+
T Consensus       384 IyaprRg~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  384 IYAPRRGILEVWSMRQGPRVAAF  406 (415)
T ss_pred             EEeccCCeEEEEecCCCCEEEEE
Confidence            33556677888888877766554

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=86.51  E-value=7.2  Score=42.52  Aligned_cols=125  Identities=14%  Similarity=0.105  Sum_probs=76.9

Q ss_pred             CeEEEEeCCCC-----CC-----CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe-EEEEEc-cCCCCcEEEEEc
Q 004217           91 ESLHHLRPKYC-----PL-----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLH-GHRRTPWVVRFH  158 (767)
Q Consensus        91 gsIrlWd~~t~-----~L-----~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~-~l~~L~-gH~~~V~sLafs  158 (767)
                      |.|.++++...     ++     ....++|++++-- +++ |+.+. ++.|.+|++...+ ....-. ...-.+.++...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~  138 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF  138 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence            67777777662     21     1456789998877 444 54444 3689999998777 433222 122356666654


Q ss_pred             cCCCcEEEEEeCCCeEEEEECCC-CeEEEee---cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCC
Q 004217          159 PLNPTIIASGSLDHEVRLWNAST-AECIGSR---DFYRPIASIAFHASGELLAVASGHK-LYIWRYNM  221 (767)
Q Consensus       159 P~dg~lLaSgS~DGtVrIWDl~t-g~~i~~l---~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t  221 (767)
                         +++++.|.....+.++.++. ...+..+   .....++++.|-++++.++++..++ |.++....
T Consensus       139 ---~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  139 ---KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             ---TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             ---ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence               46899998888888875443 2322222   2455688888987777777777555 88887763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=86.28  E-value=31  Score=39.48  Aligned_cols=128  Identities=16%  Similarity=0.159  Sum_probs=74.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC-CCCcEEEEEc
Q 004217           80 ARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH-RRTPWVVRFH  158 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH-~~~V~sLafs  158 (767)
                      +....+....++.+.+.+.....-....+++..+++||+|++||.-..+|.+.|.+.+-.+.+..+... ......+.|+
T Consensus       189 ~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC  268 (410)
T PF04841_consen  189 DRVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC  268 (410)
T ss_pred             CcceEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEE
Confidence            344444455566666444332211223468999999999999999999999999987655555555433 3566788887


Q ss_pred             cCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCc
Q 004217          159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE  223 (767)
Q Consensus       159 P~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~  223 (767)
                      - +...++.-  ...|.+....          ...   +.|.-++..++..--|+|+|..-...+
T Consensus       269 G-~dav~l~~--~~~l~lvg~~----------~~~---~~~~~~~~~~l~~E~DG~riit~~~~~  317 (410)
T PF04841_consen  269 G-NDAVVLSW--EDELLLVGPD----------GDS---ISFWYDGPVILVSEIDGVRIITSTSHE  317 (410)
T ss_pred             C-CCcEEEEe--CCEEEEECCC----------CCc---eEEeccCceEEeccCCceEEEeCCceE
Confidence            6 32222221  2334433311          111   344444554555556778888544443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=86.23  E-value=15  Score=41.94  Aligned_cols=182  Identities=12%  Similarity=0.022  Sum_probs=94.4

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC------CC------CCCCCeEEEEECC-----CC---CeEEEEeCCCeE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP------LS------PPPRSTIAAAFSP-----DG---KTLASTHGDHTV  131 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~------L~------gH~~sVtsVaFSp-----DG---~~LASgs~DGtV  131 (767)
                      ..+++. .+-++++.+.++|.+.+.|.....      +.      .....|+++.|+-     |+   -.|++|...|.+
T Consensus        89 vtal~~-S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v  167 (395)
T PF08596_consen   89 VTALKN-SDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNV  167 (395)
T ss_dssp             EEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEE
T ss_pred             EeEEec-CCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCE
Confidence            333444 577889999999999999996541      11      2345688899873     33   368899999999


Q ss_pred             EEEECC--C-CeEE----EEEccCCCCcEEEE-EccCCC-------------------cEEEEEeCCCeEEEEECCCCeE
Q 004217          132 KIIDCQ--T-GSCL----KVLHGHRRTPWVVR-FHPLNP-------------------TIIASGSLDHEVRLWNASTAEC  184 (767)
Q Consensus       132 rVWDl~--t-g~~l----~~L~gH~~~V~sLa-fsP~dg-------------------~lLaSgS~DGtVrIWDl~tg~~  184 (767)
                      .+|.+.  . +...    .....+.+.|..|. |+.+++                   +-++....+..+|++...+.+.
T Consensus       168 ~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~  247 (395)
T PF08596_consen  168 LTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKG  247 (395)
T ss_dssp             EEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---E
T ss_pred             EEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcc
Confidence            999874  1 2222    22234667776665 432111                   1234444577899999998877


Q ss_pred             EEeecCC-CCeEEEEEc-----CCCCEEEEEEC-CcEEEEEcCCCccccCCeEE-ecCCCCeEEEEEccCCCeEEEEE
Q 004217          185 IGSRDFY-RPIASIAFH-----ASGELLAVASG-HKLYIWRYNMREETSSPRIV-LRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       185 i~~l~h~-~~VtsVafS-----PdG~~LAsgSd-d~V~VWDl~t~~~~~~~~~l-~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      ..+.... .....+.+-     ..+..|++-.. +.|+++.+..-+++...... ......+....|+++|+.++.++
T Consensus       248 ~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g  325 (395)
T PF08596_consen  248 AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG  325 (395)
T ss_dssp             EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred             cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeC
Confidence            6664322 233344452     23445555554 45999999887765511111 01123455677899999665554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=85.64  E-value=53  Score=38.30  Aligned_cols=52  Identities=15%  Similarity=0.282  Sum_probs=35.8

Q ss_pred             CCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE--EEEE----c-cCCCCcEEEEEcc
Q 004217          108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVL----H-GHRRTPWVVRFHP  159 (767)
Q Consensus       108 ~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~--l~~L----~-gH~~~V~sLafsP  159 (767)
                      ..-+.|+|.|||++|++--..|.|++++-.++..  +..+    . .-.+....|+|+|
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P   88 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP   88 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence            3467899999998777655469999998655432  2111    1 1246688999998

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=85.44  E-value=23  Score=37.80  Aligned_cols=143  Identities=10%  Similarity=0.038  Sum_probs=83.5

Q ss_pred             CCCeEEEEECCCCCeEEEEeCC---------CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEE
Q 004217          107 PRSTIAAAFSPDGKTLASTHGD---------HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLW  177 (767)
Q Consensus       107 ~~sVtsVaFSpDG~~LASgs~D---------GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIW  177 (767)
                      +...++-..+|+|++++-.-.|         |.++.|-..  ..+..+...-.--..++|+.+...+.+.-+.+-+|.-|
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            4456777889999984322112         334444321  11222222333446788987444556667788889888


Q ss_pred             E--CCCCeEE-----EeecC----CC-CeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEc
Q 004217          178 N--ASTAECI-----GSRDF----YR-PIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFH  244 (767)
Q Consensus       178 D--l~tg~~i-----~~l~h----~~-~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFS  244 (767)
                      |  ..+|...     ..+..    .. ..-.++.+-+|.+.++.-. ++|...|..+++.+.   .+.-....|++++|-
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~---eiklPt~qitsccFg  262 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILL---EIKLPTPQITSCCFG  262 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEE---EEEcCCCceEEEEec
Confidence            8  5555432     22221    11 1223555667876666554 459999999999765   444457889999997


Q ss_pred             cC-CCeEEEEE
Q 004217          245 PH-AAPLLLTA  254 (767)
Q Consensus       245 PD-G~~LlaSg  254 (767)
                      -. -..+.+++
T Consensus       263 Gkn~d~~yvT~  273 (310)
T KOG4499|consen  263 GKNLDILYVTT  273 (310)
T ss_pred             CCCccEEEEEe
Confidence            44 23344443

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=85.35  E-value=44  Score=35.06  Aligned_cols=135  Identities=14%  Similarity=0.189  Sum_probs=84.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCC--CCC---CCCCCeEEEEECCCCCeEEEEeCC------CeEEEE---ECC--CCeEEE-E
Q 004217           82 RGLASWVEAESLHHLRPKYC--PLS---PPPRSTIAAAFSPDGKTLASTHGD------HTVKII---DCQ--TGSCLK-V  144 (767)
Q Consensus        82 ~~LaSgs~DgsIrlWd~~t~--~L~---gH~~sVtsVaFSpDG~~LASgs~D------GtVrVW---Dl~--tg~~l~-~  144 (767)
                      +.|+.+.....|.+|++...  ++.   .--+.|..+.++..|++|++-=.+      ..+|+|   +..  ...++. .
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR  108 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR  108 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence            66656577888999998733  211   233789999999999999985321      256775   222  111111 2


Q ss_pred             EccC---------------------CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE-E---Eeec-------C--
Q 004217          145 LHGH---------------------RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-I---GSRD-------F--  190 (767)
Q Consensus       145 L~gH---------------------~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~-i---~~l~-------h--  190 (767)
                      +-||                     ...+.+++..|..|++++.+  ++++.||.+..... .   ..++       +  
T Consensus       109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~  186 (215)
T PF14761_consen  109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID  186 (215)
T ss_pred             EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence            2222                     34678899999788877753  67899998765443 1   1111       1  


Q ss_pred             CCCeEEEEEcCCCCEEEEEECCcEEEEEcC
Q 004217          191 YRPIASIAFHASGELLAVASGHKLYIWRYN  220 (767)
Q Consensus       191 ~~~VtsVafSPdG~~LAsgSdd~V~VWDl~  220 (767)
                      .-....++|  .+.|+|..++..++++.+.
T Consensus       187 ~~~p~~v~i--c~~yiA~~s~~ev~Vlkl~  214 (215)
T PF14761_consen  187 NFKPTQVAI--CEGYIAVMSDLEVLVLKLE  214 (215)
T ss_pred             CceEEEEEE--EeeEEEEecCCEEEEEEEe
Confidence            112344555  3679999998888887653

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=85.13  E-value=5.1  Score=41.86  Aligned_cols=62  Identities=13%  Similarity=0.191  Sum_probs=47.7

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeEEEee---------------cCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCC
Q 004217          161 NPTIIASGSLDHEVRLWNASTAECIGSR---------------DFYRPIASIAFHASGELLAVASGHKLYIWRYNMR  222 (767)
Q Consensus       161 dg~lLaSgS~DGtVrIWDl~tg~~i~~l---------------~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~  222 (767)
                      ++++++....+|.+++||+.+++++..-               .....|..+.++.+|.-|++-+++..+.||..-+
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~   97 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG   97 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence            6788999999999999999998876542               1335677788888888777777777888876544

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=84.87  E-value=21  Score=38.09  Aligned_cols=92  Identities=16%  Similarity=0.143  Sum_probs=66.0

Q ss_pred             eEEEEECCCCCeEEE-EeCCCeEEEEE--CCCCe-----EEEEEcc----CCCCcEEEEEccCCCcEEEEEeCCCeEEEE
Q 004217          110 TIAAAFSPDGKTLAS-THGDHTVKIID--CQTGS-----CLKVLHG----HRRTPWVVRFHPLNPTIIASGSLDHEVRLW  177 (767)
Q Consensus       110 VtsVaFSpDG~~LAS-gs~DGtVrVWD--l~tg~-----~l~~L~g----H~~~V~sLafsP~dg~lLaSgS~DGtVrIW  177 (767)
                      -+.++|+.|.+.+.. -+.+-+|.-||  +.+|.     .+..++.    ..-....++..- ++++++++-..++|...
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKV  238 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEE
Confidence            357899988877654 46678888888  66653     2333332    112234455566 78999999999999999


Q ss_pred             ECCCCeEEEeec-CCCCeEEEEEcCC
Q 004217          178 NASTAECIGSRD-FYRPIASIAFHAS  202 (767)
Q Consensus       178 Dl~tg~~i~~l~-h~~~VtsVafSPd  202 (767)
                      |..+|+.+.++. ....|++++|--.
T Consensus       239 dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  239 DPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             CCCCCcEEEEEEcCCCceEEEEecCC
Confidence            999999999876 4678999999643

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=84.85  E-value=34  Score=39.17  Aligned_cols=139  Identities=12%  Similarity=0.033  Sum_probs=78.9

Q ss_pred             CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE-E-EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe---
Q 004217          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-K-VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE---  183 (767)
Q Consensus       109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l-~-~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~---  183 (767)
                      ....+..++||.+++.+..-...+-||-  |... . .-......+..+.|.+ ++.+++.+ .+|.+ +|....++   
T Consensus       240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l-~~S~d~G~~~~  314 (398)
T PLN00033        240 TFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGL-YVSKGTGLTEE  314 (398)
T ss_pred             ceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceE-EEecCCCCccc
Confidence            3455677788887777665433344542  3221 1 1123345688999988 77777655 55654 34444443   


Q ss_pred             --EEEeec---CCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217          184 --CIGSRD---FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       184 --~i~~l~---h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                        ......   ....+..+.|.+++..+++|..+.+... ...++..........-...++.+.|.++++.++++
T Consensus       315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G  388 (398)
T PLN00033        315 DFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG  388 (398)
T ss_pred             ccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe
Confidence              222222   2235889999999988888866655444 34443322111112224578899998887755443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=84.63  E-value=14  Score=44.61  Aligned_cols=105  Identities=11%  Similarity=0.165  Sum_probs=67.5

Q ss_pred             CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe--ecCCCCeEEEEEc--CCCC-EEEEEECCcEEEEEc-----
Q 004217          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFH--ASGE-LLAVASGHKLYIWRY-----  219 (767)
Q Consensus       150 ~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~--l~h~~~VtsVafS--PdG~-~LAsgSdd~V~VWDl-----  219 (767)
                      ..+.-+.-+. -++..+.-+...++.|||.+.+.....  +...+.|..+.|.  |+|+ .|++|-.+.|.+|--     
T Consensus        30 ~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   30 SNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            3444555555 445555555566899999999886655  3458899999985  5776 566666777888743     


Q ss_pred             CCCcccc-C--CeEEecC-CCCeEEEEEccCCCeEEEEEe
Q 004217          220 NMREETS-S--PRIVLRT-RRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       220 ~t~~~~~-~--~~~l~~h-~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ....... .  ...+..+ ..+|.+..|.+||..++++|.
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN  148 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN  148 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence            1111111 0  1112334 368999999999997777765

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=84.38  E-value=47  Score=36.64  Aligned_cols=144  Identities=15%  Similarity=0.161  Sum_probs=84.0

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCCe------EEEEECCC--C--eEE-----EEEccCCC--------CcEEEEEccCCCc
Q 004217          107 PRSTIAAAFSPDGKTLASTHGDHT------VKIIDCQT--G--SCL-----KVLHGHRR--------TPWVVRFHPLNPT  163 (767)
Q Consensus       107 ~~sVtsVaFSpDG~~LASgs~DGt------VrVWDl~t--g--~~l-----~~L~gH~~--------~V~sLafsP~dg~  163 (767)
                      -+.+..|.+.+++..+++.++++.      +..+++..  +  ..+     ..++.-.+        ..-+|++.+ ++.
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCC
Confidence            456788888865556666677666      55555433  1  111     11222112        344788855 888


Q ss_pred             EEEEEeCC------CeEEEEECCCCeEEEee----------------cCCCCeEEEEEcCCCCEEEEEEC------C--c
Q 004217          164 IIASGSLD------HEVRLWNASTAECIGSR----------------DFYRPIASIAFHASGELLAVASG------H--K  213 (767)
Q Consensus       164 lLaSgS~D------GtVrIWDl~tg~~i~~l----------------~h~~~VtsVafSPdG~~LAsgSd------d--~  213 (767)
                      ++++.-.+      ..|+.+|.. |+.+..+                ..+....+++++|+|+.|+++..      +  .
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence            88887777      788888876 5554332                13456789999999996655531      1  1


Q ss_pred             -------EEEEEc--CCCc-cccCCeEEec------CCCCeEEEEEccCCCeEEE
Q 004217          214 -------LYIWRY--NMRE-ETSSPRIVLR------TRRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       214 -------V~VWDl--~t~~-~~~~~~~l~~------h~~~VtsVaFSPDG~~Lla  252 (767)
                             ++++.+  .+.. ..........      ....|..+.+-+++++|+.
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                   455544  4312 1110111111      3567899999999996554

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=83.44  E-value=20  Score=34.90  Aligned_cols=110  Identities=12%  Similarity=0.085  Sum_probs=70.1

Q ss_pred             EEECCCCCeEEEEeCCCeEEEEECCCC--------eEEEEEccCCCCcEEEEEcc---C-CCcEEEEEeCCCeEEEEECC
Q 004217          113 AAFSPDGKTLASTHGDHTVKIIDCQTG--------SCLKVLHGHRRTPWVVRFHP---L-NPTIIASGSLDHEVRLWNAS  180 (767)
Q Consensus       113 VaFSpDG~~LASgs~DGtVrVWDl~tg--------~~l~~L~gH~~~V~sLafsP---~-dg~lLaSgS~DGtVrIWDl~  180 (767)
                      -+|......|++++.-++|.|++....        ..+..|. -...|++++-.+   . +.+.|+.|+ ...+..||+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence            345555556777777788888876532        2233333 345677775433   2 345566654 5679999999


Q ss_pred             CCeEEEeecCCCCeEEEEEcC----CCCEEEEEECCcEEEEEcCCCcc
Q 004217          181 TAECIGSRDFYRPIASIAFHA----SGELLAVASGHKLYIWRYNMREE  224 (767)
Q Consensus       181 tg~~i~~l~h~~~VtsVafSP----dG~~LAsgSdd~V~VWDl~t~~~  224 (767)
                      ...-+...+....|+++.+-.    +..++++|+.-.|.-||....+.
T Consensus        82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI  129 (136)
T ss_pred             cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence            887776666667788887643    33467777666688777665543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=83.31  E-value=35  Score=37.61  Aligned_cols=137  Identities=14%  Similarity=0.154  Sum_probs=73.6

Q ss_pred             EEcCCCEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCCeEEEEeCCCeEEEEEC-CCCeEEEE--Ec--c
Q 004217           77 GRDARRGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC-QTGSCLKV--LH--G  147 (767)
Q Consensus        77 ~sd~g~~LaSgs~DgsIrlWd~~t~~L~----gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl-~tg~~l~~--L~--g  147 (767)
                      -.+++..++.+.....+.-|+.-.....    .-...|..+.|++|+.+.+.+ ..|.|+.=+. ...+....  ..  .
T Consensus       152 r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~  230 (302)
T PF14870_consen  152 RSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKT  230 (302)
T ss_dssp             E-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS
T ss_pred             ECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCccc
Confidence            3467777777766666678876543222    235679999999998776654 8888888872 22222211  11  1


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee----cCCCCeEEEEEcCCCCEEEEEECCcEEEE
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAFHASGELLAVASGHKLYIW  217 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l----~h~~~VtsVafSPdG~~LAsgSdd~V~VW  217 (767)
                      -.-.+..++|.+ +..+.++|+ .|++ +.....|+.-+..    ......+.|.|..+.+-++.|.++-|.-|
T Consensus       231 ~~~~~ld~a~~~-~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  231 NGYGILDLAYRP-PNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             --S-EEEEEESS-SS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             CceeeEEEEecC-CCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence            222478899998 667777665 4433 3344555544442    23456888999888788888877665443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=83.24  E-value=7  Score=43.58  Aligned_cols=82  Identities=13%  Similarity=0.055  Sum_probs=53.3

Q ss_pred             eEEEEECCCCCeEEEEeC--------C--CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEe-CCCeEEEEE
Q 004217          110 TIAAAFSPDGKTLASTHG--------D--HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS-LDHEVRLWN  178 (767)
Q Consensus       110 VtsVaFSpDG~~LASgs~--------D--GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS-~DGtVrIWD  178 (767)
                      -.-+++++..++|+.--.        |  ..|.++|+.+++.+.++.. ...+.+|..+.++..+|+..+ .++.+.+||
T Consensus       240 ~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D  318 (342)
T PF06433_consen  240 WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD  318 (342)
T ss_dssp             SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence            345666665545444211        1  2488889999999988863 235779999985555776554 589999999


Q ss_pred             CCCCeEEEeecCCC
Q 004217          179 ASTAECIGSRDFYR  192 (767)
Q Consensus       179 l~tg~~i~~l~h~~  192 (767)
                      ..+++.++.++.-+
T Consensus       319 ~~tGk~~~~~~~lG  332 (342)
T PF06433_consen  319 AATGKLVRSIEQLG  332 (342)
T ss_dssp             TTT--EEEEE---S
T ss_pred             CcCCcEEeehhccC
Confidence            99999999876433

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=83.06  E-value=22  Score=44.09  Aligned_cols=109  Identities=14%  Similarity=0.028  Sum_probs=70.8

Q ss_pred             CCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCC--------cEEEEEcc---------------CCCcEEEEEeCCCeE
Q 004217          118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT--------PWVVRFHP---------------LNPTIIASGSLDHEV  174 (767)
Q Consensus       118 DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~--------V~sLafsP---------------~dg~lLaSgS~DGtV  174 (767)
                      .+..|+.++.++.|.-.|.++|+.+.++.-....        ...+.+..               .....++.++.|+.+
T Consensus       193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            3567777888899999999999988877532211        12233321               023477788899999


Q ss_pred             EEEECCCCeEEEeecCCCCeE-------------EEEEcC--CCCEEEEEE-----------CCcEEEEEcCCCcccc
Q 004217          175 RLWNASTAECIGSRDFYRPIA-------------SIAFHA--SGELLAVAS-----------GHKLYIWRYNMREETS  226 (767)
Q Consensus       175 rIWDl~tg~~i~~l~h~~~Vt-------------sVafSP--dG~~LAsgS-----------dd~V~VWDl~t~~~~~  226 (767)
                      .-.|.++|+.+..+...+.|.             .+.-.|  .+..+++|+           .+.|+-+|+++++...
T Consensus       273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence            999999999998765444331             111112  123455553           1239999999998766

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.23  E-value=19  Score=41.52  Aligned_cols=140  Identities=13%  Similarity=0.102  Sum_probs=91.3

Q ss_pred             EEEEECCCCCeEEEEeCCCeEEEEECCCC---eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe
Q 004217          111 IAAAFSPDGKTLASTHGDHTVKIIDCQTG---SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS  187 (767)
Q Consensus       111 tsVaFSpDG~~LASgs~DGtVrVWDl~tg---~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~  187 (767)
                      +.+-|....++|+ +...|.+.=|-+...   -++..-...+++|.++.|++ |.+.++.--.|++|.+++....+....
T Consensus        26 ngvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~  103 (657)
T KOG2377|consen   26 NGVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLE  103 (657)
T ss_pred             cceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhH
Confidence            3444554333333 333444555554321   12222233567999999999 999999999999999999855444333


Q ss_pred             ec----C-CCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          188 RD----F-YRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       188 l~----h-~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ..    . ...|....|+.+ .-+|.-.+.++-+|-+...+.  ..+....|.-.|+-..|.++.+.++.+.+
T Consensus       104 ~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekr--slRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  104 YTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKR--SLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             HHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhh--hhhhhhhcccCccEEEEccccceEeeecc
Confidence            22    2 234788889866 677777888888887765443  23456678888999999999887666554

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=81.52  E-value=26  Score=36.67  Aligned_cols=102  Identities=14%  Similarity=0.130  Sum_probs=66.6

Q ss_pred             CeEEEEeCCCeEEEEECCC--CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCC------CeEEEE---ECC--CCeEE-
Q 004217          120 KTLASTHGDHTVKIIDCQT--GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD------HEVRLW---NAS--TAECI-  185 (767)
Q Consensus       120 ~~LASgs~DGtVrVWDl~t--g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~D------GtVrIW---Dl~--tg~~i-  185 (767)
                      +.|+.+...+.|.+|++.+  .+.+..|..- +.|..+.++. .++++++--.+      ..+|+|   +..  ..+.+ 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~  106 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR  106 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence            4444445567899999983  3455666543 7899999999 89999996432      256665   222  11111 


Q ss_pred             -Ee---------------------ecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCc
Q 004217          186 -GS---------------------RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE  223 (767)
Q Consensus       186 -~~---------------------l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~  223 (767)
                       +.                     +.....+.+++-.|..--|++|+++++.+|.+....
T Consensus       107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~  166 (215)
T PF14761_consen  107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQT  166 (215)
T ss_pred             EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEE
Confidence             11                     123346678888887667778889999999876543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=80.63  E-value=1.6e+02  Score=37.26  Aligned_cols=173  Identities=14%  Similarity=0.172  Sum_probs=95.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCC-CCCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE-ccCCCCcEEEEE
Q 004217           80 ARRGLASWVEAESLHHLRPKY-CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRF  157 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t-~~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L-~gH~~~V~sLaf  157 (767)
                      .+..|+-.. .+.||+++-.. ...-..++.++....+.+...++.++.++.+...++..+...... +.-...|.|+.+
T Consensus       460 ~g~~lvQvT-s~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDi  538 (1096)
T KOG1897|consen  460 NGNQLVQVT-SNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDI  538 (1096)
T ss_pred             CCceEEEEe-cccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEec
Confidence            333344332 33466666541 111223455666666666778888888888887787766522211 223457899999


Q ss_pred             ccC--CCc---EEEEEeCCCeEEEEEC-CCCeEEEee--c---CCCCeEEEEEcCCCCEEEEEECCc-E--EEEEcCCCc
Q 004217          158 HPL--NPT---IIASGSLDHEVRLWNA-STAECIGSR--D---FYRPIASIAFHASGELLAVASGHK-L--YIWRYNMRE  223 (767)
Q Consensus       158 sP~--dg~---lLaSgS~DGtVrIWDl-~tg~~i~~l--~---h~~~VtsVafSPdG~~LAsgSdd~-V--~VWDl~t~~  223 (767)
                      +|.  +.+   +++.|..+..+.+--. .+...+...  .   ....|--..|--|..+|.++..++ +  +++|..++.
T Consensus       539 sp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~  618 (1096)
T KOG1897|consen  539 SPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQ  618 (1096)
T ss_pred             ccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccce
Confidence            974  333   8888888776655433 333332222  1   233455556666677888888766 4  455666655


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       224 ~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      ..... ...-...++.=-.|+..++.-+.++
T Consensus       619 lsd~K-k~~lGt~P~~Lr~f~sk~~t~vfa~  648 (1096)
T KOG1897|consen  619 LSDRK-KVTLGTQPISLRTFSSKSRTAVFAL  648 (1096)
T ss_pred             Ecccc-ccccCCCCcEEEEEeeCCceEEEEe
Confidence            43311 1122244555555666555444443

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=80.59  E-value=12  Score=39.27  Aligned_cols=25  Identities=16%  Similarity=0.332  Sum_probs=18.0

Q ss_pred             CCCCeEEEEEccCCCeEEEEEeeCC
Q 004217          234 TRRSLRAVHFHPHAAPLLLTAEVND  258 (767)
Q Consensus       234 h~~~VtsVaFSPDG~~LlaSgsvwd  258 (767)
                      +.+-.+.+++.|++..++.+++.|-
T Consensus       227 ~~nvlNGIA~~~~~~r~~iTGK~wp  251 (262)
T COG3823         227 NDNVLNGIAHDPQQDRFLITGKLWP  251 (262)
T ss_pred             ccccccceeecCcCCeEEEecCcCc
Confidence            3445677888888877888887663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	767
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-11
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-11
2h9l_A	329	Wdr5delta23 Length = 329		3e-11
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-11
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-11
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-11
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-11
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-11
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-11
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-11
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-11
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-11
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-11
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-11
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-11
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-11
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		6e-11
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-10
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-07
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-07
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-07
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		5e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		5e-07
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		5e-07
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		6e-07
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		9e-07
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		4e-06
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		5e-06
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		6e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		6e-06
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		7e-06
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		7e-06
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		7e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-06
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		9e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		2e-04
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-04
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-04
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		5e-04
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		5e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		7e-04

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW-VVRFHPLNPTIIASGSL 170
           A  F+ DG  + S+  D   +I D  +G CLK L      P   V+F P N   I + +L
Sbjct: 178 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATL 236
Query: 171 DHEVRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223
           D+ ++LW+ S  +C+ +      + Y   A+ +      +++ +  + +YIW    +E
Sbjct: 237 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 294

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW-VVRFHPLNPTIIASGSL 170
           A  F+ DG  + S+  D   +I D  +G CLK L      P   V+F P N   I + +L
Sbjct: 176 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATL 234
Query: 171 DHEVRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223
           D+ ++LW+ S  +C+ +      + Y   A+ +      +++ +  + +YIW    +E
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 146 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 205
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 206 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 264
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 265 GGKWIVSGSEDNLVYIWNLQTKE 287

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 195 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 253
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 254 GGKWIVSGSEDNLVYIWNLQTKE 276

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 195 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 253
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 254 GGKWIVSGSEDNLVYIWNLQTKE 276

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 12/175 (6%)
Query: 60  GETARKCSGSFSQIFEAGRDARRGL---ASWVEAESLHHLRPKYCPLSPPPRSTIAAA-- 114
           G+  +   G  + +F    + +  L    S+ E+  +  ++   C  + P  S   +A  
Sbjct: 103 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 162
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW-VVRFHPLNPTIIASGSLDHE 173
           F+ DG  + S+  D   +I D  +G CLK L      P   V+F P N   I + +LD+ 
Sbjct: 163 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNT 221
Query: 174 VRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223
           ++LW+ S  +C+ +      + Y   A+ +      +++ +  + +YIW    +E
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
            A+S D   L S   D T+KI D  +G CLK L GH    +   F+P    +I SGS D 
Sbjct: 74  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 132
Query: 173 EVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVASGHKL-YIWRYNMREETSSPR- 229
            VR+W+  T  C+ +   +  P++++ F+  G L+  +S   L  IW      +T+S + 
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW------DTASGQC 186
Query: 230 ---IVLRTRRSLRAVHFHPHAAPLLLTAEVNDL 259
              ++      +  V F P+   +L     NDL
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNDL 219

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 85  ASWVEAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCL 142
            S+ E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CL
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 143 KVLHGHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIAS 196
           K L      P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+
Sbjct: 188 KTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 246
Query: 197 IAFHASGELLAVASGHKLYIWRYNMRE 223
            +      +++ +  + +YIW    +E
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIWNLQTKE 273

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 130 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 189
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 190 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 248
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 249 GGKWIVSGSEDNLVYIWNLQTKE 271

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 188
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 189 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 248 GGKWIVSGSEDNLVYIWNLQTKE 270

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 85  ASWVEAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCL 142
            S+ E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CL
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 143 KVLHGHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIAS 196
           K L      P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+
Sbjct: 188 KTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 246
Query: 197 IAFHASGELLAVASGHKLYIWRYNMRE 223
            +      +++ +  + +YIW    +E
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIWNLQTKE 273

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 188
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 189 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 248 GGKWIVSGSEDNLVYIWNLQTKE 270

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 134 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 193
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 194 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 252
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 253 GGKWIVSGSEDNLVYIWNLQTKE 275

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 125 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 184
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 185 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 243
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 244 GGKWIVSGSEDNLVYIWNLQTKE 266

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 87  WVEAESLHHLRPKYCPLSPPPRSTIAA--------AFSPDGKTLASTHGDHTVKIIDCQT 138
           W+ A S   L   +         TI+         A+S D   L S   D T+KI D  +
Sbjct: 40  WLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR-PIASI 197
           G CLK L GH    +   F+P    +I SGS D  VR+W+  T +C+ +   +  P++++
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
Query: 198 AFHASGELLAVAS 210
            F+  G L+  +S
Sbjct: 159 HFNRDGSLIVSSS 171

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 128 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 187
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 188 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 246
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 247 GGKWIVSGSEDNLVYIWNLQTKE 269

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 132 ESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 192 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKE 273

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 15/142 (10%)
Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
           AFSPDG+T+AS   D TVK+ + + G  L+ L GH  + W V F P + T IAS S D  
Sbjct: 392 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQT-IASASDDKT 449
Query: 174 VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVL 232
           V+LWN +             +  +AF   G+ +A AS  K + +W  N +        +L
Sbjct: 450 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--------LL 501
Query: 233 RT----RRSLRAVHFHPHAAPL 250
           +T      S+R V F P    +
Sbjct: 502 QTLTGHSSSVRGVAFSPDGQTI 523

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Query: 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS--CLKVL-HGHRRTPWVVRFH 158
           P  P  R    A ++P G  LAS  GD  ++I   +  S  C  VL  GH+RT   V + 
Sbjct: 12  PAHPDSRCWFLA-WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS 70
Query: 159 PLNPTIIASGSLDHEVRLW--NASTAECIGSRDFYR-PIASIAFHASGELLAVASGHK-L 214
           P     +AS S D    +W  N    EC+ + + +   + S+A+  SG LLA  S  K +
Sbjct: 71  PCG-NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSV 129
Query: 215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVND 258
           ++W  +  +E     ++    + ++ V +HP +  LL +A  +D
Sbjct: 130 WVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDD 172

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP-LNPTIIASGSL 170
           + +  P+G  + S   D T+K+ + QTG C+K   GHR   WV    P  + T+IAS S 
Sbjct: 197 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--WVRMVRPNQDGTLIASCSN 254
Query: 171 DHEVRLWNASTAEC 184
           D  VR+W  +T EC
Sbjct: 255 DQTVRVWVVATKEC 268

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 84  LASWVEAESLHHLRPKYCPLSPPPRSTI---AAAFSPDGKTLASTHGDHTVKIIDCQTGS 140
           L + +  +S  +  P+    S  P S +   +  FSPDGK LA+   D  ++I D +   
Sbjct: 97  LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK 156
Query: 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH 200
            + +L GH +  + + + P    ++ SGS D  VR+W+  T +C  +      + ++A  
Sbjct: 157 IVMILQGHEQDIYSLDYFPSGDKLV-SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 215
Query: 201 -ASGELLAVAS 210
              G+ +A  S
Sbjct: 216 PGDGKYIAAGS 226

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
           PD   + +   D T+KI D QT SC+  L GH        FHP  P II SGS D  +++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII-SGSEDGTLKI 254
Query: 177 WNASTAECIGSRDF-YRPIASIAFHASGELLAVASG 211
           WN+ST +   + +        IA H +G    +ASG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
           PD   + +   D T+KI D QT SC+  L GH        FHP  P II SGS D  +++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 177 WNASTAECIGSRDF-YRPIASIAFHASGELLAVASG 211
           WN+ST +   + +        IA H +G    +ASG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
           PD   + +   D T+KI D QT SC+  L GH        FHP  P II SGS D  +++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 177 WNASTAECIGSRDF-YRPIASIAFHASGELLAVASG 211
           WN+ST +   + +        IA H +G    +ASG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
           PD   + +   D T+KI D QT SC+  L GH        FHP  P II SGS D  +++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII-SGSEDGTLKI 254
Query: 177 WNASTAECIGSRDF-YRPIASIAFHASGELLAVASG 211
           WN+ST +   + +        IA H +G    +ASG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL 160
           C  +     ++ +        L S + D TVKI D +TG CL+ L G  +    V     
Sbjct: 311 CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 370
Query: 161 NPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASG 203
           N   + + S D  V+LW+  T E      F R + ++    SG
Sbjct: 371 NKNFVITSSDDGTVKLWDLKTGE------FIRNLVTLESGGSG 407

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----- 185
           ++II+  T  C+K   GH      ++FHP +P ++ S S DH +RLWN  T   +     
Sbjct: 133 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 192
Query: 186 --GSRDFYRPIASIAFHASGE-LLAVASGHKLYIWRYNMR 222
             G RD    + S  +   GE +++    H L +WR N +
Sbjct: 193 VEGHRD---EVLSADYDLLGEKIMSCGMDHSLKLWRINSK 229

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----- 185
           ++II+  T  C+K   GH      ++FHP +P ++ S S DH +RLWN  T   +     
Sbjct: 92  IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 151
Query: 186 --GSRDFYRPIASIAFHASGE-LLAVASGHKLYIWRYNMREETSSPR 229
             G RD    + S  +   GE +++    H L +WR N +   ++ +
Sbjct: 152 VEGHRD---EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 195

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 79  DARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT 138
           D  R    W+  +++ +L      + P   +   A FS DG+ +AS   D T+++   +T
Sbjct: 596 DTGRLYLEWINKKTIKNLSR--LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET 653
Query: 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-RPIASI 197
           G  L  +  H        F   + + IA+ S D +V++W+++T + + + D +   +   
Sbjct: 654 GEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 712
Query: 198 AFHASGELLAVASGHK---LYIWRYNMRE 223
            F      L +A+G     L +W  N +E
Sbjct: 713 HFTNKSNHLLLATGSNDFFLKLWDLNQKE 741

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----- 185
           ++II+  T  C+K   GH      ++FHP +P ++ S S DH +RLWN  T   +     
Sbjct: 97  IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156
Query: 186 --GSRDFYRPIASIAFHASGE-LLAVASGHKLYIWRYNMREETSSPR 229
             G RD    + S  +   GE +++    H L +WR N +   ++ +
Sbjct: 157 VEGHRD---EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 200

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----- 185
           ++II+  T  C+K   GH      ++FHP +P ++ S S DH +RLWN  T   +     
Sbjct: 96  IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 186 --GSRDFYRPIASIAFHASGE-LLAVASGHKLYIWRYNMREETSSPR 229
             G RD    + S  +   GE +++    H L +WR N +   ++ +
Sbjct: 156 VEGHRD---EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----- 185
           ++II+  T  C+K   GH      ++FHP +P ++ S S DH +RLWN  T   +     
Sbjct: 96  IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 186 --GSRDFYRPIASIAFHASGE-LLAVASGHKLYIWRYNMREETSSPR 229
             G RD    + S  +   GE +++    H L +WR N +   ++ +
Sbjct: 156 VEGHRD---EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 79  DARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT 138
           D  R    W+  +++ +L      + P   +   A FS DG+ +AS   D T+++   +T
Sbjct: 589 DTGRLYLEWINKKTIKNLSR--LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET 646
Query: 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-RPIASI 197
           G  L  +  H        F   + + IA+ S D +V++W+++T + + + D +   +   
Sbjct: 647 GEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 705
Query: 198 AFHASGELLAVASGHK---LYIWRYNMRE 223
            F      L +A+G     L +W  N +E
Sbjct: 706 HFTNKSNHLLLATGSNDFFLKLWDLNQKE 734

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLW 177
           D K + S  GD T+K+ +  T   ++ L+GH+R    +++      ++ SGS D+ +RLW
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLW 321
Query: 178 NASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIW 217
           +     C+   + +  +       +  +++ A   K+ +W
Sbjct: 322 DIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW 361

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSRD 189
           V++ D ++GSC  +L GHR+    V + P    I+A+ S D  V+LW+   A  C+ + D
Sbjct: 168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD 227
Query: 190 FYR----------------PIASIAFHASG-ELLAVASGHKLYIWRYNMREET 225
            +                  +  + F + G  LL V + +++ +W  +  E T
Sbjct: 228 QHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT 280

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSC----LKVLHGHRRTPWVVRFHPLNPTIIASG-- 168
           ++PDG+ LAS   D+ V +     G      L+    H+     V + P    ++A+G  
Sbjct: 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 297
Query: 169 SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-----KLYIWRY 219
           + D  +R+WN  +  C+ + D +  + SI +  S     + SGH     +L IW+Y
Sbjct: 298 TSDRHIRIWNVCSGACLSAVDAHSQVCSILW--SPHYKELISGHGFAQNQLVIWKY 351

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSC----LKVLHGHRRTPWVVRFHPLNPTIIASG-- 168
           ++PDG+ LAS   D+ V +     G      L+    H+     V + P    ++A+G  
Sbjct: 249 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 308
Query: 169 SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-----KLYIWRY 219
           + D  +R+WN  +  C+ + D +  + SI +  S     + SGH     +L IW+Y
Sbjct: 309 TSDRHIRIWNVCSGACLSAVDAHSQVCSILW--SPHYKELISGHGFAQNQLVIWKY 362

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
           FS  G+ L + + D+T+ + D   GS + +L GH      +R  P + T   SGS DH +
Sbjct: 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTL 350
Query: 175 RLW 177
           R+W
Sbjct: 351 RVW 353

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSC----LKVLHGHRRTPWVVRFHPLNPTIIASG-- 168
           ++PDG+ LAS   D+ V +     G      L+    H+     V + P    ++A+G  
Sbjct: 158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 217
Query: 169 SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-----KLYIWRY 219
           + D  +R+WN  +  C+ + D +  + SI +  S     + SGH     +L IW+Y
Sbjct: 218 TSDRHIRIWNVCSGACLSAVDAHSQVCSILW--SPHYKELISGHGFAQNQLVIWKY 271

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 67/168 (39%), Gaps = 17/168 (10%)
Query: 57  RLLGETARKCSGSFS----QIFEAGRDARRGLASW-VEAESLHHL-RPKYCPLSPPPRST 110
           + LG T    S +FS    QI   GRD    L  W V+ E +H L R  +       R  
Sbjct: 104 KFLGHTKDVLSVAFSPDNRQIVSGGRD--NALRVWNVKGECMHTLSRGAHTDWVSCVR-- 159
Query: 111 IAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG 168
               FSP  D   + S   D+ VK+ D  TG  +  L GH      V   P + ++ AS 
Sbjct: 160 ----FSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP-DGSLCASS 214
Query: 169 SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYI 216
             D   RLW+ +  E +       PI  I F  +   +  A+   + I
Sbjct: 215 DKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRI 262

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD 171
           A A SPD K   S   D  + + D    + ++   GH      +     + T + +G LD
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLD 204
Query: 172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVA 209
           + VR W+      +   DF   I S+ +  +GE LAV 
Sbjct: 205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVG 242

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	767
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.97
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.96
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.95
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.95
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.95
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.95
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.95
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.95
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.94
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.94
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.94
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.94
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.94
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.94
2pm7_B	297	Protein transport protein SEC13, protein transport	99.94
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.94
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.94
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.94
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.93
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.93
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.93
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.93
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.93
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.93
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.93
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.93
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.92
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.92
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.92
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.92
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.92
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.92
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.92
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.92
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.92
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.92
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.92
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.92
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.92
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.92
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.92
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.92
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.91
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.91
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.91
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.91
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.91
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.91
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.91
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.91
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.91
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.9
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.9
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.9
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.9
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.9
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.9
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.9
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.9
2pm7_B	297	Protein transport protein SEC13, protein transport	99.9
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.9
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.89
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.89
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.89
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.89
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.89
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.89
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.89
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.89
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.89
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.89
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.89
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.89
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.89
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.88
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.88
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.88
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.88
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.88
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.88
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.88
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.88
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.88
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.88
3jro_A	753	Fusion protein of protein transport protein SEC13	99.87
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.87
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.87
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.87
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.87
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.87
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.87
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.87
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.86
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.86
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.86
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.86
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.86
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.85
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.85
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.85
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.85
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.84
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.84
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.84
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.84
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.84
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.84
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.84
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.83
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.83
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.83
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.83
3jro_A	753	Fusion protein of protein transport protein SEC13	99.82
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.82
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.81
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.81
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.81
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.81
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.81
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.8
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.79
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.78
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.76
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.74
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.73
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.73
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.71
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.71
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.71
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.71
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.69
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.68
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.67
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.67
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.66
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.66
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.66
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.65
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.64
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.63
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.63
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.62
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.59
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.59
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.58
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.57
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.57
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.55
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.54
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.53
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.53
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.53
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.52
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.51
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.5
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.48
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.48
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.47
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.45
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.43
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.41
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.35
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.33
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.33
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.32
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.27
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.2
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.18
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.18
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.18
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.16
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.14
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.14
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.14
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.13
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.12
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.12
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.11
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.11
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.09
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.08
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.02
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.01
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.0
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.96
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.96
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.9
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.89
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.85
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.79
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.79
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.79
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.78
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.73
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.73
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.71
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.67
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.67
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.67
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.66
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.63
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.58
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.56
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.55
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.55
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.54
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.52
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.48
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.47
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.47
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.44
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.43
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.38
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.33
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.32
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.32
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.24
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.24
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.24
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.24
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.21
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.16
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.15
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.12
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.08
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.02
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.99
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.95
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.91
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.86
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.74
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.74
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.64
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.61
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.59
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.57
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.55
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.54
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.5
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.45
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.45
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.43
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.43
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.4
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.38
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.36
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.36
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.35
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.34
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.28
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.23
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.15
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.14
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.14
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.13
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.11
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.04
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.02
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.98
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.97
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.9
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.89
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.86
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.85
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.76
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.76
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.73
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.67
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.66
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.61
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.59
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.58
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.52
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.5
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.48
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.3
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.25
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.21
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.19
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.16
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.09
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.08
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.06
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.91
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.84
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.82
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	95.72
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.71
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.63
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.56
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.45
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.4
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.12
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.02
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.0
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.93
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	94.85
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.67
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.61
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.61
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.29
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.22
3ott_A	758	Two-component system sensor histidine kinase; beta	92.62
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	92.32
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	92.15
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.93
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	91.29
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	90.97
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	89.75
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	89.46
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	88.92
3ott_A	758	Two-component system sensor histidine kinase; beta	88.67
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	88.55
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	87.55
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	87.52
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	86.9
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	85.84
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	85.54
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	85.17
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	84.47
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	84.45
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	83.53
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	82.53
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	82.4
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	81.1
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	80.57
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	80.2
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	80.14

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.97  E-value=1.8e-27  Score=274.65  Aligned_cols=262  Identities=14%  Similarity=0.135  Sum_probs=199.2

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCeEEEEeCC----CeEEEEECCCCe
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGD----HTVKIIDCQTGS  140 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSpDG~~LASgs~D----GtVrVWDl~tg~  140 (767)
                      ...+++++.++.+|++++.|++|++||..++      .+.+|.+.|.+++|+|||++|++++.+    ++|++||  +++
T Consensus        61 ~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~  138 (611)
T 1nr0_A           61 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGT  138 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCC
T ss_pred             ceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCC
Confidence            4677889999999999999999999998643      356899999999999999999998875    4778887  466


Q ss_pred             EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEE
Q 004217          141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWR  218 (767)
Q Consensus       141 ~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWD  218 (767)
                      .+..+.+|...|.+++|+|++...|++++.|++|++||..++++...+. |...|.+++|+|+|++|++++.|+ |++||
T Consensus       139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd  218 (611)
T 1nr0_A          139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN  218 (611)
T ss_dssp             BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEE
Confidence            6778899999999999999333479999999999999999988887764 889999999999999999999766 99999


Q ss_pred             cCCCccccCCeEE-e------cCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccC---------
Q 004217          219 YNMREETSSPRIV-L------RTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRY---------  277 (767)
Q Consensus       219 l~t~~~~~~~~~l-~------~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~---------  277 (767)
                      +.+++...   .+ .      +|...|++++|+|||++|++++.     +||+..++....+.....+...         
T Consensus       219 ~~~g~~~~---~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (611)
T 1nr0_A          219 GVDGTKTG---VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ  295 (611)
T ss_dssp             TTTCCEEE---ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS
T ss_pred             CCCCcEee---eeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCC
Confidence            98887544   22 1      79999999999999998777654     8888766554443321111000         


Q ss_pred             ------CCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCC
Q 004217          278 ------PPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPS  351 (767)
Q Consensus       278 ------p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~  351 (767)
                            ....+.+|+...+.   ..........++...+|+||+++++...                 ....+..||..+
T Consensus       296 ~l~s~s~d~~i~~~~~~~~~---~~~~~~gh~~~v~~l~~spdg~~l~s~s-----------------~D~~v~~Wd~~~  355 (611)
T 1nr0_A          296 ALVSISANGFINFVNPELGS---IDQVRYGHNKAITALSSSADGKTLFSAD-----------------AEGHINSWDIST  355 (611)
T ss_dssp             CEEEEETTCCEEEEETTTTE---EEEEECCCSSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTT
T ss_pred             EEEEEeCCCcEEEEeCCCCC---cceEEcCCCCCEEEEEEeCCCCEEEEEe-----------------CCCcEEEEECCC
Confidence                  11233444433222   1111223455677899999999998722                 233578999988


Q ss_pred             Cceeee
Q 004217          352 GQYELV  357 (767)
Q Consensus       352 ~q~~~~  357 (767)
                      ++....
T Consensus       356 ~~~~~~  361 (611)
T 1nr0_A          356 GISNRV  361 (611)
T ss_dssp             CCEEEC
T ss_pred             Cceeee
Confidence            766543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.96  E-value=6.6e-27  Score=252.58  Aligned_cols=180  Identities=14%  Similarity=0.130  Sum_probs=154.6

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC--------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP--------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK  143 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~--------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~  143 (767)
                      ...+++..+ ..|++++.|++|++||+.+++        +.+|.+.|++++|+|||++|++|+.|++|+|||+++++++.
T Consensus        85 v~~~~~s~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~  163 (344)
T 4gqb_B           85 VADLTWVGE-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS  163 (344)
T ss_dssp             EEEEEEETT-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEEEeCC-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            555666665 578899999999999998763        33899999999999999999999999999999999999999


Q ss_pred             EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec---CCCCeEEEEEcCC-CCEEEEEECCc-EEEEE
Q 004217          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHAS-GELLAVASGHK-LYIWR  218 (767)
Q Consensus       144 ~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~---h~~~VtsVafSPd-G~~LAsgSdd~-V~VWD  218 (767)
                      .+.+|...|.+++|+|++..+|++++.|++|++||++++++...+.   +...+.+++|+|+ +++|++|+.|+ |++||
T Consensus       164 ~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd  243 (344)
T 4gqb_B          164 SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVD  243 (344)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             EEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEE
Confidence            9999999999999999555789999999999999999999887754   4567999999995 46888998666 99999


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +++++.+.   .+.+|...|++++|+|++..++++++
T Consensus       244 ~~~~~~~~---~~~~h~~~v~~v~fsp~g~~~lasgs  277 (344)
T 4gqb_B          244 TKSTSCVL---SSAVHSQCVTGLVFSPHSVPFLASLS  277 (344)
T ss_dssp             SCC--CCE---EEECCSSCEEEEEECSSSSCCEEEEE
T ss_pred             CCCCcEEE---EEcCCCCCEEEEEEccCCCeEEEEEe
Confidence            99887654   78899999999999999965555544

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.95  E-value=2.3e-26  Score=252.40  Aligned_cols=244  Identities=18%  Similarity=0.222  Sum_probs=199.4

Q ss_pred             cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217           70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L  145 (767)
                      ....++++..++..|++++.|++|++||..++    .+.+|.+.|.+++|+|++++|++|+.|++|+|||+.+++++..+
T Consensus       109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~  188 (410)
T 1vyh_C          109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM  188 (410)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE
Confidence            34777888899999999999999999999886    36799999999999999999999999999999999999999999


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCc
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMRE  223 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~  223 (767)
                      .+|...|.+++|+| ++++|++|+.|++|++||+++++++..+ .|...|.+++|+|+|++|++++.|+ |++||+++.+
T Consensus       189 ~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~  267 (410)
T 1vyh_C          189 HGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE  267 (410)
T ss_dssp             CCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             cCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            99999999999999 8999999999999999999999998876 4888999999999999999999766 9999999887


Q ss_pred             cccCCeEEecCCCCeEEEEEccC--------------------CCeEEEEEe-----eCCcCCCCcceeEeecCCCcc--
Q 004217          224 ETSSPRIVLRTRRSLRAVHFHPH--------------------AAPLLLTAE-----VNDLDSSESSLTLATSPGYWR--  276 (767)
Q Consensus       224 ~~~~~~~l~~h~~~VtsVaFSPD--------------------G~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~--  276 (767)
                      ...   .+..|...|.+++|+|+                    |.++++++.     +||++.+.....+..+.+...  
T Consensus       268 ~~~---~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v  344 (410)
T 1vyh_C          268 CKA---ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV  344 (410)
T ss_dssp             EEE---EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             eee---EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEE
Confidence            644   67789999999999997                    455555543     888887665444433322210  


Q ss_pred             ------------CCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEE
Q 004217          277 ------------YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (767)
Q Consensus       277 ------------~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva  320 (767)
                                  .....+.+|+...........+   ...++...+|+|++..|+.
T Consensus       345 ~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l~s  397 (410)
T 1vyh_C          345 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA---HEHFVTSLDFHKTAPYVVT  397 (410)
T ss_dssp             EECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC---CSSCEEEEEECSSSSCEEE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcC---CCCcEEEEEEcCCCCEEEE
Confidence                        0124466666555444433332   3445667889999888876

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.95  E-value=4.6e-26  Score=241.06  Aligned_cols=193  Identities=15%  Similarity=0.182  Sum_probs=165.1

Q ss_pred             eEEEEEEc-CCCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE
Q 004217           72 QIFEAGRD-ARRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC  141 (767)
Q Consensus        72 ~~~vA~sd-~g~~LaSgs~DgsIrlWd~~t~---------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~  141 (767)
                      ...+++.. ++..|++++.|++|++|++...         .+.+|...|.+++|+||+++|++|+.|++|+|||+.+++.
T Consensus        20 V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~   99 (319)
T 3frx_A           20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET   99 (319)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             EEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCe
Confidence            44566655 4589999999999999998532         3679999999999999999999999999999999999999


Q ss_pred             EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCC------CEEEEEECCc-E
Q 004217          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASG------ELLAVASGHK-L  214 (767)
Q Consensus       142 l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG------~~LAsgSdd~-V  214 (767)
                      +..+.+|...|.+++|+| ++.+|++|+.|++|++||++.........|...|.+++|+|.+      .+|++++.++ |
T Consensus       100 ~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i  178 (319)
T 3frx_A          100 YQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV  178 (319)
T ss_dssp             EEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCE
T ss_pred             eEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEE
Confidence            999999999999999999 8999999999999999999865555556799999999999954      4899998766 9


Q ss_pred             EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004217          215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL  268 (767)
Q Consensus       215 ~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l  268 (767)
                      ++||+++.+...   .+.+|...|++++|+|+|++|++++.     +||+........+
T Consensus       179 ~~wd~~~~~~~~---~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~  234 (319)
T 3frx_A          179 KAWNLNQFQIEA---DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL  234 (319)
T ss_dssp             EEEETTTTEEEE---EECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             EEEECCcchhhe---eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            999999876544   67789999999999999998877665     8888865544443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=1.7e-26  Score=250.36  Aligned_cols=268  Identities=17%  Similarity=0.181  Sum_probs=207.3

Q ss_pred             CCCCCCcceecccccccccCCCccCcceeecccccceecCCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-------
Q 004217           29 NHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC-------  101 (767)
Q Consensus        29 ~~r~sk~rnVf~~~~kre~~~~~~~~sk~~wd~~~~~~~~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-------  101 (767)
                      -.|.|||||+|+...+++.++.+.+.....|+.....++.++          ...+++++.|+.|++|+....       
T Consensus         5 ~~~~sk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~g~i~v~~~~~~~~~~~~~   74 (402)
T 2aq5_A            5 VVRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKF----------MALICEASGGGAFLVLPLGKTGRVDKNV   74 (402)
T ss_dssp             ---CCTTTTCEEEECCGGGSEESCCBCCCCCSSCSEEECSSE----------EEEEBCCSSSCCEEEEETTCCEECCTTC
T ss_pred             ccCCCCCccccCcCCChhhcEecceeecCccCCCcEEECCCe----------EEEEEEEcCCCEEEEEECccCCCCCCCC
Confidence            468999999999999999999999998888887765554222          122335678999999998542       


Q ss_pred             -CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCC-------eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCC
Q 004217          102 -PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH  172 (767)
Q Consensus       102 -~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg-------~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DG  172 (767)
                       .+.+|.+.|++++|+| ++++|++|+.|++|+|||+.++       +.+..+.+|...|.+++|+|++.++|++++.|+
T Consensus        75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg  154 (402)
T 2aq5_A           75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN  154 (402)
T ss_dssp             CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred             ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence             3668999999999999 9999999999999999999987       567889999999999999993347999999999


Q ss_pred             eEEEEECCCCeEEEee---cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEE-ecCCCC-eEEEEEccC
Q 004217          173 EVRLWNASTAECIGSR---DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV-LRTRRS-LRAVHFHPH  246 (767)
Q Consensus       173 tVrIWDl~tg~~i~~l---~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l-~~h~~~-VtsVaFSPD  246 (767)
                      +|++||+++++.+..+   .|...|.+++|+|++++|++++.++ |++||+++++.+.   .+ ..|... +.++.|+|+
T Consensus       155 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~  231 (402)
T 2aq5_A          155 VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA---EKDRPHEGTRPVHAVFVSE  231 (402)
T ss_dssp             CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECSSCSSSCCEEEECST
T ss_pred             EEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee---eeccCCCCCcceEEEEcCC
Confidence            9999999999998887   3889999999999999999999665 9999999987654   44 567665 899999999


Q ss_pred             CCeEEEEE---e-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEE
Q 004217          247 AAPLLLTA---E-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI  318 (767)
Q Consensus       247 G~~LlaSg---s-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rI  318 (767)
                      +++++++.   .     +||++........                           .  .......+..+.|+||++.+
T Consensus       232 ~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~---------------------------~--~~~~~~~v~~~~~s~~~~~l  282 (402)
T 2aq5_A          232 GKILTTGFSRMSERQVALWDTKHLEEPLSL---------------------------Q--ELDTSSGVLLPFFDPDTNIV  282 (402)
T ss_dssp             TEEEEEEECTTCCEEEEEEETTBCSSCSEE---------------------------E--ECCCCSSCEEEEEETTTTEE
T ss_pred             CcEEEEeccCCCCceEEEEcCccccCCceE---------------------------E--eccCCCceeEEEEcCCCCEE
Confidence            98666551   1     4544432221111                           0  01122345678999999999


Q ss_pred             EEeecCCCCCCcccccccccCCceeeeeccCCCCce
Q 004217          319 SLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQY  354 (767)
Q Consensus       319 va~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~  354 (767)
                      ++..                +....+.+|+..+++.
T Consensus       283 ~~~g----------------~~dg~i~i~d~~~~~~  302 (402)
T 2aq5_A          283 YLCG----------------KGDSSIRYFEITSEAP  302 (402)
T ss_dssp             EEEE----------------TTCSCEEEEEECSSTT
T ss_pred             EEEE----------------cCCCeEEEEEecCCCc
Confidence            7622                1223577888877763

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.95  E-value=6e-26  Score=241.41  Aligned_cols=231  Identities=14%  Similarity=0.168  Sum_probs=186.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcE
Q 004217           80 ARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~  153 (767)
                      ++..|++++.|++|++|+....      .+.+|...|.+++|++++.++++++.|++|+|||+.+++.+..+..|...+.
T Consensus        47 ~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~  126 (321)
T 3ow8_A           47 NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW  126 (321)
T ss_dssp             --CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCC
T ss_pred             CCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE
Confidence            5678999999999999998754      3689999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEE
Q 004217          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV  231 (767)
Q Consensus       154 sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l  231 (767)
                      +++|+| ++++|++++.|++|++||+++++....+. +...|.+++|+|+|++|++++.++ |++||+++++.+.   .+
T Consensus       127 ~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~---~~  202 (321)
T 3ow8_A          127 TLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH---TL  202 (321)
T ss_dssp             CEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---EE
T ss_pred             EEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE---EE
Confidence            999999 99999999999999999999998877754 678899999999999999999766 9999999987654   67


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccC-----------------CCCeEEEecCCC
Q 004217          232 LRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRY-----------------PPPVICMAGAHS  289 (767)
Q Consensus       232 ~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~-----------------p~~~v~l~~~~S  289 (767)
                      .+|...|++++|+|++++|++++.     +||++.......+   .+|...                 ....+.+|+...
T Consensus       203 ~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~  279 (321)
T 3ow8_A          203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL---SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT  279 (321)
T ss_dssp             CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE---cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence            789999999999999997776654     7888765544333   333221                 113345555443


Q ss_pred             CCCCceeeccCCCCCCceeeEEecCCCEEEE
Q 004217          290 SSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (767)
Q Consensus       290 sd~~~L~sg~~~~slpil~psFSpDg~rIva  320 (767)
                      +......   .....+++.++|++|+.+|+.
T Consensus       280 ~~~~~~~---~~h~~~v~~v~~s~~g~~l~s  307 (321)
T 3ow8_A          280 RTCVHTF---FDHQDQVWGVKYNGNGSKIVS  307 (321)
T ss_dssp             TEEEEEE---CCCSSCEEEEEECTTSSEEEE
T ss_pred             CEEEEEE---cCCCCcEEEEEECCCCCEEEE
Confidence            3222222   223456677889999988886

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.95  E-value=1.2e-25  Score=236.01  Aligned_cols=237  Identities=14%  Similarity=0.148  Sum_probs=192.4

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ...++++.++..|++++.|++|++||..++    .+..|...|.+++|++++++|++|+.|++|+|||+.+++++..+.+
T Consensus        16 V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~   95 (304)
T 2ynn_A           16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA   95 (304)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             eEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeC
Confidence            667888899999999999999999999886    4668999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE-EEee-cCCCCeEEEEEcC-CCCEEEEEECCc-EEEEEcCCCc
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSR-DFYRPIASIAFHA-SGELLAVASGHK-LYIWRYNMRE  223 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~-i~~l-~h~~~VtsVafSP-dG~~LAsgSdd~-V~VWDl~t~~  223 (767)
                      |...|.+++|+| ++++|++|+.|++|++||++++.. ...+ .|...|.+++|+| ++.+|++|+.|+ |++||+++..
T Consensus        96 h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~  174 (304)
T 2ynn_A           96 HPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST  174 (304)
T ss_dssp             CSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS
T ss_pred             CCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence            999999999999 899999999999999999998744 4444 5889999999999 678999999666 9999998776


Q ss_pred             cccCCeEEecCCCCeEEEEEcc--CCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCcee
Q 004217          224 ETSSPRIVLRTRRSLRAVHFHP--HAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLA  296 (767)
Q Consensus       224 ~~~~~~~l~~h~~~VtsVaFSP--DG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~  296 (767)
                      ...  .....|...|..+.|+|  ++.+|++++.     +||++....   +.+..+|                      
T Consensus       175 ~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~---~~~~~~h----------------------  227 (304)
T 2ynn_A          175 PNF--TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC---VATLEGH----------------------  227 (304)
T ss_dssp             CSE--EEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE---EEEEECC----------------------
T ss_pred             ccc--eeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc---ceeeCCC----------------------
Confidence            432  23445678899999987  6666666554     666664332   2222233                      


Q ss_pred             eccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217          297 EEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS  359 (767)
Q Consensus       297 sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~  359 (767)
                            ..++....|+|++..|+..                 +....+.+||..+++....+.
T Consensus       228 ------~~~v~~~~~~p~~~~l~s~-----------------s~Dg~i~iWd~~~~~~~~~~~  267 (304)
T 2ynn_A          228 ------MSNVSFAVFHPTLPIIISG-----------------SEDGTLKIWNSSTYKVEKTLN  267 (304)
T ss_dssp             ------SSCEEEEEECSSSSEEEEE-----------------ETTSCEEEEETTTCCEEEEEC
T ss_pred             ------CCCEEEEEECCCCCEEEEE-----------------cCCCeEEEEECCCCceeeecc
Confidence                  2234467899999988762                 233458899999988887774

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.95  E-value=3.6e-25  Score=230.87  Aligned_cols=243  Identities=20%  Similarity=0.264  Sum_probs=195.0

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ...+++..++..|++++.|+.|++|+...+    .+.+|...|.+++|+|++++|++++.|+.|++||+++++++..+.+
T Consensus        26 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  105 (312)
T 4ery_A           26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG  105 (312)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcC
Confidence            566778889999999999999999999876    3679999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccc
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET  225 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~  225 (767)
                      |...|.+++|+| ++++|++++.|++|++||+++++++..+. |...|.+++|+|++++|++++.++ |++||+++++..
T Consensus       106 ~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~  184 (312)
T 4ery_A          106 HSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL  184 (312)
T ss_dssp             CSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Confidence            999999999999 89999999999999999999999888765 788999999999999999999666 999999988754


Q ss_pred             cCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCc-----------------cCCCCeEE
Q 004217          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYW-----------------RYPPPVIC  283 (767)
Q Consensus       226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~-----------------~~p~~~v~  283 (767)
                      .  .....+...+..++|+|+++++++++.     +||++..+....+....+..                 ......+.
T Consensus       185 ~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~  262 (312)
T 4ery_A          185 K--TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY  262 (312)
T ss_dssp             E--EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEE
T ss_pred             e--EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEE
Confidence            4  223456778999999999998887664     88887655433332221110                 00123456


Q ss_pred             EecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEE
Q 004217          284 MAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (767)
Q Consensus       284 l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva  320 (767)
                      +|+..........   .....+++..+|+|++..++.
T Consensus       263 vwd~~~~~~~~~~---~~h~~~v~~~~~~p~~~~l~s  296 (312)
T 4ery_A          263 IWNLQTKEIVQKL---QGHTDVVISTACHPTENIIAS  296 (312)
T ss_dssp             EEETTTCCEEEEE---CCCSSCEEEEEECSSSSEEEE
T ss_pred             EEECCCchhhhhh---hccCCcEEEEeecCcCCceEE
Confidence            6665444322222   234456677889999888876

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.95  E-value=9.5e-25  Score=269.21  Aligned_cols=194  Identities=20%  Similarity=0.305  Sum_probs=160.0

Q ss_pred             cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217           70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L  145 (767)
                      .....++++.++..+++++.|++|++||..++    .+.+|...|.+++|+||+++|++++.|++|+|||+.+++.+..+
T Consensus       616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~  695 (1249)
T 3sfz_A          616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY  695 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence            34677889999999999999999999999887    46799999999999999999999999999999999999999999


Q ss_pred             ccCCCCcEEEEEccC-CCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCC
Q 004217          146 HGHRRTPWVVRFHPL-NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMR  222 (767)
Q Consensus       146 ~gH~~~V~sLafsP~-dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~  222 (767)
                      .+|...|.+++|+|. +..++++|+.|++|++||+.+++++..+ .|...|.+++|+|++++|++++.++ |++||++++
T Consensus       696 ~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~  775 (1249)
T 3sfz_A          696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA  775 (1249)
T ss_dssp             ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGT
T ss_pred             cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCC
Confidence            999999999999984 3458999999999999999999988875 5889999999999999999999766 999999877


Q ss_pred             ccccCCe----------EEecCCCCeEEEEEccCCCeEEEEEe----eCCcCCCC
Q 004217          223 EETSSPR----------IVLRTRRSLRAVHFHPHAAPLLLTAE----VNDLDSSE  263 (767)
Q Consensus       223 ~~~~~~~----------~l~~h~~~VtsVaFSPDG~~LlaSgs----vwdl~s~~  263 (767)
                      +......          ....+...+.+++|+|+|+.+++++.    +|++....
T Consensus       776 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~  830 (1249)
T 3sfz_A          776 NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG  830 (1249)
T ss_dssp             EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCC
T ss_pred             cccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCC
Confidence            5432100          00111235666777777776655543    55555443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.95  E-value=1e-25  Score=240.98  Aligned_cols=187  Identities=22%  Similarity=0.266  Sum_probs=161.7

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC--eEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--SCL  142 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~-------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg--~~l  142 (767)
                      ...++++.++..|++++.|++|++|+.....       ..+|...|.+++|+|++++|++|+.|++|+|||+.++  +++
T Consensus        19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~   98 (345)
T 3fm0_A           19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECV   98 (345)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEE
Confidence            5567888999999999999999999997652       3689999999999999999999999999999999876  467


Q ss_pred             EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe---EEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEE
Q 004217          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE---CIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIW  217 (767)
Q Consensus       143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~---~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VW  217 (767)
                      ..+.+|...|.+++|+| ++++|++|+.|++|++||++++.   ++..+ .|...|.+++|+|++++|++++.|+ |++|
T Consensus        99 ~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w  177 (345)
T 3fm0_A           99 TTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY  177 (345)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEE
T ss_pred             EEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEE
Confidence            88999999999999999 99999999999999999998764   33333 4888999999999999999999766 9999


Q ss_pred             EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcC
Q 004217          218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLD  260 (767)
Q Consensus       218 Dl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~  260 (767)
                      |+++.+... ...+.+|...|++++|+|+|++|++++.     +|+..
T Consensus       178 ~~~~~~~~~-~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          178 REEEDDWVC-CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             EEETTEEEE-EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             EecCCCEEE-EEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence            998765322 2357789999999999999998777665     67653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.95  E-value=4.6e-25  Score=235.06  Aligned_cols=177  Identities=17%  Similarity=0.204  Sum_probs=153.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217           80 ARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~-----------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH  148 (767)
                      ++..|++++.|++|++||+...           .+.+|...|.+++|+|++++|++|+.|++|+|||+++++.+..+.+|
T Consensus        38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h  117 (343)
T 2xzm_R           38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH  117 (343)
T ss_dssp             CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC
T ss_pred             CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence            7889999999999999998642           36799999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee---cCCCCeEEEEEcCCC----------CEEEEEECCc-E
Q 004217          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR---DFYRPIASIAFHASG----------ELLAVASGHK-L  214 (767)
Q Consensus       149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l---~h~~~VtsVafSPdG----------~~LAsgSdd~-V  214 (767)
                      ...|.+++|+| ++++|++++.|++|++||+.........   .|...|.+++|+|++          .+|++++.|+ |
T Consensus       118 ~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i  196 (343)
T 2xzm_R          118 QSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL  196 (343)
T ss_dssp             CSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEE
T ss_pred             CCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEE
Confidence            99999999999 8999999999999999999854443333   478899999999987          7899999666 9


Q ss_pred             EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004217          215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (767)
Q Consensus       215 ~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s  261 (767)
                      ++||.. .+.   ...+.+|...|++++|+|+|++|++++.     +||+..
T Consensus       197 ~iwd~~-~~~---~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          197 KVWNTN-FQI---RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             EEEETT-TEE---EEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred             EEEcCC-Cce---eEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            999943 222   2357789999999999999998877664     888843

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.94  E-value=5.8e-25  Score=234.35  Aligned_cols=242  Identities=14%  Similarity=0.139  Sum_probs=191.4

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC----eEE
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG----SCL  142 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg----~~l  142 (767)
                      ....++++.++..|++++.|++|++||..++    .+..|...|.+++|+|++++|++|+.|+.|++||+.++    +..
T Consensus        57 ~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~  136 (340)
T 1got_B           57 KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS  136 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeE
Confidence            3566778889999999999999999999876    35689999999999999999999999999999999875    456


Q ss_pred             EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcC
Q 004217          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYN  220 (767)
Q Consensus       143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~  220 (767)
                      ..+.+|.+.|.++.|++ ++ .+++++.|++|++||+++++++..+. |...|.+++|+|++++|++|+.|+ |++||++
T Consensus       137 ~~~~~h~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~  214 (340)
T 1got_B          137 RELAGHTGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR  214 (340)
T ss_dssp             EEEECCSSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEecCCCccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            77899999999999998 54 58999999999999999999988865 889999999999999999999666 9999999


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCcc-----------------CC
Q 004217          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR-----------------YP  278 (767)
Q Consensus       221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~-----------------~p  278 (767)
                      ++....   .+.+|...|++++|+|++++|++++.     +||++.......+. ..++..                 ..
T Consensus       215 ~~~~~~---~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~g~~  290 (340)
T 1got_B          215 EGMCRQ---TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYD  290 (340)
T ss_dssp             TCSEEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             CCeeEE---EEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc-cCCcccceEEEEECCCCCEEEEECC
Confidence            887644   67789999999999999998777664     88887544332221 111100                 01


Q ss_pred             CCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEe
Q 004217          279 PPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (767)
Q Consensus       279 ~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~  321 (767)
                      ...+.+|+...........   ....++...+|+||+..|+..
T Consensus       291 d~~i~vwd~~~~~~~~~~~---~h~~~v~~~~~s~dg~~l~s~  330 (340)
T 1got_B          291 DFNCNVWDALKADRAGVLA---GHDNRVSCLGVTDDGMAVATG  330 (340)
T ss_dssp             TSEEEEEETTTCCEEEEEE---CCSSCEEEEEECTTSSCEEEE
T ss_pred             CCeEEEEEcccCcEeeEee---cCCCcEEEEEEcCCCCEEEEE
Confidence            2345556544433322222   244567778899999888863

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.94  E-value=3.7e-25  Score=242.83  Aligned_cols=241  Identities=21%  Similarity=0.244  Sum_probs=195.4

Q ss_pred             ceeeccccccee----c-CCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEE
Q 004217           55 SKRLLGETARKC----S-GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLAST  125 (767)
Q Consensus        55 sk~~wd~~~~~~----~-~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASg  125 (767)
                      ..++|+.....+    . .......+++..++..|++++.|++|++||..+.    .+.+|...|.+++|+|++++|++|
T Consensus       131 ~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~  210 (410)
T 1vyh_C          131 TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA  210 (410)
T ss_dssp             CEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEE
T ss_pred             eEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence            456676443221    1 2234677888889999999999999999999875    478999999999999999999999


Q ss_pred             eCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCC--
Q 004217          126 HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHAS--  202 (767)
Q Consensus       126 s~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPd--  202 (767)
                      +.|++|++||+.+++++..+.+|...|.++.|+| ++.+|++|+.|++|++||++++++...+ .|...|.+++|+|+  
T Consensus       211 s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  289 (410)
T 1vyh_C          211 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESS  289 (410)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCG
T ss_pred             eCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCccc
Confidence            9999999999999999999999999999999999 9999999999999999999999988876 58899999999996  


Q ss_pred             ------------------CCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCC
Q 004217          203 ------------------GELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VND  258 (767)
Q Consensus       203 ------------------G~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwd  258 (767)
                                        |.+|++|+.|+ |++||++++..+.   .+.+|...|++++|+|+|++|++++.     +||
T Consensus       290 ~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd  366 (410)
T 1vyh_C          290 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM---TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD  366 (410)
T ss_dssp             GGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECSSSSCEEEEETTTEEEEEC
T ss_pred             ccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE---EEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence                              67899999766 9999999987655   67889999999999999998887765     888


Q ss_pred             cCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCce
Q 004217          259 LDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL  307 (767)
Q Consensus       259 l~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil  307 (767)
                      +........+.   +|..   .+..+..  .++...++++..+..+.+|
T Consensus       367 ~~~~~~~~~~~---~h~~---~v~~l~~--~~~~~~l~sgs~D~~i~vW  407 (410)
T 1vyh_C          367 YKNKRCMKTLN---AHEH---FVTSLDF--HKTAPYVVTGSVDQTVKVW  407 (410)
T ss_dssp             CTTSCCCEEEE---CCSS---CEEEEEE--CSSSSCEEEEETTSEEEEE
T ss_pred             CCCCceEEEEc---CCCC---cEEEEEE--cCCCCEEEEEeCCCcEEEE
Confidence            87766555543   4422   2333332  3445566666555444443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.94  E-value=5.9e-25  Score=233.75  Aligned_cols=226  Identities=16%  Similarity=0.164  Sum_probs=188.2

Q ss_pred             cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217           70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L  145 (767)
                      .....+++..++..+++++.|++|++||+.++    .+..|...+.+++|+||+++|++++.|+.|++||+++++....+
T Consensus        81 ~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~  160 (321)
T 3ow8_A           81 LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL  160 (321)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe
Confidence            34667778888999999999999999999886    35678889999999999999999999999999999999999999


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCc
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMRE  223 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~  223 (767)
                      ..|...|.+++|+| ++++|++|+.|++|++||+++++.+..+. |...|.+++|+|++++|++++.|+ |++||+++.+
T Consensus       161 ~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~  239 (321)
T 3ow8_A          161 DTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN  239 (321)
T ss_dssp             ECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred             cCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence            99999999999999 99999999999999999999999988875 888999999999999999999766 9999999887


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeec
Q 004217          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEE  298 (767)
Q Consensus       224 ~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg  298 (767)
                      ...   .+.+|...|.+++|+|++++|++++.     +||+.....   +.+..+|..   .+..+..  +++...++++
T Consensus       240 ~~~---~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~---~~~~~~h~~---~v~~v~~--s~~g~~l~s~  308 (321)
T 3ow8_A          240 LAG---TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC---VHTFFDHQD---QVWGVKY--NGNGSKIVSV  308 (321)
T ss_dssp             EEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---EEEECCCSS---CEEEEEE--CTTSSEEEEE
T ss_pred             eeE---EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE---EEEEcCCCC---cEEEEEE--CCCCCEEEEE
Confidence            644   67889999999999999998777665     888876554   344445532   2333322  3455566666


Q ss_pred             cCCCCCCce
Q 004217          299 VPLITPPFL  307 (767)
Q Consensus       299 ~~~~slpil  307 (767)
                      ..+..+.+|
T Consensus       309 ~~d~~i~vw  317 (321)
T 3ow8_A          309 GDDQEIHIY  317 (321)
T ss_dssp             ETTCCEEEE
T ss_pred             eCCCeEEEE
Confidence            555444444

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.94  E-value=3.3e-23  Score=233.13  Aligned_cols=179  Identities=27%  Similarity=0.347  Sum_probs=158.3

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ...+++++.+++.|++++.|++|++||....   .+.+|...|++++|+||+++|++++.|++|+|||+ +++++..+.+
T Consensus        18 ~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~   96 (577)
T 2ymu_A           18 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG   96 (577)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECC
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEEC
Confidence            3667889999999999999999999997543   47799999999999999999999999999999995 5788999999


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCcccc
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETS  226 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~  226 (767)
                      |...|.+++|+| ++++|++++.|+.+++|+...........+...+..+.|+|+++.++.++.+. +++|+......  
T Consensus        97 ~~~~v~~~~~s~-d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  173 (577)
T 2ymu_A           97 HSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL--  173 (577)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEE--
T ss_pred             CCCCEEEEEECC-CCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeee--
Confidence            999999999999 99999999999999999998877776677889999999999999999998766 88888654432  


Q ss_pred             CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       227 ~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                        .....|...|..+.|+|+++++++++.
T Consensus       174 --~~~~~~~~~v~~~~~~~~~~~l~~~~~  200 (577)
T 2ymu_A          174 --QTLTGHSSSVWGVAFSPDGQTIASASD  200 (577)
T ss_dssp             --EEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred             --eeccCCCcceeeeeecCCCCEEEEEcC
Confidence              346778999999999999998877664

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.94  E-value=9.8e-25  Score=228.98  Aligned_cols=189  Identities=16%  Similarity=0.224  Sum_probs=164.1

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC-eEEEEE
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG-SCLKVL  145 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg-~~l~~L  145 (767)
                      ....+.+..++..|++++.|++|++||..++    .+.+|...|.+++|+|++++|++|+.|++|+|||++++ .....+
T Consensus        57 ~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~  136 (304)
T 2ynn_A           57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF  136 (304)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred             cEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh
Confidence            3567778889999999999999999999887    36799999999999999999999999999999999887 556788


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee--cCCCCeEEEEEcC--CCCEEEEEECCc-EEEEEcC
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFHA--SGELLAVASGHK-LYIWRYN  220 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l--~h~~~VtsVafSP--dG~~LAsgSdd~-V~VWDl~  220 (767)
                      .+|...|.+++|+|.++.+|++|+.|++|++||++++.....+  .+...+..++|+|  ++++|++++.|+ |++||++
T Consensus       137 ~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~  216 (304)
T 2ynn_A          137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ  216 (304)
T ss_dssp             CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT
T ss_pred             cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC
Confidence            9999999999999967889999999999999999887765543  4667899999987  678999999766 9999999


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCC
Q 004217          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS  262 (767)
Q Consensus       221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~  262 (767)
                      +++.+.   .+.+|...|.+++|+|++++|++++.     +||+...
T Consensus       217 ~~~~~~---~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~  260 (304)
T 2ynn_A          217 TKSCVA---TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY  260 (304)
T ss_dssp             TTEEEE---EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             CCccce---eeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            987655   77899999999999999997776654     5665543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.94  E-value=3.7e-25  Score=238.93  Aligned_cols=181  Identities=15%  Similarity=0.138  Sum_probs=157.8

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCC-eEEEEeCCCeEEEEECCCCeEEEEE
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~-~LASgs~DGtVrVWDl~tg~~l~~L  145 (767)
                      ....++++.++..|++++.|++|++||+.++    .+.+|...|.+++|++++. +|++|+.|++|+|||+++++....+
T Consensus       129 ~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  208 (344)
T 4gqb_B          129 IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI  208 (344)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeee
Confidence            4677888899999999999999999999887    4779999999999999875 7899999999999999999988877


Q ss_pred             c--cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCC-CEEEEEECCc-EEEEEcC
Q 004217          146 H--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASG-ELLAVASGHK-LYIWRYN  220 (767)
Q Consensus       146 ~--gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG-~~LAsgSdd~-V~VWDl~  220 (767)
                      .  .|...+.+++|+|.++++|++|+.|++|++||+++++++..+. |...|++++|+|+| ++|++|+.|+ |+|||++
T Consensus       209 ~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~  288 (344)
T 4gqb_B          209 GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSS  288 (344)
T ss_dssp             C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred             ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence            4  4566789999999778899999999999999999999888764 88999999999998 5899999766 9999999


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +++..    .+.+|.+.|++++|+|+++.++++++
T Consensus       289 ~~~~~----~~~~H~~~V~~v~~sp~~~~llas~s  319 (344)
T 4gqb_B          289 LSELF----RSQAHRDFVRDATWSPLNHSLLTTVG  319 (344)
T ss_dssp             CCEEE----EECCCSSCEEEEEECSSSTTEEEEEE
T ss_pred             CCcEE----EEcCCCCCEEEEEEeCCCCeEEEEEc
Confidence            88643    46789999999999999998887765

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.94  E-value=4.6e-24  Score=223.15  Aligned_cols=182  Identities=15%  Similarity=0.138  Sum_probs=151.9

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC--CCCeEEEEeCCCeEEEEECCCCe--E
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGS--C  141 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSp--DG~~LASgs~DGtVrVWDl~tg~--~  141 (767)
                      ...++++.+++.|++++.|++|++|++...      .+.+|.+.|.+++|++  ++++|++|+.|++|+|||+++++  .
T Consensus        12 V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~   91 (297)
T 2pm7_B           12 IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ   91 (297)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCC
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEE
Confidence            556778889999999999999999998642      4679999999999987  48999999999999999999874  5


Q ss_pred             EEEEccCCCCcEEEEEccCC--CcEEEEEeCCCeEEEEECCCCeE---EEeecCCCCeEEEEEcCC-------------C
Q 004217          142 LKVLHGHRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTAEC---IGSRDFYRPIASIAFHAS-------------G  203 (767)
Q Consensus       142 l~~L~gH~~~V~sLafsP~d--g~lLaSgS~DGtVrIWDl~tg~~---i~~l~h~~~VtsVafSPd-------------G  203 (767)
                      +..+.+|...|.+++|+| +  +.+|++++.|++|++||++++..   .....|...|.+++|+|+             +
T Consensus        92 ~~~~~~h~~~v~~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~  170 (297)
T 2pm7_B           92 IAVHAVHSASVNSVQWAP-HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES  170 (297)
T ss_dssp             CEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------C
T ss_pred             EEEeecCCCceeEEEeCc-CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCc
Confidence            677889999999999999 5  78999999999999999987632   223468899999999997             5


Q ss_pred             CEEEEEECCc-EEEEEcCCCcccc-CCeEEecCCCCeEEEEEccCC---CeEEEEE
Q 004217          204 ELLAVASGHK-LYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHA---APLLLTA  254 (767)
Q Consensus       204 ~~LAsgSdd~-V~VWDl~t~~~~~-~~~~l~~h~~~VtsVaFSPDG---~~LlaSg  254 (767)
                      ++|++|+.|+ |++||+++.+... ....+.+|...|++++|+|++   .+|++++
T Consensus       171 ~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s  226 (297)
T 2pm7_B          171 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS  226 (297)
T ss_dssp             CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE
Confidence            7999999666 9999998765211 123567899999999999996   5454444

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.94  E-value=1.4e-24  Score=239.15  Aligned_cols=197  Identities=17%  Similarity=0.134  Sum_probs=161.9

Q ss_pred             ceEEEEEEc-CCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEE
Q 004217           71 SQIFEAGRD-ARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCL  142 (767)
Q Consensus        71 s~~~vA~sd-~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l  142 (767)
                      .+.++++.. ++..|++|+.||.|++||+.++      ++.+|.+.|++|+|+| ++++|++|+.|++|+|||++++...
T Consensus       121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~  200 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR  200 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee
Confidence            367788875 6778999999999999999765      3568999999999998 7899999999999999999877644


Q ss_pred             EEEccC--CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCC-EEEEEECCc-EEEEE
Q 004217          143 KVLHGH--RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGE-LLAVASGHK-LYIWR  218 (767)
Q Consensus       143 ~~L~gH--~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~-~LAsgSdd~-V~VWD  218 (767)
                      .....|  ...+.+++|+| ++++|++|+.||+|++||++.........|...|.+++|+|++. +|++++.|+ |+|||
T Consensus       201 ~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd  279 (435)
T 4e54_B          201 VFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD  279 (435)
T ss_dssp             EEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEE
T ss_pred             EEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEe
Confidence            444333  34578999999 99999999999999999997654444456899999999999986 788888665 99999


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004217          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL  268 (767)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l  268 (767)
                      +++.+.........+|...|++++|+|||++|++++.     +|++..++....+
T Consensus       280 ~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~  334 (435)
T 4e54_B          280 LRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL  334 (435)
T ss_dssp             TTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred             cccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE
Confidence            9987765544455689999999999999998887765     8888877665444

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.94  E-value=1.2e-24  Score=234.82  Aligned_cols=180  Identities=14%  Similarity=0.117  Sum_probs=150.4

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC--------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP--------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK  143 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~--------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~  143 (767)
                      ...+++..++. +++++.|++|++||+.+++        ..+|...|++++|+||+++|++|+.|++|+|||+++++++.
T Consensus        97 V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~  175 (357)
T 4g56_B           97 VTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK  175 (357)
T ss_dssp             EEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            56677777664 5567889999999997752        33899999999999999999999999999999999999999


Q ss_pred             EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee---cCCCCeEEEEEcCCC-CEEEEEECCc-EEEEE
Q 004217          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR---DFYRPIASIAFHASG-ELLAVASGHK-LYIWR  218 (767)
Q Consensus       144 ~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l---~h~~~VtsVafSPdG-~~LAsgSdd~-V~VWD  218 (767)
                      .+.+|...|.+++|+|.+..++++++.|++|++||++++++...+   .+...+.+++|+|++ .+|++|+.++ |++||
T Consensus       176 ~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd  255 (357)
T 4g56_B          176 SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVN  255 (357)
T ss_dssp             EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEE
T ss_pred             EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEE
Confidence            999999999999999955568999999999999999998877664   356789999999985 6888888665 99999


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +++++...   .+..|...|++++|+|++..++++++
T Consensus       256 ~~~~~~~~---~~~~~~~~v~~l~~sp~~~~~lasgs  289 (357)
T 4g56_B          256 IKNPDSAQ---TSAVHSQNITGLAYSYHSSPFLASIS  289 (357)
T ss_dssp             SSCGGGCE---EECCCSSCEEEEEECSSSSCCEEEEE
T ss_pred             CCCCcEeE---EEeccceeEEEEEEcCCCCCEEEEEe
Confidence            99887654   77889999999999999865555544

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.94  E-value=2.5e-24  Score=234.32  Aligned_cols=251  Identities=20%  Similarity=0.242  Sum_probs=190.0

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCC------------------CCeEEEEECCCCCeEEEEeCC
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPP------------------RSTIAAAFSPDGKTLASTHGD  128 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~------------------~sVtsVaFSpDG~~LASgs~D  128 (767)
                      ...+++++.++..|++++ ++.+++|+..+++    +..|.                  ..|.+++|+|||++|++|+.|
T Consensus        66 ~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d  144 (393)
T 1erj_A           66 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED  144 (393)
T ss_dssp             CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCC
Confidence            356788889999999986 7899999998763    33332                  249999999999999999999


Q ss_pred             CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcC-CCCEEE
Q 004217          129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHA-SGELLA  207 (767)
Q Consensus       129 GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSP-dG~~LA  207 (767)
                      ++|+|||+.+++.+..+.+|...|.+++|+| ++++|++++.|++|++||++++++...+.+...+.+++|+| ++++|+
T Consensus       145 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  223 (393)
T 1erj_A          145 RLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA  223 (393)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEE
T ss_pred             CeEEEEECCCCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEE
Confidence            9999999999999999999999999999999 89999999999999999999999998888889999999999 899999


Q ss_pred             EEECCc-EEEEEcCCCccccCC----eEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccC
Q 004217          208 VASGHK-LYIWRYNMREETSSP----RIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRY  277 (767)
Q Consensus       208 sgSdd~-V~VWDl~t~~~~~~~----~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~  277 (767)
                      +++.++ |++||+++++.....    ....+|...|++++|+|+|++|++++.     +||++..........       
T Consensus       224 ~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~-------  296 (393)
T 1erj_A          224 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT-------  296 (393)
T ss_dssp             EEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------------
T ss_pred             EEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccC-------
Confidence            999766 999999987654311    112578999999999999998777654     677664322111000       


Q ss_pred             CCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeee
Q 004217          278 PPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELV  357 (767)
Q Consensus       278 p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~  357 (767)
                      +..         ........   .....+...+|++++.+|+..                 +....+.+||..+++....
T Consensus       297 ~~~---------~~~~~~~~---~h~~~v~~~~~~~~~~~l~sg-----------------s~D~~v~iwd~~~~~~~~~  347 (393)
T 1erj_A          297 PNS---------GTCEVTYI---GHKDFVLSVATTQNDEYILSG-----------------SKDRGVLFWDKKSGNPLLM  347 (393)
T ss_dssp             -------------CEEEEEE---CCSSCEEEEEECGGGCEEEEE-----------------ETTSEEEEEETTTCCEEEE
T ss_pred             CCC---------CcceEEEe---cccCcEEEEEECCCCCEEEEE-----------------eCCCeEEEEECCCCeEEEE
Confidence            000         00000011   122345678999999988862                 2334688999988887766


Q ss_pred             ec
Q 004217          358 LS  359 (767)
Q Consensus       358 ~~  359 (767)
                      +.
T Consensus       348 l~  349 (393)
T 1erj_A          348 LQ  349 (393)
T ss_dssp             EE
T ss_pred             EC
Confidence            63

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.93  E-value=2.6e-24  Score=229.34  Aligned_cols=224  Identities=17%  Similarity=0.169  Sum_probs=182.4

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL  142 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~--------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l  142 (767)
                      ....+++..++..|++++.|+.|++|++.+.        .+.+|.+.|.++.|++++. |++++.|++|++||+++++.+
T Consensus        99 ~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~  177 (340)
T 1got_B           99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQT  177 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEE
Confidence            3667788899999999999999999998764        2568999999999998775 889999999999999999999


Q ss_pred             EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcC
Q 004217          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYN  220 (767)
Q Consensus       143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~  220 (767)
                      ..+.+|...|.+++|+| ++++|++|+.|++|++||+++++++..+. |...|.+++|+|++++|++++.|+ |++||++
T Consensus       178 ~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~  256 (340)
T 1got_B          178 TTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR  256 (340)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence            99999999999999999 89999999999999999999999888865 889999999999999999999766 9999999


Q ss_pred             CCccccCCeEEe--cCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCC
Q 004217          221 MREETSSPRIVL--RTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHP  293 (767)
Q Consensus       221 t~~~~~~~~~l~--~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~  293 (767)
                      +.+...   .+.  .+...|.+++|+|+|++|++++.     +||+...+...   ...+|..   ++.++..  +++..
T Consensus       257 ~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~---~~~~h~~---~v~~~~~--s~dg~  325 (340)
T 1got_B          257 ADQELM---TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG---VLAGHDN---RVSCLGV--TDDGM  325 (340)
T ss_dssp             TTEEEE---EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSS---CEEEEEE--CTTSS
T ss_pred             CCcEEE---EEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEee---EeecCCC---cEEEEEE--cCCCC
Confidence            876543   222  23457999999999998777664     78887655443   3445532   3334433  45666


Q ss_pred             ceeeccCCCCCCce
Q 004217          294 GLAEEVPLITPPFL  307 (767)
Q Consensus       294 ~L~sg~~~~slpil  307 (767)
                      .++++..+..+.+|
T Consensus       326 ~l~s~s~D~~i~iW  339 (340)
T 1got_B          326 AVATGSWDSFLKIW  339 (340)
T ss_dssp             CEEEEETTSCEEEE
T ss_pred             EEEEEcCCccEEec
Confidence            77777555444433

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.93  E-value=4.4e-24  Score=229.77  Aligned_cols=245  Identities=12%  Similarity=0.126  Sum_probs=192.1

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC------e
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG------S  140 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg------~  140 (767)
                      ...+++++.++..|++++.|++|++||..+.    .+..|...|.+++|+|+|++|++|+.|+.+++|++...      .
T Consensus        66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~  145 (354)
T 2pbi_B           66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAA  145 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGG
T ss_pred             eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccc
Confidence            4677888899999999999999999998776    35578889999999999999999999999999998643      3


Q ss_pred             EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcC--CCCEEEEEECCc-EEE
Q 004217          141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHA--SGELLAVASGHK-LYI  216 (767)
Q Consensus       141 ~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSP--dG~~LAsgSdd~-V~V  216 (767)
                      ....+.+|...|.+++|+| ++..|++++.|++|++||+++++++..+ .|...|.+++|+|  +|++|++|+.|+ |++
T Consensus       146 ~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~  224 (354)
T 2pbi_B          146 KKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV  224 (354)
T ss_dssp             GCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEE
T ss_pred             cceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEE
Confidence            4567788999999999999 8899999999999999999999998886 4889999999987  578999999666 999


Q ss_pred             EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecC-------------CCc---
Q 004217          217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSP-------------GYW---  275 (767)
Q Consensus       217 WDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~s-------------G~~---  275 (767)
                      ||+++++...   .+..|...|++++|+|++.+|++++.     +||++.......+....             |..   
T Consensus       225 wd~~~~~~~~---~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~  301 (354)
T 2pbi_B          225 WDMRSGQCVQ---AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA  301 (354)
T ss_dssp             EETTTCCEEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred             EECCCCcEEE---EecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence            9999987654   67789999999999999997777654     78877543322221110             000   


Q ss_pred             cCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEee
Q 004217          276 RYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQH  322 (767)
Q Consensus       276 ~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~  322 (767)
                      ......+.+|+...+......   .....++...+|+||+..++...
T Consensus       302 g~~d~~i~vwd~~~~~~~~~l---~~h~~~v~~l~~spdg~~l~sgs  345 (354)
T 2pbi_B          302 GYNDYTINVWDVLKGSRVSIL---FGHENRVSTLRVSPDGTAFCSGS  345 (354)
T ss_dssp             EETTSCEEEEETTTCSEEEEE---CCCSSCEEEEEECTTSSCEEEEE
T ss_pred             EECCCcEEEEECCCCceEEEE---ECCCCcEEEEEECCCCCEEEEEc
Confidence            011234666665444322222   23455677899999999988733

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.93  E-value=8.5e-25  Score=236.94  Aligned_cols=248  Identities=13%  Similarity=0.158  Sum_probs=190.9

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe------
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS------  140 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~------  140 (767)
                      ....++++.++..|++++.|++|++||..++    .+..|...|.+++|+|+|++|++|+.|+.|+|||+.+..      
T Consensus        68 ~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~  147 (380)
T 3iz6_a           68 KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNM  147 (380)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSS
T ss_pred             EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCc
Confidence            4677888899999999999999999999876    467899999999999999999999999999999987532      


Q ss_pred             -EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee------cCCCCeEEEEEcC-CCCEEEEEECC
Q 004217          141 -CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR------DFYRPIASIAFHA-SGELLAVASGH  212 (767)
Q Consensus       141 -~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l------~h~~~VtsVafSP-dG~~LAsgSdd  212 (767)
                       ....+.+|.+.|.++.|+|.++..|++|+.|++|++||+.+++++..+      .|...|.+++|++ ++++|++|+.|
T Consensus       148 ~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D  227 (380)
T 3iz6_a          148 PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD  227 (380)
T ss_dssp             TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT
T ss_pred             cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC
Confidence             345678999999999999966778999999999999999999988765      3778899999987 78999999976


Q ss_pred             c-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCc-----------
Q 004217          213 K-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYW-----------  275 (767)
Q Consensus       213 ~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~-----------  275 (767)
                      + |++||++....  ....+.+|...|++++|+|++++|++++.     +||++.+.....+.......           
T Consensus       228 ~~v~~wd~~~~~~--~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  305 (380)
T 3iz6_a          228 TTVRLWDLRITSR--AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVA  305 (380)
T ss_dssp             SCEEEEETTTTCC--CCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEE
T ss_pred             CeEEEEECCCCCc--ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEE
Confidence            6 99999985432  23467889999999999999998777654     88888655443332211110           


Q ss_pred             ----------cCCCCeEEEecCCCCCCCceeec-cCCCCCCceeeEEecCCCEEEE
Q 004217          276 ----------RYPPPVICMAGAHSSSHPGLAEE-VPLITPPFLRPSFVRDDERISL  320 (767)
Q Consensus       276 ----------~~p~~~v~l~~~~Ssd~~~L~sg-~~~~slpil~psFSpDg~rIva  320 (767)
                                ......+.+|+...+........ ......++...+|+||+..++.
T Consensus       306 ~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s  361 (380)
T 3iz6_a          306 FSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCT  361 (380)
T ss_dssp             ECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEE
T ss_pred             ECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEE
Confidence                      01123455555433322211111 1234456678899999999887

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.2e-23  Score=223.60  Aligned_cols=186  Identities=19%  Similarity=0.226  Sum_probs=148.0

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC------C-CC-CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC-----
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP------L-SP-PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-----  138 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~------L-~g-H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t-----  138 (767)
                      ...+++..+  .|++++.|++|++|++..+.      + .+ |...|.+++|+|++++|++|+.|++|+|||++.     
T Consensus        17 v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~   94 (330)
T 2hes_X           17 IWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT   94 (330)
T ss_dssp             EEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------
T ss_pred             eeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcc
Confidence            344555444  99999999999999998642      2 34 999999999999999999999999999999853     


Q ss_pred             --CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC----eEEEee-cCCCCeEEEEEcCCCCEEEEEEC
Q 004217          139 --GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA----ECIGSR-DFYRPIASIAFHASGELLAVASG  211 (767)
Q Consensus       139 --g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg----~~i~~l-~h~~~VtsVafSPdG~~LAsgSd  211 (767)
                        .+.+..+.+|...|.+++|+| ++++|++|+.|++|++||++..    +++..+ .|...|.+++|+|++++|++++.
T Consensus        95 ~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~  173 (330)
T 2hes_X           95 FEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY  173 (330)
T ss_dssp             CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred             ccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC
Confidence              456788999999999999999 8999999999999999999532    455554 48899999999999999999997


Q ss_pred             Cc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccC--CCeEEEEEe-----eCCcCC
Q 004217          212 HK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH--AAPLLLTAE-----VNDLDS  261 (767)
Q Consensus       212 d~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPD--G~~LlaSgs-----vwdl~s  261 (767)
                      |+ |++||..+.... ....+.+|...|.+++|+|+  +.+|++++.     +|++..
T Consensus       174 D~~i~iW~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          174 DDTVRIWKDYDDDWE-CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             TSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             CCeEEEEECCCCCee-EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            66 999998766321 12367789999999999999  555555543     677653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.93  E-value=1.1e-23  Score=243.26  Aligned_cols=151  Identities=20%  Similarity=0.300  Sum_probs=134.6

Q ss_pred             eEEEEEEcCCC-EEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217           72 QIFEAGRDARR-GLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        72 ~~~vA~sd~g~-~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~  146 (767)
                      ...+++..++. .|++++.|++|++||....    .+.+|...|.+++|+|||++|++|+.|++|+|||+.+++++..+.
T Consensus       150 v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~  229 (611)
T 1nr0_A          150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE  229 (611)
T ss_dssp             EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB
T ss_pred             ceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeec
Confidence            56677777765 6999999999999998765    478999999999999999999999999999999999999988884


Q ss_pred             -------cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-------------------------------
Q 004217          147 -------GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-------------------------------  188 (767)
Q Consensus       147 -------gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-------------------------------  188 (767)
                             +|.+.|.+++|+| ++++|++++.|++|++||+.+++++..+                               
T Consensus       230 ~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~  308 (611)
T 1nr0_A          230 DDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF  308 (611)
T ss_dssp             CTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEE
T ss_pred             cccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEE
Confidence                   7999999999999 9999999999999999999988765432                               


Q ss_pred             -------------cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCc
Q 004217          189 -------------DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMRE  223 (767)
Q Consensus       189 -------------~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~  223 (767)
                                   .|...|.+++|+|+|++|++++.|+ |++||+.++.
T Consensus       309 ~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~  357 (611)
T 1nr0_A          309 VNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI  357 (611)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             EeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence                         4778899999999999999999666 9999998654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.93  E-value=1.1e-23  Score=227.03  Aligned_cols=190  Identities=19%  Similarity=0.222  Sum_probs=162.1

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ..+.++..++..|++++.|+.|++||+.++    .+.+|...|++++|+|++++|++|+.|++|++||+.+++.+..+.+
T Consensus       100 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  179 (420)
T 3vl1_A          100 TAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG  179 (420)
T ss_dssp             EEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC
T ss_pred             eEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC
Confidence            334456778999999999999999999876    3579999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec----CCCCeE---------------------EEEEcCC
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD----FYRPIA---------------------SIAFHAS  202 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~----h~~~Vt---------------------sVafSPd  202 (767)
                      |...|.+++|+| ++++|++++.|++|++||+++++.+..+.    +...+.                     +++|+|+
T Consensus       180 h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  258 (420)
T 3vl1_A          180 HRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY  258 (420)
T ss_dssp             CSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT
T ss_pred             CCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC
Confidence            999999999999 89999999999999999999999888864    334444                     4555789


Q ss_pred             CCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCC-eEEEEEe-----eCCcCCCCc
Q 004217          203 GELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA-PLLLTAE-----VNDLDSSES  264 (767)
Q Consensus       203 G~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~-~LlaSgs-----vwdl~s~~~  264 (767)
                      |++|++++.++ |++||+++++...  .....|...|++++|+|+++ +|++++.     +||++....
T Consensus       259 ~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          259 GKYVIAGHVSGVITVHNVFSKEQTI--QLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC  325 (420)
T ss_dssp             TEEEEEEETTSCEEEEETTTCCEEE--EECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeE--EcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence            99999999766 9999999887644  23345788999999999999 5555543     888887654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.93  E-value=7.7e-24  Score=224.01  Aligned_cols=185  Identities=18%  Similarity=0.203  Sum_probs=159.9

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~  146 (767)
                      ....+++..++..|++++.|++|++||+.++    .+.+|...|.+++|+|++++|++|+.|++|+|||++ ++++..+.
T Consensus        67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~  145 (319)
T 3frx_A           67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLL  145 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEe
Confidence            3666778889999999999999999999887    467999999999999999999999999999999986 56788899


Q ss_pred             cCCCCcEEEEEccC-----CCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEc
Q 004217          147 GHRRTPWVVRFHPL-----NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRY  219 (767)
Q Consensus       147 gH~~~V~sLafsP~-----dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl  219 (767)
                      +|...|.+++|+|.     ++..+++++.|++|++||+++.+....+ .|...|.+++|+|+|++|++++.|+ |++||+
T Consensus       146 ~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~  225 (319)
T 3frx_A          146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL  225 (319)
T ss_dssp             CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            99999999999983     2348999999999999999999887775 5899999999999999999999766 999999


Q ss_pred             CCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe----eCCcC
Q 004217          220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE----VNDLD  260 (767)
Q Consensus       220 ~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs----vwdl~  260 (767)
                      ++.+.+.   .+ .+...|.+++|+|++.+++++..    +|+++
T Consensus       226 ~~~~~~~---~~-~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~  266 (319)
T 3frx_A          226 AAKKAMY---TL-SAQDEVFSLAFSPNRYWLAAATATGIKVFSLD  266 (319)
T ss_dssp             TTTEEEE---EE-ECCSCEEEEEECSSSSEEEEEETTEEEEEEET
T ss_pred             CCCcEEE---Ee-cCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeC
Confidence            9887644   33 35578999999999997766543    55544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.93  E-value=4.1e-23  Score=221.16  Aligned_cols=246  Identities=12%  Similarity=0.071  Sum_probs=187.5

Q ss_pred             ceEEEEEEcCC-CEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEE
Q 004217           71 SQIFEAGRDAR-RGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCL  142 (767)
Q Consensus        71 s~~~vA~sd~g-~~LaSgs~DgsIrlWd~~t~~------L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l  142 (767)
                      ....+++..++ ..|++++.|+.|++||..+.+      +.+|...|.+++|+| ++++|++++.|+.|++||+.+ +.+
T Consensus        75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~  153 (383)
T 3ei3_B           75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVI  153 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEE
T ss_pred             CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-Cce
Confidence            36677788887 899999999999999998762      347999999999999 789999999999999999986 556


Q ss_pred             EEEccC---CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCC-EEEEEECCc-EEE
Q 004217          143 KVLHGH---RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGE-LLAVASGHK-LYI  216 (767)
Q Consensus       143 ~~L~gH---~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~-~LAsgSdd~-V~V  216 (767)
                      ..+..|   ...|.+++|+| ++++|++++.|+.|++||++ ++.+.. ..|...|.+++|+|+++ +|++++.++ |++
T Consensus       154 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i  231 (383)
T 3ei3_B          154 QVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKL  231 (383)
T ss_dssp             EEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred             EEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEE
Confidence            666544   47899999999 89999999999999999995 555555 45899999999999999 899999766 999


Q ss_pred             EEcCCCccccCCeEEecCCCCeEEEEEcc-CCCeEEEEEe-----eCCcCCCCcceeEeecCCCc---------------
Q 004217          217 WRYNMREETSSPRIVLRTRRSLRAVHFHP-HAAPLLLTAE-----VNDLDSSESSLTLATSPGYW---------------  275 (767)
Q Consensus       217 WDl~t~~~~~~~~~l~~h~~~VtsVaFSP-DG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~---------------  275 (767)
                      ||+++.+.........+|...|++++|+| ++++|++++.     +||++.++....+.......               
T Consensus       232 wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  311 (383)
T 3ei3_B          232 WDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMY  311 (383)
T ss_dssp             EEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSS
T ss_pred             EeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCC
Confidence            99998543222333457999999999999 9998887764     88988777655544322100               


Q ss_pred             -----c---------CCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEE
Q 004217          276 -----R---------YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (767)
Q Consensus       276 -----~---------~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva  320 (767)
                           .         .....+.+|+..++.......+.. ....+...+|+||+..|+.
T Consensus       312 ~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~-~~~~~~~~~~s~~g~~l~s  369 (383)
T 3ei3_B          312 DLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPN-AAGIISLNKFSPTGDVLAS  369 (383)
T ss_dssp             SEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTT-BCSCCCEEEECTTSSEEEE
T ss_pred             CceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCC-CCceEEEEEEecCccEEEE
Confidence                 0         023457777766555433333211 1122225699999998886

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.92  E-value=2.2e-23  Score=226.93  Aligned_cols=193  Identities=21%  Similarity=0.245  Sum_probs=163.5

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ...++++.++..|++++.|+.|++||+.++    .+.+|...|.+++|+|++++|++++.|++|++||++++++...+. 
T Consensus       126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-  204 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-  204 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-
Confidence            557788889999999999999999999876    367999999999999999999999999999999999999888776 


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee--------cCCCCeEEEEEcCCCCEEEEEECCc-EEEEE
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--------DFYRPIASIAFHASGELLAVASGHK-LYIWR  218 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l--------~h~~~VtsVafSPdG~~LAsgSdd~-V~VWD  218 (767)
                      +...+.+++|+|.++++|++|+.|++|++||+++++.+..+        .|...|.+++|+|+|++|++++.|+ |++||
T Consensus       205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd  284 (393)
T 1erj_A          205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN  284 (393)
T ss_dssp             CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            56779999999978899999999999999999999887664        4788999999999999999999666 99999


Q ss_pred             cCCCcccc---------CCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcc
Q 004217          219 YNMREETS---------SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESS  265 (767)
Q Consensus       219 l~t~~~~~---------~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~  265 (767)
                      +++.....         ....+.+|...|.+++|+|++.+|++++.     +||+..+...
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~  345 (393)
T 1erj_A          285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL  345 (393)
T ss_dssp             C---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence            98653211         12356689999999999999998877664     7887765543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.92  E-value=1.2e-23  Score=226.23  Aligned_cols=180  Identities=16%  Similarity=0.219  Sum_probs=161.5

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECC--CCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSp--DG~~LASgs~DGtVrVWDl~tg~~l~~L  145 (767)
                      ...+++..++..|++++.|++|++||+.+++    +.+|...|.+++|+|  ++++|++|+.|++|++||+++++++..+
T Consensus       157 v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~  236 (354)
T 2pbi_B          157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF  236 (354)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            4566777888999999999999999998873    679999999999988  5789999999999999999999999999


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC---CCCeEEEEEcCCCCEEEEEECCc-EEEEEcCC
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF---YRPIASIAFHASGELLAVASGHK-LYIWRYNM  221 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h---~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t  221 (767)
                      .+|...|.+++|+| ++++|++++.|++|++||+++++.+..+..   ...+.+++|+|+|++|++|+.++ |++||+.+
T Consensus       237 ~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~  315 (354)
T 2pbi_B          237 ETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK  315 (354)
T ss_dssp             CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             cCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCC
Confidence            99999999999999 899999999999999999999888776643   34789999999999999999765 99999988


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       222 ~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ++.+.   .+.+|...|++++|+|||++|++++.
T Consensus       316 ~~~~~---~l~~h~~~v~~l~~spdg~~l~sgs~  346 (354)
T 2pbi_B          316 GSRVS---ILFGHENRVSTLRVSPDGTAFCSGSW  346 (354)
T ss_dssp             CSEEE---EECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             CceEE---EEECCCCcEEEEEECCCCCEEEEEcC
Confidence            87654   67789999999999999998877664

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=4.8e-23  Score=216.78  Aligned_cols=244  Identities=13%  Similarity=0.097  Sum_probs=187.4

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCC--CCeEEEEeCCCeEEEEECCCCe--
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGS--  140 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSpD--G~~LASgs~DGtVrVWDl~tg~--  140 (767)
                      ....++++.++..|++++.|+.|++|++...      .+.+|...|++++|+++  +++|++++.|+.|+|||+.+++  
T Consensus        13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~   92 (379)
T 3jrp_A           13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS   92 (379)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEE
T ss_pred             cEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCcee
Confidence            3667788889999999999999999999732      47799999999999987  9999999999999999999987  


Q ss_pred             EEEEEccCCCCcEEEEEccCC--CcEEEEEeCCCeEEEEECCCCeEE---EeecCCCCeEEEEEcC-------------C
Q 004217          141 CLKVLHGHRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTAECI---GSRDFYRPIASIAFHA-------------S  202 (767)
Q Consensus       141 ~l~~L~gH~~~V~sLafsP~d--g~lLaSgS~DGtVrIWDl~tg~~i---~~l~h~~~VtsVafSP-------------d  202 (767)
                      .+..+.+|...|.+++|+| +  +++|++++.|+.|++||++++...   ....|...|.+++|+|             +
T Consensus        93 ~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  171 (379)
T 3jrp_A           93 QIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE  171 (379)
T ss_dssp             EEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CT
T ss_pred             EeeeecCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCC
Confidence            7788889999999999999 7  899999999999999999987432   3346889999999999             6


Q ss_pred             CCEEEEEECCc-EEEEEcCCCcccc-CCeEEecCCCCeEEEEEccC---CCeEEEEEe-----eCCcCCCCcceeEeecC
Q 004217          203 GELLAVASGHK-LYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPH---AAPLLLTAE-----VNDLDSSESSLTLATSP  272 (767)
Q Consensus       203 G~~LAsgSdd~-V~VWDl~t~~~~~-~~~~l~~h~~~VtsVaFSPD---G~~LlaSgs-----vwdl~s~~~~~~l~t~s  272 (767)
                      +.+|++++.++ |++||+++..... ....+..|...|.+++|+|+   +++|++++.     +|+++..........  
T Consensus       172 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--  249 (379)
T 3jrp_A          172 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL--  249 (379)
T ss_dssp             TCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE--
T ss_pred             CCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeee--
Confidence            99999999666 9999998765432 12356679999999999999   776666553     555543221111100  


Q ss_pred             CCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCC
Q 004217          273 GYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSG  352 (767)
Q Consensus       273 G~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~  352 (767)
                                              ........+++.++|+||++.+++...                 ...+.+|+....
T Consensus       250 ------------------------~~~~~~~~~v~~~~~s~~g~~l~~~~~-----------------dg~i~iw~~~~~  288 (379)
T 3jrp_A          250 ------------------------LKEEKFPDVLWRASWSLSGNVLALSGG-----------------DNKVTLWKENLE  288 (379)
T ss_dssp             ------------------------SSSSCCSSCEEEEEECSSSCCEEEEES-----------------SSSEEEEEEEET
T ss_pred             ------------------------eccccCCCcEEEEEEcCCCCEEEEecC-----------------CCcEEEEeCCCC
Confidence                                    000112335667899999999887322                 234677777654


Q ss_pred             ceeeee
Q 004217          353 QYELVL  358 (767)
Q Consensus       353 q~~~~~  358 (767)
                      .....+
T Consensus       289 ~~~~~~  294 (379)
T 3jrp_A          289 GKWEPA  294 (379)
T ss_dssp             TEEEEE
T ss_pred             Cccccc
Confidence            444433

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.92  E-value=1.3e-22  Score=210.00  Aligned_cols=180  Identities=19%  Similarity=0.208  Sum_probs=164.0

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEE
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV  144 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~  144 (767)
                      ....+++..++..|++++.|+.|++||....+      +..|...|.+++|+|++++|++++.|+.|++||+++++.+..
T Consensus        99 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~  178 (337)
T 1gxr_A           99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ  178 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee
Confidence            36678888899999999999999999998753      568999999999999999999999999999999999999999


Q ss_pred             EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCc
Q 004217          145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMRE  223 (767)
Q Consensus       145 L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~  223 (767)
                      +.+|...|.+++|+| ++++|++++.|+.|++||+++++.+..+.+...+.+++|+|++++|++++.++ |++||+++.+
T Consensus       179 ~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~  257 (337)
T 1gxr_A          179 FQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD  257 (337)
T ss_dssp             ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC
T ss_pred             eecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC
Confidence            999999999999999 89999999999999999999999999999999999999999999999999655 9999999876


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       224 ~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ..    ....|...|.+++|+|+++++++++.
T Consensus       258 ~~----~~~~~~~~v~~~~~~~~~~~l~~~~~  285 (337)
T 1gxr_A          258 KY----QLHLHESCVLSLKFAYCGKWFVSTGK  285 (337)
T ss_dssp             EE----EECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             eE----EEcCCccceeEEEECCCCCEEEEecC
Confidence            42    46789999999999999998776654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.92  E-value=2.7e-22  Score=225.85  Aligned_cols=184  Identities=11%  Similarity=0.091  Sum_probs=160.1

Q ss_pred             eEEEEEEc--CCCEEEEEeCCCeEEEEeCCCC------------CCCCCCCCeEEEEECCCCCeEEEEeCC----CeEEE
Q 004217           72 QIFEAGRD--ARRGLASWVEAESLHHLRPKYC------------PLSPPPRSTIAAAFSPDGKTLASTHGD----HTVKI  133 (767)
Q Consensus        72 ~~~vA~sd--~g~~LaSgs~DgsIrlWd~~t~------------~L~gH~~sVtsVaFSpDG~~LASgs~D----GtVrV  133 (767)
                      ...++++.  ++..|++++.|+.|++||..++            .+..|...|.+++|+|++++|++++.|    +.|++
T Consensus        67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~  146 (615)
T 1pgu_A           67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS  146 (615)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEE
T ss_pred             EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEE
Confidence            67788888  9999999999999999999633            356899999999999999999999988    68888


Q ss_pred             EECCCCeEEEEEccCCCCcEEEEEccCCCc-EEEEEeCCCeEEEEECCCCeEEEeec-CCC---CeEEEEEcCC-CCEEE
Q 004217          134 IDCQTGSCLKVLHGHRRTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAECIGSRD-FYR---PIASIAFHAS-GELLA  207 (767)
Q Consensus       134 WDl~tg~~l~~L~gH~~~V~sLafsP~dg~-lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~---~VtsVafSPd-G~~LA  207 (767)
                      ||  +++.+..+.+|...|.+++|+| +++ ++++++.|+.|++||+.+++.+..+. |..   .|.+++|+|+ +++|+
T Consensus       147 ~d--~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  223 (615)
T 1pgu_A          147 WD--SGNSLGEVSGHSQRINACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI  223 (615)
T ss_dssp             TT--TCCEEEECCSCSSCEEEEEECS-SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE
T ss_pred             EE--CCCcceeeecCCccEEEEEECC-CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEE
Confidence            88  6778899999999999999999 555 89999999999999999999988875 777   8999999999 99999


Q ss_pred             EEECCc-EEEEEcCCCccccCCeEE-e---cCCCCeEEEEEccCCCeEEEEEe-----eCCcCCC
Q 004217          208 VASGHK-LYIWRYNMREETSSPRIV-L---RTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS  262 (767)
Q Consensus       208 sgSdd~-V~VWDl~t~~~~~~~~~l-~---~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~  262 (767)
                      +++.++ |++||+++++...   .+ .   .|...|.+++|+ +++++++++.     +|++...
T Consensus       224 ~~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~  284 (615)
T 1pgu_A          224 TVGSDRKISCFDGKSGEFLK---YIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS  284 (615)
T ss_dssp             EEETTCCEEEEETTTCCEEE---ECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT
T ss_pred             EEeCCCeEEEEECCCCCEeE---EecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC
Confidence            999665 9999999887654   44 4   899999999999 9997777664     5666543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.92  E-value=4.6e-24  Score=225.40  Aligned_cols=183  Identities=15%  Similarity=0.119  Sum_probs=150.7

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC--CCCeEEEEeCCCeEEEEECCCC--eE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTG--SC  141 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSp--DG~~LASgs~DGtVrVWDl~tg--~~  141 (767)
                      ...++++.++..|++++.|++|++||+..+      .+.+|...|.+++|++  ++++|++|+.|++|+|||++++  +.
T Consensus        16 V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~   95 (316)
T 3bg1_A           16 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEK   95 (316)
T ss_dssp             EEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCE
T ss_pred             EEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceE
Confidence            556778889999999999999999998764      3679999999999986  4899999999999999999987  46


Q ss_pred             EEEEccCCCCcEEEEEccCC-CcEEEEEeCCCeEEEEECCCCeEE---Ee-ecCCCCeEEEEEcCC--------------
Q 004217          142 LKVLHGHRRTPWVVRFHPLN-PTIIASGSLDHEVRLWNASTAECI---GS-RDFYRPIASIAFHAS--------------  202 (767)
Q Consensus       142 l~~L~gH~~~V~sLafsP~d-g~lLaSgS~DGtVrIWDl~tg~~i---~~-l~h~~~VtsVafSPd--------------  202 (767)
                      +..+.+|...|.+++|+|++ +.+|++|+.|++|++||++++...   .. ..|...|.+++|+|+              
T Consensus        96 ~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~  175 (316)
T 3bg1_A           96 SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQK  175 (316)
T ss_dssp             EEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCC
T ss_pred             EEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccC
Confidence            67888999999999999932 789999999999999999876422   22 247788999999998              


Q ss_pred             ---CCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCC----CeEEEEE
Q 004217          203 ---GELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHA----APLLLTA  254 (767)
Q Consensus       203 ---G~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG----~~LlaSg  254 (767)
                         +++|++|+.|+ |++||++..........+.+|...|++++|+|++    ++|++++
T Consensus       176 ~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s  235 (316)
T 3bg1_A          176 PNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS  235 (316)
T ss_dssp             CCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred             ccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc
Confidence               46899998666 9999997653211123567899999999999997    5455544

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.92  E-value=5.3e-23  Score=231.48  Aligned_cols=213  Identities=27%  Similarity=0.370  Sum_probs=174.6

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ....+++..++..|++++.|+.|++|+....   .+.+|...|.+++|+||+++|++++.|+.|+|||. +++.+..+.+
T Consensus       346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~  424 (577)
T 2ymu_A          346 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG  424 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecC
Confidence            3667788899999999999999999997654   46789999999999999999999999999999995 5778899999


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCcccc
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETS  226 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~  226 (767)
                      |...|++++|+| ++++|++++.|++|++||...........|...|.+++|+|++++|++++.++ |++||.. ++...
T Consensus       425 ~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~~~  502 (577)
T 2ymu_A          425 HSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ  502 (577)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCEEE
T ss_pred             CCCCeEEEEECC-CCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CCEEE
Confidence            999999999999 89999999999999999975443333456899999999999999999999776 9999954 44333


Q ss_pred             CCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCC
Q 004217          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPL  301 (767)
Q Consensus       227 ~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~  301 (767)
                         .+.+|...|++++|+|||++|++++.     +||.. +   ..+.+..+                            
T Consensus       503 ---~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~---~~~~~~~~----------------------------  547 (577)
T 2ymu_A          503 ---TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G---QLLQTLTG----------------------------  547 (577)
T ss_dssp             ---EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-S---CEEEEEEC----------------------------
T ss_pred             ---EEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-C---CEEEEEcC----------------------------
Confidence               67889999999999999998877664     44421 1   11111122                            


Q ss_pred             CCCCceeeEEecCCCEEEEe
Q 004217          302 ITPPFLRPSFVRDDERISLQ  321 (767)
Q Consensus       302 ~slpil~psFSpDg~rIva~  321 (767)
                      ...+++.++|+|||++|+..
T Consensus       548 h~~~v~~~~fs~dg~~l~s~  567 (577)
T 2ymu_A          548 HSSSVWGVAFSPDGQTIASA  567 (577)
T ss_dssp             CSSCEEEEEECTTSSCEEEE
T ss_pred             CCCCEEEEEEcCCCCEEEEE
Confidence            33466678999999998863

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.92  E-value=1.5e-23  Score=226.11  Aligned_cols=240  Identities=10%  Similarity=0.090  Sum_probs=175.6

Q ss_pred             cceEEEEEEcCCCEEEEEeC------CCeEEEEeCCCCC--------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEE
Q 004217           70 FSQIFEAGRDARRGLASWVE------AESLHHLRPKYCP--------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIID  135 (767)
Q Consensus        70 ~s~~~vA~sd~g~~LaSgs~------DgsIrlWd~~t~~--------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWD  135 (767)
                      ....+++++.+|..|++++.      |+.|++|+..++.        ..+|...|.+++|+|+++ +++++.||+|+|||
T Consensus        43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd  121 (357)
T 4g56_B           43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWE  121 (357)
T ss_dssp             SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC-
T ss_pred             CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEee
Confidence            34677889999999999997      7789999987652        236889999999999986 45678899999999


Q ss_pred             CCCCeEE----EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCC-EEEEE
Q 004217          136 CQTGSCL----KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGE-LLAVA  209 (767)
Q Consensus       136 l~tg~~l----~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~-~LAsg  209 (767)
                      +.+++..    ....+|...|.+++|+| ++++|++|+.|++|++||+++++++..+. |...|++++|+|++. +++++
T Consensus       122 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~  200 (357)
T 4g56_B          122 ILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSC  200 (357)
T ss_dssp             -------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEE
T ss_pred             ccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeee
Confidence            9987654    23458999999999999 99999999999999999999999988875 889999999999985 77788


Q ss_pred             ECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeEeecCCCccCCCCeE
Q 004217          210 SGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLATSPGYWRYPPPVI  282 (767)
Q Consensus       210 Sdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~~~~l~t~sG~~~~p~~~v  282 (767)
                      +.++ |++||+++++... ......|...+.+++|+|++..+++++.      +||++..+....+   .+         
T Consensus       201 ~~dg~v~~wd~~~~~~~~-~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~---~~---------  267 (357)
T 4g56_B          201 GEDGRILLWDTRKPKPAT-RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS---AV---------  267 (357)
T ss_dssp             ETTSCEEECCTTSSSCBC-BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE---CC---------
T ss_pred             ccCCceEEEECCCCceee-eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE---ec---------
Confidence            7655 9999999887644 2233456788999999999776666554      4554433221111   11         


Q ss_pred             EEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217          283 CMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS  359 (767)
Q Consensus       283 ~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~  359 (767)
                                         ...++...+|+||++++++.                .+....+.+||..+++....+.
T Consensus       268 -------------------~~~~v~~l~~sp~~~~~las----------------gs~D~~i~iwd~~~~~~~~~~~  309 (357)
T 4g56_B          268 -------------------HSQNITGLAYSYHSSPFLAS----------------ISEDCTVAVLDADFSEVFRDLS  309 (357)
T ss_dssp             -------------------CSSCEEEEEECSSSSCCEEE----------------EETTSCEEEECTTSCEEEEECC
T ss_pred             -------------------cceeEEEEEEcCCCCCEEEE----------------EeCCCEEEEEECCCCcEeEECC
Confidence                               22345568899998765441                1122357889988887666553

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.92  E-value=5e-23  Score=215.36  Aligned_cols=193  Identities=10%  Similarity=0.071  Sum_probs=164.3

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ...++++.++..|++++.|+.|++||..++    .+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. 
T Consensus        35 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-  113 (369)
T 3zwl_B           35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-  113 (369)
T ss_dssp             EEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-
T ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-
Confidence            566778889999999999999999999876    477899999999999999999999999999999999999998887 


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCC-----CeEEEEECCCCeEE------------EeecCCC--CeEEEEEcCCCCEEEE
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLD-----HEVRLWNASTAECI------------GSRDFYR--PIASIAFHASGELLAV  208 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~D-----GtVrIWDl~tg~~i------------~~l~h~~--~VtsVafSPdG~~LAs  208 (767)
                      |...|.+++|+| +++++++++.+     +.|++||+.+....            ....+..  .+.+++|+|++++|++
T Consensus       114 ~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  192 (369)
T 3zwl_B          114 SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIA  192 (369)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEE
T ss_pred             cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEE
Confidence            889999999999 89999999999     99999999865421            1122444  8999999999999999


Q ss_pred             EECCc-EEEEEcCC-CccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEe
Q 004217          209 ASGHK-LYIWRYNM-REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA  269 (767)
Q Consensus       209 gSdd~-V~VWDl~t-~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~  269 (767)
                      ++.++ |++||+++ .+..   ..+..|...|.+++|+|++++|++++.     +||++.......+.
T Consensus       193 ~~~dg~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  257 (369)
T 3zwl_B          193 GHKDGKISKYDVSNNYEYV---DSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE  257 (369)
T ss_dssp             EETTSEEEEEETTTTTEEE---EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EcCCCEEEEEECCCCcEeE---EEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec
Confidence            99766 99999998 4433   367779999999999999998877654     88888765544443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.92  E-value=2.5e-24  Score=229.20  Aligned_cols=189  Identities=15%  Similarity=0.172  Sum_probs=149.5

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe---EE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CL  142 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~---~l  142 (767)
                      ...++++.++..|++++.|+.|++|+..++      .+.+|...|.+++|+|++++|++++.|++|+|||+.+++   ..
T Consensus        14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~   93 (377)
T 3dwl_C           14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT   93 (377)
T ss_dssp             CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE
T ss_pred             EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee
Confidence            344667788999999999999999999865      477999999999999999999999999999999999877   67


Q ss_pred             EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE---EEee-c-CCCCeEEEEEcCCCCEEEEEECCc-EEE
Q 004217          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---IGSR-D-FYRPIASIAFHASGELLAVASGHK-LYI  216 (767)
Q Consensus       143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~---i~~l-~-h~~~VtsVafSPdG~~LAsgSdd~-V~V  216 (767)
                      ..+.+|...|.+++|+| ++++|++++.|++|++||+++++.   ...+ . |...|.+++|+|++++|++++.++ |++
T Consensus        94 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~i  172 (377)
T 3dwl_C           94 LVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYV  172 (377)
T ss_dssp             EECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEE
T ss_pred             eEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEE
Confidence            77889999999999999 899999999999999999998873   4444 3 889999999999999999999766 999


Q ss_pred             EEcCCCccc---------------cCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCC
Q 004217          217 WRYNMREET---------------SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS  262 (767)
Q Consensus       217 WDl~t~~~~---------------~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~  262 (767)
                      ||++..+..               .....+ .|...|++++|+|++++|++++.     +||+...
T Consensus       173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          173 LSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             EEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred             EEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            999643210               001122 88999999999999998887765     5555543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.92  E-value=6.7e-22  Score=222.63  Aligned_cols=236  Identities=10%  Similarity=0.062  Sum_probs=184.6

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----C----CCCCCCC-eEEEEECC--CCCeEEEEeCCCeEEEEECCCC-
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----P----LSPPPRS-TIAAAFSP--DGKTLASTHGDHTVKIIDCQTG-  139 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~----L~gH~~s-VtsVaFSp--DG~~LASgs~DGtVrVWDl~tg-  139 (767)
                      ...++++.+++.|++++ ++.|++|+..++    +    +.+|... |.+++|+|  |+++|++++.|++|+|||+.++ 
T Consensus        21 v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~   99 (615)
T 1pgu_A           21 TTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   99 (615)
T ss_dssp             CCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             eeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCc
Confidence            45577888999999988 889999999865    3    6789999 99999999  9999999999999999999755 


Q ss_pred             -------eEEEEEccCCCCcEEEEEccCCCcEEEEEeCC----CeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCC-EE
Q 004217          140 -------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD----HEVRLWNASTAECIGSR-DFYRPIASIAFHASGE-LL  206 (767)
Q Consensus       140 -------~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~D----GtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~-~L  206 (767)
                             +.+..+.+|...|.+++|+| ++++|++++.|    +.|++||  .++.+..+ .|...|.+++|+|+++ +|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l  176 (615)
T 1pgu_A          100 ESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRS  176 (615)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEE
T ss_pred             ccccccccccchhhcccccEEEEEEeC-CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEE
Confidence                   67788899999999999999 89999999988    6888888  45555554 5889999999999998 78


Q ss_pred             EEEECCc-EEEEEcCCCccccCCeEEecCCC---CeEEEEEccC-CCeEEEEEe-----eCCcCCCCcceeEeecCCCcc
Q 004217          207 AVASGHK-LYIWRYNMREETSSPRIVLRTRR---SLRAVHFHPH-AAPLLLTAE-----VNDLDSSESSLTLATSPGYWR  276 (767)
Q Consensus       207 AsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~---~VtsVaFSPD-G~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~  276 (767)
                      ++++.++ |++||+.+.+...   .+..|..   .|++++|+|+ ++++++++.     +||+..++....+.  .    
T Consensus       177 ~~~~~d~~v~vwd~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~----  247 (615)
T 1pgu_A          177 MTVGDDGSVVFYQGPPFKFSA---SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE--D----  247 (615)
T ss_dssp             EEEETTTEEEEEETTTBEEEE---EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC--B----
T ss_pred             EEEeCCCcEEEEeCCCcceee---eecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEec--c----
Confidence            8888666 9999998887654   6777888   9999999999 997777654     55554322211110  0    


Q ss_pred             CCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceee
Q 004217          277 YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYEL  356 (767)
Q Consensus       277 ~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~  356 (767)
                                           .......++....|+ |+..++...                 ....+.+||..+++...
T Consensus       248 ---------------------~~~~~~~~v~~~~~~-~~~~l~~~~-----------------~d~~i~~wd~~~~~~~~  288 (615)
T 1pgu_A          248 ---------------------DQEPVQGGIFALSWL-DSQKFATVG-----------------ADATIRVWDVTTSKCVQ  288 (615)
T ss_dssp             ---------------------TTBCCCSCEEEEEES-SSSEEEEEE-----------------TTSEEEEEETTTTEEEE
T ss_pred             ---------------------cccccCCceEEEEEc-CCCEEEEEc-----------------CCCcEEEEECCCCcEEE
Confidence                                 000223355678888 888888622                 23458889998887776


Q ss_pred             eec
Q 004217          357 VLS  359 (767)
Q Consensus       357 ~~~  359 (767)
                      .+.
T Consensus       289 ~~~  291 (615)
T 1pgu_A          289 KWT  291 (615)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            663

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.92  E-value=3.2e-23  Score=213.26  Aligned_cols=267  Identities=14%  Similarity=0.085  Sum_probs=190.7

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC--CCCeEEEEeCCCeEEEEECCCC-
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTG-  139 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~--------~L~gH~~sVtsVaFSp--DG~~LASgs~DGtVrVWDl~tg-  139 (767)
                      ....++++.++..|++++.|+.|++||+...        .+.+|...|.+++|+|  |+++|++++.|+.|+|||++++ 
T Consensus        13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~   92 (351)
T 3f3f_A           13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ   92 (351)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTS
T ss_pred             ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCc
Confidence            3667888889999999999999999999864        2458999999999999  6999999999999999999887 


Q ss_pred             --------eEEEEEccCCCCcEEEEEccCC--CcEEEEEeCCCeEEEEECCCCeEEEee--------------cCCCCeE
Q 004217          140 --------SCLKVLHGHRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTAECIGSR--------------DFYRPIA  195 (767)
Q Consensus       140 --------~~l~~L~gH~~~V~sLafsP~d--g~lLaSgS~DGtVrIWDl~tg~~i~~l--------------~h~~~Vt  195 (767)
                              +.+..+.+|...|.+++|+| +  +++|++++.|+.|++||+++++.+..+              .+...+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (351)
T 3f3f_A           93 EECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDF  171 (351)
T ss_dssp             CTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCE
T ss_pred             ccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCccccee
Confidence                    66888999999999999999 7  899999999999999999987654331              4677899


Q ss_pred             EEEEcCC---CCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCC----CeEEEEEe-----eCCcCCC
Q 004217          196 SIAFHAS---GELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHA----APLLLTAE-----VNDLDSS  262 (767)
Q Consensus       196 sVafSPd---G~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG----~~LlaSgs-----vwdl~s~  262 (767)
                      +++|+|+   +.+|++++.++ +.+|+....+. .....+.+|...|++++|+|++    ++|++++.     +||++..
T Consensus       172 ~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          172 CLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL-HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             EEEECCCSSSCCEEEEEETTEEEEEEECTTSCE-EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred             EEEeccCCCCCcEEEEecCCCcEEEEccCCCce-eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence            9999997   88999999877 65665555443 2134566799999999999998    55555554     7777644


Q ss_pred             CcceeEeecCCCccCCCC------------------eEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecC
Q 004217          263 ESSLTLATSPGYWRYPPP------------------VICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE  324 (767)
Q Consensus       263 ~~~~~l~t~sG~~~~p~~------------------~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~  324 (767)
                      ..................                  ...++.   ...............++...+|+||++.|+..   
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~---  324 (351)
T 3f3f_A          251 LSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQS---NLQVELLSEHDDHNGEVWSVSWNLTGTILSSA---  324 (351)
T ss_dssp             C---------------------------------------CC---SEEEEEEEEECTTSSCEEEEEECSSSCCEEEE---
T ss_pred             cCccccCCcccceeccCCCcccccccccccccccceeeeecc---cccccEEEEEecccccEEEEEEcCCCCEEEEe---
Confidence            322211111000000000                  000000   00001112222344567789999999988862   


Q ss_pred             CCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217          325 HDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS  359 (767)
Q Consensus       325 ~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~  359 (767)
                                    +....+.+|+..+++...++.
T Consensus       325 --------------~~dg~v~iw~~~~~~~~~~~~  345 (351)
T 3f3f_A          325 --------------GDDGKVRLWKATYSNEFKCMS  345 (351)
T ss_dssp             --------------ETTSCEEEEEECTTSCEEEEE
T ss_pred             --------------cCCCcEEEEecCcCcchhhee
Confidence                          233468899998887776664

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.92  E-value=2e-22  Score=209.80  Aligned_cols=261  Identities=15%  Similarity=0.152  Sum_probs=194.8

Q ss_pred             eEEEEEEcC-CCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE
Q 004217           72 QIFEAGRDA-RRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC  141 (767)
Q Consensus        72 ~~~vA~sd~-g~~LaSgs~DgsIrlWd~~t~---------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~  141 (767)
                      +..+++..+ +..|++++.|++|++||+...         .+.+|...|.+++|+||+++|++++.|+.|++|+......
T Consensus        41 V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~  120 (340)
T 4aow_A           41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT  120 (340)
T ss_dssp             EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccce
Confidence            556777754 789999999999999998753         3678999999999999999999999999999999999998


Q ss_pred             EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe--ecCCCCeEEEEEcCCC--CEEEEEECCc-EEE
Q 004217          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFHASG--ELLAVASGHK-LYI  216 (767)
Q Consensus       142 l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~--l~h~~~VtsVafSPdG--~~LAsgSdd~-V~V  216 (767)
                      ......+...+..+.+++ ++++|++++.|+.+++||+........  ..|...+..++|++++  .++++++.++ |++
T Consensus       121 ~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i  199 (340)
T 4aow_A          121 TRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV  199 (340)
T ss_dssp             EEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEE
T ss_pred             eeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEE
Confidence            888888999999999999 889999999999999999987665544  3478899999999876  4778888665 999


Q ss_pred             EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCcc--C----------CC
Q 004217          217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR--Y----------PP  279 (767)
Q Consensus       217 WDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~--~----------p~  279 (767)
                      ||+++.+...   .+.+|...|++++|+|++++|++++.     +||++.......+........  +          ..
T Consensus       200 ~d~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d  276 (340)
T 4aow_A          200 WNLANCKLKT---NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATG  276 (340)
T ss_dssp             EETTTTEEEE---EECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEET
T ss_pred             EECCCCceee---EecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCC
Confidence            9999887655   67889999999999999997777654     788876554433332111000  0          11


Q ss_pred             CeEEEecCCCCCCCce------eeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCc
Q 004217          280 PVICMAGAHSSSHPGL------AEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQ  353 (767)
Q Consensus       280 ~~v~l~~~~Ssd~~~L------~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q  353 (767)
                      ..+.+|+.........      ..........+...+|+||+++|+...                 ....+.+||..+|.
T Consensus       277 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-----------------~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          277 PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY-----------------TDNLVRVWQVTIGT  339 (340)
T ss_dssp             TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE-----------------TTSCEEEEEEEC--
T ss_pred             CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe-----------------CCCEEEEEeCCCcC
Confidence            3344555332211111      111122344566899999999988722                 22357788877653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.92  E-value=7.2e-23  Score=239.03  Aligned_cols=233  Identities=15%  Similarity=0.123  Sum_probs=186.9

Q ss_pred             eEEEEEEc-CCCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE
Q 004217           72 QIFEAGRD-ARRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC  141 (767)
Q Consensus        72 ~~~vA~sd-~g~~LaSgs~DgsIrlWd~~t~---------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~  141 (767)
                      +.++++.. ++..|++++.|++|++|++...         .+.+|...|.+++|+|++++|++|+.|++|+|||+.+++.
T Consensus       385 V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~  464 (694)
T 3dm0_A          385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS  464 (694)
T ss_dssp             EEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             eEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence            55566653 4689999999999999998753         3668999999999999999999999999999999999999


Q ss_pred             EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee----cCCCCeEEEEEcCCC--CEEEEEECCc-E
Q 004217          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAFHASG--ELLAVASGHK-L  214 (767)
Q Consensus       142 l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l----~h~~~VtsVafSPdG--~~LAsgSdd~-V  214 (767)
                      +..+.+|...|.+++|+| ++++|++++.|++|++||+.........    .|...|.+++|+|++  .+|++++.|+ |
T Consensus       465 ~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v  543 (694)
T 3dm0_A          465 TRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV  543 (694)
T ss_dssp             EEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCE
T ss_pred             eeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeE
Confidence            999999999999999999 8999999999999999998765544332    477889999999987  5889998666 9


Q ss_pred             EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCC
Q 004217          215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHS  289 (767)
Q Consensus       215 ~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~S  289 (767)
                      ++||+++.+...   .+.+|...|++++|+|++++|++++.     +||+..+..   +....                 
T Consensus       544 ~vwd~~~~~~~~---~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~---~~~~~-----------------  600 (694)
T 3dm0_A          544 KVWNLSNCKLRS---TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK---LYSLE-----------------  600 (694)
T ss_dssp             EEEETTTCCEEE---EECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE---EECCB-----------------
T ss_pred             EEEECCCCcEEE---EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce---EEEec-----------------
Confidence            999999887544   67889999999999999997777664     555553221   11000                 


Q ss_pred             CCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217          290 SSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       290 sd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                                  ....+...+|+||+..+....                  ...+.+||..+++....+
T Consensus       601 ------------~~~~v~~~~~sp~~~~l~~~~------------------~~~i~iwd~~~~~~~~~~  639 (694)
T 3dm0_A          601 ------------ANSVIHALCFSPNRYWLCAAT------------------EHGIKIWDLESKSIVEDL  639 (694)
T ss_dssp             ------------CSSCEEEEEECSSSSEEEEEE------------------TTEEEEEETTTTEEEEEE
T ss_pred             ------------CCCcEEEEEEcCCCcEEEEEc------------------CCCEEEEECCCCCChhhh
Confidence                        012344688999998887621                  123788999888776666

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.92  E-value=4.2e-22  Score=206.14  Aligned_cols=232  Identities=13%  Similarity=0.100  Sum_probs=187.4

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----C-----CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe--
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP----L-----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS--  140 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L-----~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~--  140 (767)
                      ...+++..++..|++++ |+.|++|+.....    +     .+|...|.+++|+|++++|++++.|+.|++||+.+++  
T Consensus        54 v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~  132 (337)
T 1gxr_A           54 VCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR  132 (337)
T ss_dssp             CCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E
T ss_pred             eEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc
Confidence            55677888999999998 9999999997652    1     2789999999999999999999999999999999887  


Q ss_pred             EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEE
Q 004217          141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWR  218 (767)
Q Consensus       141 ~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWD  218 (767)
                      ....+.+|...|.+++|+| +++++++++.|+.|++||+++++.+..+. |...|.+++|+|++++|++++.++ |++||
T Consensus       133 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d  211 (337)
T 1gxr_A          133 IKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD  211 (337)
T ss_dssp             EEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             eeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEE
Confidence            6677889999999999999 89999999999999999999999888865 788999999999999999999665 99999


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCC
Q 004217          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHP  293 (767)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~  293 (767)
                      +++++...    ...+...+.+++|+|+++++++++.     +|++...+.                            .
T Consensus       212 ~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~----------------------------~  259 (337)
T 1gxr_A          212 LREGRQLQ----QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK----------------------------Y  259 (337)
T ss_dssp             TTTTEEEE----EEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE----------------------------E
T ss_pred             CCCCceEe----eecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe----------------------------E
Confidence            99887544    3457889999999999998877654     344332110                            0


Q ss_pred             ceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217          294 GLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       294 ~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                          .......++..+.|+||++.+++..                 ....+.+||..+++.....
T Consensus       260 ----~~~~~~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~~~~~~~~~~~~~~  303 (337)
T 1gxr_A          260 ----QLHLHESCVLSLKFAYCGKWFVSTG-----------------KDNLLNAWRTPYGASIFQS  303 (337)
T ss_dssp             ----EECCCSSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTCCEEEEE
T ss_pred             ----EEcCCccceeEEEECCCCCEEEEec-----------------CCCcEEEEECCCCeEEEEe
Confidence                0011233566789999999988732                 2345788888887766444

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.5e-23  Score=219.96  Aligned_cols=183  Identities=21%  Similarity=0.269  Sum_probs=147.1

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC-
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-  138 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t-  138 (767)
                      ....++++.++..|++++.|++|++|+....           .+.+|...|.+++|+|++++|++|+.|++|+|||+.. 
T Consensus        60 ~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~  139 (330)
T 2hes_X           60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES  139 (330)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTT
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC
Confidence            3667888889999999999999999998421           3679999999999999999999999999999999943 


Q ss_pred             ---CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC--eEEEee-cCCCCeEEEEEcCC--CCEEEEEE
Q 004217          139 ---GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA--ECIGSR-DFYRPIASIAFHAS--GELLAVAS  210 (767)
Q Consensus       139 ---g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg--~~i~~l-~h~~~VtsVafSPd--G~~LAsgS  210 (767)
                         .+++..+.+|...|.+++|+| ++++|++++.|++|++||+.++  +++..+ .|...|.+++|+|+  +.+|++++
T Consensus       140 ~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s  218 (330)
T 2hes_X          140 GEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS  218 (330)
T ss_dssp             CCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE
T ss_pred             CCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe
Confidence               356788999999999999999 8999999999999999999876  556665 48899999999999  67899999


Q ss_pred             CCc-EEEEEcCCCccc-----cCCeEEec-CCCCeEEEEEccCCCeEEEEEe
Q 004217          211 GHK-LYIWRYNMREET-----SSPRIVLR-TRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       211 dd~-V~VWDl~t~~~~-----~~~~~l~~-h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .|+ |++||++.....     .....+.. |...|++++|++++ +|++++.
T Consensus       219 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~  269 (330)
T 2hes_X          219 DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGA  269 (330)
T ss_dssp             TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEET
T ss_pred             CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeC
Confidence            766 999999764211     11112233 88999999999776 4666554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.91  E-value=1.7e-22  Score=219.21  Aligned_cols=259  Identities=11%  Similarity=0.083  Sum_probs=185.3

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---------------CCCCCC------------CCeEEEEECCCC--Ce
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC---------------PLSPPP------------RSTIAAAFSPDG--KT  121 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---------------~L~gH~------------~sVtsVaFSpDG--~~  121 (767)
                      ...+++++.++..|++++.|+.|++|+..+.               .+.+|.            ..|.+++|+|++  .+
T Consensus        30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~  109 (447)
T 3dw8_B           30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQ  109 (447)
T ss_dssp             SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSE
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcce
Confidence            3667888899999999999999999998754               355898            889999999998  79


Q ss_pred             EEEEeCCCeEEEEECCCCeEE---------------------------------------EE-EccCCCCcEEEEEccCC
Q 004217          122 LASTHGDHTVKIIDCQTGSCL---------------------------------------KV-LHGHRRTPWVVRFHPLN  161 (767)
Q Consensus       122 LASgs~DGtVrVWDl~tg~~l---------------------------------------~~-L~gH~~~V~sLafsP~d  161 (767)
                      |++++.|++|++||+.+++..                                       .. +.+|...|.+++|+| +
T Consensus       110 l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~  188 (447)
T 3dw8_B          110 FLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-D  188 (447)
T ss_dssp             EEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-T
T ss_pred             EEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC-C
Confidence            999999999999999764432                                       12 368999999999999 8


Q ss_pred             CcEEEEEeCCCeEEEEECCC-CeEEEee--------cCCCCeEEEEEcCCC-CEEEEEECCc-EEEEEcCCCcccc-CCe
Q 004217          162 PTIIASGSLDHEVRLWNAST-AECIGSR--------DFYRPIASIAFHASG-ELLAVASGHK-LYIWRYNMREETS-SPR  229 (767)
Q Consensus       162 g~lLaSgS~DGtVrIWDl~t-g~~i~~l--------~h~~~VtsVafSPdG-~~LAsgSdd~-V~VWDl~t~~~~~-~~~  229 (767)
                      +++|++| .|++|++||+++ ++.+..+        .|...|.+++|+|++ ++|++++.++ |++||+++++... ...
T Consensus       189 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  267 (447)
T 3dw8_B          189 YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSK  267 (447)
T ss_dssp             SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCE
T ss_pred             CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceee
Confidence            9999998 799999999994 4455432        588899999999999 8999999766 9999999887421 123


Q ss_pred             EEecCCC------------CeEEEEEccCCCeEEEEEe----eCCcCC-CCcceeEeecCCCccCCCCeEEEecCCCCCC
Q 004217          230 IVLRTRR------------SLRAVHFHPHAAPLLLTAE----VNDLDS-SESSLTLATSPGYWRYPPPVICMAGAHSSSH  292 (767)
Q Consensus       230 ~l~~h~~------------~VtsVaFSPDG~~LlaSgs----vwdl~s-~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~  292 (767)
                      .+..|..            .|.+++|+|+|++|++++.    +||++. ......+.   +|...... ++         
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~---~~~~~~~~-l~---------  334 (447)
T 3dw8_B          268 LFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQ---VHEYLRSK-LC---------  334 (447)
T ss_dssp             EECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEE---SCGGGTTT-HH---------
T ss_pred             EeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceee---cccccccc-cc---------
Confidence            5666665            8999999999998777654    666653 22222111   11100000 00         


Q ss_pred             CceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeeccCCCC
Q 004217          293 PGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASN  364 (767)
Q Consensus       293 ~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~p~~p~  364 (767)
                       .+..  ...-...+.++|+||+.+|+..                 +....+.+||..+++........+|.
T Consensus       335 -~~~~--~~~i~~~~~~~~s~~~~~l~s~-----------------s~dg~v~iwd~~~~~~~~~~~~~~~~  386 (447)
T 3dw8_B          335 -SLYE--NDCIFDKFECCWNGSDSVVMTG-----------------SYNNFFRMFDRNTKRDITLEASRENN  386 (447)
T ss_dssp             -HHHH--TSGGGCCCCEEECTTSSEEEEE-----------------CSTTEEEEEETTTCCEEEEECCSTTC
T ss_pred             -cccc--ccccccceEEEECCCCCEEEEe-----------------ccCCEEEEEEcCCCcceeeeeccccc
Confidence             0000  0000012248999999999762                 23456899999988776444344433

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1e-22  Score=218.35  Aligned_cols=198  Identities=12%  Similarity=0.147  Sum_probs=166.6

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCC----C----CCCCCCCCeEEEEECCC-CCeEEEEeCCCeEEEEECCCCe-
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKY----C----PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGS-  140 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t----~----~L~gH~~sVtsVaFSpD-G~~LASgs~DGtVrVWDl~tg~-  140 (767)
                      ....++++.++..|++++.|+.|++|+...    .    .+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++ 
T Consensus        69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  148 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTE  148 (416)
T ss_dssp             CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSS
T ss_pred             ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcc
Confidence            467788889999999999999999999987    2    47789999999999998 8999999999999999999876 


Q ss_pred             -----EEE---EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC-------CCCeEEEEEcCCC-C
Q 004217          141 -----CLK---VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-------YRPIASIAFHASG-E  204 (767)
Q Consensus       141 -----~l~---~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h-------~~~VtsVafSPdG-~  204 (767)
                           ...   .+.+|...|.+++|+|+++.+|++++.|+.|++||+++++.+..+..       ...|.+++|+|++ .
T Consensus       149 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (416)
T 2pm9_A          149 SPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST  228 (416)
T ss_dssp             CTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred             ccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence                 332   34679999999999994489999999999999999999998888653       6889999999998 5


Q ss_pred             EEEEEECC----cEEEEEcCCCccccCCeEEe-cCCCCeEEEEEcc-CCCeEEEEEe-----eCCcCCCCcceeEee
Q 004217          205 LLAVASGH----KLYIWRYNMREETSSPRIVL-RTRRSLRAVHFHP-HAAPLLLTAE-----VNDLDSSESSLTLAT  270 (767)
Q Consensus       205 ~LAsgSdd----~V~VWDl~t~~~~~~~~~l~-~h~~~VtsVaFSP-DG~~LlaSgs-----vwdl~s~~~~~~l~t  270 (767)
                      +|++++.+    .|++||+++....  ...+. +|...|++++|+| ++++|++++.     +||++..+....+..
T Consensus       229 ~l~~~~~d~~~~~i~~~d~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~  303 (416)
T 2pm9_A          229 RVATATGSDNDPSILIWDLRNANTP--LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA  303 (416)
T ss_dssp             EEEEEECCSSSCCCCEEETTSTTSC--SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred             EEEEEECCCCCceEEEEeCCCCCCC--cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence            88888865    7999999986432  23455 7999999999999 8887777664     888887665555443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.91  E-value=2.2e-22  Score=214.28  Aligned_cols=227  Identities=15%  Similarity=0.137  Sum_probs=169.0

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~  146 (767)
                      ....+++..++..+++++.|++|++||+.++    .+.+|...|.+++|+|++++|++++.|++|++||+... ....+.
T Consensus        78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~  156 (343)
T 2xzm_R           78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSA  156 (343)
T ss_dssp             CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECC
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeee
Confidence            3666778889999999999999999999886    36799999999999999999999999999999999844 333333


Q ss_pred             ---cCCCCcEEEEEccCCC----------cEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEECC
Q 004217          147 ---GHRRTPWVVRFHPLNP----------TIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGH  212 (767)
Q Consensus       147 ---gH~~~V~sLafsP~dg----------~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd  212 (767)
                         +|...|.+++|+| +.          .+|++++.|++|++||.. .+.... ..|...|.+++|+|+|++|++|+.|
T Consensus       157 ~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~d  234 (343)
T 2xzm_R          157 EKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKD  234 (343)
T ss_dssp             TTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCEEEEEcCC
Confidence               7899999999999 54          789999999999999954 455444 4688999999999999999999966


Q ss_pred             c-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe----eCCcCCCCcceeEeecCCCccCCCCeEEEecC
Q 004217          213 K-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE----VNDLDSSESSLTLATSPGYWRYPPPVICMAGA  287 (767)
Q Consensus       213 ~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~  287 (767)
                      + |++||++......   ....+...|.+++|+|++.+++++..    +|++......... .....             
T Consensus       235 g~v~iwd~~~~~~~~---~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~-~~~~~-------------  297 (343)
T 2xzm_R          235 KKLLIWDILNLTYPQ---REFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVC-TIEAE-------------  297 (343)
T ss_dssp             CEEEEEESSCCSSCS---EEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEE-ECCCC-------------
T ss_pred             CeEEEEECCCCcccc---eeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceE-EeecC-------------
Confidence            6 9999996544322   33345667999999999986554332    5665543221100 00000             


Q ss_pred             CCCCCCceeeccCCCCCCceeeEEecCCCEEEEe
Q 004217          288 HSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (767)
Q Consensus       288 ~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~  321 (767)
                          ..............+...+|+||+..|++.
T Consensus       298 ----~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg  327 (343)
T 2xzm_R          298 ----PITKAEGQKGKNPQCTSLAWNALGKKLFAG  327 (343)
T ss_dssp             ----SGGGBTTBCCSCCCEEEEEECSSSCCEEEE
T ss_pred             ----cchhhhhhcCCCCceEEEEECCCCCeEEEe
Confidence                000000111233456689999999999873

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.91  E-value=1.5e-22  Score=211.11  Aligned_cols=206  Identities=20%  Similarity=0.312  Sum_probs=169.5

Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC
Q 004217          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t  181 (767)
                      .+.+|...|++++|+|++++|++++.|+.|+|||+.+++....+.+|...|.+++|+| ++++|++++.|+.|++||+++
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~   96 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSS   96 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred             EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEEEECCC
Confidence            4678999999999999999999999999999999999999999999999999999999 899999999999999999999


Q ss_pred             CeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe----
Q 004217          182 AECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE----  255 (767)
Q Consensus       182 g~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs----  255 (767)
                      ++++..+. |...|.+++|+|++++|++++.++ |++||+++++...   .+..|...|.+++|+|+++++++++.    
T Consensus        97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  173 (312)
T 4ery_A           97 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  173 (312)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE---EecCCCCcEEEEEEcCCCCEEEEEeCCCcE
Confidence            99888764 888999999999999999999666 9999999887654   67789999999999999997776654    


Q ss_pred             -eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCccccc
Q 004217          256 -VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQ  334 (767)
Q Consensus       256 -vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~  334 (767)
                       +||++.......+                              ......++...+|+|+++.+++..            
T Consensus       174 ~~wd~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~l~~~~------------  211 (312)
T 4ery_A          174 RIWDTASGQCLKTL------------------------------IDDDNPPVSFVKFSPNGKYILAAT------------  211 (312)
T ss_dssp             EEEETTTCCEEEEE------------------------------CCSSCCCEEEEEECTTSSEEEEEE------------
T ss_pred             EEEECCCCceeeEE------------------------------eccCCCceEEEEECCCCCEEEEEc------------
Confidence             5555432211110                              001122445689999999988722            


Q ss_pred             ccccCCceeeeeccCCCCceeeee
Q 004217          335 SLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       335 ~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                           ....+.+||..+++....+
T Consensus       212 -----~d~~i~iwd~~~~~~~~~~  230 (312)
T 4ery_A          212 -----LDNTLKLWDYSKGKCLKTY  230 (312)
T ss_dssp             -----TTTEEEEEETTTTEEEEEE
T ss_pred             -----CCCeEEEEECCCCcEEEEE
Confidence                 2345888999887766655

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.91  E-value=1.6e-21  Score=240.59  Aligned_cols=233  Identities=20%  Similarity=0.274  Sum_probs=178.5

Q ss_pred             CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC
Q 004217          103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA  182 (767)
Q Consensus       103 L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg  182 (767)
                      +.+|.+.|++++|+|||++|++|+.||+|+|||+.+++.+..+.+|...|.+++|+| +++++++++.|++|++||+.++
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~  689 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATG  689 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEec-CCCEEEEEeCCCeEEEEECCCC
Confidence            568999999999999999999999999999999999999999999999999999999 8999999999999999999999


Q ss_pred             eEEEee-cCCCCeEEEEEcCC--CCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe---
Q 004217          183 ECIGSR-DFYRPIASIAFHAS--GELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE---  255 (767)
Q Consensus       183 ~~i~~l-~h~~~VtsVafSPd--G~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs---  255 (767)
                      +++..+ .|...|.+++|+|+  +.++++++.++ |++||+++++...   .+.+|...|++++|+|+++++++++.   
T Consensus       690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~h~~~v~~~~~sp~~~~l~s~s~dg~  766 (1249)
T 3sfz_A          690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN---TMFGHTNSVNHCRFSPDDELLASCSADGT  766 (1249)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE---EECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred             ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh---eecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence            998886 58899999999994  55889998766 9999999987654   67789999999999999998877665   


Q ss_pred             --eCCcCCCCcceeEeecCCCcc----------------C-C---------CCeEEEecCCCCCCCceeeccCCCCCCce
Q 004217          256 --VNDLDSSESSLTLATSPGYWR----------------Y-P---------PPVICMAGAHSSSHPGLAEEVPLITPPFL  307 (767)
Q Consensus       256 --vwdl~s~~~~~~l~t~sG~~~----------------~-p---------~~~v~l~~~~Ssd~~~L~sg~~~~slpil  307 (767)
                        +||+........+........                + +         ...+.+|+...+..  +..-......++.
T Consensus       767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~v~  844 (1249)
T 3sfz_A          767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGL--LAEIHTGHHSTIQ  844 (1249)
T ss_dssp             EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCE--EEEEECSSSSCCC
T ss_pred             EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCc--eeEEcCCCCCceE
Confidence              888876554433322110000                0 0         12233344322221  1111123345566


Q ss_pred             eeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217          308 RPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       308 ~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                      ...|+|++..+++..                 ....+..||..+++....+
T Consensus       845 ~~~~sp~~~~l~~~~-----------------~dg~v~vwd~~~~~~~~~~  878 (1249)
T 3sfz_A          845 YCDFSPYDHLAVIAL-----------------SQYCVELWNIDSRLKVADC  878 (1249)
T ss_dssp             EEEECSSTTEEEEEC-----------------SSSCEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCEEEEEe-----------------CCCeEEEEEcCCCceeeec
Confidence            788999999888722                 2235778888877665555

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.91  E-value=2.4e-22  Score=210.41  Aligned_cols=247  Identities=17%  Similarity=0.148  Sum_probs=183.9

Q ss_pred             eEEEEEEc----CCCEEEEEeCCCeEEEEeCCCCC----C-----CCCCCCeEEEEECCC----CCeEEEEeCCCeEEEE
Q 004217           72 QIFEAGRD----ARRGLASWVEAESLHHLRPKYCP----L-----SPPPRSTIAAAFSPD----GKTLASTHGDHTVKII  134 (767)
Q Consensus        72 ~~~vA~sd----~g~~LaSgs~DgsIrlWd~~t~~----L-----~gH~~sVtsVaFSpD----G~~LASgs~DGtVrVW  134 (767)
                      ...+++..    +...++++..++.|++|+..+++    +     ..|...|.+++|+|+    +++|++|+.|+.|+||
T Consensus        21 v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~  100 (366)
T 3k26_A           21 LFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII  100 (366)
T ss_dssp             EEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEE
T ss_pred             eEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEE
Confidence            55566664    45667777777799999998652    1     237788999999998    6799999999999999


Q ss_pred             ECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee----cCCCCeEEEEEcCCCCEEEEEE
Q 004217          135 DCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAFHASGELLAVAS  210 (767)
Q Consensus       135 Dl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l----~h~~~VtsVafSPdG~~LAsgS  210 (767)
                      |+.+++.+..+.+|...|.+++|+|.++++|++++.|++|++||+++++.+..+    .|...|.+++|+|++++|++++
T Consensus       101 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  180 (366)
T 3k26_A          101 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG  180 (366)
T ss_dssp             CTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEE
T ss_pred             EchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEec
Confidence            999999999999999999999999977899999999999999999999998886    5889999999999999999999


Q ss_pred             CCc-EEEEEcCCCccccC-------------------------CeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCc
Q 004217          211 GHK-LYIWRYNMREETSS-------------------------PRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDL  259 (767)
Q Consensus       211 dd~-V~VWDl~t~~~~~~-------------------------~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl  259 (767)
                      .++ |++||+++.+....                         ......|...|.+++|+  ++++++++.     +|++
T Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~  258 (366)
T 3k26_A          181 MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKP  258 (366)
T ss_dssp             TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEE
T ss_pred             CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeC
Confidence            665 99999997754320                         01122388999999999  666666544     7887


Q ss_pred             CCCCcc-----------eeEeecCCCcc-------------------CCCCeEEEecCCCCCCCc-eeeccCCC--CCCc
Q 004217          260 DSSESS-----------LTLATSPGYWR-------------------YPPPVICMAGAHSSSHPG-LAEEVPLI--TPPF  306 (767)
Q Consensus       260 ~s~~~~-----------~~l~t~sG~~~-------------------~p~~~v~l~~~~Ssd~~~-L~sg~~~~--slpi  306 (767)
                      ......           ..+....++..                   .....+.+|+...+.... ........  ..++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v  338 (366)
T 3k26_A          259 GKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAI  338 (366)
T ss_dssp             SSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCE
T ss_pred             CCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCce
Confidence            755430           11222211110                   122456667755544322 11111222  4567


Q ss_pred             eeeEEecCCCEEEE
Q 004217          307 LRPSFVRDDERISL  320 (767)
Q Consensus       307 l~psFSpDg~rIva  320 (767)
                      ..++|+||++.++.
T Consensus       339 ~~~~~s~~~~~l~s  352 (366)
T 3k26_A          339 RQTSFSRDSSILIA  352 (366)
T ss_dssp             EEEEECTTSSEEEE
T ss_pred             EEEEeCCCCCeEEE
Confidence            78999999999887

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.91  E-value=2.1e-22  Score=215.38  Aligned_cols=247  Identities=17%  Similarity=0.212  Sum_probs=182.9

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC---eE
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG---SC  141 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg---~~  141 (767)
                      ....++++.++..|++++.|++|++|+....      .+.+|...|.+++|+|++++|++|+.|++|+|||+.++   ++
T Consensus        63 ~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~  142 (345)
T 3fm0_A           63 TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC  142 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE
Confidence            4677888899999999999999999998764      46799999999999999999999999999999999876   45


Q ss_pred             EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEE--Eee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEE
Q 004217          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI--GSR-DFYRPIASIAFHASGELLAVASGHK-LYIW  217 (767)
Q Consensus       142 l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i--~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VW  217 (767)
                      +..+.+|...|.+++|+| ++++|++++.|++|++||+++++..  ..+ .|...|.+++|+|+|++|++++.|+ |++|
T Consensus       143 ~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW  221 (345)
T 3fm0_A          143 VSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW  221 (345)
T ss_dssp             EEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEe
Confidence            677889999999999999 8999999999999999999887643  333 5889999999999999999999766 9999


Q ss_pred             EcCCCccccC------------CeEEec-CCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCC
Q 004217          218 RYNMREETSS------------PRIVLR-TRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPP  279 (767)
Q Consensus       218 Dl~t~~~~~~------------~~~l~~-h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~  279 (767)
                      |.........            ...+.+ |...|++++|+|++..|++++.     +|+++.....            ..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~------------~~  289 (345)
T 3fm0_A          222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDP------------QQ  289 (345)
T ss_dssp             EEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCT------------TS
T ss_pred             ccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCc------------ce
Confidence            9754322110            112222 7889999999999998887765     4443321100            00


Q ss_pred             CeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCC-EEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeee
Q 004217          280 PVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDE-RISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELV  357 (767)
Q Consensus       280 ~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~-rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~  357 (767)
                      +...+.          ..........+..++|+|++. .++.                 ++....+.+|+..+.+...-
T Consensus       290 ~~~~~~----------~~~~~~h~~~V~~v~~~p~~~~~laS-----------------~s~Dg~v~~W~~~~~~~~~~  341 (345)
T 3fm0_A          290 PTFSLT----------AHLHQAHSQDVNCVAWNPKEPGLLAS-----------------CSDDGEVAFWKYQRPEGLHH  341 (345)
T ss_dssp             CCEEEE----------EEETTSSSSCEEEEEECSSSTTEEEE-----------------EETTSCEEEEEECC------
T ss_pred             eeEEEE----------eeecccccCcEeEeEEeCCCceEEEE-----------------cCCCCcEEEEEecCCCCccc
Confidence            001000          001112344667899999986 5544                 23344688999888775443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.91  E-value=2e-22  Score=218.37  Aligned_cols=183  Identities=17%  Similarity=0.209  Sum_probs=158.7

Q ss_pred             ceEEEEEEc-CCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCC-CeEEEEeCCCeEEEEECC
Q 004217           71 SQIFEAGRD-ARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQ  137 (767)
Q Consensus        71 s~~~vA~sd-~g~~LaSgs~DgsIrlWd~~t~-----------~L~gH~~sVtsVaFSpDG-~~LASgs~DGtVrVWDl~  137 (767)
                      ....+++.. ++..|++++.|+.|++|++.++           .+.+|...|.+++|+|++ ++|++++.|++|+|||+.
T Consensus        83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  162 (402)
T 2aq5_A           83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG  162 (402)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT
T ss_pred             CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC
Confidence            467777877 8999999999999999999875           245899999999999998 699999999999999999


Q ss_pred             CCeEEEEE--ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee--cCCCC-eEEEEEcCCCCEEEEE---
Q 004217          138 TGSCLKVL--HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRP-IASIAFHASGELLAVA---  209 (767)
Q Consensus       138 tg~~l~~L--~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l--~h~~~-VtsVafSPdG~~LAsg---  209 (767)
                      +++.+..+  .+|...|.+++|+| ++++|++++.|+.|++||+++++.+..+  .|... +.+++|+|++++|++|   
T Consensus       163 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~  241 (402)
T 2aq5_A          163 TGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSR  241 (402)
T ss_dssp             TTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECT
T ss_pred             CCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccC
Confidence            99999999  89999999999999 9999999999999999999999998886  45554 8999999999999999   


Q ss_pred             ECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          210 SGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       210 Sdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +.++ |++||+++.+... ......|...|.+++|+|++++++++++
T Consensus       242 ~~d~~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~g~  287 (402)
T 2aq5_A          242 MSERQVALWDTKHLEEPL-SLQELDTSSGVLLPFFDPDTNIVYLCGK  287 (402)
T ss_dssp             TCCEEEEEEETTBCSSCS-EEEECCCCSSCEEEEEETTTTEEEEEET
T ss_pred             CCCceEEEEcCccccCCc-eEEeccCCCceeEEEEcCCCCEEEEEEc
Confidence            4444 9999998876422 1223457788999999999998877763

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.91  E-value=1.1e-21  Score=214.80  Aligned_cols=259  Identities=13%  Similarity=0.151  Sum_probs=197.9

Q ss_pred             CcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE
Q 004217           69 SFSQIFEAGRDARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL  142 (767)
Q Consensus        69 s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l  142 (767)
                      +|...+++++. +..|+.+. |++|++||..+++      +.+|...|++|+|+|||++|++|+.|++|+|||+++++++
T Consensus       105 d~y~~~l~wS~-~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~  182 (420)
T 4gga_A          105 DYYLNLVDWSS-GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL  182 (420)
T ss_dssp             CTTCBCEEECT-TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             cccceeEEECC-CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE
Confidence            44455566654 45677765 9999999999873      4578899999999999999999999999999999999999


Q ss_pred             EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE-EEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEc
Q 004217          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRY  219 (767)
Q Consensus       143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~-i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl  219 (767)
                      ..+.+|...+.++.|++   .++++|+.|+.+++||...... +.. ..|...+..+.|+|+|+++++++.|+ |++||.
T Consensus       183 ~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~  259 (420)
T 4gga_A          183 RNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS  259 (420)
T ss_dssp             EEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred             EEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEee
Confidence            99999999999988854   8999999999999999987543 333 45889999999999999999999766 999999


Q ss_pred             CCCcccc-CCeEEecCCCCeEEEEEccCCCeEEEEEe--------eCCcCCCCcceeEeecCCCc---------------
Q 004217          220 NMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTAE--------VNDLDSSESSLTLATSPGYW---------------  275 (767)
Q Consensus       220 ~t~~~~~-~~~~l~~h~~~VtsVaFSPDG~~LlaSgs--------vwdl~s~~~~~~l~t~sG~~---------------  275 (767)
                      .+++... .......|...|.+++|+|++..+++++.        +||+..+.....+.......               
T Consensus       260 ~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~s  339 (420)
T 4gga_A          260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH  339 (420)
T ss_dssp             SCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred             ccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEE
Confidence            8776432 23456778999999999999887776542        78887665544433221110               


Q ss_pred             cCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCC
Q 004217          276 RYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSG  352 (767)
Q Consensus       276 ~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~  352 (767)
                      .+....+.+|+..+........   ....+++.++|+|||.+|+..                 +....+.+||....
T Consensus       340 g~~d~~I~iwd~~~~~~v~~l~---gH~~~V~~l~~spdg~~l~S~-----------------s~D~tvriWdv~~~  396 (420)
T 4gga_A          340 GFAQNQLVIWKYPTMAKVAELK---GHTSRVLSLTMSPDGATVASA-----------------AADETLRLWRCFEL  396 (420)
T ss_dssp             CTTTCCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSCEEEE-----------------ETTTEEEEECCSCS
T ss_pred             ecCCCEEEEEECCCCcEEEEEc---CCCCCEEEEEEcCCCCEEEEE-----------------ecCCeEEEEECCCC
Confidence            1123557777765544333333   356688899999999998862                 22345888987553

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.90  E-value=3e-22  Score=233.83  Aligned_cols=189  Identities=21%  Similarity=0.245  Sum_probs=160.9

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE-
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-  145 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L-  145 (767)
                      ....++++.++..|++++.|++|++||+.++    .+.+|...|.+++|+|++++|++|+.|++|+|||+......... 
T Consensus       432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~  511 (694)
T 3dm0_A          432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE  511 (694)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc
Confidence            4667888899999999999999999999876    46799999999999999999999999999999998765433332 


Q ss_pred             --ccCCCCcEEEEEccCCC--cEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEc
Q 004217          146 --HGHRRTPWVVRFHPLNP--TIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRY  219 (767)
Q Consensus       146 --~gH~~~V~sLafsP~dg--~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl  219 (767)
                        .+|...|.+++|+| ++  ..+++++.|++|++||++++++...+. |...|++++|+|+|++|++++.|+ |++||+
T Consensus       512 ~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~  590 (694)
T 3dm0_A          512 GGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL  590 (694)
T ss_dssp             STTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEET
T ss_pred             CCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence              47889999999999 54  689999999999999999999887764 889999999999999999999766 999999


Q ss_pred             CCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe----eCCcCCCCc
Q 004217          220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE----VNDLDSSES  264 (767)
Q Consensus       220 ~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs----vwdl~s~~~  264 (767)
                      ++++.+.    ...+...|.+++|+|++.+++++..    +||+.....
T Consensus       591 ~~~~~~~----~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~  635 (694)
T 3dm0_A          591 AEGKKLY----SLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSI  635 (694)
T ss_dssp             TTTEEEE----CCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEE
T ss_pred             CCCceEE----EecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCC
Confidence            9887644    2345678999999999986665543    788875444

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.90  E-value=7.1e-23  Score=221.84  Aligned_cols=228  Identities=18%  Similarity=0.182  Sum_probs=180.9

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCC-CCeEEEEeCCCeEEEEECCCC
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTG  139 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----------~L~gH~~sVtsVaFSpD-G~~LASgs~DGtVrVWDl~tg  139 (767)
                      ...+++..++..|++++.|+.+++|++...           .+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.++
T Consensus       111 v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~  190 (380)
T 3iz6_a          111 VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG  190 (380)
T ss_dssp             CCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC
T ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC
Confidence            445677889999999999999999998642           36799999999999996 567999999999999999999


Q ss_pred             eEEEEE-----ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC-CeEEEee-cCCCCeEEEEEcCCCCEEEEEECC
Q 004217          140 SCLKVL-----HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGSR-DFYRPIASIAFHASGELLAVASGH  212 (767)
Q Consensus       140 ~~l~~L-----~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t-g~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd  212 (767)
                      +.+..+     .+|...|.+++|++.++++|++|+.|++|++||++. ++.+..+ .|...|.+++|+|+|++|++++.|
T Consensus       191 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D  270 (380)
T 3iz6_a          191 QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD  270 (380)
T ss_dssp             CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSS
T ss_pred             cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCC
Confidence            998887     689999999999886889999999999999999984 4566554 589999999999999999999976


Q ss_pred             c-EEEEEcCCCccccCCeEEecC-------CCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeec-CCCccCC
Q 004217          213 K-LYIWRYNMREETSSPRIVLRT-------RRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATS-PGYWRYP  278 (767)
Q Consensus       213 ~-V~VWDl~t~~~~~~~~~l~~h-------~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~-sG~~~~p  278 (767)
                      + |++||+++++.+.   .+..+       ...|++++|+|+|+++++++.     +||+...+....+... .+|.. .
T Consensus       271 ~~i~lwd~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~-~  346 (380)
T 3iz6_a          271 GTCRLFDMRTGHQLQ---VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG-R  346 (380)
T ss_dssp             SCEEEEETTTTEEEE---EECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC-C
T ss_pred             CeEEEEECCCCcEEE---EecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCC-c
Confidence            6 9999999887644   22222       235899999999997777654     8888766655544332 34433 1


Q ss_pred             CCeEEEecCCCCCCCceeeccCCCCCCce
Q 004217          279 PPVICMAGAHSSSHPGLAEEVPLITPPFL  307 (767)
Q Consensus       279 ~~~v~l~~~~Ssd~~~L~sg~~~~slpil  307 (767)
                      ...+.+    +++...++++..+..+.+|
T Consensus       347 v~~l~~----s~dg~~l~sgs~D~~i~iW  371 (380)
T 3iz6_a          347 ISCLGL----SSDGSALCTGSWDKNLKIW  371 (380)
T ss_dssp             CCEEEE----CSSSSEEEEECTTSCEEEE
T ss_pred             eEEEEE----CCCCCEEEEeeCCCCEEEE
Confidence            223332    4567778888777666666

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.90  E-value=5e-22  Score=215.76  Aligned_cols=254  Identities=15%  Similarity=0.205  Sum_probs=190.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCC-----CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEE
Q 004217           81 RRGLASWVEAESLHHLRPKYCPL-----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t~~L-----~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sL  155 (767)
                      +..+++++.|+.|++|+..+++.     ..|...|.+++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.++
T Consensus       103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  182 (401)
T 4aez_A          103 NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL  182 (401)
T ss_dssp             TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEE
Confidence            45678888999999999988742     2489999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCcEEEEEeCCCeEEEEECCC-CeEEEe-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEe
Q 004217          156 RFHPLNPTIIASGSLDHEVRLWNAST-AECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVL  232 (767)
Q Consensus       156 afsP~dg~lLaSgS~DGtVrIWDl~t-g~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~  232 (767)
                      +|++   +++++++.|+.|++||++. ...+.. ..|...|.+++|+|++++|++++.++ |++||+++.+...   .+.
T Consensus       183 ~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~---~~~  256 (401)
T 4aez_A          183 SWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF---TKT  256 (401)
T ss_dssp             EEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEE---EEC
T ss_pred             EECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccE---Eec
Confidence            9954   7999999999999999994 444554 45899999999999999999999765 9999999877544   567


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEe--------eCCcCCCCcceeEeecCCCc---------------cCCCCeEEEecCCC
Q 004217          233 RTRRSLRAVHFHPHAAPLLLTAE--------VNDLDSSESSLTLATSPGYW---------------RYPPPVICMAGAHS  289 (767)
Q Consensus       233 ~h~~~VtsVaFSPDG~~LlaSgs--------vwdl~s~~~~~~l~t~sG~~---------------~~p~~~v~l~~~~S  289 (767)
                      .|...|.+++|+|++..++++++        +||+..+.....+.......               ......+.+|+...
T Consensus       257 ~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          257 NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence            89999999999999887877652        88887666544443211100               11234455555433


Q ss_pred             CCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217          290 SSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       290 sd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                      +...... .......++...+|+||+..++..                 +....+.+|+..+++.....
T Consensus       337 ~~~~~~~-~~~~h~~~v~~~~~s~dg~~l~s~-----------------~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          337 SGLTKQV-DIPAHDTRVLYSALSPDGRILSTA-----------------ASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             TEEEEEE-EEECCSSCCCEEEECTTSSEEEEE-----------------CTTSEEEEEECCC-------
T ss_pred             ccceeEE-EecCCCCCEEEEEECCCCCEEEEE-----------------eCCCcEEEEECCCCcccccc
Confidence            2222211 112334566678999999998872                 23346889999887655443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.90  E-value=2.8e-21  Score=205.39  Aligned_cols=265  Identities=13%  Similarity=0.083  Sum_probs=197.0

Q ss_pred             ceEEEEEEc-CCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCCCeEEEEECC-CCCeEEEEeCCCeE
Q 004217           71 SQIFEAGRD-ARRGLASWVEAESLHHLRPKYCPL-----------------SPPPRSTIAAAFSP-DGKTLASTHGDHTV  131 (767)
Q Consensus        71 s~~~vA~sd-~g~~LaSgs~DgsIrlWd~~t~~L-----------------~gH~~sVtsVaFSp-DG~~LASgs~DGtV  131 (767)
                      ....+++.. ++..|++++.|+.|++||..+...                 .+|...|.+++|+| ++++|++++.|+.|
T Consensus        45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  124 (408)
T 4a11_B           45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTL  124 (408)
T ss_dssp             CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEE
T ss_pred             cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeE
Confidence            466788888 999999999999999999987521                 25999999999999 88899999999999


Q ss_pred             EEEECCCCeEEEEEccCCCCcEEEEEccC--CCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCC-EEE
Q 004217          132 KIIDCQTGSCLKVLHGHRRTPWVVRFHPL--NPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGE-LLA  207 (767)
Q Consensus       132 rVWDl~tg~~l~~L~gH~~~V~sLafsP~--dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~-~LA  207 (767)
                      ++||+.+++.+..+. +...+.++.|+|.  ++.++++++.|+.|++||+++++.+..+. |...|.+++|+|+++ +|+
T Consensus       125 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~  203 (408)
T 4a11_B          125 KVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILA  203 (408)
T ss_dssp             EEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEE
T ss_pred             EEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEE
Confidence            999999999888876 7788999999984  23399999999999999999998887765 889999999999998 588


Q ss_pred             EEECCc-EEEEEcCCCcccc-------------CCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004217          208 VASGHK-LYIWRYNMREETS-------------SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL  268 (767)
Q Consensus       208 sgSdd~-V~VWDl~t~~~~~-------------~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l  268 (767)
                      +++.++ |++||+++.....             .......|...|.+++|+|++++|++++.     +|++...+.....
T Consensus       204 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  283 (408)
T 4a11_B          204 TASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVN  283 (408)
T ss_dssp             EEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCC
T ss_pred             EEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceec
Confidence            888665 9999998765211             01112568899999999999998887765     8888765543222


Q ss_pred             eecCCCcc-------------------CCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCC
Q 004217          269 ATSPGYWR-------------------YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGA  329 (767)
Q Consensus       269 ~t~sG~~~-------------------~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs  329 (767)
                      ........                   .....+.+|+...+.......   ....++...+|+||+..++...       
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~-------  353 (408)
T 4a11_B          284 YGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK---GHYKTVDCCVFQSNFQELYSGS-------  353 (408)
T ss_dssp             CCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC---CCSSCEEEEEEETTTTEEEEEE-------
T ss_pred             cccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec---cCCCeEEEEEEcCCCCEEEEEC-------
Confidence            11000000                   012346666655544333322   3445677899999999988722       


Q ss_pred             cccccccccCCceeeeeccCCCCceee
Q 004217          330 TRTQQSLRSSSSVRLLTYSTPSGQYEL  356 (767)
Q Consensus       330 ~~~~~~~~ss~~~~l~~~~~~~~q~~~  356 (767)
                                ....+.+||..+.+...
T Consensus       354 ----------~dg~i~iw~~~~~~~~~  370 (408)
T 4a11_B          354 ----------RDCNILAWVPSLYEPVP  370 (408)
T ss_dssp             ----------TTSCEEEEEECC-----
T ss_pred             ----------CCCeEEEEeCCCCCccC
Confidence                      23468889988766543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.90  E-value=2.3e-22  Score=210.30  Aligned_cols=237  Identities=14%  Similarity=0.128  Sum_probs=176.0

Q ss_pred             ceEEEEEEcC---CCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEE------ECCCCCeEEEEeCCCeEEEEEC
Q 004217           71 SQIFEAGRDA---RRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAA------FSPDGKTLASTHGDHTVKIIDC  136 (767)
Q Consensus        71 s~~~vA~sd~---g~~LaSgs~DgsIrlWd~~t~~-----L~gH~~sVtsVa------FSpDG~~LASgs~DGtVrVWDl  136 (767)
                      ....+++..+   +..|++++.|+.|++||+.+.+     +.+|...|.+++      |++++++|++++.|+.|++||+
T Consensus        67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~  146 (357)
T 3i2n_A           67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDP  146 (357)
T ss_dssp             CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECT
T ss_pred             cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeC
Confidence            3566666666   6999999999999999998753     668999999995      5789999999999999999999


Q ss_pred             CCCe-EEEEEccCCC----CcEEEE----EccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcC---CCC
Q 004217          137 QTGS-CLKVLHGHRR----TPWVVR----FHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHA---SGE  204 (767)
Q Consensus       137 ~tg~-~l~~L~gH~~----~V~sLa----fsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSP---dG~  204 (767)
                      .+++ .+..+..|.+    .|.++.    |+| +++++++++.|+.|++||+++++......+...|.+++|+|   ++.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  225 (357)
T 3i2n_A          147 RQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMN  225 (357)
T ss_dssp             TSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCC
T ss_pred             CCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCC
Confidence            9887 6777866655    788998    678 89999999999999999999999988888999999999999   999


Q ss_pred             EEEEEECCc-EEEEEcCCCccccCCe--EEecCCCCeEEEEEccCCCe-EEEEEe-----eCCcCCCCcceeEeecCCCc
Q 004217          205 LLAVASGHK-LYIWRYNMREETSSPR--IVLRTRRSLRAVHFHPHAAP-LLLTAE-----VNDLDSSESSLTLATSPGYW  275 (767)
Q Consensus       205 ~LAsgSdd~-V~VWDl~t~~~~~~~~--~l~~h~~~VtsVaFSPDG~~-LlaSgs-----vwdl~s~~~~~~l~t~sG~~  275 (767)
                      +|++++.++ |++||+++.+......  ....|...|++++|+|+++. +++++.     +|+++......... ..|..
T Consensus       226 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~g~~  304 (357)
T 3i2n_A          226 KLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD-SEGIE  304 (357)
T ss_dssp             EEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC-TTSCC
T ss_pred             EEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc-CCCCc
Confidence            999999665 9999998876544111  22389999999999999994 444443     67776443321111 01100


Q ss_pred             cCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEE
Q 004217          276 RYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (767)
Q Consensus       276 ~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva  320 (767)
                      .......           ...........++...+|+||++.+++
T Consensus       305 ~~~~~~~-----------~~~~~~~~~~~~v~~~~~s~~~~~l~~  338 (357)
T 3i2n_A          305 MGVAGSV-----------SLLQNVTLSTQPISSLDWSPDKRGLCV  338 (357)
T ss_dssp             CCCCCEE-----------EEEEEEECCSSCEEEEEECSSSTTEEE
T ss_pred             ccccccc-----------ceeeccccCCCCeeEEEEcCCCCeEEE
Confidence            0000000           011111223446778999999999884

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.90  E-value=1.2e-21  Score=215.11  Aligned_cols=247  Identities=18%  Similarity=0.222  Sum_probs=188.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEE
Q 004217           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sL  155 (767)
                      ++..|++++.|+.|++||..++    .+.+|.+.|.+++|++++ +|++|+.|++|++||+++++++..+.+|...|.++
T Consensus       131 ~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l  209 (464)
T 3v7d_B          131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL  209 (464)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEE
Confidence            5679999999999999999887    477999999999999988 99999999999999999999999999999999999


Q ss_pred             EEcc-CCCcEEEEEeCCCeEEEEECCCCeEE-----------------------Ee-ecCCCCeEEEEEcCCCCEEEEEE
Q 004217          156 RFHP-LNPTIIASGSLDHEVRLWNASTAECI-----------------------GS-RDFYRPIASIAFHASGELLAVAS  210 (767)
Q Consensus       156 afsP-~dg~lLaSgS~DGtVrIWDl~tg~~i-----------------------~~-l~h~~~VtsVafSPdG~~LAsgS  210 (767)
                      +|++ .+++++++++.|++|++||+++++..                       .. ..|...+.++  ++++++|++++
T Consensus       210 ~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~  287 (464)
T 3v7d_B          210 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGS  287 (464)
T ss_dssp             EEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEE
T ss_pred             EEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEe
Confidence            9984 26789999999999999999987632                       12 3466677766  67899999999


Q ss_pred             CCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccC-------
Q 004217          211 GHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRY-------  277 (767)
Q Consensus       211 dd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~-------  277 (767)
                      .++ |++||+++++.+.   .+.+|...|.+++|+|+++++++++.     +||++.++....+   .+|...       
T Consensus       288 ~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~  361 (464)
T 3v7d_B          288 YDNTLIVWDVAQMKCLY---ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL---QGHTALVGLLRLS  361 (464)
T ss_dssp             TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEEC
T ss_pred             CCCeEEEEECCCCcEEE---EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE---eCCCCcEEEEEEc
Confidence            666 9999999887655   67789999999999999998877765     7888765544333   333211       


Q ss_pred             --------CCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccC
Q 004217          278 --------PPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYST  349 (767)
Q Consensus       278 --------p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~  349 (767)
                              ....+.+|+......  .....  ........+|++++..+++.                 + ...+.+||.
T Consensus       362 ~~~l~s~s~dg~v~vwd~~~~~~--~~~~~--~~~~~~~~~~~~~~~~l~~~-----------------~-dg~i~iwd~  419 (464)
T 3v7d_B          362 DKFLVSAAADGSIRGWDANDYSR--KFSYH--HTNLSAITTFYVSDNILVSG-----------------S-ENQFNIYNL  419 (464)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCE--EEEEE--CTTCCCEEEEEECSSEEEEE-----------------E-TTEEEEEET
T ss_pred             CCEEEEEeCCCcEEEEECCCCce--eeeec--CCCCccEEEEEeCCCEEEEe-----------------c-CCeEEEEEC
Confidence                    123344455333221  11110  12233356788888877761                 1 236899999


Q ss_pred             CCCceeee
Q 004217          350 PSGQYELV  357 (767)
Q Consensus       350 ~~~q~~~~  357 (767)
                      .+++....
T Consensus       420 ~~g~~~~~  427 (464)
T 3v7d_B          420 RSGKLVHA  427 (464)
T ss_dssp             TTCCEEES
T ss_pred             CCCcEEeh
Confidence            88876654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.90  E-value=3.9e-22  Score=215.03  Aligned_cols=232  Identities=11%  Similarity=0.074  Sum_probs=174.4

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCC
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~  150 (767)
                      ++++.++..|++++.|+.|++||..+.+    +..| ..+....|++++++|++|+.|+.|+|||+.+++....+.+|..
T Consensus        62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~  140 (420)
T 3vl1_A           62 NTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVS  140 (420)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSS
T ss_pred             eeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccC
Confidence            5566788999999999999999998763    3344 4455567899999999999999999999999999888899999


Q ss_pred             CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCC
Q 004217          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSP  228 (767)
Q Consensus       151 ~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~  228 (767)
                      .|.+++|+| ++++|++++.|++|++||+.+++.+..+. |...|.+++|+|++++|++++.++ |++||+++++...  
T Consensus       141 ~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~--  217 (420)
T 3vl1_A          141 EITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH--  217 (420)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE--
T ss_pred             ccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeE--
Confidence            999999999 89999999999999999999998887764 889999999999999999999766 9999999887654  


Q ss_pred             eEEe---cCCCCeEEEE---------------------EccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEE
Q 004217          229 RIVL---RTRRSLRAVH---------------------FHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICM  284 (767)
Q Consensus       229 ~~l~---~h~~~VtsVa---------------------FSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l  284 (767)
                       .+.   .|...|.+++                     |+|++++|++++..                       ..+.+
T Consensus       218 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------------------g~i~i  273 (420)
T 3vl1_A          218 -TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS-----------------------GVITV  273 (420)
T ss_dssp             -EECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT-----------------------SCEEE
T ss_pred             -EeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC-----------------------CeEEE
Confidence             333   2444555555                     46777766555431                       12233


Q ss_pred             ecCCCCCCCceeeccCCCCCCceeeEEecCCC-EEEEeecCCCCCCcccccccccCCceeeeeccCCCCc
Q 004217          285 AGAHSSSHPGLAEEVPLITPPFLRPSFVRDDE-RISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQ  353 (767)
Q Consensus       285 ~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~-rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q  353 (767)
                      |+...+..  +..-......++..++|+|++. .+++.                 +....+.+||..+++
T Consensus       274 ~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~g-----------------~~dg~i~vwd~~~~~  324 (420)
T 3vl1_A          274 HNVFSKEQ--TIQLPSKFTCSCNSLTVDGNNANYIYAG-----------------YENGMLAQWDLRSPE  324 (420)
T ss_dssp             EETTTCCE--EEEECCTTSSCEEEEEECSSCTTEEEEE-----------------ETTSEEEEEETTCTT
T ss_pred             EECCCCce--eEEcccccCCCceeEEEeCCCCCEEEEE-----------------eCCCeEEEEEcCCCc
Confidence            33222111  1111112234566789999999 66652                 223468889887653

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.90  E-value=6e-22  Score=211.27  Aligned_cols=256  Identities=12%  Similarity=0.160  Sum_probs=189.5

Q ss_pred             eEEEEEEcCCC-EEEEEeCCCeEEEEeC----CCCC--------------CC------CCCCCeEEEEECCCCCeEEEEe
Q 004217           72 QIFEAGRDARR-GLASWVEAESLHHLRP----KYCP--------------LS------PPPRSTIAAAFSPDGKTLASTH  126 (767)
Q Consensus        72 ~~~vA~sd~g~-~LaSgs~DgsIrlWd~----~t~~--------------L~------gH~~sVtsVaFSpDG~~LASgs  126 (767)
                      ...++++.++. .|++++.|+.|++|++    .+++              +.      +|...|++++|+|++++|++++
T Consensus        48 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  127 (425)
T 1r5m_A           48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGV  127 (425)
T ss_dssp             CSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEe
Confidence            55677888888 9999999999999999    6543              11      2677999999999999999999


Q ss_pred             CCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC-CCC------------
Q 004217          127 GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-YRP------------  193 (767)
Q Consensus       127 ~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h-~~~------------  193 (767)
                      .|+.|++|| .+++.+..+.+|...|.+++|+| ++++|++++.|+.|++||+.+++.+..+.. ...            
T Consensus       128 ~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (425)
T 1r5m_A          128 ENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGD  205 (425)
T ss_dssp             TTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------
T ss_pred             CCCeEEEEe-CCCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCC
Confidence            999999999 67888999999999999999999 899999999999999999999998887653 333            


Q ss_pred             ---eEEEEEcCCCCEEEEEE-CCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCc
Q 004217          194 ---IASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSES  264 (767)
Q Consensus       194 ---VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~  264 (767)
                         +.+++|+|++. +++++ ++.|++||+++.+...   .+..|...|.+++|+|++++|++++.     +|+++..+.
T Consensus       206 ~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  281 (425)
T 1r5m_A          206 GSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTG---KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS  281 (425)
T ss_dssp             CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCSE---EECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC
T ss_pred             cceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCceee---eeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc
Confidence               89999999876 45555 5559999999886544   67789999999999999997777664     888876655


Q ss_pred             ceeEeecCCCcc---C----------CCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcc
Q 004217          265 SLTLATSPGYWR---Y----------PPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATR  331 (767)
Q Consensus       265 ~~~l~t~sG~~~---~----------p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~  331 (767)
                      ...+....+...   +          ....+.+|+...........   ....++...+|+||+..+++...        
T Consensus       282 ~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~--------  350 (425)
T 1r5m_A          282 QNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSI---VDGVPIFAGRISQDGQKYAVAFM--------  350 (425)
T ss_dssp             SEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEE---CTTCCEEEEEECTTSSEEEEEET--------
T ss_pred             ceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecc---cCCccEEEEEEcCCCCEEEEEEC--------
Confidence            544432222110   0          12344455543332222222   23446668899999998887332        


Q ss_pred             cccccccCCceeeeeccCCCCc
Q 004217          332 TQQSLRSSSSVRLLTYSTPSGQ  353 (767)
Q Consensus       332 ~~~~~~ss~~~~l~~~~~~~~q  353 (767)
                               ...+.+||..+++
T Consensus       351 ---------dg~i~i~~~~~~~  363 (425)
T 1r5m_A          351 ---------DGQVNVYDLKKLN  363 (425)
T ss_dssp             ---------TSCEEEEECHHHH
T ss_pred             ---------CCeEEEEECCCCc
Confidence                     2356777776554

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.90  E-value=6.4e-22  Score=206.85  Aligned_cols=184  Identities=13%  Similarity=0.151  Sum_probs=149.9

Q ss_pred             eEEEEEEc--CCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCC--CCeEEEEeCCCeEEEEECCCCe-
Q 004217           72 QIFEAGRD--ARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGS-  140 (767)
Q Consensus        72 ~~~vA~sd--~g~~LaSgs~DgsIrlWd~~t~~------L~gH~~sVtsVaFSpD--G~~LASgs~DGtVrVWDl~tg~-  140 (767)
                      ...+++..  .+..|++++.|++|++||+.+++      +.+|...|.+++|+|+  +++|++++.|++|++||++++. 
T Consensus        56 V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~  135 (297)
T 2pm7_B           56 VWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT  135 (297)
T ss_dssp             EEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC
T ss_pred             eEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc
Confidence            45566643  48899999999999999998752      4679999999999997  8999999999999999998763 


Q ss_pred             -EEEEEccCCCCcEEEEEccCC------------CcEEEEEeCCCeEEEEECCCCe----EEEee-cCCCCeEEEEEcCC
Q 004217          141 -CLKVLHGHRRTPWVVRFHPLN------------PTIIASGSLDHEVRLWNASTAE----CIGSR-DFYRPIASIAFHAS  202 (767)
Q Consensus       141 -~l~~L~gH~~~V~sLafsP~d------------g~lLaSgS~DGtVrIWDl~tg~----~i~~l-~h~~~VtsVafSPd  202 (767)
                       ....+.+|...|.+++|+|..            +++|++|+.|++|++||+++++    ....+ .|...|.+++|+|+
T Consensus       136 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~  215 (297)
T 2pm7_B          136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT  215 (297)
T ss_dssp             BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred             eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCC
Confidence             245678999999999999931            4799999999999999998765    44444 48899999999999


Q ss_pred             C---CEEEEEECCc-EEEEEcCCCccccCCeEE--ecCCCCeEEEEEccCCCeEEEEEe
Q 004217          203 G---ELLAVASGHK-LYIWRYNMREETSSPRIV--LRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       203 G---~~LAsgSdd~-V~VWDl~t~~~~~~~~~l--~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +   ++|++++.|+ |+|||++..........+  ..|...|.+++|+|+|++|++++.
T Consensus       216 ~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~  274 (297)
T 2pm7_B          216 VLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG  274 (297)
T ss_dssp             CSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred             CCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC
Confidence            5   7999999766 999999875321101122  457889999999999998887765

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.90  E-value=5.3e-22  Score=215.34  Aligned_cols=241  Identities=10%  Similarity=0.114  Sum_probs=174.8

Q ss_pred             eEEEEEEcCC--CEEEEEeCCCeEEEEeCCCCC--------------------------------------------CCC
Q 004217           72 QIFEAGRDAR--RGLASWVEAESLHHLRPKYCP--------------------------------------------LSP  105 (767)
Q Consensus        72 ~~~vA~sd~g--~~LaSgs~DgsIrlWd~~t~~--------------------------------------------L~g  105 (767)
                      ...+++..++  ..+++++.|+.|++|++....                                            +.+
T Consensus        96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (447)
T 3dw8_B           96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA  175 (447)
T ss_dssp             CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred             eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence            4556666666  789999999999999987521                                            368


Q ss_pred             CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC-CeEEEE-------EccCCCCcEEEEEccCCC-cEEEEEeCCCeEEE
Q 004217          106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-GSCLKV-------LHGHRRTPWVVRFHPLNP-TIIASGSLDHEVRL  176 (767)
Q Consensus       106 H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t-g~~l~~-------L~gH~~~V~sLafsP~dg-~lLaSgS~DGtVrI  176 (767)
                      |...|.+++|+|++++|++| .|+.|+|||+++ ++.+..       +.+|...|.+++|+| ++ ++|++|+.|++|++
T Consensus       176 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~i  253 (447)
T 3dw8_B          176 HTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRL  253 (447)
T ss_dssp             CSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEE
T ss_pred             CCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCeEEE
Confidence            99999999999999999998 799999999984 444442       568999999999999 66 99999999999999


Q ss_pred             EECCCCeE----EEeec-CCC------------CeEEEEEcCCCCEEEEEECCcEEEEEcCC-CccccCCeEEecCCCC-
Q 004217          177 WNASTAEC----IGSRD-FYR------------PIASIAFHASGELLAVASGHKLYIWRYNM-REETSSPRIVLRTRRS-  237 (767)
Q Consensus       177 WDl~tg~~----i~~l~-h~~------------~VtsVafSPdG~~LAsgSdd~V~VWDl~t-~~~~~~~~~l~~h~~~-  237 (767)
                      ||+++++.    +..+. +..            .|.+++|+|+|++|++++++.|++||+++ ++.+.   .+..|... 
T Consensus       254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~---~~~~~~~~~  330 (447)
T 3dw8_B          254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVE---TYQVHEYLR  330 (447)
T ss_dssp             EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSC---CEESCGGGT
T ss_pred             EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccc---eeecccccc
Confidence            99999886    55554 443            89999999999999999995599999987 55433   45556421 


Q ss_pred             --------------eEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCcc----CCCCeEEEecCCCCCCCc
Q 004217          238 --------------LRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR----YPPPVICMAGAHSSSHPG  294 (767)
Q Consensus       238 --------------VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~----~p~~~v~l~~~~Ssd~~~  294 (767)
                                    +..++|+|++++|++++.     +||+...+... +.....-..    .....+...  .......
T Consensus       331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  407 (447)
T 3dw8_B          331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCAS--GKRKKDE  407 (447)
T ss_dssp             TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECS--SCCCTTC
T ss_pred             ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCcccccc--CCccccc
Confidence                          334999999998866654     88888655432 221111100    011111111  1112222


Q ss_pred             eeeccCCCCCCceeeEEecCCCEEEE
Q 004217          295 LAEEVPLITPPFLRPSFVRDDERISL  320 (767)
Q Consensus       295 L~sg~~~~slpil~psFSpDg~rIva  320 (767)
                      +.....+...+++.++|+|++..|++
T Consensus       408 ~~~~~~~~~~~i~~~~~~p~~~~la~  433 (447)
T 3dw8_B          408 ISVDSLDFNKKILHTAWHPKENIIAV  433 (447)
T ss_dssp             EEGGGCCTTSCCCEEEECSSSSEEEE
T ss_pred             ccccccccCCceeEEEECCCCCEEEE
Confidence            22333344556778999999999987

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.89  E-value=9e-23  Score=217.21  Aligned_cols=183  Identities=16%  Similarity=0.136  Sum_probs=150.1

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe---
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---  140 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~-------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~---  140 (767)
                      ....+++..++..|++++.|+.|++||+.+++       +.+|...|.+++|+|++++|++++.|+.|++||+++++   
T Consensus        57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  136 (377)
T 3dwl_C           57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW  136 (377)
T ss_dssp             CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC
T ss_pred             eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccce
Confidence            36778888899999999999999999998753       56899999999999999999999999999999999887   


Q ss_pred             EEEEEcc-CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC------------------CCeEEEeecCCCCeEEEEEcC
Q 004217          141 CLKVLHG-HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS------------------TAECIGSRDFYRPIASIAFHA  201 (767)
Q Consensus       141 ~l~~L~g-H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~------------------tg~~i~~l~h~~~VtsVafSP  201 (767)
                      ....+.+ |...|.+++|+| ++++|++++.|++|++||+.                  .++++..+.|...|.+++|+|
T Consensus       137 ~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  215 (377)
T 3dwl_C          137 VSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSP  215 (377)
T ss_dssp             CCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECT
T ss_pred             eeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECC
Confidence            4677887 999999999999 89999999999999999985                  345555568889999999999


Q ss_pred             CCCEEEEEECCc-EEEEEcCCCcccc-CCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          202 SGELLAVASGHK-LYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       202 dG~~LAsgSdd~-V~VWDl~t~~~~~-~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      +|++|++++.++ |++||+++++... ....+..|...|.+++|+|++++|++++
T Consensus       216 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  270 (377)
T 3dwl_C          216 SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY  270 (377)
T ss_dssp             TSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES
T ss_pred             CCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc
Confidence            999999999765 9999999887511 0236778999999999999998665543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.89  E-value=1.4e-20  Score=194.03  Aligned_cols=254  Identities=13%  Similarity=0.144  Sum_probs=188.4

Q ss_pred             EEEEEcCCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           74 FEAGRDARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        74 ~vA~sd~g~~LaSgs~DgsIrlWd~~t~~------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      +++++.++ .|+++ .|++|++||..+++      +.+|...|++++|+|++++|++|+.|++|+|||+++++++..+.+
T Consensus        30 ~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~  107 (318)
T 4ggc_A           30 LVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS  107 (318)
T ss_dssp             CEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecC
Confidence            34555443 66665 49999999999873      457889999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEE-Ee-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCcc
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI-GS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE  224 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i-~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~  224 (767)
                      |...+.++.+.   +.++++++.++.+++|+....... .. ..|...+..+.|++++++|++++.++ |++||+++++.
T Consensus       108 h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  184 (318)
T 4ggc_A          108 HSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG  184 (318)
T ss_dssp             CSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred             ccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence            99998877664   589999999999999999876443 33 46889999999999999999999766 99999988764


Q ss_pred             cc-CCeEEecCCCCeEEEEEccCCCeEEEEEe--------eCCcCCCCcceeEeecCCC---------------ccCCCC
Q 004217          225 TS-SPRIVLRTRRSLRAVHFHPHAAPLLLTAE--------VNDLDSSESSLTLATSPGY---------------WRYPPP  280 (767)
Q Consensus       225 ~~-~~~~l~~h~~~VtsVaFSPDG~~LlaSgs--------vwdl~s~~~~~~l~t~sG~---------------~~~p~~  280 (767)
                      .. .......+...|.++.++|++..++..+.        +|+................               ......
T Consensus       185 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~  264 (318)
T 4ggc_A          185 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQN  264 (318)
T ss_dssp             BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTC
T ss_pred             cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCC
Confidence            33 23345667889999999999887765432        6776654433222211110               001234


Q ss_pred             eEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCC
Q 004217          281 VICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSG  352 (767)
Q Consensus       281 ~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~  352 (767)
                      .+.+|+..++.......   ....++..++|+||+++|+..                 +....+.+||....
T Consensus       265 ~i~iwd~~~~~~~~~l~---gH~~~V~~l~~spdg~~l~S~-----------------s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          265 QLVIWKYPTMAKVAELK---GHTSRVLSLTMSPDGATVASA-----------------AADETLRLWRCFEL  316 (318)
T ss_dssp             CEEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSCEEEE-----------------ETTTEEEEECCSCC
T ss_pred             EEEEEECCCCcEEEEEc---CCCCCEEEEEEcCCCCEEEEE-----------------ecCCeEEEEECCCC
Confidence            57777765544433333   355678889999999998862                 22335778887553

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.89  E-value=5.8e-22  Score=211.62  Aligned_cols=191  Identities=11%  Similarity=0.076  Sum_probs=157.6

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----------CCCCCCCeEEEEECCC----C---CeEEEEeCCCeEEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP----------LSPPPRSTIAAAFSPD----G---KTLASTHGDHTVKII  134 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----------L~gH~~sVtsVaFSpD----G---~~LASgs~DGtVrVW  134 (767)
                      ...+++..  ..|++++.|+.|++|+....+          +.+|...|.+++|+|+    +   ++|++++.|+.|++|
T Consensus        19 i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw   96 (397)
T 1sq9_A           19 IFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFY   96 (397)
T ss_dssp             EEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEE
T ss_pred             eEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEE
Confidence            44555544  899999999999999998764          4589999999999999    9   999999999999999


Q ss_pred             ECCCCeE-----EEEEccC-----CCCcEEEEEc----cCCCcE-EEEEeCCCeEEEEECCC------CeEEE-----ee
Q 004217          135 DCQTGSC-----LKVLHGH-----RRTPWVVRFH----PLNPTI-IASGSLDHEVRLWNAST------AECIG-----SR  188 (767)
Q Consensus       135 Dl~tg~~-----l~~L~gH-----~~~V~sLafs----P~dg~l-LaSgS~DGtVrIWDl~t------g~~i~-----~l  188 (767)
                      |+.+++.     +..+.+|     ...|.+++|+    | ++++ |++++.|+.|++||+++      ++.+.     .+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  175 (397)
T 1sq9_A           97 RITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL  175 (397)
T ss_dssp             EEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEE
T ss_pred             EccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeeccCccee
Confidence            9998887     8889999     5899999999    9 8888 99999999999999998      55544     43


Q ss_pred             --------cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEec---C---CCCeEEEEEccCCCeEEEE
Q 004217          189 --------DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLR---T---RRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       189 --------~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~---h---~~~VtsVaFSPDG~~LlaS  253 (767)
                              .|...|.+++|+|++ +|++++.++ |++||+++.+.+.   .+..   |   ...|.+++|+|++++|+++
T Consensus       176 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~  251 (397)
T 1sq9_A          176 QGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY---NFESQHSMINNSNSIRSVKFSPQGSLLAIA  251 (397)
T ss_dssp             EEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEE---EEECCC---CCCCCEEEEEECSSTTEEEEE
T ss_pred             eeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeE---EEeccccccccCCccceEEECCCCCEEEEE
Confidence                    268899999999999 999998666 9999999887654   5666   8   9999999999999988876


Q ss_pred             Ee--------eCCcCCCCcceeEe
Q 004217          254 AE--------VNDLDSSESSLTLA  269 (767)
Q Consensus       254 gs--------vwdl~s~~~~~~l~  269 (767)
                      +.        +||++.......+.
T Consensus       252 ~~d~~~g~i~i~d~~~~~~~~~~~  275 (397)
T 1sq9_A          252 HDSNSFGCITLYETEFGERIGSLS  275 (397)
T ss_dssp             EEETTEEEEEEEETTTCCEEEEEC
T ss_pred             ecCCCCceEEEEECCCCcccceec
Confidence            53        67777655444443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.89  E-value=1.9e-21  Score=204.97  Aligned_cols=186  Identities=15%  Similarity=0.149  Sum_probs=156.2

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEE-
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-  144 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~-  144 (767)
                      ...+++..++..|++++.|+.|++||..+++      +.+|...|.+++|+|++++|++++.|+.|++||+++++.... 
T Consensus        11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~   90 (372)
T 1k8k_C           11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL   90 (372)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeE
Confidence            4557778899999999999999999998762      568999999999999999999999999999999998875544 


Q ss_pred             -EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE---EEe--ecCCCCeEEEEEcCCCCEEEEEECCc-EEEE
Q 004217          145 -LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---IGS--RDFYRPIASIAFHASGELLAVASGHK-LYIW  217 (767)
Q Consensus       145 -L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~---i~~--l~h~~~VtsVafSPdG~~LAsgSdd~-V~VW  217 (767)
                       +..|...|.+++|+| ++++|++++.|+.|++||+..++.   ...  ..|...|.+++|+|++++|++++.++ |++|
T Consensus        91 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~  169 (372)
T 1k8k_C           91 VILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF  169 (372)
T ss_dssp             ECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEE
Confidence             467999999999999 899999999999999999998763   222  34788999999999999999999665 9999


Q ss_pred             EcC------------------CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004217          218 RYN------------------MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (767)
Q Consensus       218 Dl~------------------t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s  261 (767)
                      |++                  .++..   ..+..|...|.+++|+|++++|++++.     +||++.
T Consensus       170 d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  233 (372)
T 1k8k_C          170 SAYIKEVEERPAPTPWGSKMPFGELM---FESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK  233 (372)
T ss_dssp             ECCCTTTSCCCCCBTTBSCCCTTCEE---EECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             Ecccccccccccccccccccchhhhe---EecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            975                  23322   245578999999999999997777654     555553

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.89  E-value=7.6e-22  Score=211.62  Aligned_cols=231  Identities=16%  Similarity=0.203  Sum_probs=173.4

Q ss_pred             eCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC----CeEEEEEccCCCCcEEEEE
Q 004217           88 VEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT----GSCLKVLHGHRRTPWVVRF  157 (767)
Q Consensus        88 s~DgsIrlWd~~t~~------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t----g~~l~~L~gH~~~V~sLaf  157 (767)
                      +.|+.|++|+..+..      ...|...|.+++|+|++++|++++.|+.|+|||+.+    .+.+..+.+|...|.+++|
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~  121 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKF  121 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEE
T ss_pred             CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEE
Confidence            899999999998652      246889999999999999999999999999999987    4578889999999999999


Q ss_pred             ccCCCcEEEEEeCCCeEEEEECCCCe------EEEe----ecCCCCeEEEEEcCC-CCEEEEEECCc-EEEEEcCCCccc
Q 004217          158 HPLNPTIIASGSLDHEVRLWNASTAE------CIGS----RDFYRPIASIAFHAS-GELLAVASGHK-LYIWRYNMREET  225 (767)
Q Consensus       158 sP~dg~lLaSgS~DGtVrIWDl~tg~------~i~~----l~h~~~VtsVafSPd-G~~LAsgSdd~-V~VWDl~t~~~~  225 (767)
                      +|+++++|++++.|++|++||+.+++      ....    ..|...|.+++|+|+ +.+|++++.++ |++||+++++..
T Consensus       122 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  201 (416)
T 2pm9_A          122 NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV  201 (416)
T ss_dssp             CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE
T ss_pred             cCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc
Confidence            99448999999999999999999886      3333    357889999999999 68999988666 999999988764


Q ss_pred             cCCeEEecC------CCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCC-CCceeec
Q 004217          226 SSPRIVLRT------RRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSS-HPGLAEE  298 (767)
Q Consensus       226 ~~~~~l~~h------~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd-~~~L~sg  298 (767)
                      .   .+..+      ...|.+++|+|++..+++++......                   ..+.+|+..... ...... 
T Consensus       202 ~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~-------------------~~i~~~d~~~~~~~~~~~~-  258 (416)
T 2pm9_A          202 I---HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDND-------------------PSILIWDLRNANTPLQTLN-  258 (416)
T ss_dssp             E---EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSS-------------------CCCCEEETTSTTSCSBCCC-
T ss_pred             e---EEeccccccccCCceEEEEECCCCCCEEEEEECCCCC-------------------ceEEEEeCCCCCCCcEEee-
Confidence            4   44444      78899999999986555555422100                   022333322211 111111 


Q ss_pred             cCCCCCCceeeEEec-CCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217          299 VPLITPPFLRPSFVR-DDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS  359 (767)
Q Consensus       299 ~~~~slpil~psFSp-Dg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~  359 (767)
                       .....++..++|+| |+..++...                 ....+.+||..+++....+.
T Consensus       259 -~~~~~~v~~~~~s~~~~~~l~s~~-----------------~dg~v~~wd~~~~~~~~~~~  302 (416)
T 2pm9_A          259 -QGHQKGILSLDWCHQDEHLLLSSG-----------------RDNTVLLWNPESAEQLSQFP  302 (416)
T ss_dssp             -SCCSSCEEEEEECSSCSSCEEEEE-----------------SSSEEEEECSSSCCEEEEEE
T ss_pred             -cCccCceeEEEeCCCCCCeEEEEe-----------------CCCCEEEeeCCCCccceeec
Confidence             02334566899999 777777622                 23468899998887766663

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.89  E-value=3e-22  Score=229.41  Aligned_cols=184  Identities=9%  Similarity=0.010  Sum_probs=151.6

Q ss_pred             eEEEEEEcC------CCEEEEEeCCCeEEEEeCCCC---------------CCCCCCCCeEEEEECCCCCeEEEEeCCCe
Q 004217           72 QIFEAGRDA------RRGLASWVEAESLHHLRPKYC---------------PLSPPPRSTIAAAFSPDGKTLASTHGDHT  130 (767)
Q Consensus        72 ~~~vA~sd~------g~~LaSgs~DgsIrlWd~~t~---------------~L~gH~~sVtsVaFSpDG~~LASgs~DGt  130 (767)
                      ...+++...      +..|++++.|++|++||+...               .+.+|...|++++|+++ ..|++|+.||+
T Consensus       210 V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~Dgt  288 (524)
T 2j04_B          210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGF  288 (524)
T ss_dssp             EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSE
T ss_pred             EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCE
Confidence            444556543      579999999999999999754               24579999999999986 48999999999


Q ss_pred             EEEEECCCCe-EEEEEccCCCCcEEE--EEccCCC-cEEEEEeCCCeEEEEECCCCeEEEeec-CC--CCeEEEEEcCCC
Q 004217          131 VKIIDCQTGS-CLKVLHGHRRTPWVV--RFHPLNP-TIIASGSLDHEVRLWNASTAECIGSRD-FY--RPIASIAFHASG  203 (767)
Q Consensus       131 VrVWDl~tg~-~l~~L~gH~~~V~sL--afsP~dg-~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~--~~VtsVafSPdG  203 (767)
                      |++||++++. ....+.+|...|.+|  .|+| ++ ++|+|++.|++|+|||++++++...+. |.  ..|.+++|+|++
T Consensus       289 V~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~  367 (524)
T 2j04_B          289 VAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQI  367 (524)
T ss_dssp             EEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTT
T ss_pred             EEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCc
Confidence            9999999764 456789999999999  4667 66 899999999999999999887665542 33  358899999999


Q ss_pred             CEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcC
Q 004217          204 ELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLD  260 (767)
Q Consensus       204 ~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~  260 (767)
                      +.|++++++. |++||++++....   .+.+|...|++|+|+|+|++|++++.     +|++.
T Consensus       368 ~~l~s~~~d~tv~lwd~~~~~~~~---~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          368 YSYIYSDGASSLRAVPSRAAFAVH---PLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             TEEEEECSSSEEEEEETTCTTCCE---EEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred             CeEEEeCCCCcEEEEECcccccce---eeecCCCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence            9999988665 9999999877543   67789999999999999998777665     66654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.89  E-value=9.9e-23  Score=222.29  Aligned_cols=235  Identities=11%  Similarity=0.101  Sum_probs=157.3

Q ss_pred             EEEcCCCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECC--------CCCeEEEEeCCCeEEEEECCC
Q 004217           76 AGRDARRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSP--------DGKTLASTHGDHTVKIIDCQT  138 (767)
Q Consensus        76 A~sd~g~~LaSgs~DgsIrlWd~~t~---------~L~gH~~sVtsVaFSp--------DG~~LASgs~DGtVrVWDl~t  138 (767)
                      ....++..|++++.|++|++||...+         .+.+|.+.|++++|+|        |+++||+|+.|++|+|||+.+
T Consensus        96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~  175 (393)
T 4gq1_A           96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD  175 (393)
T ss_dssp             -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred             ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence            34456678999999999999998765         3789999999999997        899999999999999999999


Q ss_pred             CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe--------------------------ecCCC
Q 004217          139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--------------------------RDFYR  192 (767)
Q Consensus       139 g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~--------------------------l~h~~  192 (767)
                      +.++..+.+|...|.+++|+|.+.++|++++.|++|++||+++++....                          ..|..
T Consensus       176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  255 (393)
T 4gq1_A          176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS  255 (393)
T ss_dssp             TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred             CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence            9888888899999999999995556899999999999999998765332                          13556


Q ss_pred             CeEEEEEc-CCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCC--CcceeE
Q 004217          193 PIASIAFH-ASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSS--ESSLTL  268 (767)
Q Consensus       193 ~VtsVafS-PdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~--~~~~~l  268 (767)
                      .+.++.|+ ++|+.|++++.++ +++||+.......   .+..|...+..+.+.|+.+.+............  .....+
T Consensus       256 ~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (393)
T 4gq1_A          256 SLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYN---EISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFA  332 (393)
T ss_dssp             SCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEE
T ss_pred             cceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCc---eEeeecCccccEEEccccccccccCcceeEEEccCCCCEEE
Confidence            78889886 8999999999666 9999998876544   455666667777776665422111110000000  000011


Q ss_pred             eecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEe
Q 004217          269 ATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (767)
Q Consensus       269 ~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~  321 (767)
                      . ..+    ....+.+|+...+.......+   ...++..++|+|||+.|++.
T Consensus       333 ~-sgs----~Dg~V~lwd~~~~~~~~~~~~---~~~~V~svafspdG~~LA~a  377 (393)
T 4gq1_A          333 T-AHS----QHGLIQLINTYEKDSNSIPIQ---LGMPIVDFCWHQDGSHLAIA  377 (393)
T ss_dssp             E-EET----TTTEEEEEETTCTTCCEEEEE---CSSCEEEEEECTTSSEEEEE
T ss_pred             E-EEC----CCCEEEEEECCCCcEEEEecC---CCCcEEEEEEcCCCCEEEEE
Confidence            1 000    124577787666655444333   34477889999999999884

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.89  E-value=2.2e-21  Score=202.86  Aligned_cols=220  Identities=15%  Similarity=0.184  Sum_probs=168.4

Q ss_pred             ceEEEEEEcC---CCEEEEEeCCCeEEEEeCCC-C-----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE
Q 004217           71 SQIFEAGRDA---RRGLASWVEAESLHHLRPKY-C-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC  141 (767)
Q Consensus        71 s~~~vA~sd~---g~~LaSgs~DgsIrlWd~~t-~-----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~  141 (767)
                      ...+++++.+   +..|++++.|+.|++||+.+ +     .+.+|...|.+++|+|++++|++++.|+.|++||+++++.
T Consensus        41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  120 (368)
T 3mmy_A           41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA  120 (368)
T ss_dssp             CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc
Confidence            3666777777   69999999999999999986 2     3568999999999999999999999999999999999987


Q ss_pred             EEEEccCCCCcEEEEE--ccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCC----------------------------
Q 004217          142 LKVLHGHRRTPWVVRF--HPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY----------------------------  191 (767)
Q Consensus       142 l~~L~gH~~~V~sLaf--sP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~----------------------------  191 (767)
                      +. +.+|...|.+++|  +| ++++|++++.|+.|++||+++++.+..+...                            
T Consensus       121 ~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  198 (368)
T 3mmy_A          121 IQ-IAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLE  198 (368)
T ss_dssp             EE-EEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECS
T ss_pred             ee-eccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEec
Confidence            66 5679999999999  88 8899999999999999999988765554422                            


Q ss_pred             --------------CCeEEEEEcCCCCE----EEEEECCc-EEEEEcCCCccccCCeEEecCCC------------CeEE
Q 004217          192 --------------RPIASIAFHASGEL----LAVASGHK-LYIWRYNMREETSSPRIVLRTRR------------SLRA  240 (767)
Q Consensus       192 --------------~~VtsVafSPdG~~----LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~------------~Vts  240 (767)
                                    ..+.++++.++...    +++++.++ |++||++..........+..|..            .|++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  278 (368)
T 3mmy_A          199 NQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNG  278 (368)
T ss_dssp             SSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEE
T ss_pred             cccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEE
Confidence                          23344555444433    88888665 99999988754233445666655            7999


Q ss_pred             EEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCC
Q 004217          241 VHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDD  315 (767)
Q Consensus       241 VaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg  315 (767)
                      ++|+|++++|++++.     +||+..++.   +....                            ....++..++|+||+
T Consensus       279 ~~~sp~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~----------------------------~~~~~v~~~~~s~~g  327 (368)
T 3mmy_A          279 IAFHPVHGTLATVGSDGRFSFWDKDARTK---LKTSE----------------------------QLDQPISACCFNHNG  327 (368)
T ss_dssp             EEECTTTCCEEEEETTSCEEEEETTTTEE---EEECC----------------------------CCSSCEEEEEECTTS
T ss_pred             EEEecCCCEEEEEccCCeEEEEECCCCcE---EEEec----------------------------CCCCCceEEEECCCC
Confidence            999999998877764     455443221   11111                            123456678999999


Q ss_pred             CEEEEeec
Q 004217          316 ERISLQHT  323 (767)
Q Consensus       316 ~rIva~~~  323 (767)
                      ..|+....
T Consensus       328 ~~l~~~s~  335 (368)
T 3mmy_A          328 NIFAYASS  335 (368)
T ss_dssp             SCEEEEEC
T ss_pred             CeEEEEec
Confidence            99998544

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.89  E-value=5.7e-22  Score=207.57  Aligned_cols=200  Identities=17%  Similarity=0.204  Sum_probs=165.5

Q ss_pred             eEEEEEEcC----CCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEE
Q 004217           72 QIFEAGRDA----RRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCL  142 (767)
Q Consensus        72 ~~~vA~sd~----g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l  142 (767)
                      ...+++..+    +..|++++.|+.|++||..+++    +.+|...|.+++|+| ++++|++++.|+.|++||+++++.+
T Consensus        72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  151 (366)
T 3k26_A           72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV  151 (366)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE
Confidence            555666666    6799999999999999998763    668999999999999 9999999999999999999999999


Q ss_pred             EEE---ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-----------------------------C
Q 004217          143 KVL---HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-----------------------------F  190 (767)
Q Consensus       143 ~~L---~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-----------------------------h  190 (767)
                      ..+   .+|...|.+++|+| ++++|++++.|+.|++||+++++....+.                             |
T Consensus       152 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (366)
T 3k26_A          152 AIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH  230 (366)
T ss_dssp             EEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred             EEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence            888   78999999999999 89999999999999999999876543322                             8


Q ss_pred             CCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccc-----------cCCeEEecCCCCeEEEEEccC--CCeEEEEEe-
Q 004217          191 YRPIASIAFHASGELLAVASGHK-LYIWRYNMREET-----------SSPRIVLRTRRSLRAVHFHPH--AAPLLLTAE-  255 (767)
Q Consensus       191 ~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~-----------~~~~~l~~h~~~VtsVaFSPD--G~~LlaSgs-  255 (767)
                      ...|.+++|+  +++|++++.++ |++||+++....           .....+..|...|++++|+|+  +++|++++. 
T Consensus       231 ~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d  308 (366)
T 3k26_A          231 RNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV  308 (366)
T ss_dssp             SSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTT
T ss_pred             cceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecC
Confidence            8899999998  77999998655 999999876531           112356678889999999999  997777654 


Q ss_pred             ----eCCcCCCCcce-eEeecCCC
Q 004217          256 ----VNDLDSSESSL-TLATSPGY  274 (767)
Q Consensus       256 ----vwdl~s~~~~~-~l~t~sG~  274 (767)
                          +|++...+... ......++
T Consensus       309 g~i~vwd~~~~~~~~~~~~~~~~~  332 (366)
T 3k26_A          309 GKLYVWDLEVEDPHKAKCTTLTHH  332 (366)
T ss_dssp             SCEEEEECCSSSGGGCEEEEECCT
T ss_pred             CcEEEEECCCCCCccccceEEccc
Confidence                88888766543 33444554

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.89  E-value=3.7e-21  Score=200.19  Aligned_cols=189  Identities=16%  Similarity=0.156  Sum_probs=161.4

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCC--CeEEEEeCCCeEEEEECCCCeEEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDG--KTLASTHGDHTVKIIDCQTGSCLKV  144 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSpDG--~~LASgs~DGtVrVWDl~tg~~l~~  144 (767)
                      .........+..+++++.|+.+++||....     .+.+|...|.+++|++++  .++++++.|+.|++||+.+++.+..
T Consensus       131 ~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~  210 (340)
T 4aow_A          131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN  210 (340)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             eeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE
Confidence            445556677889999999999999998764     467899999999999864  5788999999999999999999999


Q ss_pred             EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCcc
Q 004217          145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREE  224 (767)
Q Consensus       145 L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~  224 (767)
                      +.+|.+.|.+++|+| ++++|++|+.|++|++||+++.+++..+.+...|.+++|+|++.+++.+.++.|++||+++...
T Consensus       211 ~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~  289 (340)
T 4aow_A          211 HIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKII  289 (340)
T ss_dssp             ECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEE
T ss_pred             ecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeE
Confidence            999999999999999 9999999999999999999999999999988999999999999988888888899999987754


Q ss_pred             ccC------CeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004217          225 TSS------PRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (767)
Q Consensus       225 ~~~------~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s  261 (767)
                      ...      ......|...|++++|+|||++|++++.     +|++.+
T Consensus       290 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          290 VDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             EEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             EEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence            321      1223468899999999999998877664     555553

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.5e-21  Score=206.40  Aligned_cols=193  Identities=12%  Similarity=0.128  Sum_probs=163.9

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ....++++.++..|++++.|+.|++|+....   .+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  189 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFEL  189 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeec
Confidence            4777888899999999999999999995443   4778999999999999999999999999999999999999999988


Q ss_pred             CCCC---------------cEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEEC
Q 004217          148 HRRT---------------PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG  211 (767)
Q Consensus       148 H~~~---------------V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSd  211 (767)
                      +...               +.++.|+| + ..+++++.|+.|++||+++++.+..+ .|...|.+++|+|++++|++++.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  267 (425)
T 1r5m_A          190 KETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD  267 (425)
T ss_dssp             C---------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred             cccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC
Confidence            8777               99999999 4 56889999999999999998887775 48899999999999999999996


Q ss_pred             Cc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEe
Q 004217          212 HK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA  269 (767)
Q Consensus       212 d~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~  269 (767)
                      ++ |++||+++.+...   .+..|...|.+++|+|++ .+++++.     +|+++.......+.
T Consensus       268 d~~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~  327 (425)
T 1r5m_A          268 DGTLRIWHGGNGNSQN---CFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI  327 (425)
T ss_dssp             TSCEEEECSSSBSCSE---EECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEECCCCccce---EecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc
Confidence            65 9999999876544   667799999999999999 5666554     88887655444443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.89  E-value=1.8e-21  Score=203.11  Aligned_cols=244  Identities=9%  Similarity=-0.006  Sum_probs=188.1

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCCCC-eEEEEeCCCeEEEEEC-CCCeE
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDC-QTGSC  141 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~-------L~gH~~sVtsVaFSpDG~-~LASgs~DGtVrVWDl-~tg~~  141 (767)
                      ....+++..++..|++++.|+.|++|+.....       +.+|...|.+++|+|+++ +|++|+.|+.|++||+ .+++.
T Consensus        13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~   92 (342)
T 1yfq_A           13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF   92 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce
Confidence            36667788899999999999999999987653       448999999999999999 9999999999999999 87764


Q ss_pred             EEEEcc--CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC---------CeEEEeecCCCCeEEEEEcCCCCEEEEEE
Q 004217          142 LKVLHG--HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST---------AECIGSRDFYRPIASIAFHASGELLAVAS  210 (767)
Q Consensus       142 l~~L~g--H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t---------g~~i~~l~h~~~VtsVafSPdG~~LAsgS  210 (767)
                       ..+.+  |...|.+++|+|  +++|++++.|+.|++||+++         ++++..+.+...|.+++|+|++  +++++
T Consensus        93 -~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~  167 (342)
T 1yfq_A           93 -QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGM  167 (342)
T ss_dssp             -EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEE
T ss_pred             -EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEe
Confidence             77888  999999999999  78999999999999999998         7777777899999999999988  77777


Q ss_pred             CC-cEEEEEcCC-CccccCCeEEecCCCCeEEEEEcc-CCCeEEEEEe-----eCCcCCC------CcceeEeecCCCcc
Q 004217          211 GH-KLYIWRYNM-REETSSPRIVLRTRRSLRAVHFHP-HAAPLLLTAE-----VNDLDSS------ESSLTLATSPGYWR  276 (767)
Q Consensus       211 dd-~V~VWDl~t-~~~~~~~~~l~~h~~~VtsVaFSP-DG~~LlaSgs-----vwdl~s~------~~~~~l~t~sG~~~  276 (767)
                      .+ .|++||+++ ..... ......|...|.+++|+| +++++++++.     +|+++..      .....+   .++..
T Consensus       168 ~d~~i~i~d~~~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~---~~~~~  243 (342)
T 1yfq_A          168 NNSQVQWFRLPLCEDDNG-TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF---RCHRL  243 (342)
T ss_dssp             STTEEEEEESSCCTTCCC-EEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE---ECCCC
T ss_pred             CCCeEEEEECCccccccc-eeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee---ecccc
Confidence            55 599999998 54321 234556788999999999 9997777664     5555543      111111   11100


Q ss_pred             CCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceee
Q 004217          277 YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYEL  356 (767)
Q Consensus       277 ~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~  356 (767)
                                    ..     .......++...+|+||++.+++..                 ....+.+||..+++...
T Consensus       244 --------------~~-----~~~~~~~~i~~~~~s~~~~~l~~~~-----------------~dg~i~vwd~~~~~~~~  287 (342)
T 1yfq_A          244 --------------NL-----KDTNLAYPVNSIEFSPRHKFLYTAG-----------------SDGIISCWNLQTRKKIK  287 (342)
T ss_dssp             --------------CT-----TCCSSCCCEEEEEECTTTCCEEEEE-----------------TTSCEEEEETTTTEEEE
T ss_pred             --------------cc-----cccccceeEEEEEEcCCCCEEEEec-----------------CCceEEEEcCccHhHhh
Confidence                          00     0012234666789999999888722                 23357889998887766


Q ss_pred             eec
Q 004217          357 VLS  359 (767)
Q Consensus       357 ~~~  359 (767)
                      .+.
T Consensus       288 ~~~  290 (342)
T 1yfq_A          288 NFA  290 (342)
T ss_dssp             ECC
T ss_pred             hhh
Confidence            653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.89  E-value=3.3e-21  Score=226.04  Aligned_cols=237  Identities=14%  Similarity=0.146  Sum_probs=191.9

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~  146 (767)
                      ....++++.++..|++++.|+.|++||..++    .+.+|...|.+++|+|++++|++++.|+.|+|||+.+++.+..+.
T Consensus        15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~   94 (814)
T 3mkq_A           15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE   94 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence            3677888999999999999999999999876    466899999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC-eEEEee-cCCCCeEEEEEcC-CCCEEEEEECCc-EEEEEcCCC
Q 004217          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSR-DFYRPIASIAFHA-SGELLAVASGHK-LYIWRYNMR  222 (767)
Q Consensus       147 gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg-~~i~~l-~h~~~VtsVafSP-dG~~LAsgSdd~-V~VWDl~t~  222 (767)
                      +|.+.|.+++|+| ++++|++++.|++|++||+.++ .....+ .|...|.+++|+| ++++|++++.++ |++||+++.
T Consensus        95 ~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~  173 (814)
T 3mkq_A           95 AHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS  173 (814)
T ss_dssp             CCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS
T ss_pred             cCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            9999999999999 8999999999999999999987 555554 5889999999999 888999999666 999999877


Q ss_pred             ccccCCeEEec-CCCCeEEEEEcc--CCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCc
Q 004217          223 EETSSPRIVLR-TRRSLRAVHFHP--HAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPG  294 (767)
Q Consensus       223 ~~~~~~~~l~~-h~~~VtsVaFSP--DG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~  294 (767)
                      ....   .... +...+.+++|+|  ++.++++++.     +|++.....   +....+                     
T Consensus       174 ~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~---------------------  226 (814)
T 3mkq_A          174 TPNF---TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC---VATLEG---------------------  226 (814)
T ss_dssp             SCSE---EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE---EEEEEC---------------------
T ss_pred             ccee---EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE---EEEEcC---------------------
Confidence            6533   3444 458999999999  8887776653     454443221   111111                     


Q ss_pred             eeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217          295 LAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS  359 (767)
Q Consensus       295 L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~  359 (767)
                             ...++..++|+||+..+++..                 ....+.+||..+++....+.
T Consensus       227 -------~~~~v~~~~~~~~~~~l~~~~-----------------~dg~v~vwd~~~~~~~~~~~  267 (814)
T 3mkq_A          227 -------HMSNVSFAVFHPTLPIIISGS-----------------EDGTLKIWNSSTYKVEKTLN  267 (814)
T ss_dssp             -------CSSCEEEEEECSSSSEEEEEE-----------------TTSCEEEEETTTCSEEEEEC
T ss_pred             -------CCCCEEEEEEcCCCCEEEEEe-----------------CCCeEEEEECCCCcEEEEee
Confidence                   123455788999999888732                 22357889988887777664

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.88  E-value=9.4e-21  Score=198.07  Aligned_cols=250  Identities=14%  Similarity=0.186  Sum_probs=182.4

Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC
Q 004217          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t  181 (767)
                      ++.+|.+.|++++|+|++++|++++.|+.|+|||+.+++.+..+.+|...|.+++|+| ++++|++++.|++|++||+.+
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~  105 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSN  105 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTT
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Confidence            3668999999999999999999999999999999999999999999999999999999 899999999999999999999


Q ss_pred             CeEEEeecCCCCeEEEEEcCCCCEEEEEECC-----c-EEEEEcCCCcccc--------CCeEEecCCC--CeEEEEEcc
Q 004217          182 AECIGSRDFYRPIASIAFHASGELLAVASGH-----K-LYIWRYNMREETS--------SPRIVLRTRR--SLRAVHFHP  245 (767)
Q Consensus       182 g~~i~~l~h~~~VtsVafSPdG~~LAsgSdd-----~-V~VWDl~t~~~~~--------~~~~l~~h~~--~VtsVaFSP  245 (767)
                      ++++..+.+...+.+++|+|++++|++++.+     + |++||++......        ....+..|..  .+.+++|+|
T Consensus       106 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (369)
T 3zwl_B          106 GQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST  185 (369)
T ss_dssp             CCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG
T ss_pred             CcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC
Confidence            9999998899999999999999999999875     4 9999998765322        1234445555  899999999


Q ss_pred             CCCeEEEEEe-----eCCcCC-CCcceeEeecCCCcc---C-----------CCCeEEEecCCCCCCCceeeccCCCCCC
Q 004217          246 HAAPLLLTAE-----VNDLDS-SESSLTLATSPGYWR---Y-----------PPPVICMAGAHSSSHPGLAEEVPLITPP  305 (767)
Q Consensus       246 DG~~LlaSgs-----vwdl~s-~~~~~~l~t~sG~~~---~-----------p~~~v~l~~~~Ssd~~~L~sg~~~~slp  305 (767)
                      +++++++++.     +||++. ......+....+...   +           ....+.+|+...........    ...+
T Consensus       186 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~  261 (369)
T 3zwl_B          186 KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE----TDCP  261 (369)
T ss_dssp             GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSC
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----CCCC
Confidence            9998877654     788775 333222222211100   0           12334445543332222222    2345


Q ss_pred             ceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217          306 FLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS  359 (767)
Q Consensus       306 il~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~  359 (767)
                      +....|+|++..+++...+.........   .......+.+||..+++....+.
T Consensus       262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~i~~~d~~~~~~~~~~~  312 (369)
T 3zwl_B          262 LNTAVITPLKEFIILGGGQEAKDVTTTS---ANEGKFEARFYHKIFEEEIGRVQ  312 (369)
T ss_dssp             EEEEEECSSSSEEEEEECCC----------------CEEEEEETTTCCEEEEEE
T ss_pred             ceeEEecCCCceEEEeecCCCceEEEEe---cCCCcceeEEEecCCCcchhhee
Confidence            5578999999999986654432221111   11223368899998888777664

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.88  E-value=8.6e-22  Score=214.61  Aligned_cols=260  Identities=11%  Similarity=0.085  Sum_probs=189.3

Q ss_pred             cceEEEEEEc-CCCEEEEEeCCCeEEEEeCCC---C-----CCC-CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECC--
Q 004217           70 FSQIFEAGRD-ARRGLASWVEAESLHHLRPKY---C-----PLS-PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ--  137 (767)
Q Consensus        70 ~s~~~vA~sd-~g~~LaSgs~DgsIrlWd~~t---~-----~L~-gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~--  137 (767)
                      .....+++.. ++..|++++.|++|++||...   +     .+. +|...|.+++|+|++++|++|+.|++|+|||++  
T Consensus        64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~  143 (437)
T 3gre_A           64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHY  143 (437)
T ss_dssp             SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEE
T ss_pred             CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccc
Confidence            3477788888 899999999999999999876   2     122 699999999999999999999999999999995  


Q ss_pred             -CCeEEEEEcc------------CCCCcEEEE--EccCCCcEEEEEeCCCeEEEEECCCCeEEEeec---CCCCeEEEEE
Q 004217          138 -TGSCLKVLHG------------HRRTPWVVR--FHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAF  199 (767)
Q Consensus       138 -tg~~l~~L~g------------H~~~V~sLa--fsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~---h~~~VtsVaf  199 (767)
                       +++.+..+.+            +...+.++.  +++ ++++|++++.|++|++||+++++++..+.   |...|++++|
T Consensus       144 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~  222 (437)
T 3gre_A          144 QQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICI  222 (437)
T ss_dssp             EETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEE
T ss_pred             cCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEE
Confidence             5555444332            445566666  556 78999999999999999999999988864   6789999999


Q ss_pred             cCCCCEEEEEECCc-EEEEEcCCCccccCCeEE-ecCCCCeEEEEEcc----CCCeEEEEEe-----eCCcCCCCcceeE
Q 004217          200 HASGELLAVASGHK-LYIWRYNMREETSSPRIV-LRTRRSLRAVHFHP----HAAPLLLTAE-----VNDLDSSESSLTL  268 (767)
Q Consensus       200 SPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l-~~h~~~VtsVaFSP----DG~~LlaSgs-----vwdl~s~~~~~~l  268 (767)
                      +|++++|++|+.++ |++||+++++.+.   .+ ..|...|++++|+|    ++.+|++++.     +||++.+.....+
T Consensus       223 s~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  299 (437)
T 3gre_A          223 DEECCVLILGTTRGIIDIWDIRFNVLIR---SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAF  299 (437)
T ss_dssp             CTTSCEEEEEETTSCEEEEETTTTEEEE---EEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEE
T ss_pred             CCCCCEEEEEcCCCeEEEEEcCCccEEE---EEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEE
Confidence            99999999999776 9999999877544   33 37788999996665    5666665543     8888876655444


Q ss_pred             eecCCCccCCCCeEEEecCCCCCCCceeecc---CCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeee
Q 004217          269 ATSPGYWRYPPPVICMAGAHSSSHPGLAEEV---PLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLL  345 (767)
Q Consensus       269 ~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~---~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~  345 (767)
                      ....+.   +. .+.+    .++...+....   .....++...+|+ ++..++.                 ++....+.
T Consensus       300 ~~~~~~---~~-~~~~----~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s-----------------~~~d~~i~  353 (437)
T 3gre_A          300 INSDEQ---PS-MEHF----LPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT-----------------DEATSSIV  353 (437)
T ss_dssp             ESSSSC---CC-GGGG----SCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE-----------------EGGGTEEE
T ss_pred             EcCCCC---Cc-ccee----cccccccccceecccccCCceEEEEEC-CceEEEe-----------------cCCCCeEE
Confidence            433221   11 0110    11111111000   1123345678899 7766665                 22334689


Q ss_pred             eccCCCCceeeeec
Q 004217          346 TYSTPSGQYELVLS  359 (767)
Q Consensus       346 ~~~~~~~q~~~~~~  359 (767)
                      +||..+++....+.
T Consensus       354 ~wd~~~~~~~~~~~  367 (437)
T 3gre_A          354 MFSLNELSSSKAVI  367 (437)
T ss_dssp             EEETTCGGGCEEEE
T ss_pred             EEECCCcccceEEe
Confidence            99999998887774

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=2.9e-21  Score=203.22  Aligned_cols=191  Identities=13%  Similarity=0.130  Sum_probs=157.4

Q ss_pred             eEEEEEEcC--CCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCC--CCeEEEEeCCCeEEEEECCCCe-
Q 004217           72 QIFEAGRDA--RRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGS-  140 (767)
Q Consensus        72 ~~~vA~sd~--g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSpD--G~~LASgs~DGtVrVWDl~tg~-  140 (767)
                      ...+++...  +..|++++.|+.|++||+.++      .+..|...|.+++|+|+  +++|++++.|+.|++||+.++. 
T Consensus        58 v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  137 (379)
T 3jrp_A           58 VWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT  137 (379)
T ss_dssp             EEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred             EEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence            556666544  899999999999999999876      35689999999999999  9999999999999999998873 


Q ss_pred             -EEEEEccCCCCcEEEEEccC------------CCcEEEEEeCCCeEEEEECCCCeE----EEee-cCCCCeEEEEEcCC
Q 004217          141 -CLKVLHGHRRTPWVVRFHPL------------NPTIIASGSLDHEVRLWNASTAEC----IGSR-DFYRPIASIAFHAS  202 (767)
Q Consensus       141 -~l~~L~gH~~~V~sLafsP~------------dg~lLaSgS~DGtVrIWDl~tg~~----i~~l-~h~~~VtsVafSPd  202 (767)
                       ....+.+|...|.+++|+|.            ++++|++++.|+.|++||+++++.    ...+ .|...|.+++|+|+
T Consensus       138 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  217 (379)
T 3jrp_A          138 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT  217 (379)
T ss_dssp             CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred             eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCC
Confidence             45567889999999999995            589999999999999999987653    2333 48899999999999


Q ss_pred             ---CCEEEEEECCc-EEEEEcCCCccccCCe--EEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCC
Q 004217          203 ---GELLAVASGHK-LYIWRYNMREETSSPR--IVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS  262 (767)
Q Consensus       203 ---G~~LAsgSdd~-V~VWDl~t~~~~~~~~--~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~  262 (767)
                         +++|++++.++ |++||++++.......  ....|...|++++|+|++++|++++.     +|++...
T Consensus       218 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          218 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             CSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             CCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence               89999999666 9999999875321111  12347889999999999998888765     6777643

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.88  E-value=1.9e-21  Score=214.13  Aligned_cols=206  Identities=16%  Similarity=0.151  Sum_probs=157.6

Q ss_pred             CCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeE--EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC
Q 004217          104 SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSC--LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS  180 (767)
Q Consensus       104 ~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~--l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~  180 (767)
                      .+|...|++|+|+| ++++||+|+.||+|+|||+.+++.  ...+.+|.+.|++|+|+|.++++|++++.|++|++||++
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~  195 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK  195 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence            46888999999999 678999999999999999987653  445678999999999999778999999999999999998


Q ss_pred             CCeEEEeec---CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-
Q 004217          181 TAECIGSRD---FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-  255 (767)
Q Consensus       181 tg~~i~~l~---h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-  255 (767)
                      ++.......   +...+.+++|+|++++|++|+.++ |++||++....    ..+.+|...|++++|+|++..++++++ 
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~----~~~~~h~~~v~~v~~~p~~~~~~~s~s~  271 (435)
T 4e54_B          196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL----WNLRMHKKKVTHVALNPCCDWFLATASV  271 (435)
T ss_dssp             SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC----CCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred             CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee----EEEecccceEEeeeecCCCceEEEEecC
Confidence            776544433   344678999999999999999766 99999975432    246789999999999999987777665 


Q ss_pred             -----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCc
Q 004217          256 -----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGAT  330 (767)
Q Consensus       256 -----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~  330 (767)
                           +||++.......+.                            .......++..++|+||+.+|+..         
T Consensus       272 d~~v~iwd~~~~~~~~~~~----------------------------~~~~h~~~v~~~~~spdg~~l~s~---------  314 (435)
T 4e54_B          272 DQTVKIWDLRQVRGKASFL----------------------------YSLPHRHPVNAACFSPDGARLLTT---------  314 (435)
T ss_dssp             TSBCCEEETTTCCSSSCCS----------------------------BCCBCSSCEEECCBCTTSSEEEEE---------
T ss_pred             cceeeEEecccccccceEE----------------------------EeeeccccccceeECCCCCeeEEE---------
Confidence                 55555333211111                            111123456678899999999872         


Q ss_pred             ccccccccCCceeeeeccCCCCceeeee
Q 004217          331 RTQQSLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       331 ~~~~~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                              +....+.+||..+++....+
T Consensus       315 --------~~D~~i~iwd~~~~~~~~~~  334 (435)
T 4e54_B          315 --------DQKSEIRVYSASQWDCPLGL  334 (435)
T ss_dssp             --------ESSSCEEEEESSSSSSEEEE
T ss_pred             --------cCCCEEEEEECCCCccceEE
Confidence                    22345788998877665554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.88  E-value=7.1e-21  Score=209.51  Aligned_cols=188  Identities=17%  Similarity=0.249  Sum_probs=156.4

Q ss_pred             eEEEEEEcC-CCEEEEEeCCCeEEEEeCCC----------C----CCCCCCCCeEEEEECCCCC-eEEEEeCCCeEEEEE
Q 004217           72 QIFEAGRDA-RRGLASWVEAESLHHLRPKY----------C----PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIID  135 (767)
Q Consensus        72 ~~~vA~sd~-g~~LaSgs~DgsIrlWd~~t----------~----~L~gH~~sVtsVaFSpDG~-~LASgs~DGtVrVWD  135 (767)
                      ...+++... +..|++++.++.|++|++..          .    .+.+|...|.+++|+|+++ +|++|+.||.|+|||
T Consensus       131 v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  210 (430)
T 2xyi_A          131 VNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWD  210 (430)
T ss_dssp             CSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEE
T ss_pred             EEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEe
Confidence            445666665 78899999999999999975          2    2568999999999999988 999999999999999


Q ss_pred             CCCCeE-------EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC---eEEEee-cCCCCeEEEEEcCCCC
Q 004217          136 CQTGSC-------LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA---ECIGSR-DFYRPIASIAFHASGE  204 (767)
Q Consensus       136 l~tg~~-------l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg---~~i~~l-~h~~~VtsVafSPdG~  204 (767)
                      +.++..       ...+.+|...|.+++|+|.++.+|++++.|+.|++||++++   +.+..+ .|...|++++|+|++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~  290 (430)
T 2xyi_A          211 INATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE  290 (430)
T ss_dssp             TTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCT
T ss_pred             CCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCC
Confidence            987422       45678999999999999977889999999999999999987   444444 6889999999999997


Q ss_pred             -EEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCC
Q 004217          205 -LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDS  261 (767)
Q Consensus       205 -~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s  261 (767)
                       +|++|+.++ |++||+++...  ....+..|...|.+++|+|+++.++++++      +|++..
T Consensus       291 ~~l~tg~~dg~v~vwd~~~~~~--~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          291 FILATGSADKTVALWDLRNLKL--KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             TEEEEEETTSEEEEEETTCTTS--CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             CEEEEEeCCCeEEEEeCCCCCC--CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence             688888665 99999998543  23467789999999999999987666654      666654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.88  E-value=1.8e-21  Score=210.74  Aligned_cols=185  Identities=15%  Similarity=0.168  Sum_probs=150.5

Q ss_pred             eEEEEEEcCCCEEEE--EeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE--E
Q 004217           72 QIFEAGRDARRGLAS--WVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK--V  144 (767)
Q Consensus        72 ~~~vA~sd~g~~LaS--gs~DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~--~  144 (767)
                      ..+++++.+|+.++.  ++.|++|++||+.+.+   ...|...|.+++|+|||++|++++.| .+++|+..+++.+.  .
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~  214 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKT  214 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeee
Confidence            567888999998765  4478999999998873   22588899999999999999999865 56677777776553  3


Q ss_pred             EccCCCCcEEEEEccCCCcEEEEEeCCC----eEEEEECCCCeEEE-----eecCCCCeEEEEEcCCCCEEEEEECCc-E
Q 004217          145 LHGHRRTPWVVRFHPLNPTIIASGSLDH----EVRLWNASTAECIG-----SRDFYRPIASIAFHASGELLAVASGHK-L  214 (767)
Q Consensus       145 L~gH~~~V~sLafsP~dg~lLaSgS~DG----tVrIWDl~tg~~i~-----~l~h~~~VtsVafSPdG~~LAsgSdd~-V  214 (767)
                      ..+|...|.+++|+| ++.++++++.|+    .+++||+.......     ...|...|++++|+|+|++||+|+.|+ |
T Consensus       215 ~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V  293 (365)
T 4h5i_A          215 DFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSI  293 (365)
T ss_dssp             CCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCE
T ss_pred             cCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEE
Confidence            457888999999999 999999999887    68999988765432     235888999999999999999999776 9


Q ss_pred             EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcC
Q 004217          215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLD  260 (767)
Q Consensus       215 ~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~  260 (767)
                      +|||+++++.+.  ..+.+|...|++|+|+|||++|++++.     +|++.
T Consensus       294 ~iwd~~~~~~~~--~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          294 ALVKLKDLSMSK--IFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             EEEETTTTEEEE--EETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             EEEECCCCcEEE--EecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            999999988654  234679999999999999997776654     66654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.88  E-value=5e-21  Score=207.91  Aligned_cols=184  Identities=20%  Similarity=0.286  Sum_probs=159.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEE
Q 004217           80 ARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~s  154 (767)
                      ++..+++++.|+.|++||+...     .+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+
T Consensus       185 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  264 (401)
T 4aez_A          185 NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA  264 (401)
T ss_dssp             ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred             CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEE
Confidence            5678999999999999999843     46789999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCcEEEEEe--CCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE--C-CcEEEEEcCCCccccCCe
Q 004217          155 VRFHPLNPTIIASGS--LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--G-HKLYIWRYNMREETSSPR  229 (767)
Q Consensus       155 LafsP~dg~lLaSgS--~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS--d-d~V~VWDl~t~~~~~~~~  229 (767)
                      ++|+|++..++++++  .|+.|++||+.+++++..+.+...|.+++|+|++++|++++  . +.|++||+.+++... ..
T Consensus       265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~-~~  343 (401)
T 4aez_A          265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK-QV  343 (401)
T ss_dssp             EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE-EE
T ss_pred             EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee-EE
Confidence            999996667888876  79999999999999999999999999999999999999864  3 449999999865433 23


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCc
Q 004217          230 IVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSES  264 (767)
Q Consensus       230 ~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~  264 (767)
                      .+.+|...|.+++|+|++++|++++.     +|++..++.
T Consensus       344 ~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~  383 (401)
T 4aez_A          344 DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH  383 (401)
T ss_dssp             EEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred             EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence            46689999999999999998777654     677665443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.88  E-value=1.4e-21  Score=206.49  Aligned_cols=184  Identities=18%  Similarity=0.181  Sum_probs=150.0

Q ss_pred             eEEEEEEc--CCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCC--CCeEEEEeCCCeEEEEECCCCeE
Q 004217           72 QIFEAGRD--ARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGSC  141 (767)
Q Consensus        72 ~~~vA~sd--~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSpD--G~~LASgs~DGtVrVWDl~tg~~  141 (767)
                      ...+++..  ++..|++++.|++|++||..++      .+.+|...|.+++|+|+  +.+|++|+.|++|++||+.++..
T Consensus        60 V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~  139 (316)
T 3bg1_A           60 VWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ  139 (316)
T ss_dssp             EEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC
T ss_pred             EEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC
Confidence            55566643  4889999999999999999875      25689999999999997  88999999999999999987632


Q ss_pred             ---EEEEccCCCCcEEEEEccCC----------------CcEEEEEeCCCeEEEEECCCC---eEEEee-cCCCCeEEEE
Q 004217          142 ---LKVLHGHRRTPWVVRFHPLN----------------PTIIASGSLDHEVRLWNASTA---ECIGSR-DFYRPIASIA  198 (767)
Q Consensus       142 ---l~~L~gH~~~V~sLafsP~d----------------g~lLaSgS~DGtVrIWDl~tg---~~i~~l-~h~~~VtsVa  198 (767)
                         ...+.+|...|.+++|+|..                +++|++|+.|++|++||++..   +++..+ .|...|.+++
T Consensus       140 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~  219 (316)
T 3bg1_A          140 WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA  219 (316)
T ss_dssp             EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEE
T ss_pred             cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEE
Confidence               34567899999999999931                368999999999999999865   344444 4889999999


Q ss_pred             EcCCC----CEEEEEECCc-EEEEEcCCCcc-ccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          199 FHASG----ELLAVASGHK-LYIWRYNMREE-TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       199 fSPdG----~~LAsgSdd~-V~VWDl~t~~~-~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      |+|++    ++|++++.|+ |++||+++... ......+..|...|++++|+|++++|++++.
T Consensus       220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~  282 (316)
T 3bg1_A          220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG  282 (316)
T ss_dssp             CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred             ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence            99987    7899999766 99999986321 1112345678999999999999998887775

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.88  E-value=9.9e-21  Score=199.43  Aligned_cols=187  Identities=16%  Similarity=0.161  Sum_probs=160.1

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE---
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC---  141 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~---  141 (767)
                      ....+++..++..|++++.|+.|++||..+++      +..|...|.+++|+|++++|++++.|+.|++||+++++.   
T Consensus        54 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~  133 (372)
T 1k8k_C           54 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV  133 (372)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE
T ss_pred             cccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCccee
Confidence            46678888899999999999999999997762      468999999999999999999999999999999988762   


Q ss_pred             E-EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC------------------CCeEEEee-cCCCCeEEEEEcC
Q 004217          142 L-KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS------------------TAECIGSR-DFYRPIASIAFHA  201 (767)
Q Consensus       142 l-~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~------------------tg~~i~~l-~h~~~VtsVafSP  201 (767)
                      . ....+|...|.+++|+| ++++|++++.|+.|++||++                  .++++..+ .|...|.+++|+|
T Consensus       134 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  212 (372)
T 1k8k_C          134 CKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA  212 (372)
T ss_dssp             EEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred             eeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC
Confidence            3 33367899999999999 89999999999999999954                  56777776 5888999999999


Q ss_pred             CCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe----eCCcCC
Q 004217          202 SGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE----VNDLDS  261 (767)
Q Consensus       202 dG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs----vwdl~s  261 (767)
                      ++++|++++.++ |++||+++++.+.   .+..|...|.+++|+|++++++++..    +|++..
T Consensus       213 ~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~  274 (372)
T 1k8k_C          213 NGSRVAWVSHDSTVCLADADKKMAVA---TLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS  274 (372)
T ss_dssp             SSSEEEEEETTTEEEEEEGGGTTEEE---EEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             CCCEEEEEeCCCEEEEEECCCCceeE---EEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence            999999999766 9999999887654   67788899999999999986555422    566654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.88  E-value=5.4e-21  Score=204.11  Aligned_cols=173  Identities=19%  Similarity=0.175  Sum_probs=151.7

Q ss_pred             cceEEEEEE----cCCCE-EEEEeCCCeEEEEeCCC------CC---------C-------CCCCCCeEEEEECCCCCeE
Q 004217           70 FSQIFEAGR----DARRG-LASWVEAESLHHLRPKY------CP---------L-------SPPPRSTIAAAFSPDGKTL  122 (767)
Q Consensus        70 ~s~~~vA~s----d~g~~-LaSgs~DgsIrlWd~~t------~~---------L-------~gH~~sVtsVaFSpDG~~L  122 (767)
                      .....+++.    .++.. |++++.|+.|++||+..      .+         +       ..|...|.+++|+|++ +|
T Consensus       122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l  200 (397)
T 1sq9_A          122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LI  200 (397)
T ss_dssp             SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EE
T ss_pred             CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eE
Confidence            446777788    78888 99999999999999987      32         2       3488899999999999 99


Q ss_pred             EEEeCCCeEEEEECCCCeEEEEEcc---C---CCCcEEEEEccCCCcEEEEEeCC---CeEEEEECCCCeEEEeec----
Q 004217          123 ASTHGDHTVKIIDCQTGSCLKVLHG---H---RRTPWVVRFHPLNPTIIASGSLD---HEVRLWNASTAECIGSRD----  189 (767)
Q Consensus       123 ASgs~DGtVrVWDl~tg~~l~~L~g---H---~~~V~sLafsP~dg~lLaSgS~D---GtVrIWDl~tg~~i~~l~----  189 (767)
                      ++++.|+.|++||+++++.+..+..   |   ...|.+++|+| ++++|++++.|   +.|++||+++++.+..+.    
T Consensus       201 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~  279 (397)
T 1sq9_A          201 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH  279 (397)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--
T ss_pred             EEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC-CCCEEEEEecCCCCceEEEEECCCCcccceeccCcc
Confidence            9999999999999999999999998   9   99999999999 89999999999   999999999999888764    


Q ss_pred             ----------CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEe------cC---------------CCC
Q 004217          190 ----------FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVL------RT---------------RRS  237 (767)
Q Consensus       190 ----------h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~------~h---------------~~~  237 (767)
                                |...|.+++|+|++++|++++.++ |++||+++++.+.   .+.      .|               ...
T Consensus       280 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  356 (397)
T 1sq9_A          280 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT---TLNMHCDDIEIEEDILAVDEHGDSLAEPG  356 (397)
T ss_dssp             ------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             cccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeE---EEecccCcccchhhhhccccccccccCCc
Confidence                      789999999999999999999666 9999999887655   555      66               899


Q ss_pred             eEEEEEccCC
Q 004217          238 LRAVHFHPHA  247 (767)
Q Consensus       238 VtsVaFSPDG  247 (767)
                      |++++|+|++
T Consensus       357 v~~~~~~~~g  366 (397)
T 1sq9_A          357 VFDVKFLKKG  366 (397)
T ss_dssp             EEEEEEECTT
T ss_pred             eeEEEecccc
Confidence            9999999998

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.2e-20  Score=223.81  Aligned_cols=183  Identities=16%  Similarity=0.148  Sum_probs=156.6

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCC--CCeEEEEeCCCeEEEEECCCCe--E
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGS--C  141 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSpD--G~~LASgs~DGtVrVWDl~tg~--~  141 (767)
                      ...++++.++..|++++.|+.|++|+....      .+.+|.+.|++++|+++  +++|++|+.||+|++||+.+++  .
T Consensus        12 V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~   91 (753)
T 3jro_A           12 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ   91 (753)
T ss_dssp             EEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEE
T ss_pred             eEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccc
Confidence            556777788999999999999999998743      47799999999999997  9999999999999999999987  7


Q ss_pred             EEEEccCCCCcEEEEEccCC--CcEEEEEeCCCeEEEEECCCCeE---EEeecCCCCeEEEEEcC-------------CC
Q 004217          142 LKVLHGHRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTAEC---IGSRDFYRPIASIAFHA-------------SG  203 (767)
Q Consensus       142 l~~L~gH~~~V~sLafsP~d--g~lLaSgS~DGtVrIWDl~tg~~---i~~l~h~~~VtsVafSP-------------dG  203 (767)
                      +..+.+|...|.+++|+| +  ++++++|+.||+|++||++++..   .....|...|.+++|+|             ++
T Consensus        92 ~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~  170 (753)
T 3jro_A           92 IAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES  170 (753)
T ss_dssp             EEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGG
T ss_pred             cccccCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCC
Confidence            788899999999999999 7  89999999999999999998733   23346889999999999             58


Q ss_pred             CEEEEEECCc-EEEEEcCCCccc-cCCeEEecCCCCeEEEEEccC---CCeEEEEEe
Q 004217          204 ELLAVASGHK-LYIWRYNMREET-SSPRIVLRTRRSLRAVHFHPH---AAPLLLTAE  255 (767)
Q Consensus       204 ~~LAsgSdd~-V~VWDl~t~~~~-~~~~~l~~h~~~VtsVaFSPD---G~~LlaSgs  255 (767)
                      .+|++|+.++ |++||+++.... .....+.+|...|++++|+|+   ++++++++.
T Consensus       171 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~  227 (753)
T 3jro_A          171 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ  227 (753)
T ss_dssp             CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred             CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence            8999999666 999999877532 122356789999999999999   776666654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.87  E-value=5.9e-20  Score=201.61  Aligned_cols=250  Identities=14%  Similarity=0.211  Sum_probs=189.4

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEE
Q 004217           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~s  154 (767)
                      .++..|++++.|+.|++||..++    .+.+|...|.+++|+  +++|++|+.|++|++||+.+++.+..+.+|...|.+
T Consensus       127 ~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~  204 (445)
T 2ovr_B          127 FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC  204 (445)
T ss_dssp             EETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             EcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEE
Confidence            35899999999999999999876    478999999999998  679999999999999999999999999999999999


Q ss_pred             EEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEe
Q 004217          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVL  232 (767)
Q Consensus       155 LafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~  232 (767)
                      +.|++   +.+++|+.|++|++||+.+++++..+ .|...|.+++|  ++++|++++.++ |++||+++++...   .+.
T Consensus       205 ~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~  276 (445)
T 2ovr_B          205 MHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH---TLQ  276 (445)
T ss_dssp             EEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE---EEC
T ss_pred             EEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeE---Eec
Confidence            99964   78999999999999999999988775 58899999999  788899998666 9999999887654   677


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCcc------------CCCCeEEEecCCCCCCCce
Q 004217          233 RTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR------------YPPPVICMAGAHSSSHPGL  295 (767)
Q Consensus       233 ~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~------------~p~~~v~l~~~~Ssd~~~L  295 (767)
                      +|...|.++.|  ++.++++++.     +||++.++....+....+...            .....+.+|+...+.....
T Consensus       277 ~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  354 (445)
T 2ovr_B          277 GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQT  354 (445)
T ss_dssp             CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            89999999999  7787777664     888876655443332211100            0123455555444333333


Q ss_pred             eeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217          296 AEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS  359 (767)
Q Consensus       296 ~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~  359 (767)
                      ..+......++....|  ++..+++                 ++....+.+||..+++....+.
T Consensus       355 ~~~~~~~~~~v~~~~~--~~~~l~s-----------------~~~dg~v~iwd~~~~~~~~~~~  399 (445)
T 2ovr_B          355 LQGPNKHQSAVTCLQF--NKNFVIT-----------------SSDDGTVKLWDLKTGEFIRNLV  399 (445)
T ss_dssp             ECSTTSCSSCEEEEEE--CSSEEEE-----------------EETTSEEEEEETTTCCEEEEEE
T ss_pred             EccCCCCCCCEEEEEE--CCCEEEE-----------------EeCCCeEEEEECCCCceeeeee
Confidence            3222223334444555  3555554                 1234568899999988777663

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2.2e-21  Score=222.35  Aligned_cols=209  Identities=9%  Similarity=0.029  Sum_probs=151.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC--------CCCCCCCeEEEEECCC------CCeEEEEeCCCeEEEEECCCCeE-----
Q 004217           81 RRGLASWVEAESLHHLRPKYCP--------LSPPPRSTIAAAFSPD------GKTLASTHGDHTVKIIDCQTGSC-----  141 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t~~--------L~gH~~sVtsVaFSpD------G~~LASgs~DGtVrVWDl~tg~~-----  141 (767)
                      +..+++++.|++|++|++.+++        +..|.+.|.+++|+|+      +.+||+++.|++|+|||+.+++.     
T Consensus       173 ~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~  252 (524)
T 2j04_B          173 LEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF  252 (524)
T ss_dssp             ---------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred             hhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence            3457888899999999997764        3467889999999996      57999999999999999987632     


Q ss_pred             ------EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE-EEe-ecCCCCeEEE--EEcCCC-CEEEEEE
Q 004217          142 ------LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGS-RDFYRPIASI--AFHASG-ELLAVAS  210 (767)
Q Consensus       142 ------l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~-i~~-l~h~~~VtsV--afSPdG-~~LAsgS  210 (767)
                            ...+.+|...|++++|++ + ..|++|+.||+|++||+++++. ... ..|...|.++  +|+|+| ++||+++
T Consensus       253 ~~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S  330 (524)
T 2j04_B          253 KMCEKPSLTLSLADSLITTFDFLS-P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVA  330 (524)
T ss_dssp             ECCCSCSEEECCTTTCEEEEEESS-S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEE
T ss_pred             eeecCceEEEEcCCCCEEEEEecC-C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEec
Confidence                  247889999999999998 4 5899999999999999997643 333 4589999999  578888 8999999


Q ss_pred             CCc-EEEEEcCCCccccCCeEEecCCC--CeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecC
Q 004217          211 GHK-LYIWRYNMREETSSPRIVLRTRR--SLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGA  287 (767)
Q Consensus       211 dd~-V~VWDl~t~~~~~~~~~l~~h~~--~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~  287 (767)
                      .|+ |+|||+++.+...   .+.+|..  .|.+++|+|+++.+++++...                       .+.+|+.
T Consensus       331 ~D~tvklWD~~~~~~~~---~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~-----------------------tv~lwd~  384 (524)
T 2j04_B          331 VDGYFYIFNPKDIATTK---TTVSRFRGSNLVPVVYCPQIYSYIYSDGAS-----------------------SLRAVPS  384 (524)
T ss_dssp             TTSEEEEECGGGHHHHC---EEEEECSCCSCCCEEEETTTTEEEEECSSS-----------------------EEEEEET
T ss_pred             cCCeEEEEECCCCCccc---ccccccccCcccceEeCCCcCeEEEeCCCC-----------------------cEEEEEC
Confidence            766 9999999877644   4555543  588999999999776654311                       1222322


Q ss_pred             CCCCCCceeeccCCCCCCceeeEEecCCCEEEE
Q 004217          288 HSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (767)
Q Consensus       288 ~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva  320 (767)
                      ..+.......+   ...+++.++|+||+..|+.
T Consensus       385 ~~~~~~~~l~g---H~~~V~sva~Sp~g~~l~S  414 (524)
T 2j04_B          385 RAAFAVHPLVS---RETTITAIGVSRLHPMVLA  414 (524)
T ss_dssp             TCTTCCEEEEE---CSSCEEEEECCSSCCBCEE
T ss_pred             cccccceeeec---CCCceEEEEeCCCCCeEEE
Confidence            22222121222   2346677899999988876

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.87  E-value=4.3e-21  Score=200.59  Aligned_cols=180  Identities=10%  Similarity=0.104  Sum_probs=148.8

Q ss_pred             ceEEEEEEcCCC-EEEEEeC---CCeEEEEeCCCCCC-----CCCCCCeEEEEECCC---CCeEEEEeCCCeEEEEECCC
Q 004217           71 SQIFEAGRDARR-GLASWVE---AESLHHLRPKYCPL-----SPPPRSTIAAAFSPD---GKTLASTHGDHTVKIIDCQT  138 (767)
Q Consensus        71 s~~~vA~sd~g~-~LaSgs~---DgsIrlWd~~t~~L-----~gH~~sVtsVaFSpD---G~~LASgs~DGtVrVWDl~t  138 (767)
                      ....+++..++. .+++++.   |+.|++|+..++++     .+|...|.+++|+|+   +++|++|+.|+.|++||+.+
T Consensus        20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~   99 (357)
T 3i2n_A           20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEA   99 (357)
T ss_dssp             CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTS
T ss_pred             ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCC
Confidence            356677777775 4556665   99999999988642     379999999999998   79999999999999999999


Q ss_pred             Ce-EEEEEccCCCCcEEEEE------ccCCCcEEEEEeCCCeEEEEECCCCe-EEEeec-C----CCCeEEEE----EcC
Q 004217          139 GS-CLKVLHGHRRTPWVVRF------HPLNPTIIASGSLDHEVRLWNASTAE-CIGSRD-F----YRPIASIA----FHA  201 (767)
Q Consensus       139 g~-~l~~L~gH~~~V~sLaf------sP~dg~lLaSgS~DGtVrIWDl~tg~-~i~~l~-h----~~~VtsVa----fSP  201 (767)
                      ++ .+..+.+|...|.++.|      +| ++++|++++.|++|++||+++++ .+..+. +    ...+.+++    |+|
T Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  178 (357)
T 3i2n_A          100 PEMPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ  178 (357)
T ss_dssp             CSSCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-
T ss_pred             CCccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC
Confidence            88 88899999999999965      67 88999999999999999999886 555543 2    34788998    789


Q ss_pred             CCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEcc---CCCeEEEEEe
Q 004217          202 SGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHP---HAAPLLLTAE  255 (767)
Q Consensus       202 dG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSP---DG~~LlaSgs  255 (767)
                      ++++|++++.++ |++||+++.+..    ....|...|.+++|+|   ++.++++++.
T Consensus       179 ~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~l~~~~~  232 (357)
T 3i2n_A          179 EERVVCAGYDNGDIKLFDLRNMALR----WETNIKNGVCSLEFDRKDISMNKLVATSL  232 (357)
T ss_dssp             CCCEEEEEETTSEEEEEETTTTEEE----EEEECSSCEEEEEESCSSSSCCEEEEEES
T ss_pred             CCCEEEEEccCCeEEEEECccCcee----eecCCCCceEEEEcCCCCCCCCEEEEECC
Confidence            999999999765 999999988753    3567889999999999   8998777664

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.87  E-value=9.1e-20  Score=186.99  Aligned_cols=181  Identities=12%  Similarity=0.124  Sum_probs=153.6

Q ss_pred             cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE
Q 004217           70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL  142 (767)
Q Consensus        70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l  142 (767)
                      .....+++..++..|++++.|+.|++|++...       .+.+|...|.+++|  ++++|++++.|+.|++||  .++.+
T Consensus        60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~  135 (313)
T 3odt_A           60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLV  135 (313)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEE
T ss_pred             ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEE
Confidence            34677888899999999999999999998653       36689999999999  678999999999999999  67888


Q ss_pred             EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee--cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEc
Q 004217          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFHASGELLAVASGHK-LYIWRY  219 (767)
Q Consensus       143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l--~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl  219 (767)
                      ..+..|...+.++.|+|.+++++++++.|+.|++||.  .+....+  .+...+.+++|+|++. +++++.++ |++||+
T Consensus       136 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~  212 (313)
T 3odt_A          136 YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDM  212 (313)
T ss_dssp             EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEET
T ss_pred             EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEEC
Confidence            8999999999999999878899999999999999994  4444444  3889999999999998 77777555 999999


Q ss_pred             CCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004217          220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (767)
Q Consensus       220 ~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s  261 (767)
                      ++++.+.   .+..|...|++++|+|++. +++++.     +||+..
T Consensus       213 ~~~~~~~---~~~~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~  255 (313)
T 3odt_A          213 HTGDVLR---TYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKEN  255 (313)
T ss_dssp             TTCCEEE---EEECCSSCEEEEEECTTSC-EEEEETTSEEEEECTTT
T ss_pred             Cchhhhh---hhhcCCceEEEEEEecCCC-EEEEecCCEEEEEECCC
Confidence            9887655   6778999999999999995 666553     555554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.87  E-value=3.5e-20  Score=203.47  Aligned_cols=179  Identities=16%  Similarity=0.299  Sum_probs=153.6

Q ss_pred             EcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcE
Q 004217           78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (767)
Q Consensus        78 sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~  153 (767)
                      .-++..+++++.|+.|++||..++    .+.+|...|.+++|  ++++|++|+.||+|++||+.+++.+..+.+|...|.
T Consensus       140 ~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~  217 (435)
T 1p22_A          140 QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL  217 (435)
T ss_dssp             ECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE
T ss_pred             EECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEE
Confidence            348899999999999999999886    47799999999999  789999999999999999999999999999999999


Q ss_pred             EEEEccCCCcEEEEEeCCCeEEEEECCCCeEE---Ee-ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCC
Q 004217          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECI---GS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSP  228 (767)
Q Consensus       154 sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i---~~-l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~  228 (767)
                      +++|++   +.+++|+.|++|++||+.+++..   .. ..|...|.+++|  ++++|++++.++ |++||+++++.+.  
T Consensus       218 ~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~--  290 (435)
T 1p22_A          218 HLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVR--  290 (435)
T ss_dssp             EEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEE--
T ss_pred             EEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEE--
Confidence            999975   69999999999999999987754   22 458899999999  788999999766 9999999987655  


Q ss_pred             eEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004217          229 RIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL  268 (767)
Q Consensus       229 ~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l  268 (767)
                       .+..|...|.++.|+  ++++++++.     +||++.+.....+
T Consensus       291 -~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~  332 (435)
T 1p22_A          291 -TLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL  332 (435)
T ss_dssp             -EEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             -EEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence             677899999999994  566666554     8888866554433

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.87  E-value=1.9e-20  Score=200.40  Aligned_cols=191  Identities=13%  Similarity=0.088  Sum_probs=154.3

Q ss_pred             ceEEEEEEc-CCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE
Q 004217           71 SQIFEAGRD-ARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK  143 (767)
Q Consensus        71 s~~~vA~sd-~g~~LaSgs~DgsIrlWd~~t~~------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~  143 (767)
                      ....+++.. ++..|++++.|+.|++||+....      ..+|...|.+++|+|++++|++++.|+.|++||+ +++.+.
T Consensus       120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~  198 (383)
T 3ei3_B          120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIF  198 (383)
T ss_dssp             BEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEE
T ss_pred             ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEE
Confidence            366677777 67999999999999999998652      2355688999999999999999999999999999 577889


Q ss_pred             EEccCCCCcEEEEEccCCCc-EEEEEeCCCeEEEEECCC----CeEEEeecCCCCeEEEEEcC-CCCEEEEEECCc-EEE
Q 004217          144 VLHGHRRTPWVVRFHPLNPT-IIASGSLDHEVRLWNAST----AECIGSRDFYRPIASIAFHA-SGELLAVASGHK-LYI  216 (767)
Q Consensus       144 ~L~gH~~~V~sLafsP~dg~-lLaSgS~DGtVrIWDl~t----g~~i~~l~h~~~VtsVafSP-dG~~LAsgSdd~-V~V  216 (767)
                      .+.+|...|.+++|+| +++ +|++++.|++|++||+++    +.++..+.|...|.+++|+| ++++|++++.++ |++
T Consensus       199 ~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~i  277 (383)
T 3ei3_B          199 KEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRV  277 (383)
T ss_dssp             EEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred             EeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence            9999999999999999 666 999999999999999998    77788888999999999999 999999999665 999


Q ss_pred             EEcCCCccccCCeEEecC-------CC----------CeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004217          217 WRYNMREETSSPRIVLRT-------RR----------SLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL  268 (767)
Q Consensus       217 WDl~t~~~~~~~~~l~~h-------~~----------~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l  268 (767)
                      ||+++.+...   .+..|       ..          .+..++|+||+++  +++.     +||+..++....+
T Consensus       278 wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l  346 (383)
T 3ei3_B          278 YSSYDWSKPD---QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQL  346 (383)
T ss_dssp             EETTBTTSCS---EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEE
T ss_pred             EECCCCcccc---ccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeee
Confidence            9999877543   33333       22          3344555666554  2112     7888766554333

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.87  E-value=1.6e-20  Score=193.05  Aligned_cols=201  Identities=15%  Similarity=0.139  Sum_probs=161.0

Q ss_pred             ceEEEEEEc--CCCEEEEEeCCCeEEEEeCCCC-------------CCCCCCCCeEEEEECCC--CCeEEEEeCCCeEEE
Q 004217           71 SQIFEAGRD--ARRGLASWVEAESLHHLRPKYC-------------PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKI  133 (767)
Q Consensus        71 s~~~vA~sd--~g~~LaSgs~DgsIrlWd~~t~-------------~L~gH~~sVtsVaFSpD--G~~LASgs~DGtVrV  133 (767)
                      ....+++..  ++..|++++.|+.|++||+..+             .+.+|...|.+++|+|+  +++|++++.|+.|++
T Consensus        59 ~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~i  138 (351)
T 3f3f_A           59 SIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRL  138 (351)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEE
T ss_pred             cEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEE
Confidence            356667766  5899999999999999999764             35689999999999999  999999999999999


Q ss_pred             EECCCCeEEEEEc-------------cCCCCcEEEEEccC--CCcEEEEEeCCCeEEEEECCCCeE--EEee-cCCCCeE
Q 004217          134 IDCQTGSCLKVLH-------------GHRRTPWVVRFHPL--NPTIIASGSLDHEVRLWNASTAEC--IGSR-DFYRPIA  195 (767)
Q Consensus       134 WDl~tg~~l~~L~-------------gH~~~V~sLafsP~--dg~lLaSgS~DGtVrIWDl~tg~~--i~~l-~h~~~Vt  195 (767)
                      ||+.+++.+..+.             +|...+.+++|+|.  +++++++++.|+.+.+|+...++.  +..+ .|...|.
T Consensus       139 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  218 (351)
T 3f3f_A          139 YDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIR  218 (351)
T ss_dssp             EECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEE
T ss_pred             ecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCccee
Confidence            9998876443222             68889999999993  389999999999999998888765  3333 4889999


Q ss_pred             EEEEcCCC----CEEEEEECCc-EEEEEcCCCcc-------------------------------------------ccC
Q 004217          196 SIAFHASG----ELLAVASGHK-LYIWRYNMREE-------------------------------------------TSS  227 (767)
Q Consensus       196 sVafSPdG----~~LAsgSdd~-V~VWDl~t~~~-------------------------------------------~~~  227 (767)
                      +++|+|++    ++|++++.|+ |++||++....                                           ...
T Consensus       219 ~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (351)
T 3f3f_A          219 SISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL  298 (351)
T ss_dssp             EEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEE
T ss_pred             EEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccE
Confidence            99999998    8999999766 99999987521                                           011


Q ss_pred             CeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeec
Q 004217          228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATS  271 (767)
Q Consensus       228 ~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~  271 (767)
                      ...+.+|...|++++|+|++++|++++.     +|++........+...
T Consensus       299 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~  347 (351)
T 3f3f_A          299 LSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVI  347 (351)
T ss_dssp             EEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred             EEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhheeeh
Confidence            2345678999999999999998887764     7777765554444433

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.86  E-value=1.2e-20  Score=204.19  Aligned_cols=207  Identities=13%  Similarity=0.092  Sum_probs=153.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-------------CCCCCCCCeEEEEECCCCCeEEEEe--CCCeEEEEECCCCeEEEE
Q 004217           80 ARRGLASWVEAESLHHLRPKYC-------------PLSPPPRSTIAAAFSPDGKTLASTH--GDHTVKIIDCQTGSCLKV  144 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~-------------~L~gH~~sVtsVaFSpDG~~LASgs--~DGtVrVWDl~tg~~l~~  144 (767)
                      ++..|++++.|+.+|+|+....             ....+...+.+++|||||++|++++  .|++|+|||+++++++..
T Consensus        93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~  172 (365)
T 4h5i_A           93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE  172 (365)
T ss_dssp             CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred             CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence            3444555567888999987643             1234556799999999999987554  689999999999999988


Q ss_pred             EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe---ecCCCCeEEEEEcCCCCEEEEEECC-----cEEE
Q 004217          145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS---RDFYRPIASIAFHASGELLAVASGH-----KLYI  216 (767)
Q Consensus       145 L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~---l~h~~~VtsVafSPdG~~LAsgSdd-----~V~V  216 (767)
                      +. |...|.+++|+| +++++++++.| .+++|+..+++.+..   ..|...|.+++|+|+|+++++++.+     .+++
T Consensus       173 ~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~  249 (365)
T 4h5i_A          173 IE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK  249 (365)
T ss_dssp             EE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred             eC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence            86 778899999999 99999999855 567777777766543   3477789999999999999998843     2788


Q ss_pred             EEcCCCcccc-CCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEee-cCCCccCCCCeEEEecCCC
Q 004217          217 WRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLAT-SPGYWRYPPPVICMAGAHS  289 (767)
Q Consensus       217 WDl~t~~~~~-~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t-~sG~~~~p~~~v~l~~~~S  289 (767)
                      ||+....... ....+.+|...|++++|+|||++|++++.     +||+..++.   +.+ ..+                
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~---~~~~~~g----------------  310 (365)
T 4h5i_A          250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM---SKIFKQA----------------  310 (365)
T ss_dssp             EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE---EEEETTS----------------
T ss_pred             cccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE---EEEecCc----------------
Confidence            8887665321 12356778999999999999997776654     555543221   111 122                


Q ss_pred             CCCCceeeccCCCCCCceeeEEecCCCEEEE
Q 004217          290 SSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (767)
Q Consensus       290 sd~~~L~sg~~~~slpil~psFSpDg~rIva  320 (767)
                                  ...++..++|+|||++|+.
T Consensus       311 ------------H~~~V~~v~fSpdg~~laS  329 (365)
T 4h5i_A          311 ------------HSFAITEVTISPDSTYVAS  329 (365)
T ss_dssp             ------------SSSCEEEEEECTTSCEEEE
T ss_pred             ------------ccCCEEEEEECCCCCEEEE
Confidence                        3346667899999999986

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.86  E-value=8.6e-21  Score=201.59  Aligned_cols=230  Identities=15%  Similarity=0.181  Sum_probs=171.6

Q ss_pred             CeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEE-------------ccCCCCc
Q 004217           91 ESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVL-------------HGHRRTP  152 (767)
Q Consensus        91 gsIrlWd~~t~----~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L-------------~gH~~~V  152 (767)
                      ..+++|+.+..    .+.+|.+.|++++|+| ++++|++|+.||.|+|||+.+++....+             .+|...|
T Consensus        23 ~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  102 (408)
T 4a11_B           23 STRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV  102 (408)
T ss_dssp             HHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCE
T ss_pred             CcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcE
Confidence            34555655443    3678999999999999 9999999999999999999987654333             2599999


Q ss_pred             EEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCC---CEEEEEECCc-EEEEEcCCCccccCC
Q 004217          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASG---ELLAVASGHK-LYIWRYNMREETSSP  228 (767)
Q Consensus       153 ~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG---~~LAsgSdd~-V~VWDl~t~~~~~~~  228 (767)
                      .+++|+|.++++|++++.|+.|++||+.+++.+..+.+...+.++.|++.+   .++++++.++ |++||+++++...  
T Consensus       103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~--  180 (408)
T 4a11_B          103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH--  180 (408)
T ss_dssp             EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE--
T ss_pred             EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee--
Confidence            999999977789999999999999999999999999999999999999954   4899998665 9999999887544  


Q ss_pred             eEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCC
Q 004217          229 RIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLI  302 (767)
Q Consensus       229 ~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~  302 (767)
                       .+..|...|.+++|+|+++++++++.      +||++........  ...+..             .............
T Consensus       181 -~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~-------------~~~~~~~~~~~~~  244 (408)
T 4a11_B          181 -ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLIT--LDQHNG-------------KKSQAVESANTAH  244 (408)
T ss_dssp             -EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEE--CCTTTT-------------CSCCCTTTSSCSC
T ss_pred             -eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccc--cccccc-------------ccceeeccccccc
Confidence             67789999999999999997555554      6777654321111  111100             0000111111223


Q ss_pred             CCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCcee
Q 004217          303 TPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYE  355 (767)
Q Consensus       303 slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~  355 (767)
                      ..++...+|+||+..+++..                 ....+.+||..+++..
T Consensus       245 ~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~vwd~~~~~~~  280 (408)
T 4a11_B          245 NGKVNGLCFTSDGLHLLTVG-----------------TDNRMRLWNSSNGENT  280 (408)
T ss_dssp             SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTCCBC
T ss_pred             cCceeEEEEcCCCCEEEEec-----------------CCCeEEEEECCCCccc
Confidence            44666899999999998732                 2235788998876543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.86  E-value=6.4e-20  Score=215.08  Aligned_cols=183  Identities=17%  Similarity=0.228  Sum_probs=162.2

Q ss_pred             cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC-eEEEE
Q 004217           70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG-SCLKV  144 (767)
Q Consensus        70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg-~~l~~  144 (767)
                      .....++++.++..|++++.|+.|++||..++    .+.+|...|.+++|+|++++|++++.|++|++||+.++ .....
T Consensus        56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  135 (814)
T 3mkq_A           56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT  135 (814)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred             CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence            34777888999999999999999999999876    36689999999999999999999999999999999987 77788


Q ss_pred             EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec--CCCCeEEEEEcC--CCCEEEEEECCc-EEEEEc
Q 004217          145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--FYRPIASIAFHA--SGELLAVASGHK-LYIWRY  219 (767)
Q Consensus       145 L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~--h~~~VtsVafSP--dG~~LAsgSdd~-V~VWDl  219 (767)
                      +.+|...|.+++|+|.+++.|++++.|++|++||+.+++....+.  +...+.+++|+|  ++.+|++++.++ |++||+
T Consensus       136 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~  215 (814)
T 3mkq_A          136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY  215 (814)
T ss_dssp             EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEET
T ss_pred             EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            899999999999999677899999999999999999877666543  448899999999  999999999766 999999


Q ss_pred             CCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       220 ~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ++++...   .+..|...|.+++|+|+++++++++.
T Consensus       216 ~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~  248 (814)
T 3mkq_A          216 QTKSCVA---TLEGHMSNVSFAVFHPTLPIIISGSE  248 (814)
T ss_dssp             TTTEEEE---EEECCSSCEEEEEECSSSSEEEEEET
T ss_pred             CCCcEEE---EEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence            9887644   67789999999999999997777654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1e-20  Score=201.21  Aligned_cols=180  Identities=12%  Similarity=0.052  Sum_probs=145.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCC--CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECC---------CCeEEEEEc-c
Q 004217           80 ARRGLASWVEAESLHHLRPKYCPLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ---------TGSCLKVLH-G  147 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~~L~--gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~---------tg~~l~~L~-g  147 (767)
                      ++..+++++.|+.|++||+.+++..  -....|.++.|+|+   +++++.|++|++|+..         +++.+..+. +
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  123 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD  123 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence            5678999999999999999876421  11456778888887   9999999999999665         555455554 7


Q ss_pred             CCCCcEEEEEccC-CCcEEEEEeCCCeEEEEECCCCeEEEee--cCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCc
Q 004217          148 HRRTPWVVRFHPL-NPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMRE  223 (767)
Q Consensus       148 H~~~V~sLafsP~-dg~lLaSgS~DGtVrIWDl~tg~~i~~l--~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~  223 (767)
                      |.+.|.+++|+|. +++++++++.|++|++||+++++++...  .+...+.+++|+|+|.+|++|+.++ |++||+++++
T Consensus       124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~  203 (343)
T 3lrv_A          124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD  203 (343)
T ss_dssp             CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred             CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence            7789999999982 5689999999999999999999987665  3556799999999999999998666 9999999987


Q ss_pred             cccCCeEEec-CCCCeEEEEEccCCCeEEEEEe----eCCcCCCCc
Q 004217          224 ETSSPRIVLR-TRRSLRAVHFHPHAAPLLLTAE----VNDLDSSES  264 (767)
Q Consensus       224 ~~~~~~~l~~-h~~~VtsVaFSPDG~~LlaSgs----vwdl~s~~~  264 (767)
                      ...  ..+.. |...|++++|+|++.+|++++.    +||++....
T Consensus       204 ~~~--~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~  247 (343)
T 3lrv_A          204 QAS--SRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVG  247 (343)
T ss_dssp             SCC--EECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTT
T ss_pred             CCc--cEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCc
Confidence            641  24555 9999999999999998877765    677765444

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.1e-19  Score=200.53  Aligned_cols=161  Identities=11%  Similarity=0.116  Sum_probs=136.3

Q ss_pred             CCCCCeEEEEECCCCCeE-EEEeCCCeEEEEECC--CCeEEEEEc--cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEEC
Q 004217          105 PPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQ--TGSCLKVLH--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (767)
Q Consensus       105 gH~~sVtsVaFSpDG~~L-ASgs~DGtVrVWDl~--tg~~l~~L~--gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl  179 (767)
                      +|.+.|.+++|+|++++| ++++.|+.|+|||+.  +++.+..+.  .|...|.+++|+| ++++|++++.|+.|++||+
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~  178 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDI  178 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEec
Confidence            455579999999999996 899999999999999  888888886  5778999999999 8999999999999999999


Q ss_pred             CCCeEEE----e-ecCCCCeEEEEEcCC---CCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeE
Q 004217          180 STAECIG----S-RDFYRPIASIAFHAS---GELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (767)
Q Consensus       180 ~tg~~i~----~-l~h~~~VtsVafSPd---G~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~L  250 (767)
                      .+++...    . ..|...|.+++|+|+   +++|++++.|+ |++||+++++.+.  ....+|...|++++|+ ++++|
T Consensus       179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~h~~~v~~~~~s-d~~~l  255 (450)
T 2vdu_B          179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD--KWLFGHKHFVSSICCG-KDYLL  255 (450)
T ss_dssp             TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE--EECCCCSSCEEEEEEC-STTEE
T ss_pred             CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee--eeecCCCCceEEEEEC-CCCEE
Confidence            9877653    3 458899999999999   99999999765 9999999887544  2255899999999999 99987


Q ss_pred             EEEEe-----eCCcCCCCcceeEe
Q 004217          251 LLTAE-----VNDLDSSESSLTLA  269 (767)
Q Consensus       251 laSgs-----vwdl~s~~~~~~l~  269 (767)
                      ++++.     +||+..++....+.
T Consensus       256 ~s~~~d~~v~vwd~~~~~~~~~~~  279 (450)
T 2vdu_B          256 LSAGGDDKIFAWDWKTGKNLSTFD  279 (450)
T ss_dssp             EEEESSSEEEEEETTTCCEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEeeeec
Confidence            77664     88988776554443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.85  E-value=3.4e-19  Score=182.73  Aligned_cols=227  Identities=12%  Similarity=0.134  Sum_probs=174.1

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC---eEEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG---SCLKV  144 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg---~~l~~  144 (767)
                      ...+++ .++..|++++.|+.|++||..+.    .+..|...|.+++|+|++++|++++.|+.|++||+...   +.+..
T Consensus        21 v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~   99 (313)
T 3odt_A           21 VRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYT   99 (313)
T ss_dssp             EEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CE
T ss_pred             cEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccc
Confidence            444555 67888999999999999999876    35689999999999999999999999999999998754   56788


Q ss_pred             EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcC-CCCEEEEEECCc-EEEEEcCC
Q 004217          145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHA-SGELLAVASGHK-LYIWRYNM  221 (767)
Q Consensus       145 L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSP-dG~~LAsgSdd~-V~VWDl~t  221 (767)
                      +.+|...|.++.|+   ++++++++.|+.|++||  .++.+..+ .|...+.+++|+| ++++|++++.++ |++||.. 
T Consensus       100 ~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-  173 (313)
T 3odt_A          100 LIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND-  173 (313)
T ss_dssp             ECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-
T ss_pred             hhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-
Confidence            89999999999994   57999999999999999  55555554 5889999999998 899999999766 9999933 


Q ss_pred             CccccCCeEEec-CCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCce
Q 004217          222 REETSSPRIVLR-TRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGL  295 (767)
Q Consensus       222 ~~~~~~~~~l~~-h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L  295 (767)
                       +...   .+.. |...|.+++|+|++. +++++.     +||++..+....+   .+                      
T Consensus       174 -~~~~---~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~---~~----------------------  223 (313)
T 3odt_A          174 -KVIK---TFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTY---EG----------------------  223 (313)
T ss_dssp             -EEEE---EECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEE---EC----------------------
T ss_pred             -ceEE---EEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhh---hc----------------------
Confidence             2222   3444 889999999999998 665543     5555533221111   11                      


Q ss_pred             eeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217          296 AEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS  359 (767)
Q Consensus       296 ~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~  359 (767)
                            ...++...+|+||+ ++++.                 +....+.+||..+++....+.
T Consensus       224 ------~~~~i~~~~~~~~~-~l~~~-----------------~~dg~v~iwd~~~~~~~~~~~  263 (313)
T 3odt_A          224 ------HESFVYCIKLLPNG-DIVSC-----------------GEDRTVRIWSKENGSLKQVIT  263 (313)
T ss_dssp             ------CSSCEEEEEECTTS-CEEEE-----------------ETTSEEEEECTTTCCEEEEEE
T ss_pred             ------CCceEEEEEEecCC-CEEEE-----------------ecCCEEEEEECCCCceeEEEe
Confidence                  22345578899998 45541                 233468899998888777764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.85  E-value=2.2e-20  Score=198.60  Aligned_cols=170  Identities=11%  Similarity=0.008  Sum_probs=137.7

Q ss_pred             EEEEeCCCeEEEEeCC---------CCC-----CCCCCCCeEEEEECC--CCCeEEEEeCCCeEEEEECCCCeEEEEEc-
Q 004217           84 LASWVEAESLHHLRPK---------YCP-----LSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKVLH-  146 (767)
Q Consensus        84 LaSgs~DgsIrlWd~~---------t~~-----L~gH~~sVtsVaFSp--DG~~LASgs~DGtVrVWDl~tg~~l~~L~-  146 (767)
                      +++++.|++|++|+..         +.+     ..+|.+.|.+++|+|  ++++|++++.|++|++||+++++.+..+. 
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~  167 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA  167 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Confidence            7888899999998665         332     226668999999999  99999999999999999999999877664 


Q ss_pred             cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEE-Eee-c-CCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCc
Q 004217          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI-GSR-D-FYRPIASIAFHASGELLAVASGHKLYIWRYNMRE  223 (767)
Q Consensus       147 gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i-~~l-~-h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~  223 (767)
                      .|...|.+++|+| ++.+|++|+.|++|++||+++++.+ ..+ . |...|.+++|+|+|.+|++++++.|++||+++.+
T Consensus       168 ~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~  246 (343)
T 3lrv_A          168 KSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDV  246 (343)
T ss_dssp             CSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSST
T ss_pred             CCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCC
Confidence            4556899999999 9999999999999999999998876 444 3 7899999999999999999998889999999887


Q ss_pred             cccCCeEEecCCCCe--EEEEEccCCCeEEEEE
Q 004217          224 ETSSPRIVLRTRRSL--RAVHFHPHAAPLLLTA  254 (767)
Q Consensus       224 ~~~~~~~l~~h~~~V--tsVaFSPDG~~LlaSg  254 (767)
                      .......+..|...+  .+++|+|+|++|++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s  279 (343)
T 3lrv_A          247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYS  279 (343)
T ss_dssp             TCBSSCCCBC-----CCEEEEECTTSSEEEEEE
T ss_pred             cceeecccccccccccceEEEECCCCCEEEEec
Confidence            654222222243344  4699999999888754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.85  E-value=3.2e-20  Score=202.17  Aligned_cols=200  Identities=13%  Similarity=0.106  Sum_probs=161.9

Q ss_pred             CcceEEEEEEcCCCEEEEEeCCCeEEEEeCC---CCC--------------CCC--CCCCeEEEE--ECCCCCeEEEEeC
Q 004217           69 SFSQIFEAGRDARRGLASWVEAESLHHLRPK---YCP--------------LSP--PPRSTIAAA--FSPDGKTLASTHG  127 (767)
Q Consensus        69 s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~---t~~--------------L~g--H~~sVtsVa--FSpDG~~LASgs~  127 (767)
                      ......+++..++..|++++.|+.|++||+.   .++              +..  +...+.++.  +++++++|++++.
T Consensus       111 ~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (437)
T 3gre_A          111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN  190 (437)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET
T ss_pred             CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC
Confidence            3447778888899999999999999999984   221              112  667788887  6689999999999


Q ss_pred             CCeEEEEECCCCeEEEEEcc--CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee--cCCCCeEEEEEcC--
Q 004217          128 DHTVKIIDCQTGSCLKVLHG--HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFHA--  201 (767)
Q Consensus       128 DGtVrVWDl~tg~~l~~L~g--H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l--~h~~~VtsVafSP--  201 (767)
                      |+.|++||+++++++..+.+  |...|.+++|+| ++++|++|+.|++|++||+++++++..+  .+...|.+++|+|  
T Consensus       191 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  269 (437)
T 3gre_A          191 LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY  269 (437)
T ss_dssp             TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTT
T ss_pred             CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecccc
Confidence            99999999999999999988  899999999999 8999999999999999999999998876  5777899996654  


Q ss_pred             --CCCEEEEEECCc-EEEEEcCCCccccCCe---------------------EEec--CCCCeEEEEEccCCCeEEEEEe
Q 004217          202 --SGELLAVASGHK-LYIWRYNMREETSSPR---------------------IVLR--TRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       202 --dG~~LAsgSdd~-V~VWDl~t~~~~~~~~---------------------~l~~--h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                        ++++|++++.++ |++||+++++......                     .+.+  |...|++++|+ ++++|++++.
T Consensus       270 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~  348 (437)
T 3gre_A          270 GKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA  348 (437)
T ss_dssp             CTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG
T ss_pred             CCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC
Confidence              677999999777 9999999877533100                     0112  66779999999 7776666553


Q ss_pred             -----eCCcCCCCcceeEee
Q 004217          256 -----VNDLDSSESSLTLAT  270 (767)
Q Consensus       256 -----vwdl~s~~~~~~l~t  270 (767)
                           +||+...+....+..
T Consensus       349 d~~i~~wd~~~~~~~~~~~~  368 (437)
T 3gre_A          349 TSSIVMFSLNELSSSKAVIS  368 (437)
T ss_dssp             GTEEEEEETTCGGGCEEEEC
T ss_pred             CCeEEEEECCCcccceEEec
Confidence                 888887776655553

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.7e-20  Score=215.69  Aligned_cols=232  Identities=10%  Similarity=0.015  Sum_probs=172.5

Q ss_pred             cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC--CCCCCCC-----CeEEEEECCCCCeEEEEeCCCeEEEEECCCCe--
Q 004217           70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYC--PLSPPPR-----STIAAAFSPDGKTLASTHGDHTVKIIDCQTGS--  140 (767)
Q Consensus        70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~--~L~gH~~-----sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~--  140 (767)
                      .....++++.+|..|++++.|+.|++|+.+..  .+. |..     .|.+++|||||++||+|+.||+|+|||+.+++  
T Consensus        86 ~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~  164 (588)
T 2j04_A           86 CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSEN  164 (588)
T ss_dssp             CCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTT
T ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccc
Confidence            34888999999999999999999999996543  344 554     59999999999999999999999999999875  


Q ss_pred             -----EEEEE----ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEE---Eee--cCCCCeEEEEEcCCCCEE
Q 004217          141 -----CLKVL----HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI---GSR--DFYRPIASIAFHASGELL  206 (767)
Q Consensus       141 -----~l~~L----~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i---~~l--~h~~~VtsVafSPdG~~L  206 (767)
                           .+.++    .+|...|.+++|+| ++  +++++.|++|++||+.+++..   ..+  .|...|.+++|+  |+.|
T Consensus       165 ~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~L  239 (588)
T 2j04_A          165 TPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKV  239 (588)
T ss_dssp             CCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEE
T ss_pred             cccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEE
Confidence                 36776    67888999999999 66  888899999999999987742   344  477899999999  6899


Q ss_pred             EEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEE--ccCCCeEEEEEe----eCCcCCCCcceeEeecCCC-ccCCC
Q 004217          207 AVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHF--HPHAAPLLLTAE----VNDLDSSESSLTLATSPGY-WRYPP  279 (767)
Q Consensus       207 AsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaF--SPDG~~LlaSgs----vwdl~s~~~~~~l~t~sG~-~~~p~  279 (767)
                      |+++++.|++||+.+++...   ...+|...|+.+.|  +||+..++++.+    +|..+.    .. ....+. .....
T Consensus       240 ASa~~~tIkLWd~~~~~~~~---~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~d~----~~-~spd~~l~a~~d  311 (588)
T 2j04_A          240 VLTCPGYVHKIDLKNYSISS---LKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLEDE----LH-VTADNIIAPYLE  311 (588)
T ss_dssp             EEECSSEEEEEETTTTEEEE---EECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEESSS----EE-EECCCSSHHHHH
T ss_pred             EEEeCCeEEEEECCCCeEEE---EEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEeecc----EE-ECCCceEEEEcC
Confidence            99988779999999877533   34489999999999  999987666542    666551    11 111110 00012


Q ss_pred             CeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEE
Q 004217          280 PVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (767)
Q Consensus       280 ~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva  320 (767)
                      ..+.+|+..... .....    ....+..++|||||..+++
T Consensus       312 ~~v~lW~~~g~~-l~~~~----~~~~I~~va~SPdG~~lA~  347 (588)
T 2j04_A          312 KKFKKWSTIWNE-FNNYE----TTLVIHGISLSPDGYSIAI  347 (588)
T ss_dssp             HHHHHTTTTTTS-SSSSC----CEEEEEEEEECTTSSEEEE
T ss_pred             CEEEEEECCCCc-eeeec----cceEEEEEEECCCCCEEEE
Confidence            234445432221 11111    1223446999999999987

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.84  E-value=2.3e-19  Score=184.85  Aligned_cols=204  Identities=18%  Similarity=0.257  Sum_probs=166.3

Q ss_pred             cceeecccccceec-------CCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC------------------------
Q 004217           54 SSKRLLGETARKCS-------GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCP------------------------  102 (767)
Q Consensus        54 ~sk~~wd~~~~~~~-------~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~------------------------  102 (767)
                      ...++|+.....+.       .......+++..++..|++++.|++|++|+..+++                        
T Consensus        45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s  124 (318)
T 4ggc_A           45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSS  124 (318)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEE
Confidence            34677875432221       12236788889999999999999999999987531                        


Q ss_pred             ---------------------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe----EEEEEccCCCCcEEEEE
Q 004217          103 ---------------------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS----CLKVLHGHRRTPWVVRF  157 (767)
Q Consensus       103 ---------------------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~----~l~~L~gH~~~V~sLaf  157 (767)
                                           +.+|...+..+.|++++++|++++.|++|+|||+.+++    .......|.+.|..+.|
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~  204 (318)
T 4ggc_A          125 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW  204 (318)
T ss_dssp             EETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEE
T ss_pred             EecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEe
Confidence                                 23688889999999999999999999999999998765    33556778899999999


Q ss_pred             ccCCCcEE--EEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE--C-CcEEEEEcCCCccccCCeEEe
Q 004217          158 HPLNPTII--ASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--G-HKLYIWRYNMREETSSPRIVL  232 (767)
Q Consensus       158 sP~dg~lL--aSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS--d-d~V~VWDl~t~~~~~~~~~l~  232 (767)
                      +|.+.+++  ++++.+++|++||...........+...+..+.|+|++..+++++  . +.|++||+++++.+.   .+.
T Consensus       205 ~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~---~l~  281 (318)
T 4ggc_A          205 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA---ELK  281 (318)
T ss_dssp             CTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE---EEC
T ss_pred             cCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEE---EEc
Confidence            99666655  456788999999999999988888999999999999999888775  3 349999999988765   778


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEe-----eCCcC
Q 004217          233 RTRRSLRAVHFHPHAAPLLLTAE-----VNDLD  260 (767)
Q Consensus       233 ~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~  260 (767)
                      +|.+.|++++|+|||++|++++.     +||+.
T Consensus       282 gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          282 GHTSRVLSLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            99999999999999998877664     56654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.84  E-value=1.2e-19  Score=189.23  Aligned_cols=180  Identities=10%  Similarity=0.042  Sum_probs=150.2

Q ss_pred             ceEEEEEEcCCC-EEEEEeCCCeEEEEeC-CCC---CCCC--CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC-----
Q 004217           71 SQIFEAGRDARR-GLASWVEAESLHHLRP-KYC---PLSP--PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-----  138 (767)
Q Consensus        71 s~~~vA~sd~g~-~LaSgs~DgsIrlWd~-~t~---~L~g--H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t-----  138 (767)
                      ....+++..++. .|++++.|+.|++|++ ..+   .+.+  |...|.+++|+| +++|++++.|+.|++||+++     
T Consensus        58 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~  136 (342)
T 1yfq_A           58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGV  136 (342)
T ss_dssp             CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBC
T ss_pred             ceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccc
Confidence            466777888899 9999999999999999 776   4667  999999999999 99999999999999999987     


Q ss_pred             ----CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC-CeEE---EeecCCCCeEEEEEcC-CCCEEEEE
Q 004217          139 ----GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECI---GSRDFYRPIASIAFHA-SGELLAVA  209 (767)
Q Consensus       139 ----g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t-g~~i---~~l~h~~~VtsVafSP-dG~~LAsg  209 (767)
                          ++++..+. |...|.+++|+| +.  +++++.|+.|++||+++ +...   ....+...+.+++|+| ++++|+++
T Consensus       137 ~~~~~~~~~~~~-~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~  212 (342)
T 1yfq_A          137 IAVKNLNSNNTK-VKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS  212 (342)
T ss_dssp             EEEEESCSSSSS-SCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE
T ss_pred             ccccCCeeeEEe-eCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEE
Confidence                66666666 889999999998 44  99999999999999998 5432   3345788999999999 99999999


Q ss_pred             ECCc-EEEEEcCCC--cc-ccCCeEEecCCC---------CeEEEEEccCCCeEEEEEe
Q 004217          210 SGHK-LYIWRYNMR--EE-TSSPRIVLRTRR---------SLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       210 Sdd~-V~VWDl~t~--~~-~~~~~~l~~h~~---------~VtsVaFSPDG~~LlaSgs  255 (767)
                      +.++ |++||++..  .. ......+..|..         .|.+++|+|++++|++++.
T Consensus       213 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  271 (342)
T 1yfq_A          213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS  271 (342)
T ss_dssp             ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET
T ss_pred             ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC
Confidence            9766 999999876  10 012345666654         9999999999998877664

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.84  E-value=3.7e-19  Score=190.18  Aligned_cols=250  Identities=13%  Similarity=0.171  Sum_probs=179.4

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeE-EEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEE
Q 004217           82 RGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (767)
Q Consensus        82 ~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~L-ASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLa  156 (767)
                      ..+++++.|+.|++||..+++    +..| ..+.+++|+|++++| ++++.|++|++||+.+++.+..+..+. .+.+++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~   80 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA   80 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence            457788999999999998874    3344 459999999999987 677789999999999999998887665 899999


Q ss_pred             EccCCCcEE-EEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEE-EEEECC-cEEEEEcCCCccccCCeEEec
Q 004217          157 FHPLNPTII-ASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELL-AVASGH-KLYIWRYNMREETSSPRIVLR  233 (767)
Q Consensus       157 fsP~dg~lL-aSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~L-AsgSdd-~V~VWDl~t~~~~~~~~~l~~  233 (767)
                      |+| +++++ ++++.|+.|++||+.+++.+..+.+...+.+++|+|+|++| ++++.+ .|++||+.+++...   .+. 
T Consensus        81 ~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~---~~~-  155 (391)
T 1l0q_A           81 VSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN---TVS-  155 (391)
T ss_dssp             ECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE-
T ss_pred             ECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE---EEe-
Confidence            999 66655 56667899999999999999888888889999999999977 455544 49999999887544   333 


Q ss_pred             CCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeEeecC----------CCccC------CCCeEEEecCCCCC
Q 004217          234 TRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLATSP----------GYWRY------PPPVICMAGAHSSS  291 (767)
Q Consensus       234 h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~~~~l~t~s----------G~~~~------p~~~v~l~~~~Ssd  291 (767)
                      +...+.+++|+|+++++++++.      +||++.......+....          |..-+      ....+.+|+...+.
T Consensus       156 ~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~  235 (391)
T 1l0q_A          156 VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (391)
T ss_dssp             CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence            3466799999999998866643      77777654433222110          00000      12344445543332


Q ss_pred             CCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217          292 HPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       292 ~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                      .......    ......+.|+||++++++..                +....+.+||..+++....+
T Consensus       236 ~~~~~~~----~~~~~~~~~s~dg~~l~~s~----------------~~d~~v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          236 ITARIPV----GPDPAGIAVTPDGKKVYVAL----------------SFXNTVSVIDTATNTITATM  282 (391)
T ss_dssp             EEEEEEC----CSSEEEEEECTTSSEEEEEE----------------TTTTEEEEEETTTTEEEEEE
T ss_pred             EEEEEec----CCCccEEEEccCCCEEEEEc----------------CCCCEEEEEECCCCcEEEEE
Confidence            2222111    11234688999999987621                22346889999988777666

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.84  E-value=1.1e-19  Score=200.08  Aligned_cols=184  Identities=15%  Similarity=0.171  Sum_probs=150.9

Q ss_pred             eEEEEEEcCCC-EEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECC-CCCeEEEEeCCCeEEEEECCC
Q 004217           72 QIFEAGRDARR-GLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT  138 (767)
Q Consensus        72 ~~~vA~sd~g~-~LaSgs~DgsIrlWd~~t~-----------~L~gH~~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~t  138 (767)
                      ...+++...+. .|++++.|+.|++|++...           .+.+|...|.+++|+| ++.+|++++.|+.|++||+++
T Consensus       184 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~  263 (430)
T 2xyi_A          184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN  263 (430)
T ss_dssp             CCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             eEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence            45566666666 9999999999999999872           2558999999999999 788999999999999999998


Q ss_pred             C---eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC-CeEEEee-cCCCCeEEEEEcCCCC-EEEEEECC
Q 004217          139 G---SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGSR-DFYRPIASIAFHASGE-LLAVASGH  212 (767)
Q Consensus       139 g---~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t-g~~i~~l-~h~~~VtsVafSPdG~-~LAsgSdd  212 (767)
                      +   +.+..+..|...|.+++|+|.+..+|++|+.|++|++||+++ .+.+..+ .|...|.+++|+|+++ +|++++.+
T Consensus       264 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d  343 (430)
T 2xyi_A          264 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD  343 (430)
T ss_dssp             SCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETT
T ss_pred             CCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCC
Confidence            7   567788899999999999994445899999999999999998 4555555 4889999999999995 68888855


Q ss_pred             c-EEEEEcCCCccc-----------cCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          213 K-LYIWRYNMREET-----------SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       213 ~-V~VWDl~t~~~~-----------~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      + |+|||+......           .......+|...|++++|+|++++++++++
T Consensus       344 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s  398 (430)
T 2xyi_A          344 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS  398 (430)
T ss_dssp             SCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred             CcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence            5 999999873211           112345578889999999999996555554

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.84  E-value=1.4e-19  Score=189.01  Aligned_cols=182  Identities=13%  Similarity=0.114  Sum_probs=148.1

Q ss_pred             cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEE--CCCCCeEEEEeCCCeEEEEECCCCeEEEE
Q 004217           70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAF--SPDGKTLASTHGDHTVKIIDCQTGSCLKV  144 (767)
Q Consensus        70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~---L~gH~~sVtsVaF--SpDG~~LASgs~DGtVrVWDl~tg~~l~~  144 (767)
                      .....+++..++..|++++.|+.|++||+.+++   +.+|...|.+++|  ++++++|++++.|+.|++||+++++.+..
T Consensus        87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  166 (368)
T 3mmy_A           87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV  166 (368)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred             CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence            346777888899999999999999999998873   5689999999999  99999999999999999999998877666


Q ss_pred             EccCC-----------------------------------------CCcEEEEEccCCCc----EEEEEeCCCeEEEEEC
Q 004217          145 LHGHR-----------------------------------------RTPWVVRFHPLNPT----IIASGSLDHEVRLWNA  179 (767)
Q Consensus       145 L~gH~-----------------------------------------~~V~sLafsP~dg~----lLaSgS~DGtVrIWDl  179 (767)
                      +..|.                                         ..+.++.+.+ +..    .+++++.|+.|++||+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~  245 (368)
T 3mmy_A          167 LQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYI  245 (368)
T ss_dssp             EECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEES
T ss_pred             EecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEec
Confidence            65443                                         2233444443 222    3999999999999999


Q ss_pred             CCC---eEEEeec-CCC------------CeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEE
Q 004217          180 STA---ECIGSRD-FYR------------PIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVH  242 (767)
Q Consensus       180 ~tg---~~i~~l~-h~~------------~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVa  242 (767)
                      +..   +.+..+. |..            .|.+++|+|++++|++++.++ |++||+++++.+.   .+..|...|++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~  322 (368)
T 3mmy_A          246 NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK---TSEQLDQPISACC  322 (368)
T ss_dssp             SCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE---ECCCCSSCEEEEE
T ss_pred             CCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE---EecCCCCCceEEE
Confidence            886   3333332 332            799999999999999999666 9999999887655   6678999999999


Q ss_pred             EccCCCeEEEEEe
Q 004217          243 FHPHAAPLLLTAE  255 (767)
Q Consensus       243 FSPDG~~LlaSgs  255 (767)
                      |+|+|++|++++.
T Consensus       323 ~s~~g~~l~~~s~  335 (368)
T 3mmy_A          323 FNHNGNIFAYASS  335 (368)
T ss_dssp             ECTTSSCEEEEEC
T ss_pred             ECCCCCeEEEEec
Confidence            9999998887776

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.84  E-value=3.9e-19  Score=194.47  Aligned_cols=188  Identities=19%  Similarity=0.290  Sum_probs=157.0

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---------------------------------------------CCCCC
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC---------------------------------------------PLSPP  106 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---------------------------------------------~L~gH  106 (767)
                      +.+++++.++..|++|+.|+.|++||+.++                                             .+.+|
T Consensus       150 V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h  229 (420)
T 4gga_A          150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH  229 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEeccc
Confidence            556777777888888888888888877542                                             13468


Q ss_pred             CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe----EEEEEccCCCCcEEEEEccCCCcEEEEE--eCCCeEEEEECC
Q 004217          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS----CLKVLHGHRRTPWVVRFHPLNPTIIASG--SLDHEVRLWNAS  180 (767)
Q Consensus       107 ~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~----~l~~L~gH~~~V~sLafsP~dg~lLaSg--S~DGtVrIWDl~  180 (767)
                      ...+..+.|++++++|++++.|+.|+|||..+++    .+..+..|...|.+++|+|.+..+++++  +.|++|++||+.
T Consensus       230 ~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~  309 (420)
T 4gga_A          230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC  309 (420)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred             ccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC
Confidence            8888899999999999999999999999998764    3566788999999999999777787764  579999999999


Q ss_pred             CCeEEEeecCCCCeEEEEEcCCCCEEEEEE--C-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe--
Q 004217          181 TAECIGSRDFYRPIASIAFHASGELLAVAS--G-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE--  255 (767)
Q Consensus       181 tg~~i~~l~h~~~VtsVafSPdG~~LAsgS--d-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs--  255 (767)
                      ++++...+.....+.++.|+|+++.+++++  . +.|+|||+.+++.+.   .+.+|...|++++|+|||++|++++.  
T Consensus       310 t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~---~l~gH~~~V~~l~~spdg~~l~S~s~D~  386 (420)
T 4gga_A          310 SGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA---ELKGHTSRVLSLTMSPDGATVASAAADE  386 (420)
T ss_dssp             TTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSSCEEEEETTT
T ss_pred             ccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCCEEEEEecCC
Confidence            999999998889999999999999888876  3 449999999988755   77899999999999999998887765  


Q ss_pred             ---eCCcCCC
Q 004217          256 ---VNDLDSS  262 (767)
Q Consensus       256 ---vwdl~s~  262 (767)
                         +||+...
T Consensus       387 tvriWdv~~~  396 (420)
T 4gga_A          387 TLRLWRCFEL  396 (420)
T ss_dssp             EEEEECCSCS
T ss_pred             eEEEEECCCC
Confidence               6776643

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.1e-19  Score=200.59  Aligned_cols=179  Identities=13%  Similarity=0.049  Sum_probs=154.1

Q ss_pred             ceEEEEEEcCCCEE-EEEeCCCeEEEEeCC--CCC----CC--CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE
Q 004217           71 SQIFEAGRDARRGL-ASWVEAESLHHLRPK--YCP----LS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC  141 (767)
Q Consensus        71 s~~~vA~sd~g~~L-aSgs~DgsIrlWd~~--t~~----L~--gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~  141 (767)
                      ....++++.++..| ++++.|+.|++|++.  .++    +.  .|...|.+++|+|++++|++|+.|+.|++||+.+++.
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~  183 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPE  183 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCC
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccc
Confidence            36678888899986 899999999999998  552    22  6778999999999999999999999999999988765


Q ss_pred             EE----EEccCCCCcEEEEEccCC---CcEEEEEeCCCeEEEEECCCCeEEEe-e-cCCCCeEEEEEcCCCCEEEEEECC
Q 004217          142 LK----VLHGHRRTPWVVRFHPLN---PTIIASGSLDHEVRLWNASTAECIGS-R-DFYRPIASIAFHASGELLAVASGH  212 (767)
Q Consensus       142 l~----~L~gH~~~V~sLafsP~d---g~lLaSgS~DGtVrIWDl~tg~~i~~-l-~h~~~VtsVafSPdG~~LAsgSdd  212 (767)
                      ..    .+.+|...|.+++|+| +   +++|++++.|++|++||+++++++.. + .|...|.+++|+ ++++|++++.+
T Consensus       184 ~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d  261 (450)
T 2vdu_B          184 EKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD  261 (450)
T ss_dssp             SSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESS
T ss_pred             ccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCC
Confidence            43    7788999999999999 7   88999999999999999999988776 3 588999999999 99999999976


Q ss_pred             c-EEEEEcCCCccccCCeEEe-------------------------cCCCCeEEEEEccCCCeEEEEE
Q 004217          213 K-LYIWRYNMREETSSPRIVL-------------------------RTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       213 ~-V~VWDl~t~~~~~~~~~l~-------------------------~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      + |++||+++++.+.   .+.                         .....|.+++|+|+++++++++
T Consensus       262 ~~v~vwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~  326 (450)
T 2vdu_B          262 DKIFAWDWKTGKNLS---TFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV  326 (450)
T ss_dssp             SEEEEEETTTCCEEE---EEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred             CeEEEEECCCCcEee---eecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence            5 9999999887544   222                         2345799999999999888877

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.83  E-value=1.7e-18  Score=189.90  Aligned_cols=237  Identities=15%  Similarity=0.168  Sum_probs=181.7

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ...+.+.  +..+++++.|+.|++||..++    .+.+|...|.+++|+  ++.|++|+.|++|++||+.+++.+..+.+
T Consensus       162 v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~  237 (445)
T 2ovr_B          162 VWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMG  237 (445)
T ss_dssp             EEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEEC
T ss_pred             EEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcC
Confidence            3444443  679999999999999999886    477999999999995  67899999999999999999999999999


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccc
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET  225 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~  225 (767)
                      |...|.+++|   +++++++++.|+.|++||+++++++..+. |...|.+++|  +++++++++.++ |++||+++++..
T Consensus       238 ~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~  312 (445)
T 2ovr_B          238 HVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCI  312 (445)
T ss_dssp             CSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             CcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEE
Confidence            9999999999   56889999999999999999999988875 8889999999  788999999665 999999998865


Q ss_pred             cCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccC---------------CCCeEEEe
Q 004217          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRY---------------PPPVICMA  285 (767)
Q Consensus       226 ~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~---------------p~~~v~l~  285 (767)
                      .   .+..|...+.++.++  ++++++++.     +||++.++....+....++...               ....+.+|
T Consensus       313 ~---~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iw  387 (445)
T 2ovr_B          313 H---TLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW  387 (445)
T ss_dssp             E---EECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEE
T ss_pred             E---EEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEE
Confidence            5   677898999988875  556666554     8888766654444432222110               12445566


Q ss_pred             cCCCCCCCceee--ccCCCCCCceeeEEecCCCEEEEee
Q 004217          286 GAHSSSHPGLAE--EVPLITPPFLRPSFVRDDERISLQH  322 (767)
Q Consensus       286 ~~~Ssd~~~L~s--g~~~~slpil~psFSpDg~rIva~~  322 (767)
                      +...+.......  .......+++..+|+|++..+++..
T Consensus       388 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~  426 (445)
T 2ovr_B          388 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS  426 (445)
T ss_dssp             ETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred             ECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcc
Confidence            655443322221  1112344566788999888877633

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.83  E-value=4.5e-19  Score=194.62  Aligned_cols=172  Identities=19%  Similarity=0.206  Sum_probs=154.1

Q ss_pred             EEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCc
Q 004217           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (767)
Q Consensus        77 ~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V  152 (767)
                      ...++..+++++.|+.|++||+.+.    .+.+|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|
T Consensus       276 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v  355 (464)
T 3v7d_B          276 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV  355 (464)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcE
Confidence            3567889999999999999999876    467899999999999999999999999999999999999999999999999


Q ss_pred             EEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEe
Q 004217          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVL  232 (767)
Q Consensus       153 ~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~  232 (767)
                      .++.|++   +++++++.|++|++||+.+++......+...+..++|++++++|++++++.|++||+++++.+.  ....
T Consensus       356 ~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~--~~~~  430 (464)
T 3v7d_B          356 GLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH--ANIL  430 (464)
T ss_dssp             EEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEE--SCTT
T ss_pred             EEEEEcC---CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEe--hhhc
Confidence            9999964   8999999999999999999988888888888999999999999999998789999999988754  2245


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEe
Q 004217          233 RTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       233 ~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .|...|.+++|+  ++.++++++
T Consensus       431 ~~~~~v~~v~~~--~~~l~~~~~  451 (464)
T 3v7d_B          431 KDADQIWSVNFK--GKTLVAAVE  451 (464)
T ss_dssp             TTCSEEEEEEEE--TTEEEEEEE
T ss_pred             cCCCcEEEEEec--CCEEEEEEE
Confidence            688999999997  566776665

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.83  E-value=2e-19  Score=218.27  Aligned_cols=187  Identities=12%  Similarity=0.087  Sum_probs=158.0

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ...+++++.++..|++++.|++|++|+....+   ...|...|.+++|+| |++|++++.|++|+|||+++++++..+. 
T Consensus        19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-   96 (902)
T 2oaj_A           19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-   96 (902)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-
T ss_pred             CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-
Confidence            47788999999999999999999999987763   235888999999999 8899999999999999999999998886 


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEE-----------e-ecCCCCeEEEEEcCCC-CEEEEEECCc-
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG-----------S-RDFYRPIASIAFHASG-ELLAVASGHK-  213 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~-----------~-l~h~~~VtsVafSPdG-~~LAsgSdd~-  213 (767)
                      |...|++++|+| +++++++|+.||+|++||++++++..           . ..|...|.+++|+|++ .+|++|++++ 
T Consensus        97 ~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~  175 (902)
T 2oaj_A           97 VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVT  175 (902)
T ss_dssp             CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCE
T ss_pred             CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCc
Confidence            778999999999 99999999999999999999987641           1 2377899999999964 6888888766 


Q ss_pred             EEEEEcCCCccccCCeEEec------------------CCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCc
Q 004217          214 LYIWRYNMREETSSPRIVLR------------------TRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSES  264 (767)
Q Consensus       214 V~VWDl~t~~~~~~~~~l~~------------------h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~  264 (767)
                      | +||+++++...   .+..                  |...|++++|+|||++|++++.     +||++.++.
T Consensus       176 v-lWd~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          176 L-TYSLVENEIKQ---SFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM  245 (902)
T ss_dssp             E-EEETTTTEEEE---EECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred             E-EEECCCCceEE---EEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence            8 99999887544   3332                  3578999999999998777665     777776543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.83  E-value=7.4e-19  Score=190.50  Aligned_cols=247  Identities=11%  Similarity=0.064  Sum_probs=185.9

Q ss_pred             EEEEEcCCCEEEEEeCCCeEEEEeCCCCC---------CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEE
Q 004217           74 FEAGRDARRGLASWVEAESLHHLRPKYCP---------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV  144 (767)
Q Consensus        74 ~vA~sd~g~~LaSgs~DgsIrlWd~~t~~---------L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~  144 (767)
                      .+++..++..++++..++.|++||..+++         +.+|...|.+++|+++++++++++.|+.|++||+++++.+..
T Consensus       127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~  206 (433)
T 3bws_A          127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKAT  206 (433)
T ss_dssp             CCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEE
T ss_pred             EEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEE
Confidence            45566666777788888999999998763         337888999999999999999999999999999999999999


Q ss_pred             EccCCCCcEEEEEccCCCcEE-EEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE---------CCcE
Q 004217          145 LHGHRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS---------GHKL  214 (767)
Q Consensus       145 L~gH~~~V~sLafsP~dg~lL-aSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS---------dd~V  214 (767)
                      +..|...+.+++|+| +++.+ ++++.|+.|++||+++++.+..+.....+.+++|+|+|++|++++         ++.|
T Consensus       207 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i  285 (433)
T 3bws_A          207 VDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRL  285 (433)
T ss_dssp             EECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEE
T ss_pred             EcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeE
Confidence            999999999999999 66655 566689999999999999998888777899999999999988887         2349


Q ss_pred             EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeEeecCCCccCCCCeEEEecCC
Q 004217          215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLATSPGYWRYPPPVICMAGAH  288 (767)
Q Consensus       215 ~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~  288 (767)
                      ++||+++++...    ...|...+.+++|+|+++++++++.      +|++..++....                     
T Consensus       286 ~~~d~~~~~~~~----~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~---------------------  340 (433)
T 3bws_A          286 GIYSMDKEKLID----TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS---------------------  340 (433)
T ss_dssp             EEEETTTTEEEE----EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE---------------------
T ss_pred             EEEECCCCcEEe----eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE---------------------
Confidence            999999886544    3455668999999999998877653      444432111100                     


Q ss_pred             CCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217          289 SSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS  359 (767)
Q Consensus       289 Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~  359 (767)
                             ..    .......++|+||++.+++.......-  ....-..++....+..||..+++....+.
T Consensus       341 -------~~----~~~~~~~~~~s~dg~~l~~~~~~~~~~--~~~~~~~g~~dg~v~~~d~~~~~~~~~~~  398 (433)
T 3bws_A          341 -------IP----VFDKPNTIALSPDGKYLYVSCRGPNHP--TEGYLKKGLVLGKVYVIDTTTDTVKEFWE  398 (433)
T ss_dssp             -------EE----CSSSEEEEEECTTSSEEEEEECCCCCT--TTCTTSCCSSCCEEEEEETTTTEEEEEEE
T ss_pred             -------ec----CCCCCCeEEEcCCCCEEEEEecCCCcc--ccccccccccceEEEEEECCCCcEEEEec
Confidence                   00    112344689999999998854432210  00111122334578999998888777664

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.82  E-value=3.3e-19  Score=211.47  Aligned_cols=191  Identities=13%  Similarity=0.124  Sum_probs=158.7

Q ss_pred             ceEEEEEEcC--CCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCC--CCeEEEEeCCCeEEEEECCCCe
Q 004217           71 SQIFEAGRDA--RRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGS  140 (767)
Q Consensus        71 s~~~vA~sd~--g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSpD--G~~LASgs~DGtVrVWDl~tg~  140 (767)
                      ....+++..+  +..|++++.|+.|++||..++      .+.+|...|.+++|+|+  +++|++|+.||.|++||+.++.
T Consensus        55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~  134 (753)
T 3jro_A           55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG  134 (753)
T ss_dssp             CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred             ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence            3566777655  899999999999999999876      35689999999999999  9999999999999999998873


Q ss_pred             --EEEEEccCCCCcEEEEEccC------------CCcEEEEEeCCCeEEEEECCCC----eEEEee-cCCCCeEEEEEcC
Q 004217          141 --CLKVLHGHRRTPWVVRFHPL------------NPTIIASGSLDHEVRLWNASTA----ECIGSR-DFYRPIASIAFHA  201 (767)
Q Consensus       141 --~l~~L~gH~~~V~sLafsP~------------dg~lLaSgS~DGtVrIWDl~tg----~~i~~l-~h~~~VtsVafSP  201 (767)
                        ....+.+|...|.+++|+|.            +++++++|+.||+|++||++++    .....+ .|...|.+++|+|
T Consensus       135 ~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp  214 (753)
T 3jro_A          135 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP  214 (753)
T ss_dssp             CCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred             CcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc
Confidence              34567889999999999994            4789999999999999999887    334443 4889999999999


Q ss_pred             C---CCEEEEEECCc-EEEEEcCCCcccc--CCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004217          202 S---GELLAVASGHK-LYIWRYNMREETS--SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (767)
Q Consensus       202 d---G~~LAsgSdd~-V~VWDl~t~~~~~--~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s  261 (767)
                      +   +++|++++.++ |++||++++....  .......|...|++++|+|+|+++++++.     +|++..
T Consensus       215 ~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          215 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             CCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             CCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            9   89999999666 9999998864221  11223458889999999999998887765     777764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1.8e-19  Score=218.69  Aligned_cols=163  Identities=8%  Similarity=0.065  Sum_probs=137.6

Q ss_pred             EEcCCCEEEEEeCCCeEEEEeCCCCCCC---------------CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC--
Q 004217           77 GRDARRGLASWVEAESLHHLRPKYCPLS---------------PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--  139 (767)
Q Consensus        77 ~sd~g~~LaSgs~DgsIrlWd~~t~~L~---------------gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg--  139 (767)
                      ++.++..|++++.|++|++||+.++.+.               +|...|.+|+|+|||++||+|+.||+|+|||+.++  
T Consensus       443 ~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~  522 (902)
T 2oaj_A          443 PAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQF  522 (902)
T ss_dssp             CCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC
T ss_pred             ccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccc
Confidence            3456889999999999999999876432               78899999999999999999999999999999866  


Q ss_pred             -------------------------------------------eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEE
Q 004217          140 -------------------------------------------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (767)
Q Consensus       140 -------------------------------------------~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrI  176 (767)
                                                                 +++..+.+|.+.|++++|+| ++ +|++|+.|++|+|
T Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~l  600 (902)
T 2oaj_A          523 YSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLML  600 (902)
T ss_dssp             ---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEE
T ss_pred             cCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEE
Confidence                                                       24678899999999999999 88 9999999999999


Q ss_pred             EECCCCeEEEe-----e--cCCCCeEEEEEc-----CCC---CEEEEEECCc-EEEEEc---CCCccccCCeEEecC---
Q 004217          177 WNASTAECIGS-----R--DFYRPIASIAFH-----ASG---ELLAVASGHK-LYIWRY---NMREETSSPRIVLRT---  234 (767)
Q Consensus       177 WDl~tg~~i~~-----l--~h~~~VtsVafS-----PdG---~~LAsgSdd~-V~VWDl---~t~~~~~~~~~l~~h---  234 (767)
                      ||++++..+..     +  .|...|++++|+     |||   ++|++|+.|+ |++||+   .+++...   .+.+|   
T Consensus       601 wd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~---~~~~~~~~  677 (902)
T 2oaj_A          601 IDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDV---QLMDITNV  677 (902)
T ss_dssp             EETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEE---EEEEEEEC
T ss_pred             EECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEE---EecCceec
Confidence            99998877542     2  578889999999     886   7999999766 999999   5555433   33343   


Q ss_pred             --CCCeEEEE-Ec
Q 004217          235 --RRSLRAVH-FH  244 (767)
Q Consensus       235 --~~~VtsVa-FS  244 (767)
                        .+.|.+++ |+
T Consensus       678 ~~~~~v~~i~~~~  690 (902)
T 2oaj_A          678 TSKGPIHKIDAFS  690 (902)
T ss_dssp             CSSCCCCEEEEEE
T ss_pred             CCCCceEEEEeEe
Confidence              57787777 76

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.81  E-value=2.7e-18  Score=184.70  Aligned_cols=185  Identities=8%  Similarity=-0.007  Sum_probs=145.2

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC--CCCCCCCeEEEEECCCCCeE-EEEeCCCeEEEEECCCCeEEEEEccC
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP--LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGH  148 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~--L~gH~~sVtsVaFSpDG~~L-ASgs~DGtVrVWDl~tg~~l~~L~gH  148 (767)
                      ..+++++.++..|++++.+ .+++|+....+  ...+...+..+++.++++.+ ++++.|++|+|||+.+++++..+. |
T Consensus        22 V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~   99 (355)
T 3vu4_A           22 VTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-V   99 (355)
T ss_dssp             CCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-C
T ss_pred             eEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-C
Confidence            5678888999999999866 47899987653  22233358889999988887 567788999999999999998887 6


Q ss_pred             CCCcEEEEEccCCC-----------------------------------cEEEE--EeCCCeEEEEECCCCe--------
Q 004217          149 RRTPWVVRFHPLNP-----------------------------------TIIAS--GSLDHEVRLWNASTAE--------  183 (767)
Q Consensus       149 ~~~V~sLafsP~dg-----------------------------------~lLaS--gS~DGtVrIWDl~tg~--------  183 (767)
                      ...|.++.|++ +.                                   .+++.  |+.||+|++||+.+++        
T Consensus       100 ~~~v~~v~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~  178 (355)
T 3vu4_A          100 DAPVKDLFLSR-EFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQG  178 (355)
T ss_dssp             SSCEEEEEECS-SEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC----------
T ss_pred             CCceEEEEEcC-CEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCcccccccc
Confidence            67899999887 31                                   23333  5788999999998765        


Q ss_pred             --------EEEe-ecCCCCeEEEEEcCCCCEEEEEECC-c-EEEEEcCCCccccCCeEEe-c-CCCCeEEEEEccCCCeE
Q 004217          184 --------CIGS-RDFYRPIASIAFHASGELLAVASGH-K-LYIWRYNMREETSSPRIVL-R-TRRSLRAVHFHPHAAPL  250 (767)
Q Consensus       184 --------~i~~-l~h~~~VtsVafSPdG~~LAsgSdd-~-V~VWDl~t~~~~~~~~~l~-~-h~~~VtsVaFSPDG~~L  250 (767)
                              ++.. ..|...|.+++|+|+|++|++++.| . |++||+++++.+.   .+. + |...|++++|+|||++|
T Consensus       179 ~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~---~~~~g~h~~~v~~~~~s~~~~~l  255 (355)
T 3vu4_A          179 VQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR---EFRRGLDRADVVDMKWSTDGSKL  255 (355)
T ss_dssp             --------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE---EEECTTCCSCEEEEEECTTSCEE
T ss_pred             ccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE---EEEcCCCCCcEEEEEECCCCCEE
Confidence                    1333 4589999999999999999999954 4 9999999988655   455 4 99999999999999988


Q ss_pred             EEEEe-----eCCcCCC
Q 004217          251 LLTAE-----VNDLDSS  262 (767)
Q Consensus       251 laSgs-----vwdl~s~  262 (767)
                      ++++.     +|++...
T Consensus       256 ~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          256 AVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEEETTCEEEEEESSCC
T ss_pred             EEEECCCEEEEEEccCC
Confidence            77665     7887653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.81  E-value=2.7e-19  Score=195.06  Aligned_cols=173  Identities=15%  Similarity=0.115  Sum_probs=126.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCC-CeEEEEeCCCeEEEEECCCCeEEEE----------
Q 004217           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCLKV----------  144 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG-~~LASgs~DGtVrVWDl~tg~~l~~----------  144 (767)
                      +++.|++++.|++|++||+.+.    .+.+|...|.+++|+|++ .+|++++.|++|++||+.+++....          
T Consensus       155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~  234 (393)
T 4gq1_A          155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP  234 (393)
T ss_dssp             EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred             CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence            6889999999999999998765    356899999999999977 4899999999999999988754322          


Q ss_pred             ---------------EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCe--------------
Q 004217          145 ---------------LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPI--------------  194 (767)
Q Consensus       145 ---------------L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~V--------------  194 (767)
                                     ..+|...|.++.|++.+++.+++++.|+++++||+.+++....+. +...+              
T Consensus       235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  314 (393)
T 4gq1_A          235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL  314 (393)
T ss_dssp             CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECS
T ss_pred             eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc
Confidence                           246788899999984489999999999999999998876544431 22222              


Q ss_pred             ----EEEEEcC-CCC-EEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          195 ----ASIAFHA-SGE-LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       195 ----tsVafSP-dG~-~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                          ....|+| .+. ++++|+.++ |++||+.+++...   ....|...|++|+|||||++|++++.
T Consensus       315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~---~~~~~~~~V~svafspdG~~LA~as~  379 (393)
T 4gq1_A          315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS---IPIQLGMPIVDFCWHQDGSHLAIATE  379 (393)
T ss_dssp             SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE---EEEECSSCEEEEEECTTSSEEEEEES
T ss_pred             cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE---EecCCCCcEEEEEEcCCCCEEEEEeC
Confidence                2233444 233 566666555 9999999887644   66788899999999999998776653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.81  E-value=6.4e-19  Score=202.77  Aligned_cols=181  Identities=15%  Similarity=0.120  Sum_probs=136.8

Q ss_pred             EEEEEEcCCCEEEEEeCCCeEE---------------------------EEeCCCC----CCC-CCCCCeEEEEECCCCC
Q 004217           73 IFEAGRDARRGLASWVEAESLH---------------------------HLRPKYC----PLS-PPPRSTIAAAFSPDGK  120 (767)
Q Consensus        73 ~~vA~sd~g~~LaSgs~DgsIr---------------------------lWd~~t~----~L~-gH~~sVtsVaFSpDG~  120 (767)
                      ..++++.+|+.+++++.|++|+                           .|+..+.    .+. .|...|.+++|||||+
T Consensus        19 ~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~   98 (588)
T 2j04_A           19 NNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDD   98 (588)
T ss_dssp             CCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSS
T ss_pred             EEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCC
Confidence            3466667777777777777773                           2333221    122 5688899999999999


Q ss_pred             eEEEEeCCCeEEEEECCCCeEEEEEccCCC-----CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE-------EEee
Q 004217          121 TLASTHGDHTVKIIDCQTGSCLKVLHGHRR-----TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-------IGSR  188 (767)
Q Consensus       121 ~LASgs~DGtVrVWDl~tg~~l~~L~gH~~-----~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~-------i~~l  188 (767)
                      +||+++.||+|+|||.++  ++..+. |..     .|.+++|+| ++++|++|+.||+|+|||+.++..       +..+
T Consensus        99 ~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti  174 (588)
T 2j04_A           99 WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSI  174 (588)
T ss_dssp             CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEE
T ss_pred             EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeee
Confidence            999999999999999654  677777 665     599999999 999999999999999999998752       4443


Q ss_pred             -----cCCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCccccCCeEE-ecCCCCeEEEEEccCCCeEEEEEe----eC
Q 004217          189 -----DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIV-LRTRRSLRAVHFHPHAAPLLLTAE----VN  257 (767)
Q Consensus       189 -----~h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~~~~~l-~~h~~~VtsVaFSPDG~~LlaSgs----vw  257 (767)
                           +|...|.+++|+|+|  +++++ |+.|++||+...........+ .+|...|.+++|+  |+.|++++.    +|
T Consensus       175 ~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLW  250 (588)
T 2j04_A          175 RLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKI  250 (588)
T ss_dssp             ECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEE
T ss_pred             ecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEE
Confidence                 366799999999999  55555 555999999877632111234 3788999999999  576766654    66


Q ss_pred             CcCC
Q 004217          258 DLDS  261 (767)
Q Consensus       258 dl~s  261 (767)
                      ++..
T Consensus       251 d~~~  254 (588)
T 2j04_A          251 DLKN  254 (588)
T ss_dssp             ETTT
T ss_pred             ECCC
Confidence            6654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.81  E-value=6.1e-19  Score=192.09  Aligned_cols=161  Identities=13%  Similarity=0.071  Sum_probs=124.9

Q ss_pred             CCCeEEEEeCCC-CC----CCCCCCCeEEEEECC---CCCeEEEEeCCCeEEEEECCCCeEEEEEccCC---CCcEEEEE
Q 004217           89 EAESLHHLRPKY-CP----LSPPPRSTIAAAFSP---DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR---RTPWVVRF  157 (767)
Q Consensus        89 ~DgsIrlWd~~t-~~----L~gH~~sVtsVaFSp---DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~---~~V~sLaf  157 (767)
                      .|+.|++|++.. ++    +.+|...++.++|++   |+.+|++++.|++|||||+++|+++++|.+|.   ..+.+++|
T Consensus       155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf  234 (356)
T 2w18_A          155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY  234 (356)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred             CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence            488999999844 42    457888888888888   77999999999999999999999999998754   36778899


Q ss_pred             ccCCCcEE------------EEEeCCCeEEEEECCCCeEEEee------cCCCCeEEEEEcCCCCEEEEEECCc-EEEEE
Q 004217          158 HPLNPTII------------ASGSLDHEVRLWNASTAECIGSR------DFYRPIASIAFHASGELLAVASGHK-LYIWR  218 (767)
Q Consensus       158 sP~dg~lL------------aSgS~DGtVrIWDl~tg~~i~~l------~h~~~VtsVafSPdG~~LAsgSdd~-V~VWD  218 (767)
                      +| ++.++            ++|+.|++|++||..+++++..+      +|...+.+..+  ++.++++++.|+ |+|||
T Consensus       235 Sp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWD  311 (356)
T 2w18_A          235 SE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWD  311 (356)
T ss_dssp             EE-TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEE
T ss_pred             CC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEE
Confidence            99 78776            67889999999999999987764      34444444444  488999999655 99999


Q ss_pred             cCCCccccCCeEEecCCCCeE-EEEEccCCCeEEEEEe
Q 004217          219 YNMREETSSPRIVLRTRRSLR-AVHFHPHAAPLLLTAE  255 (767)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~Vt-sVaFSPDG~~LlaSgs  255 (767)
                      +.+++.+.   .+.+|...+. .++|+|||++|++++.
T Consensus       312 l~tGk~l~---tL~gH~~~vvs~vafSPDG~~LaSGS~  346 (356)
T 2w18_A          312 LLLGQCTA---LLPPVSDQHWSFVKWSGTDSHLLAGQK  346 (356)
T ss_dssp             TTTCSEEE---EECCC--CCCCEEEECSSSSEEEEECT
T ss_pred             CCCCcEEE---EecCCCCCeEEEEEECCCCCEEEEEEC
Confidence            99998765   6777877655 6899999997776654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.81  E-value=6e-18  Score=186.66  Aligned_cols=228  Identities=14%  Similarity=0.101  Sum_probs=168.6

Q ss_pred             CCEEEEEeCC------CeEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeCCC---eEEEEECCCCeEEEEEccC
Q 004217           81 RRGLASWVEA------ESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDH---TVKIIDCQTGSCLKVLHGH  148 (767)
Q Consensus        81 g~~LaSgs~D------gsIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~DG---tVrVWDl~tg~~l~~L~gH  148 (767)
                      +..++..+.+      +.|++||....   .+.+|...|.+++|||||++|++++.|+   .|++||+.+++.. .+..|
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~  221 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF  221 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECC
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecC
Confidence            4555555544      79999999764   3568999999999999999999999885   9999999998865 56778


Q ss_pred             CCCcEEEEEccCCCcEEE-EEeCCCe--EEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC-C---cEEEEEcCC
Q 004217          149 RRTPWVVRFHPLNPTIIA-SGSLDHE--VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-H---KLYIWRYNM  221 (767)
Q Consensus       149 ~~~V~sLafsP~dg~lLa-SgS~DGt--VrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd-d---~V~VWDl~t  221 (767)
                      ...+.+++|+| +++.|+ +++.|+.  |++||+.+++......+...+.+++|+|+|++|+++++ +   .|++||+.+
T Consensus       222 ~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~  300 (415)
T 2hqs_A          222 PRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING  300 (415)
T ss_dssp             SSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             CCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC
Confidence            88999999999 777666 7776654  99999999888666678889999999999999988885 3   388889887


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCC
Q 004217          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPL  301 (767)
Q Consensus       222 ~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~  301 (767)
                      ++.    ..+..+...+.+++|+|||++|++++....                    ...+.+++...+....+...   
T Consensus       301 ~~~----~~l~~~~~~~~~~~~spdG~~l~~~~~~~g--------------------~~~i~~~d~~~~~~~~l~~~---  353 (415)
T 2hqs_A          301 GAP----QRITWEGSQNQDADVSSDGKFMVMVSSNGG--------------------QQHIAKQDLATGGVQVLSST---  353 (415)
T ss_dssp             SCC----EECCCSSSEEEEEEECTTSSEEEEEEECSS--------------------CEEEEEEETTTCCEEECCCS---
T ss_pred             CCE----EEEecCCCcccCeEECCCCCEEEEEECcCC--------------------ceEEEEEECCCCCEEEecCC---
Confidence            653    234556778999999999998887764210                    02345555443332222111   


Q ss_pred             CCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCc
Q 004217          302 ITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQ  353 (767)
Q Consensus       302 ~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q  353 (767)
                        .....++|+|||+.|+....+.              ....+..||..++.
T Consensus       354 --~~~~~~~~spdg~~l~~~s~~~--------------~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          354 --FLDETPSLAPNGTMVIYSSSQG--------------MGSVLNLVSTDGRF  389 (415)
T ss_dssp             --SSCEEEEECTTSSEEEEEEEET--------------TEEEEEEEETTSCC
T ss_pred             --CCcCCeEEcCCCCEEEEEEcCC--------------CccEEEEEECCCCc
Confidence              1455799999999998744321              12367788876443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.80  E-value=6e-18  Score=185.63  Aligned_cols=169  Identities=20%  Similarity=0.317  Sum_probs=146.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE---EEEccCCCCc
Q 004217           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL---KVLHGHRRTP  152 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l---~~L~gH~~~V  152 (767)
                      ++..|++++.|+.|++||..++    .+.+|...|.+++|+  +.+|++|+.|+.|++||+.+++.+   ..+.+|...|
T Consensus       182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v  259 (435)
T 1p22_A          182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV  259 (435)
T ss_dssp             CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence            7889999999999999999887    467899999999997  459999999999999999987654   6788999999


Q ss_pred             EEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeE
Q 004217          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRI  230 (767)
Q Consensus       153 ~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~  230 (767)
                      .+++|   +++++++|+.|++|++||+++++++..+. |...|.+++|  ++++|++|+.++ |++||+++++.+.   .
T Consensus       260 ~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~---~  331 (435)
T 1p22_A          260 NVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR---V  331 (435)
T ss_dssp             EEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEE---E
T ss_pred             EEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEE---E
Confidence            99999   46899999999999999999999988865 8889999999  467999999665 9999999987655   6


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEe-----eCCcC
Q 004217          231 VLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLD  260 (767)
Q Consensus       231 l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~  260 (767)
                      +.+|...|.+++|  ++.++++++.     +||+.
T Consensus       332 ~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~  364 (435)
T 1p22_A          332 LEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLV  364 (435)
T ss_dssp             ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHH
T ss_pred             EeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECC
Confidence            7789999999999  6776766654     55554

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.79  E-value=2.7e-17  Score=178.24  Aligned_cols=231  Identities=8%  Similarity=0.029  Sum_probs=173.5

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEE-EeCCCeEEEEECCCCeEEEEEc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLAS-THGDHTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LAS-gs~DGtVrVWDl~tg~~l~~L~  146 (767)
                      ...+++..++..+++++.|+.|++||..+++    +..|...+.+++|+|++++|++ ++.|+.|++||+++++.+..+.
T Consensus       172 v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~  251 (433)
T 3bws_A          172 VETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD  251 (433)
T ss_dssp             EEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC
T ss_pred             eeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec
Confidence            4456667788999999999999999998763    5578899999999999998854 4579999999999999888887


Q ss_pred             cCCCCcEEEEEccCCCcEEEEEe--------CCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEE-EC-CcEEE
Q 004217          147 GHRRTPWVVRFHPLNPTIIASGS--------LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVA-SG-HKLYI  216 (767)
Q Consensus       147 gH~~~V~sLafsP~dg~lLaSgS--------~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsg-Sd-d~V~V  216 (767)
                      .+ ..+.+++|+| +++++++++        .|+.|++||+.+++.+..+.+...+.+++|+|++++++++ +. +.|++
T Consensus       252 ~~-~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v  329 (433)
T 3bws_A          252 KI-GLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEV  329 (433)
T ss_dssp             CC-SEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEE
T ss_pred             CC-CCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEE
Confidence            54 4589999999 888888877        5889999999999988888777789999999999866554 44 44999


Q ss_pred             EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCcee
Q 004217          217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLA  296 (767)
Q Consensus       217 WDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~  296 (767)
                      ||+.+++...    ...+...+.+++|+|+|+++++++...+......     ...|.   ....+.+|+..........
T Consensus       330 ~d~~~~~~~~----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~-----~~~g~---~dg~v~~~d~~~~~~~~~~  397 (433)
T 3bws_A          330 YDLKEKKVQK----SIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGY-----LKKGL---VLGKVYVIDTTTDTVKEFW  397 (433)
T ss_dssp             EETTTTEEEE----EEECSSSEEEEEECTTSSEEEEEECCCCCTTTCT-----TSCCS---SCCEEEEEETTTTEEEEEE
T ss_pred             EECCCCcEEE----EecCCCCCCeEEEcCCCCEEEEEecCCCcccccc-----ccccc---cceEEEEEECCCCcEEEEe
Confidence            9999876544    3347788999999999998877765322110000     00111   1245677775544333322


Q ss_pred             eccCCCCCCceeeEEecCCCEEEE
Q 004217          297 EEVPLITPPFLRPSFVRDDERISL  320 (767)
Q Consensus       297 sg~~~~slpil~psFSpDg~rIva  320 (767)
                      ..    ......++|+||++++++
T Consensus       398 ~~----~~~~~~~~~s~dg~~l~~  417 (433)
T 3bws_A          398 EA----GNQPTGLDVSPDNRYLVI  417 (433)
T ss_dssp             EC----SSSEEEEEECTTSCEEEE
T ss_pred             cC----CCCCceEEEcCCCCEEEE
Confidence            22    223457899999999987

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.78  E-value=5e-18  Score=182.56  Aligned_cols=175  Identities=11%  Similarity=0.066  Sum_probs=130.7

Q ss_pred             cCCCEE-EEEeCCCeEEEEeCCCCCC---CCCCCCeEEEEECCCC-----------------------------------
Q 004217           79 DARRGL-ASWVEAESLHHLRPKYCPL---SPPPRSTIAAAFSPDG-----------------------------------  119 (767)
Q Consensus        79 d~g~~L-aSgs~DgsIrlWd~~t~~L---~gH~~sVtsVaFSpDG-----------------------------------  119 (767)
                      .....+ ++++.|++|++||..+++.   ..|...|.+++|+++.                                   
T Consensus        68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~  147 (355)
T 3vu4_A           68 HRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSN  147 (355)
T ss_dssp             TTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEET
T ss_pred             CCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEc
Confidence            334444 4566677888888776521   1355577777776642                                   


Q ss_pred             CeEEE--EeCCCeEEEEECCCCe----------------EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCe-EEEEECC
Q 004217          120 KTLAS--THGDHTVKIIDCQTGS----------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE-VRLWNAS  180 (767)
Q Consensus       120 ~~LAS--gs~DGtVrVWDl~tg~----------------~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGt-VrIWDl~  180 (767)
                      ++++.  |+.||.|++||+.+++                ++..+.+|...|.+++|+| ++++|++|+.|++ |++||++
T Consensus       148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~  226 (355)
T 3vu4_A          148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTE  226 (355)
T ss_dssp             TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETT
T ss_pred             cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECC
Confidence            34444  4778999999998765                2678899999999999999 9999999999998 9999999


Q ss_pred             CCeEEEeec---CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEE---------------------ecCC
Q 004217          181 TAECIGSRD---FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV---------------------LRTR  235 (767)
Q Consensus       181 tg~~i~~l~---h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l---------------------~~h~  235 (767)
                      +++++..+.   |...|.+++|+|+|++|++++.|+ |++||++...... ...+                     ....
T Consensus       227 ~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (355)
T 3vu4_A          227 DGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNK-RHALKGWINMKYFQSEWSLCNFKLSVDKH  305 (355)
T ss_dssp             TCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCC-SEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred             CCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcc-cccccceeeccccccccceeEEEeccCCC
Confidence            999998875   899999999999999999999766 9999998654211 0000                     0112


Q ss_pred             CCeEEEEEccCCCeEEEEEe
Q 004217          236 RSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       236 ~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .....++|++|++++++.+.
T Consensus       306 ~~~~~~a~~~d~~~l~~~~~  325 (355)
T 3vu4_A          306 VRGCKIAWISESSLVVVWPH  325 (355)
T ss_dssp             CCCCEEEESSSSEEEEEETT
T ss_pred             CCceEEEEeCCCCEEEEEeC
Confidence            23467999999997777654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.76  E-value=1.1e-16  Score=171.11  Aligned_cols=190  Identities=16%  Similarity=0.187  Sum_probs=153.1

Q ss_pred             ceEEEEEEcCCCEEE-EEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeE-EEEeCCCeEEEEECCCCeEEEEE
Q 004217           71 SQIFEAGRDARRGLA-SWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        71 s~~~vA~sd~g~~La-Sgs~DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~L-ASgs~DGtVrVWDl~tg~~l~~L  145 (767)
                      ....++++.++..|+ ++..++.|++||..+++   ...+...+.+++|+||+++| ++++.|+.|++||+.+++.+..+
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~  154 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV  154 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            466777888888775 55577999999998873   22345678999999999987 68888999999999999998888


Q ss_pred             ccCCCCcEEEEEccCCCcEE-EEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE---C-CcEEEEEcC
Q 004217          146 HGHRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS---G-HKLYIWRYN  220 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lL-aSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS---d-d~V~VWDl~  220 (767)
                      ..| ..+..++|+| +++.+ ++++.|+.|++||+++++.+..+.+...+.+++|+|+|++|++++   . +.|++||++
T Consensus       155 ~~~-~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~  232 (391)
T 1l0q_A          155 SVG-RSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (391)
T ss_dssp             ECC-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             ecC-CCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence            765 4579999999 66655 788899999999999999998888888999999999999888887   3 449999999


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcce
Q 004217          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSL  266 (767)
Q Consensus       221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~~~  266 (767)
                      +++.+.   .+..| ..+.+++|+|+++++++++.      +||+..++...
T Consensus       233 ~~~~~~---~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~  280 (391)
T 1l0q_A          233 TNKITA---RIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITA  280 (391)
T ss_dssp             TTEEEE---EEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCeEEE---EEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEE
Confidence            887544   34444 46899999999998876653      77777554433

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.74  E-value=3.8e-17  Score=178.03  Aligned_cols=140  Identities=11%  Similarity=0.130  Sum_probs=112.7

Q ss_pred             EcCCCEEEEEeCCCeEEEEeCCCCC----CCCC---CCCeEEEEECCCCCeE------------EEEeCCCeEEEEECCC
Q 004217           78 RDARRGLASWVEAESLHHLRPKYCP----LSPP---PRSTIAAAFSPDGKTL------------ASTHGDHTVKIIDCQT  138 (767)
Q Consensus        78 sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH---~~sVtsVaFSpDG~~L------------ASgs~DGtVrVWDl~t  138 (767)
                      ..++..|++++.|++|++||+++++    +.+|   ...+.+++|+|||+++            ++|+.|++|++||..+
T Consensus       190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t  269 (356)
T 2w18_A          190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT  269 (356)
T ss_dssp             ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred             CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence            4478999999999999999999884    4444   3478889999999986            5688899999999999


Q ss_pred             CeEEEEE-----ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCe-EEEEEcCCCCEEEEEEC
Q 004217          139 GSCLKVL-----HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPI-ASIAFHASGELLAVASG  211 (767)
Q Consensus       139 g~~l~~L-----~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~V-tsVafSPdG~~LAsgSd  211 (767)
                      ++.+..+     .+|...+.+..+   ++.++++++.|++|+|||+.+++++.++. |...+ .+++|+|||++|++|+.
T Consensus       270 gk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~  346 (356)
T 2w18_A          270 TLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK  346 (356)
T ss_dssp             TEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT
T ss_pred             CEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC
Confidence            9988766     477766554444   46899999999999999999999999986 65554 46899999999999997


Q ss_pred             Cc-EEEEEcC
Q 004217          212 HK-LYIWRYN  220 (767)
Q Consensus       212 d~-V~VWDl~  220 (767)
                      |+ |+|||+.
T Consensus       347 D~TIklWd~~  356 (356)
T 2w18_A          347 DGNIFVYHYS  356 (356)
T ss_dssp             TSCEEEEEEC
T ss_pred             CCcEEEecCC
Confidence            76 9999963

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.73  E-value=4.3e-16  Score=171.78  Aligned_cols=177  Identities=15%  Similarity=0.097  Sum_probs=144.5

Q ss_pred             eEEEEEEcCCCEEEEEeCCC---eEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEE-EEeCCC--eEEEEECCCCeEE
Q 004217           72 QIFEAGRDARRGLASWVEAE---SLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLA-STHGDH--TVKIIDCQTGSCL  142 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~Dg---sIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LA-Sgs~DG--tVrVWDl~tg~~l  142 (767)
                      ....+++.+++.|+.++.++   .|++||+.+++   +..|...+.+++|+|||++|+ +++.|+  .|++||+.+++. 
T Consensus       181 v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-  259 (415)
T 2hqs_A          181 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-  259 (415)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-
T ss_pred             ceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-
Confidence            56677888999999999875   99999998773   567888999999999999888 666555  499999998875 


Q ss_pred             EEEccCCCCcEEEEEccCCCcEEEEEeC-CC--eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC----cEE
Q 004217          143 KVLHGHRRTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLY  215 (767)
Q Consensus       143 ~~L~gH~~~V~sLafsP~dg~lLaSgS~-DG--tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd----~V~  215 (767)
                      ..+..|...+.+++|+| +++.|++++. ++  .|.+||+.+++......+...+.+++|+|+|++|++++.+    .|+
T Consensus       260 ~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~  338 (415)
T 2hqs_A          260 RQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIA  338 (415)
T ss_dssp             EECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred             EeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEE
Confidence            67778889999999999 8888887776 44  6888899988765555567788999999999999888742    399


Q ss_pred             EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       216 VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +||+.+++..    .+..+. .+.+++|+|||++|++++.
T Consensus       339 ~~d~~~~~~~----~l~~~~-~~~~~~~spdg~~l~~~s~  373 (415)
T 2hqs_A          339 KQDLATGGVQ----VLSSTF-LDETPSLAPNGTMVIYSSS  373 (415)
T ss_dssp             EEETTTCCEE----ECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred             EEECCCCCEE----EecCCC-CcCCeEEcCCCCEEEEEEc
Confidence            9999987652    234443 8999999999998887764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.73  E-value=3e-17  Score=182.94  Aligned_cols=178  Identities=15%  Similarity=0.108  Sum_probs=140.1

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-----------C--------CCCCCCCeEEEEECCCCCeEE----EEeCC
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----------P--------LSPPPRSTIAAAFSPDGKTLA----STHGD  128 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-----------~--------L~gH~~sVtsVaFSpDG~~LA----Sgs~D  128 (767)
                      ..+++++..+..++.++.++ +++|+....           .        ...|...|.+++|+|||++|+    +|+.|
T Consensus        39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d  117 (434)
T 2oit_A           39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG  117 (434)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred             ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence            44567778889999998887 888764311           0        113556799999999999999    78889


Q ss_pred             CeEEEEECCCC--------e---EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEE
Q 004217          129 HTVKIIDCQTG--------S---CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIAS  196 (767)
Q Consensus       129 GtVrVWDl~tg--------~---~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~Vts  196 (767)
                      ++|+|||+.++        +   .+..+.+|...|.+++|+|.++++|++++.|++|++||++++..+.. ..|...|.+
T Consensus       118 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~  197 (434)
T 2oit_A          118 SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTS  197 (434)
T ss_dssp             EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEE
T ss_pred             ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeE
Confidence            99999998654        2   24566789999999999995589999999999999999999876544 457889999


Q ss_pred             EEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEec-------CCCCeEEEEEccCCCeEEEEE
Q 004217          197 IAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLR-------TRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       197 VafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~-------h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      ++|+|+|++|++|+.++ |++||++ ++...   .+..       |...|.+++|++++.++++.+
T Consensus       198 v~wspdg~~lasgs~dg~v~iwd~~-~~~~~---~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~  259 (434)
T 2oit_A          198 VCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK---VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYA  259 (434)
T ss_dssp             EEECTTSSCEEEEETTSCEEEECTT-CCEEE---EECCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred             EEEcCCCCEEEEEcCCCcEEEEccC-Ccccc---cccCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence            99999999999999765 9999998 33222   1222       334899999999988766554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.71  E-value=2.3e-15  Score=157.04  Aligned_cols=175  Identities=9%  Similarity=0.068  Sum_probs=134.4

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCCeEEEEeC-CCeEEEEECCCCeE-EEEEccCCCCc
Q 004217           79 DARRGLASWVEAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSC-LKVLHGHRRTP  152 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~~L----~gH~~sVtsVaFSpDG~~LASgs~-DGtVrVWDl~tg~~-l~~L~gH~~~V  152 (767)
                      +.+..+++...++.|.+||..++++    ..+...+ .++|+|||++|++++. ++.|++||+.+++. ...+..+....
T Consensus         8 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~   86 (331)
T 3u4y_A            8 TSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM   86 (331)
T ss_dssp             CCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC
T ss_pred             CCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc
Confidence            3455577788899999999988742    3445556 9999999997776665 88999999999987 77777776666


Q ss_pred             EEEEEccCCCcEEEEEeCCC---eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE--CCc-EEEEEcCCCcccc
Q 004217          153 WVVRFHPLNPTIIASGSLDH---EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHK-LYIWRYNMREETS  226 (767)
Q Consensus       153 ~sLafsP~dg~lLaSgS~DG---tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS--dd~-V~VWDl~t~~~~~  226 (767)
                      .+++|+| ++++++++..++   .|.+||+.+++.+..+.......+++|+|+|++|++++  ++. |.+|++.......
T Consensus        87 ~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~  165 (331)
T 3u4y_A           87 ADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF  165 (331)
T ss_dssp             CCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             cceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe
Confidence            6599999 888888555553   89999999999988888777889999999998665554  367 9999998654322


Q ss_pred             CC-eEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          227 SP-RIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       227 ~~-~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .. .........+..++|+|||+++++++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~  195 (331)
T 3u4y_A          166 DTGQEFISGGTRPFNITFTPDGNFAFVANL  195 (331)
T ss_dssp             EEEEEEECSSSSEEEEEECTTSSEEEEEET
T ss_pred             ecCCccccCCCCccceEECCCCCEEEEEeC
Confidence            11 122344566899999999998777653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.71  E-value=2.9e-15  Score=171.99  Aligned_cols=271  Identities=11%  Similarity=0.054  Sum_probs=193.0

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeC--CCCC----CCCCCCCeEEEEECC----CCCeEEEEeC-CCeEEEEECCCCe
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRP--KYCP----LSPPPRSTIAAAFSP----DGKTLASTHG-DHTVKIIDCQTGS  140 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~--~t~~----L~gH~~sVtsVaFSp----DG~~LASgs~-DGtVrVWDl~tg~  140 (767)
                      .-.++++.+++.|++++.|++|++||+  .+.+    +. +...+..++|+|    ||++|++++. +++|.|||..+++
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~  259 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  259 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence            556778899999999999999999999  6652    22 455689999999    9999999885 8999999999999


Q ss_pred             EEEEEccC----------CC-CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEE--eecCCCCeEEEEEcCCCCEEE
Q 004217          141 CLKVLHGH----------RR-TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG--SRDFYRPIASIAFHASGELLA  207 (767)
Q Consensus       141 ~l~~L~gH----------~~-~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~--~l~h~~~VtsVafSPdG~~LA  207 (767)
                      ++..+..+          .. .+..+.++|++..++++...+++|.+||+.+.+.+.  .+.+...+..++|+|+|++|+
T Consensus       260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~  339 (543)
T 1nir_A          260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFM  339 (543)
T ss_dssp             EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEE
T ss_pred             cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEE
Confidence            99888642          23 788999999667788888899999999999876544  456677788999999999887


Q ss_pred             EEE--CCcEEEEEcCCCccccCCeEEe----cCCCCeEEEEEccCCCeEEEEEe-------eCCcCC-------CCccee
Q 004217          208 VAS--GHKLYIWRYNMREETSSPRIVL----RTRRSLRAVHFHPHAAPLLLTAE-------VNDLDS-------SESSLT  267 (767)
Q Consensus       208 sgS--dd~V~VWDl~t~~~~~~~~~l~----~h~~~VtsVaFSPDG~~LlaSgs-------vwdl~s-------~~~~~~  267 (767)
                      +++  ++.|.+||+.+++...   .+.    .|......+ ++|++..+++++.       +|+++.       ++....
T Consensus       340 va~~~~~~v~v~D~~tg~l~~---~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~  415 (543)
T 1nir_A          340 TAANNSNKVAVIDSKDRRLSA---LVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE  415 (543)
T ss_dssp             EEEGGGTEEEEEETTTTEEEE---EEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred             EEecCCCeEEEEECCCCeEEE---eeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEE
Confidence            776  4569999999987654   232    254444343 5788555555542       788877       555555


Q ss_pred             EeecCCC---ccC-C-----------------CCeEEEecCCCCCCC-cee-e----ccCCCCCCceeeEEecCCCEEEE
Q 004217          268 LATSPGY---WRY-P-----------------PPVICMAGAHSSSHP-GLA-E----EVPLITPPFLRPSFVRDDERISL  320 (767)
Q Consensus       268 l~t~sG~---~~~-p-----------------~~~v~l~~~~Ssd~~-~L~-s----g~~~~slpil~psFSpDg~rIva  320 (767)
                      +....+.   +.+ |                 ...+.+++..+.+.. ... .    +.+......+.+.|++||+.+++
T Consensus       416 l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~  495 (543)
T 1nir_A          416 LQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF  495 (543)
T ss_dssp             EECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEE
T ss_pred             EEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEE
Confidence            5543222   111 1                 125666666555443 211 1    12233456668999999999997


Q ss_pred             eecCCCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217          321 QHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS  359 (767)
Q Consensus       321 ~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~  359 (767)
                      .--         +   ..+....+..||..+++....|.
T Consensus       496 s~~---------~---~~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          496 SVW---------N---GKNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             EEE---------C---CTTSCCEEEEEETTTTEEEEEEC
T ss_pred             Eee---------c---CCCCCCeEEEEECCCceEEEeec
Confidence            110         0   01123467789999999999885

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.71  E-value=3e-15  Score=150.69  Aligned_cols=235  Identities=10%  Similarity=0.041  Sum_probs=159.7

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCC-CC----CCCC-CCCeEEEEECCCCCeEEEEeC--CC--eEEEEECCCCeE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKY-CP----LSPP-PRSTIAAAFSPDGKTLASTHG--DH--TVKIIDCQTGSC  141 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t-~~----L~gH-~~sVtsVaFSpDG~~LASgs~--DG--tVrVWDl~tg~~  141 (767)
                      ...++++.++..|+++. ++.|++||..+ ++    +..| ...+.+++|+|||++|++++.  ++  .|.+||..+++ 
T Consensus        44 v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-  121 (297)
T 2ojh_A           44 FEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-  121 (297)
T ss_dssp             CEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-
T ss_pred             eEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-
Confidence            55677888999999886 78999999988 63    2344 367899999999999999983  34  45555555555 


Q ss_pred             EEEEccCCCCcEEEEEccCCCcEEE-EEeCCCeEEEEEC--CCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC--CcEEE
Q 004217          142 LKVLHGHRRTPWVVRFHPLNPTIIA-SGSLDHEVRLWNA--STAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYI  216 (767)
Q Consensus       142 l~~L~gH~~~V~sLafsP~dg~lLa-SgS~DGtVrIWDl--~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd--d~V~V  216 (767)
                      ...+..+. .+..++|+| +++.|+ ++..|+.++||++  .+++......+...+.+++|+|+|++|++++.  +.+++
T Consensus       122 ~~~~~~~~-~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i  199 (297)
T 2ojh_A          122 PRLMTKNL-PSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQI  199 (297)
T ss_dssp             CEECCSSS-SEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             eEEeecCC-CccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccE
Confidence            44454443 488999999 777655 7889999999985  45555555667788999999999998887763  44888


Q ss_pred             EEcCC-CccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCce
Q 004217          217 WRYNM-REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGL  295 (767)
Q Consensus       217 WDl~t-~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L  295 (767)
                      |+++. ....   ..+..|...+..++|+|+|++|++++.........            .+....+.+++...+....+
T Consensus       200 ~~~~~~~~~~---~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~------------~~~~~~l~~~d~~~~~~~~~  264 (297)
T 2ojh_A          200 WRVRVDGSSV---ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHP------------RDLDVRVQLMDMDGGNVETL  264 (297)
T ss_dssp             EEEETTSSCE---EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCC------------SSEEEEEEEEETTSCSCEEE
T ss_pred             EEECCCCCCc---EEEecCCcccCCeEECCCCCEEEEEEcCCCCCccc------------ccCceEEEEEecCCCCceee
Confidence            88863 3322   34566777899999999999888776532211000            00112355555444333222


Q ss_pred             eeccCCCCCCceeeEEecCCCEEEEeecCCC
Q 004217          296 AEEVPLITPPFLRPSFVRDDERISLQHTEHD  326 (767)
Q Consensus       296 ~sg~~~~slpil~psFSpDg~rIva~~~~~d  326 (767)
                      ... ......+..++|+||+++|++...+..
T Consensus       265 ~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~  294 (297)
T 2ojh_A          265 FDL-FGGQGTMNSPNWSPDGDEFAYVRYFPV  294 (297)
T ss_dssp             EEE-EESTTTSCSCCBCTTSSEEEEEEECCC
T ss_pred             ecc-CCCCcccccceECCCCCEEEEEEeccC
Confidence            221 112234556899999999998666543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.71  E-value=1.5e-15  Score=152.97  Aligned_cols=231  Identities=11%  Similarity=0.045  Sum_probs=157.3

Q ss_pred             EeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC-CeEEEEEccCC-CCcEEEEEccCC
Q 004217           87 WVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-GSCLKVLHGHR-RTPWVVRFHPLN  161 (767)
Q Consensus        87 gs~DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t-g~~l~~L~gH~-~~V~sLafsP~d  161 (767)
                      .+.++.|++||..+++   +..|...|.+++|+|||++|++++ ++.|++||+.+ ++....+.+|. ..+.+++|+| +
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-d   95 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-D   95 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-T
T ss_pred             CCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC-C
Confidence            4578899999998773   567889999999999999999987 78999999999 88776666663 6788999999 8


Q ss_pred             CcEEEEEe--CCCeEEE--EECCCCeEEEeecCCCCeEEEEEcCCCCEEE-EEE-CCcEEEEEcCCCccccCCeEEecCC
Q 004217          162 PTIIASGS--LDHEVRL--WNASTAECIGSRDFYRPIASIAFHASGELLA-VAS-GHKLYIWRYNMREETSSPRIVLRTR  235 (767)
Q Consensus       162 g~lLaSgS--~DGtVrI--WDl~tg~~i~~l~h~~~VtsVafSPdG~~LA-sgS-dd~V~VWDl~t~~~~~~~~~l~~h~  235 (767)
                      +++|++++  .++.++|  ||+.+++. ..+.....+..++|+|+|++|+ ++. ++.++||+++....  ....+..+.
T Consensus        96 g~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~  172 (297)
T 2ojh_A           96 GALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG--VETRLTHGE  172 (297)
T ss_dssp             SSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC--CEEECCCSS
T ss_pred             CCEEEEEEeCCCCcceEEEEECCCCce-EEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC--cceEcccCC
Confidence            89999988  3344455  45555553 3444445589999999999877 454 45588888653321  123456677


Q ss_pred             CCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceee
Q 004217          236 RSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRP  309 (767)
Q Consensus       236 ~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~p  309 (767)
                      ..+.+++|+|+|+++++++.      +|+++..                          . .......   .....+..+
T Consensus       173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~--------------------------~-~~~~~~~---~~~~~~~~~  222 (297)
T 2ojh_A          173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD--------------------------G-SSVERIT---DSAYGDWFP  222 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--------------------------S-SCEEECC---CCSEEEEEE
T ss_pred             CccccceECCCCCEEEEEecCCCCccEEEECCC--------------------------C-CCcEEEe---cCCcccCCe
Confidence            88999999999998887764      2222210                          0 0000000   011233468


Q ss_pred             EEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217          310 SFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       310 sFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                      .|+||+++|++...+....      ..+......+..||..+++.....
T Consensus       223 ~~s~dg~~l~~~~~~~~~~------~~~~~~~~~l~~~d~~~~~~~~~~  265 (297)
T 2ojh_A          223 HPSPSGDKVVFVSYDADVF------DHPRDLDVRVQLMDMDGGNVETLF  265 (297)
T ss_dssp             EECTTSSEEEEEEEETTCC------SCCSSEEEEEEEEETTSCSCEEEE
T ss_pred             EECCCCCEEEEEEcCCCCC------cccccCceEEEEEecCCCCceeee
Confidence            9999999998854432210      011123457889999887765554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.69  E-value=9.2e-15  Score=152.94  Aligned_cols=240  Identities=10%  Similarity=0.034  Sum_probs=168.7

Q ss_pred             eEEEEEEcCCCEEEEEeC-------CCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCeEEEE-eCCCeEEEEECCCCe
Q 004217           72 QIFEAGRDARRGLASWVE-------AESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGS  140 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~-------DgsIrlWd~~t~~L~---gH~~sVtsVaFSpDG~~LASg-s~DGtVrVWDl~tg~  140 (767)
                      ...++++.+++.++..+.       ++.|.+||..+++..   .....+..++|++||++++.+ ..++.|.+||.++++
T Consensus        43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~  122 (353)
T 3vgz_A           43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGE  122 (353)
T ss_dssp             EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCC
T ss_pred             ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCe
Confidence            556777888888887774       568999999877422   223457889999999966554 557999999999999


Q ss_pred             EEEEEccCCCC---------cEEEEEccCCCcEEEEEe--CCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEE
Q 004217          141 CLKVLHGHRRT---------PWVVRFHPLNPTIIASGS--LDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAV  208 (767)
Q Consensus       141 ~l~~L~gH~~~---------V~sLafsP~dg~lLaSgS--~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAs  208 (767)
                      .+..+..+...         +..+.|+| ++++++.++  .++.|.+||..+++.+..+. +...+..++|+|+|++|++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  201 (353)
T 3vgz_A          123 VKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYT  201 (353)
T ss_dssp             EEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEE
T ss_pred             eEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEE
Confidence            88888765432         68899999 777655554  58899999999999998887 6666889999999999988


Q ss_pred             EECCc-EEEEEcCCCccccCCeEEe----cCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEE
Q 004217          209 ASGHK-LYIWRYNMREETSSPRIVL----RTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVIC  283 (767)
Q Consensus       209 gSdd~-V~VWDl~t~~~~~~~~~l~----~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~  283 (767)
                      ++.++ |.+||+.+++...   ...    ++...+..++|+|||++++++....                      ..+.
T Consensus       202 ~~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----------------------~~v~  256 (353)
T 3vgz_A          202 TNADGELITIDTADNKILS---RKKLLDDGKEHFFINISLDTARQRAFITDSKA----------------------AEVL  256 (353)
T ss_dssp             ECTTSEEEEEETTTTEEEE---EEECCCSSSCCCEEEEEEETTTTEEEEEESSS----------------------SEEE
T ss_pred             EcCCCeEEEEECCCCeEEE---EEEcCCCCCCcccceEEECCCCCEEEEEeCCC----------------------CEEE
Confidence            88554 9999999887654   222    2455688999999999887765310                      1122


Q ss_pred             EecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217          284 MAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       284 l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                      +++...+........    ..+ ..+.|+||++++++...                ....+..||..+++....+
T Consensus       257 ~~d~~~~~~~~~~~~----~~~-~~~~~s~dg~~l~v~~~----------------~~~~v~~~d~~~~~~~~~~  310 (353)
T 3vgz_A          257 VVDTRNGNILAKVAA----PES-LAVLFNPARNEAYVTHR----------------QAGKVSVIDAKSYKVVKTF  310 (353)
T ss_dssp             EEETTTCCEEEEEEC----SSC-CCEEEETTTTEEEEEET----------------TTTEEEEEETTTTEEEEEE
T ss_pred             EEECCCCcEEEEEEc----CCC-ceEEECCCCCEEEEEEC----------------CCCeEEEEECCCCeEEEEE
Confidence            222211111100000    001 24789999998887221                1235778888887776666

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.68  E-value=8e-15  Score=168.29  Aligned_cols=264  Identities=12%  Similarity=0.044  Sum_probs=180.1

Q ss_pred             EEcCCCEEEEEeCCCeEEEEeCCCCC----CC-CCCCCeEEEEECCCCCeEEEEeCCCeEEEEEC--CCCeEEEEEccCC
Q 004217           77 GRDARRGLASWVEAESLHHLRPKYCP----LS-PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC--QTGSCLKVLHGHR  149 (767)
Q Consensus        77 ~sd~g~~LaSgs~DgsIrlWd~~t~~----L~-gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl--~tg~~l~~L~gH~  149 (767)
                      ++.++..+++...+++|.+||..+++    +. ++.  +..++|+|||++|++++.|++|++||+  .+++++..+. +.
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g  221 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG  221 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence            44567788889999999999998874    33 333  899999999999999999999999999  8899888887 45


Q ss_pred             CCcEEEEEccC---CCcEEEEEe-CCCeEEEEECCCCeEEEeecC------------CCCeEEEEEcCCCCEEEEEE-C-
Q 004217          150 RTPWVVRFHPL---NPTIIASGS-LDHEVRLWNASTAECIGSRDF------------YRPIASIAFHASGELLAVAS-G-  211 (767)
Q Consensus       150 ~~V~sLafsP~---dg~lLaSgS-~DGtVrIWDl~tg~~i~~l~h------------~~~VtsVafSPdG~~LAsgS-d-  211 (767)
                      ..+..++|+|.   +++++++++ .+++|.+||..+++++..+..            ...+..+.++|++..+++.. + 
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~  301 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  301 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence            56899999981   455666655 589999999999998887642            23788999999988666555 3 


Q ss_pred             CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeEee----cCCCc-c--CC
Q 004217          212 HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLAT----SPGYW-R--YP  278 (767)
Q Consensus       212 d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~~~~l~t----~sG~~-~--~p  278 (767)
                      +.|.+||+.+.+.+.  .....+...+..+.|+|||+++++++.      +||+..++....+..    +.+.. .  .+
T Consensus       302 g~i~vvd~~~~~~l~--~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p  379 (543)
T 1nir_A          302 GKVLLVNYKDIDNLT--VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHP  379 (543)
T ss_dssp             TEEEEEECTTSSSCE--EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEET
T ss_pred             CeEEEEEecCCCcce--eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCC
Confidence            449999998765433  123346777899999999998887764      788877655444432    11100 0  01


Q ss_pred             ------------CCeEEEecCCCCCC----CceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCce
Q 004217          279 ------------PPVICMAGAHSSSH----PGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSV  342 (767)
Q Consensus       279 ------------~~~v~l~~~~Ssd~----~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~  342 (767)
                                  ...+.+++......    ..+...........+.+.|+||++++++....+.          +.....
T Consensus       380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~----------~~~~~~  449 (543)
T 1nir_A          380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNP----------DARISQ  449 (543)
T ss_dssp             TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCS----------SHHHHT
T ss_pred             CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCC----------CcccCc
Confidence                        12344444333110    1111111112234457889999999998211000          000133


Q ss_pred             eeeeccCCCCcee
Q 004217          343 RLLTYSTPSGQYE  355 (767)
Q Consensus       343 ~l~~~~~~~~q~~  355 (767)
                      .+..||..+++..
T Consensus       450 ~v~v~d~~~~~~~  462 (543)
T 1nir_A          450 SVAVFDLKNLDAK  462 (543)
T ss_dssp             CEEEEETTCTTSC
T ss_pred             eEEEEECCCCCCC
Confidence            5788998887755

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.67  E-value=7.9e-15  Score=152.16  Aligned_cols=174  Identities=13%  Similarity=0.076  Sum_probs=127.8

Q ss_pred             EEEeCCCeEEEEeCC-CCC-----CCCCCCCeEEEEECCCCCeEEEEeCC-CeEEEEECC--CCe--EEEEEccCCCCcE
Q 004217           85 ASWVEAESLHHLRPK-YCP-----LSPPPRSTIAAAFSPDGKTLASTHGD-HTVKIIDCQ--TGS--CLKVLHGHRRTPW  153 (767)
Q Consensus        85 aSgs~DgsIrlWd~~-t~~-----L~gH~~sVtsVaFSpDG~~LASgs~D-GtVrVWDl~--tg~--~l~~L~gH~~~V~  153 (767)
                      ++...++.|++|++. +++     ...|...+.+++|+|||++|++++.+ +.|++|++.  +++  .+..+..+. .+.
T Consensus         9 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~   87 (343)
T 1ri6_A            9 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLT   87 (343)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCS
T ss_pred             EeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCc
Confidence            344678999999885 221     23577789999999999999988886 999999997  554  344555444 789


Q ss_pred             EEEEccCCCcEEEEEe-CCCeEEEEECC---CCeEEEeecCCCCeEEEEEcCCCCEEEEEE--CCcEEEEEcCC-Ccccc
Q 004217          154 VVRFHPLNPTIIASGS-LDHEVRLWNAS---TAECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNM-REETS  226 (767)
Q Consensus       154 sLafsP~dg~lLaSgS-~DGtVrIWDl~---tg~~i~~l~h~~~VtsVafSPdG~~LAsgS--dd~V~VWDl~t-~~~~~  226 (767)
                      .++|+| +++++++++ .++.|.+||+.   +.+.+..+.....+.+++|+|+|++|++++  ++.|++||+.+ ++...
T Consensus        88 ~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  166 (343)
T 1ri6_A           88 HISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  166 (343)
T ss_dssp             EEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             EEEEcC-CCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceee
Confidence            999999 777665554 58999999994   444555566666789999999999888876  45599999987 43321


Q ss_pred             CC--eEEecCCCCeEEEEEccCCCeEEEEEe------eCCcC
Q 004217          227 SP--RIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLD  260 (767)
Q Consensus       227 ~~--~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~  260 (767)
                      ..  .........+..++|+|+++++++++.      +|+++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~  208 (343)
T 1ri6_A          167 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK  208 (343)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred             ecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            00  112223457889999999998877653      67775

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.67  E-value=4e-16  Score=181.23  Aligned_cols=172  Identities=9%  Similarity=-0.038  Sum_probs=130.5

Q ss_pred             EEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCC---CeEEEEECCCCCeEEEEeCC---------CeEEEEECCCC
Q 004217           76 AGRDARRGLASWVEAESLHHLRPKYCP----LSPPPR---STIAAAFSPDGKTLASTHGD---------HTVKIIDCQTG  139 (767)
Q Consensus        76 A~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~---sVtsVaFSpDG~~LASgs~D---------GtVrVWDl~tg  139 (767)
                      +++.+++.+++ +.|++|++||..+++    +..|..   .|.+++|||||++|++++.+         +.|++||+.++
T Consensus        23 ~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~  101 (723)
T 1xfd_A           23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (723)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCC
Confidence            34456666665 689999999998874    334544   49999999999999999874         78889999998


Q ss_pred             eEEEEEc---cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC-CCC------------------eEEE
Q 004217          140 SCLKVLH---GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-YRP------------------IASI  197 (767)
Q Consensus       140 ~~l~~L~---gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h-~~~------------------VtsV  197 (767)
                      +. ..+.   +|...+..++|+| +++.|++++. +.|++||+.+++....... ...                  +.++
T Consensus       102 ~~-~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~  178 (723)
T 1xfd_A          102 DP-QSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH  178 (723)
T ss_dssp             CC-EECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred             ce-EeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceE
Confidence            75 3443   4445588999999 8888988875 7999999999887765432 222                  3789


Q ss_pred             EEcCCCCEEEEEECC-----------------------------------cEEEEEcCCCccccCCeEEec------CCC
Q 004217          198 AFHASGELLAVASGH-----------------------------------KLYIWRYNMREETSSPRIVLR------TRR  236 (767)
Q Consensus       198 afSPdG~~LAsgSdd-----------------------------------~V~VWDl~t~~~~~~~~~l~~------h~~  236 (767)
                      +|+|||++|++++.+                                   .|++||+.+++...   .+..      +..
T Consensus       179 ~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~---~l~~~~~~~~~~~  255 (723)
T 1xfd_A          179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL---EMMPPDDPRMREY  255 (723)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE---ECCCCCCGGGSSE
T ss_pred             EECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeE---EeeCCccCCCccc
Confidence            999999999988732                                   48999998876322   2232      356


Q ss_pred             CeEEEEEccCCCeEEEEE
Q 004217          237 SLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       237 ~VtsVaFSPDG~~LlaSg  254 (767)
                      .+..++|+|||+++++..
T Consensus       256 ~~~~~~~SpDg~~l~~~~  273 (723)
T 1xfd_A          256 YITMVKWATSTKVAVTWL  273 (723)
T ss_dssp             EEEEEEESSSSEEEEEEE
T ss_pred             eeEEEEEeCCCeEEEEEE
Confidence            789999999999765543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.66  E-value=1.4e-14  Score=153.03  Aligned_cols=181  Identities=12%  Similarity=0.093  Sum_probs=126.6

Q ss_pred             eEEEEEEcCCCEEEEEeC---CCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCeEEEEe-CCCeEEEEECC-CCe
Q 004217           72 QIFEAGRDARRGLASWVE---AESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQ-TGS  140 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~---DgsIrlWd~~t~~------L~gH~~sVtsVaFSpDG~~LASgs-~DGtVrVWDl~-tg~  140 (767)
                      +..++++.+++ |+..+.   ++.|.+|++..++      +..+...+..++|+|||++|++++ .++.|++||+. +++
T Consensus        42 p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~  120 (347)
T 3hfq_A           42 PTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA  120 (347)
T ss_dssp             CCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC
T ss_pred             cceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC
Confidence            34466677777 665554   6899999997653      234677889999999999998888 68999999996 332


Q ss_pred             --EEEEEcc---------CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC-CCeEEEe----ecCCCCeEEEEEcCCCC
Q 004217          141 --CLKVLHG---------HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TAECIGS----RDFYRPIASIAFHASGE  204 (767)
Q Consensus       141 --~l~~L~g---------H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~-tg~~i~~----l~h~~~VtsVafSPdG~  204 (767)
                        .+..+..         +...+.+++|+| +++++++...++.|++||+. +++....    ......+..++|+|+|+
T Consensus       121 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~  199 (347)
T 3hfq_A          121 LTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQ  199 (347)
T ss_dssp             EEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred             eeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCC
Confidence              3333322         122478899999 77777777789999999998 5544322    22344678899999999


Q ss_pred             EEEEEEC--CcEEEEEcCC--CccccCCeEEecCC------CCeEEEEEccCCCeEEEEEe
Q 004217          205 LLAVASG--HKLYIWRYNM--REETSSPRIVLRTR------RSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       205 ~LAsgSd--d~V~VWDl~t--~~~~~~~~~l~~h~------~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +|++++.  +.|.+|+++.  ++... ........      ..+..++|+|||++|+++..
T Consensus       200 ~l~v~~~~~~~v~v~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~  259 (347)
T 3hfq_A          200 YAFLAGELSSQIASLKYDTQTGAFTQ-LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR  259 (347)
T ss_dssp             EEEEEETTTTEEEEEEEETTTTEEEE-EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE
T ss_pred             EEEEEeCCCCEEEEEEecCCCCceEE-eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC
Confidence            8777663  4499999875  33211 11222222      45889999999998866654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.66  E-value=2.6e-15  Score=175.12  Aligned_cols=177  Identities=10%  Similarity=0.048  Sum_probs=139.2

Q ss_pred             eEEEEEEcCCCEEEEEeC-CC-----eEEEEeCCCCC----CCCCC------------------------CCeEEEEECC
Q 004217           72 QIFEAGRDARRGLASWVE-AE-----SLHHLRPKYCP----LSPPP------------------------RSTIAAAFSP  117 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~-Dg-----sIrlWd~~t~~----L~gH~------------------------~sVtsVaFSp  117 (767)
                      ...++++.+|+.|++++. |+     .|++||+.+++    +..+.                        ..|.+++|||
T Consensus        39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp  118 (741)
T 2ecf_A           39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP  118 (741)
T ss_dssp             CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred             CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence            456778899999999988 88     89999998773    22222                        2378999999


Q ss_pred             CCCeEEEEeCCCeEEEEECCCCe--EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCC--
Q 004217          118 DGKTLASTHGDHTVKIIDCQTGS--CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRP--  193 (767)
Q Consensus       118 DG~~LASgs~DGtVrVWDl~tg~--~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~--  193 (767)
                      ||++|++++. +.|++||+.+++  .+..+..|...+..++|+| ++++|++++ ++.|++||+.+++..........  
T Consensus       119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~  195 (741)
T 2ecf_A          119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTI  195 (741)
T ss_dssp             TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSE
T ss_pred             CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEecCCCCEEEeccCCccce
Confidence            9999999887 899999999883  3556777888999999999 999999887 56999999999887765432221  


Q ss_pred             ---------------eEEEEEcCCCCEEEEEE-CC---------------------------------cEEEEEcCC-Cc
Q 004217          194 ---------------IASIAFHASGELLAVAS-GH---------------------------------KLYIWRYNM-RE  223 (767)
Q Consensus       194 ---------------VtsVafSPdG~~LAsgS-dd---------------------------------~V~VWDl~t-~~  223 (767)
                                     +..++|+|||++|++++ ++                                 .|++||+.+ ++
T Consensus       196 ~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~  275 (741)
T 2ecf_A          196 GNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ  275 (741)
T ss_dssp             EESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC
T ss_pred             eccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc
Confidence                           47799999999888876 22                                 588889887 65


Q ss_pred             cccCCeEEe--cCCCCeEEEEEccCCCeEEEEEe
Q 004217          224 ETSSPRIVL--RTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       224 ~~~~~~~l~--~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ...   ...  .|...+..++| |||++|++++.
T Consensus       276 ~~~---~~~~~~~~~~~~~~~~-pDg~~l~~~~~  305 (741)
T 2ecf_A          276 TQW---IDLGKEQDIYLARVNW-RDPQHLSFQRQ  305 (741)
T ss_dssp             CEE---ECCCSCSSEEEEEEEE-EETTEEEEEEE
T ss_pred             eEE---ecCCCCcceEEEEEEe-CCCCEEEEEEe
Confidence            432   221  46778999999 99998887654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.66  E-value=1.5e-14  Score=149.74  Aligned_cols=142  Identities=15%  Similarity=0.160  Sum_probs=114.0

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCCC---CCCC---CeEEEEECCCCCeEE-EEeCCCeEEEEECCCCeEEEEEcc-C----C
Q 004217           82 RGLASWVEAESLHHLRPKYCPLS---PPPR---STIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHG-H----R  149 (767)
Q Consensus        82 ~~LaSgs~DgsIrlWd~~t~~L~---gH~~---sVtsVaFSpDG~~LA-Sgs~DGtVrVWDl~tg~~l~~L~g-H----~  149 (767)
                      ..++++..++.|++||..++++.   ....   .+..++|+|||++|+ ++..++.|.+||+.+++.+..+.. +    .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            46888999999999999876321   1222   588999999998764 555678999999999998877653 2    2


Q ss_pred             CCcEEEEEccCCCcEEEEEe------------CCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEE
Q 004217          150 RTPWVVRFHPLNPTIIASGS------------LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIW  217 (767)
Q Consensus       150 ~~V~sLafsP~dg~lLaSgS------------~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VW  217 (767)
                      ..+..++|+| ++++++++.            .++.|.+||+.+++.+..+.....+..++|+|+|++|+++ ++.|++|
T Consensus        82 ~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~  159 (337)
T 1pby_B           82 KSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVM  159 (337)
T ss_dssp             ECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEEE
T ss_pred             ccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe-CCeEEEE
Confidence            2678899999 888887775            5799999999999988887767778899999999988887 5669999


Q ss_pred             EcCCCccc
Q 004217          218 RYNMREET  225 (767)
Q Consensus       218 Dl~t~~~~  225 (767)
                      |+.+++..
T Consensus       160 d~~~~~~~  167 (337)
T 1pby_B          160 DPEAGTLV  167 (337)
T ss_dssp             ETTTTEEE
T ss_pred             ECCCCcEe
Confidence            99887653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.65  E-value=2.4e-15  Score=167.57  Aligned_cols=151  Identities=10%  Similarity=0.013  Sum_probs=126.1

Q ss_pred             ceEEEEEEcCCCEEE----EEeCCCeEEEEeCCCC---------------CCCCCCCCeEEEEECCC-CCeEEEEeCCCe
Q 004217           71 SQIFEAGRDARRGLA----SWVEAESLHHLRPKYC---------------PLSPPPRSTIAAAFSPD-GKTLASTHGDHT  130 (767)
Q Consensus        71 s~~~vA~sd~g~~La----Sgs~DgsIrlWd~~t~---------------~L~gH~~sVtsVaFSpD-G~~LASgs~DGt  130 (767)
                      ....++++.++..|+    +++.|+.|++||+.+.               .+.+|...|.+++|+|+ +++|++++.||+
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~  173 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS  173 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence            367788888999999    7889999999997542               24579999999999997 899999999999


Q ss_pred             EEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec--------CCCCeEEEEEcCC
Q 004217          131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--------FYRPIASIAFHAS  202 (767)
Q Consensus       131 VrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~--------h~~~VtsVafSPd  202 (767)
                      |+|||++++..+....+|...|.+++|+| ++++|++|+.|++|++||++ ++....+.        |...|.+++|+++
T Consensus       174 v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~  251 (434)
T 2oit_A          174 IAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGT  251 (434)
T ss_dssp             EEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEET
T ss_pred             EEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecC
Confidence            99999999987777788999999999999 89999999999999999998 55544432        1237899999999


Q ss_pred             CCEEEEEE-CC-------cEEEEEcCCCc
Q 004217          203 GELLAVAS-GH-------KLYIWRYNMRE  223 (767)
Q Consensus       203 G~~LAsgS-dd-------~V~VWDl~t~~  223 (767)
                      +.++++.+ .+       .+++||+++.+
T Consensus       252 ~~~l~~~~~~dg~~~~~~~v~i~~l~~~~  280 (434)
T 2oit_A          252 YVFAIVYAAADGTLETSPDVVMALLPKKE  280 (434)
T ss_dssp             TEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred             ceEEEEEccCCCccCCCCceEEEEeccCC
Confidence            88876554 21       19999998654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.64  E-value=3.9e-14  Score=147.68  Aligned_cols=178  Identities=12%  Similarity=0.088  Sum_probs=131.9

Q ss_pred             EEEEEcCCCEEEEEeC-CCeEEEEeCCCCCC-----CCCCCCeEEEEECCCCCeEEEEeCCC---eEEEEECCCCeEEEE
Q 004217           74 FEAGRDARRGLASWVE-AESLHHLRPKYCPL-----SPPPRSTIAAAFSPDGKTLASTHGDH---TVKIIDCQTGSCLKV  144 (767)
Q Consensus        74 ~vA~sd~g~~LaSgs~-DgsIrlWd~~t~~L-----~gH~~sVtsVaFSpDG~~LASgs~DG---tVrVWDl~tg~~l~~  144 (767)
                      .++++.+++.++.... ++.|.+||..++++     ..+...+.+++|+|||++|+++..++   .|++||+.+++.+..
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~  123 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST  123 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE
Confidence            6777788887766655 88999999988754     24445555599999999999555553   999999999998888


Q ss_pred             EccCCCCcEEEEEccCCCc-EEEEEeCCCe-EEEEECCCCeEE-----EeecCCCCeEEEEEcCCCCEEEEEEC--CcEE
Q 004217          145 LHGHRRTPWVVRFHPLNPT-IIASGSLDHE-VRLWNASTAECI-----GSRDFYRPIASIAFHASGELLAVASG--HKLY  215 (767)
Q Consensus       145 L~gH~~~V~sLafsP~dg~-lLaSgS~DGt-VrIWDl~tg~~i-----~~l~h~~~VtsVafSPdG~~LAsgSd--d~V~  215 (767)
                      +..+ ..+..++|+| +++ ++++...++. |.+|++.....+     ..+.....+..++|+|+|++++++..  +.|+
T Consensus       124 ~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~  201 (331)
T 3u4y_A          124 IPIP-YDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIG  201 (331)
T ss_dssp             EECC-TTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EECC-CCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEE
Confidence            7644 4578999999 665 6666667688 999998864332     22345567899999999997776663  4499


Q ss_pred             EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       216 VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      +||+.+++.......+ .....+..++|+|||++++++.
T Consensus       202 v~d~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~  239 (331)
T 3u4y_A          202 ILETQNPENITLLNAV-GTNNLPGTIVVSRDGSTVYVLT  239 (331)
T ss_dssp             EEECSSTTSCEEEEEE-ECSSCCCCEEECTTSSEEEEEC
T ss_pred             EEECCCCcccceeeec-cCCCCCceEEECCCCCEEEEEE
Confidence            9999887751101122 3456788999999999877664

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.63  E-value=1.1e-13  Score=144.79  Aligned_cols=176  Identities=8%  Similarity=0.034  Sum_probs=137.0

Q ss_pred             EEEEEEcCCCEEE-EEeCCCeEEEEeCCCCCC----CCCCC---------CeEEEEECCCCCeEEEEe--CCCeEEEEEC
Q 004217           73 IFEAGRDARRGLA-SWVEAESLHHLRPKYCPL----SPPPR---------STIAAAFSPDGKTLASTH--GDHTVKIIDC  136 (767)
Q Consensus        73 ~~vA~sd~g~~La-Sgs~DgsIrlWd~~t~~L----~gH~~---------sVtsVaFSpDG~~LASgs--~DGtVrVWDl  136 (767)
                      ..++++.+++.++ +...++.|.+||..++++    ..+..         .+.+++|+|||++|++++  .++.|.+||.
T Consensus        92 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~  171 (353)
T 3vgz_A           92 FGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDG  171 (353)
T ss_dssp             CSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEET
T ss_pred             ceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcC
Confidence            3456667777554 455679999999987642    22221         278999999999887776  4789999999


Q ss_pred             CCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-----CCCCeEEEEEcCCCCEEEEEEC
Q 004217          137 QTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-----FYRPIASIAFHASGELLAVASG  211 (767)
Q Consensus       137 ~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-----h~~~VtsVafSPdG~~LAsgSd  211 (767)
                      .+++.+..+..+...+..++|+| +++.++.++.++.|.+||+.+++.+..+.     +...+..++|+|+|+++++++.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  250 (353)
T 3vgz_A          172 GNIKLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS  250 (353)
T ss_dssp             TTTEEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred             CCCceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence            99999988876667788999999 88889999999999999999999887754     3456788999999998887774


Q ss_pred             --CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          212 --HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       212 --d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                        +.|.+||+.+++...   .+....  ...++|+|||++++++.
T Consensus       251 ~~~~v~~~d~~~~~~~~---~~~~~~--~~~~~~s~dg~~l~v~~  290 (353)
T 3vgz_A          251 KAAEVLVVDTRNGNILA---KVAAPE--SLAVLFNPARNEAYVTH  290 (353)
T ss_dssp             SSSEEEEEETTTCCEEE---EEECSS--CCCEEEETTTTEEEEEE
T ss_pred             CCCEEEEEECCCCcEEE---EEEcCC--CceEEECCCCCEEEEEE
Confidence              349999998887644   222222  25799999999777765

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.63  E-value=2.5e-14  Score=166.82  Aligned_cols=233  Identities=10%  Similarity=0.110  Sum_probs=159.5

Q ss_pred             CCCeEEEEECCCCCeEEEEeC-CC-----eEEEEECCCCeEEEEEccCCCC------------------------cEEEE
Q 004217          107 PRSTIAAAFSPDGKTLASTHG-DH-----TVKIIDCQTGSCLKVLHGHRRT------------------------PWVVR  156 (767)
Q Consensus       107 ~~sVtsVaFSpDG~~LASgs~-DG-----tVrVWDl~tg~~l~~L~gH~~~------------------------V~sLa  156 (767)
                      ...+.+++|||||++|++++. |+     .|++||+.+++....+..+...                        |..++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            557999999999999999998 88     9999999999887777655433                        78999


Q ss_pred             EccCCCcEEEEEeCCCeEEEEECCCC---eEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEec
Q 004217          157 FHPLNPTIIASGSLDHEVRLWNASTA---ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLR  233 (767)
Q Consensus       157 fsP~dg~lLaSgS~DGtVrIWDl~tg---~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~  233 (767)
                      |+| |+++|++++. ++|++||+.++   +......+...+..++|+|||++|+.++++.|++||+.+++...   ....
T Consensus       116 ~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~---~~~~  190 (741)
T 2ecf_A          116 WSP-DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQ---LTAD  190 (741)
T ss_dssp             ECT-TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEE---CCCC
T ss_pred             ECC-CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEE---eccC
Confidence            999 8999998886 99999999988   65555567788999999999999999998889999998876533   1222


Q ss_pred             CCCC----------------eEEEEEccCCCeEEEEEeeCCcCC-CC-------c--ceeE-eecCCCccCCCCeEEEec
Q 004217          234 TRRS----------------LRAVHFHPHAAPLLLTAEVNDLDS-SE-------S--SLTL-ATSPGYWRYPPPVICMAG  286 (767)
Q Consensus       234 h~~~----------------VtsVaFSPDG~~LlaSgsvwdl~s-~~-------~--~~~l-~t~sG~~~~p~~~v~l~~  286 (767)
                      +...                +.+++|||||++|+++........ ..       .  ...+ ....|. ......+.+++
T Consensus       191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~-~~~~~~l~~~d  269 (741)
T 2ecf_A          191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGD-ANVQVKLGVIS  269 (741)
T ss_dssp             CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTS-CCCEEEEEEEC
T ss_pred             CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCC-CCCeeEEEEEE
Confidence            2221                478999999998888765321100 00       0  0000 000111 00112455666


Q ss_pred             CCC-CCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217          287 AHS-SSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS  359 (767)
Q Consensus       287 ~~S-sd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~  359 (767)
                      ... +....+..+ ......+..++| |||++|++...+.            ......+..||..+++....+.
T Consensus       270 ~~~~~~~~~~~~~-~~~~~~~~~~~~-pDg~~l~~~~~~~------------~~~~~~i~~~d~~~g~~~~~~~  329 (741)
T 2ecf_A          270 PAEQAQTQWIDLG-KEQDIYLARVNW-RDPQHLSFQRQSR------------DQKKLDLVEVTLASNQQRVLAH  329 (741)
T ss_dssp             SSTTCCCEEECCC-SCSSEEEEEEEE-EETTEEEEEEEET------------TSSEEEEEEEETTTCCEEEEEE
T ss_pred             CCCCCceEEecCC-CCcceEEEEEEe-CCCCEEEEEEecc------------cCCeEEEEEEECCCCceEEEEE
Confidence            554 433222211 012223447899 9999999743311            1245678899999888776664

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.62  E-value=3e-14  Score=165.43  Aligned_cols=177  Identities=10%  Similarity=-0.011  Sum_probs=136.3

Q ss_pred             eEEEEEEcCCCEEEEEeCC---------CeEEEEeCCCCC---CC---CCCCCeEEEEECCCCCeEEEEeCCCeEEEEEC
Q 004217           72 QIFEAGRDARRGLASWVEA---------ESLHHLRPKYCP---LS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC  136 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~D---------gsIrlWd~~t~~---L~---gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl  136 (767)
                      ...++++.+++.|++++.+         +.|.+||+.+++   +.   +|...+..++|||||++||+++. +.|++||+
T Consensus        63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~  141 (723)
T 1xfd_A           63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAH  141 (723)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESS
T ss_pred             cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEEC
Confidence            4567888999999998765         778899998874   33   44455899999999999999886 79999999


Q ss_pred             CCCeEEEEEccCCCCc------------------EEEEEccCCCcEEEEEeCCC--------------------------
Q 004217          137 QTGSCLKVLHGHRRTP------------------WVVRFHPLNPTIIASGSLDH--------------------------  172 (767)
Q Consensus       137 ~tg~~l~~L~gH~~~V------------------~sLafsP~dg~lLaSgS~DG--------------------------  172 (767)
                      .+++.......+...+                  ..++|+| |++.|++++.|+                          
T Consensus       142 ~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (723)
T 1xfd_A          142 VGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK  220 (723)
T ss_dssp             SSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred             CCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence            9988777666554444                  7899999 889888887553                          


Q ss_pred             --------eEEEEECCCCeEEEeec-C------CCCeEEEEEcCCCCEEEEEEC---C--cEEEEEcCCCccccCCeEE-
Q 004217          173 --------EVRLWNASTAECIGSRD-F------YRPIASIAFHASGELLAVASG---H--KLYIWRYNMREETSSPRIV-  231 (767)
Q Consensus       173 --------tVrIWDl~tg~~i~~l~-h------~~~VtsVafSPdG~~LAsgSd---d--~V~VWDl~t~~~~~~~~~l-  231 (767)
                              +|++||+.+++....+. +      ...+..++|+|||++|++...   +  .|++||+.+++...   .. 
T Consensus       221 ~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~---~~~  297 (723)
T 1xfd_A          221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK---KHE  297 (723)
T ss_dssp             TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE---EEE
T ss_pred             CCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE---EEE
Confidence                    79999999887644443 2      457889999999998877652   1  29999999887533   22 


Q ss_pred             ecCCCCeE----EEEEccCCCeEEEE
Q 004217          232 LRTRRSLR----AVHFHPHAAPLLLT  253 (767)
Q Consensus       232 ~~h~~~Vt----sVaFSPDG~~LlaS  253 (767)
                      ..+...+.    .++|+|||+.|+..
T Consensus       298 ~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          298 DESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             EECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             eccCCEEeccCCCceEcCCCCeEEEE
Confidence            23334443    88999999988875

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.59  E-value=6.7e-14  Score=145.81  Aligned_cols=146  Identities=14%  Similarity=0.086  Sum_probs=112.0

Q ss_pred             EEcCCCEEEEEeCCCeEEEEeCCCCCC----CCC-CCCeEEEEECCCCCeEE-EEeCCCeEEEEECCCCeEEEEEccCC-
Q 004217           77 GRDARRGLASWVEAESLHHLRPKYCPL----SPP-PRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHGHR-  149 (767)
Q Consensus        77 ~sd~g~~LaSgs~DgsIrlWd~~t~~L----~gH-~~sVtsVaFSpDG~~LA-Sgs~DGtVrVWDl~tg~~l~~L~gH~-  149 (767)
                      +..++..+++.+.++.|++||..++++    ..+ ...+..++|+|||++++ +...++.|.+||+.+++.+..+..+. 
T Consensus         7 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~   86 (349)
T 1jmx_B            7 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV   86 (349)
T ss_dssp             CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred             ccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc
Confidence            345777888999999999999988742    222 22588999999998665 55568999999999999887776332 


Q ss_pred             -----CCcEEEEEccCCCcEEEEEeCC------------CeEEEEECCCCeE---EEeecCCCCeEEEEEcCCCCEEEEE
Q 004217          150 -----RTPWVVRFHPLNPTIIASGSLD------------HEVRLWNASTAEC---IGSRDFYRPIASIAFHASGELLAVA  209 (767)
Q Consensus       150 -----~~V~sLafsP~dg~lLaSgS~D------------GtVrIWDl~tg~~---i~~l~h~~~VtsVafSPdG~~LAsg  209 (767)
                           ..+..++|+| +++++++++.+            +.|.+||+.+++.   +..+.+...+.+++|+|+|+ ++++
T Consensus        87 ~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~  164 (349)
T 1jmx_B           87 PGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVA  164 (349)
T ss_dssp             TTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEE
T ss_pred             cccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEc
Confidence                 2378899999 88888888765            8999999988543   34445556788999999999 5554


Q ss_pred             ECCcEEEEEcCCCccc
Q 004217          210 SGHKLYIWRYNMREET  225 (767)
Q Consensus       210 Sdd~V~VWDl~t~~~~  225 (767)
                       ++.|++||+.+++..
T Consensus       165 -~~~i~~~d~~~~~~~  179 (349)
T 1jmx_B          165 -GPDIYKMDVKTGKYT  179 (349)
T ss_dssp             -SSSEEEECTTTCCEE
T ss_pred             -cCcEEEEeCCCCcee
Confidence             344999999887653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.59  E-value=9.5e-14  Score=161.22  Aligned_cols=244  Identities=13%  Similarity=0.114  Sum_probs=163.9

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCC-----CC---C-CCCCCC--------------eEEEEECCCCCeEEEEe-----
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKY-----CP---L-SPPPRS--------------TIAAAFSPDGKTLASTH-----  126 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t-----~~---L-~gH~~s--------------VtsVaFSpDG~~LASgs-----  126 (767)
                      .+++.+++.|+.. .++.|++|++.+     ++   + ..+...              +.+++|||||++|++++     
T Consensus       126 ~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~  204 (706)
T 2z3z_A          126 LDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSM  204 (706)
T ss_dssp             CEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTT
T ss_pred             CcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCC
Confidence            5677888888885 689999999987     53   1 223332              48999999999999987     


Q ss_pred             ----------------------------CCCeEEEEECCCCeEEEEEc--cCCCCcEEEEEccCCCcEEEEEeCCC----
Q 004217          127 ----------------------------GDHTVKIIDCQTGSCLKVLH--GHRRTPWVVRFHPLNPTIIASGSLDH----  172 (767)
Q Consensus       127 ----------------------------~DGtVrVWDl~tg~~l~~L~--gH~~~V~sLafsP~dg~lLaSgS~DG----  172 (767)
                                                  .+..|++||+.+++......  .|...+..++|+| +++.|++++.|+    
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~  283 (706)
T 2z3z_A          205 VKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNE  283 (706)
T ss_dssp             SCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCE
T ss_pred             CceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCe
Confidence                                        44789999999988655442  4667789999999 899888887775    


Q ss_pred             -eEEEEECCCC-eEEEeec--CCC---CeEEEEEcC--CCCEEEEEECCc-EEEEEcC-CCccccCCeEEecCCCCeEE-
Q 004217          173 -EVRLWNASTA-ECIGSRD--FYR---PIASIAFHA--SGELLAVASGHK-LYIWRYN-MREETSSPRIVLRTRRSLRA-  240 (767)
Q Consensus       173 -tVrIWDl~tg-~~i~~l~--h~~---~VtsVafSP--dG~~LAsgSdd~-V~VWDl~-t~~~~~~~~~l~~h~~~Vts-  240 (767)
                       .|++||+.++ +......  ...   .+..++|+|  +|++|++++.++ ++||+++ +++...   .+..+...+.. 
T Consensus       284 ~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~---~l~~~~~~v~~~  360 (706)
T 2z3z_A          284 CKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIR---QVTKGEWEVTNF  360 (706)
T ss_dssp             EEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEE---ECCCSSSCEEEE
T ss_pred             eEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEE---ecCCCCeEEEee
Confidence             9999999998 4333321  222   246789999  999988887555 8888776 333322   45567777876 


Q ss_pred             EEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEE
Q 004217          241 VHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (767)
Q Consensus       241 VaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva  320 (767)
                      ++|+|||+.|++++....-                  ....+..++...+....+.     ....+..++|+|||++++.
T Consensus       361 ~~~spdg~~l~~~~~~~~~------------------~~~~l~~~d~~~~~~~~l~-----~~~~~~~~~~spdg~~l~~  417 (706)
T 2z3z_A          361 AGFDPKGTRLYFESTEASP------------------LERHFYCIDIKGGKTKDLT-----PESGMHRTQLSPDGSAIID  417 (706)
T ss_dssp             EEECTTSSEEEEEESSSCT------------------TCBEEEEEETTCCCCEESC-----CSSSEEEEEECTTSSEEEE
T ss_pred             eEEcCCCCEEEEEecCCCC------------------ceEEEEEEEcCCCCceecc-----CCCceEEEEECCCCCEEEE
Confidence            8999999988877642110                  0012333332222211111     1123457899999999987


Q ss_pred             eecCCCCCCcccccccccCCceeeeeccCCCCceeeeecc
Q 004217          321 QHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSP  360 (767)
Q Consensus       321 ~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~p  360 (767)
                      .....             .....+..||..+++ ...+..
T Consensus       418 ~~~~~-------------~~p~~i~l~d~~~~~-~~~~~~  443 (706)
T 2z3z_A          418 IFQSP-------------TVPRKVTVTNIGKGS-HTLLEA  443 (706)
T ss_dssp             EEECS-------------SCSCEEEEEESSSCE-EEEEEC
T ss_pred             EecCC-------------CCCcEEEEEECCCCe-Eeeccc
Confidence            32211             123457788888776 344433

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.58  E-value=1.3e-14  Score=169.10  Aligned_cols=171  Identities=12%  Similarity=0.074  Sum_probs=125.0

Q ss_pred             EEEcCCCEEEEEeCCCeEEEEeCCCCC---CCC-CCC---CeEEEEECCCCCeEEEEeC---------CCeEEEEECCCC
Q 004217           76 AGRDARRGLASWVEAESLHHLRPKYCP---LSP-PPR---STIAAAFSPDGKTLASTHG---------DHTVKIIDCQTG  139 (767)
Q Consensus        76 A~sd~g~~LaSgs~DgsIrlWd~~t~~---L~g-H~~---sVtsVaFSpDG~~LASgs~---------DGtVrVWDl~tg  139 (767)
                      .++.++..++ .+.|+.|++||..+++   +.. |..   .+.+++|||||++|++++.         |+.|++||++++
T Consensus        22 ~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g  100 (719)
T 1z68_A           22 NWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG  100 (719)
T ss_dssp             EESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred             EECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC
Confidence            3445554444 4569999999998874   222 322   4899999999999999876         789999999998


Q ss_pred             eEE--EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec--CCCCe-----------------EEEE
Q 004217          140 SCL--KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--FYRPI-----------------ASIA  198 (767)
Q Consensus       140 ~~l--~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~--h~~~V-----------------tsVa  198 (767)
                      +.+  ..+   ...+..++|+| |++.|+++. |++|++||+.+++......  +...|                 .+++
T Consensus       101 ~~~~~~~l---~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~  175 (719)
T 1z68_A          101 EFVRGNEL---PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW  175 (719)
T ss_dssp             EECCSSCC---CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred             ccccceec---CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence            862  222   35688999999 888888875 7899999999888765432  22222                 4899


Q ss_pred             EcCCCCEEEEEECC-----------------------------------cEEEEEcCCCccc---c--CCeEEecCCCCe
Q 004217          199 FHASGELLAVASGH-----------------------------------KLYIWRYNMREET---S--SPRIVLRTRRSL  238 (767)
Q Consensus       199 fSPdG~~LAsgSdd-----------------------------------~V~VWDl~t~~~~---~--~~~~l~~h~~~V  238 (767)
                      |+|||++|++++.+                                   .|++||+.+++..   .  .+..+..|...+
T Consensus       176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  255 (719)
T 1z68_A          176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYF  255 (719)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEE
T ss_pred             ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceE
Confidence            99999999988732                                   5889999887642   1  001233577889


Q ss_pred             EEEEEccCCCeEEE
Q 004217          239 RAVHFHPHAAPLLL  252 (767)
Q Consensus       239 tsVaFSPDG~~Lla  252 (767)
                      .+++|+||++.+++
T Consensus       256 ~~~~~SpD~~~~~~  269 (719)
T 1z68_A          256 SWLTWVTDERVCLQ  269 (719)
T ss_dssp             EEEEESSSSEEEEE
T ss_pred             EEeEEeCCCeEEEE
Confidence            99999999764443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.57  E-value=4.5e-13  Score=138.88  Aligned_cols=180  Identities=12%  Similarity=0.079  Sum_probs=128.6

Q ss_pred             eEEEEEEcCCCEEEEEeCC-CeEEEEeCC--CCCCC-----CCCCCeEEEEECCCCCeEEEEeC-CCeEEEEECC---CC
Q 004217           72 QIFEAGRDARRGLASWVEA-ESLHHLRPK--YCPLS-----PPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQ---TG  139 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~D-gsIrlWd~~--t~~L~-----gH~~sVtsVaFSpDG~~LASgs~-DGtVrVWDl~---tg  139 (767)
                      ...++++.+++.|++++.+ +.|++|++.  ++++.     .....+..++|+|+|++|++++. ++.|++||+.   ++
T Consensus        40 ~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~  119 (343)
T 1ri6_A           40 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV  119 (343)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE
T ss_pred             CceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc
Confidence            4457777888988888876 999999987  44211     12237899999999998877665 8899999994   34


Q ss_pred             eEEEEEccCCCCcEEEEEccCCCcEEEEEe-CCCeEEEEECCC-CeEEE------eecCCCCeEEEEEcCCCCEEEEEE-
Q 004217          140 SCLKVLHGHRRTPWVVRFHPLNPTIIASGS-LDHEVRLWNAST-AECIG------SRDFYRPIASIAFHASGELLAVAS-  210 (767)
Q Consensus       140 ~~l~~L~gH~~~V~sLafsP~dg~lLaSgS-~DGtVrIWDl~t-g~~i~------~l~h~~~VtsVafSPdG~~LAsgS-  210 (767)
                      +.+..+..+ ..+.+++|+| +++++++++ .|+.|++||+.+ ++...      .......+..++|+|+|++|++++ 
T Consensus       120 ~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~  197 (343)
T 1ri6_A          120 GVVDVVEGL-DGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE  197 (343)
T ss_dssp             EEEEEECCC-TTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET
T ss_pred             cccccccCC-CCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC
Confidence            455555544 4588999999 777777666 899999999987 65432      122455788999999999877666 


Q ss_pred             C-CcEEEEEcCC--CccccCCeEEe----c--CCCCeEEEEEccCCCeEEEEE
Q 004217          211 G-HKLYIWRYNM--REETSSPRIVL----R--TRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       211 d-d~V~VWDl~t--~~~~~~~~~l~----~--h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      . +.|.+||++.  ++... .....    .  ....+..++|+|||++|+++.
T Consensus       198 ~~~~i~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~  249 (343)
T 1ri6_A          198 LNSSVDVWELKDPHGNIEC-VQTLDMMPENFSDTRWAADIHITPDGRHLYACD  249 (343)
T ss_dssp             TTTEEEEEESSCTTSCCEE-EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE
T ss_pred             CCCEEEEEEecCCCCcEEE-EeeccccCccccccCCccceEECCCCCEEEEEe
Confidence            3 4499999964  32211 11111    1  134577899999999887665

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.57  E-value=6.8e-14  Score=162.47  Aligned_cols=176  Identities=13%  Similarity=0.130  Sum_probs=131.3

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC-----CeEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-----GSCLK  143 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t-----g~~l~  143 (767)
                      ...++++.+ +.++.. .++.|++||+.+++   +..+...+.+++|||||++|+++ .|+.|++||+.+     ++...
T Consensus        84 v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~  160 (706)
T 2z3z_A           84 SFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIA  160 (706)
T ss_dssp             CEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEE
T ss_pred             ceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEE
Confidence            556777777 555544 35999999998773   45677789999999999999985 679999999998     87665


Q ss_pred             EEccCCCC--------------cEEEEEccCCCcEEEEEe---------------------------------CCCeEEE
Q 004217          144 VLHGHRRT--------------PWVVRFHPLNPTIIASGS---------------------------------LDHEVRL  176 (767)
Q Consensus       144 ~L~gH~~~--------------V~sLafsP~dg~lLaSgS---------------------------------~DGtVrI  176 (767)
                      ....+...              +.++.|+| |+++|++++                                 .+..|++
T Consensus       161 ~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~  239 (706)
T 2z3z_A          161 VTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI  239 (706)
T ss_dssp             SCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred             eccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence            44444332              47899999 899999887                                 4578999


Q ss_pred             EECCCCeEEEee---cCCCCeEEEEEcCCCCEEEEEE-CC-----cEEEEEcCCCccccCCeEE-ecCCC---CeEEEEE
Q 004217          177 WNASTAECIGSR---DFYRPIASIAFHASGELLAVAS-GH-----KLYIWRYNMREETSSPRIV-LRTRR---SLRAVHF  243 (767)
Q Consensus       177 WDl~tg~~i~~l---~h~~~VtsVafSPdG~~LAsgS-dd-----~V~VWDl~t~~~~~~~~~l-~~h~~---~VtsVaF  243 (767)
                      ||+.+++.....   .+...+..++|+|||++|++++ +.     .|++||+.+++...  ... ..+..   .+..++|
T Consensus       240 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~--~~~~~~~~~~~~~~~~~~~  317 (706)
T 2z3z_A          240 YHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVR--TLFVETDKHYVEPLHPLTF  317 (706)
T ss_dssp             EETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEE--EEEEEECSSCCCCCSCCEE
T ss_pred             EECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceee--EEEEccCCCeECccCCcee
Confidence            999998876554   3556789999999999888876 32     49999999884322  111 12222   3467899


Q ss_pred             cc--CCCeEEEE
Q 004217          244 HP--HAAPLLLT  253 (767)
Q Consensus       244 SP--DG~~LlaS  253 (767)
                      +|  ||++++++
T Consensus       318 sp~~dg~~l~~~  329 (706)
T 2z3z_A          318 LPGSNNQFIWQS  329 (706)
T ss_dssp             CTTCSSEEEEEE
T ss_pred             ecCCCCEEEEEE
Confidence            99  99855444

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.55  E-value=4.9e-13  Score=138.26  Aligned_cols=173  Identities=17%  Similarity=0.116  Sum_probs=125.9

Q ss_pred             EEEEEEcCCCEE-EEEeCCCeEEEEeCCCCCCC-----CC----CCCeEEEEECCCCCeEEEEe------------CCCe
Q 004217           73 IFEAGRDARRGL-ASWVEAESLHHLRPKYCPLS-----PP----PRSTIAAAFSPDGKTLASTH------------GDHT  130 (767)
Q Consensus        73 ~~vA~sd~g~~L-aSgs~DgsIrlWd~~t~~L~-----gH----~~sVtsVaFSpDG~~LASgs------------~DGt  130 (767)
                      ..++++.+++.+ ++...++.|.+||..+++..     ++    ...+.+++|+|||++|+++.            .++.
T Consensus        37 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~  116 (337)
T 1pby_B           37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR  116 (337)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred             cceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCce
Confidence            345666777665 45566789999999876421     11    22677899999999998886            5799


Q ss_pred             EEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCC-------------------
Q 004217          131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-------------------  191 (767)
Q Consensus       131 VrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~-------------------  191 (767)
                      |.+||+.+++.+..+.. ...+..++|+| ++++++++  ++.|.+||+.+++.+..+...                   
T Consensus       117 i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  192 (337)
T 1pby_B          117 VALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH  192 (337)
T ss_dssp             EEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCC
T ss_pred             EEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeec
Confidence            99999999998877764 45678899999 77777766  688999999988876544311                   


Q ss_pred             ------------------------------------------------CCeEEEEEcCCCCEEEEEECCcEEEEEcCCCc
Q 004217          192 ------------------------------------------------RPIASIAFHASGELLAVASGHKLYIWRYNMRE  223 (767)
Q Consensus       192 ------------------------------------------------~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~  223 (767)
                                                                      ..+.+++|+|+|++|+++ ++.|++||+.+++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~  271 (337)
T 1pby_B          193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNA  271 (337)
T ss_dssp             TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTE
T ss_pred             cCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCc
Confidence                                                            123457888888888777 5668888887766


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       224 ~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      ...   .+ .....+.+++|+|||+++++++
T Consensus       272 ~~~---~~-~~~~~~~~~~~s~dg~~l~~~~  298 (337)
T 1pby_B          272 SIK---RV-PLPHSYYSVNVSTDGSTVWLGG  298 (337)
T ss_dssp             EEE---EE-ECSSCCCEEEECTTSCEEEEES
T ss_pred             Ccc---ee-cCCCceeeEEECCCCCEEEEEc
Confidence            533   22 2335677888888888776654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.54  E-value=1.8e-13  Score=167.72  Aligned_cols=224  Identities=12%  Similarity=0.054  Sum_probs=164.4

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCCCC---CC-----------CCCCeEEEEEC-CCCCeEEEEeCCCeEEEEECCCC
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYCPL---SP-----------PPRSTIAAAFS-PDGKTLASTHGDHTVKIIDCQTG  139 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~~L---~g-----------H~~sVtsVaFS-pDG~~LASgs~DGtVrVWDl~tg  139 (767)
                      .+++.+++.|+.. .++.|.+|+....++   .+           |...+.+++|| |||++|++++ ++.|++|++.++
T Consensus       250 ~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~  327 (1045)
T 1k32_A          250 RHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT  327 (1045)
T ss_dssp             EEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS
T ss_pred             eeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC
Confidence            4666778877776 488999999855433   22           33468999999 9999999988 789999999887


Q ss_pred             eEEEEEccCCC-CcEEEEEccCCCcEEEEEeCCCeEE-EEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEE
Q 004217          140 SCLKVLHGHRR-TPWVVRFHPLNPTIIASGSLDHEVR-LWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYI  216 (767)
Q Consensus       140 ~~l~~L~gH~~-~V~sLafsP~dg~lLaSgS~DGtVr-IWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~V  216 (767)
                      +.. .+..|.. .+..++|+  +++.|++++.+..+. +||+.+++......+...+..++|+|||++|++++.++ |++
T Consensus       328 ~~~-~~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~  404 (1045)
T 1k32_A          328 YVL-KVPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMT  404 (1045)
T ss_dssp             BEE-ECSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ceE-EccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEE
Confidence            744 4677777 89999999  678888888888899 99999887665556778899999999999999998765 999


Q ss_pred             EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCcee
Q 004217          217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLA  296 (767)
Q Consensus       217 WDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~  296 (767)
                      ||+.+++...   ....|...+.+++|||||++|++++...+...             .......+.+|+...+....+ 
T Consensus       405 ~d~~tg~~~~---~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~-------------~~~~~~~i~l~d~~~g~~~~l-  467 (1045)
T 1k32_A          405 VDLETGKPTV---IERSREAMITDFTISDNSRFIAYGFPLKHGET-------------DGYVMQAIHVYDMEGRKIFAA-  467 (1045)
T ss_dssp             EETTTCCEEE---EEECSSSCCCCEEECTTSCEEEEEEEECSSTT-------------CSCCEEEEEEEETTTTEEEEC-
T ss_pred             EECCCCceEE---eccCCCCCccceEECCCCCeEEEEecCccccc-------------cCCCCCeEEEEECCCCcEEEe-
Confidence            9999887544   44578889999999999998877765321110             000113466666444321111 


Q ss_pred             eccCCCCCCceeeEEecCCCEEEEeec
Q 004217          297 EEVPLITPPFLRPSFVRDDERISLQHT  323 (767)
Q Consensus       297 sg~~~~slpil~psFSpDg~rIva~~~  323 (767)
                      .   ........+.|+|||++|+....
T Consensus       468 ~---~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          468 T---TENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             S---CSSSBEEEEEECTTSCEEEEEES
T ss_pred             e---CCCcccCCceEcCCCCEEEEEec
Confidence            1   11223446899999999987443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.53  E-value=4.1e-13  Score=158.43  Aligned_cols=173  Identities=13%  Similarity=0.053  Sum_probs=127.1

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCC-----CeEEEEECCCCCeEEEEeCC---------CeEEEEEC
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPR-----STIAAAFSPDGKTLASTHGD---------HTVKIIDC  136 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~-----sVtsVaFSpDG~~LASgs~D---------GtVrVWDl  136 (767)
                      +.+..++..+++.  |+.|++||+.+++    +.+|..     ....++|||||++|+.++.+         +.+.+||+
T Consensus        22 ~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~   99 (740)
T 4a5s_A           22 LRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (740)
T ss_dssp             EEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             cEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence            4566777888876  8999999998873    344443     23458999999999999886         55679999


Q ss_pred             CCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec--CCCCe-----------------EEE
Q 004217          137 QTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--FYRPI-----------------ASI  197 (767)
Q Consensus       137 ~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~--h~~~V-----------------tsV  197 (767)
                      .+++.. .+..|...+..++|+| |++.|+.+ .|+.|++||+.+++..+...  +...+                 ..+
T Consensus       100 ~~~~~~-~l~~~~~~~~~~~~SP-dG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~  176 (740)
T 4a5s_A          100 NKRQLI-TEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL  176 (740)
T ss_dssp             TTTEEC-CSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred             CCCcEE-EcccCCCcceeeEECC-CCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcce
Confidence            999854 5677888899999999 88888887 47899999999887665422  22222                 348


Q ss_pred             EEcCCCCEEEEEEC-C------------------------------------cEEEEEcCC---CccccCCeEEe-----
Q 004217          198 AFHASGELLAVASG-H------------------------------------KLYIWRYNM---REETSSPRIVL-----  232 (767)
Q Consensus       198 afSPdG~~LAsgSd-d------------------------------------~V~VWDl~t---~~~~~~~~~l~-----  232 (767)
                      .|||||++||..+. +                                    .|++||+.+   ++... ...+.     
T Consensus       177 ~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~-~~~l~~~~~~  255 (740)
T 4a5s_A          177 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT-SIQITAPASM  255 (740)
T ss_dssp             EECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC-EEEECCCHHH
T ss_pred             EECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce-EEEecCCccC
Confidence            99999999998751 1                                    277888887   63111 11222     


Q ss_pred             -cCCCCeEEEEEccCCCeEEEE
Q 004217          233 -RTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       233 -~h~~~VtsVaFSPDG~~LlaS  253 (767)
                       +|...+..++|+|||+.++..
T Consensus       256 ~~~~~~~~~~~wspdg~~~~~~  277 (740)
T 4a5s_A          256 LIGDHYLCDVTWATQERISLQW  277 (740)
T ss_dssp             HTSCEEEEEEEEEETTEEEEEE
T ss_pred             CCCCeEEEEEEEeCCCeEEEEE
Confidence             377789999999999965544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.53  E-value=2.3e-12  Score=137.23  Aligned_cols=174  Identities=10%  Similarity=-0.034  Sum_probs=130.4

Q ss_pred             EEEcCCCEEEEEeC-CC--eEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217           76 AGRDARRGLASWVE-AE--SLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (767)
Q Consensus        76 A~sd~g~~LaSgs~-Dg--sIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH  148 (767)
                      +++.+++.|+..+. ++  .|.+||+.+++    ..++...+..+.|+|||++|+.++.++.|++||+.+++....+..+
T Consensus        42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~  121 (388)
T 3pe7_A           42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVP  121 (388)
T ss_dssp             CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred             cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeech
Confidence            45678888887776 56  38888988763    2345555557889999999999999999999999999877777766


Q ss_pred             CCCcEEEE--EccCCCcEEEEE----------------------eCCCeEEEEECCCCeEEEeecCCCCeEEEEEcC-CC
Q 004217          149 RRTPWVVR--FHPLNPTIIASG----------------------SLDHEVRLWNASTAECIGSRDFYRPIASIAFHA-SG  203 (767)
Q Consensus       149 ~~~V~sLa--fsP~dg~lLaSg----------------------S~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSP-dG  203 (767)
                      ...+....  ++| ++.+++..                      ..+..|.+||+.+++......+...+..++|+| +|
T Consensus       122 ~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg  200 (388)
T 3pe7_A          122 AEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDD  200 (388)
T ss_dssp             TTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEE
T ss_pred             hhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCC
Confidence            66554444  478 77777643                      245789999999998777777778899999999 99


Q ss_pred             CEEEEEECC-------cEEEEEcCCCccccCCeEEecCC--CCeEEEEEccCCCeEEEEE
Q 004217          204 ELLAVASGH-------KLYIWRYNMREETSSPRIVLRTR--RSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       204 ~~LAsgSdd-------~V~VWDl~t~~~~~~~~~l~~h~--~~VtsVaFSPDG~~LlaSg  254 (767)
                      +.|+....+       .|.++|+...+..    .+..+.  ..+..+.|+|||+.|+..+
T Consensus       201 ~~l~~~~~~~~~~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~~spdg~~l~~~~  256 (388)
T 3pe7_A          201 STVAFCHEGPHDLVDARMWLINEDGTNMR----KVKTHAEGESCTHEFWVPDGSALVYVS  256 (388)
T ss_dssp             EEEEEEECSCTTTSSCSEEEEETTSCCCE----ESCCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred             CEEEEEEecCCCCCcceEEEEeCCCCceE----EeeeCCCCcccccceECCCCCEEEEEe
Confidence            988877642       3888887765432    233333  3578899999999886644

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.53  E-value=1.3e-12  Score=160.03  Aligned_cols=176  Identities=10%  Similarity=-0.002  Sum_probs=149.0

Q ss_pred             eEEEEEE-cCCCEEEEEeCCCeEEEEeCCCC---CCCCCCC-CeEEEEECCCCCeEEEEeCCCeEE-EEECCCCeEEEEE
Q 004217           72 QIFEAGR-DARRGLASWVEAESLHHLRPKYC---PLSPPPR-STIAAAFSPDGKTLASTHGDHTVK-IIDCQTGSCLKVL  145 (767)
Q Consensus        72 ~~~vA~s-d~g~~LaSgs~DgsIrlWd~~t~---~L~gH~~-sVtsVaFSpDG~~LASgs~DGtVr-VWDl~tg~~l~~L  145 (767)
                      ...++++ .+++.|+..+ ++.|.+|+...+   .+..|.. .+..++|+ ||+.|++++.+..+. +||+.+++.. .+
T Consensus       298 v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l  374 (1045)
T 1k32_A          298 KFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KF  374 (1045)
T ss_dssp             GGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-EC
T ss_pred             cceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Ee
Confidence            3456677 8888888877 789999998876   3667777 89999999 999999999988899 9999887654 44


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEEC-C----------c
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG-H----------K  213 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSd-d----------~  213 (767)
                      .+|...+..++|+| ++++|++++.++.|++||+.+++..... .+...+..++|+|||++|++++. +          .
T Consensus       375 ~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~  453 (1045)
T 1k32_A          375 EENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA  453 (1045)
T ss_dssp             CCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred             cCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCe
Confidence            58888999999999 9999999999999999999999888776 68888999999999999888763 2          4


Q ss_pred             EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       214 V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      |++||+.+++.    ..+..|...+..++|+|||++|++.+.
T Consensus       454 i~l~d~~~g~~----~~l~~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          454 IHVYDMEGRKI----FAATTENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             EEEEETTTTEE----EECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             EEEEECCCCcE----EEeeCCCcccCCceEcCCCCEEEEEec
Confidence            99999988762    246678888999999999998887765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.52  E-value=1.1e-12  Score=138.50  Aligned_cols=148  Identities=12%  Similarity=0.162  Sum_probs=104.4

Q ss_pred             CCCCCeEEEEECCCCCeEEEEeC---CCeEEEEECCCCe--EEEEEccCCCCcEEEEEccCCCcEEEEEe-CCCeEEEEE
Q 004217          105 PPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGS--CLKVLHGHRRTPWVVRFHPLNPTIIASGS-LDHEVRLWN  178 (767)
Q Consensus       105 gH~~sVtsVaFSpDG~~LASgs~---DGtVrVWDl~tg~--~l~~L~gH~~~V~sLafsP~dg~lLaSgS-~DGtVrIWD  178 (767)
                      .+...+..++|+|||+ |++++.   ++.|++||+.+++  .+..+..+...+..++|+| ++++|++++ .+++|.+||
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEE
Confidence            4556788899999999 555544   6899999998776  4455556778899999999 888777777 789999999


Q ss_pred             CC-CCe--EEEeecCC----------CCeEEEEEcCCCCEEEEEEC-CcEEEEEcC-CCccccCCeEEe-cCCCCeEEEE
Q 004217          179 AS-TAE--CIGSRDFY----------RPIASIAFHASGELLAVASG-HKLYIWRYN-MREETSSPRIVL-RTRRSLRAVH  242 (767)
Q Consensus       179 l~-tg~--~i~~l~h~----------~~VtsVafSPdG~~LAsgSd-d~V~VWDl~-t~~~~~~~~~l~-~h~~~VtsVa  242 (767)
                      +. ++.  .+..+.+.          ..+.+++|+|+|+++++... +.|++||+. +++... ..... .....+..++
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~g~~p~~~~  193 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSE-QSVLTMEAGFGPRHLV  193 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEE-EEEEECCTTCCEEEEE
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEE-eeeEEcCCCCCCceEE
Confidence            96 333  23333221          24889999999995444443 449999998 343221 11112 2344678999


Q ss_pred             EccCCCeEEEEEe
Q 004217          243 FHPHAAPLLLTAE  255 (767)
Q Consensus       243 FSPDG~~LlaSgs  255 (767)
                      |+|||++++++..
T Consensus       194 ~spdg~~l~v~~~  206 (347)
T 3hfq_A          194 FSPDGQYAFLAGE  206 (347)
T ss_dssp             ECTTSSEEEEEET
T ss_pred             ECCCCCEEEEEeC
Confidence            9999998777653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.51  E-value=4.6e-12  Score=134.59  Aligned_cols=180  Identities=11%  Similarity=0.111  Sum_probs=124.2

Q ss_pred             eEEEEEEcCCCEEEEEeCC----CeEEEEeCCC--CC------CCCCCCCeEEEEECCCCCeEEEEe-CCCeEEEEECCC
Q 004217           72 QIFEAGRDARRGLASWVEA----ESLHHLRPKY--CP------LSPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQT  138 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~D----gsIrlWd~~t--~~------L~gH~~sVtsVaFSpDG~~LASgs-~DGtVrVWDl~t  138 (767)
                      +..++++.+++.|++.+.+    +.|.+|++..  ++      ...+......+++  |+++|++++ .++.|.+|++..
T Consensus        52 p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~  129 (361)
T 3scy_A           52 PSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQ  129 (361)
T ss_dssp             CCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCT
T ss_pred             CceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCC
Confidence            4446778889999988876    7999998764  32      2235567788888  888887776 588999999975


Q ss_pred             CeEEEE------Ecc--------CCCCcEEEEEccCCCcEE-EEEeCCCeEEEEECCCCe-------E-------EEeec
Q 004217          139 GSCLKV------LHG--------HRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAE-------C-------IGSRD  189 (767)
Q Consensus       139 g~~l~~------L~g--------H~~~V~sLafsP~dg~lL-aSgS~DGtVrIWDl~tg~-------~-------i~~l~  189 (767)
                      ...+..      ..+        +...+.+++|+| +++++ ++...++.|++|++....       .       .....
T Consensus       130 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~  208 (361)
T 3scy_A          130 DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA  208 (361)
T ss_dssp             TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC
T ss_pred             CCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecC
Confidence            432211      111        122357899999 77755 555568999999887543       1       22234


Q ss_pred             CCCCeEEEEEcCCCCEEEEEE--CCcEEEEEcCCCccccCCeEE---ecCCCCeEEEEEccCCCeEEEEEe
Q 004217          190 FYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSSPRIV---LRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       190 h~~~VtsVafSPdG~~LAsgS--dd~V~VWDl~t~~~~~~~~~l---~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ....+..++|+|+|+++++++  ++.|.+||+.+++... ....   ..+......++|+|||++|+++..
T Consensus       209 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~-~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~  278 (361)
T 3scy_A          209 PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE-IQTVAADTVNAQGSGDIHLSPDGKYLYASNR  278 (361)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE-EEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred             CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE-eEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence            566788999999999888887  3459999998664321 1111   223455789999999998876653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.50  E-value=1.9e-13  Score=159.21  Aligned_cols=180  Identities=9%  Similarity=0.058  Sum_probs=133.5

Q ss_pred             eEEEEEEcCCCEEEEEeC---------CCeEEEEeCCCCCC---CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCC
Q 004217           72 QIFEAGRDARRGLASWVE---------AESLHHLRPKYCPL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG  139 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~---------DgsIrlWd~~t~~L---~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg  139 (767)
                      ....+++.+|+.|+.++.         ++.|++||+.+++.   ......+..++|||||++|+++. |+.|++||+.++
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g  140 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGD  140 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCC
Confidence            445778889999988876         78999999988865   44456799999999999999986 789999999988


Q ss_pred             eEEEEE-ccCCCCc-----------------EEEEEccCCCcEEEEEeCCC-----------------------------
Q 004217          140 SCLKVL-HGHRRTP-----------------WVVRFHPLNPTIIASGSLDH-----------------------------  172 (767)
Q Consensus       140 ~~l~~L-~gH~~~V-----------------~sLafsP~dg~lLaSgS~DG-----------------------------  172 (767)
                      +..... .++...|                 ..++|+| |++.|++++.|.                             
T Consensus       141 ~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~  219 (719)
T 1z68_A          141 PPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGA  219 (719)
T ss_dssp             CCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTS
T ss_pred             CcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCC
Confidence            765432 2333222                 4899999 999999887652                             


Q ss_pred             -----eEEEEECCCCeEE---Ee------ecCCCCeEEEEEcCCCCEEEEEEC--C---cEEEEE----cCCCccccCCe
Q 004217          173 -----EVRLWNASTAECI---GS------RDFYRPIASIAFHASGELLAVASG--H---KLYIWR----YNMREETSSPR  229 (767)
Q Consensus       173 -----tVrIWDl~tg~~i---~~------l~h~~~VtsVafSPdG~~LAsgSd--d---~V~VWD----l~t~~~~~~~~  229 (767)
                           +|++||+.+++..   ..      ..+...+..++|+||++++++..+  +   .|++||    +.+++......
T Consensus       220 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~  299 (719)
T 1z68_A          220 KNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE  299 (719)
T ss_dssp             CCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE
T ss_pred             CCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe
Confidence                 7899999987752   21      136677899999999887777542  2   289999    77665433110


Q ss_pred             -EEecCCCCeE-----EEEEccCCCeEEEE
Q 004217          230 -IVLRTRRSLR-----AVHFHPHAAPLLLT  253 (767)
Q Consensus       230 -~l~~h~~~Vt-----sVaFSPDG~~LlaS  253 (767)
                       ....|...+.     .+.|+|||+.++..
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  329 (719)
T 1z68_A          300 HIEESRTGWAGGFFVSTPVFSYDAISYYKI  329 (719)
T ss_dssp             EEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred             cccccCCceEccccCCccEECCCCCeEEEE
Confidence             0145666676     89999999977664

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.48  E-value=5.2e-13  Score=152.06  Aligned_cols=172  Identities=10%  Similarity=0.037  Sum_probs=124.1

Q ss_pred             eEEEEEEcCCCEEEEEeC-CCeEEEEeCCCC---CCCCCC-CCeEEEEECCCCCeEEEEeC---CCeEEEEECCC---Ce
Q 004217           72 QIFEAGRDARRGLASWVE-AESLHHLRPKYC---PLSPPP-RSTIAAAFSPDGKTLASTHG---DHTVKIIDCQT---GS  140 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~-DgsIrlWd~~t~---~L~gH~-~sVtsVaFSpDG~~LASgs~---DGtVrVWDl~t---g~  140 (767)
                      ...++++.+|+.|+..+. |+++++|++..+   ++..|. ..+..++|||| +++++++.   +...+||.+..   +.
T Consensus        24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~  102 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGE  102 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTC
T ss_pred             hheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCc
Confidence            445667789999998876 999999998765   355666 58999999999 77777765   45556654432   33


Q ss_pred             EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC----c-EE
Q 004217          141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----K-LY  215 (767)
Q Consensus       141 ~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd----~-V~  215 (767)
                      .. .+... ..+...+|+|++...+++...++.+.+||+.+++......+..  .+++|+|||++|++++.+    . |+
T Consensus       103 ~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~  178 (582)
T 3o4h_A          103 EQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLF  178 (582)
T ss_dssp             CE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEE
T ss_pred             cc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEE
Confidence            23 44332 2345678888333444444444555599999998776665444  789999999999977643    3 99


Q ss_pred             EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       216 VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla  252 (767)
                      +||+.+++..    .+..|...+..++|||||++|++
T Consensus       179 ~~d~~~g~~~----~l~~~~~~~~~~~~SpDG~~l~~  211 (582)
T 3o4h_A          179 TSNLSSGGLR----VFDSGEGSFSSASISPGMKVTAG  211 (582)
T ss_dssp             EEETTTCCCE----EECCSSCEEEEEEECTTSCEEEE
T ss_pred             EEcCCCCCce----EeecCCCccccceECCCCCEEEE
Confidence            9999887642    46778888999999999998873

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.48  E-value=1.1e-12  Score=136.49  Aligned_cols=182  Identities=13%  Similarity=0.096  Sum_probs=130.5

Q ss_pred             eEEEEEEcCCCEEE-EEeCCCeEEEEeCCCCCC----C-CC-----CCCeEEEEECCCCCeEEEEeCC------------
Q 004217           72 QIFEAGRDARRGLA-SWVEAESLHHLRPKYCPL----S-PP-----PRSTIAAAFSPDGKTLASTHGD------------  128 (767)
Q Consensus        72 ~~~vA~sd~g~~La-Sgs~DgsIrlWd~~t~~L----~-gH-----~~sVtsVaFSpDG~~LASgs~D------------  128 (767)
                      ...+++..+++.++ +...++.|.+||..+++.    . .+     ...+.+++|+|||++|++++.+            
T Consensus        45 ~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  124 (349)
T 1jmx_B           45 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP  124 (349)
T ss_dssp             SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCC
Confidence            44566667777554 555789999999987632    1 22     2337899999999999998865            


Q ss_pred             CeEEEEECCCCe---EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCC-------------
Q 004217          129 HTVKIIDCQTGS---CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR-------------  192 (767)
Q Consensus       129 GtVrVWDl~tg~---~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~-------------  192 (767)
                      +.|.+||+.+++   .+..+.. ...+.+++|+| +++ ++.++  +.|.+||+.+++.+..+....             
T Consensus       125 ~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (349)
T 1jmx_B          125 PRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAAD-DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY  199 (349)
T ss_dssp             CEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECT-TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred             CeEEEEECCCccccceeeeccC-CCcccceeECC-CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCcccee
Confidence            899999998844   3344443 34688999999 777 44444  349999999988776643221             


Q ss_pred             --------------------------------------------------------CeEEEEEcC-CCCEEEEEECCcEE
Q 004217          193 --------------------------------------------------------PIASIAFHA-SGELLAVASGHKLY  215 (767)
Q Consensus       193 --------------------------------------------------------~VtsVafSP-dG~~LAsgSdd~V~  215 (767)
                                                                              .+..++|+| +|++++++ ++.|.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~  278 (349)
T 1jmx_B          200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLA  278 (349)
T ss_dssp             CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEE
T ss_pred             eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEE
Confidence                                                                    345677889 99999888 66799


Q ss_pred             EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCC
Q 004217          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE  263 (767)
Q Consensus       216 VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~  263 (767)
                      +||+.+++...   .+ .....+.+++|+|||++|++++.     +||+...+
T Consensus       279 ~~d~~~~~~~~---~~-~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          279 KYDLKQRKLIK---AA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             EEETTTTEEEE---EE-ECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             EEECccCeEEE---EE-cCCCCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence            99999877544   22 23456789999999998887543     55555443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.47  E-value=1.7e-12  Score=153.29  Aligned_cols=144  Identities=10%  Similarity=0.089  Sum_probs=112.8

Q ss_pred             CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCc-----EEEEEccCCCcEEEEEeCC---------CeE
Q 004217          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP-----WVVRFHPLNPTIIASGSLD---------HEV  174 (767)
Q Consensus       109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V-----~sLafsP~dg~lLaSgS~D---------GtV  174 (767)
                      ....++|+|||++|+++  |++|++||+.++++...+.+|....     ..+.|+| |++.|+.++.+         +.+
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceEE
Confidence            35689999999999886  8999999999999888888876432     3478999 89999998876         556


Q ss_pred             EEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCC------eEEecCCC---------CeE
Q 004217          175 RLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSP------RIVLRTRR---------SLR  239 (767)
Q Consensus       175 rIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~------~~l~~h~~---------~Vt  239 (767)
                      .+||+.+++......+...+..++|||||+.||.+.++.|++||+.+++..+..      ....++..         ...
T Consensus        95 ~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~  174 (740)
T 4a5s_A           95 DIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS  174 (740)
T ss_dssp             EEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             EEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence            799999999876666778899999999999999999888999999887643300      01112221         123


Q ss_pred             EEEEccCCCeEEEEEe
Q 004217          240 AVHFHPHAAPLLLTAE  255 (767)
Q Consensus       240 sVaFSPDG~~LlaSgs  255 (767)
                      ++.|||||++|+....
T Consensus       175 ~~~wSpDg~~la~~~~  190 (740)
T 4a5s_A          175 ALWWSPNGTFLAYAQF  190 (740)
T ss_dssp             CEEECTTSSEEEEEEE
T ss_pred             ceEECCCCCEEEEEEE
Confidence            5899999998887653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.45  E-value=1.6e-11  Score=130.39  Aligned_cols=179  Identities=12%  Similarity=0.087  Sum_probs=122.6

Q ss_pred             eEEEEEEcCCCEEEEEe-CCCeEEEEeCCCC-CCC-----------------CCCCCeEEEEECCCCCeEEEEe-CCCeE
Q 004217           72 QIFEAGRDARRGLASWV-EAESLHHLRPKYC-PLS-----------------PPPRSTIAAAFSPDGKTLASTH-GDHTV  131 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs-~DgsIrlWd~~t~-~L~-----------------gH~~sVtsVaFSpDG~~LASgs-~DGtV  131 (767)
                      ...++.  +++.|+... .++.|.+|++... .+.                 .+...+.+++|+|||++|++++ .++.|
T Consensus       102 p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v  179 (361)
T 3scy_A          102 PCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQI  179 (361)
T ss_dssp             EEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             cEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEE
Confidence            444455  566666555 6889999998643 211                 1123468899999999776655 48899


Q ss_pred             EEEECCCCe-------E------EEEEccCCCCcEEEEEccCCCcEEEEEe-CCCeEEEEECCCCeEEEe--ec----CC
Q 004217          132 KIIDCQTGS-------C------LKVLHGHRRTPWVVRFHPLNPTIIASGS-LDHEVRLWNASTAECIGS--RD----FY  191 (767)
Q Consensus       132 rVWDl~tg~-------~------l~~L~gH~~~V~sLafsP~dg~lLaSgS-~DGtVrIWDl~tg~~i~~--l~----h~  191 (767)
                      ++|++....       .      ......+...+..++|+| ++++++.++ .+++|.+||+.+++....  +.    +.
T Consensus       180 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~  258 (361)
T 3scy_A          180 HKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNA  258 (361)
T ss_dssp             EEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCC
T ss_pred             EEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCC
Confidence            999887533       1      112233455688999999 888766665 699999999997765322  21    23


Q ss_pred             CCeEEEEEcCCCCEEEEEECC---cEEEEEcC--CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          192 RPIASIAFHASGELLAVASGH---KLYIWRYN--MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       192 ~~VtsVafSPdG~~LAsgSdd---~V~VWDl~--t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .....++|+|+|++|+++..+   .|.+|++.  +++... ...... ...+..++|+|||++|+++..
T Consensus       259 ~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~-~~~~~~-g~~~~~~~~spdg~~l~~~~~  325 (361)
T 3scy_A          259 QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTK-VGYQLT-GIHPRNFIITPNGKYLLVACR  325 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEE-EEEEEC-SSCCCEEEECTTSCEEEEEET
T ss_pred             CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEE-eeEecC-CCCCceEEECCCCCEEEEEEC
Confidence            457899999999998777643   49999996  333211 112222 567889999999998888763

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.43  E-value=7.1e-12  Score=134.66  Aligned_cols=182  Identities=11%  Similarity=0.045  Sum_probs=127.6

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCC-CCCCC---CCC--CCeEEEEECCCCCe--EEEEe-------------CCCe
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPK-YCPLS---PPP--RSTIAAAFSPDGKT--LASTH-------------GDHT  130 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~-t~~L~---gH~--~sVtsVaFSpDG~~--LASgs-------------~DGt  130 (767)
                      ...++++.+++.|++.+.+ .|.+|++. ++++.   .+.  +.+..++|+|||++  ++++.             .+++
T Consensus        42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~  120 (365)
T 1jof_A           42 ISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGY  120 (365)
T ss_dssp             CSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCE
T ss_pred             CcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCce
Confidence            4457778889999988888 99999986 55321   111  23566899999994  45553             6899


Q ss_pred             EEEEECC-CCeEEEEEc----cCCCCcEEEEEccCCCcEEEEEe-CCCeEEEEECC-CCeEEE--eec---CCCCeEEEE
Q 004217          131 VKIIDCQ-TGSCLKVLH----GHRRTPWVVRFHPLNPTIIASGS-LDHEVRLWNAS-TAECIG--SRD---FYRPIASIA  198 (767)
Q Consensus       131 VrVWDl~-tg~~l~~L~----gH~~~V~sLafsP~dg~lLaSgS-~DGtVrIWDl~-tg~~i~--~l~---h~~~VtsVa  198 (767)
                      +++|++. +++....+.    .+...+.+++|+| ++++++++. .++.|++||+. +++...  .+.   +...+..++
T Consensus       121 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~  199 (365)
T 1jof_A          121 GNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA  199 (365)
T ss_dssp             EEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE
T ss_pred             EEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeE
Confidence            9999997 466544443    2556799999999 888777665 47899999998 776532  232   356789999


Q ss_pred             EcCCCCEEEEEEC--CcEEEEEcCC--CccccCCeEEe-------cCCC------CeEEEE-EccCCCeEEEEEe
Q 004217          199 FHASGELLAVASG--HKLYIWRYNM--REETSSPRIVL-------RTRR------SLRAVH-FHPHAAPLLLTAE  255 (767)
Q Consensus       199 fSPdG~~LAsgSd--d~V~VWDl~t--~~~~~~~~~l~-------~h~~------~VtsVa-FSPDG~~LlaSgs  255 (767)
                      |+|+|++|++++.  +.|.+|+++.  ++.......+.       +|..      .+..++ |+|||++|+++..
T Consensus       200 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~  274 (365)
T 1jof_A          200 MHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             ECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence            9999999988874  4499998763  43210000111       1222      588999 9999998876654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.41  E-value=1.1e-11  Score=131.94  Aligned_cols=219  Identities=12%  Similarity=0.096  Sum_probs=146.2

Q ss_pred             CCCCCCCCeEE-----EEECCCCCeEEEEeC-CC--eEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCe
Q 004217          102 PLSPPPRSTIA-----AAFSPDGKTLASTHG-DH--TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE  173 (767)
Q Consensus       102 ~L~gH~~sVts-----VaFSpDG~~LASgs~-DG--tVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGt  173 (767)
                      ++..|......     .+|||||++|+.++. ++  .|.+||+.+++......++...+..+.|+| +++.|+.++.++.
T Consensus        25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp-dg~~l~~~~~~~~  103 (388)
T 3pe7_A           25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP-DDDALFYVKDGRN  103 (388)
T ss_dssp             ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT-TSSEEEEEETTTE
T ss_pred             EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC-CCCEEEEEeCCCe
Confidence            35556655655     899999999999887 66  488899999987777777766666788999 9999999999999


Q ss_pred             EEEEECCCCeEEEeecCC-CCeEEE--EEcCCCCEEEEEE----------------------C-CcEEEEEcCCCccccC
Q 004217          174 VRLWNASTAECIGSRDFY-RPIASI--AFHASGELLAVAS----------------------G-HKLYIWRYNMREETSS  227 (767)
Q Consensus       174 VrIWDl~tg~~i~~l~h~-~~VtsV--afSPdG~~LAsgS----------------------d-d~V~VWDl~t~~~~~~  227 (767)
                      |++||+.+++........ ..+...  .++|+|++++...                      . ..|++||+.+++..  
T Consensus       104 l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~--  181 (388)
T 3pe7_A          104 LMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST--  181 (388)
T ss_dssp             EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE--
T ss_pred             EEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE--
Confidence            999999999877665533 334333  3489999887432                      1 23999999987642  


Q ss_pred             CeEEecCCCCeEEEEEcc-CCCeEEEEEee-CCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCC
Q 004217          228 PRIVLRTRRSLRAVHFHP-HAAPLLLTAEV-NDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPP  305 (767)
Q Consensus       228 ~~~l~~h~~~VtsVaFSP-DG~~LlaSgsv-wdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slp  305 (767)
                        .+..+...+..+.|+| ||+.|+..... ++-                  ....+.+.+........+....  ....
T Consensus       182 --~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~------------------~~~~l~~~d~~~~~~~~l~~~~--~~~~  239 (388)
T 3pe7_A          182 --VILQENQWLGHPIYRPYDDSTVAFCHEGPHDL------------------VDARMWLINEDGTNMRKVKTHA--EGES  239 (388)
T ss_dssp             --EEEEESSCEEEEEEETTEEEEEEEEECSCTTT------------------SSCSEEEEETTSCCCEESCCCC--TTEE
T ss_pred             --EeecCCccccccEECCCCCCEEEEEEecCCCC------------------CcceEEEEeCCCCceEEeeeCC--CCcc
Confidence              3456677899999999 99988776641 110                  0112333332222222221110  0012


Q ss_pred             ceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeee
Q 004217          306 FLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELV  357 (767)
Q Consensus       306 il~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~  357 (767)
                      +..+.|+|||++|+......            ......+..||.++++...+
T Consensus       240 ~~~~~~spdg~~l~~~~~~~------------~~~~~~l~~~d~~~g~~~~l  279 (388)
T 3pe7_A          240 CTHEFWVPDGSALVYVSYLK------------GSPDRFIYSADPETLENRQL  279 (388)
T ss_dssp             EEEEEECTTSSCEEEEEEET------------TCCCEEEEEECTTTCCEEEE
T ss_pred             cccceECCCCCEEEEEecCC------------CCCcceEEEEecCCCceEEE
Confidence            33689999999987633221            11223588899888776544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.35  E-value=5.1e-12  Score=143.87  Aligned_cols=168  Identities=10%  Similarity=0.012  Sum_probs=125.2

Q ss_pred             EEEEcCC-CEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEEeCC----CeEEEEECCCCeEEEEEc
Q 004217           75 EAGRDAR-RGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGD----HTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        75 vA~sd~g-~~LaSgs~DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASgs~D----GtVrVWDl~tg~~l~~L~  146 (767)
                      .+++.++ ..++....++.+.+||+.+++   +..+..  .+++|||||++|++++.|    ..|++||+.+++.. .+.
T Consensus       115 ~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~  191 (582)
T 3o4h_A          115 LSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFD  191 (582)
T ss_dssp             EEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EEC
T ss_pred             eeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eee
Confidence            3444444 333333444445599998763   333333  889999999999988877    78999999988754 678


Q ss_pred             cCCCCcEEEEEccCCCcEEEEEeCCC--eEEEEECCCCeEEEeecCCCCeEEEE--------EcCCCCEEEEEECCc-EE
Q 004217          147 GHRRTPWVVRFHPLNPTIIASGSLDH--EVRLWNASTAECIGSRDFYRPIASIA--------FHASGELLAVASGHK-LY  215 (767)
Q Consensus       147 gH~~~V~sLafsP~dg~lLaSgS~DG--tVrIWDl~tg~~i~~l~h~~~VtsVa--------fSPdG~~LAsgSdd~-V~  215 (767)
                      .|...+..++|+| |++.|+++..|+  .|++||+.+++......+...+..++        |+|||.++++++.++ ++
T Consensus       192 ~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~  270 (582)
T 3o4h_A          192 SGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSA  270 (582)
T ss_dssp             CSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEE
T ss_pred             cCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEE
Confidence            8989999999999 899999888888  89999999988873234555566666        999998888887554 99


Q ss_pred             EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       216 VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +|++  ++...      .....|.+++|+ |++.+++.++
T Consensus       271 l~~~--g~~~~------~~~~~v~~~~~s-dg~~l~~~s~  301 (582)
T 3o4h_A          271 VFID--GERVE------APQGNHGRVVLW-RGKLVTSHTS  301 (582)
T ss_dssp             EEET--TEEEC------CCSSEEEEEEEE-TTEEEEEEEE
T ss_pred             EEEE--CCeec------cCCCceEEEEec-CCEEEEEEcC
Confidence            9999  44322      334678999999 8886655443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.33  E-value=9.9e-11  Score=125.70  Aligned_cols=147  Identities=14%  Similarity=0.068  Sum_probs=107.0

Q ss_pred             CCCCeEEEEECCCCCeEEEEeCCCeEEEEECC-CCeEEEEEccC-CCCcEEEEEccCCCcE--EEEEe------------
Q 004217          106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ-TGSCLKVLHGH-RRTPWVVRFHPLNPTI--IASGS------------  169 (767)
Q Consensus       106 H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~-tg~~l~~L~gH-~~~V~sLafsP~dg~l--LaSgS------------  169 (767)
                      ....+..++|+|||++|++++.+ .|.+||+. +++........ .+.+..++|+| ++++  ++++.            
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~  115 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceee
Confidence            33468899999999999999888 99999997 78765433211 13366789999 7773  44553            


Q ss_pred             -CCCeEEEEECC-CCeEEEeec-----CCCCeEEEEEcCCCCEEEEEEC--CcEEEEEcC-CCccccCCeEEe--cCCCC
Q 004217          170 -LDHEVRLWNAS-TAECIGSRD-----FYRPIASIAFHASGELLAVASG--HKLYIWRYN-MREETSSPRIVL--RTRRS  237 (767)
Q Consensus       170 -~DGtVrIWDl~-tg~~i~~l~-----h~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~-t~~~~~~~~~l~--~h~~~  237 (767)
                       .++++.+|++. +++....+.     +...+.+++|+|+|++|+++..  +.|++||+. +++... .....  .|...
T Consensus       116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~~g~~  194 (365)
T 1jof_A          116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL-VGSVDAPDPGDH  194 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE-EEEEECSSTTCC
T ss_pred             cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE-eeeEecCCCCCC
Confidence             68999999997 466544332     4567999999999999888763  459999998 555321 11222  24567


Q ss_pred             eEEEEEccCCCeEEEEEe
Q 004217          238 LRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       238 VtsVaFSPDG~~LlaSgs  255 (767)
                      +..++|+|||++++++..
T Consensus       195 p~~~~~spdg~~l~v~~~  212 (365)
T 1jof_A          195 PRWVAMHPTGNYLYALME  212 (365)
T ss_dssp             EEEEEECTTSSEEEEEET
T ss_pred             CCEeEECCCCCEEEEEEC
Confidence            999999999998877653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.33  E-value=5.3e-10  Score=118.62  Aligned_cols=174  Identities=12%  Similarity=0.086  Sum_probs=128.1

Q ss_pred             eEEEEEEcCCCEEEEEeCC------------------------CeEEEEeCCCCCCC-----CCCCCeEEEEECCCCCeE
Q 004217           72 QIFEAGRDARRGLASWVEA------------------------ESLHHLRPKYCPLS-----PPPRSTIAAAFSPDGKTL  122 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~D------------------------gsIrlWd~~t~~L~-----gH~~sVtsVaFSpDG~~L  122 (767)
                      +..+++..++..+++...+                        +.|.+||..++++.     ++......++++++|+++
T Consensus        26 v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~  105 (329)
T 3fvz_A           26 VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYW  105 (329)
T ss_dssp             EEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEE
T ss_pred             ceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEE
Confidence            5557777778877777766                        47999999876432     455678999999999988


Q ss_pred             EEEeCCCeEEEEECCCCe-EEEEE---------ccCCCCcEEEEEccCCCcEEEEEe-CCCeEEEEECCCCeEEEeecCC
Q 004217          123 ASTHGDHTVKIIDCQTGS-CLKVL---------HGHRRTPWVVRFHPLNPTIIASGS-LDHEVRLWNASTAECIGSRDFY  191 (767)
Q Consensus       123 ASgs~DGtVrVWDl~tg~-~l~~L---------~gH~~~V~sLafsP~dg~lLaSgS-~DGtVrIWDl~tg~~i~~l~h~  191 (767)
                      ++...++.|++||..... .+..+         .++...+..++|+|.+++++++.+ .++.|++|| .+++.+..+...
T Consensus       106 v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~  184 (329)
T 3fvz_A          106 VTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEE  184 (329)
T ss_dssp             EEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEE
T ss_pred             EEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccC
Confidence            888889999999986542 45555         344557899999996788888886 699999999 567777665421


Q ss_pred             -----------CCeEEEEEcCC-CCEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCC
Q 004217          192 -----------RPIASIAFHAS-GELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA  248 (767)
Q Consensus       192 -----------~~VtsVafSPd-G~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~  248 (767)
                                 .....++++|+ |+++++... ++|++||..+++.+. ......+...+.+++|+| +.
T Consensus       185 g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~-~~~~~~~~~~~~~~~~~p-g~  252 (329)
T 3fvz_A          185 SSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR-EIKHASFGRNVFAISYIP-GF  252 (329)
T ss_dssp             CCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EECCTTTTTCEEEEEEET-TE
T ss_pred             CCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE-EEeccccCCCcceeeecC-CE
Confidence                       23789999999 555555444 449999998776544 111134567889999999 54

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.32  E-value=3.2e-11  Score=128.06  Aligned_cols=174  Identities=7%  Similarity=-0.009  Sum_probs=120.7

Q ss_pred             EEEcCCCEEEEEeCC---CeEEEEeCCCCC---CCCCCCCe-EEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217           76 AGRDARRGLASWVEA---ESLHHLRPKYCP---LSPPPRST-IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (767)
Q Consensus        76 A~sd~g~~LaSgs~D---gsIrlWd~~t~~---L~gH~~sV-tsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH  148 (767)
                      +++.+|+.|+.....   ..|.+|+..+++   +..+...+ ..+.|+|||++|+.++.++.|++||+.+++....+..+
T Consensus        42 ~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~  121 (396)
T 3c5m_A           42 CFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVD  121 (396)
T ss_dssp             CBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred             cCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecc
Confidence            344567776655432   368888887763   43333333 34889999999999999999999999998866666545


Q ss_pred             CCCcEE-------------------EEEccCCCcEEEEE-----eCCCeEEEEECCCCeEEEeecCCCCeEEEEEcC-CC
Q 004217          149 RRTPWV-------------------VRFHPLNPTIIASG-----SLDHEVRLWNASTAECIGSRDFYRPIASIAFHA-SG  203 (767)
Q Consensus       149 ~~~V~s-------------------LafsP~dg~lLaSg-----S~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSP-dG  203 (767)
                      ......                   +.|+| +++.++..     ..+..|.+||+.+++......+...+..+.|+| +|
T Consensus       122 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg  200 (396)
T 3c5m_A          122 EEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDD  200 (396)
T ss_dssp             TTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEE
T ss_pred             cccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCC
Confidence            442222                   24566 55544433     356789999999988777777778899999999 88


Q ss_pred             CEEEEEEC-------CcEEEEEcCCCccccCCeEEecC--CCCeEEEEEccCCCeEEEEE
Q 004217          204 ELLAVASG-------HKLYIWRYNMREETSSPRIVLRT--RRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       204 ~~LAsgSd-------d~V~VWDl~t~~~~~~~~~l~~h--~~~VtsVaFSPDG~~LlaSg  254 (767)
                      +.|+..++       ..|.+||+..++...    +..+  ...+..+.|+|||++|+..+
T Consensus       201 ~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~~spdg~~l~~~~  256 (396)
T 3c5m_A          201 STVGFCHEGPHDLVDARMWLVNEDGSNVRK----IKEHAEGESCTHEFWIPDGSAMAYVS  256 (396)
T ss_dssp             EEEEEEECSCSSSCSCCCEEEETTSCCCEE----SSCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred             CEEEEEecCCCCCCCceEEEEECCCCceeE----eeccCCCccccceEECCCCCEEEEEe
Confidence            87776653       248888887654322    2222  23588899999999887763

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.27  E-value=1e-10  Score=134.78  Aligned_cols=180  Identities=12%  Similarity=0.043  Sum_probs=126.2

Q ss_pred             EEEEEEcCCCEEEEE--eCCCeEEEEeCCC-C---CCCCCCCCeE---------EEEEC--CCCCe-EEEEeC-CCeEEE
Q 004217           73 IFEAGRDARRGLASW--VEAESLHHLRPKY-C---PLSPPPRSTI---------AAAFS--PDGKT-LASTHG-DHTVKI  133 (767)
Q Consensus        73 ~~vA~sd~g~~LaSg--s~DgsIrlWd~~t-~---~L~gH~~sVt---------sVaFS--pDG~~-LASgs~-DGtVrV  133 (767)
                      ...+++.++..+++.  .+++...+|.... +   ++..|...+.         ...|+  |||++ |+.++. +..|.+
T Consensus        27 ~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~  106 (662)
T 3azo_A           27 ACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYA  106 (662)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEE
T ss_pred             ceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEE
Confidence            334454444445555  4577888898532 2   4667776666         66666  99998 776654 566777


Q ss_pred             EECC--C-CeEEEEEcc-----CCCCcEEEEEccCCCcEEEEEeCC----------CeEEEEECCC------CeEEEee-
Q 004217          134 IDCQ--T-GSCLKVLHG-----HRRTPWVVRFHPLNPTIIASGSLD----------HEVRLWNAST------AECIGSR-  188 (767)
Q Consensus       134 WDl~--t-g~~l~~L~g-----H~~~V~sLafsP~dg~lLaSgS~D----------GtVrIWDl~t------g~~i~~l-  188 (767)
                      |++.  + ++ ...+..     |...+..++|+| |++.|++++.|          .+|++||+.+      ++..... 
T Consensus       107 ~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~  184 (662)
T 3azo_A          107 FEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD  184 (662)
T ss_dssp             ECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC
T ss_pred             EcCCCCCCCC-CEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe
Confidence            7765  3 43 455655     667788999999 88999888877          5899999998      6665555 


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEE-CC--------cEEEEEcC-CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          189 DFYRPIASIAFHASGELLAVAS-GH--------KLYIWRYN-MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       189 ~h~~~VtsVafSPdG~~LAsgS-dd--------~V~VWDl~-t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .+...+..++|+|||++|+.++ ++        .|++||+. ++...........|...+..+.|+|||+ +++++.
T Consensus       185 ~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~  260 (662)
T 3azo_A          185 DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATD  260 (662)
T ss_dssp             SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEEC
T ss_pred             cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEEC
Confidence            5566788899999999998776 32        39999998 4521111123344578899999999999 555543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.20  E-value=2.5e-09  Score=110.58  Aligned_cols=179  Identities=14%  Similarity=0.037  Sum_probs=126.6

Q ss_pred             eEEEEEEcCCC-EEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC
Q 004217           72 QIFEAGRDARR-GLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (767)
Q Consensus        72 ~~~vA~sd~g~-~LaSgs~DgsIrlWd~~t~--~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH  148 (767)
                      ....++..++. .+++...++.|..|+..++  .+..+...+.+++|+++|+++++...++.|.+||..+++........
T Consensus        30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~  109 (296)
T 3e5z_A           30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSF  109 (296)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEE
T ss_pred             ccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeecc
Confidence            34456666666 7788888999999998875  23456678999999999998888777889999999888755443221


Q ss_pred             ----CCCcEEEEEccCCCcEEEEE----e-------------CCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEE
Q 004217          149 ----RRTPWVVRFHPLNPTIIASG----S-------------LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLA  207 (767)
Q Consensus       149 ----~~~V~sLafsP~dg~lLaSg----S-------------~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LA  207 (767)
                          ...+..++++| +++++++.    .             ..+.|..+|.. ++.............++|+|+|++|+
T Consensus       110 ~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv  187 (296)
T 3e5z_A          110 EGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLV  187 (296)
T ss_dssp             TTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEE
T ss_pred             CCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEE
Confidence                23567899999 88888873    2             13456666655 55544455666788999999999885


Q ss_pred             EEEC-CcEEEEEcC-CCcc-ccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217          208 VASG-HKLYIWRYN-MREE-TSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       208 sgSd-d~V~VWDl~-t~~~-~~~~~~l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      +.+. +.|++||+. .++. .. ...+..+...+..++++++|+.++++
T Consensus       188 ~~~~~~~i~~~~~~~~g~~~~~-~~~~~~~~~~p~~i~~d~~G~l~v~~  235 (296)
T 3e5z_A          188 SDTGDNATHRYCLNARGETEYQ-GVHFTVEPGKTDGLRVDAGGLIWASA  235 (296)
T ss_dssp             EETTTTEEEEEEECSSSCEEEE-EEEECCSSSCCCSEEEBTTSCEEEEE
T ss_pred             EeCCCCeEEEEEECCCCcCcCC-CeEeeCCCCCCCeEEECCCCCEEEEc
Confidence            5544 459999997 3332 11 11223345567889999999855554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.18  E-value=1.2e-08  Score=104.65  Aligned_cols=175  Identities=10%  Similarity=0.076  Sum_probs=127.6

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC---C------CCCCCCeEEEEE-CCCCCeEEEEeC-CCeEEEEECCCCe
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP---L------SPPPRSTIAAAF-SPDGKTLASTHG-DHTVKIIDCQTGS  140 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~---L------~gH~~sVtsVaF-SpDG~~LASgs~-DGtVrVWDl~tg~  140 (767)
                      +..++...++..+++...++.|.+||.....   +      .+|...+.++++ .++++++++... ++.|++|| .+++
T Consensus        32 p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~  110 (286)
T 1q7f_A           32 PSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQ  110 (286)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSC
T ss_pred             CceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCc
Confidence            5556676777777777888999999987432   1      234567899999 567777776643 88999999 6677


Q ss_pred             EEEEEc-cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec---CCCCeEEEEEcCCCCEEEEEE-CCcEE
Q 004217          141 CLKVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVAS-GHKLY  215 (767)
Q Consensus       141 ~l~~L~-gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~---h~~~VtsVafSPdG~~LAsgS-dd~V~  215 (767)
                      .+..+. .+...+..++++| +++++++...++.|.+||.. ++.+..+.   +...+..++++++|+++++.. ++.|+
T Consensus       111 ~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~  188 (286)
T 1q7f_A          111 FVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK  188 (286)
T ss_dssp             EEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred             EEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEE
Confidence            777664 3446789999999 78888888889999999964 55555553   345689999999999777665 45699


Q ss_pred             EEEcCCCccccCCeEEec--CCCCeEEEEEccCCCeEEEE
Q 004217          216 IWRYNMREETSSPRIVLR--TRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       216 VWDl~t~~~~~~~~~l~~--h~~~VtsVaFSPDG~~LlaS  253 (767)
                      +||.... .+.   .+..  +...+..++++++|+.+++.
T Consensus       189 ~~~~~g~-~~~---~~~~~g~~~~p~~i~~d~~G~l~v~~  224 (286)
T 1q7f_A          189 VFNYEGQ-YLR---QIGGEGITNYPIGVGINSNGEILIAD  224 (286)
T ss_dssp             EEETTCC-EEE---EESCTTTSCSEEEEEECTTCCEEEEE
T ss_pred             EEcCCCC-EEE---EEccCCccCCCcEEEECCCCCEEEEe
Confidence            9997543 222   2222  23578999999999855544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.18  E-value=6.3e-10  Score=128.09  Aligned_cols=177  Identities=14%  Similarity=0.037  Sum_probs=129.3

Q ss_pred             eEEEEEEcCCCEEEEEeCC----------CeEEEEeCCC------C---CCC-CCCCCeEEEEECCCCCeEEEEeCC---
Q 004217           72 QIFEAGRDARRGLASWVEA----------ESLHHLRPKY------C---PLS-PPPRSTIAAAFSPDGKTLASTHGD---  128 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~D----------gsIrlWd~~t------~---~L~-gH~~sVtsVaFSpDG~~LASgs~D---  128 (767)
                      ....+++.+++.|+..+.+          ..|.+|++.+      +   .+. .+...+..++|||||++|+.++.+   
T Consensus       132 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~  211 (662)
T 3azo_A          132 WADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPR  211 (662)
T ss_dssp             EEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTC
T ss_pred             ccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCC
Confidence            4567788999999988876          5899999987      5   355 666778899999999999988765   


Q ss_pred             -----CeEEEEECC-CC---eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCC--eEEEEECCCCeEEEeecCCCC----
Q 004217          129 -----HTVKIIDCQ-TG---SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH--EVRLWNASTAECIGSRDFYRP----  193 (767)
Q Consensus       129 -----GtVrVWDl~-tg---~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DG--tVrIWDl~tg~~i~~l~h~~~----  193 (767)
                           ..|++||+. ++   +......+|...+..+.|+| ++++++++..|+  .|.+||+.+++......+...    
T Consensus       212 ~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p  290 (662)
T 3azo_A          212 MPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGP  290 (662)
T ss_dssp             CTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCC
T ss_pred             CCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCCceeecccccccccCc
Confidence                 379999999 57   44444555678899999999 777888888888  677777767776555433221    


Q ss_pred             -----eEEEEEcCCCCEEEEEECCcEEEE--EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          194 -----IASIAFHASGELLAVASGHKLYIW--RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       194 -----VtsVafSPdG~~LAsgSdd~V~VW--Dl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                           +..++|+|+++++++++.+.++||  |+.+++.    ..+..|...+..+ |+++++.++.++
T Consensus       291 ~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~----~~l~~~~~~~~~~-~s~~~~~~~~~~  353 (662)
T 3azo_A          291 LWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGEL----VDAAGPWTEWAAT-LTVSGTRAVGVA  353 (662)
T ss_dssp             CCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEE----EECCSSCCEEEEE-EEEETTEEEEEE
T ss_pred             cccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcE----EEecCCCCeEEEE-EecCCCEEEEEE
Confidence                 467899999999999888337777  5554442    2455566667766 255666555443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.18  E-value=1.1e-08  Score=107.13  Aligned_cols=181  Identities=8%  Similarity=-0.044  Sum_probs=126.5

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCCeEEEEeCC----CeEEEEECCCCeEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTHGD----HTVKIIDCQTGSCLK  143 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~----gH~~sVtsVaFSpDG~~LASgs~D----GtVrVWDl~tg~~l~  143 (767)
                      ....++..++..+++...++.|.+||..++++.    .+...+.+++|+++|+++++...+    +.|.+||.++++...
T Consensus        47 ~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~  126 (333)
T 2dg1_A           47 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD  126 (333)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred             ccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE
Confidence            344556667776777888999999999876422    466789999999999988877766    689999998877554


Q ss_pred             EEc--cCCCCcEEEEEccCCCcEEEEEeC------CCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE--CCc
Q 004217          144 VLH--GHRRTPWVVRFHPLNPTIIASGSL------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHK  213 (767)
Q Consensus       144 ~L~--gH~~~V~sLafsP~dg~lLaSgS~------DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS--dd~  213 (767)
                      .+.  .+...+..+.++| +++++++...      .+.|..||..+++..........+..++|+|+|++|+++.  ++.
T Consensus       127 ~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~  205 (333)
T 2dg1_A          127 IIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR  205 (333)
T ss_dssp             EECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred             EEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCe
Confidence            443  2445789999999 7888887654      3567777766655544433345678999999999776655  355


Q ss_pred             EEEEEcCC-CccccCC--eEEec--CCCCeEEEEEccCCCeEEEE
Q 004217          214 LYIWRYNM-REETSSP--RIVLR--TRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       214 V~VWDl~t-~~~~~~~--~~l~~--h~~~VtsVaFSPDG~~LlaS  253 (767)
                      |++||+++ +......  .....  ....+..++++++|+.++++
T Consensus       206 i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~  250 (333)
T 2dg1_A          206 LHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM  250 (333)
T ss_dssp             EEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE
T ss_pred             EEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEE
Confidence            99999964 2221100  01111  11467889999999865554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.16  E-value=3.1e-09  Score=124.64  Aligned_cols=179  Identities=10%  Similarity=0.012  Sum_probs=123.8

Q ss_pred             eEEEEEEcCCCEEEEEeCCC-----eEEEEeCCCCCCC---CCCCCeEEEEECCCCCeEEEEeCCCe-------------
Q 004217           72 QIFEAGRDARRGLASWVEAE-----SLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHT-------------  130 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~Dg-----sIrlWd~~t~~L~---gH~~sVtsVaFSpDG~~LASgs~DGt-------------  130 (767)
                      ....+++.+++.|+....++     .|++||+.+++..   .....+..++|+|||+.|+.++.++.             
T Consensus       127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~  206 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCC
Confidence            45567788888888665433     8999999987432   11223678999999999999988766             


Q ss_pred             ---EEEEECCCCeE--EEEEc--cCCCCcEEEEEccCCCcEEEEEeC-----CCeEEEEECCC------C--eEEEeecC
Q 004217          131 ---VKIIDCQTGSC--LKVLH--GHRRTPWVVRFHPLNPTIIASGSL-----DHEVRLWNAST------A--ECIGSRDF  190 (767)
Q Consensus       131 ---VrVWDl~tg~~--l~~L~--gH~~~V~sLafsP~dg~lLaSgS~-----DGtVrIWDl~t------g--~~i~~l~h  190 (767)
                         |++|++.+++.  ...+.  .|...+..+.|+| ++++|+..+.     +..|++||+.+      +  .......+
T Consensus       207 ~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~  285 (710)
T 2xdw_A          207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN  285 (710)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred             CCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC
Confidence               99999988752  22333  3556678999999 8887777664     67899999986      4  23333444


Q ss_pred             CCCeEEEEEcCCCCEEEEEEC-C----cEEEEEcCCCccccCCeEEecCCC--CeEEEEEccCCCeEEEEE
Q 004217          191 YRPIASIAFHASGELLAVASG-H----KLYIWRYNMREETSSPRIVLRTRR--SLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       191 ~~~VtsVafSPdG~~LAsgSd-d----~V~VWDl~t~~~~~~~~~l~~h~~--~VtsVaFSPDG~~LlaSg  254 (767)
                      ...+.. .|+|+|+.|+..++ +    .|.+||+.++.... ...+..|..  .+..++|++++. ++++.
T Consensus       286 ~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~-lv~~~  353 (710)
T 2xdw_A          286 FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK-WKVLVPEHEKDVLEWVACVRSNF-LVLCY  353 (710)
T ss_dssp             SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGG-CEEEECCCSSCEEEEEEEETTTE-EEEEE
T ss_pred             CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccc-ceeccCCCCCCeEEEEEEEcCCE-EEEEE
Confidence            455544 58899998777663 2    29999998764211 234555544  688899996655 55544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.14  E-value=9.6e-09  Score=109.27  Aligned_cols=172  Identities=9%  Similarity=0.010  Sum_probs=126.8

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCC-----C
Q 004217           79 DARRGLASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-----R  150 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~~L~---gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~-----~  150 (767)
                      ++++..++...++.|.+||..+.++.   ........++++++++++++...++.|.+||..+++....+....     .
T Consensus        52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~  131 (328)
T 3dsm_A           52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESG  131 (328)
T ss_dssp             ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred             ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCC
Confidence            34555555556789999999987532   244678999999998555554489999999999999887775433     1


Q ss_pred             CcEEEEEccCCCcEEEEEe-CCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC-----------CcEEEEE
Q 004217          151 TPWVVRFHPLNPTIIASGS-LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-----------HKLYIWR  218 (767)
Q Consensus       151 ~V~sLafsP~dg~lLaSgS-~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd-----------d~V~VWD  218 (767)
                      ....+++ . ++.++++.. .+++|.+||+.+++.+..+........++++|+|++++++..           +.|.+||
T Consensus       132 ~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id  209 (328)
T 3dsm_A          132 STEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRID  209 (328)
T ss_dssp             BCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEE
T ss_pred             CcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEE
Confidence            4567777 4 566666655 489999999999998888776666778999999997777654           3599999


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      ..+.+...  ............++|+||+++|.++.
T Consensus       210 ~~t~~v~~--~~~~~~g~~p~~la~~~d~~~lyv~~  243 (328)
T 3dsm_A          210 AETFTVEK--QFKFKLGDWPSEVQLNGTRDTLYWIN  243 (328)
T ss_dssp             TTTTEEEE--EEECCTTCCCEEEEECTTSCEEEEES
T ss_pred             CCCCeEEE--EEecCCCCCceeEEEecCCCEEEEEc
Confidence            98877543  11122234789999999999877654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.14  E-value=1e-08  Score=104.98  Aligned_cols=174  Identities=13%  Similarity=0.091  Sum_probs=124.4

Q ss_pred             eEEEEEEcCCCEEEEEeC--CCeEEEEeCCCCC---C-CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217           72 QIFEAGRDARRGLASWVE--AESLHHLRPKYCP---L-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~--DgsIrlWd~~t~~---L-~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L  145 (767)
                      +..+++.+....++....  ++.|.+|+.....   + ..+...+.+++++++|+++++...++.|++||.. ++.+..+
T Consensus        79 p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~  157 (286)
T 1q7f_A           79 PNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKF  157 (286)
T ss_dssp             EEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred             ceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEe
Confidence            455666444444444443  7899999954432   2 2344678999999999988888888999999964 6666666


Q ss_pred             c--cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC---CCCeEEEEEcCCCCEEEEEEC-C-cEEEEE
Q 004217          146 H--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF---YRPIASIAFHASGELLAVASG-H-KLYIWR  218 (767)
Q Consensus       146 ~--gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h---~~~VtsVafSPdG~~LAsgSd-d-~V~VWD  218 (767)
                      .  ++...+..+++++ +++++++...++.|++||.. ++.+..+..   ...+..++++++|+++++... + +|.+||
T Consensus       158 ~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~  235 (286)
T 1q7f_A          158 GCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT  235 (286)
T ss_dssp             ECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred             CCCCccCCcEEEEECC-CCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence            4  4456789999999 88888888889999999974 555555543   257899999999998887764 3 699999


Q ss_pred             cCCCccccCCeEEecC--CCCeEEEEEccCCCeEEE
Q 004217          219 YNMREETSSPRIVLRT--RRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       219 l~t~~~~~~~~~l~~h--~~~VtsVaFSPDG~~Lla  252 (767)
                      .. ++.+.   .+..+  ...+.+++|+|+|+.+++
T Consensus       236 ~~-g~~~~---~~~~~~~~~~~~~i~~~~~g~l~vs  267 (286)
T 1q7f_A          236 QD-GQLIS---ALESKVKHAQCFDVALMDDGSVVLA  267 (286)
T ss_dssp             TT-SCEEE---EEEESSCCSCEEEEEEETTTEEEEE
T ss_pred             CC-CCEEE---EEcccCCCCcceeEEECCCCcEEEE
Confidence            64 33322   23333  234789999999984443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.14  E-value=3.2e-10  Score=120.28  Aligned_cols=142  Identities=10%  Similarity=-0.002  Sum_probs=101.3

Q ss_pred             CCeEEEEECCCCCeEEEEeCC---CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE
Q 004217          108 RSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC  184 (767)
Q Consensus       108 ~sVtsVaFSpDG~~LASgs~D---GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~  184 (767)
                      ..+..++|||||++|+....+   ..|.+||+.+++......++......+.|+| +++.|+.++.++.|++||+.+++.
T Consensus        36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~  114 (396)
T 3c5m_A           36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST-DERAFFYVKNELNLMKVDLETLEE  114 (396)
T ss_dssp             CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT-TSSEEEEEETTTEEEEEETTTCCE
T ss_pred             eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC-CCCEEEEEEcCCcEEEEECCCCCc
Confidence            337788999999998877543   4789999998876544333333333478999 899999999999999999999887


Q ss_pred             EEeec-CCCCeEE-------------------EEEcCCCCEEEEEE-----C-CcEEEEEcCCCccccCCeEEecCCCCe
Q 004217          185 IGSRD-FYRPIAS-------------------IAFHASGELLAVAS-----G-HKLYIWRYNMREETSSPRIVLRTRRSL  238 (767)
Q Consensus       185 i~~l~-h~~~Vts-------------------VafSPdG~~LAsgS-----d-d~V~VWDl~t~~~~~~~~~l~~h~~~V  238 (767)
                      ..... +......                   +.|+|++++++...     . ..|++||+.+++...    +..+...+
T Consensus       115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~----~~~~~~~~  190 (396)
T 3c5m_A          115 QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEV----IHQDTAWL  190 (396)
T ss_dssp             EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEE----EEEESSCE
T ss_pred             EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEe----eccCCccc
Confidence            66544 2222222                   35677777665542     2 239999998876433    34567789


Q ss_pred             EEEEEcc-CCCeEEEEE
Q 004217          239 RAVHFHP-HAAPLLLTA  254 (767)
Q Consensus       239 tsVaFSP-DG~~LlaSg  254 (767)
                      ..+.|+| |++.|+...
T Consensus       191 ~~~~~sp~dg~~l~~~~  207 (396)
T 3c5m_A          191 GHPIYRPFDDSTVGFCH  207 (396)
T ss_dssp             EEEEEETTEEEEEEEEE
T ss_pred             ccceECCCCCCEEEEEe
Confidence            9999999 788777665

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.13  E-value=1.3e-09  Score=120.46  Aligned_cols=171  Identities=11%  Similarity=0.025  Sum_probs=130.1

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC--------------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECC
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC--------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ  137 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~--------------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~  137 (767)
                      ..++++++.++.+++++.+ .+.+|+.+.-              ....+.. |+.|+|  |+++|+++ .++.|++||+.
T Consensus        40 ~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~  114 (388)
T 1xip_A           40 LQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE  114 (388)
T ss_dssp             CBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred             ccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence            4567788899999999887 5666985421              1234566 999999  99999999 88999999998


Q ss_pred             CCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE-CCcEEE
Q 004217          138 TGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYI  216 (767)
Q Consensus       138 tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS-dd~V~V  216 (767)
                      +......+..|...+..+.+.+ .  .++.+..||+|.+||+.++....   +...|++++|+|+|  ++.|. ++.+++
T Consensus       115 sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~  186 (388)
T 1xip_A          115 ELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQS  186 (388)
T ss_dssp             STTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEEE
T ss_pred             hhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEE
Confidence            8766666777888898888876 2  38888999999999999887654   34689999999999  45555 555999


Q ss_pred             EEcCCCcc--cc---CCeEEe---cCCCCeEEEEEccCCCeEEEEEe
Q 004217          217 WRYNMREE--TS---SPRIVL---RTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       217 WDl~t~~~--~~---~~~~l~---~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      |+......  ..   .+..+.   +|...|.+|.|.+++.++++-..
T Consensus       187 ~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~  233 (388)
T 1xip_A          187 FAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN  233 (388)
T ss_dssp             EEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred             EcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence            98877653  11   010112   37789999999999998776554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.12  E-value=1.7e-09  Score=117.17  Aligned_cols=170  Identities=10%  Similarity=0.096  Sum_probs=126.0

Q ss_pred             EEEEEcCCCEEEEEeC----------CCeEEEEeCCCCCCC----C------CCCCeEEEEECCCCCeEEEEeC--CCeE
Q 004217           74 FEAGRDARRGLASWVE----------AESLHHLRPKYCPLS----P------PPRSTIAAAFSPDGKTLASTHG--DHTV  131 (767)
Q Consensus        74 ~vA~sd~g~~LaSgs~----------DgsIrlWd~~t~~L~----g------H~~sVtsVaFSpDG~~LASgs~--DGtV  131 (767)
                      -++++.+++.++...+          ++.|.+||..+.+..    .      +......++|+|||++|+++..  +++|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            6788899999998863          667999999875321    1      2345678999999999998864  5899


Q ss_pred             EEEECCCCeEEEE-EccC-------------------------------CCCcE--------------------------
Q 004217          132 KIIDCQTGSCLKV-LHGH-------------------------------RRTPW--------------------------  153 (767)
Q Consensus       132 rVWDl~tg~~l~~-L~gH-------------------------------~~~V~--------------------------  153 (767)
                      .+||+++++.+.. +...                               .+.+.                          
T Consensus       134 ~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  213 (361)
T 2oiz_A          134 GIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDK  213 (361)
T ss_dssp             EEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSE
T ss_pred             EEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCE
Confidence            9999988776655 2100                               00000                          


Q ss_pred             --------------------------------------------EEEEccCCCcEEEEEeC-----------CCeEEEEE
Q 004217          154 --------------------------------------------VVRFHPLNPTIIASGSL-----------DHEVRLWN  178 (767)
Q Consensus       154 --------------------------------------------sLafsP~dg~lLaSgS~-----------DGtVrIWD  178 (767)
                                                                  .++|+| +++.++.+..           +++|.+||
T Consensus       214 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~v~viD  292 (361)
T 2oiz_A          214 AHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTHKFPAAEIWVMD  292 (361)
T ss_dssp             EEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCTTCCCSEEEEEE
T ss_pred             EEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccccCCCceEEEEE
Confidence                                                        156777 5444444322           34899999


Q ss_pred             CCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCC--ccccCCeEEecCCCCeEEEEEccCCC
Q 004217          179 ASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMR--EETSSPRIVLRTRRSLRAVHFHPHAA  248 (767)
Q Consensus       179 l~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~--~~~~~~~~l~~h~~~VtsVaFSPDG~  248 (767)
                      +.+++.+..+.... +..++|+|+|++|++++.+.|.+||..++  +.+.   .+..+......++|+|||.
T Consensus       293 ~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~---~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          293 TKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLR---TIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             TTTTEEEEEEECTT-CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEE---EETTSCSSEEEEEECCCSC
T ss_pred             CCCCcEEEEEecCC-eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeE---EeccCCCCcEEEEecCCCC
Confidence            99999999887555 99999999999999888866999999998  6544   4456777889999999996

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.12  E-value=6.8e-09  Score=121.51  Aligned_cols=177  Identities=11%  Similarity=-0.022  Sum_probs=123.1

Q ss_pred             eEEEEEEcCCCEEE-----EEeCCCeEEEEeCCCCCCC--CCCCCe--EEEEECCCCCeEEEEeCCCe------------
Q 004217           72 QIFEAGRDARRGLA-----SWVEAESLHHLRPKYCPLS--PPPRST--IAAAFSPDGKTLASTHGDHT------------  130 (767)
Q Consensus        72 ~~~vA~sd~g~~La-----Sgs~DgsIrlWd~~t~~L~--gH~~sV--tsVaFSpDG~~LASgs~DGt------------  130 (767)
                      ....+++.+|+.|+     .|+++..|++||+.+++..  .+...+  ..++|+|||+.|+.++.|..            
T Consensus       123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~  202 (695)
T 2bkl_A          123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYT  202 (695)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGC
T ss_pred             EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCC
Confidence            55567788898888     4555678999999988543  233334  78999999999999998776            


Q ss_pred             -EEEEECCCCe----EEEEEccCCCCcEEEEEccCCCcEEEEEeCCC----eEEEEECCCCeEEEeecCCCCeEEEEEcC
Q 004217          131 -VKIIDCQTGS----CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH----EVRLWNASTAECIGSRDFYRPIASIAFHA  201 (767)
Q Consensus       131 -VrVWDl~tg~----~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DG----tVrIWDl~tg~~i~~l~h~~~VtsVafSP  201 (767)
                       |++|++.++.    .+.....|...+..+.|+| ++++|+..+.++    .|.+||..+++......+...+....| +
T Consensus       203 ~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~  280 (695)
T 2bkl_A          203 TIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-W  280 (695)
T ss_dssp             EEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-E
T ss_pred             EEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-c
Confidence             9999998875    3333344566788999999 778777776665    777887766665555555556666667 5


Q ss_pred             CCCEEEEEEC-----CcEEEEEcCCCccccCCeEEecC--CCCeEEEEEccCCCeEEEEE
Q 004217          202 SGELLAVASG-----HKLYIWRYNMREETSSPRIVLRT--RRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       202 dG~~LAsgSd-----d~V~VWDl~t~~~~~~~~~l~~h--~~~VtsVaFSPDG~~LlaSg  254 (767)
                      +|. |+..++     ..|.+||+.+++... ...+..+  ...+..++|+ ++. ++++.
T Consensus       281 ~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~l~~~~~~-~~~-lv~~~  336 (695)
T 2bkl_A          281 KDR-FYVLTDEGAPRQRVFEVDPAKPARAS-WKEIVPEDSSASLLSVSIV-GGH-LSLEY  336 (695)
T ss_dssp             TTE-EEEEECTTCTTCEEEEEBTTBCSGGG-CEEEECCCSSCEEEEEEEE-TTE-EEEEE
T ss_pred             CCc-EEEEECCCCCCCEEEEEeCCCCCccC-CeEEecCCCCCeEEEEEEE-CCE-EEEEE
Confidence            666 554443     239999998765311 1234433  4567888888 444 55544

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.11  E-value=6e-09  Score=109.27  Aligned_cols=153  Identities=15%  Similarity=0.175  Sum_probs=106.0

Q ss_pred             CCeEEEEeCCCCCCCCCCCCeEEEEECCCCCeEEEEeCC---C--eEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcE
Q 004217           90 AESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGD---H--TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI  164 (767)
Q Consensus        90 DgsIrlWd~~t~~L~gH~~sVtsVaFSpDG~~LASgs~D---G--tVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~l  164 (767)
                      +..|.+|++.+++...- ..+..++|||||++|+..+.+   +  .|.+||+.+++.......+ . +..+.|+| +++.
T Consensus        42 ~~~l~~~d~~~~~~~~l-~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~  117 (347)
T 2gop_A           42 ENTIVIENLKNNARRFI-ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRK  117 (347)
T ss_dssp             EEEEEEEETTTCCEEEE-ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSE
T ss_pred             cceEEEEeCCCCceEEc-ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCE
Confidence            56788999877632111 568899999999999988754   3  4888899888766555443 3 99999999 8887


Q ss_pred             EEEEeCC---------------------------CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC-----
Q 004217          165 IASGSLD---------------------------HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-----  212 (767)
Q Consensus       165 LaSgS~D---------------------------GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd-----  212 (767)
                      |+.++.+                           ..|.+||+.+++.+..+... .+..++|+|+| +++++..+     
T Consensus       118 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~  195 (347)
T 2gop_A          118 LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQ  195 (347)
T ss_dssp             EEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCC
T ss_pred             EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEeccccccc
Confidence            7776632                           57999999998873333323 78899999999 77777532     


Q ss_pred             ---cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          213 ---KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       213 ---~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                         ...||.+++++. .   .+..+ ..+..+  +|||++|+..+.
T Consensus       196 ~~~~~~l~~~d~~~~-~---~l~~~-~~~~~~--spdg~~l~~~~~  234 (347)
T 2gop_A          196 YFKFWDIYIWEDGKE-E---KMFEK-VSFYAV--DSDGERILLYGK  234 (347)
T ss_dssp             SSCCEEEEEEETTEE-E---EEEEE-ESEEEE--EECSSCEEEEEC
T ss_pred             ccccccEEEeCCCce-E---EeccC-cceeeE--CCCCCEEEEEEc
Confidence               334444434332 2   23334 455554  999998887764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.11  E-value=4.4e-09  Score=111.52  Aligned_cols=177  Identities=12%  Similarity=0.149  Sum_probs=134.3

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC--CC------------CCCCCCeEEEEECC-CCCeEEEEe-CCCeEEEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC--PL------------SPPPRSTIAAAFSP-DGKTLASTH-GDHTVKIID  135 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~--~L------------~gH~~sVtsVaFSp-DG~~LASgs-~DGtVrVWD  135 (767)
                      +.-+++..++..+++...++.|++|+....  .+            .++......|+|+| +++++++.+ .++.|++||
T Consensus        93 p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~  172 (329)
T 3fvz_A           93 PHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS  172 (329)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC
T ss_pred             ceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc
Confidence            556777778888888888999999998654  11            24455789999999 788888876 689999999


Q ss_pred             CCCCeEEEEEccCC----------CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec---CCCCeEEEEEcCC
Q 004217          136 CQTGSCLKVLHGHR----------RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHAS  202 (767)
Q Consensus       136 l~tg~~l~~L~gH~----------~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~---h~~~VtsVafSPd  202 (767)
                       .+++.+..+....          ..+..++++|++++++++...++.|++||..+++.+..+.   +...+..++|+| 
T Consensus       173 -~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-  250 (329)
T 3fvz_A          173 -PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-  250 (329)
T ss_dssp             -TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-
T ss_pred             -CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-
Confidence             5677777774322          3488999999338888998899999999999898888763   556788999999 


Q ss_pred             CCEEEEEE-------C-CcEEEEEcCCCccccCCeEE---ecCCCCeEEEEEccCCCeEEEEE
Q 004217          203 GELLAVAS-------G-HKLYIWRYNMREETSSPRIV---LRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       203 G~~LAsgS-------d-d~V~VWDl~t~~~~~~~~~l---~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      +..++..+       . ..|++||+.+++.+.   .+   ..+...+..|+|+|+|. |+++.
T Consensus       251 g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~---~~~~~~~~~~~p~~ia~~~dG~-lyvad  309 (329)
T 3fvz_A          251 GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIID---VFKPVRKHFDMPHDIVASEDGT-VYIGD  309 (329)
T ss_dssp             TEEEEEECCCCTTCSCCCCEEEEETTTCCEEE---EECCSSSCCSSEEEEEECTTSE-EEEEE
T ss_pred             CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEE---EEcCCCCccCCeeEEEECCCCC-EEEEE
Confidence            44433332       1 249999999887654   33   35667799999999995 55544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.09  E-value=1.5e-08  Score=106.09  Aligned_cols=166  Identities=12%  Similarity=0.027  Sum_probs=127.5

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC----CCCCC-CCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCC-CCc
Q 004217           79 DARRGLASWVEAESLHHLRPKYCP----LSPPP-RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-RTP  152 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~~----L~gH~-~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~-~~V  152 (767)
                      ..++.|++++.++.|.+||.++++    +..+. ..+.++.++|+|++|+  +.++.|+.||. +|+.+..+..+. ..+
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            457888899999999999997773    33444 4689999999999988  45778999998 899999988653 468


Q ss_pred             EEEEEccCCCcEEEEEeC-CCeEEEEECCCCeEEEeecCC-------CCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCc
Q 004217          153 WVVRFHPLNPTIIASGSL-DHEVRLWNASTAECIGSRDFY-------RPIASIAFHASGELLAVASGHK-LYIWRYNMRE  223 (767)
Q Consensus       153 ~sLafsP~dg~lLaSgS~-DGtVrIWDl~tg~~i~~l~h~-------~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~  223 (767)
                      .++.+.+ +++++++.+. ++.|..+|. +++.+..+...       .....+++.++|++|++...++ |.+||.. ++
T Consensus        80 ~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~  156 (276)
T 3no2_A           80 QTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ  156 (276)
T ss_dssp             EEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             cccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence            8899999 8999999887 788888886 67776664311       2345567899999999887554 9999988 77


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       224 ~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      .+.   .+.. ...+.++.+.++|+.+++..
T Consensus       157 ~~w---~~~~-~~~~~~~~~~~~g~~~v~~~  183 (276)
T 3no2_A          157 LLN---SVKL-SGTPFSSAFLDNGDCLVACG  183 (276)
T ss_dssp             EEE---EEEC-SSCCCEEEECTTSCEEEECB
T ss_pred             EEE---EEEC-CCCccceeEcCCCCEEEEeC
Confidence            655   2322 34567788899999666544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.08  E-value=2.2e-08  Score=115.89  Aligned_cols=171  Identities=12%  Similarity=0.047  Sum_probs=120.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECC--CCeEEEEEccCCCCcEEE
Q 004217           81 RRGLASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ--TGSCLKVLHGHRRTPWVV  155 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t~~L~---gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~--tg~~l~~L~gH~~~V~sL  155 (767)
                      +..+++...++.|.++|..++++.   .....+..+.|||||++|++++.|+.|.+||+.  +++.+..+... .....+
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~i  245 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSI  245 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEE
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCcee
Confidence            345566778899999999887432   233467899999999999999999999999996  88888877643 346789


Q ss_pred             EEc----cCCCcEEEEE-eCCCeEEEEECCCCeEEEeecCC---------------------------------------
Q 004217          156 RFH----PLNPTIIASG-SLDHEVRLWNASTAECIGSRDFY---------------------------------------  191 (767)
Q Consensus       156 afs----P~dg~lLaSg-S~DGtVrIWDl~tg~~i~~l~h~---------------------------------------  191 (767)
                      +|+    | ++++++.+ ..+++|.++|..+.+.+..+...                                       
T Consensus       246 a~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~  324 (567)
T 1qks_A          246 ETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  324 (567)
T ss_dssp             EECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             EEccccCC-CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence            999    7 66665555 45699999999888776653210                                       


Q ss_pred             -----------------CCeEEEEEcCCCCEEEEEE--CCcEEEEEcCCCccccCCeE--EecCCCCeEEEEEccCCCeE
Q 004217          192 -----------------RPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSSPRI--VLRTRRSLRAVHFHPHAAPL  250 (767)
Q Consensus       192 -----------------~~VtsVafSPdG~~LAsgS--dd~V~VWDl~t~~~~~~~~~--l~~h~~~VtsVaFSPDG~~L  250 (767)
                                       .....+.|+|+|++|+++.  +++|.++|+.+++.......  ...|...-..+ ++|++..+
T Consensus       325 vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v  403 (567)
T 1qks_A          325 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPV  403 (567)
T ss_dssp             EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEE
T ss_pred             EecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcE
Confidence                             0122567999999988877  46699999999876441110  11243222222 68886666


Q ss_pred             EEEE
Q 004217          251 LLTA  254 (767)
Q Consensus       251 laSg  254 (767)
                      .+++
T Consensus       404 ~~t~  407 (567)
T 1qks_A          404 WATS  407 (567)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            6554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.02  E-value=7.1e-09  Score=112.20  Aligned_cols=96  Identities=10%  Similarity=0.096  Sum_probs=74.2

Q ss_pred             CCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCCeEEEEe----------CCCeEEEEECCCCeEEEEEccC------
Q 004217           89 EAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTH----------GDHTVKIIDCQTGSCLKVLHGH------  148 (767)
Q Consensus        89 ~DgsIrlWd~~t~~L----~gH~~sVtsVaFSpDG~~LASgs----------~DGtVrVWDl~tg~~l~~L~gH------  148 (767)
                      .|+.|.+||..++++    ..+..+  .++|+|||++|+++.          .+++|.+||..+++.+..+...      
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            367899999877643    233333  899999999999886          3678999999999988877532      


Q ss_pred             CCCcEEEEEccCCCcEEEEEeC--CCeEEEEECCCCeEEEe
Q 004217          149 RRTPWVVRFHPLNPTIIASGSL--DHEVRLWNASTAECIGS  187 (767)
Q Consensus       149 ~~~V~sLafsP~dg~lLaSgS~--DGtVrIWDl~tg~~i~~  187 (767)
                      ......++|+| ++++|+++..  +++|.+||+.+++.+..
T Consensus       107 g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A          107 LNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             CCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred             CCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence            34577899999 8888887763  68999999988766554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.01  E-value=2.3e-09  Score=112.21  Aligned_cols=147  Identities=12%  Similarity=0.101  Sum_probs=110.4

Q ss_pred             CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCC----CeEEEEE
Q 004217          103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD----HEVRLWN  178 (767)
Q Consensus       103 L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~D----GtVrIWD  178 (767)
                      +..+...+.+++|+++|++++++..++.|.+||.++++....+..+...+.+++|+| +++++++...+    +.|.+||
T Consensus        40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d  118 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAAT  118 (333)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEEC
T ss_pred             EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEe
Confidence            445666789999999999888888899999999998876655545677899999999 78888887766    7899999


Q ss_pred             CCCCeEEEee---cCCCCeEEEEEcCCCCEEEEEEC-------CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCC
Q 004217          179 ASTAECIGSR---DFYRPIASIAFHASGELLAVASG-------HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA  248 (767)
Q Consensus       179 l~tg~~i~~l---~h~~~VtsVafSPdG~~LAsgSd-------d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~  248 (767)
                      ..+++....+   .....+..++++|+|+++++...       ++|..||..+++..    .+..+...+..++|+|||+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          119 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT----PIIQNISVANGIALSTDEK  194 (333)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE----EEEEEESSEEEEEECTTSS
T ss_pred             CCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE----EeecCCCcccceEECCCCC
Confidence            9887765333   24467899999999998877653       23666665544322    2223334678999999998


Q ss_pred             eEEEEE
Q 004217          249 PLLLTA  254 (767)
Q Consensus       249 ~LlaSg  254 (767)
                      +++++.
T Consensus       195 ~l~v~~  200 (333)
T 2dg1_A          195 VLWVTE  200 (333)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            766654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.00  E-value=8.4e-09  Score=106.65  Aligned_cols=180  Identities=17%  Similarity=0.123  Sum_probs=125.9

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCC-------C-CCCCeEEEEECCCCCeEEEE----e-------------
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPLS-------P-PPRSTIAAAFSPDGKTLAST----H-------------  126 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~-------g-H~~sVtsVaFSpDG~~LASg----s-------------  126 (767)
                      ...++...++..+++...++.|.+||..++++.       + ....+.+++++++|+++++.    .             
T Consensus        71 ~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~  150 (296)
T 3e5z_A           71 QNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMEL  150 (296)
T ss_dssp             EEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCS
T ss_pred             cceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccC
Confidence            555667677777766666789999999766421       1 12356789999999988873    2             


Q ss_pred             CCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC-CCeE---EEee-cCCCCeEEEEEcC
Q 004217          127 GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TAEC---IGSR-DFYRPIASIAFHA  201 (767)
Q Consensus       127 ~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~-tg~~---i~~l-~h~~~VtsVafSP  201 (767)
                      ..+.|..+|.. ++ +..+..+...+..++|+| +++.+++.+.++.|.+||+. +++.   ...+ .....+..+++++
T Consensus       151 ~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~  227 (296)
T 3e5z_A          151 PGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDA  227 (296)
T ss_dssp             SSCEEEEECTT-SC-EEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBT
T ss_pred             CCcEEEEECCC-CC-EEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECC
Confidence            13456666655 44 444556667789999999 88877888888999999997 5554   2223 2344567899999


Q ss_pred             CCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEE-ccCCCeEEEEEe--eCCcC
Q 004217          202 SGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHF-HPHAAPLLLTAE--VNDLD  260 (767)
Q Consensus       202 dG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaF-SPDG~~LlaSgs--vwdl~  260 (767)
                      +|+++++. +++|.+||.. ++...   .+..+.. +.+++| +|+++.|++++.  +|.++
T Consensus       228 ~G~l~v~~-~~~v~~~~~~-g~~~~---~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~  283 (296)
T 3e5z_A          228 GGLIWASA-GDGVHVLTPD-GDELG---RVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIE  283 (296)
T ss_dssp             TSCEEEEE-TTEEEEECTT-SCEEE---EEECSSC-CCEEEEESTTSCEEEEEETTEEEEEE
T ss_pred             CCCEEEEc-CCeEEEECCC-CCEEE---EEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEE
Confidence            99977766 7779999986 44322   3444555 899999 589987777654  55544

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.96  E-value=1.3e-08  Score=106.79  Aligned_cols=168  Identities=10%  Similarity=0.042  Sum_probs=112.1

Q ss_pred             eEEEEEEcCCCEEEEEeCC---C--eEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEEeCC---------------
Q 004217           72 QIFEAGRDARRGLASWVEA---E--SLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGD---------------  128 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~D---g--sIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASgs~D---------------  128 (767)
                      .....++.+++.|+..+.+   +  .|.+|++.+++   +..+.. +..++|+|||+.|+.++.+               
T Consensus        61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~  139 (347)
T 2gop_A           61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPA  139 (347)
T ss_dssp             CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCC
T ss_pred             CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccce
Confidence            3446677888888877643   3  37777877653   333344 9999999999999888743               


Q ss_pred             ------------CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCC-------eEEEEECCCCeEEEeec
Q 004217          129 ------------HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH-------EVRLWNASTAECIGSRD  189 (767)
Q Consensus       129 ------------GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DG-------tVrIWDl~tg~~i~~l~  189 (767)
                                  ..|++||+.+++.+..+.. . .+..+.|+| ++ +++++..+.       ...||.+.+++......
T Consensus       140 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~  215 (347)
T 2gop_A          140 WFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFE  215 (347)
T ss_dssp             C---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEE
T ss_pred             eecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCceEEecc
Confidence                        5799999999887555655 4 788999999 77 777776542       33444443665544444


Q ss_pred             CCCCeEEEEEcCCCCEEEEEEC-C--------cEEEEEcCCCccccCCeEEecCCCCeEE-EEEccCCCeEEEEE
Q 004217          190 FYRPIASIAFHASGELLAVASG-H--------KLYIWRYNMREETSSPRIVLRTRRSLRA-VHFHPHAAPLLLTA  254 (767)
Q Consensus       190 h~~~VtsVafSPdG~~LAsgSd-d--------~V~VWDl~t~~~~~~~~~l~~h~~~Vts-VaFSPDG~~LlaSg  254 (767)
                      + ..+..+  +|+|++|+..+. +        .|++||  +++...   ....+...+.. +.|+ |+ .++++.
T Consensus       216 ~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~---l~~~~~~~~~~~~~~s-dg-~~~~~~  280 (347)
T 2gop_A          216 K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG---ILDEVDRGVGQAKIKD-GK-VYFTLF  280 (347)
T ss_dssp             E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE---SSTTCCSEEEEEEEET-TE-EEEEEE
T ss_pred             C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEe---ccccCCcccCCccEEc-Cc-EEEEEe
Confidence            4 445444  999998877763 2        378887  433221   22345677886 9999 88 444433

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.96  E-value=5.1e-08  Score=98.41  Aligned_cols=176  Identities=10%  Similarity=-0.005  Sum_probs=123.8

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~----gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ...++...++..+++.. ++.|.+|+.....+.    .....+.+++++++|+++++...++.|.+||..+.........
T Consensus        69 p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~  147 (270)
T 1rwi_B           69 PQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT  147 (270)
T ss_dssp             CCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC
T ss_pred             cceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc
Confidence            34455655666444444 889999998765322    2335789999999999888777788999998765544332233


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCccc
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREET  225 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~  225 (767)
                      ....+..+++++ +++++++...++.|.+||.......... .....+..++++++|+++++... ++|.+||.......
T Consensus       148 ~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~  226 (270)
T 1rwi_B          148 GLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST  226 (270)
T ss_dssp             SCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE
T ss_pred             cCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce
Confidence            334678899999 7888888878899999999877655432 23367899999999976666554 45999998765432


Q ss_pred             cCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217          226 SSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       226 ~~~~~l~~h~~~VtsVaFSPDG~~Lla  252 (767)
                      .   ....+...+.+++++++|+.+++
T Consensus       227 ~---~~~~~~~~p~~i~~~~~g~l~v~  250 (270)
T 1rwi_B          227 V---LPFTGLNTPLAVAVDSDRTVYVA  250 (270)
T ss_dssp             E---CCCCSCSCEEEEEECTTCCEEEE
T ss_pred             e---eccCCCCCceeEEECCCCCEEEE
Confidence            1   11223467899999999984443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.90  E-value=8.1e-08  Score=102.08  Aligned_cols=176  Identities=10%  Similarity=0.014  Sum_probs=125.5

Q ss_pred             eEEEEEEcCCCEEEEEe-CCCeEEEEeCCCCCCC-----CC----CCCeEEEEECCCCCeEEEEe--CCCeEEEEECCCC
Q 004217           72 QIFEAGRDARRGLASWV-EAESLHHLRPKYCPLS-----PP----PRSTIAAAFSPDGKTLASTH--GDHTVKIIDCQTG  139 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs-~DgsIrlWd~~t~~L~-----gH----~~sVtsVaFSpDG~~LASgs--~DGtVrVWDl~tg  139 (767)
                      +..+++..++ .++... .++.|.+||..+.++.     +.    ......+++  +++.|+.+.  .++.|.+||.+++
T Consensus        86 p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~  162 (328)
T 3dsm_A           86 PRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETD  162 (328)
T ss_dssp             EEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTT
T ss_pred             CcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCC
Confidence            5556665566 455554 7899999999886422     11    114556777  455555554  4889999999999


Q ss_pred             eEEEEEccCCCCcEEEEEccCCCcEEEEEeCC----------CeEEEEECCCCeEEEeecC--CCCeEEEEEcCCCCEEE
Q 004217          140 SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD----------HEVRLWNASTAECIGSRDF--YRPIASIAFHASGELLA  207 (767)
Q Consensus       140 ~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~D----------GtVrIWDl~tg~~i~~l~h--~~~VtsVafSPdG~~LA  207 (767)
                      +.+..+... .....+.++| ++++++++..+          +.|.+||..+++....+..  ......++|+|++++|.
T Consensus       163 ~~~~~i~~g-~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~ly  240 (328)
T 3dsm_A          163 KVVDELTIG-IQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLY  240 (328)
T ss_dssp             EEEEEEECS-SCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEE
T ss_pred             eEEEEEEcC-CCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEE
Confidence            988877643 3467889999 88888777655          7999999999988777653  34789999999999888


Q ss_pred             EEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          208 VASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       208 sgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      ++.. .|.+||..+++... ......+......++++|++..+.++.
T Consensus       241 v~~~-~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          241 WINN-DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             EESS-SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             EEcc-EEEEEECCCCceee-eeeecCCCCceEEEEEcCCCCeEEEEc
Confidence            8765 89999998876532 111122246789999999655566654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.89  E-value=1.4e-07  Score=110.43  Aligned_cols=176  Identities=12%  Similarity=-0.049  Sum_probs=125.4

Q ss_pred             EEEEcCCCEEEEEeCCCe----------------EEEEeCCCCC----C----CCCCCCeEEEEECCCCCeEEEEeC---
Q 004217           75 EAGRDARRGLASWVEAES----------------LHHLRPKYCP----L----SPPPRSTIAAAFSPDGKTLASTHG---  127 (767)
Q Consensus        75 vA~sd~g~~LaSgs~Dgs----------------IrlWd~~t~~----L----~gH~~sVtsVaFSpDG~~LASgs~---  127 (767)
                      ++++.+++.|+..+.++.                |++|++.+++    +    ..|...+..+.|||||++|+..+.   
T Consensus       176 ~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  255 (710)
T 2xdw_A          176 MAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGC  255 (710)
T ss_dssp             EEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSS
T ss_pred             EEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccC
Confidence            566778888888877765                9999998753    2    234566889999999999988765   


Q ss_pred             --CCeEEEEECCC------Ce-EEEEEccCCCCcEEEEEccCCCcEEEEEeC-C---CeEEEEECCCCeE---EEeecCC
Q 004217          128 --DHTVKIIDCQT------GS-CLKVLHGHRRTPWVVRFHPLNPTIIASGSL-D---HEVRLWNASTAEC---IGSRDFY  191 (767)
Q Consensus       128 --DGtVrVWDl~t------g~-~l~~L~gH~~~V~sLafsP~dg~lLaSgS~-D---GtVrIWDl~tg~~---i~~l~h~  191 (767)
                        +..|++||+.+      +. ....+..+...+.. .|+| +++.|+..+. +   ..|.+||+.+++.   ...+.+.
T Consensus       256 ~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~  333 (710)
T 2xdw_A          256 DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH  333 (710)
T ss_dssp             SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred             CCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC
Confidence              56899999986      53 45667677776655 4888 5665554443 3   3699999988742   3334443


Q ss_pred             C--CeEEEEEcCCCCEEEEEECCc---EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          192 R--PIASIAFHASGELLAVASGHK---LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       192 ~--~VtsVafSPdG~~LAsgSdd~---V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .  .+..++|++++.++++...++   |++||+.+++...   .+..+...+..+.++|+++.++.+.+
T Consensus       334 ~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~---~l~~~~~~v~~~~~s~d~~~l~~~~s  399 (710)
T 2xdw_A          334 EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLK---IFPLEVGSVVGYSGQKKDTEIFYQFT  399 (710)
T ss_dssp             SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEE---EECCCSSEEEEEECCTTCSEEEEEEE
T ss_pred             CCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEE---ecCCCCceEEEEecCCCCCEEEEEEe
Confidence            3  678899997777777777553   7888886665433   44456778899999999987776543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.85  E-value=1.2e-07  Score=95.54  Aligned_cols=175  Identities=9%  Similarity=-0.020  Sum_probs=119.5

Q ss_pred             eEEEEEEcCCCEEE-EEeCCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217           72 QIFEAGRDARRGLA-SWVEAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        72 ~~~vA~sd~g~~La-Sgs~DgsIrlWd~~t~~L----~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~  146 (767)
                      +..++...++...+ +...++.|..|+..+...    ..+...+.+++++++|+++++.. ++.|.+||..+.... .+.
T Consensus        26 p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~  103 (270)
T 1rwi_B           26 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLP  103 (270)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECC
T ss_pred             ccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eee
Confidence            55566666666555 436778999998765421    23345688999999999666655 889999998765533 332


Q ss_pred             -cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCc
Q 004217          147 -GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG-HKLYIWRYNMRE  223 (767)
Q Consensus       147 -gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~  223 (767)
                       .....+..+++++ +++++++...++.|.+||..+....... .....+..++++++|+++++... +.|.+||.....
T Consensus       104 ~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~  182 (270)
T 1rwi_B          104 FDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  182 (270)
T ss_dssp             CCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             cCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence             2335789999999 8888888888899999987665443322 23346788999999996666553 569999987665


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       224 ~~~~~~~l~~h~~~VtsVaFSPDG~~Lla  252 (767)
                      ...   ....+...+..++++++|..+++
T Consensus       183 ~~~---~~~~~~~~p~~i~~d~~g~l~v~  208 (270)
T 1rwi_B          183 QVV---LPFTDITAPWGIAVDEAGTVYVT  208 (270)
T ss_dssp             EEE---CCCSSCCSEEEEEECTTCCEEEE
T ss_pred             eEe---ecccCCCCceEEEECCCCCEEEE
Confidence            322   11223367899999999964443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.79  E-value=1.3e-06  Score=89.85  Aligned_cols=177  Identities=9%  Similarity=0.012  Sum_probs=116.2

Q ss_pred             EEEEEEcCCCEEEE-------EeCCCeEEEEeCCCCCCC--------CCCCCeEEEEECCC-CCeEEEEeCCCeEEEEEC
Q 004217           73 IFEAGRDARRGLAS-------WVEAESLHHLRPKYCPLS--------PPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDC  136 (767)
Q Consensus        73 ~~vA~sd~g~~LaS-------gs~DgsIrlWd~~t~~L~--------gH~~sVtsVaFSpD-G~~LASgs~DGtVrVWDl  136 (767)
                      ..+++..++..+++       ...++.|.+|+..++++.        ++...+.+++++++ |+++++.. +..|.+||.
T Consensus        21 ~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~   99 (314)
T 1pjx_A           21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQT   99 (314)
T ss_dssp             EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEET
T ss_pred             cCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEeC
Confidence            34455556665555       467888999997766421        24567999999999 76555544 447999999


Q ss_pred             CCCeEEEE-Ecc----CCCCcEEEEEccCCCcEEEEEeCC---------------CeEEEEECCCCeEEEeecCCCCeEE
Q 004217          137 QTGSCLKV-LHG----HRRTPWVVRFHPLNPTIIASGSLD---------------HEVRLWNASTAECIGSRDFYRPIAS  196 (767)
Q Consensus       137 ~tg~~l~~-L~g----H~~~V~sLafsP~dg~lLaSgS~D---------------GtVrIWDl~tg~~i~~l~h~~~Vts  196 (767)
                      + ++.... ...    ....+..+++++ +++++++...+               +.|..||.. ++.............
T Consensus       100 ~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~  176 (314)
T 1pjx_A          100 D-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNG  176 (314)
T ss_dssp             T-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEE
T ss_pred             C-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcce
Confidence            8 765433 221    123588999999 78888877665               577788776 555444444455788


Q ss_pred             EEEc----CCCCEEEEEE--CCcEEEEEcC-CCcccc--CCeEEecCC-CCeEEEEEccCCCeEEEE
Q 004217          197 IAFH----ASGELLAVAS--GHKLYIWRYN-MREETS--SPRIVLRTR-RSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       197 VafS----PdG~~LAsgS--dd~V~VWDl~-t~~~~~--~~~~l~~h~-~~VtsVaFSPDG~~LlaS  253 (767)
                      ++|+    |+|+.|.++.  +++|.+||+. .++...  ....+..+. ..+..++++++|+.+++.
T Consensus       177 i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~  243 (314)
T 1pjx_A          177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred             EEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEE
Confidence            9999    9997666664  3559999986 333111  001112222 567899999999855554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.79  E-value=3.6e-07  Score=107.82  Aligned_cols=177  Identities=12%  Similarity=0.016  Sum_probs=116.4

Q ss_pred             eEEEEEEcCCCEEEEEeCC-----CeEEEEeCCCCCCC-CCCCC--eEEEEECCCCCeEEEEeCCCe-------------
Q 004217           72 QIFEAGRDARRGLASWVEA-----ESLHHLRPKYCPLS-PPPRS--TIAAAFSPDGKTLASTHGDHT-------------  130 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~D-----gsIrlWd~~t~~L~-gH~~s--VtsVaFSpDG~~LASgs~DGt-------------  130 (767)
                      ....+++.+++.|+....+     ..|++||+.+++.. .+...  +..++|+|| +.|+.++.|+.             
T Consensus       165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~  243 (741)
T 1yr2_A          165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQ  243 (741)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCC
T ss_pred             EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCC
Confidence            4456677888888876543     46999999987532 11122  257899999 99998887654             


Q ss_pred             -EEEEECCCCeE--EEEEc--cCCCCcEEEEEccCCCcEEEEEeCCC-----eEEEEECCCC--e-EEEeecCCCCeEEE
Q 004217          131 -VKIIDCQTGSC--LKVLH--GHRRTPWVVRFHPLNPTIIASGSLDH-----EVRLWNASTA--E-CIGSRDFYRPIASI  197 (767)
Q Consensus       131 -VrVWDl~tg~~--l~~L~--gH~~~V~sLafsP~dg~lLaSgS~DG-----tVrIWDl~tg--~-~i~~l~h~~~VtsV  197 (767)
                       |++|++.++..  ...+.  .+...+..+.|+| ++++|+..+.++     .|++||+.++  + ......+...+...
T Consensus       244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~  322 (741)
T 1yr2_A          244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF  322 (741)
T ss_dssp             EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE
T ss_pred             EEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE
Confidence             99999987652  22333  3334588999999 888777766543     8999999887  4 33434444445544


Q ss_pred             EEcCCCCEEEEEECC-----cEEEEEcCCCc-cccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          198 AFHASGELLAVASGH-----KLYIWRYNMRE-ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       198 afSPdG~~LAsgSdd-----~V~VWDl~t~~-~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      . +|+|+.|+..++.     +|.+||+.+.. ...  ..+..+...+..+.|+  +..++++..
T Consensus       323 ~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~--~l~~~~~~~l~~~~~~--~~~lv~~~~  381 (741)
T 1yr2_A          323 V-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFD--TVVPESKDNLESVGIA--GNRLFASYI  381 (741)
T ss_dssp             E-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEE--EEECCCSSEEEEEEEE--BTEEEEEEE
T ss_pred             E-eccCCEEEEEECCCCCCCEEEEEeCCCCccccE--EEecCCCCeEEEEEEE--CCEEEEEEE
Confidence            3 4899988877742     29999988752 211  2333344556677777  444555543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.79  E-value=2.7e-07  Score=96.38  Aligned_cols=171  Identities=13%  Similarity=0.063  Sum_probs=129.0

Q ss_pred             EEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCC-CCCeEEEEECCCCCeEEEEeC-CCeEEEEECCCCeEEEEEcc
Q 004217           74 FEAGRDARRGLASWVEAESLHHLRPKYCP----LSPP-PRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        74 ~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH-~~sVtsVaFSpDG~~LASgs~-DGtVrVWDl~tg~~l~~L~g  147 (767)
                      .++...++..++  +.++.|..||. +++    +..+ ...+.++.+.+||++|++.+. ++.|..+|. +|+.+..+..
T Consensus        41 ~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~  116 (276)
T 3no2_A           41 SVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEF  116 (276)
T ss_dssp             EEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEE
T ss_pred             CeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEec
Confidence            345566777777  45778888888 442    2333 346889999999999999887 788888885 6887776642


Q ss_pred             ------CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcC
Q 004217          148 ------HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYN  220 (767)
Q Consensus       148 ------H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~  220 (767)
                            +......+++.+ +++++++...++.|..||.. ++.+..+.....+.++.+.++|++++++.++. |..+|..
T Consensus       117 ~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~  194 (276)
T 3no2_A          117 ETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLE  194 (276)
T ss_dssp             CCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred             cCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence                  112345567888 89999999999999999998 99999887666777888999999998888664 9999999


Q ss_pred             CCccccCCeEEecC------CCCeEEEEEccCCCeEEEE
Q 004217          221 MREETSSPRIVLRT------RRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       221 t~~~~~~~~~l~~h------~~~VtsVaFSPDG~~LlaS  253 (767)
                      +++.+.   .+..+      -..+..+...++|..+++.
T Consensus       195 tG~~~w---~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          195 SNRIVR---RVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             TCCEEE---EEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             CCcEEE---EecCCCCCCccccccccceEcCCCCEEEEe
Confidence            888765   23221      2347888899999865554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.78  E-value=1.3e-06  Score=91.09  Aligned_cols=170  Identities=8%  Similarity=0.029  Sum_probs=111.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCC--CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC----CCCcE
Q 004217           80 ARRGLASWVEAESLHHLRPKYCPL--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH----RRTPW  153 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~~L--~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH----~~~V~  153 (767)
                      ++..+++...++.|..||..++++  ......+.+++|+++|+++++ . +..|.+||.++++........    ...+.
T Consensus        24 ~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~  101 (297)
T 3g4e_A           24 SNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFN  101 (297)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCC
Confidence            456666777788999999887642  234567999999999996554 3 568999999988754333221    23478


Q ss_pred             EEEEccCCCcEEEEEeCC---------CeEEEEECCC-CeEEEeecCCCCeEEEEEcCCCCEEEEEE--CCcEEEEEcC-
Q 004217          154 VVRFHPLNPTIIASGSLD---------HEVRLWNAST-AECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYN-  220 (767)
Q Consensus       154 sLafsP~dg~lLaSgS~D---------GtVrIWDl~t-g~~i~~l~h~~~VtsVafSPdG~~LAsgS--dd~V~VWDl~-  220 (767)
                      .+.++| +++++++...+         ..-.||.+.. ++...........+.++|+|+++.|+.+.  .++|.+||+. 
T Consensus       102 di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~  180 (297)
T 3g4e_A          102 DGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDL  180 (297)
T ss_dssp             EEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECT
T ss_pred             CEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccC
Confidence            899999 78877765322         2345555442 44433334445568899999999776665  3459999984 


Q ss_pred             -CCccccCCeEE---ecCCCCeEEEEEccCCCeEEEE
Q 004217          221 -MREETSSPRIV---LRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       221 -t~~~~~~~~~l---~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                       ++.... ...+   ..+......++++++|+.+++.
T Consensus       181 ~~G~~~~-~~~~~~~~~~~~~p~g~~~d~~G~lwva~  216 (297)
T 3g4e_A          181 QTGQISN-RRSVYKLEKEEQIPDGMCIDAEGKLWVAC  216 (297)
T ss_dssp             TTCCEEE-EEEEEECCGGGCEEEEEEEBTTSCEEEEE
T ss_pred             CCCcccC-cEEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence             443211 1111   2234567899999999855443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.73  E-value=7.5e-07  Score=91.63  Aligned_cols=176  Identities=10%  Similarity=0.109  Sum_probs=118.3

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCC----CC-----CCCCeEEEEECCCCCeEEEEeCC--------------
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPL----SP-----PPRSTIAAAFSPDGKTLASTHGD--------------  128 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L----~g-----H~~sVtsVaFSpDG~~LASgs~D--------------  128 (767)
                      ...++...++..|+.+...+.|.+|+.+ +++    ..     +...+.+++++++|+++++...+              
T Consensus        73 ~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~  151 (314)
T 1pjx_A           73 PAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK  151 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred             CceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCC
Confidence            4445555552455555555578889987 532    11     12358899999999988877655              


Q ss_pred             -CeEEEEECCCCeEEEEEccCCCCcEEEEEc----cCCCc-EEEEEeCCCeEEEEECC-CCeE-----EEeec-CC-CCe
Q 004217          129 -HTVKIIDCQTGSCLKVLHGHRRTPWVVRFH----PLNPT-IIASGSLDHEVRLWNAS-TAEC-----IGSRD-FY-RPI  194 (767)
Q Consensus       129 -GtVrVWDl~tg~~l~~L~gH~~~V~sLafs----P~dg~-lLaSgS~DGtVrIWDl~-tg~~-----i~~l~-h~-~~V  194 (767)
                       +.|..||.. ++... +..+......++|+    | +++ ++++...++.|.+||+. +++.     ...+. +. ..+
T Consensus       152 ~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p  228 (314)
T 1pjx_A          152 FGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA  228 (314)
T ss_dssp             CEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE
T ss_pred             CCeEEEECCC-CCEEE-eccCCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCC
Confidence             567778766 55433 33334456889999    9 665 45555678999999986 4542     12222 22 557


Q ss_pred             EEEEEcCCCCEEEEEE-CCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          195 ASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       195 tsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      ..++++++|+++++.. +++|.+||..+++...   .+..+...+.+++|+|+|++|+++.
T Consensus       229 ~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~i~~~~dg~~l~v~~  286 (314)
T 1pjx_A          229 DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKM---RIRCPFEKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSE---EEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             CceEECCCCCEEEEEcCCCEEEEEcCCCCcEeE---EEeCCCCCceeEEECCCCCEEEEEe
Confidence            8899999999877775 4569999987665433   3444557899999999999666554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.73  E-value=3.4e-06  Score=85.53  Aligned_cols=174  Identities=10%  Similarity=0.027  Sum_probs=123.4

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCC-----CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPL-----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L-----~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~  146 (767)
                      +..++...++...++...++.|..||.. +++     ..+...+.+++++++|+++++...++.|..||.. ++. ..+.
T Consensus        17 ~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~   93 (299)
T 2z2n_A           17 PYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYT   93 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEE
T ss_pred             ccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEe
Confidence            4455665666655555457889999987 432     2345679999999999988887778899999986 442 3332


Q ss_pred             --cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee--cCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCC
Q 004217          147 --GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFHASGELLAVASG-HKLYIWRYNM  221 (767)
Q Consensus       147 --gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l--~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t  221 (767)
                        .....+..+.+.+ +++++++...++.|.+||. +++.....  .....+..++++++|+++++... +.|.+||. +
T Consensus        94 ~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~  170 (299)
T 2z2n_A           94 LPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S  170 (299)
T ss_dssp             CSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T
T ss_pred             CCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C
Confidence              3456789999999 8888888878899999998 55544332  23467899999999987776654 55999998 5


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       222 ~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      ++...  .........+..++++++|+.+++.
T Consensus       171 g~~~~--~~~~~~~~~~~~i~~~~~g~l~v~~  200 (299)
T 2z2n_A          171 GDITE--FKIPTPASGPVGITKGNDDALWFVE  200 (299)
T ss_dssp             CCEEE--EECSSTTCCEEEEEECTTSSEEEEE
T ss_pred             CcEEE--eeCCCCCCcceeEEECCCCCEEEEc
Confidence            44322  1122345568899999999855443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.71  E-value=7e-07  Score=104.81  Aligned_cols=193  Identities=10%  Similarity=0.009  Sum_probs=124.2

Q ss_pred             eecccccceecCCcceEEEEEEcCCCEEEE-----EeCCCeEEEEeCCCCCC-CCCCCCe--EEEEECCCCCeEEEEeCC
Q 004217           57 RLLGETARKCSGSFSQIFEAGRDARRGLAS-----WVEAESLHHLRPKYCPL-SPPPRST--IAAAFSPDGKTLASTHGD  128 (767)
Q Consensus        57 ~~wd~~~~~~~~s~s~~~vA~sd~g~~LaS-----gs~DgsIrlWd~~t~~L-~gH~~sV--tsVaFSpDG~~LASgs~D  128 (767)
                      .++|.+...-...+....++++.+++.|+-     |++...|++||+.+++. ..+...+  ..++|+ ||+.|+.++.+
T Consensus       116 vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~  194 (693)
T 3iuj_A          116 VFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYD  194 (693)
T ss_dssp             EEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESS
T ss_pred             EEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEec
Confidence            344444332222333445567888888773     33345799999998853 2232233  578999 99999999887


Q ss_pred             C-------------eEEEEECCCCeE--EEEE--cc-CCCCcEEEEEccCCCcEEEE-EeC---CCeEEEEECCCC--eE
Q 004217          129 H-------------TVKIIDCQTGSC--LKVL--HG-HRRTPWVVRFHPLNPTIIAS-GSL---DHEVRLWNASTA--EC  184 (767)
Q Consensus       129 G-------------tVrVWDl~tg~~--l~~L--~g-H~~~V~sLafsP~dg~lLaS-gS~---DGtVrIWDl~tg--~~  184 (767)
                      .             .|++|++.++..  ...+  .. |...+..+.|+| ++++|+. .+.   ++.|++||+.++  +.
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~  273 (693)
T 3iuj_A          195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPL  273 (693)
T ss_dssp             CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCC
T ss_pred             CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCce
Confidence            4             399999987642  2233  33 455678899999 7776644 332   358999999876  33


Q ss_pred             EEeecCCCCeEEEEEcCCCCEEEEEE-CC----cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          185 IGSRDFYRPIASIAFHASGELLAVAS-GH----KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       185 i~~l~h~~~VtsVafSPdG~~LAsgS-dd----~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .....+....... |+++|..|+..+ .+    +|.++|+.++.... ...+..|...+.  .|++++++|+.+..
T Consensus       274 ~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~--~~s~~g~~lv~~~~  345 (693)
T 3iuj_A          274 LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAH-WRDLIPERQQVL--TVHSGSGYLFAEYM  345 (693)
T ss_dssp             EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGG-CEEEECCCSSCE--EEEEETTEEEEEEE
T ss_pred             EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccc-cEEEecCCCCEE--EEEEECCEEEEEEE
Confidence            4444444555554 677777655554 22    39999998765422 234566766665  89999998887654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.71  E-value=3.4e-06  Score=85.49  Aligned_cols=175  Identities=10%  Similarity=0.022  Sum_probs=124.0

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEE-Ec
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-LH  146 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~-L~  146 (767)
                      ...++...++...++...++.|..|+....    .+......+.+++++++|+++++...++.|.+||. +++.... +.
T Consensus        59 ~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~  137 (299)
T 2z2n_A           59 VMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELP  137 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred             eeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCC
Confidence            445566566666666555788999987632    12234567999999999988888777889999998 5554332 23


Q ss_pred             cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-e-cCCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCc
Q 004217          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-R-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMRE  223 (767)
Q Consensus       147 gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l-~h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~  223 (767)
                      .+...+..+++.+ +++++++...++.|..||. +++.... . .....+..++++++|+++++.. .++|.+||. +++
T Consensus       138 ~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~  214 (299)
T 2z2n_A          138 NKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE  214 (299)
T ss_dssp             STTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred             CCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence            3456789999999 7888888777899999999 6665543 2 2345688999999999766654 455999998 554


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       224 ~~~~~~~l~~h~~~VtsVaFSPDG~~Lla  252 (767)
                      ...  .....+...+.+++++++|+.+++
T Consensus       215 ~~~--~~~~~~~~~~~~i~~~~~g~l~v~  241 (299)
T 2z2n_A          215 ITE--FKIPTPNARPHAITAGAGIDLWFT  241 (299)
T ss_dssp             EEE--EECSSTTCCEEEEEECSTTCEEEE
T ss_pred             EEE--EECCCCCCCceeEEECCCCCEEEe
Confidence            321  112234567899999999984444

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.67  E-value=2.5e-06  Score=98.62  Aligned_cols=135  Identities=10%  Similarity=0.002  Sum_probs=104.5

Q ss_pred             CCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC--CCeEEEeecCCCCe
Q 004217          117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS--TAECIGSRDFYRPI  194 (767)
Q Consensus       117 pDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~--tg~~i~~l~h~~~V  194 (767)
                      +++.++++...+++|.++|..+++.+..+.. ...+..+.|+| +++++++++.|+.|.+||+.  +++.+..+......
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P  242 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA  242 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCC
Confidence            4455667777899999999999999888864 34567899999 89999999999999999996  88888887766677


Q ss_pred             EEEEEc----CCCCEEEEEE--CCcEEEEEcCCCccccCCeEEe-------cC-CCCeEEEEEccCCCeEEEE
Q 004217          195 ASIAFH----ASGELLAVAS--GHKLYIWRYNMREETSSPRIVL-------RT-RRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       195 tsVafS----PdG~~LAsgS--dd~V~VWDl~t~~~~~~~~~l~-------~h-~~~VtsVaFSPDG~~LlaS  253 (767)
                      ..++|+    |||++++++.  .+.|.|+|..+.+.+.......       .| ...+..+.+++++..++++
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~  315 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN  315 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence            899999    7999998887  3559999998887654111100       02 2267889999988766654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.67  E-value=5.4e-06  Score=87.88  Aligned_cols=168  Identities=13%  Similarity=0.002  Sum_probs=110.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCC--CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc---C-CCCcE
Q 004217           80 ARRGLASWVEAESLHHLRPKYCPLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG---H-RRTPW  153 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~~L~--gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g---H-~~~V~  153 (767)
                      ++..+++...++.|..|+..++++.  .....+.+++|+++|+++++. .+ .|.+||.++++.......   . ...+.
T Consensus        60 ~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~  137 (326)
T 2ghs_A           60 SGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSN  137 (326)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCC
Confidence            3556666667888999998776321  234679999999999877754 44 599999988875433221   1 13578


Q ss_pred             EEEEccCCCcEEEEEeC------CCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC--CcEEEEEcC--CC-
Q 004217          154 VVRFHPLNPTIIASGSL------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRYN--MR-  222 (767)
Q Consensus       154 sLafsP~dg~lLaSgS~------DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~--t~-  222 (767)
                      .+.++| +++++++...      .+.|..+|  +++.............++|+|+|+.|+.+..  +.|.+||+.  ++ 
T Consensus       138 ~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl  214 (326)
T 2ghs_A          138 DGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGL  214 (326)
T ss_dssp             EEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCC
T ss_pred             CEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCC
Confidence            999999 7787776542      24566666  5554443333345778999999997766653  459999986  44 


Q ss_pred             ccccCCeEE---ecCCCCeEEEEEccCCCeEEEE
Q 004217          223 EETSSPRIV---LRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       223 ~~~~~~~~l---~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      .... ...+   .........++++++|..++++
T Consensus       215 ~~~~-~~~~~~~~~~~~~p~gi~~d~~G~lwva~  247 (326)
T 2ghs_A          215 PTGK-AEVFIDSTGIKGGMDGSVCDAEGHIWNAR  247 (326)
T ss_dssp             BSSC-CEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred             cccC-ceEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence            3211 1112   1234567889999999855554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.67  E-value=1.9e-06  Score=89.85  Aligned_cols=179  Identities=11%  Similarity=0.024  Sum_probs=119.6

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCC---C-----CCCCeEEEEECCCCCeEEEEeCC---------CeEEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPLS---P-----PPRSTIAAAFSPDGKTLASTHGD---------HTVKII  134 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~---g-----H~~sVtsVaFSpDG~~LASgs~D---------GtVrVW  134 (767)
                      ...++...++..++ +. +..|.+||.+++++.   .     ....+++++++++|+++++...+         ....||
T Consensus        56 ~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~  133 (297)
T 3g4e_A           56 VSSVALRQSGGYVA-TI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALY  133 (297)
T ss_dssp             EEEEEEBTTSSEEE-EE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEE
T ss_pred             eEEEEECCCCCEEE-EE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEE
Confidence            45566667777444 44 568999998776321   1     12347899999999977654321         233555


Q ss_pred             ECCC-CeEEEEEccCCCCcEEEEEccCCCc-EEEEEeCCCeEEEEEC--CCCeEE-----Eeec-CCCCeEEEEEcCCCC
Q 004217          135 DCQT-GSCLKVLHGHRRTPWVVRFHPLNPT-IIASGSLDHEVRLWNA--STAECI-----GSRD-FYRPIASIAFHASGE  204 (767)
Q Consensus       135 Dl~t-g~~l~~L~gH~~~V~sLafsP~dg~-lLaSgS~DGtVrIWDl--~tg~~i-----~~l~-h~~~VtsVafSPdG~  204 (767)
                      .+.. ++.. .+..+......++|+| +++ ++++.+.++.|.+||+  .++...     ..+. .......++++++|+
T Consensus       134 ~~d~~g~~~-~~~~~~~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~  211 (297)
T 3g4e_A          134 SLFPDHHVK-KYFDQVDISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK  211 (297)
T ss_dssp             EECTTSCEE-EEEEEESBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC
T ss_pred             EEECCCCEE-EEeeccccccceEEcC-CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC
Confidence            5443 3333 3333445568899999 665 5566677899999997  455432     1121 235678899999998


Q ss_pred             EEEEEECC-cEEEEEcCCCccccCCeEEecCCCCeEEEEEc-cCCCeEEEEEeeC
Q 004217          205 LLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFH-PHAAPLLLTAEVN  257 (767)
Q Consensus       205 ~LAsgSdd-~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFS-PDG~~LlaSgsvw  257 (767)
                      +.++...+ +|.+||..+++.+.   .+..+...+++++|. ||++.|.++....
T Consensus       212 lwva~~~~~~v~~~d~~tG~~~~---~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          212 LWVACYNGGRVIRLDPVTGKRLQ---TVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             EEEEEETTTEEEEECTTTCCEEE---EEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             EEEEEcCCCEEEEEcCCCceEEE---EEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence            77776654 49999998877644   444555789999999 8999887776533

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.66  E-value=1.5e-06  Score=90.87  Aligned_cols=173  Identities=13%  Similarity=0.049  Sum_probs=115.2

Q ss_pred             EEEEcCCC-EEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc---cC
Q 004217           75 EAGRDARR-GLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH---GH  148 (767)
Q Consensus        75 vA~sd~g~-~LaSgs~DgsIrlWd~~t~--~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~---gH  148 (767)
                      .++..+++ .+++...++.|..|+....  .+..+...+..++++++|+++++...++.|.+||.+ ++......   +.
T Consensus        50 p~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~  128 (305)
T 3dr2_A           50 PAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGK  128 (305)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTE
T ss_pred             CeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCC
Confidence            33444554 6777778889999987432  233456678999999999977766667899999986 65332221   11


Q ss_pred             -CCCcEEEEEccCCCcEEEE----EeC-------------CCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE
Q 004217          149 -RRTPWVVRFHPLNPTIIAS----GSL-------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS  210 (767)
Q Consensus       149 -~~~V~sLafsP~dg~lLaS----gS~-------------DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS  210 (767)
                       ...+..+.++| +++++++    |..             .+.|..||..+++..... .......++|+|+|+.|+++.
T Consensus       129 ~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~  206 (305)
T 3dr2_A          129 RLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQ  206 (305)
T ss_dssp             ECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEE
T ss_pred             ccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEe
Confidence             13467899999 8888886    332             256888888777655444 445678899999999777765


Q ss_pred             C-------CcEEEEEcCCCccccCCeEE-ecCCCCeEEEEEccCCCeEE
Q 004217          211 G-------HKLYIWRYNMREETSSPRIV-LRTRRSLRAVHFHPHAAPLL  251 (767)
Q Consensus       211 d-------d~V~VWDl~t~~~~~~~~~l-~~h~~~VtsVaFSPDG~~Ll  251 (767)
                      .       +.|++||+.... +.....+ .........++++++|+.++
T Consensus       207 ~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv  254 (305)
T 3dr2_A          207 TPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWS  254 (305)
T ss_dssp             CCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEE
T ss_pred             cCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEE
Confidence            4       359999987654 2111111 11234456789999998443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.63  E-value=7.4e-07  Score=104.27  Aligned_cols=175  Identities=9%  Similarity=-0.078  Sum_probs=119.5

Q ss_pred             EEEEEcCCCEEEEEeCCCe-------------EEEEeCCCCC--------CCCCCCCeEEEEECCCCCeEEEEeCCC---
Q 004217           74 FEAGRDARRGLASWVEAES-------------LHHLRPKYCP--------LSPPPRSTIAAAFSPDGKTLASTHGDH---  129 (767)
Q Consensus        74 ~vA~sd~g~~LaSgs~Dgs-------------IrlWd~~t~~--------L~gH~~sVtsVaFSpDG~~LASgs~DG---  129 (767)
                      .++++.+++.|+..+.+..             |++|++.+++        ...|...+..+.|||||++|+..+.++   
T Consensus       172 ~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~  251 (695)
T 2bkl_A          172 TPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSE  251 (695)
T ss_dssp             CCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTE
T ss_pred             ceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCc
Confidence            4667788899998888776             9999998753        224556899999999999998888766   


Q ss_pred             -eEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEe---CCCeEEEEECCCCeE---EEeecC--CCCeEEEEEc
Q 004217          130 -TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS---LDHEVRLWNASTAEC---IGSRDF--YRPIASIAFH  200 (767)
Q Consensus       130 -tVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS---~DGtVrIWDl~tg~~---i~~l~h--~~~VtsVafS  200 (767)
                       .|++||..+++ ...+..+...+....| + ++++++...   .++.|.+||+.+++.   ...+.+  ...+..++|+
T Consensus       252 ~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~  328 (695)
T 2bkl_A          252 NDVYWKRPGEKD-FRLLVKGVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV  328 (695)
T ss_dssp             EEEEEECTTCSS-CEEEEECSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred             eEEEEEcCCCCc-eEEeecCCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence             67778766665 4455556666777777 4 344666554   358899999988753   333433  4457888888


Q ss_pred             CCCCEEEEEECCc-EEEEEcC-CCccccCCeEEecC-CCCeEEEEEccCCCeEEEEEe
Q 004217          201 ASGELLAVASGHK-LYIWRYN-MREETSSPRIVLRT-RRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       201 PdG~~LAsgSdd~-V~VWDl~-t~~~~~~~~~l~~h-~~~VtsVaFSPDG~~LlaSgs  255 (767)
                       ++.++++...++ .+||.+. .++...   .+..+ ...|..+.++||++.++.+..
T Consensus       329 -~~~lv~~~~~dg~~~l~~~~~~g~~~~---~l~~~~~~~v~~~~~s~d~~~l~~~~s  382 (695)
T 2bkl_A          329 -GGHLSLEYLKDATSEVRVATLKGKPVR---TVQLPGVGAASNLMGLEDLDDAYYVFT  382 (695)
T ss_dssp             -TTEEEEEEEETTEEEEEEEETTCCEEE---ECCCSSSSEECCCBSCTTCSEEEEEEE
T ss_pred             -CCEEEEEEEECCEEEEEEEeCCCCeeE---EecCCCCeEEEEeecCCCCCEEEEEEc
Confidence             666777776544 5555443 233222   23333 567888999999987776543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.58  E-value=5.2e-06  Score=90.66  Aligned_cols=170  Identities=12%  Similarity=0.054  Sum_probs=109.2

Q ss_pred             EEEEEcCCCEEEEEe----------CCCeEEEEeCCCCCCCCC-----------CCCeEEEEECCCCCeEEEEeC--CCe
Q 004217           74 FEAGRDARRGLASWV----------EAESLHHLRPKYCPLSPP-----------PRSTIAAAFSPDGKTLASTHG--DHT  130 (767)
Q Consensus        74 ~vA~sd~g~~LaSgs----------~DgsIrlWd~~t~~L~gH-----------~~sVtsVaFSpDG~~LASgs~--DGt  130 (767)
                      -++++.+++.++...          .++.|.+||..+.+..+.           ...-..++|+|||++|+.+..  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            577778888888775          367899999987532210           123458999999999998874  578


Q ss_pred             EEEEECCCCeEEEE-EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEE-----------------------
Q 004217          131 VKIIDCQTGSCLKV-LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG-----------------------  186 (767)
Q Consensus       131 VrVWDl~tg~~l~~-L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~-----------------------  186 (767)
                      |.++| ++++.+.. +... .   ++.+.|.+.+.+++.+.||++.+||. +++...                       
T Consensus       150 v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~  223 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence            99999 99988777 5421 1   13333433344555555666555555 433221                       


Q ss_pred             ---------------------------eecC-----------CCCeEEEEEcCCCCEEEEEEC-----------CcEEEE
Q 004217          187 ---------------------------SRDF-----------YRPIASIAFHASGELLAVASG-----------HKLYIW  217 (767)
Q Consensus       187 ---------------------------~l~h-----------~~~VtsVafSPdG~~LAsgSd-----------d~V~VW  217 (767)
                                                 .+..           ......++++|+++.++++..           +.|.++
T Consensus       224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI  303 (373)
T 2mad_H          224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence                                       0100           111223678899887777542           349999


Q ss_pred             EcCCCccccCCeEEecCCCCeEEEEEccCCC-eEEEE
Q 004217          218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAA-PLLLT  253 (767)
Q Consensus       218 Dl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~-~LlaS  253 (767)
                      |+.+.+.+.   .+ ........++|+|||+ .++++
T Consensus       304 D~~t~~vv~---~i-~~g~~p~~i~~s~Dg~~~l~v~  336 (373)
T 2mad_H          304 TGLVGQTSS---QI-SLGHDVDAISVAQDGGPDLYAL  336 (373)
T ss_pred             ECCCCEEEE---EE-ECCCCcCeEEECCCCCeEEEEE
Confidence            999887655   22 2334688999999999 44444

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.56  E-value=1.8e-05  Score=80.09  Aligned_cols=175  Identities=9%  Similarity=0.002  Sum_probs=123.0

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE-EE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-VL  145 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~-----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~-~L  145 (767)
                      ...++...++...++...++.|.+|+.. ++     +..+...+.+++++++|+++++...++.|.+||.. ++... .+
T Consensus        22 p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~   99 (300)
T 2qc5_A           22 PYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPL   99 (300)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred             cceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecC
Confidence            4555665666655555567889999887 43     22344679999999999988877778899999988 65432 22


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ec-CCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCC
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMR  222 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~-h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~  222 (767)
                      ......+..+++.+ +++++++...++.|..||.. ++.... +. ....+..++++++|+++++.. .+.|.+||. ++
T Consensus       100 ~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g  176 (300)
T 2qc5_A          100 PQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TG  176 (300)
T ss_dssp             SSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC
T ss_pred             CCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CC
Confidence            22446789999998 88888887778899999987 555432 22 346789999999999666555 345999998 44


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       223 ~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      +...  .....+...+..++++++|..+++.
T Consensus       177 ~~~~--~~~~~~~~~~~~i~~d~~g~l~v~~  205 (300)
T 2qc5_A          177 KLEE--YPLPTNAAAPVGITSGNDGALWFVE  205 (300)
T ss_dssp             CEEE--EECSSTTCCEEEEEECTTSSEEEEE
T ss_pred             cEEE--eeCCCCCCCcceEEECCCCCEEEEc
Confidence            3322  1122344578999999999855443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.55  E-value=6.1e-07  Score=99.21  Aligned_cols=125  Identities=13%  Similarity=0.009  Sum_probs=100.1

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ...+++  ++..|+.+ .++.|++||+...    .+..|...|.++.+.+.  .++++..||.|.+||+.++....    
T Consensus        90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----  160 (388)
T 1xip_A           90 VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----  160 (388)
T ss_dssp             EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----
T ss_pred             eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----
Confidence            555666  77888888 8899999998654    24466778888888764  38889999999999999887643    


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE--EEee----------cCCCCeEEEEEcCCCCEEEE
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC--IGSR----------DFYRPIASIAFHASGELLAV  208 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~--i~~l----------~h~~~VtsVafSPdG~~LAs  208 (767)
                      +...|.+++|+| ++  ++.|..||++++|+...+++  .+.+          .+...|.+|.|.+++.++++
T Consensus       161 ~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          161 LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            345799999999 55  67899999999999988775  5555          26788999999999988874

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.55  E-value=2.9e-05  Score=84.75  Aligned_cols=125  Identities=10%  Similarity=-0.041  Sum_probs=86.8

Q ss_pred             eEEEEeCCCCCCC----CCCCCeEEEEECCCCCeEEEEe----------CCCeEEEEECCCCeEEEEEccC-------CC
Q 004217           92 SLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTH----------GDHTVKIIDCQTGSCLKVLHGH-------RR  150 (767)
Q Consensus        92 sIrlWd~~t~~L~----gH~~sVtsVaFSpDG~~LASgs----------~DGtVrVWDl~tg~~l~~L~gH-------~~  150 (767)
                      .|.++|..+.++.    .-..+  .++|||||++|+.+.          .++.|.+||..+++.+..+.-.       ..
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~  125 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP  125 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence            7788888776422    22222  999999999998886          3678999999998877766422       12


Q ss_pred             CcEEEEEccCCCcEEEEEeC--CCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCC--EEEEEECCcEEEEEcCCCcc
Q 004217          151 TPWVVRFHPLNPTIIASGSL--DHEVRLWNASTAECIGS-RDFYRPIASIAFHASGE--LLAVASGHKLYIWRYNMREE  224 (767)
Q Consensus       151 ~V~sLafsP~dg~lLaSgS~--DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~--~LAsgSdd~V~VWDl~t~~~  224 (767)
                      ....+.|+| ++++|+.+..  +++|.++| .+++.+.. +.....   +.+.|++.  +++.+.++++.+||. +++.
T Consensus       126 ~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~  198 (373)
T 2mad_H          126 YSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGA  198 (373)
T ss_pred             CccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcE
Confidence            356899999 8888887764  58899999 99998887 664433   34445553  333333455777777 5544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.54  E-value=2.2e-05  Score=79.51  Aligned_cols=175  Identities=10%  Similarity=0.011  Sum_probs=122.3

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEE-E
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-L  145 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~-----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~-L  145 (767)
                      ...++...++...++...++.|..+|.. ++     +......+.+++++++|+++++...++.|..||.+ ++.... +
T Consensus        64 ~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~  141 (300)
T 2qc5_A           64 VMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDL  141 (300)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred             ceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccC
Confidence            4455555566655555557889999887 42     22234679999999999988887778899999987 654422 3


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-e-cCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCC
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-R-DFYRPIASIAFHASGELLAVASG-HKLYIWRYNMR  222 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l-~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~  222 (767)
                      ......+..+.+.+ +++++++...++.|..||. +++.... . .....+..++++++|+++++... +.|.+||. ++
T Consensus       142 ~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g  218 (300)
T 2qc5_A          142 PNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TG  218 (300)
T ss_dssp             SSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC
T ss_pred             CCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CC
Confidence            33456789999999 7888887777889999998 5554432 2 23456889999999987766654 45999998 33


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       223 ~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      +...  .....+...+.+++++++|+.++++
T Consensus       219 ~~~~--~~~~~~~~~~~~i~~d~~g~l~v~~  247 (300)
T 2qc5_A          219 EISE--YDIPTPNARPHAITAGKNSEIWFTE  247 (300)
T ss_dssp             CEEE--EECSSTTCCEEEEEECSTTCEEEEE
T ss_pred             cEEE--EECCCCCCCceEEEECCCCCEEEec
Confidence            3222  1122345678999999999854443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.52  E-value=1.1e-05  Score=85.62  Aligned_cols=174  Identities=14%  Similarity=0.107  Sum_probs=113.4

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCC---C----C-CCCeEEEEECCCCCeEEEEeC------CCeEEEEECC
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPLS---P----P-PRSTIAAAFSPDGKTLASTHG------DHTVKIIDCQ  137 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~---g----H-~~sVtsVaFSpDG~~LASgs~------DGtVrVWDl~  137 (767)
                      ...++...++..++. .. ..|.+||..++++.   .    . ...+.+++++++|+++++...      .+.|..+|  
T Consensus        92 v~~i~~~~dg~l~v~-~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--  167 (326)
T 2ghs_A           92 GSALAKISDSKQLIA-SD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--  167 (326)
T ss_dssp             EEEEEEEETTEEEEE-ET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--
T ss_pred             ceEEEEeCCCeEEEE-EC-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--
Confidence            444555556665554 44 45889998766421   1    1 235889999999997765542      24566666  


Q ss_pred             CCeEEEEEccCCCCcEEEEEccCCCcE-EEEEeCCCeEEEEECC--CC-eE-----EEeec-CCCCeEEEEEcCCCCEEE
Q 004217          138 TGSCLKVLHGHRRTPWVVRFHPLNPTI-IASGSLDHEVRLWNAS--TA-EC-----IGSRD-FYRPIASIAFHASGELLA  207 (767)
Q Consensus       138 tg~~l~~L~gH~~~V~sLafsP~dg~l-LaSgS~DGtVrIWDl~--tg-~~-----i~~l~-h~~~VtsVafSPdG~~LA  207 (767)
                      +++.. .+..+......++|+| +++. +++.+.++.|.+||+.  ++ +.     ...+. ....+..++++++|++++
T Consensus       168 ~g~~~-~~~~~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwv  245 (326)
T 2ghs_A          168 KGKVT-KLFADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN  245 (326)
T ss_dssp             TTEEE-EEEEEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred             CCcEE-EeeCCCcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEE
Confidence            56543 3333334577899999 6664 4555667899999986  55 32     22222 234567899999998777


Q ss_pred             EEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEc-cCCCeEEEEEe
Q 004217          208 VASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFH-PHAAPLLLTAE  255 (767)
Q Consensus       208 sgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFS-PDG~~LlaSgs  255 (767)
                      +... ++|.+||. +++...   .+..+...+++++|+ ++++.|+++..
T Consensus       246 a~~~~~~v~~~d~-~g~~~~---~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          246 ARWGEGAVDRYDT-DGNHIA---RYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEETTTEEEEECT-TCCEEE---EEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EEeCCCEEEEECC-CCCEEE---EEECCCCCcEEEEEecCCCCEEEEEec
Confidence            6654 56999998 444332   344455679999998 89887776654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.48  E-value=4.6e-06  Score=92.14  Aligned_cols=247  Identities=13%  Similarity=0.066  Sum_probs=148.9

Q ss_pred             EEEEcCCCEEEEEe----------CCCeEEEEeCCCCCCCC-----C------CCCeEEEEECCCCCeEEEEeC--CCeE
Q 004217           75 EAGRDARRGLASWV----------EAESLHHLRPKYCPLSP-----P------PRSTIAAAFSPDGKTLASTHG--DHTV  131 (767)
Q Consensus        75 vA~sd~g~~LaSgs----------~DgsIrlWd~~t~~L~g-----H------~~sVtsVaFSpDG~~LASgs~--DGtV  131 (767)
                      ++++.+++.++...          .++.|.+||..+.+...     .      ...-..++|+|||++|+.+..  ++.|
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V  162 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV  162 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence            77888888887665          36789999998874221     1      124567999999999988864  6899


Q ss_pred             EEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC-CeEEEeec-C----CCCeE-EEEEc-CCC
Q 004217          132 KIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGSRD-F----YRPIA-SIAFH-ASG  203 (767)
Q Consensus       132 rVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t-g~~i~~l~-h----~~~Vt-sVafS-PdG  203 (767)
                      .|+|+.+++.+.++....  .  ..+.|.+.+.+++.+.||++.+.++.+ ++...... .    ..++. ...|. ++|
T Consensus       163 sVID~~t~~vv~tI~v~g--~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG  238 (386)
T 3sjl_D          163 GVVDLEGKAFKRMLDVPD--C--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG  238 (386)
T ss_dssp             EEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             EEEECCCCcEEEEEECCC--c--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence            999999999998885321  1  223353667888889999999999986 55433211 1    12221 24664 788


Q ss_pred             CEEEEEECCcEEEEEcCCCcccc-CCeEEe--------cCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCC
Q 004217          204 ELLAVASGHKLYIWRYNMREETS-SPRIVL--------RTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGY  274 (767)
Q Consensus       204 ~~LAsgSdd~V~VWDl~t~~~~~-~~~~l~--------~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~  274 (767)
                      +++++..++.|++.|+.+..... ....+.        ........++++++++.+.++.....-..            |
T Consensus       239 ~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~------------h  306 (386)
T 3sjl_D          239 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR------------H  306 (386)
T ss_dssp             EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC------------T
T ss_pred             cEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccc------------c
Confidence            77666666669999997664211 011100        01223445778999998877643111000            0


Q ss_pred             ccCCCCeEEEecCCCCCCC-ceeeccCCCCCCceeeEEecCCC-EEEEeecCCCCCCcccccccccCCceeeeeccCCCC
Q 004217          275 WRYPPPVICMAGAHSSSHP-GLAEEVPLITPPFLRPSFVRDDE-RISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSG  352 (767)
Q Consensus       275 ~~~p~~~v~l~~~~Ssd~~-~L~sg~~~~slpil~psFSpDg~-rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~  352 (767)
                       +.+...+.+-+..+.... .+..+     .+.+.+.|++|++ ++++...                .+..+-.+|..++
T Consensus       307 -k~~~~~V~viD~~t~kv~~~i~vg-----~~~~~lavs~D~~~~ly~tn~----------------~~~~VsViD~~t~  364 (386)
T 3sjl_D          307 -KTASRFVVVLDAKTGERLAKFEMG-----HEIDSINVSQDEKPLLYALST----------------GDKTLYIHDAESG  364 (386)
T ss_dssp             -TSCEEEEEEEETTTCCEEEEEEEE-----EEECEEEECSSSSCEEEEEET----------------TTTEEEEEETTTC
T ss_pred             -CCCCCEEEEEECCCCeEEEEEECC-----CCcceEEECCCCCeEEEEEcC----------------CCCeEEEEECCCC
Confidence             111122333332222211 12222     2566899999997 6666111                1234567777777


Q ss_pred             ceeeeec
Q 004217          353 QYELVLS  359 (767)
Q Consensus       353 q~~~~~~  359 (767)
                      +.-..+.
T Consensus       365 k~~~~i~  371 (386)
T 3sjl_D          365 EELRSVN  371 (386)
T ss_dssp             CEEEEEC
T ss_pred             cEEEEec
Confidence            7666663

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.47  E-value=7.2e-06  Score=90.46  Aligned_cols=174  Identities=9%  Similarity=-0.037  Sum_probs=116.7

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCeEEEEeCCC--eEEEEECCCCeEEEEE-
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDH--TVKIIDCQTGSCLKVL-  145 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~---gH~~sVtsVaFSpDG~~LASgs~DG--tVrVWDl~tg~~l~~L-  145 (767)
                      +..+++..++..+++...++.|++||..++++.   ....... ++|+++++.|+++..++  .|.+||..++.....+ 
T Consensus       133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g  211 (409)
T 3hrp_A          133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIG  211 (409)
T ss_dssp             EEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEE
T ss_pred             ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEee
Confidence            666777777776666667789999999876321   1122233 99999999999888866  8999998766544444 


Q ss_pred             ---ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe----e-cCCCCe--EEEEEcCCCCEEEEEE-C-Cc
Q 004217          146 ---HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS----R-DFYRPI--ASIAFHASGELLAVAS-G-HK  213 (767)
Q Consensus       146 ---~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~----l-~h~~~V--tsVafSPdG~~LAsgS-d-d~  213 (767)
                         ......+.+++++|.++.+++ +..++.|+.||..++.....    . ......  ..++|+|++..|.++. . +.
T Consensus       212 ~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~  290 (409)
T 3hrp_A          212 QLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSS  290 (409)
T ss_dssp             ECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTE
T ss_pred             eccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCE
Confidence               224567889999994444444 77789999999987764332    1 111222  2899999655555554 3 44


Q ss_pred             EEEEEcCCCccccCCeEEecC---------------CCCeEEEEEccCCCeEEE
Q 004217          214 LYIWRYNMREETSSPRIVLRT---------------RRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       214 V~VWDl~t~~~~~~~~~l~~h---------------~~~VtsVaFSPDG~~Lla  252 (767)
                      |+.||.....  .   .+.++               -.....++|+|+|+.+++
T Consensus       291 I~~~~~~g~~--~---~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva  339 (409)
T 3hrp_A          291 VYKITPDGEC--E---WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV  339 (409)
T ss_dssp             EEEECTTCCE--E---EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE
T ss_pred             EEEEecCCCE--E---EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE
Confidence            9999876431  1   22222               245789999999994443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.47  E-value=1e-05  Score=89.30  Aligned_cols=172  Identities=10%  Similarity=-0.033  Sum_probs=116.9

Q ss_pred             EEEEcCCCEEEEEeCCC--eEEEEeCCCCC----C----CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEE
Q 004217           75 EAGRDARRGLASWVEAE--SLHHLRPKYCP----L----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV  144 (767)
Q Consensus        75 vA~sd~g~~LaSgs~Dg--sIrlWd~~t~~----L----~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~  144 (767)
                      +++..+++.|+....++  .|..|+.....    +    ......+.+++++|++..|+.+..++.|+.||..++.....
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence            56667777888777655  78888876542    1    22456788999999555565577789999999987764322


Q ss_pred             ----EccCCCCc-E-EEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC---------------CCCeEEEEEcCCC
Q 004217          145 ----LHGHRRTP-W-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF---------------YRPIASIAFHASG  203 (767)
Q Consensus       145 ----L~gH~~~V-~-sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h---------------~~~VtsVafSPdG  203 (767)
                          ..++...- . .++|+|.++.++++-..++.|+.||.... .......               -.....++|+++|
T Consensus       256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG  334 (409)
T 3hrp_A          256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG  334 (409)
T ss_dssp             EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC
T ss_pred             ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC
Confidence                22232222 3 99999966778888888899999997654 2222222               1347899999999


Q ss_pred             CEEEEEE-CC-cEEEEEcCCCccccCCeEEecC---------------CCCeEEEEEccCCCeEE
Q 004217          204 ELLAVAS-GH-KLYIWRYNMREETSSPRIVLRT---------------RRSLRAVHFHPHAAPLL  251 (767)
Q Consensus       204 ~~LAsgS-dd-~V~VWDl~t~~~~~~~~~l~~h---------------~~~VtsVaFSPDG~~Ll  251 (767)
                      +++++-. .+ +|+.||+.++...    .+.++               -.....|+++++|..++
T Consensus       335 ~lyvad~~~~~~I~~~~~~~G~v~----~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyV  395 (409)
T 3hrp_A          335 NFYIVDGFKGYCLRKLDILDGYVS----TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWI  395 (409)
T ss_dssp             CEEEEETTTTCEEEEEETTTTEEE----EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEE
T ss_pred             CEEEEeCCCCCEEEEEECCCCEEE----EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEE
Confidence            9666655 44 4999997766532    23332               24578999999976433

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.44  E-value=9.3e-06  Score=95.78  Aligned_cols=172  Identities=15%  Similarity=0.039  Sum_probs=110.4

Q ss_pred             EEEEcCCCEEEEEeCCC--------------eEEEEeCCCCC--------CCCCCCCeEEEEECCCCCeEEEEeCCC---
Q 004217           75 EAGRDARRGLASWVEAE--------------SLHHLRPKYCP--------LSPPPRSTIAAAFSPDGKTLASTHGDH---  129 (767)
Q Consensus        75 vA~sd~g~~LaSgs~Dg--------------sIrlWd~~t~~--------L~gH~~sVtsVaFSpDG~~LASgs~DG---  129 (767)
                      ++++.+ +.|+....++              .|++|++.+.+        ...+...+..+.|||||++|+..+.++   
T Consensus       214 ~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~  292 (741)
T 1yr2_A          214 LAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDP  292 (741)
T ss_dssp             CEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCS
T ss_pred             EEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCC
Confidence            345556 6666666544              38899986652        123344689999999999998887654   


Q ss_pred             --eEEEEECCCC--eEEEEEccCCCCcEEEEEccCCCcEEEEEeC----CCeEEEEECCCC--eEEEeecC-CCCeEEEE
Q 004217          130 --TVKIIDCQTG--SCLKVLHGHRRTPWVVRFHPLNPTIIASGSL----DHEVRLWNASTA--ECIGSRDF-YRPIASIA  198 (767)
Q Consensus       130 --tVrVWDl~tg--~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~----DGtVrIWDl~tg--~~i~~l~h-~~~VtsVa  198 (767)
                        .|++||+.++  ++...+..+...+.... +| +++.|+..+.    ++.|.+||+.++  +....+.+ ...+..++
T Consensus       293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~  370 (741)
T 1yr2_A          293 VNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVG  370 (741)
T ss_dssp             CCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEE
T ss_pred             cceEEEEECCCCCCcccEEecCCCCceEEEE-ec-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEE
Confidence              8999999887  31455655665565554 47 6666666654    345999999884  33333443 34466777


Q ss_pred             EcCCCCEEEEEECCc---EEEEEcCCCccccCCeEEec-CCCCeEEEEEccCCCeEEEEE
Q 004217          199 FHASGELLAVASGHK---LYIWRYNMREETSSPRIVLR-TRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       199 fSPdG~~LAsgSdd~---V~VWDl~t~~~~~~~~~l~~-h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      |+ ++.++++...++   |+++|+. ++...   .+.. +...+..+.++||++.++.+.
T Consensus       371 ~~-~~~lv~~~~~dg~~~l~~~~~~-g~~~~---~l~~~~~~~v~~~~~s~d~~~l~~~~  425 (741)
T 1yr2_A          371 IA-GNRLFASYIHDAKSQVLAFDLD-GKPAG---AVSLPGIGSASGLSGRPGDRHAYLSF  425 (741)
T ss_dssp             EE-BTEEEEEEEETTEEEEEEEETT-SCEEE---ECBCSSSCEEEEEECCBTCSCEEEEE
T ss_pred             EE-CCEEEEEEEECCEEEEEEEeCC-CCcee---eccCCCCeEEEEeecCCCCCEEEEEE
Confidence            77 555666666444   4445543 33222   2222 356788999999998777554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.43  E-value=9.2e-06  Score=86.60  Aligned_cols=148  Identities=9%  Similarity=-0.019  Sum_probs=100.9

Q ss_pred             CCCCCeEEEEECCCCCeEEEEeC-----CCeEEEEECCCCeEEEEEccC------CCCcEEEEEccCCCcEEEEEe---C
Q 004217          105 PPPRSTIAAAFSPDGKTLASTHG-----DHTVKIIDCQTGSCLKVLHGH------RRTPWVVRFHPLNPTIIASGS---L  170 (767)
Q Consensus       105 gH~~sVtsVaFSpDG~~LASgs~-----DGtVrVWDl~tg~~l~~L~gH------~~~V~sLafsP~dg~lLaSgS---~  170 (767)
                      +|...+..++|+++|+++++-..     ++.|.+||+++++.+..+...      ...+..+++++.++..+++..   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            45678999999999887665543     579999999999977766432      235688999984456667766   6


Q ss_pred             CCeEEEEECCCCeEEEeecC------------------------------CCCeEEEEEcCCCCEEEEEECCc--EEEEE
Q 004217          171 DHEVRLWNASTAECIGSRDF------------------------------YRPIASIAFHASGELLAVASGHK--LYIWR  218 (767)
Q Consensus       171 DGtVrIWDl~tg~~i~~l~h------------------------------~~~VtsVafSPdG~~LAsgSdd~--V~VWD  218 (767)
                      ++.|.+||+.+++..+.+..                              ...+..++|+|+|+.|+++...+  |+.+|
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            88999999998876664421                              02358899999999888887433  66665


Q ss_pred             cCC---Cc----cccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217          219 YNM---RE----ETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       219 l~t---~~----~~~~~~~l~~h~~~VtsVaFSPDG~~Lla  252 (767)
                      ...   ..    .........++......++++++|..+++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va  264 (343)
T 2qe8_A          224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVG  264 (343)
T ss_dssp             HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEE
T ss_pred             HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEE
Confidence            421   11    00001122234456678999999985444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.38  E-value=2.2e-05  Score=88.24  Aligned_cols=173  Identities=11%  Similarity=0.114  Sum_probs=116.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCC--CCC-------------CCCeEEEEECCCCCeEEEEeCC------CeEEEEECCC
Q 004217           80 ARRGLASWVEAESLHHLRPKYCPL--SPP-------------PRSTIAAAFSPDGKTLASTHGD------HTVKIIDCQT  138 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~~L--~gH-------------~~sVtsVaFSpDG~~LASgs~D------GtVrVWDl~t  138 (767)
                      .+..++.+..+..|.++|..+...  +-+             ...-..+..+||| +++++..+      +.|.++|.++
T Consensus        95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T  173 (462)
T 2ece_A           95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS  173 (462)
T ss_dssp             SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred             CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence            334445667788899999875411  100             1134567889999 77776665      7899999999


Q ss_pred             CeEEEEEccCC---CCcEEEEEccCCCcEEEEEe-------------------CCCeEEEEECCCCeEEEeecCC---CC
Q 004217          139 GSCLKVLHGHR---RTPWVVRFHPLNPTIIASGS-------------------LDHEVRLWNASTAECIGSRDFY---RP  193 (767)
Q Consensus       139 g~~l~~L~gH~---~~V~sLafsP~dg~lLaSgS-------------------~DGtVrIWDl~tg~~i~~l~h~---~~  193 (767)
                      ++.+.++....   .--+.+.|+| +.+.+++..                   .+.+|.+||+.+++.+.++...   ..
T Consensus       174 ~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~  252 (462)
T 2ece_A          174 FEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM  252 (462)
T ss_dssp             CCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred             CeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence            99998886322   2234688899 888888874                   3789999999999888877653   23


Q ss_pred             eEEEEE--cCCCCEEEEEEC-----C--cEEEEEcCCCccccCCeEE-------ec-----------CCCCeEEEEEccC
Q 004217          194 IASIAF--HASGELLAVASG-----H--KLYIWRYNMREETSSPRIV-------LR-----------TRRSLRAVHFHPH  246 (767)
Q Consensus       194 VtsVaf--SPdG~~LAsgSd-----d--~V~VWDl~t~~~~~~~~~l-------~~-----------h~~~VtsVaFSPD  246 (767)
                      ...+.|  +|+|+++.++..     .  .|.+|..+.++... ...+       .+           .......|.+|||
T Consensus       253 P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~-~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          253 ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNA-EKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEE-EEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeE-EEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            445655  999998777764     3  37766655432110 0000       00           0245789999999


Q ss_pred             CCeEEEEEe
Q 004217          247 AAPLLLTAE  255 (767)
Q Consensus       247 G~~LlaSgs  255 (767)
                      |++|.++..
T Consensus       332 GrfLYVSnr  340 (462)
T 2ece_A          332 DKFLYLSLW  340 (462)
T ss_dssp             SCEEEEEET
T ss_pred             CCEEEEEeC
Confidence            999888764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.33  E-value=9.5e-06  Score=84.64  Aligned_cols=174  Identities=10%  Similarity=0.039  Sum_probs=112.2

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCC---C----C-CCCCeEEEEECCCCCeEEE----EeC------------
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPL---S----P-PPRSTIAAAFSPDGKTLAS----THG------------  127 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L---~----g-H~~sVtsVaFSpDG~~LAS----gs~------------  127 (767)
                      ...++...+++.+++...++.|.+|+.+ +++   .    + ....+.+++++++|+++++    |..            
T Consensus        88 ~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~  166 (305)
T 3dr2_A           88 TNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPEL  166 (305)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSS
T ss_pred             cceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccccccc
Confidence            3445555566655444455788888875 321   1    1 1234678999999998886    332            


Q ss_pred             -CCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCC------CeEEEEECCCCeEEE--eec--CCCCeEE
Q 004217          128 -DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD------HEVRLWNASTAECIG--SRD--FYRPIAS  196 (767)
Q Consensus       128 -DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~D------GtVrIWDl~tg~~i~--~l~--h~~~Vts  196 (767)
                       .+.|..||.++++.....  .......++|+| +++.|+.+..+      +.|.+||+..+....  .+.  .......
T Consensus       167 ~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdg  243 (305)
T 3dr2_A          167 AHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDG  243 (305)
T ss_dssp             SCEEEEEECSSSCCCEEEE--EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCS
T ss_pred             CCCeEEEEcCCCCcEEEEe--cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCe
Confidence             256888888777654433  345578899999 77766665554      789999987654211  111  2344567


Q ss_pred             EEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          197 IAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       197 VafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ++++++|++.++ ..++|.+||.. ++...   .+..+ ..+.+++|+++++.|.+++.
T Consensus       244 i~~d~~G~lwv~-~~~gv~~~~~~-g~~~~---~~~~~-~~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          244 FCVDRGGWLWSS-SGTGVCVFDSD-GQLLG---HIPTP-GTASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             EEECTTSCEEEC-CSSEEEEECTT-SCEEE---EEECS-SCCCEEEECTTSCEEEEEET
T ss_pred             EEECCCCCEEEe-cCCcEEEECCC-CCEEE---EEECC-CceeEEEEeCCCCEEEEEcC
Confidence            899999995544 46679999984 33322   22222 36889999999987777653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.32  E-value=1.7e-05  Score=84.46  Aligned_cols=181  Identities=8%  Similarity=-0.069  Sum_probs=113.4

Q ss_pred             eEEEEEEcCCCEEEEEeC-----CCeEEEEeCCCCCC------C----CCCCCeEEEEECCCCCeE-EEEe---CCCeEE
Q 004217           72 QIFEAGRDARRGLASWVE-----AESLHHLRPKYCPL------S----PPPRSTIAAAFSPDGKTL-ASTH---GDHTVK  132 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~-----DgsIrlWd~~t~~L------~----gH~~sVtsVaFSpDG~~L-ASgs---~DGtVr  132 (767)
                      +.-+++..+++..+.-..     +..|.+||.+++++      .    .+...+..+++++++..+ ++-.   .++.|.
T Consensus        69 p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~  148 (343)
T 2qe8_A           69 VLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALI  148 (343)
T ss_dssp             EEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEE
T ss_pred             eeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEE
Confidence            555666555543333222     47899999877641      1    233457899999865454 5544   678999


Q ss_pred             EEECCCCeEEEEEccCC-----------------------------CCcEEEEEccCCCcEEEEEeCCC-eEEEEECC--
Q 004217          133 IIDCQTGSCLKVLHGHR-----------------------------RTPWVVRFHPLNPTIIASGSLDH-EVRLWNAS--  180 (767)
Q Consensus       133 VWDl~tg~~l~~L~gH~-----------------------------~~V~sLafsP~dg~lLaSgS~DG-tVrIWDl~--  180 (767)
                      +||+.+++..+.+.+|.                             ..+..|+|+| +++.|+.+..++ .+..++..  
T Consensus       149 v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~  227 (343)
T 2qe8_A          149 RVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADL  227 (343)
T ss_dssp             EEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHH
T ss_pred             EEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHh
Confidence            99999888776665431                             1357899999 787777776665 44444421  


Q ss_pred             -CCeE--------EEeecCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeE
Q 004217          181 -TAEC--------IGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (767)
Q Consensus       181 -tg~~--------i~~l~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~L  250 (767)
                       .+..        +....+......++++++|+++++... +.|.+||..+++...  .....+...+.+++|.++++.+
T Consensus       228 ~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~--~~~~~~~~~p~~va~~~~g~l~  305 (343)
T 2qe8_A          228 SNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKL--LVTDEKLSWTDSFNFGSDGYLY  305 (343)
T ss_dssp             TCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEE--EEECGGGSCEEEEEECTTSCEE
T ss_pred             cCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEE--EEECCceecCCeeEECCCCcEE
Confidence             1110        111223345667999999987777764 459999985554211  1111224568999999998866


Q ss_pred             EEEEe
Q 004217          251 LLTAE  255 (767)
Q Consensus       251 laSgs  255 (767)
                      +++..
T Consensus       306 v~~~~  310 (343)
T 2qe8_A          306 FDCNQ  310 (343)
T ss_dssp             EEECC
T ss_pred             EEeCc
Confidence            65554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.32  E-value=2.2e-05  Score=92.18  Aligned_cols=174  Identities=11%  Similarity=0.061  Sum_probs=117.0

Q ss_pred             EEEEcCCCEEEEEeCCC-------------eEEEEeCCCCC--------CCC-CCCCeEEEEECCCCCeEEEEeC----C
Q 004217           75 EAGRDARRGLASWVEAE-------------SLHHLRPKYCP--------LSP-PPRSTIAAAFSPDGKTLASTHG----D  128 (767)
Q Consensus        75 vA~sd~g~~LaSgs~Dg-------------sIrlWd~~t~~--------L~g-H~~sVtsVaFSpDG~~LASgs~----D  128 (767)
                      ++++ +++.|+..+.+.             .|++|++.+.+        ... |...+..+.|||||++|+....    +
T Consensus       180 ~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~  258 (693)
T 3iuj_A          180 ISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSG  258 (693)
T ss_dssp             CEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSC
T ss_pred             EEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCC
Confidence            3455 777777777663             49999987652        123 4456789999999998865443    3


Q ss_pred             CeEEEEECCCCe-EEEEEccCCCCcEEEEEccCCCcEEEEEeCC---CeEEEEECCCCeE---EEeecCCCCeEEEEEcC
Q 004217          129 HTVKIIDCQTGS-CLKVLHGHRRTPWVVRFHPLNPTIIASGSLD---HEVRLWNASTAEC---IGSRDFYRPIASIAFHA  201 (767)
Q Consensus       129 GtVrVWDl~tg~-~l~~L~gH~~~V~sLafsP~dg~lLaSgS~D---GtVrIWDl~tg~~---i~~l~h~~~VtsVafSP  201 (767)
                      ..|++||+.++. ....+..+....... |++.++.+++....|   +.|..||+.++..   .....+...+.  .|++
T Consensus       259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~  335 (693)
T 3iuj_A          259 NRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS  335 (693)
T ss_dssp             CEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE
T ss_pred             cEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE
Confidence            589999998763 455666676666665 566356666666554   6799999988754   33345555554  8999


Q ss_pred             CCCEEEEEE-CC---cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          202 SGELLAVAS-GH---KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       202 dG~~LAsgS-dd---~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ++++|+... ++   .|++||+..+....   ........+..+.++++++.++.+..
T Consensus       336 ~g~~lv~~~~~~g~~~l~~~d~~g~~~~~---l~~p~~~~~~~~~~~~d~~~l~~~~s  390 (693)
T 3iuj_A          336 GSGYLFAEYMVDATARVEQFDYEGKRVRE---VALPGLGSVSGFNGKHDDPALYFGFE  390 (693)
T ss_dssp             ETTEEEEEEEETTEEEEEEECTTSCEEEE---ECCSSSSEEEECCCCTTCSCEEEEEE
T ss_pred             ECCEEEEEEEECCeeEEEEEECCCCeeEE---eecCCCceEEeeecCCCCCEEEEEec
Confidence            999887766 33   39999987543211   22234456778888999887776643

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.24  E-value=2.7e-05  Score=81.72  Aligned_cols=172  Identities=9%  Similarity=0.009  Sum_probs=117.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCCCC--CCCeE--EEEECCCCCeE-EEEeCCCeEEEEECCCCeEEEEEccCCCCcEE
Q 004217           80 ARRGLASWVEAESLHHLRPKYCPLSPP--PRSTI--AAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~~L~gH--~~sVt--sVaFSpDG~~L-ASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~s  154 (767)
                      ++...++.+.++.|+.+|++++++...  .....  .+++.  ++.| +....++.+.+||.++.+.+.++..- ..-+.
T Consensus        64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwG  140 (268)
T 3nok_A           64 QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWG  140 (268)
T ss_dssp             TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCC
T ss_pred             CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeE
Confidence            456666777888899999998854321  22232  35554  4444 44556899999999999999998743 33355


Q ss_pred             EEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC---C---CCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCccccC
Q 004217          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF---Y---RPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSS  227 (767)
Q Consensus       155 LafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h---~---~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~~  227 (767)
                      +++   +++.|+.+..+++|.++|..+.+.+..+.-   .   ..++.+.|. +|++.+... .+.|.+.|.++++.+..
T Consensus       141 Lt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~  216 (268)
T 3nok_A          141 LCY---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGV  216 (268)
T ss_dssp             EEE---ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEE
T ss_pred             Eec---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEE
Confidence            554   456666666799999999999998887542   1   245677877 776444332 45599999999986541


Q ss_pred             CeEE----------ecCCCCeEEEEEccCCCeEEEEEeeCC
Q 004217          228 PRIV----------LRTRRSLRAVHFHPHAAPLLLTAEVND  258 (767)
Q Consensus       228 ~~~l----------~~h~~~VtsVaFSPDG~~LlaSgsvwd  258 (767)
                      ...-          ..-.+-.+.|+|+|+++.|++|++.|.
T Consensus       217 Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp  257 (268)
T 3nok_A          217 IDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWP  257 (268)
T ss_dssp             EECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCS
T ss_pred             EECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCC
Confidence            1110          011245789999999999999999885

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.24  E-value=6.7e-05  Score=83.85  Aligned_cols=97  Identities=10%  Similarity=0.010  Sum_probs=74.7

Q ss_pred             CeEEEEeCCCCCCC----CCCCCeEEEEECCCCCeEEEEe----------CCCeEEEEECCCCeEEEEEccC-------C
Q 004217           91 ESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTH----------GDHTVKIIDCQTGSCLKVLHGH-------R  149 (767)
Q Consensus        91 gsIrlWd~~t~~L~----gH~~sVtsVaFSpDG~~LASgs----------~DGtVrVWDl~tg~~l~~L~gH-------~  149 (767)
                      +.|.++|..+.++.    .-..+  .++++|||++|+.+.          .++.|.++|..+++.+..+.-.       .
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g  176 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG  176 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence            68999999887422    11233  899999999998876          3678999999999988877421       2


Q ss_pred             CCcEEEEEccCCCcEEEEEeC--CCeEEEEECCCCeEEEeecC
Q 004217          150 RTPWVVRFHPLNPTIIASGSL--DHEVRLWNASTAECIGSRDF  190 (767)
Q Consensus       150 ~~V~sLafsP~dg~lLaSgS~--DGtVrIWDl~tg~~i~~l~h  190 (767)
                      .....+.|+| ++++++.+..  +++|.+.|+.+++.+..+..
T Consensus       177 ~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v  218 (426)
T 3c75_H          177 TYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV  218 (426)
T ss_dssp             CCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence            3466789999 8887777663  68999999999998877653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.24  E-value=7.6e-05  Score=82.39  Aligned_cols=138  Identities=10%  Similarity=0.012  Sum_probs=94.8

Q ss_pred             cCCCEEEEEeC-----CCeEEEEeCCCCCCC----CCCCCeEEEEECCCCCeEEEEe----------CCCeEEEEECCCC
Q 004217           79 DARRGLASWVE-----AESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTH----------GDHTVKIIDCQTG  139 (767)
Q Consensus        79 d~g~~LaSgs~-----DgsIrlWd~~t~~L~----gH~~sVtsVaFSpDG~~LASgs----------~DGtVrVWDl~tg  139 (767)
                      .++..++....     ++.|.+.|..+.++.    .-..+ . +++||||++|+++.          .++.|.+||..++
T Consensus        42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~  119 (386)
T 3sjl_D           42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL  119 (386)
T ss_dssp             CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence            45666665544     578999998876422    12223 4 99999999998775          3678999999999


Q ss_pred             eEEEEEccC-------CCCcEEEEEccCCCcEEEEEeC--CCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE
Q 004217          140 SCLKVLHGH-------RRTPWVVRFHPLNPTIIASGSL--DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS  210 (767)
Q Consensus       140 ~~l~~L~gH-------~~~V~sLafsP~dg~lLaSgS~--DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS  210 (767)
                      +.+..+.-.       ......+.|+| ++++++.+..  +++|.++|+.+++.+..+...+.  ...+....+.+++.+
T Consensus       120 ~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~  196 (386)
T 3sjl_D          120 LPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHC  196 (386)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEE
T ss_pred             eEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEEC
Confidence            988877432       12567799999 7887777653  68999999999999988764432  122322233443433


Q ss_pred             -CCcEEEEEcCC
Q 004217          211 -GHKLYIWRYNM  221 (767)
Q Consensus       211 -dd~V~VWDl~t  221 (767)
                       ++++.+.++..
T Consensus       197 ~DG~~~~v~~~~  208 (386)
T 3sjl_D          197 RDGSLAKVAFGT  208 (386)
T ss_dssp             TTSCEEEEECCS
T ss_pred             CCCCEEEEECCC
Confidence             45577777765

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.24  E-value=2.4e-05  Score=82.00  Aligned_cols=175  Identities=9%  Similarity=0.031  Sum_probs=113.5

Q ss_pred             CCCEEEEEeCCC--eEEEEeCCCCCCCC---CCCCeEEEEECCCCCeEEEE-eCCCeEEEEECCCCeEEEEEccCCCCcE
Q 004217           80 ARRGLASWVEAE--SLHHLRPKYCPLSP---PPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (767)
Q Consensus        80 ~g~~LaSgs~Dg--sIrlWd~~t~~L~g---H~~sVtsVaFSpDG~~LASg-s~DGtVrVWDl~tg~~l~~L~gH~~~V~  153 (767)
                      ++....+.+.++  .|+.+|++++++..   -..........++++.|... ..++.+.+||.++.+.+.++.-.. .-+
T Consensus        52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~  130 (262)
T 3nol_A           52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EGW  130 (262)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCC
T ss_pred             CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-Cce
Confidence            445555555555  89999999885221   11233332233345555554 458899999999999999887432 224


Q ss_pred             EEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC---C---CCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCcccc
Q 004217          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF---Y---RPIASIAFHASGELLAVAS-GHKLYIWRYNMREETS  226 (767)
Q Consensus       154 sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h---~---~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~  226 (767)
                      .++  + +++.|+....+++|.++|..+.+.+..+.-   .   ..++.+.|. +|+..+... ++.|.+.|.++++...
T Consensus       131 glt--~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~  206 (262)
T 3nol_A          131 GLT--H-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTG  206 (262)
T ss_dssp             CEE--E-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEE
T ss_pred             EEe--c-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEE
Confidence            454  4 445455545578899999999988877542   1   345567786 676444333 4559999999998654


Q ss_pred             CCeE--Ee-------cCCCCeEEEEEccCCCeEEEEEeeCCc
Q 004217          227 SPRI--VL-------RTRRSLRAVHFHPHAAPLLLTAEVNDL  259 (767)
Q Consensus       227 ~~~~--l~-------~h~~~VtsVaFSPDG~~LlaSgsvwdl  259 (767)
                      ....  +.       .-....+.|+|+|+++.|+++|+.|.-
T Consensus       207 ~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~  248 (262)
T 3nol_A          207 IIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPK  248 (262)
T ss_dssp             EEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred             EEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCc
Confidence            1111  00       112356899999999999999998853

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.21  E-value=1.5e-07  Score=102.26  Aligned_cols=140  Identities=11%  Similarity=0.013  Sum_probs=76.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCC-cE-
Q 004217           80 ARRGLASWVEAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT-PW-  153 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~~L----~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~-V~-  153 (767)
                      .+..++.++.|+.|..||..++++    ..  +.+.+..+..+++.+++++.|+.|+.||.++|+.+..+..+... +. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            577888899999999999988742    22  45555556667888888889999999999999877666543211 10 


Q ss_pred             EEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC-cEEEEEcCCCcccc
Q 004217          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETS  226 (767)
Q Consensus       154 sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd-~V~VWDl~t~~~~~  226 (767)
                      ...+.  .+..+++++.|+.|+.||.++|+.+..+.....   ..++|++..|++++.+ .|+.||.++++...
T Consensus        86 sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W  154 (369)
T 2hz6_A           86 SPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRW  154 (369)
T ss_dssp             CSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred             CceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence            00111  345677888899999999999999887654332   3456788888887754 59999999988655

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.16  E-value=3.6e-05  Score=86.49  Aligned_cols=182  Identities=10%  Similarity=0.002  Sum_probs=117.9

Q ss_pred             EEcCCCEEEEEeCC------CeEEEEeCCCCCCC------CCC-CCeEEEEECCCCCeEEEEe-----------------
Q 004217           77 GRDARRGLASWVEA------ESLHHLRPKYCPLS------PPP-RSTIAAAFSPDGKTLASTH-----------------  126 (767)
Q Consensus        77 ~sd~g~~LaSgs~D------gsIrlWd~~t~~L~------gH~-~sVtsVaFSpDG~~LASgs-----------------  126 (767)
                      ...++ .+++...+      +.|.+.|.++.++.      ... .--..+-|+|+++.+++..                 
T Consensus       145 ~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~  223 (462)
T 2ece_A          145 CGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLK  223 (462)
T ss_dssp             ECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHH
T ss_pred             ECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhh
Confidence            33455 55555444      67999998876422      122 2234688899999988875                 


Q ss_pred             --CCCeEEEEECCCCeEEEEEccC--CCCcEEEEE--ccCCCcEEEEEe------CCCeEEEEECCCCeEEEe--e--cC
Q 004217          127 --GDHTVKIIDCQTGSCLKVLHGH--RRTPWVVRF--HPLNPTIIASGS------LDHEVRLWNASTAECIGS--R--DF  190 (767)
Q Consensus       127 --~DGtVrVWDl~tg~~l~~L~gH--~~~V~sLaf--sP~dg~lLaSgS------~DGtVrIWDl~tg~~i~~--l--~h  190 (767)
                        .+.+|.+||+.+++.+.++.--  ......+.|  +| ++++++.++      .+++|.+|....++....  +  ..
T Consensus       224 ~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~  302 (462)
T 2ece_A          224 DRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPA  302 (462)
T ss_dssp             HHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECC
T ss_pred             hccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCC
Confidence              3689999999999888877642  123456666  99 666665555      677888876655432111  1  10


Q ss_pred             -----------------CCCeEEEEEcCCCCEEEEEEC--CcEEEEEcCCCccccCCeEE-ecCC-------------CC
Q 004217          191 -----------------YRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIV-LRTR-------------RS  237 (767)
Q Consensus       191 -----------------~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~t~~~~~~~~~l-~~h~-------------~~  237 (767)
                                       ......|.+++||++|.++..  +.|.+||+...........+ .+..             ..
T Consensus       303 ~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~gg  382 (462)
T 2ece_A          303 EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGA  382 (462)
T ss_dssp             EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSC
T ss_pred             ccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCC
Confidence                             245778999999999999984  44999998633221111111 1100             13


Q ss_pred             eEEEEEccCCCeEEEEEe---eCCcC
Q 004217          238 LRAVHFHPHAAPLLLTAE---VNDLD  260 (767)
Q Consensus       238 VtsVaFSPDG~~LlaSgs---vwdl~  260 (767)
                      -..++++|||++|+++.+   -||-.
T Consensus       383 Pr~~~lSpDGk~LyVaNsl~~~wd~Q  408 (462)
T 2ece_A          383 PQMLEISRDGRRVYVTNSLYSTWDNQ  408 (462)
T ss_dssp             CCCEEECTTSSEEEEECCCCHHHHHH
T ss_pred             CCEEEEcCCCCEEEEEcCCccccccc
Confidence            588999999999998875   55544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.15  E-value=9.9e-05  Score=77.52  Aligned_cols=174  Identities=10%  Similarity=0.014  Sum_probs=113.4

Q ss_pred             EEcCCCEEEEEeC---CCeEEEEeCCCCCCC-----CCCCCeEEEEECCCCCeEEEE-eCCCeEEEEECCCCeEEEEEcc
Q 004217           77 GRDARRGLASWVE---AESLHHLRPKYCPLS-----PPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        77 ~sd~g~~LaSgs~---DgsIrlWd~~t~~L~-----gH~~sVtsVaFSpDG~~LASg-s~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      +..++ .|+..+.   ++.|+++|..++++.     +.......+++.  ++.|+.+ -.++.|.++|..+++.+.++..
T Consensus        28 ~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~  104 (266)
T 2iwa_A           28 YAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTH  104 (266)
T ss_dssp             ECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEEC
T ss_pred             EeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEEC
Confidence            33444 5555442   578999999987422     111222345554  5555544 4578999999999999988853


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCC------CCeEEEEEcCCCCEEEEEE-CCcEEEEEcC
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY------RPIASIAFHASGELLAVAS-GHKLYIWRYN  220 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~------~~VtsVafSPdG~~LAsgS-dd~V~VWDl~  220 (767)
                      -...-+.  +++ +++.++.+..+++|.++|..+.+.+..+.-.      ...+.+.|. +|+..+... ++.|.+.|..
T Consensus       105 g~~~g~g--lt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~  180 (266)
T 2iwa_A          105 QMKDGWG--LAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAK  180 (266)
T ss_dssp             CSSSCCE--EEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETT
T ss_pred             CCCCeEE--EEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECC
Confidence            2122233  455 4444444557899999999998888775421      246788888 675443332 4559999999


Q ss_pred             CCccccCCeEEecC-----------CCCeEEEEEccCCCeEEEEEeeCC
Q 004217          221 MREETSSPRIVLRT-----------RRSLRAVHFHPHAAPLLLTAEVND  258 (767)
Q Consensus       221 t~~~~~~~~~l~~h-----------~~~VtsVaFSPDG~~LlaSgsvwd  258 (767)
                      +++.+.... +.+.           ....+.|+|+|+++.++++++.|+
T Consensus       181 tg~V~~~I~-~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~  228 (266)
T 2iwa_A          181 DGTLLGWIL-LPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP  228 (266)
T ss_dssp             TCCEEEEEE-CHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred             CCcEEEEEE-CCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence            998755111 1110           135689999999999999998774

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.12  E-value=0.00016  Score=74.98  Aligned_cols=173  Identities=14%  Similarity=0.093  Sum_probs=111.9

Q ss_pred             CCEEEEEeCC--CeEEEEeCCCCCCCC---CCCCeEEEEECCCCCeE-EEEeCCCeEEEEECCCCeEEEEEccCCCCcEE
Q 004217           81 RRGLASWVEA--ESLHHLRPKYCPLSP---PPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (767)
Q Consensus        81 g~~LaSgs~D--gsIrlWd~~t~~L~g---H~~sVtsVaFSpDG~~L-ASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~s  154 (767)
                      +....+...+  ..|+.+|++++++..   -...........+++.| .....++.+.+||.++.+.+.++.... .-+.
T Consensus        31 ~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gwg  109 (243)
T 3mbr_X           31 GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGWA  109 (243)
T ss_dssp             TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSS-CCCE
T ss_pred             CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-CceE
Confidence            4444444443  489999999885321   11222222222234455 444568999999999999999987433 3355


Q ss_pred             EEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCC------CCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCccccC
Q 004217          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY------RPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSS  227 (767)
Q Consensus       155 LafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~------~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~~  227 (767)
                      +++   ++..|+.+..+++|.++|..+.+.+..+.-.      ..++.+.|. +|+..+... .+.|.+.|.++++.+..
T Consensus       110 lt~---dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~  185 (243)
T 3mbr_X          110 LTS---DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAW  185 (243)
T ss_dssp             EEE---CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEE
T ss_pred             Eee---CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEE
Confidence            654   3444444456889999999999888776421      345667776 666554442 45699999999986541


Q ss_pred             CeE--E--------ecCCCCeEEEEEccCCCeEEEEEeeCC
Q 004217          228 PRI--V--------LRTRRSLRAVHFHPHAAPLLLTAEVND  258 (767)
Q Consensus       228 ~~~--l--------~~h~~~VtsVaFSPDG~~LlaSgsvwd  258 (767)
                      ...  +        ....+-.+.|+++|+++.|++|++.|.
T Consensus       186 idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp  226 (243)
T 3mbr_X          186 IDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWP  226 (243)
T ss_dssp             EECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCS
T ss_pred             EECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCC
Confidence            110  0        011235689999999999999999885

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.08  E-value=7e-05  Score=88.15  Aligned_cols=160  Identities=13%  Similarity=0.146  Sum_probs=110.0

Q ss_pred             eEEEEeCCCCCC------CCC-------CCCeEEEEECCCC---CeEEEEeCCCeEEEEECCCCeEEEEEccCCCC----
Q 004217           92 SLHHLRPKYCPL------SPP-------PRSTIAAAFSPDG---KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT----  151 (767)
Q Consensus        92 sIrlWd~~t~~L------~gH-------~~sVtsVaFSpDG---~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~----  151 (767)
                      .|..+|.+++++      ..|       ......+....||   +.|+.++.+|.|+++|.++|+.+..+......    
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence            488888887742      223       1223334444578   68899999999999999999988766422100    


Q ss_pred             -------c------------------------EEEEEccCCCcEEEEEeC------------------------------
Q 004217          152 -------P------------------------WVVRFHPLNPTIIASGSL------------------------------  170 (767)
Q Consensus       152 -------V------------------------~sLafsP~dg~lLaSgS~------------------------------  170 (767)
                             +                        ..++|+| +..+++....                              
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  442 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT  442 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence                   0                        1467888 6666666432                              


Q ss_pred             -------------CCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC-cEEEEEcCCCccccCCeEEecCCC
Q 004217          171 -------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRR  236 (767)
Q Consensus       171 -------------DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd-~V~VWDl~t~~~~~~~~~l~~h~~  236 (767)
                                   .+.|..||+.+++.+..+.+...+....+..++.++++++.+ .+++||.++++.+.  ....++..
T Consensus       443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw--~~~~~~~~  520 (677)
T 1kb0_A          443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW--EAPTGTGV  520 (677)
T ss_dssp             CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE--EEECSSCC
T ss_pred             ccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceee--eeeCCCCc
Confidence                         278999999999999888766666666677788888888754 49999999999866  22223333


Q ss_pred             CeEEEEEccCCCeEEEEE
Q 004217          237 SLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       237 ~VtsVaFSPDG~~LlaSg  254 (767)
                      .-.-+.|..+|+.+++..
T Consensus       521 ~~~p~~y~~~G~~~v~~~  538 (677)
T 1kb0_A          521 VAAPSTYMVDGRQYVSVA  538 (677)
T ss_dssp             CSCCEEEEETTEEEEEEE
T ss_pred             ccCCEEEEeCCEEEEEEe
Confidence            334566778998666543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.02  E-value=0.00016  Score=85.30  Aligned_cols=178  Identities=13%  Similarity=0.091  Sum_probs=117.4

Q ss_pred             EEEEcCCCEEEEEeCCC-------------------eEEEEeCCCCCC------CCCC-------CCeEEEEECCCCC--
Q 004217           75 EAGRDARRGLASWVEAE-------------------SLHHLRPKYCPL------SPPP-------RSTIAAAFSPDGK--  120 (767)
Q Consensus        75 vA~sd~g~~LaSgs~Dg-------------------sIrlWd~~t~~L------~gH~-------~sVtsVaFSpDG~--  120 (767)
                      .+.......++.+..++                   .|..||.+++++      ..|.       ..+.......+|+  
T Consensus       240 ~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~  319 (689)
T 1yiq_A          240 FAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPR  319 (689)
T ss_dssp             EEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE
T ss_pred             eeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEE
Confidence            34455667777776665                   388889888742      2221       2222223333665  


Q ss_pred             -eEEEEeCCCeEEEEECCCCeEEEEEccCC-C--------------------------------------CcEEEEEccC
Q 004217          121 -TLASTHGDHTVKIIDCQTGSCLKVLHGHR-R--------------------------------------TPWVVRFHPL  160 (767)
Q Consensus       121 -~LASgs~DGtVrVWDl~tg~~l~~L~gH~-~--------------------------------------~V~sLafsP~  160 (767)
                       .|+.++.+|.++++|.++|+.+....... .                                      .-..++|+| 
T Consensus       320 ~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-  398 (689)
T 1yiq_A          320 KVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-  398 (689)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-
T ss_pred             EEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-
Confidence             78899999999999999999874432111 0                                      011267888 


Q ss_pred             CCcEEEEEeC---------------------------------------------CCeEEEEECCCCeEEEeecCCCCeE
Q 004217          161 NPTIIASGSL---------------------------------------------DHEVRLWNASTAECIGSRDFYRPIA  195 (767)
Q Consensus       161 dg~lLaSgS~---------------------------------------------DGtVrIWDl~tg~~i~~l~h~~~Vt  195 (767)
                      +..+++....                                             +|+|+.||+.+++.+..+.+...+.
T Consensus       399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~  478 (689)
T 1yiq_A          399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFN  478 (689)
T ss_dssp             TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCC
T ss_pred             CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCcc
Confidence            5566665421                                             4789999999999998877655555


Q ss_pred             EEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          196 SIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       196 sVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ...+...+.+++.++.++ |+.||.++++.+.  ....++...-.-+.|..||+.+++...
T Consensus       479 ~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw--~~~~~~~~~~~p~ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          479 GGTLSTAGNLVFEGSADGRVIAYAADTGEKLW--EQPAASGVMAAPVTYSVDGEQYVTFMA  537 (689)
T ss_dssp             CCEEEETTTEEEEECTTSEEEEEETTTCCEEE--EEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CccceECCCEEEEECCCCcEEEEECCCCccce--eeeCCCCcccCceEEEECCEEEEEEEe
Confidence            556677788888888555 9999999999866  122233333345777889986665543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.99  E-value=0.00024  Score=82.22  Aligned_cols=179  Identities=8%  Similarity=-0.062  Sum_probs=125.4

Q ss_pred             CCCEEEEEe-CCCeEEEEeCCCCCCC-----CCCCCeEEEEE-C-CCCCeEEEEe------------------CCCeEEE
Q 004217           80 ARRGLASWV-EAESLHHLRPKYCPLS-----PPPRSTIAAAF-S-PDGKTLASTH------------------GDHTVKI  133 (767)
Q Consensus        80 ~g~~LaSgs-~DgsIrlWd~~t~~L~-----gH~~sVtsVaF-S-pDG~~LASgs------------------~DGtVrV  133 (767)
                      +|++++... .+..|.+.|+.+.+..     ........+++ + |+++++++++                  .++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            456666554 4556999999886421     23356889998 5 8999998884                  2568999


Q ss_pred             EECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCC--------------------------------------eEE
Q 004217          134 IDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH--------------------------------------EVR  175 (767)
Q Consensus       134 WDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DG--------------------------------------tVr  175 (767)
                      +|.++.+.+.++.--. ....++++| +++++++.+.+.                                      .|.
T Consensus       180 ID~~t~~v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EETTTTEEEEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EECCCCeEEEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            9999999888876333 456788999 788888877553                                      477


Q ss_pred             EEECCC--CeE-EEeecCCCCeEEEEEcCCCCEEEEEE--CCcEEEEEcCCCccc--------cCCeEEecCCCCeEEEE
Q 004217          176 LWNAST--AEC-IGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREET--------SSPRIVLRTRRSLRAVH  242 (767)
Q Consensus       176 IWDl~t--g~~-i~~l~h~~~VtsVafSPdG~~LAsgS--dd~V~VWDl~t~~~~--------~~~~~l~~h~~~VtsVa  242 (767)
                      +.|.++  ++. +..+.......++.++|||+++++++  ++.|.++|+.+.+..        ........-......++
T Consensus       258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a  337 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA  337 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred             EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence            778877  444 45555455667899999999999887  455999999865310        00111223345688999


Q ss_pred             EccCCCeEEEEEe------eCCcCC
Q 004217          243 FHPHAAPLLLTAE------VNDLDS  261 (767)
Q Consensus       243 FSPDG~~LlaSgs------vwdl~s  261 (767)
                      |+||| ++.++..      .|+++.
T Consensus       338 F~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          338 FDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             ECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             ECCCC-eEEEEEecCCcEEEEEhhH
Confidence            99999 6666543      666653

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.95  E-value=8.7e-05  Score=81.33  Aligned_cols=86  Identities=12%  Similarity=-0.099  Sum_probs=64.1

Q ss_pred             eEEEEeCCCCCCC----CCCCCeEEEEECCCCCeEEEEe----------CCCeEEEEECCCCeEEEEEccC-------CC
Q 004217           92 SLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTH----------GDHTVKIIDCQTGSCLKVLHGH-------RR  150 (767)
Q Consensus        92 sIrlWd~~t~~L~----gH~~sVtsVaFSpDG~~LASgs----------~DGtVrVWDl~tg~~l~~L~gH-------~~  150 (767)
                      .|.++|..+.+..    .-..+  .+.|+||+++|+++.          .++.|.+||..+++.+.++...       ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            7778888776422    11234  799999999999886          3689999999999999888643       13


Q ss_pred             CcEEEEEccCCCcEEEEEeC--CCeEEE--EECC
Q 004217          151 TPWVVRFHPLNPTIIASGSL--DHEVRL--WNAS  180 (767)
Q Consensus       151 ~V~sLafsP~dg~lLaSgS~--DGtVrI--WDl~  180 (767)
                      ....+.|+| ++++++.+..  +..|.+  +|+.
T Consensus       125 ~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~  157 (368)
T 1mda_H          125 RVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGAS  157 (368)
T ss_dssp             CTTSEEECT-TSSCEEEEECSSSCEEEEEETTTE
T ss_pred             CcceEEEcC-CCCEEEEEccCCCCeEEEEEEchh
Confidence            466899999 7777777654  466888  8774

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.91  E-value=0.00077  Score=70.63  Aligned_cols=176  Identities=8%  Similarity=0.054  Sum_probs=108.4

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCCCCCC-----------------------CCCCeEEEEECC-CCCeEEEEeCCCe
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYCPLSP-----------------------PPRSTIAAAFSP-DGKTLASTHGDHT  130 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~g-----------------------H~~sVtsVaFSp-DG~~LASgs~DGt  130 (767)
                      ++...++..+++...++.|..|+...+.+..                       ....+..+++.+ +|+ |+.+...+.
T Consensus        24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~~~~  102 (322)
T 2fp8_A           24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDCYYH  102 (322)
T ss_dssp             EECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEETTTE
T ss_pred             EEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEECCCC
Confidence            3344455557777777888888776543210                       013578999998 555 555555556


Q ss_pred             EEEEECCCCeEEEEEcc-----CCCCcEEEEEccCCCcEEEEEeC-----------------CCeEEEEECCCCeEEEee
Q 004217          131 VKIIDCQTGSCLKVLHG-----HRRTPWVVRFHPLNPTIIASGSL-----------------DHEVRLWNASTAECIGSR  188 (767)
Q Consensus       131 VrVWDl~tg~~l~~L~g-----H~~~V~sLafsP~dg~lLaSgS~-----------------DGtVrIWDl~tg~~i~~l  188 (767)
                      |.++|..+++. ..+..     .......+++.+.+++++++-..                 ++.|..||..+++.....
T Consensus       103 i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~  181 (322)
T 2fp8_A          103 LSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL  181 (322)
T ss_dssp             EEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec
Confidence            88899776542 22211     11346789998834566666432                 367899998877654433


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEE--CCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          189 DFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       189 ~h~~~VtsVafSPdG~~LAsgS--dd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      ........++|+|+|++|.++.  .++|.+||+....... ...+..... ...++++++|+.+++..
T Consensus       182 ~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          182 KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-PGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-EEEEEECTTSCEEEEEE
T ss_pred             cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-CCCeEECCCCCEEEEec
Confidence            3223456799999999777665  3559999987532111 111111223 78899999998555543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.86  E-value=0.0011  Score=67.42  Aligned_cols=161  Identities=12%  Similarity=0.044  Sum_probs=103.7

Q ss_pred             CeEEEEeCCCCCCC---------CCCCCeEEEEECCCCCeEEEE-eCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccC
Q 004217           91 ESLHHLRPKYCPLS---------PPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL  160 (767)
Q Consensus        91 gsIrlWd~~t~~L~---------gH~~sVtsVaFSpDG~~LASg-s~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~  160 (767)
                      +.|+.+++......         .....+..++|+++++.|+.+ ..++.|.++|..++.....+.........+++++.
T Consensus        10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~   89 (267)
T 1npe_A           10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL   89 (267)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred             CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEec
Confidence            46777776544221         012346789999976655544 45789999999866544444333356889999984


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeEEEeecC-CCCeEEEEEcCCCCEEEEEEC----CcEEEEEcCCCccccCCeEEecCC
Q 004217          161 NPTIIASGSLDHEVRLWNASTAECIGSRDF-YRPIASIAFHASGELLAVASG----HKLYIWRYNMREETSSPRIVLRTR  235 (767)
Q Consensus       161 dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h-~~~VtsVafSPdG~~LAsgSd----d~V~VWDl~t~~~~~~~~~l~~h~  235 (767)
                      ++.++++-...+.|.++|+........... ......++++|++..|..+..    +.|..+++.......   ......
T Consensus        90 ~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~---~~~~~~  166 (267)
T 1npe_A           90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI---LAQDNL  166 (267)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE---EECTTC
T ss_pred             CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE---EEECCC
Confidence            566777777788999999875433222322 256789999997666655552    348888876433211   111233


Q ss_pred             CCeEEEEEccCCCeEEEEE
Q 004217          236 RSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       236 ~~VtsVaFSPDG~~LlaSg  254 (767)
                      .....++|++++.+|.++.
T Consensus       167 ~~P~gia~d~~~~~lyv~d  185 (267)
T 1npe_A          167 GLPNGLTFDAFSSQLCWVD  185 (267)
T ss_dssp             SCEEEEEEETTTTEEEEEE
T ss_pred             CCCcEEEEcCCCCEEEEEE
Confidence            4678999999988777664

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.74  E-value=1.4e-05  Score=86.71  Aligned_cols=127  Identities=16%  Similarity=0.102  Sum_probs=65.3

Q ss_pred             CCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCC--CeE
Q 004217          118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR--PIA  195 (767)
Q Consensus       118 DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~--~Vt  195 (767)
                      ++..|++++.|+.|+.||..+|+.+..+..  +.+.+..+.. ++.++++++.|+.|+.||..+++.+..+....  .+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence            678999999999999999999999988876  5555555556 66778888899999999999988766543221  010


Q ss_pred             -EEEEcCCCCEEEEEE-CCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          196 -SIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       196 -sVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                       +..+. ++..|++++ ++.|+.||.++++...   .+..+.    .+.++|++..+++++.
T Consensus        85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w---~~~~~~----~~~~~p~~~~v~~~~~  138 (369)
T 2hz6_A           85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQ---TLSSAF----ADSLSPSTSLLYLGRT  138 (369)
T ss_dssp             TCSCC------CCCCEEEEEEEEECCC-----------------------------EEEEEE
T ss_pred             cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEE---EecCCC----cccccccCCEEEEEec
Confidence             11111 234555555 4559999999998765   222222    2456677776666543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.74  E-value=0.00019  Score=80.29  Aligned_cols=132  Identities=11%  Similarity=-0.018  Sum_probs=95.2

Q ss_pred             CCCCeEEEEeCC-----CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEe----------CCCeEEEEECCC
Q 004217          117 PDGKTLASTHGD-----HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS----------LDHEVRLWNAST  181 (767)
Q Consensus       117 pDG~~LASgs~D-----GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS----------~DGtVrIWDl~t  181 (767)
                      ++++++++....     +.|.++|..+++.+.++..-..+  .+.++| ++++++.+.          .++.|.++|..+
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t  158 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVT  158 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence            477877766553     69999999999999888754444  899999 666665554          477999999999


Q ss_pred             CeEEEeecCC--------CCeEEEEEcCCCCEEEEEEC---CcEEEEEcCCCccccCCeEEecCC-------CCeEEEEE
Q 004217          182 AECIGSRDFY--------RPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTR-------RSLRAVHF  243 (767)
Q Consensus       182 g~~i~~l~h~--------~~VtsVafSPdG~~LAsgSd---d~V~VWDl~t~~~~~~~~~l~~h~-------~~VtsVaF  243 (767)
                      .+.+..+...        .....++|+|||++|+++..   +.|.+.|+.+.+.+.   .+.-..       ..-.-+.+
T Consensus       159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~---~I~v~g~~~~~p~g~~~~v~~  235 (426)
T 3c75_H          159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDR---MLDVPDCYHIFPASPTVFYMN  235 (426)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEE---EEECCSEEEEEEEETTEEEEE
T ss_pred             CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEE---EEEcCCceeeccCCCcEEEEE
Confidence            9988876432        34567899999999998873   349999999988654   121100       11223667


Q ss_pred             ccCCCeEEEEE
Q 004217          244 HPHAAPLLLTA  254 (767)
Q Consensus       244 SPDG~~LlaSg  254 (767)
                      ++||+.+++..
T Consensus       236 ~~dG~~~~V~~  246 (426)
T 3c75_H          236 CRDGSLARVDF  246 (426)
T ss_dssp             ETTSSEEEEEC
T ss_pred             cCCCCEEEEEC
Confidence            88888665554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.64  E-value=0.00057  Score=70.44  Aligned_cols=159  Identities=12%  Similarity=0.012  Sum_probs=107.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEE
Q 004217           81 RRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLa  156 (767)
                      +..|+.++.++.|..+|.. ++    ...+...+.++...+++. |..++.++.|..+|.. ++.+..+......+.++.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence            6677888888999999987 42    223344566677777776 5567788999999998 887777766666677787


Q ss_pred             EccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCC
Q 004217          157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTR  235 (767)
Q Consensus       157 fsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~  235 (767)
                      +.+ ++.+++..   +.|..|| .+++...... ....+.++..+++|.+.+...+++|..+|. +++...   ......
T Consensus       184 ~d~-~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~---~~~~~~  254 (330)
T 3hxj_A          184 IGK-DGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKW---RFKTGK  254 (330)
T ss_dssp             ECT-TCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEE---EEECSS
T ss_pred             EcC-CCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeE---EeeCCC
Confidence            876 66655543   8899999 7777666654 345678888898887666555677888874 333322   222233


Q ss_pred             CCeEEEEEccCCCeEE
Q 004217          236 RSLRAVHFHPHAAPLL  251 (767)
Q Consensus       236 ~~VtsVaFSPDG~~Ll  251 (767)
                      ..+.++.+.+++..++
T Consensus       255 ~~~~~~~~~~~g~l~v  270 (330)
T 3hxj_A          255 RIESSPVIGNTDTIYF  270 (330)
T ss_dssp             CCCSCCEECTTSCEEE
T ss_pred             CccccceEcCCCeEEE
Confidence            3344566666776443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.61  E-value=0.017  Score=60.17  Aligned_cols=173  Identities=12%  Similarity=0.102  Sum_probs=100.5

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCCC--CCCCCCCeEEEEECCCCCeEEEEeCC--CeEEEEECCCCeEEEEEc-cCC
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYCP--LSPPPRSTIAAAFSPDGKTLASTHGD--HTVKIIDCQTGSCLKVLH-GHR  149 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~~--L~gH~~sVtsVaFSpDG~~LASgs~D--GtVrVWDl~tg~~l~~L~-gH~  149 (767)
                      +++..++..+++-..++.|..||.....  ..........++++++|+++++....  ..|..+|..+++...... ...
T Consensus        37 ia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~  116 (306)
T 2p4o_A           37 LASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDA  116 (306)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTC
T ss_pred             EEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCc
Confidence            4444455544454466777777765431  11123468899999999976655432  247777878877543322 122


Q ss_pred             CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeE-EE-ee---------cCCCCeEEEEEcCCCCEEEEEEC--CcEEE
Q 004217          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IG-SR---------DFYRPIASIAFHASGELLAVASG--HKLYI  216 (767)
Q Consensus       150 ~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~-i~-~l---------~h~~~VtsVafSPdG~~LAsgSd--d~V~V  216 (767)
                      .....++..+ ++..+++-..++.|..+|..+++. +. ..         ..-...+.+  ++++++|.++..  +.|.+
T Consensus       117 ~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~  193 (306)
T 2p4o_A          117 IFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLR  193 (306)
T ss_dssp             SCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEE
T ss_pred             cccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEE
Confidence            3345566555 556666655688999999876532 21 10         111234555  889988777763  44999


Q ss_pred             EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEE
Q 004217          217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (767)
Q Consensus       217 WDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Ll  251 (767)
                      ||+...........+.. ......++++++|+.++
T Consensus       194 ~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~v  227 (306)
T 2p4o_A          194 IPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYG  227 (306)
T ss_dssp             EEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEE
T ss_pred             EEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEE
Confidence            99875211111112211 23456789999997433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.59  E-value=0.00089  Score=78.75  Aligned_cols=78  Identities=10%  Similarity=0.130  Sum_probs=59.0

Q ss_pred             EEEEECCCCCeEEEEeCCC-------------------eEEEEECCCCeEEEEEcc--CC-------CCcEEEEEccCCC
Q 004217          111 IAAAFSPDGKTLASTHGDH-------------------TVKIIDCQTGSCLKVLHG--HR-------RTPWVVRFHPLNP  162 (767)
Q Consensus       111 tsVaFSpDG~~LASgs~DG-------------------tVrVWDl~tg~~l~~L~g--H~-------~~V~sLafsP~dg  162 (767)
                      ..+++++++.+|+.+..++                   .|..+|.++|+.+..++.  |.       .....+.... ++
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG  324 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AG  324 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TT
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CC
Confidence            3578999999998887664                   599999999999887754  21       1223334444 55


Q ss_pred             ---cEEEEEeCCCeEEEEECCCCeEEEeec
Q 004217          163 ---TIIASGSLDHEVRLWNASTAECIGSRD  189 (767)
Q Consensus       163 ---~lLaSgS~DGtVrIWDl~tg~~i~~l~  189 (767)
                         ..++.++.+|.|.++|..+|+.+..+.
T Consensus       325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~  354 (677)
T 1kb0_A          325 KPRKVILHAPKNGFFFVLDRTNGKFISAKN  354 (677)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             cEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence               689999999999999999999887643

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.57  E-value=0.0096  Score=60.32  Aligned_cols=171  Identities=9%  Similarity=-0.011  Sum_probs=108.1

Q ss_pred             eEEEEEEcCCCEEE-EEeCCCeEEEEeCCCCC---CC-CCCCCeEEEEECCCCCeEEEEeC---CCeEEEEECCCCeEEE
Q 004217           72 QIFEAGRDARRGLA-SWVEAESLHHLRPKYCP---LS-PPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLK  143 (767)
Q Consensus        72 ~~~vA~sd~g~~La-Sgs~DgsIrlWd~~t~~---L~-gH~~sVtsVaFSpDG~~LASgs~---DGtVrVWDl~tg~~l~  143 (767)
                      +.-+++...++.|+ +-...+.|.+++.+...   +. ........++++|++..|+.+..   .+.|.+++++... ..
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~  159 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RR  159 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CE
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cE
Confidence            55566665444444 44456788888876432   11 12246789999997666655554   3688888876433 23


Q ss_pred             EE-ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC--CcEEEEEcC
Q 004217          144 VL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRYN  220 (767)
Q Consensus       144 ~L-~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~  220 (767)
                      .+ ...-.....++++++++.++++-...+.|..+|..................++..  +..|..+..  +.|.++|..
T Consensus       160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~  237 (267)
T 1npe_A          160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLA  237 (267)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred             EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCC
Confidence            33 2333467899999944556677777889999999865444333333445667654  455665653  459999998


Q ss_pred             CCccccCCeEEecC-CCCeEEEEEccCCC
Q 004217          221 MREETSSPRIVLRT-RRSLRAVHFHPHAA  248 (767)
Q Consensus       221 t~~~~~~~~~l~~h-~~~VtsVaFSPDG~  248 (767)
                      +++.+.   .+... ......+++.|++.
T Consensus       238 ~g~~~~---~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          238 ISKEMD---TFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTEEEE---EECCSSCCCCCCEEEECSCC
T ss_pred             CCCceE---EEccccccccceeeecCccC
Confidence            887644   33222 22467889998876

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.55  E-value=0.0028  Score=66.45  Aligned_cols=134  Identities=8%  Similarity=0.027  Sum_probs=93.6

Q ss_pred             CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEE--EEEccCCCcEEEEEeCCCeEEEEECCCCeEEE
Q 004217          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV--VRFHPLNPTIIASGSLDHEVRLWNASTAECIG  186 (767)
Q Consensus       109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~s--LafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~  186 (767)
                      -...+.|+ ++.++.+.+.+|.|+++|+++++.+..+ - ......  +.+.  ++.+++..-.++.+.+||..+.+.+.
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEE
Confidence            35788888 4667778888899999999999987776 2 233333  5553  46777777789999999999999999


Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCccccCCeEEecCC---CCeEEEEEccCCCeEEE
Q 004217          187 SRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTR---RSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       187 ~l~h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~~~~~l~~h~---~~VtsVaFSPDG~~Lla  252 (767)
                      ++.....-..++  ++++.|+.+. ++.|.++|..+.+...... ...+.   ..++.+.|. +|+ |.+
T Consensus       131 ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~-V~~~g~~v~~lNeLe~~-dG~-lya  195 (268)
T 3nok_A          131 TTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQ-VKLRGQPVELINELECA-NGV-IYA  195 (268)
T ss_dssp             EEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEE-CEETTEECCCEEEEEEE-TTE-EEE
T ss_pred             EEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEE-eCCCCcccccccccEEe-CCE-EEE
Confidence            987554434444  5677777765 4459999999887655211 11222   245677877 675 443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.54  E-value=0.0027  Score=66.40  Aligned_cols=136  Identities=10%  Similarity=0.102  Sum_probs=92.3

Q ss_pred             eEEEEECCCCCeEEEEeCCC--eEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe
Q 004217          110 TIAAAFSPDGKTLASTHGDH--TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS  187 (767)
Q Consensus       110 VtsVaFSpDG~~LASgs~DG--tVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~  187 (767)
                      ...+.|+ ++.++.+.+.+|  .|+++|+++++.+..+.-.. ........+.++.+++..-.++.+.+||..+.+.+.+
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            5789999 777777777776  89999999999988876433 3433333332456666666799999999999999999


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCccccCCeEEecCC---CCeEEEEEccCCCeEEE
Q 004217          188 RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTR---RSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       188 l~h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~~~~~l~~h~---~~VtsVaFSPDG~~Lla  252 (767)
                      +.....-..++  ++++.|+.+. ++.|.++|..+.+....... ....   ..++.+.|. +|+ +.+
T Consensus       123 i~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V-~~~g~~~~~lNELe~~-~G~-lya  186 (262)
T 3nol_A          123 FNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITV-TAHGEELPELNELEWV-DGE-IFA  186 (262)
T ss_dssp             EECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEEC-EETTEECCCEEEEEEE-TTE-EEE
T ss_pred             EECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEe-ccCCccccccceeEEE-CCE-EEE
Confidence            87544333444  5677666655 45599999998876552111 1111   345667886 665 443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.50  E-value=0.051  Score=59.46  Aligned_cols=165  Identities=10%  Similarity=0.005  Sum_probs=110.6

Q ss_pred             EeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEE-eCCCeEEEEECCCC----eEEEEEccCCCCcEEEEEc
Q 004217           87 WVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTG----SCLKVLHGHRRTPWVVRFH  158 (767)
Q Consensus        87 gs~DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASg-s~DGtVrVWDl~tg----~~l~~L~gH~~~V~sLafs  158 (767)
                      .+....|+..++....   +......+..|+|++.+..|+.. ...+.|+.+++...    .....+.........+++.
T Consensus        88 ~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD  167 (400)
T 3p5b_L           88 FTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  167 (400)
T ss_dssp             EEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEE
T ss_pred             EeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEE
Confidence            3445778888876552   33445678999999865555544 45788999998752    2333344344567889998


Q ss_pred             cCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEEC---CcEEEEEcCCCccccCCeEEecC
Q 004217          159 PLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRT  234 (767)
Q Consensus       159 P~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSd---d~V~VWDl~t~~~~~~~~~l~~h  234 (767)
                      +.+++++++-...+.|.+.|+........+. .......|+++|.+.+|+.+..   +.|...++.......   .....
T Consensus       168 ~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~---~~~~~  244 (400)
T 3p5b_L          168 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVTEN  244 (400)
T ss_dssp             TTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE---EECSS
T ss_pred             ecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE---EEECC
Confidence            7567777877788999999998665444433 3456789999997777666652   348888887544322   22233


Q ss_pred             CCCeEEEEEccCCCeEEEEE
Q 004217          235 RRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       235 ~~~VtsVaFSPDG~~LlaSg  254 (767)
                      -...+.|+|++++..|..+-
T Consensus       245 l~~P~glavd~~~~~lY~aD  264 (400)
T 3p5b_L          245 IQWPNGITLDLLSGRLYWVD  264 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEEEeCCCEEEEEE
Confidence            45778999999888777663

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.45  E-value=0.00097  Score=79.17  Aligned_cols=144  Identities=13%  Similarity=0.086  Sum_probs=89.7

Q ss_pred             CCCC-CeEEEEEC-CCCCeEEEEeC-C----CeEEEEECCCC-eEEE-EEccCCCCcEEEEEccCCCcEEEEEeCC----
Q 004217          105 PPPR-STIAAAFS-PDGKTLASTHG-D----HTVKIIDCQTG-SCLK-VLHGHRRTPWVVRFHPLNPTIIASGSLD----  171 (767)
Q Consensus       105 gH~~-sVtsVaFS-pDG~~LASgs~-D----GtVrVWDl~tg-~~l~-~L~gH~~~V~sLafsP~dg~lLaSgS~D----  171 (767)
                      +|.- .+...+|| |||++||.+.. +    .+|+++|+.++ +.+. .+..   ....+.|+| |++.|+....|    
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~Wsp-Dg~~l~y~~~d~~~~  245 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGP-DHTSLFYVTKDETLR  245 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECS-STTEEEEEEECTTCC
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEec-CCCEEEEEEECCCCC
Confidence            3443 68889999 99999886543 2    35999999998 6321 1211   134678999 77666666655    


Q ss_pred             -CeEEEEECCCCeE--EEee--cCCCCeEEEEEcCCCCEEEEEEC---Cc-EEEEEcCCCc-cccCCeEEe-cCCCCeEE
Q 004217          172 -HEVRLWNASTAEC--IGSR--DFYRPIASIAFHASGELLAVASG---HK-LYIWRYNMRE-ETSSPRIVL-RTRRSLRA  240 (767)
Q Consensus       172 -GtVrIWDl~tg~~--i~~l--~h~~~VtsVafSPdG~~LAsgSd---d~-V~VWDl~t~~-~~~~~~~l~-~h~~~Vts  240 (767)
                       ..|.++++.+++.  ...+  ........+.|+|||++|+..+.   .. |+++|+.++. .. ....+. .......+
T Consensus       246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~~~l~~~~~~~~~s  324 (751)
T 2xe4_A          246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN-TLEIVRPREKGVRYD  324 (751)
T ss_dssp             EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC-CEEESSCCCTTCCEE
T ss_pred             CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc-eeEEeecCCCCceEE
Confidence             3688889887642  2222  23345678899999998887662   22 9999998752 11 001222 23445566


Q ss_pred             EEEccCCCeEEEEE
Q 004217          241 VHFHPHAAPLLLTA  254 (767)
Q Consensus       241 VaFSPDG~~LlaSg  254 (767)
                      +.|+. |+.|+..+
T Consensus       325 ~~~~~-g~~l~~~t  337 (751)
T 2xe4_A          325 VQMHG-TSHLVILT  337 (751)
T ss_dssp             EEEET-TTEEEEEE
T ss_pred             Eeeee-CCEEEEEe
Confidence            66554 55555544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.45  E-value=0.0021  Score=76.26  Aligned_cols=180  Identities=11%  Similarity=-0.013  Sum_probs=104.7

Q ss_pred             eEEEEEE-cCCCEEEEE-eCC----CeEEEEeCCCC-CCC-CCC-CCeEEEEECCCCCeEEEEeCC-----CeEEEEECC
Q 004217           72 QIFEAGR-DARRGLASW-VEA----ESLHHLRPKYC-PLS-PPP-RSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQ  137 (767)
Q Consensus        72 ~~~vA~s-d~g~~LaSg-s~D----gsIrlWd~~t~-~L~-gH~-~sVtsVaFSpDG~~LASgs~D-----GtVrVWDl~  137 (767)
                      .....++ .+|+.|+-. ..+    ..|+++|+.++ +.. .+- .....++|+|||+.|+....|     ..|+++++.
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lg  255 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMG  255 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETT
T ss_pred             EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECC
Confidence            4456777 788777643 333    25999999887 532 111 123468999999988887765     368889988


Q ss_pred             CCeE--EEEEc-cCCCCcEEEEEccCCCcEEEEEe---CCCeEEEEECCCC--eE--EEeec-CCCCeEEEEEcCCCCEE
Q 004217          138 TGSC--LKVLH-GHRRTPWVVRFHPLNPTIIASGS---LDHEVRLWNASTA--EC--IGSRD-FYRPIASIAFHASGELL  206 (767)
Q Consensus       138 tg~~--l~~L~-gH~~~V~sLafsP~dg~lLaSgS---~DGtVrIWDl~tg--~~--i~~l~-h~~~VtsVafSPdG~~L  206 (767)
                      ++..  ...+. .+......+.|+| ++++|+..+   ....|.++|+.++  +.  ..... ......++.|+..+.++
T Consensus       256 t~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~  334 (751)
T 2xe4_A          256 KLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLV  334 (751)
T ss_dssp             SCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEE
T ss_pred             CCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEE
Confidence            7642  23333 2334456789999 777766654   2446888999875  23  22222 33455666655444444


Q ss_pred             EEEECC-----cEEEEEcCCCccccCCeE-EecCCCCeEEEEEccCCCeEEEEEe
Q 004217          207 AVASGH-----KLYIWRYNMREETSSPRI-VLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       207 AsgSdd-----~V~VWDl~t~~~~~~~~~-l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +.+..+     +|..+|+.+....   .. +..+...+.--.|++++..|+++..
T Consensus       335 ~~t~~~~a~~~~L~~~d~~~~~~~---~~~li~~~~~~~l~~~~~~~~~lv~~~~  386 (751)
T 2xe4_A          335 ILTNEGGAVNHKLLIAPRGQPSDW---SHVLVDHSEDVFMESIAVRSNYLVVAGR  386 (751)
T ss_dssp             EEECTTTCTTCEEEEEETTSTTCC---CCEEECCCSSEEEEEEEECSSEEEEEEE
T ss_pred             EEeCCCCCCCcEEEEEcCCCcccc---eeeEECCCCCcEEEEEEEECCEEEEEEE
Confidence            444433     2777777643211   12 3444443332334445666766654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.43  E-value=0.0014  Score=67.55  Aligned_cols=161  Identities=14%  Similarity=-0.001  Sum_probs=105.1

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEE
Q 004217           79 DARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~s  154 (767)
                      +....++.++.++.|..+|.. ++    +......+.++.+.+++.+++. +  +.|..+| .+++.+..+......+.+
T Consensus       145 ~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~~~~~~  219 (330)
T 3hxj_A          145 SEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGYWTVTR  219 (330)
T ss_dssp             CTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCSSCCCSC
T ss_pred             cCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccCCcceec
Confidence            334557778888899999987 42    2233445677788778875554 4  7899999 778877777666667888


Q ss_pred             EEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC-CCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEec
Q 004217          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-YRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLR  233 (767)
Q Consensus       155 LafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h-~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~  233 (767)
                      +...+ ++. +..++.++.|..+|. +++.+..+.. ...+..+.+.++|++.+...+++|..+|. +++...   ....
T Consensus       220 ~~~~~-~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~---~~~~  292 (330)
T 3hxj_A          220 PAISE-DGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKW---NFET  292 (330)
T ss_dssp             CEECT-TSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEE---EEEC
T ss_pred             eEECC-CCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEE---EEEc
Confidence            88887 555 445667888888884 5555555432 23344566676776555444557999985 444333   2223


Q ss_pred             CCCCeEEEEEccCCCeEE
Q 004217          234 TRRSLRAVHFHPHAAPLL  251 (767)
Q Consensus       234 h~~~VtsVaFSPDG~~Ll  251 (767)
                      ....+.++...++|..++
T Consensus       293 ~~~~~~~~~~d~~g~l~~  310 (330)
T 3hxj_A          293 GSWIIATPVIDENGTIYF  310 (330)
T ss_dssp             SSCCCSCCEECTTCCEEE
T ss_pred             CCccccceEEcCCCEEEE
Confidence            345677788878887444

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.43  E-value=0.00032  Score=81.15  Aligned_cols=163  Identities=11%  Similarity=0.105  Sum_probs=105.5

Q ss_pred             CCeEEEEeCCCCCCCCC---CCCeEEEEECCCCCeEEEEeCCC-------------------------------------
Q 004217           90 AESLHHLRPKYCPLSPP---PRSTIAAAFSPDGKTLASTHGDH-------------------------------------  129 (767)
Q Consensus        90 DgsIrlWd~~t~~L~gH---~~sVtsVaFSpDG~~LASgs~DG-------------------------------------  129 (767)
                      ++.+.++|..+.+....   .+.-..++++|||+++++.+.+.                                     
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i  253 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  253 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             CceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence            34688888887532100   11345678999999999888543                                     


Q ss_pred             -eEEEEECCC--CeE-EEEEccCCCCcEEEEEccCCCcEE-EEEeCCCeEEEEECCCCe------------EEEeecCCC
Q 004217          130 -TVKIIDCQT--GSC-LKVLHGHRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAE------------CIGSRDFYR  192 (767)
Q Consensus       130 -tVrVWDl~t--g~~-l~~L~gH~~~V~sLafsP~dg~lL-aSgS~DGtVrIWDl~tg~------------~i~~l~h~~  192 (767)
                       .|.|.|..+  ++. +..+.. .....++.++| |++++ +++..+.+|.++|+.+.+            ......-..
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~  331 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL  331 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS
T ss_pred             CcEEEEeCcccCCceeEEEEec-CCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC
Confidence             377777776  544 445532 23456799999 66654 455578999999999653            344555667


Q ss_pred             CeEEEEEcCCCCEEEEEE--CCcEEEEEcCCCc------c-ccCCeEEecCCCC-----eEEEEEccCCCeEEEEEe
Q 004217          193 PIASIAFHASGELLAVAS--GHKLYIWRYNMRE------E-TSSPRIVLRTRRS-----LRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       193 ~VtsVafSPdG~~LAsgS--dd~V~VWDl~t~~------~-~~~~~~l~~h~~~-----VtsVaFSPDG~~LlaSgs  255 (767)
                      ....++|+|+| ++.+..  ++.|.+||+.+..      . ......+..|-.+     -..+.++|||++|+++.+
T Consensus       332 gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          332 GPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             CEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             CcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            78899999999 777766  4559999997621      0 1111233333221     123356899998887765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.40  E-value=0.0032  Score=73.90  Aligned_cols=176  Identities=12%  Similarity=0.115  Sum_probs=109.2

Q ss_pred             EEEcCCCEEEEEeCCC-------------------eEEEEeCCCCCC------CCCC-------CCeEEEEECCCCC---
Q 004217           76 AGRDARRGLASWVEAE-------------------SLHHLRPKYCPL------SPPP-------RSTIAAAFSPDGK---  120 (767)
Q Consensus        76 A~sd~g~~LaSgs~Dg-------------------sIrlWd~~t~~L------~gH~-------~sVtsVaFSpDG~---  120 (767)
                      +.......++.+..++                   .|.-+|.+++++      ..|.       .......+..+|+   
T Consensus       236 a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~  315 (668)
T 1kv9_A          236 AYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRK  315 (668)
T ss_dssp             EEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEE
T ss_pred             EEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEE
Confidence            4444556666666554                   388888887742      2232       2333333334675   


Q ss_pred             eEEEEeCCCeEEEEECCCCeEEEEEccCCC-----------C-c------------------------EEEEEccCCCcE
Q 004217          121 TLASTHGDHTVKIIDCQTGSCLKVLHGHRR-----------T-P------------------------WVVRFHPLNPTI  164 (767)
Q Consensus       121 ~LASgs~DGtVrVWDl~tg~~l~~L~gH~~-----------~-V------------------------~sLafsP~dg~l  164 (767)
                      .|+.++.+|.++++|..+|+.+..++....           . +                        ..++++| +..+
T Consensus       316 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp-~~g~  394 (668)
T 1kv9_A          316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-GTGL  394 (668)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-TTTE
T ss_pred             EEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC-CCCE
Confidence            688999999999999999998754432110           0 0                        1257777 4444


Q ss_pred             EEEE------------------------------------eCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEE
Q 004217          165 IASG------------------------------------SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAV  208 (767)
Q Consensus       165 LaSg------------------------------------S~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAs  208 (767)
                      ++..                                    ..++.|..||+.+++.+.............+...+.++++
T Consensus       395 ~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~  474 (668)
T 1kv9_A          395 VYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ  474 (668)
T ss_dssp             EEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE
T ss_pred             EEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEE
Confidence            3321                                    1348899999999999888765555544455567788888


Q ss_pred             EECCc-EEEEEcCCCccccCCeEEecCCC-CeEEEEEccCCCeEEEEEe
Q 004217          209 ASGHK-LYIWRYNMREETSSPRIVLRTRR-SLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       209 gSdd~-V~VWDl~t~~~~~~~~~l~~h~~-~VtsVaFSPDG~~LlaSgs  255 (767)
                      ++.++ |++||.++++.+.   .+..... .-.-+.+..+|+..++.+.
T Consensus       475 g~~dg~l~a~d~~tG~~l~---~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          475 GTAAGQMHAYSADKGEALW---QFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             ECTTSEEEEEETTTCCEEE---EEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             ECCcccchhhhhhcChhhe---EecCCCCcccCceEEEECCEEEEEEEe
Confidence            87555 9999999998765   2222211 1123445567875555554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.38  E-value=0.0032  Score=66.00  Aligned_cols=138  Identities=12%  Similarity=0.063  Sum_probs=92.6

Q ss_pred             CeEEEEECCCCCeEEEEeC--CCeEEEEECCCCeEEEEEccCC-CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEE
Q 004217          109 STIAAAFSPDGKTLASTHG--DHTVKIIDCQTGSCLKVLHGHR-RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI  185 (767)
Q Consensus       109 sVtsVaFSpDG~~LASgs~--DGtVrVWDl~tg~~l~~L~gH~-~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i  185 (767)
                      ....++|++|+.++++.+.  +..|+++|+.+++.+..+.-.. .....+.+.  ++.++++.-.++.+.++|..+.+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            3689999998755555443  5799999999999888775222 223345554  3566677777899999999999999


Q ss_pred             EeecCC-CCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCccccCCeEEecC---CCCeEEEEEccCCCeEEEE
Q 004217          186 GSRDFY-RPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRT---RRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       186 ~~l~h~-~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~~~~~l~~h---~~~VtsVaFSPDG~~LlaS  253 (767)
                      ..+... ..  ...+++||+.++++. ++.|.++|..+.+...... ....   -..++.+.|. +|. +.+.
T Consensus       100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~-Vg~~~~p~~~~nele~~-dg~-lyvn  167 (266)
T 2iwa_A          100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHN-VKYNGHRVIRLNELEYI-NGE-VWAN  167 (266)
T ss_dssp             EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEE-CEETTEECCCEEEEEEE-TTE-EEEE
T ss_pred             EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEE-ECCCCcccccceeEEEE-CCE-EEEe
Confidence            887644 22  234556787666655 3449999999887654111 1111   1246788888 664 4443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.36  E-value=0.021  Score=67.63  Aligned_cols=173  Identities=8%  Similarity=0.003  Sum_probs=119.2

Q ss_pred             EEcCCCEEEEEeCCCeEEEEeCCCCCCC------------CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEE
Q 004217           77 GRDARRGLASWVEAESLHHLRPKYCPLS------------PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV  144 (767)
Q Consensus        77 ~sd~g~~LaSgs~DgsIrlWd~~t~~L~------------gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~  144 (767)
                      ..+....|+.|+.++-|..|+..++++.            -....|.++...++|++|..|+.++-|.+||..+++....
T Consensus       363 ~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~  442 (795)
T 4a2l_A          363 VEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENF  442 (795)
T ss_dssp             EECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             EECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence            3455667888998888999998765321            1235799999998888567778777899999988764432


Q ss_pred             Ec----cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-------CCCCeEEEEEcCCCCEEEEEECCc
Q 004217          145 LH----GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-------FYRPIASIAFHASGELLAVASGHK  213 (767)
Q Consensus       145 L~----gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-------h~~~VtsVafSPdG~~LAsgSdd~  213 (767)
                      ..    .....|.++...+ ++++.+.. . +.+.+||..+++......       ....|.++..+++|++.+... ++
T Consensus       443 ~~~~~~l~~~~v~~i~~d~-~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G  518 (795)
T 4a2l_A          443 NQRNSQLVNENVYAILPDG-EGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG  518 (795)
T ss_dssp             CTTTSCCSCSCEEEEEECS-SSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC
T ss_pred             ecCCCCcCCCeeEEEEECC-CCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cc
Confidence            21    1345788998887 66666554 3 458999998876544321       235789999999998766554 77


Q ss_pred             EEEEEcCCCccccCC---eEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          214 LYIWRYNMREETSSP---RIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       214 V~VWDl~t~~~~~~~---~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      |..||..+.+. ...   .........|.++...++|...+.+.
T Consensus       519 l~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~  561 (795)
T 4a2l_A          519 LSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR  561 (795)
T ss_dssp             EEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES
T ss_pred             eEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC
Confidence            99999876643 100   00011345799999999999666553

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.36  E-value=0.014  Score=63.61  Aligned_cols=165  Identities=9%  Similarity=-0.029  Sum_probs=110.1

Q ss_pred             EeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeE-EEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCC
Q 004217           87 WVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNP  162 (767)
Q Consensus        87 gs~DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~L-ASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg  162 (767)
                      .+....|+..++....   +......+..++|++.+..| ++-...+.|+.++++.+.....+.........+++.+.++
T Consensus        92 ~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g  171 (386)
T 3v65_B           92 FANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD  171 (386)
T ss_dssp             EECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTT
T ss_pred             eecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCC
Confidence            3445678888887653   22334568899999855555 4545678999999887654444443334567888987567


Q ss_pred             cEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEEC---CcEEEEEcCCCccccCCeEEecCCCCe
Q 004217          163 TIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRRSL  238 (767)
Q Consensus       163 ~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSd---d~V~VWDl~t~~~~~~~~~l~~h~~~V  238 (767)
                      +++++-...+.|.+.++........+. .......++++|.+.+|+.+..   +.|..+++.......   .....-...
T Consensus       172 ~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~---~~~~~~~~P  248 (386)
T 3v65_B          172 KLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI---IADTHLFWP  248 (386)
T ss_dssp             EEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---EECSSCSCE
T ss_pred             eEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE---EEECCCCCe
Confidence            777777778899999987554333332 3356789999998777666653   348888876543211   222334457


Q ss_pred             EEEEEccCCCeEEEEE
Q 004217          239 RAVHFHPHAAPLLLTA  254 (767)
Q Consensus       239 tsVaFSPDG~~LlaSg  254 (767)
                      +.|+|+|++..|..+-
T Consensus       249 nGlavd~~~~~lY~aD  264 (386)
T 3v65_B          249 NGLTIDYAGRRMYWVD  264 (386)
T ss_dssp             EEEEEEGGGTEEEEEE
T ss_pred             eeEEEeCCCCEEEEEE
Confidence            8999999888777663

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.35  E-value=0.035  Score=58.42  Aligned_cols=163  Identities=10%  Similarity=0.005  Sum_probs=103.9

Q ss_pred             CCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEE-EEeCCCeEEEEECCC----CeEEEEEccCCCCcEEEEEccC
Q 004217           89 EAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQT----GSCLKVLHGHRRTPWVVRFHPL  160 (767)
Q Consensus        89 ~DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LA-Sgs~DGtVrVWDl~t----g~~l~~L~gH~~~V~sLafsP~  160 (767)
                      ....|+..++....   +........+++|+++++.|+ +-..++.|..+|+.+    ......+...-..+..+++.+.
T Consensus         8 ~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~   87 (316)
T 1ijq_A            8 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI   87 (316)
T ss_dssp             CBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             CCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence            34557777776542   223345678999998665554 445568999999876    2222233333345678999874


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEEC---CcEEEEEcCCCccccCCeEEecCCC
Q 004217          161 NPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRR  236 (767)
Q Consensus       161 dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSd---d~V~VWDl~t~~~~~~~~~l~~h~~  236 (767)
                      +++++++-...+.|.+.|.........+. .......++++|.+.+|+.+..   ++|...++.......   .....-.
T Consensus        88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~---~~~~~~~  164 (316)
T 1ijq_A           88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVTENIQ  164 (316)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE---EECSSCS
T ss_pred             CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE---EEECCCC
Confidence            66777777788999999987654433332 3456789999997776655552   348888876443211   1222345


Q ss_pred             CeEEEEEccCCCeEEEEE
Q 004217          237 SLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       237 ~VtsVaFSPDG~~LlaSg  254 (767)
                      ..+.|+|++++..|..+-
T Consensus       165 ~P~gla~d~~~~~lY~~D  182 (316)
T 1ijq_A          165 WPNGITLDLLSGRLYWVD  182 (316)
T ss_dssp             CEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEeccCCEEEEEE
Confidence            678999999888777664

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.34  E-value=0.0047  Score=72.74  Aligned_cols=75  Identities=11%  Similarity=0.174  Sum_probs=56.3

Q ss_pred             EEEECCCCCeEEEEeCCCe-------------------EEEEECCCCeEEEEEcc--CC-------CCcEEEEEccCCCc
Q 004217          112 AAAFSPDGKTLASTHGDHT-------------------VKIIDCQTGSCLKVLHG--HR-------RTPWVVRFHPLNPT  163 (767)
Q Consensus       112 sVaFSpDG~~LASgs~DGt-------------------VrVWDl~tg~~l~~L~g--H~-------~~V~sLafsP~dg~  163 (767)
                      .+++++++.+|+.+..++.                   |..||.++|+.+..++.  |.       ..+....... +++
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~  317 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGK  317 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCc
Confidence            5789998899999988764                   99999999999988764  21       1121222222 343


Q ss_pred             ---EEEEEeCCCeEEEEECCCCeEEEe
Q 004217          164 ---IIASGSLDHEVRLWNASTAECIGS  187 (767)
Q Consensus       164 ---lLaSgS~DGtVrIWDl~tg~~i~~  187 (767)
                         .++.++.+|.++++|.++|+.+..
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~  344 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELLSA  344 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEecc
Confidence               788899999999999999998754

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.28  E-value=0.026  Score=60.56  Aligned_cols=163  Identities=9%  Similarity=-0.035  Sum_probs=107.2

Q ss_pred             CCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEE-EEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcE
Q 004217           89 EAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI  164 (767)
Q Consensus        89 ~DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LA-Sgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~l  164 (767)
                      ....|+..++....   +......+..++|++....|+ +-...+.|+.++++.+.....+.........+++.+.++++
T Consensus        51 ~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l  130 (349)
T 3v64_C           51 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL  130 (349)
T ss_dssp             CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred             cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeE
Confidence            44557767765542   222334588999998555554 44567899999988765444444334556789998756777


Q ss_pred             EEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEEC---CcEEEEEcCCCccccCCeEEecCCCCeEE
Q 004217          165 IASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRRSLRA  240 (767)
Q Consensus       165 LaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSd---d~V~VWDl~t~~~~~~~~~l~~h~~~Vts  240 (767)
                      +++-...+.|.+.++........+. .......++++|.+.+|+.+..   ++|..++++......   .....-...+.
T Consensus       131 y~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~---~~~~~~~~PnG  207 (349)
T 3v64_C          131 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI---IADTHLFWPNG  207 (349)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---SCCSSCSCEEE
T ss_pred             EEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE---EEECCCCCcce
Confidence            7877778899999987654333332 3356789999997776666653   348888877543211   11223445789


Q ss_pred             EEEccCCCeEEEEE
Q 004217          241 VHFHPHAAPLLLTA  254 (767)
Q Consensus       241 VaFSPDG~~LlaSg  254 (767)
                      |+|+|++..|..+-
T Consensus       208 la~d~~~~~lY~aD  221 (349)
T 3v64_C          208 LTIDYAGRRMYWVD  221 (349)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEEeCCCCEEEEEE
Confidence            99999888777663

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.23  E-value=0.05  Score=56.21  Aligned_cols=135  Identities=13%  Similarity=0.068  Sum_probs=90.5

Q ss_pred             CCeEEEEECCCCCeEEEEeCCC--eEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEE
Q 004217          108 RSTIAAAFSPDGKTLASTHGDH--TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI  185 (767)
Q Consensus       108 ~sVtsVaFSpDG~~LASgs~DG--tVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i  185 (767)
                      .-...+.|+. +.++.+.+.+|  .|+++|+++++.+..+.-... .........+++++...-.++.+.+||..+.+.+
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence            3467899986 56666666654  899999999999888754332 3333233324667777778999999999999999


Q ss_pred             EeecCCCCeEEEEEcCCCCEEEEEE-CCcEEEEEcCCCccccCCeEEecCC---CCeEEEEEccCCC
Q 004217          186 GSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTR---RSLRAVHFHPHAA  248 (767)
Q Consensus       186 ~~l~h~~~VtsVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~~~~~l~~h~---~~VtsVaFSPDG~  248 (767)
                      .++.....-..++  +++..|+++. ++.|.++|..+.+...... ...+.   ..++.+.|. +|+
T Consensus        99 ~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~-V~~~g~~~~~lNeLe~~-~G~  161 (243)
T 3mbr_X           99 ARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIK-VTAGGRPLDNLNELEWV-NGE  161 (243)
T ss_dssp             EEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEE-CEETTEECCCEEEEEEE-TTE
T ss_pred             EEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEE-EccCCcccccceeeEEe-CCE
Confidence            9987655444555  4666555554 4459999999887655211 11121   345667766 565

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.15  E-value=0.009  Score=62.40  Aligned_cols=140  Identities=8%  Similarity=0.071  Sum_probs=91.2

Q ss_pred             CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc--------------------CCCCcEEEEEccCCCcEEEEE
Q 004217          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG--------------------HRRTPWVVRFHPLNPTIIASG  168 (767)
Q Consensus       109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g--------------------H~~~V~sLafsP~dg~lLaSg  168 (767)
                      ...+++|+++|++++++..++.|..||..+++.. .+..                    ....+..+++.+.+++ |+.+
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~   97 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV   97 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence            4567889999998888888999999998776533 2321                    0135788999873444 4444


Q ss_pred             eCCCeEEEEECCCCeEEEeec-----CCCCeEEEEEcC-CCCEEEEEEC------------------CcEEEEEcCCCcc
Q 004217          169 SLDHEVRLWNASTAECIGSRD-----FYRPIASIAFHA-SGELLAVASG------------------HKLYIWRYNMREE  224 (767)
Q Consensus       169 S~DGtVrIWDl~tg~~i~~l~-----h~~~VtsVafSP-dG~~LAsgSd------------------d~V~VWDl~t~~~  224 (767)
                      ...+.|..+|..+++......     .......+++++ +|++.++...                  ++|..||..+++.
T Consensus        98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            455568889987654322211     123578899999 9987766532                  3488888776653


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       225 ~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      ..    ........+.|+|+|||++|.++.
T Consensus       178 ~~----~~~~~~~p~gia~~~dg~~lyv~d  203 (322)
T 2fp8_A          178 TL----LLKELHVPGGAEVSADSSFVLVAE  203 (322)
T ss_dssp             EE----EEEEESCCCEEEECTTSSEEEEEE
T ss_pred             EE----eccCCccCcceEECCCCCEEEEEe
Confidence            22    112223456899999999766653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.14  E-value=0.069  Score=63.18  Aligned_cols=178  Identities=9%  Similarity=0.010  Sum_probs=120.7

Q ss_pred             EEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCC----------CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE
Q 004217           73 IFEAGRDARRGLASWVEAESLHHLRPKYCPLS----------PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL  142 (767)
Q Consensus        73 ~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~----------gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l  142 (767)
                      +.....+....|+.|+.++-|..|+....++.          -....|.++...++|++. .|+.++-|..||..+++..
T Consensus       312 i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~  390 (795)
T 4a2l_A          312 VRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFT  390 (795)
T ss_dssp             EEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEE
T ss_pred             EEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEE
Confidence            33344566777888998888999987654321          123469999999888644 5777777999998877644


Q ss_pred             EEEcc--------CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-----CCCCeEEEEEcCCCCEEEEE
Q 004217          143 KVLHG--------HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-----FYRPIASIAFHASGELLAVA  209 (767)
Q Consensus       143 ~~L~g--------H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-----h~~~VtsVafSPdG~~LAsg  209 (767)
                      .....        ....|.++...+ ++++|..|+.++.|.+||..+++......     ....|.++..+++|++.+..
T Consensus       391 ~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt  469 (795)
T 4a2l_A          391 SYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT  469 (795)
T ss_dssp             EECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE
T ss_pred             EEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe
Confidence            32211        135688888877 67746667777889999998877554321     24578999999999866555


Q ss_pred             ECCcEEEEEcCCCccccCCeE---EecCCCCeEEEEEccCCCeEEEE
Q 004217          210 SGHKLYIWRYNMREETSSPRI---VLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       210 Sdd~V~VWDl~t~~~~~~~~~---l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      . ++|.+||..+++.......   ..-....|.++...++|...+.+
T Consensus       470 ~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt  515 (795)
T 4a2l_A          470 L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG  515 (795)
T ss_dssp             S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE
T ss_pred             c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe
Confidence            4 7799999877653220000   01123678999999999865554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.14  E-value=0.016  Score=66.98  Aligned_cols=160  Identities=9%  Similarity=0.098  Sum_probs=97.7

Q ss_pred             CeEEEEeCCCCC------CCCCC--------CCeEEEEEC-CCCC---eEEEEeCCCeEEEEECCCCeEEEEEccCCC--
Q 004217           91 ESLHHLRPKYCP------LSPPP--------RSTIAAAFS-PDGK---TLASTHGDHTVKIIDCQTGSCLKVLHGHRR--  150 (767)
Q Consensus        91 gsIrlWd~~t~~------L~gH~--------~sVtsVaFS-pDG~---~LASgs~DGtVrVWDl~tg~~l~~L~gH~~--  150 (767)
                      +.|.-+|.++++      +..|.        ..+. +... .+|+   .|+.++.+|.++++|.++|+.+..+.....  
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            577888887763      22232        1222 2332 4674   788899999999999999998876643310  


Q ss_pred             ----------C-c--------------------------------EEEEEccCCCcEEEEEe------------------
Q 004217          151 ----------T-P--------------------------------WVVRFHPLNPTIIASGS------------------  169 (767)
Q Consensus       151 ----------~-V--------------------------------~sLafsP~dg~lLaSgS------------------  169 (767)
                                . +                                ..++++|..+.+++...                  
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                      0 0                                13456663333333221                  


Q ss_pred             --------------CCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecC
Q 004217          170 --------------LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRT  234 (767)
Q Consensus       170 --------------~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h  234 (767)
                                    .++.|..||+.+++.+........+..-.....+.+++.++.++ |+.||.++++.+.   .+.. 
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW---~~~~-  525 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELW---KFQT-  525 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEE---EEEC-
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEE---EecC-
Confidence                          36889999999999887765443332222223466777777554 9999999999876   2222 


Q ss_pred             CCCe--EEEEEccCCCeEEEEEe
Q 004217          235 RRSL--RAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       235 ~~~V--tsVaFSPDG~~LlaSgs  255 (767)
                      ...+  .-+.|..+|+.+++...
T Consensus       526 ~~g~~a~P~~y~~~G~qYv~~~~  548 (582)
T 1flg_A          526 GSGIVSPPITWEQDGEQYLGVTV  548 (582)
T ss_dssp             SSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CCCcccCceEEEECCEEEEEEEc
Confidence            2222  23667788886655443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.13  E-value=0.085  Score=56.48  Aligned_cols=177  Identities=11%  Similarity=0.013  Sum_probs=111.1

Q ss_pred             eEEEEEEcC-CCEEEEEeCCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCCeE-EEEeCCCeEEEEECCCCeEEEEE
Q 004217           72 QIFEAGRDA-RRGLASWVEAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        72 ~~~vA~sd~-g~~LaSgs~DgsIrlWd~~t~~L----~gH~~sVtsVaFSpDG~~L-ASgs~DGtVrVWDl~tg~~l~~L  145 (767)
                      +..+++... +...++-...+.|..++......    .........+++.+.+..| ++-...+.|.+.+++.......+
T Consensus        75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~  154 (349)
T 3v64_C           75 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL  154 (349)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE
Confidence            445555533 44444555678898888876521    1223456789999855444 55556789999998765433344


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEEeCC-CeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEEC--CcEEEEEcCC
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASGSLD-HEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HKLYIWRYNM  221 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSgS~D-GtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~t  221 (767)
                      ...-.....++++|.++.++++-..+ +.|..+++.......... .-...+.++|+|++..|..+..  +.|..+|+..
T Consensus       155 ~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          155 WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            44445678999999566667766666 889888887543333322 3345789999998887777763  3499999875


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       222 ~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      .....   ...........+++. . ..+..+
T Consensus       235 ~~~~~---~~~~~~~~P~giav~-~-~~ly~t  261 (349)
T 3v64_C          235 SHRKA---VISQGLPHPFAITVF-E-DSLYWT  261 (349)
T ss_dssp             CSCEE---EECSSCSSEEEEEEE-T-TEEEEE
T ss_pred             CceEE---EEeCCCCCceEEEEE-C-CEEEEe
Confidence            43211   222334456778873 3 345444

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.11  E-value=0.015  Score=66.88  Aligned_cols=136  Identities=10%  Similarity=0.040  Sum_probs=87.3

Q ss_pred             CCCC---eEEEEeCCCeEEEEECCCCeEEEEEccCC-------------CCc--------------------------EE
Q 004217          117 PDGK---TLASTHGDHTVKIIDCQTGSCLKVLHGHR-------------RTP--------------------------WV  154 (767)
Q Consensus       117 pDG~---~LASgs~DGtVrVWDl~tg~~l~~L~gH~-------------~~V--------------------------~s  154 (767)
                      .+|+   .++.++.+|.+.++|.++|+.+..++-..             .++                          ..
T Consensus       311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  390 (571)
T 2ad6_A          311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV  390 (571)
T ss_dssp             ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred             cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence            4774   57788999999999999999887664221             111                          23


Q ss_pred             EEEccCCCcEEEEEe-------------------------------------CCCeEEEEECCCCeEEEeecCCCCeEEE
Q 004217          155 VRFHPLNPTIIASGS-------------------------------------LDHEVRLWNASTAECIGSRDFYRPIASI  197 (767)
Q Consensus       155 LafsP~dg~lLaSgS-------------------------------------~DGtVrIWDl~tg~~i~~l~h~~~VtsV  197 (767)
                      ++|+| +..+++...                                     .++.|..||+.+++.+..+.....+...
T Consensus       391 ~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~  469 (571)
T 2ad6_A          391 DSYDP-ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGG  469 (571)
T ss_dssp             CEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSB
T ss_pred             ceECC-CCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccce
Confidence            57788 445554432                                     3578999999999998887654444433


Q ss_pred             EEcCCCCEEEEEECC-cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          198 AFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       198 afSPdG~~LAsgSdd-~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .+...+..+++++.+ .|+.||.++++.+.  ....+....-.-+.+..+|+.++.+..
T Consensus       470 ~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw--~~~~~~~~~~~p~~~~~~G~~yv~~~~  526 (571)
T 2ad6_A          470 TLYTKGGLVWYATLDGYLKALDNKDGKELW--NFKMPSGGIGSPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             CEEETTTEEEEECTTSEEEEEETTTCCEEE--EEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             eEEECCCEEEEEcCCCeEEEEECCCCCEEE--EEeCCCCcEeeeEEEEECCEEEEEEEC
Confidence            333445666667754 49999999998766  111222111223446678886665544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.04  E-value=0.0058  Score=64.89  Aligned_cols=140  Identities=6%  Similarity=-0.059  Sum_probs=90.8

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC------CC-------CCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           81 RRGLASWVEAESLHHLRPKYCPLS------PP-------PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t~~L~------gH-------~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      +..++.++.++.|..+|.+++++.      ..       ...+.+ ....++..|+.++.++.|..+|.++|+.+..+..
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            566677777888888888776321      11       122322 1222456788888999999999999998877765


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCe------EEEEEcCCCCEEEEEEC-CcEEEEEcC
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI------ASIAFHASGELLAVASG-HKLYIWRYN  220 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~V------tsVafSPdG~~LAsgSd-d~V~VWDl~  220 (767)
                      ...........   +..++.++.++.|..+|..+++.+........+      ...... + ..++++.. +.|..+|..
T Consensus       132 ~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~-~~v~~g~~~g~l~~~d~~  206 (376)
T 3q7m_A          132 AGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-F-GAAVVGGDNGRVSAVLME  206 (376)
T ss_dssp             SSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-T-TEEEECCTTTEEEEEETT
T ss_pred             CCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-C-CEEEEEcCCCEEEEEECC
Confidence            43322222332   356777888999999999999988876543332      122222 3 45566664 459999999


Q ss_pred             CCcccc
Q 004217          221 MREETS  226 (767)
Q Consensus       221 t~~~~~  226 (767)
                      +++...
T Consensus       207 tG~~~w  212 (376)
T 3q7m_A          207 QGQMIW  212 (376)
T ss_dssp             TCCEEE
T ss_pred             CCcEEE
Confidence            887654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.02  E-value=0.19  Score=60.32  Aligned_cols=164  Identities=10%  Similarity=0.005  Sum_probs=109.0

Q ss_pred             EeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCe-EEEEeCCCeEEEEECCCC----eEEEEEccCCCCcEEEEEc
Q 004217           87 WVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKT-LASTHGDHTVKIIDCQTG----SCLKVLHGHRRTPWVVRFH  158 (767)
Q Consensus        87 gs~DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~-LASgs~DGtVrVWDl~tg----~~l~~L~gH~~~V~sLafs  158 (767)
                      .+....|+..++....   +......+.+|+|++.... +++-...+.|+.+++...    .....+......+..|++.
T Consensus       400 ~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD  479 (791)
T 3m0c_C          400 FTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  479 (791)
T ss_dssp             EECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             cccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence            3455667777776542   3344567889999985444 455555788999998753    2233444345567789998


Q ss_pred             cCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEEC---CcEEEEEcCCCccccCCeEEecC
Q 004217          159 PLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRT  234 (767)
Q Consensus       159 P~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSd---d~V~VWDl~t~~~~~~~~~l~~h  234 (767)
                      +.+++++++-...+.|.+.++........+. .......|+++|.+.+|+.+..   ++|.+.++.......   .....
T Consensus       480 ~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~---lv~~~  556 (791)
T 3m0c_C          480 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVTEN  556 (791)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE---EECSS
T ss_pred             ecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE---EEeCC
Confidence            8566788888888999999998655443332 4456889999998776666652   348888887554322   22333


Q ss_pred             CCCeEEEEEccCCCeEEEE
Q 004217          235 RRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       235 ~~~VtsVaFSPDG~~LlaS  253 (767)
                      -...+.|++++.+..|..+
T Consensus       557 l~~P~GLavD~~~~~LYwa  575 (791)
T 3m0c_C          557 IQWPNGITLDLLSGRLYWV  575 (791)
T ss_dssp             CSCEEEEEEETTTTEEEEE
T ss_pred             CCCceEEEEecCCCeEEEE
Confidence            4578899999888877766

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.98  E-value=0.027  Score=62.38  Aligned_cols=148  Identities=12%  Similarity=0.034  Sum_probs=97.1

Q ss_pred             eEEEEEEc-CCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEEeCC-C----eEEEEECCCCeEE
Q 004217           72 QIFEAGRD-ARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGD-H----TVKIIDCQTGSCL  142 (767)
Q Consensus        72 ~~~vA~sd-~g~~LaSgs~DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASgs~D-G----tVrVWDl~tg~~l  142 (767)
                      +..+++.. ++..|+.....+.|+.+|.+..+   +.........|+|+++|++|+.+... +    .+.+++. .+...
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~  217 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFK  217 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSC
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCcee
Confidence            55566664 34556655555889999987753   23345568899999999966666542 1    3444443 23211


Q ss_pred             --EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe--ecCCCCeEEEEEcCCCCEEEEEEC--CcEEE
Q 004217          143 --KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFHASGELLAVASG--HKLYI  216 (767)
Q Consensus       143 --~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~--l~h~~~VtsVafSPdG~~LAsgSd--d~V~V  216 (767)
                        ..+.. ......++++|.++.++++-..++.|..+|..++.....  .........++|+|+|++|..+..  +.|..
T Consensus       218 ~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~  296 (430)
T 3tc9_A          218 VITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR  296 (430)
T ss_dssp             SEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence              22321 234567889996677777777789999999987765332  223345778999999997776653  44999


Q ss_pred             EEcCC
Q 004217          217 WRYNM  221 (767)
Q Consensus       217 WDl~t  221 (767)
                      +|.+.
T Consensus       297 ~~~d~  301 (430)
T 3tc9_A          297 SDYDW  301 (430)
T ss_dssp             EEEET
T ss_pred             EeCCc
Confidence            88764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.97  E-value=0.069  Score=58.06  Aligned_cols=177  Identities=11%  Similarity=0.012  Sum_probs=109.8

Q ss_pred             eEEEEEEc-CCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeE-EEEeCCCeEEEEECCCCeEEEEE
Q 004217           72 QIFEAGRD-ARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        72 ~~~vA~sd-~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~L-ASgs~DGtVrVWDl~tg~~l~~L  145 (767)
                      +..+++.. ++...++-...+.|..++.....    +.........+++++.+..| ++-...+.|.+.+++.......+
T Consensus       118 ~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~  197 (386)
T 3v65_B          118 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL  197 (386)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE
T ss_pred             cEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee
Confidence            44455553 34444455567888888887552    11222345678888755544 55555778999998755444444


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEEeCC-CeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEEC--CcEEEEEcCC
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASGSLD-HEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HKLYIWRYNM  221 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSgS~D-GtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~t  221 (767)
                      ...-.....++++|.++.++++-..+ +.|..+++.......... .-...+.|+|+|++..|..+..  +.|..+|+..
T Consensus       198 ~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          198 WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred             cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            44446788999999566666665555 788888887544333332 3345789999998887777763  3499999875


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       222 ~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      .....   ...........|++.  +..++.+
T Consensus       278 ~~~~~---~~~~~~~~P~giav~--~~~ly~t  304 (386)
T 3v65_B          278 SHRKA---VISQGLPHPFAITVF--EDSLYWT  304 (386)
T ss_dssp             CSCEE---EECSSCSSEEEEEEE--TTEEEEE
T ss_pred             CeeEE---EEECCCCCceEEEEE--CCEEEEe
Confidence            43211   222234456778873  3345544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.90  E-value=0.0047  Score=65.66  Aligned_cols=132  Identities=11%  Similarity=0.041  Sum_probs=86.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC--CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc-CCCCcEEEEE
Q 004217           81 RRGLASWVEAESLHHLRPKYCPLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG-HRRTPWVVRF  157 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t~~L~--gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g-H~~~V~sLaf  157 (767)
                      +..++.++.++.+..+|..++++.  ........+..  ++..|+.++.++.|..+|..+|+.+..... ....+.....
T Consensus       239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~  316 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL  316 (376)
T ss_dssp             TTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE
T ss_pred             CCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE
Confidence            456777778888999998876422  11223444444  466788888899999999999998877652 2223333333


Q ss_pred             ccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC-CCCeEEEEEcCCCCEEEEEEC-CcEEEEE
Q 004217          158 HPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-YRPIASIAFHASGELLAVASG-HKLYIWR  218 (767)
Q Consensus       158 sP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h-~~~VtsVafSPdG~~LAsgSd-d~V~VWD  218 (767)
                      .   +..++.++.+|.|.++|..+++.+..... ...+.......+ ..|++++. +.|+.||
T Consensus       317 ~---~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~-~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          317 Y---NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAAD-GKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             E---TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEET-TEEEEEBTTSCEEEEE
T ss_pred             E---CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEEC-CEEEEEeCCCEEEEEe
Confidence            2   46788888999999999999998877653 333322111123 45555664 4588886

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.89  E-value=0.038  Score=64.22  Aligned_cols=160  Identities=10%  Similarity=0.051  Sum_probs=96.5

Q ss_pred             eEEEEeCCCCCC------CCCC--------CCeEEEEEC-CCC---CeEEEEeCCCeEEEEECCCCeEEEEEccCC----
Q 004217           92 SLHHLRPKYCPL------SPPP--------RSTIAAAFS-PDG---KTLASTHGDHTVKIIDCQTGSCLKVLHGHR----  149 (767)
Q Consensus        92 sIrlWd~~t~~L------~gH~--------~sVtsVaFS-pDG---~~LASgs~DGtVrVWDl~tg~~l~~L~gH~----  149 (767)
                      .|.-+|.+++++      ..|.        ..+. +... .+|   +.++.++.+|.+.++|.++|+.+.......    
T Consensus       279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~  357 (599)
T 1w6s_A          279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV  357 (599)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             eEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccc
Confidence            677777777632      2221        2222 3333 577   567788999999999999999887654211    


Q ss_pred             --------C-Cc--------------------------EEEEEccCCCcEEEEE--------------------------
Q 004217          150 --------R-TP--------------------------WVVRFHPLNPTIIASG--------------------------  168 (767)
Q Consensus       150 --------~-~V--------------------------~sLafsP~dg~lLaSg--------------------------  168 (767)
                              + .+                          ..++++| +..+++..                          
T Consensus       358 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~  436 (599)
T 1w6s_A          358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP-KRELFFMGINHICMDWEPFMLPYKAGQFFVGATL  436 (599)
T ss_dssp             EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             ccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC-CCCEEEEeccccceeeecccccccCCcceecccc
Confidence                    1 11                          1356666 44444332                          


Q ss_pred             -------e------CCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecC
Q 004217          169 -------S------LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRT  234 (767)
Q Consensus       169 -------S------~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h  234 (767)
                             +      .++.|..||+.+++.+.......++..-.....+.+++.++.++ |+.||.++++.+..  ...+.
T Consensus       437 ~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~--~~l~~  514 (599)
T 1w6s_A          437 NMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWK--FKIPS  514 (599)
T ss_dssp             EEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE--EECSS
T ss_pred             eeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEE--eeCCC
Confidence                   1      35789999999999888765443332212233566677777554 99999999998761  11222


Q ss_pred             CCCeEEEEEccCCCeEEEEEe
Q 004217          235 RRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       235 ~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .....-+.+..+|+.+++...
T Consensus       515 g~~~~P~~y~~~G~qyv~~~~  535 (599)
T 1w6s_A          515 GAIGYPMTYTHKGTQYVAIYY  535 (599)
T ss_dssp             CCCSCCEEEEETTEEEEEEEE
T ss_pred             CcEeccEEEEeCCEEEEEEEc
Confidence            222233556678886555443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.86  E-value=0.048  Score=64.40  Aligned_cols=170  Identities=12%  Similarity=0.017  Sum_probs=114.1

Q ss_pred             EEcCCCEEEEEeCCCeEEEEeCCCCCCC-------CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc--c
Q 004217           77 GRDARRGLASWVEAESLHHLRPKYCPLS-------PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH--G  147 (767)
Q Consensus        77 ~sd~g~~LaSgs~DgsIrlWd~~t~~L~-------gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~--g  147 (767)
                      ..+....|+.|+.++-|..|+..+.++.       .....|.++...++|.+.+ |+.++-+..+|..+++......  .
T Consensus       369 ~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~  447 (781)
T 3v9f_A          369 CDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKN  447 (781)
T ss_dssp             EECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTT
T ss_pred             EEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCC
Confidence            3355567888887777888888754221       2345699999988886554 6666778999988776433221  1


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-C-----CCCeEEEEEcCCCCEEEEEECCcEEEEEcCC
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-F-----YRPIASIAFHASGELLAVASGHKLYIWRYNM  221 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h-----~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t  221 (767)
                      ....|.++...+ ++.+.+ |.. +.|.+||..+++...... .     ...|.++..+++|++.+...+++|..||..+
T Consensus       448 ~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~  524 (781)
T 3v9f_A          448 ELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDM  524 (781)
T ss_dssp             CCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTC
T ss_pred             CCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCC
Confidence            345788888877 565555 444 568999988766543322 1     3678999999999877655557799999876


Q ss_pred             CccccCCeEEec---CCCCeEEEEEccCCCeEEEE
Q 004217          222 REETSSPRIVLR---TRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       222 ~~~~~~~~~l~~---h~~~VtsVaFSPDG~~LlaS  253 (767)
                      .+...   ....   ....|.++...++|...+.+
T Consensus       525 ~~~~~---~~~~~~l~~~~i~~i~~d~~g~lWi~T  556 (781)
T 3v9f_A          525 QLVRK---FNQYEGFCSNTINQIYRSSKGQMWLAT  556 (781)
T ss_dssp             CEEEE---ECTTTTCSCSCEEEEEECTTSCEEEEE
T ss_pred             CeEEE---ccCCCCCCCCeeEEEEECCCCCEEEEE
Confidence            54322   1111   24578999999999966655

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.85  E-value=0.002  Score=70.54  Aligned_cols=89  Identities=13%  Similarity=-0.081  Sum_probs=71.2

Q ss_pred             eEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEe----------CCCeEEEEECCCCeEEEeecCC--------
Q 004217          130 TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS----------LDHEVRLWNASTAECIGSRDFY--------  191 (767)
Q Consensus       130 tVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS----------~DGtVrIWDl~tg~~i~~l~h~--------  191 (767)
                      +|.++|..+++.+.++..-..+  .+.++| ++++++.+.          .+++|.+||+.+++.+..+...        
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence            8899999999999988655555  799999 666666664          4789999999999999887532        


Q ss_pred             CCeEEEEEcCCCCEEEEEEC---CcEEE--EEcCC
Q 004217          192 RPIASIAFHASGELLAVASG---HKLYI--WRYNM  221 (767)
Q Consensus       192 ~~VtsVafSPdG~~LAsgSd---d~V~V--WDl~t  221 (767)
                      .....++|+|||++++++..   +.|.+  +|+.+
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            34567999999999998873   34888  88876

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.76  E-value=0.019  Score=63.52  Aligned_cols=142  Identities=11%  Similarity=0.172  Sum_probs=87.9

Q ss_pred             CCeEEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCc-EEEEEeCCC----eEEEEECCC
Q 004217          108 RSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT-IIASGSLDH----EVRLWNAST  181 (767)
Q Consensus       108 ~sVtsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~-lLaSgS~DG----tVrIWDl~t  181 (767)
                      .....|+|+| ++..|+.+...+.|+++|++++.... +.........|+|++ +++ ++++...++    .+..++ ..
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~-~~  213 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILT-RE  213 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEE-GG
T ss_pred             CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEe-CC
Confidence            3567899998 46667666665889999998776444 333456688999999 777 555443222    233333 33


Q ss_pred             CeEE--EeecCCCCeEEEEEcC-CCCEEEEEE-CCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          182 AECI--GSRDFYRPIASIAFHA-SGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       182 g~~i--~~l~h~~~VtsVafSP-dG~~LAsgS-dd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      +...  ..+........++++| +|.++++-. .++|+.+|........  ..........+.++|+|+|++|+++.
T Consensus       214 g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~~~P~gia~~pdG~~lyv~d  288 (430)
T 3tc9_A          214 SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDSGWEFHIQFHPSGNYAYIVV  288 (430)
T ss_dssp             GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCCCcceeEEEcCCCCEEEEEE
Confidence            3221  2222234456788999 666555443 3559999988654311  11122234578999999999766654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.76  E-value=0.068  Score=55.48  Aligned_cols=180  Identities=12%  Similarity=-0.034  Sum_probs=101.2

Q ss_pred             eEEEEEEcCCCEEEEEeC-CC-eEEEEeCCCCCCC-----CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE-EE
Q 004217           72 QIFEAGRDARRGLASWVE-AE-SLHHLRPKYCPLS-----PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC-LK  143 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~-Dg-sIrlWd~~t~~L~-----gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~-l~  143 (767)
                      +.-+++..+++.+++-.. ++ .|..++..++++.     ........+++.+++..+++-..++.|.++|..+++. +.
T Consensus        74 p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~  153 (306)
T 2p4o_A           74 VSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIW  153 (306)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEE
Confidence            334555556664444332 22 4555665554321     1223345566666555555555688999999876532 22


Q ss_pred             EEcc---------CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC-CeE--EEeecCCCCeEEEEEcCCCCEEEEEE-
Q 004217          144 VLHG---------HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AEC--IGSRDFYRPIASIAFHASGELLAVAS-  210 (767)
Q Consensus       144 ~L~g---------H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t-g~~--i~~l~h~~~VtsVafSPdG~~LAsgS-  210 (767)
                      ...+         .-.....+  +|++..++++-...+.|..||+.. ++.  ...+........++++++|+++++.. 
T Consensus       154 ~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~  231 (306)
T 2p4o_A          154 LEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI  231 (306)
T ss_dssp             EECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT
T ss_pred             EECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCC
Confidence            1111         11234555  773345666667788999999875 322  11111123456789999998765554 


Q ss_pred             CCcEEEEEcCCCccccCCeEEecCCCCeEEEEEc---cCCCeEEEEEe
Q 004217          211 GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFH---PHAAPLLLTAE  255 (767)
Q Consensus       211 dd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFS---PDG~~LlaSgs  255 (767)
                      .++|.++|.. ++... ...........++++|.   ||++.|+++..
T Consensus       232 ~~~V~~~~~~-G~~~~-~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          232 YNSVVRIAPD-RSTTI-IAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             TCCEEEECTT-CCEEE-EECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CCeEEEECCC-CCEEE-EeecccccCCceEEEEecccCCCCEEEEECC
Confidence            4559999875 33211 00111223568999999   89887777664

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.73  E-value=0.076  Score=58.89  Aligned_cols=149  Identities=14%  Similarity=0.105  Sum_probs=91.7

Q ss_pred             eEEEEEEc--CCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEEeCC---Ce-EEEEECCCCeE-
Q 004217           72 QIFEAGRD--ARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGD---HT-VKIIDCQTGSC-  141 (767)
Q Consensus        72 ~~~vA~sd--~g~~LaSgs~DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASgs~D---Gt-VrVWDl~tg~~-  141 (767)
                      +.-+++..  +...|+.....+.|+.++...++   +.........++|+++|+++++....   .. +...+...+.. 
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~  220 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTE  220 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCC
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeec
Confidence            44555654  24556555444889999987663   33445568999999999944443321   12 33333222211 


Q ss_pred             EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-e--cCCCCeEEEEEcCCCCEEEEEEC--CcEEE
Q 004217          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-R--DFYRPIASIAFHASGELLAVASG--HKLYI  216 (767)
Q Consensus       142 l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l--~h~~~VtsVafSPdG~~LAsgSd--d~V~V  216 (767)
                      ...+. .......++++|.++.++++-..++.|+.+|..++..... +  ........++|+|+|++|..+..  +.|+.
T Consensus       221 ~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~  299 (433)
T 4hw6_A          221 RLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYR  299 (433)
T ss_dssp             EEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEE
Confidence            11222 2344567889986677777766788999999987766222 2  22223357999999997777663  44999


Q ss_pred             EEcCC
Q 004217          217 WRYNM  221 (767)
Q Consensus       217 WDl~t  221 (767)
                      +|+..
T Consensus       300 ~~~d~  304 (433)
T 4hw6_A          300 VDYNR  304 (433)
T ss_dssp             EEBCT
T ss_pred             EeCCC
Confidence            88763

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.67  E-value=0.41  Score=50.18  Aligned_cols=178  Identities=9%  Similarity=-0.029  Sum_probs=105.8

Q ss_pred             eEEEEEEcCC-CEEEEEeCCCeEEEEeCCC----CC----CCCCCCCeEEEEECCCCCeE-EEEeCCCeEEEEECCCCeE
Q 004217           72 QIFEAGRDAR-RGLASWVEAESLHHLRPKY----CP----LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSC  141 (767)
Q Consensus        72 ~~~vA~sd~g-~~LaSgs~DgsIrlWd~~t----~~----L~gH~~sVtsVaFSpDG~~L-ASgs~DGtVrVWDl~tg~~  141 (767)
                      +..+++...+ ...++-...+.|..++...    ..    +...-.....+++++.+..| ++-..++.|.++|++....
T Consensus        32 p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~  111 (316)
T 1ijq_A           32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR  111 (316)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE
T ss_pred             eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce
Confidence            4445555444 3444445567888888765    11    11222456789998755544 4546678999999875543


Q ss_pred             EEEEccCCCCcEEEEEccCCCcEEEEEeCC-CeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEEC--CcEEEE
Q 004217          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLD-HEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG--HKLYIW  217 (767)
Q Consensus       142 l~~L~gH~~~V~sLafsP~dg~lLaSgS~D-GtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSd--d~V~VW  217 (767)
                      ...+...-.....++++|.++.++++.... +.|...++......... ..-.....+++++++..|..+..  +.|..+
T Consensus       112 ~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~  191 (316)
T 1ijq_A          112 KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI  191 (316)
T ss_dssp             EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEE
Confidence            333333445688999998555566665443 78888888643322222 23456789999998887777763  349999


Q ss_pred             EcCCCccccCCeEEec--CCCCeEEEEEccCCCeEEEEE
Q 004217          218 RYNMREETSSPRIVLR--TRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       218 Dl~t~~~~~~~~~l~~--h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      |+.......   ....  .......+++.  +..++.+.
T Consensus       192 d~dg~~~~~---~~~~~~~~~~P~giav~--~~~ly~~d  225 (316)
T 1ijq_A          192 DVNGGNRKT---ILEDEKRLAHPFSLAVF--EDKVFWTD  225 (316)
T ss_dssp             ETTSCSCEE---EEECTTTTSSEEEEEEE--TTEEEEEE
T ss_pred             ecCCCceEE---EeecCCccCCcEEEEEE--CCEEEEEE
Confidence            987543211   1111  22345677774  34455543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.66  E-value=0.1  Score=56.88  Aligned_cols=173  Identities=10%  Similarity=0.099  Sum_probs=109.0

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCCCCCC-CCeEEEEECCC----CCe--EEEE--eC--CCeEEEEEC--CCCeEEEEEcc-
Q 004217           82 RGLASWVEAESLHHLRPKYCPLSPPP-RSTIAAAFSPD----GKT--LAST--HG--DHTVKIIDC--QTGSCLKVLHG-  147 (767)
Q Consensus        82 ~~LaSgs~DgsIrlWd~~t~~L~gH~-~sVtsVaFSpD----G~~--LASg--s~--DGtVrVWDl--~tg~~l~~L~g-  147 (767)
                      ..++.-.+.+-+.+||+....+.... +.++.+..-|+    |+.  |+.+  -.  +++|.+|++  .+++ +..+.. 
T Consensus        41 s~ii~t~k~~gL~Vydl~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~  119 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSLDGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDP  119 (355)
T ss_dssp             CEEEEEETTTEEEEEETTSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCT
T ss_pred             cEEEEEcCCCCEEEEcCCCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecccc
Confidence            34555556677888888444332222 56777776662    332  3333  33  578999977  3443 555522 


Q ss_pred             -----CC-CCcEEEEE--ccCCCc-EEEEEeCCCeEEEEECC-------CCeEEEeecCCCCeEEEEEcCCCCEEEEEEC
Q 004217          148 -----HR-RTPWVVRF--HPLNPT-IIASGSLDHEVRLWNAS-------TAECIGSRDFYRPIASIAFHASGELLAVASG  211 (767)
Q Consensus       148 -----H~-~~V~sLaf--sP~dg~-lLaSgS~DGtVrIWDl~-------tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd  211 (767)
                           .. ..+..+++  +|..+. +++....+|.+..|++.       +.+.++.+.....+..+..++....|+.+-.
T Consensus       120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eE  199 (355)
T 3amr_A          120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEE  199 (355)
T ss_dssp             TSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEET
T ss_pred             ccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecc
Confidence                 12 56777888  674443 67778889999999883       3466777888889999999999899999987


Q ss_pred             Cc-EEEEEcCCCc--cccCCeEE-ecC-CCCeEEEEE--ccCCC-eEEEEEe
Q 004217          212 HK-LYIWRYNMRE--ETSSPRIV-LRT-RRSLRAVHF--HPHAA-PLLLTAE  255 (767)
Q Consensus       212 d~-V~VWDl~t~~--~~~~~~~l-~~h-~~~VtsVaF--SPDG~-~LlaSgs  255 (767)
                      +. |..+|.+-..  ........ .++ ...+..|++  .++++ +|++++.
T Consensus       200 d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ  251 (355)
T 3amr_A          200 DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ  251 (355)
T ss_dssp             TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG
T ss_pred             cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC
Confidence            65 7777755221  10100111 122 346888888  56666 7887775

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.61  E-value=0.15  Score=52.96  Aligned_cols=152  Identities=9%  Similarity=0.111  Sum_probs=99.1

Q ss_pred             CCCCCCCCeEEEEECCCCCeEE-EEeCCCeEEEEECCCCeEEEEEcc-CCCCcEEEEEccCCCcEEEEEeCCCeEEEEEC
Q 004217          102 PLSPPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHG-HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG~~LA-Sgs~DGtVrVWDl~tg~~l~~L~g-H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl  179 (767)
                      .+.+-...+..++|+|+++.|+ +...++.|...|.. ++.++.+.- -......|++.+ ++.++++.-.++.+.++++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence            4566667899999999776555 46678899999988 887777632 224578899988 7777777667889999987


Q ss_pred             CCCeE---EEee--c-----CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEe-------cCCCCeEEE
Q 004217          180 STAEC---IGSR--D-----FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVL-------RTRRSLRAV  241 (767)
Q Consensus       180 ~tg~~---i~~l--~-----h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~-------~h~~~VtsV  241 (767)
                      .....   +...  .     .+.....++|+|+++.|.++.+.. ..+|.++............       .+...+.++
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            65442   1222  1     234568999999998777776433 4444443100000011111       123467899


Q ss_pred             EEccCCCeEEEEEe
Q 004217          242 HFHPHAAPLLLTAE  255 (767)
Q Consensus       242 aFSPDG~~LlaSgs  255 (767)
                      +|+|....+++.+.
T Consensus       179 ~~dp~tg~lliLS~  192 (255)
T 3qqz_A          179 EFNQQKNTLLVLSH  192 (255)
T ss_dssp             EEETTTTEEEEEET
T ss_pred             EEcCCCCeEEEEEC
Confidence            99998776666554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.59  E-value=0.071  Score=56.58  Aligned_cols=163  Identities=10%  Similarity=-0.031  Sum_probs=104.5

Q ss_pred             CCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCC-CeEEEEeCCCeEEEEECCCCeE-EEEEccCCCCcEEEEEccCC
Q 004217           89 EAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSC-LKVLHGHRRTPWVVRFHPLN  161 (767)
Q Consensus        89 ~DgsIrlWd~~t~~-----L~gH~~sVtsVaFSpDG-~~LASgs~DGtVrVWDl~tg~~-l~~L~gH~~~V~sLafsP~d  161 (767)
                      ....|+..++....     +......+.+++|++.+ .++.+-...+.|+.++...+.. ...+...-.....+++.+.+
T Consensus        11 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~   90 (318)
T 3sov_A           11 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   90 (318)
T ss_dssp             CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred             ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence            45667777776542     01112346789999854 4445555678999999876632 12222223456788998756


Q ss_pred             CcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEEC---CcEEEEEcCCCccccCCeEEecCCCC
Q 004217          162 PTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRRS  237 (767)
Q Consensus       162 g~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSd---d~V~VWDl~t~~~~~~~~~l~~h~~~  237 (767)
                      ++++++-...+.|.++++......... ........++++|.+.+|+.+..   .+|...++.......   .....-..
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~---~~~~~l~~  167 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI---IINSEIYW  167 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE---EECSSCSC
T ss_pred             CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE---EEECCCCC
Confidence            777787777889999998764433333 34456789999998776666652   348888876543211   22223345


Q ss_pred             eEEEEEccCCCeEEEEE
Q 004217          238 LRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       238 VtsVaFSPDG~~LlaSg  254 (767)
                      .+.|+|+|++..|..+-
T Consensus       168 Pnglavd~~~~~lY~aD  184 (318)
T 3sov_A          168 PNGLTLDYEEQKLYWAD  184 (318)
T ss_dssp             EEEEEEETTTTEEEEEE
T ss_pred             ccEEEEeccCCEEEEEE
Confidence            68999999888777663

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.58  E-value=0.15  Score=60.10  Aligned_cols=173  Identities=4%  Similarity=-0.071  Sum_probs=114.6

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCCCCC-------------CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYCPLS-------------PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC  141 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~-------------gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~  141 (767)
                      ....+....|+.|+.++-|..++.....+.             -....|.++...++|++. .|+.++-|.+||..+++.
T Consensus       317 ~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~  395 (781)
T 3v9f_A          317 YIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVA  395 (781)
T ss_dssp             EEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEE
T ss_pred             EEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeE
Confidence            334456667888988888888888754321             123569999999887654 566566688899876543


Q ss_pred             EEEE---ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec---CCCCeEEEEEcCCCCEEEEEECCcEE
Q 004217          142 LKVL---HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVASGHKLY  215 (767)
Q Consensus       142 l~~L---~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~---h~~~VtsVafSPdG~~LAsgSdd~V~  215 (767)
                      ....   ......|.++...+ ++.+.+ |..++.+..+|..+++......   ....|.++..+++|++.+. +.++|.
T Consensus       396 ~~~~~~~~~~~~~v~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~~Gl~  472 (781)
T 3v9f_A          396 IYNKENRELLSNSVLCSLKDS-EGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-THAGVF  472 (781)
T ss_dssp             ECC-----CCCSBEEEEEECT-TSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ETTEEE
T ss_pred             EEccCCCCCCCcceEEEEECC-CCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-ECCceE
Confidence            2111   12335688888876 555554 6666779999988776544321   3467999999888875554 457899


Q ss_pred             EEEcCCCccccCCeEEecC-----CCCeEEEEEccCCCeEEEEE
Q 004217          216 IWRYNMREETSSPRIVLRT-----RRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       216 VWDl~t~~~~~~~~~l~~h-----~~~VtsVaFSPDG~~LlaSg  254 (767)
                      +||..+++...   .....     ...|.++...++|...+.+.
T Consensus       473 ~~~~~~~~~~~---~~~~~~~~~~~~~i~~i~~d~~g~lWigt~  513 (781)
T 3v9f_A          473 VIDLASKKVIH---HYDTSNSQLLENFVRSIAQDSEGRFWIGTF  513 (781)
T ss_dssp             EEESSSSSCCE---EECTTTSSCSCSCEEEEEECTTCCEEEEES
T ss_pred             EEeCCCCeEEe---cccCcccccccceeEEEEEcCCCCEEEEEc
Confidence            99987765322   11111     46799999999999666553

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.52  E-value=0.5  Score=54.73  Aligned_cols=106  Identities=8%  Similarity=0.019  Sum_probs=71.0

Q ss_pred             CCCEEEEEeCCC-----------eEEEEeCCCCCCC-------CCCCCeEEEEECCCCCeEEEEeC-CCeEEEEECCCCe
Q 004217           80 ARRGLASWVEAE-----------SLHHLRPKYCPLS-------PPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGS  140 (767)
Q Consensus        80 ~g~~LaSgs~Dg-----------sIrlWd~~t~~L~-------gH~~sVtsVaFSpDG~~LASgs~-DGtVrVWDl~tg~  140 (767)
                      +++.++.|+.+.           .+.+||..+.+..       .+.....++++..++++++.|+. +..+.+||..+++
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~  276 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS  276 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence            666666665432           5889999876422       23334556788899999999984 5689999998876


Q ss_pred             EEEEEccCCC-CcEEEEEccCCCcEEEEEe-CC-----CeEEEEECCCCeEEE
Q 004217          141 CLKVLHGHRR-TPWVVRFHPLNPTIIASGS-LD-----HEVRLWNASTAECIG  186 (767)
Q Consensus       141 ~l~~L~gH~~-~V~sLafsP~dg~lLaSgS-~D-----GtVrIWDl~tg~~i~  186 (767)
                      -...-..+.. .-.++...+ ++++++.|+ .+     ..+.+||..+.+...
T Consensus       277 W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~  328 (656)
T 1k3i_A          277 WIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS  328 (656)
T ss_dssp             EEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred             eeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCccee
Confidence            4332221222 223455666 788998888 44     579999999877554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.50  E-value=0.16  Score=53.57  Aligned_cols=141  Identities=9%  Similarity=0.036  Sum_probs=86.5

Q ss_pred             CCCCCeEEEEECCCCCeEEEEeCCCeEEEEEC--CCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC
Q 004217          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC--QTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA  182 (767)
Q Consensus       105 gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl--~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg  182 (767)
                      ++...+..+++.+++++++.+...+..+-+|-  .+-+.+  -......+..+.+.+ ++.+++ ++.+|.+++++...+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~-~g~~~~-~~~~G~~~~s~~D~G  235 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTP-DGRLWM-IVNGGKIAFSDPDNS  235 (327)
T ss_dssp             SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECT-TSCEEE-EETTTEEEEEETTEE
T ss_pred             CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECC-CCCEEE-EeCCceEEEecCCCC
Confidence            45668999999999988877655444444442  222222  134456788899988 666554 456788887753334


Q ss_pred             eEEEeec-----CCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEe---cCCCCeEEEEEccCCCeEEEEE
Q 004217          183 ECIGSRD-----FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVL---RTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       183 ~~i~~l~-----h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~---~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      +....+.     ....+..+++.+++++++++.++.| ++..+.++...   ...   .....++++.|.+++. +++.+
T Consensus       236 ~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~---~~~~~~~~~~~~~~v~~~~~~~-~~~~G  310 (327)
T 2xbg_A          236 ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQ---QDVDVKKVPSNFYKILFFSPDQ-GFILG  310 (327)
T ss_dssp             EEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCE---ECGGGTTSSSCCCEEEEEETTE-EEEEC
T ss_pred             CeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccE---EcCccCCCCCCeEEEEEECCCc-eEEEc
Confidence            4333222     2245889999998888888776666 44444444322   222   1245688999986665 44443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.48  E-value=0.43  Score=52.10  Aligned_cols=178  Identities=8%  Similarity=-0.040  Sum_probs=109.2

Q ss_pred             eEEEEEEcCCCE-EEEEeCCCeEEEEeCCCC-------C-CCCCCCCeEEEEECCC-CCeEEEEeCCCeEEEEECCCCeE
Q 004217           72 QIFEAGRDARRG-LASWVEAESLHHLRPKYC-------P-LSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGSC  141 (767)
Q Consensus        72 ~~~vA~sd~g~~-LaSgs~DgsIrlWd~~t~-------~-L~gH~~sVtsVaFSpD-G~~LASgs~DGtVrVWDl~tg~~  141 (767)
                      ...+++...... .++-...+.|+.+++...       . +.........+++.+. +++.++-...+.|.+.|++....
T Consensus       114 ~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~  193 (400)
T 3p5b_L          114 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR  193 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE
T ss_pred             ceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce
Confidence            555666544444 444456778888887641       1 1223456788999984 44455555678999999886654


Q ss_pred             EEEEccCCCCcEEEEEccCCCcEEEEEeC-CCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEEC--CcEEEE
Q 004217          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HKLYIW  217 (767)
Q Consensus       142 l~~L~gH~~~V~sLafsP~dg~lLaSgS~-DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSd--d~V~VW  217 (767)
                      ...+...-.....|+++|.++.++++-.. .+.|...++.......... .-.....|++++++..|..+..  +.|..+
T Consensus       194 ~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~  273 (400)
T 3p5b_L          194 KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI  273 (400)
T ss_dssp             EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEE
Confidence            44444444568899999955556665433 4788888887544333332 3356789999998888877763  349999


Q ss_pred             EcCCCccccCCeEEec--CCCCeEEEEEccCCCeEEEEE
Q 004217          218 RYNMREETSSPRIVLR--TRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       218 Dl~t~~~~~~~~~l~~--h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      |++......   ....  .......|++  ++..++.+.
T Consensus       274 d~dG~~~~~---~~~~~~~l~~P~gl~v--~~~~lywtd  307 (400)
T 3p5b_L          274 DVNGGNRKT---ILEDEKRLAHPFSLAV--FEDKVFWTD  307 (400)
T ss_dssp             ETTSCCCEE---EEECSSTTSSEEEEEE--ETTEEEEEE
T ss_pred             eCCCCccEE---EEeCCCCCCCCEEEEE--eCCEEEEec
Confidence            987544321   2221  1234556666  344455553

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.30  E-value=0.078  Score=61.56  Aligned_cols=178  Identities=9%  Similarity=-0.010  Sum_probs=104.4

Q ss_pred             EEcCCCEEEEEe-CCCeEEEEeCCCCC---CC--CCCCCeEEEEECCCCCeEEEEe-CC-----CeEEEEECCCCeEEEE
Q 004217           77 GRDARRGLASWV-EAESLHHLRPKYCP---LS--PPPRSTIAAAFSPDGKTLASTH-GD-----HTVKIIDCQTGSCLKV  144 (767)
Q Consensus        77 ~sd~g~~LaSgs-~DgsIrlWd~~t~~---L~--gH~~sVtsVaFSpDG~~LASgs-~D-----GtVrVWDl~tg~~l~~  144 (767)
                      +..+++.++.|. .+..+.+||..+.+   +.  ...+.-.++++.+||++++.|+ .+     ..+.+||..+++-...
T Consensus       250 ~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          250 MDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             ECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred             CCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC
Confidence            335666666665 55689999988752   11  1122334566667999999998 44     5699999987653321


Q ss_pred             -------E-cc-------CCC-------------------------------------------------CcEEEEEccC
Q 004217          145 -------L-HG-------HRR-------------------------------------------------TPWVVRFHPL  160 (767)
Q Consensus       145 -------L-~g-------H~~-------------------------------------------------~V~sLafsP~  160 (767)
                             + ..       +..                                                 .-.++.|...
T Consensus       330 ~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~  409 (656)
T 1k3i_A          330 PNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAV  409 (656)
T ss_dssp             TTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETT
T ss_pred             CCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCC
Confidence                   0 00       000                                                 1122333233


Q ss_pred             CCcEEEEEeCCC-----------eEEEEECCCCeEEEee----cCCCCeEEEEEcCCCCEEEEEEC------------Cc
Q 004217          161 NPTIIASGSLDH-----------EVRLWNASTAECIGSR----DFYRPIASIAFHASGELLAVASG------------HK  213 (767)
Q Consensus       161 dg~lLaSgS~DG-----------tVrIWDl~tg~~i~~l----~h~~~VtsVafSPdG~~LAsgSd------------d~  213 (767)
                      ++++++.|+.++           .|.+||..+.+.....    .....-.+++..|+|++++.|+.            ..
T Consensus       410 ~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~  489 (656)
T 1k3i_A          410 KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFT  489 (656)
T ss_dssp             TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCC
T ss_pred             CCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccc
Confidence            677888887543           6888888877655443    22222345567789999998873            23


Q ss_pred             EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       214 V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +.+||..+.+-.. .......+.......+.|||+.+++++.
T Consensus       490 v~~ydp~t~~W~~-~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          490 PEIYVPEQDTFYK-QNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CEEEEGGGTEEEE-CCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             eEEEcCCCCceee-cCCCCCccccccHhhcCCCcEEEecCCC
Confidence            8999987654211 1111112233345567799996666554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.25  E-value=0.95  Score=47.78  Aligned_cols=177  Identities=8%  Similarity=-0.104  Sum_probs=106.1

Q ss_pred             eEEEEEEc-CCCEEEEEeCCCeEEEEeCCCCCC-----CCCCCCeEEEEECCCC-CeEEEEeCCCeEEEEECCCCeEEEE
Q 004217           72 QIFEAGRD-ARRGLASWVEAESLHHLRPKYCPL-----SPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCLKV  144 (767)
Q Consensus        72 ~~~vA~sd-~g~~LaSgs~DgsIrlWd~~t~~L-----~gH~~sVtsVaFSpDG-~~LASgs~DGtVrVWDl~tg~~l~~  144 (767)
                      ...+.+.. ++...++-...+.|..++......     ...-.....+++.+.+ +++++-...+.|.+++++.......
T Consensus        37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l  116 (318)
T 3sov_A           37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL  116 (318)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEE
Confidence            33444443 344445555677888888765421     1122356678998744 4445555678999999875443333


Q ss_pred             EccCCCCcEEEEEccCCCcEEEEEe-CCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEEC--CcEEEEEcC
Q 004217          145 LHGHRRTPWVVRFHPLNPTIIASGS-LDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG--HKLYIWRYN  220 (767)
Q Consensus       145 L~gH~~~V~sLafsP~dg~lLaSgS-~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~  220 (767)
                      +.........++++|.++.++++-. ..+.|...++......... ..-...+.++|++++..|..+..  +.|..+|+.
T Consensus       117 ~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d  196 (318)
T 3sov_A          117 FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD  196 (318)
T ss_dssp             ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence            3344566789999984455555542 3578888887643332222 22345689999998887777763  449999987


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      ......   ...........+++.  +..++.+
T Consensus       197 G~~~~~---~~~~~~~~P~glav~--~~~lywt  224 (318)
T 3sov_A          197 GTNRQA---VVKGSLPHPFALTLF--EDILYWT  224 (318)
T ss_dssp             SCSCEE---EECSCCSCEEEEEEE--TTEEEEE
T ss_pred             CCceEE---EecCCCCCceEEEEe--CCEEEEE
Confidence            543211   222234455677774  3345544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.21  E-value=1  Score=46.64  Aligned_cols=175  Identities=10%  Similarity=0.062  Sum_probs=99.8

Q ss_pred             EEEcCCCEEE-EEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE---EEEEc
Q 004217           76 AGRDARRGLA-SWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC---LKVLH  146 (767)
Q Consensus        76 A~sd~g~~La-Sgs~DgsIrlWd~~t~-----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~---l~~L~  146 (767)
                      +...++..|+ ...+++.|...|....     .+.+ ....-.|++.+++.++++.-.++.+.++++.....   +....
T Consensus        33 a~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~  111 (255)
T 3qqz_A           33 TWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIK  111 (255)
T ss_dssp             EEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeec
Confidence            3333334343 3455666666666522     1222 25678899999888767665678899998865432   22221


Q ss_pred             ------cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC---CCeEEEee--------cCCCCeEEEEEcCCCCEEEEE
Q 004217          147 ------GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS---TAECIGSR--------DFYRPIASIAFHASGELLAVA  209 (767)
Q Consensus       147 ------gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~---tg~~i~~l--------~h~~~VtsVafSPdG~~LAsg  209 (767)
                            ........++|+| .++.|+.+.......||.+.   ....+..+        .+...+..++++|....|.+-
T Consensus       112 ~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliL  190 (255)
T 3qqz_A          112 IPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVL  190 (255)
T ss_dssp             CCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEE
T ss_pred             cccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEE
Confidence                  1234568999999 55444444444344444443   11111111        123457899999987766666


Q ss_pred             ECC-c-EEEEEcCCCccccCCeEEec-C------CCCeEEEEEccCCCeEEEEEe
Q 004217          210 SGH-K-LYIWRYNMREETSSPRIVLR-T------RRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       210 Sdd-~-V~VWDl~t~~~~~~~~~l~~-h------~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ++. + |.++|.... .+. ...+.. .      -..-..|+|.++|+ |.++++
T Consensus       191 S~~s~~L~~~d~~g~-~~~-~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE  242 (255)
T 3qqz_A          191 SHESRALQEVTLVGE-VIG-EMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSE  242 (255)
T ss_dssp             ETTTTEEEEECTTCC-EEE-EEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEET
T ss_pred             ECCCCeEEEEcCCCC-EEE-EEEcCCccCCcccccCCCCeeEECCCCC-EEEEcC
Confidence            643 3 888886644 322 112221 1      12567999999998 555554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.19  E-value=0.6  Score=54.33  Aligned_cols=162  Identities=7%  Similarity=-0.045  Sum_probs=109.4

Q ss_pred             CCCeEEEEeCCCCCC-----CCCCCCeEEEEECCCCCeEE-EEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCC
Q 004217           89 EAESLHHLRPKYCPL-----SPPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNP  162 (767)
Q Consensus        89 ~DgsIrlWd~~t~~L-----~gH~~sVtsVaFSpDG~~LA-Sgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg  162 (767)
                      ....|+..+++....     ...-..+..|+|++++..|+ +-..++.|+.++++.......+......+..+++.+.++
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~   92 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK   92 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence            567788888875421     12335688999999655554 445678999999876544444443334677899987567


Q ss_pred             cEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEEC---CcEEEEEcCCCccccCCeEEecCCCCe
Q 004217          163 TIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRRSL  238 (767)
Q Consensus       163 ~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSd---d~V~VWDl~t~~~~~~~~~l~~h~~~V  238 (767)
                      +++++-...+.|.+.++........+ ..-.....|+++|...+|..+..   .+|...++......    .+...-...
T Consensus        93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~----~l~~~~~~P  168 (628)
T 4a0p_A           93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT----TLVPNVGRA  168 (628)
T ss_dssp             EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE----EEECSCSSE
T ss_pred             EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE----EEECCCCCc
Confidence            77788777889999998765433323 33456789999997666666652   34888887755432    233345678


Q ss_pred             EEEEEccCCCeEEEEE
Q 004217          239 RAVHFHPHAAPLLLTA  254 (767)
Q Consensus       239 tsVaFSPDG~~LlaSg  254 (767)
                      +.|+++++++.|..+-
T Consensus       169 ~GlalD~~~~~LY~aD  184 (628)
T 4a0p_A          169 NGLTIDYAKRRLYWTD  184 (628)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             ceEEEccccCEEEEEE
Confidence            8999999888777664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.16  E-value=0.51  Score=56.55  Aligned_cols=178  Identities=9%  Similarity=-0.030  Sum_probs=108.4

Q ss_pred             eEEEEEEcC-CCEEEEEeCCCeEEEEeCCCC-------C-CCCCCCCeEEEEECCCCCeEE-EEeCCCeEEEEECCCCeE
Q 004217           72 QIFEAGRDA-RRGLASWVEAESLHHLRPKYC-------P-LSPPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSC  141 (767)
Q Consensus        72 ~~~vA~sd~-g~~LaSgs~DgsIrlWd~~t~-------~-L~gH~~sVtsVaFSpDG~~LA-Sgs~DGtVrVWDl~tg~~  141 (767)
                      ...+++... +...++-...+.|+.+++...       . +.........|++.+.++.|+ +-...+.|.+.+++....
T Consensus       426 ~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~  505 (791)
T 3m0c_C          426 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR  505 (791)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE
T ss_pred             eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE
Confidence            444555543 344445556677888887642       1 122345567899998765554 445678999999886554


Q ss_pred             EEEEccCCCCcEEEEEccCCCcEEEEEeCC-CeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEEC--CcEEEE
Q 004217          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLD-HEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HKLYIW  217 (767)
Q Consensus       142 l~~L~gH~~~V~sLafsP~dg~lLaSgS~D-GtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSd--d~V~VW  217 (767)
                      ...+...-.....|+++|.++.++++-..+ +.|...++........+. .-.....|++++.+..|+.+..  +.|..+
T Consensus       506 ~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~  585 (791)
T 3m0c_C          506 KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI  585 (791)
T ss_dssp             EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEE
Confidence            444444445688999999556666665333 789998987554443333 3357889999988887777763  349999


Q ss_pred             EcCCCccccCCeEEecC--CCCeEEEEEccCCCeEEEEE
Q 004217          218 RYNMREETSSPRIVLRT--RRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       218 Dl~t~~~~~~~~~l~~h--~~~VtsVaFSPDG~~LlaSg  254 (767)
                      |+.......   .....  -....+|++  ++.+|+.+-
T Consensus       586 d~dG~~~~~---v~~~~~~l~~P~glav--~~~~lYwtD  619 (791)
T 3m0c_C          586 DVNGGNRKT---ILEDEKRLAHPFSLAV--FEDKVFWTD  619 (791)
T ss_dssp             ETTSCSCEE---EEECTTTTSSEEEEEE--ETTEEEEEE
T ss_pred             ecCCCceEE---EecCCCccCCCCEEEE--eCCEEEEEE
Confidence            987654322   22221  223446665  344565553

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.09  E-value=0.09  Score=56.75  Aligned_cols=142  Identities=11%  Similarity=0.093  Sum_probs=91.5

Q ss_pred             eEEEEECCCCCeEEEEe-CCCeEEEEECCCCeEEEE-Ecc----CC--CCcEEEEE---ccCCCcEEEEEe---------
Q 004217          110 TIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKV-LHG----HR--RTPWVVRF---HPLNPTIIASGS---------  169 (767)
Q Consensus       110 VtsVaFSpDG~~LASgs-~DGtVrVWDl~tg~~l~~-L~g----H~--~~V~sLaf---sP~dg~lLaSgS---------  169 (767)
                      -.+++|.+....|..++ ..++|..||...+..... +.+    ..  ..+..|.|   .| ++++++...         
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTTS
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccccc
Confidence            45788988555555554 799999999986654333 222    11  13578999   68 677777543         


Q ss_pred             ----CCCeEEEEECC---CCeEEEeecC--------------CCCeEEEEEcCCCCEEEEEECC--cEEEEEcCCCcccc
Q 004217          170 ----LDHEVRLWNAS---TAECIGSRDF--------------YRPIASIAFHASGELLAVASGH--KLYIWRYNMREETS  226 (767)
Q Consensus       170 ----~DGtVrIWDl~---tg~~i~~l~h--------------~~~VtsVafSPdG~~LAsgSdd--~V~VWDl~t~~~~~  226 (767)
                          .+..|..||+.   +++.+.....              ......++.+++|+..++++..  .|...+...... .
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~-~  172 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV-S  172 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE-E
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE-e
Confidence                26789999999   7777655331              1247899999999987777744  466666554322 1


Q ss_pred             CCeEEe----cCCCCeEEEEEccCCCeEEEEE
Q 004217          227 SPRIVL----RTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       227 ~~~~l~----~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                       .....    ......+.|+++|||+.|++..
T Consensus       173 -~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~  203 (334)
T 2p9w_A          173 -TFAWESGNGGQRPGYSGITFDPHSNKLIAFG  203 (334)
T ss_dssp             -EEEECCCCSSSCCSCSEEEEETTTTEEEEES
T ss_pred             -eeeecCCCcccccCcceEEEeCCCCEEEEEc
Confidence             01111    1123467999999999777663

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.08  E-value=0.03  Score=66.05  Aligned_cols=163  Identities=10%  Similarity=0.020  Sum_probs=99.5

Q ss_pred             CCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEE-eCCCeEEEEECCC----CeEEEEEccCCCCcEEEEEccC
Q 004217           89 EAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQT----GSCLKVLHGHRRTPWVVRFHPL  160 (767)
Q Consensus        89 ~DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASg-s~DGtVrVWDl~t----g~~l~~L~gH~~~V~sLafsP~  160 (767)
                      ....|+..++....   +......+..|+|++++..|+.+ ...+.|+.+++.+    ......+......+..|++.+.
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            44567777776542   33334567789999876666555 4467899999875    2222222212234566888764


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEE-C--CcEEEEEcCCCccccCCeEEecCCC
Q 004217          161 NPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVAS-G--HKLYIWRYNMREETSSPRIVLRTRR  236 (767)
Q Consensus       161 dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgS-d--d~V~VWDl~t~~~~~~~~~l~~h~~  236 (767)
                      +++++++-...+.|.++|+........+. .......|+++|.+.+|+.+. .  ++|.++++.......   .....-.
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~---l~~~~l~  540 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVTENIQ  540 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE---ESCSSCS
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE---EEeCCCC
Confidence            66777776677899999987655444333 234567889999766555544 2  348888776433211   1112234


Q ss_pred             CeEEEEEccCCCeEEEEE
Q 004217          237 SLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       237 ~VtsVaFSPDG~~LlaSg  254 (767)
                      ..+.|+|+|++..|..+-
T Consensus       541 ~PnGlavd~~~~~LY~aD  558 (699)
T 1n7d_A          541 WPNGITLDLLSGRLYWVD  558 (699)
T ss_dssp             SCCCEEECTTTCCEEEEE
T ss_pred             CccEEEEeccCCEEEEEe
Confidence            567899999887777654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.06  E-value=0.54  Score=50.72  Aligned_cols=178  Identities=9%  Similarity=0.009  Sum_probs=108.2

Q ss_pred             EEEEcCCCEEEEEe-CCCeEEEEeCCCCC-----CCC----CC--CCeEEEEE---CCCCCeEEEEe-------------
Q 004217           75 EAGRDARRGLASWV-EAESLHHLRPKYCP-----LSP----PP--RSTIAAAF---SPDGKTLASTH-------------  126 (767)
Q Consensus        75 vA~sd~g~~LaSgs-~DgsIrlWd~~t~~-----L~g----H~--~sVtsVaF---SpDG~~LASgs-------------  126 (767)
                      ..+...+..++.++ ..++|..|+...+.     +.+    ..  ..+..|.|   .++++++++..             
T Consensus        18 ~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~   97 (334)
T 2p9w_A           18 TIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSH   97 (334)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSS
T ss_pred             ccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccC
Confidence            44444344444443 67888888876431     111    11  13589999   68887777543             


Q ss_pred             CCCeEEEEECC---CCeEEEEEc--cC-----------CCCcEEEEEccCCCcEEEEEeCC-CeEEEEECCCCeEEEee-
Q 004217          127 GDHTVKIIDCQ---TGSCLKVLH--GH-----------RRTPWVVRFHPLNPTIIASGSLD-HEVRLWNASTAECIGSR-  188 (767)
Q Consensus       127 ~DGtVrVWDl~---tg~~l~~L~--gH-----------~~~V~sLafsP~dg~lLaSgS~D-GtVrIWDl~tg~~i~~l-  188 (767)
                      .+..|..||+.   +++.+....  ..           ......++..+ +++..++++.. +.|...+.......... 
T Consensus        98 g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~  176 (334)
T 2p9w_A           98 GASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGKTVSTFAW  176 (334)
T ss_dssp             SCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSCCEEEEEE
T ss_pred             CCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeee
Confidence            26789999999   777654432  11           12477899999 89999998888 88777776644322221 


Q ss_pred             cC-----CCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCccccCCeEEe--cC---CCCeEEE-EEccCCCeEEEEEe
Q 004217          189 DF-----YRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVL--RT---RRSLRAV-HFHPHAAPLLLTAE  255 (767)
Q Consensus       189 ~h-----~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~--~h---~~~VtsV-aFSPDG~~LlaSgs  255 (767)
                      ..     ....+.|+++|+|+.|++... ++|..+|+++....  .....  +.   -.....+ .--.+|+.++++..
T Consensus       177 ~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~--~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~  253 (334)
T 2p9w_A          177 ESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW--PEPVKINGDFGTLSGTEKIVTVPVGNESVLVGAR  253 (334)
T ss_dssp             CCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC--CEECEESSCCCCCTTEEEEEEEEETTEEEEEEEE
T ss_pred             cCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce--eecccccCCcccccCcccccccccCCEEEEEEcC
Confidence            11     223678999999998777754 44999998843220  11111  21   1223443 33457887666654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.91  E-value=0.17  Score=57.45  Aligned_cols=149  Identities=13%  Similarity=0.054  Sum_probs=95.7

Q ss_pred             eEEEEEEc--CCCEEEEEeCCCeEEEEeCCCCCCC---C----CCCCeEEEEE-------CCCCCeEEEEeCCC------
Q 004217           72 QIFEAGRD--ARRGLASWVEAESLHHLRPKYCPLS---P----PPRSTIAAAF-------SPDGKTLASTHGDH------  129 (767)
Q Consensus        72 ~~~vA~sd--~g~~LaSgs~DgsIrlWd~~t~~L~---g----H~~sVtsVaF-------SpDG~~LASgs~DG------  129 (767)
                      +..+++..  ++...++....+.|++.|.+.+.+.   .    .......|+|       +++|++|+.+...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            55667764  3444455555577999998876322   1    2235899999       99999777665543      


Q ss_pred             -eEEEEECCC-CeEE-----EEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC-------CCeE-----------
Q 004217          130 -TVKIIDCQT-GSCL-----KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-------TAEC-----------  184 (767)
Q Consensus       130 -tVrVWDl~t-g~~l-----~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~-------tg~~-----------  184 (767)
                       .|.+++... +...     ..+... .....++++|.++.++++-..++.|..+|+.       ++..           
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             ceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence             366666443 2221     222211 2346788999677778888888999999987       5543           


Q ss_pred             ---EEeecCCCCeEEEEEcCCCCEEEEEEC--CcEEEEEcCC
Q 004217          185 ---IGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRYNM  221 (767)
Q Consensus       185 ---i~~l~h~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~t  221 (767)
                         +...........++|+|+|++|..+..  +.|+.+|...
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence               122333445689999999997666653  4488877643

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.84  E-value=0.66  Score=50.36  Aligned_cols=161  Identities=11%  Similarity=0.069  Sum_probs=97.7

Q ss_pred             CCCeEEEEeCCCC--C-----CCC-----CCCCeEEEEECC--CCC-eEEEE-eC--CCeEEEEECCCC--e--EEEEEc
Q 004217           89 EAESLHHLRPKYC--P-----LSP-----PPRSTIAAAFSP--DGK-TLAST-HG--DHTVKIIDCQTG--S--CLKVLH  146 (767)
Q Consensus        89 ~DgsIrlWd~~t~--~-----L~g-----H~~sVtsVaFSp--DG~-~LASg-s~--DGtVrVWDl~tg--~--~l~~L~  146 (767)
                      .+|.|.++|.++.  +     +.+     ..-....+.+.+  +++ +|+.+ ..  +.+|.||+++.+  .  .+..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            6888999998742  1     112     223567777765  454 34444 33  467888877543  2  234444


Q ss_pred             cCC-CCcEEEEEccCCCcEEEEEeC-----------------CCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEE
Q 004217          147 GHR-RTPWVVRFHPLNPTIIASGSL-----------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAV  208 (767)
Q Consensus       147 gH~-~~V~sLafsP~dg~lLaSgS~-----------------DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAs  208 (767)
                      +.. ...+.+.+.+ ++.++++...                 .+.|.-+|.  ++.......-...+.++|+||++.|.+
T Consensus       161 g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYv  237 (355)
T 3sre_A          161 HKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYI  237 (355)
T ss_dssp             CTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEE
T ss_pred             cCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEE
Confidence            432 3578899999 8888877641                 244555554  333333333455789999999998888


Q ss_pred             EEC--CcEEEEEcCCCccccCCeEEecCCCCeEEEEEcc-CCCeEEEE
Q 004217          209 ASG--HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHP-HAAPLLLT  253 (767)
Q Consensus       209 gSd--d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSP-DG~~LlaS  253 (767)
                      +..  ++|+.||+.....+.....+ ........+++.+ +|+.++++
T Consensus       238 adt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          238 AELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEE
T ss_pred             EeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEe
Confidence            773  45999998743222211222 3356678899999 59855544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.82  E-value=0.063  Score=62.87  Aligned_cols=145  Identities=13%  Similarity=0.068  Sum_probs=92.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC----C-CCCCeEEEEECC--CCCeEEEEeC------CCeEEEEECCCCeEEEEEcc
Q 004217           81 RRGLASWVEAESLHHLRPKYCPLS----P-PPRSTIAAAFSP--DGKTLASTHG------DHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t~~L~----g-H~~sVtsVaFSp--DG~~LASgs~------DGtVrVWDl~tg~~l~~L~g  147 (767)
                      +..|+.++.|+.|..+|.+++++.    . .......+..+|  .+..++.+..      ++.|..+|.++|+.+..+..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            456777888999999998887421    1 100000111112  1334555443      58999999999999887752


Q ss_pred             CC---C----------------------------CcEEEEEccCCCcEEEEEeCCC-------------------eEEEE
Q 004217          148 HR---R----------------------------TPWVVRFHPLNPTIIASGSLDH-------------------EVRLW  177 (767)
Q Consensus       148 H~---~----------------------------~V~sLafsP~dg~lLaSgS~DG-------------------tVrIW  177 (767)
                      ..   .                            ....+++.| +.++++.+..++                   .|..+
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            11   0                            012467888 667787777665                   49999


Q ss_pred             ECCCCeEEEeecC---C-------CCeEEEEEcCCCC---EEEEEECCc-EEEEEcCCCcccc
Q 004217          178 NASTAECIGSRDF---Y-------RPIASIAFHASGE---LLAVASGHK-LYIWRYNMREETS  226 (767)
Q Consensus       178 Dl~tg~~i~~l~h---~-------~~VtsVafSPdG~---~LAsgSdd~-V~VWDl~t~~~~~  226 (767)
                      |.++++.+..+..   .       .+.....+..+|+   .|+.++.++ ++++|..+++.+.
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~  338 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLIS  338 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence            9999999887642   1       2333333334675   577776555 9999999998754

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=95.72  E-value=0.046  Score=63.08  Aligned_cols=82  Identities=17%  Similarity=0.255  Sum_probs=57.7

Q ss_pred             CCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeE--EEEEcCCCC-
Q 004217          128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIA--SIAFHASGE-  204 (767)
Q Consensus       128 DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~Vt--sVafSPdG~-  204 (767)
                      +|.|..||+.+|+.+.+..... .+..-.... .+.+++.++.|+.++.||.++++.+..+.....+.  -+.|..+|+ 
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence            5889999999999887765432 222111122 35678889999999999999999999876544443  366777887 


Q ss_pred             EEEEEEC
Q 004217          205 LLAVASG  211 (767)
Q Consensus       205 ~LAsgSd  211 (767)
                      |+++.+.
T Consensus       543 Yv~~~~G  549 (582)
T 1flg_A          543 YLGVTVG  549 (582)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcc
Confidence            5655554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.71  E-value=0.11  Score=57.52  Aligned_cols=144  Identities=13%  Similarity=0.067  Sum_probs=85.2

Q ss_pred             CCeEEEEECCC--CCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCC---Ce-EEEEECCC
Q 004217          108 RSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD---HE-VRLWNAST  181 (767)
Q Consensus       108 ~sVtsVaFSpD--G~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~D---Gt-VrIWDl~t  181 (767)
                      .....|+|+++  ...|+.+...+.|+.+|..+++... +.........++|++ +++++++....   .. +...+...
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGG
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCC
Confidence            45678999985  4456555554899999998887544 444455688999999 77766654422   22 33333221


Q ss_pred             CeE-EEeecCCCCeEEEEEcC-CCCEEEEEEC-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          182 AEC-IGSRDFYRPIASIAFHA-SGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       182 g~~-i~~l~h~~~VtsVafSP-dG~~LAsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      +.. ...+........++++| +|.+.++-.. +.|+.+|..++..... ....+....-..++|+|+|++|.++.
T Consensus       217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~-~~~~~~~~~~~~ia~dpdG~~LYvad  291 (433)
T 4hw6_A          217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE-EVMMDTKGSNFHIVWHPTGDWAYIIY  291 (433)
T ss_dssp             TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE-EEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred             CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE-EeccCCCCCcccEEEeCCCCEEEEEe
Confidence            111 01122234456788999 6665544433 4499999876654120 11111223345799999999666654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.63  E-value=0.03  Score=64.40  Aligned_cols=81  Identities=9%  Similarity=0.074  Sum_probs=55.1

Q ss_pred             CCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCe--EEEEEcCCCCE
Q 004217          128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI--ASIAFHASGEL  205 (767)
Q Consensus       128 DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~V--tsVafSPdG~~  205 (767)
                      ++.|..||..+++.+.++... ..+....+.. .+.+++.++.|+.|+.||.++++.+..+.....+  ..+.+..+|+.
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~  520 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEES-SCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCeEEEEECCCCCEEEEecCC-CCccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEE
Confidence            578999999999988777533 2232222233 3566777899999999999999999887643332  22445678875


Q ss_pred             EEEEE
Q 004217          206 LAVAS  210 (767)
Q Consensus       206 LAsgS  210 (767)
                      ++...
T Consensus       521 yv~~~  525 (571)
T 2ad6_A          521 YIGSM  525 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.56  E-value=0.93  Score=52.61  Aligned_cols=164  Identities=9%  Similarity=-0.024  Sum_probs=103.9

Q ss_pred             eCCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCeEEEEe-CCCeEEEEECCCCeE-EEEEccCCCCcEEEEEccC
Q 004217           88 VEAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSC-LKVLHGHRRTPWVVRFHPL  160 (767)
Q Consensus        88 s~DgsIrlWd~~t~~-----L~gH~~sVtsVaFSpDG~~LASgs-~DGtVrVWDl~tg~~-l~~L~gH~~~V~sLafsP~  160 (767)
                      .+.+.|+..++....     +...-....+++|++.+..|+.+. ..+.|..++++.... ...+...-..+..+++.+.
T Consensus        15 ~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~   94 (619)
T 3s94_A           15 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL   94 (619)
T ss_dssp             ECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETT
T ss_pred             eccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEec
Confidence            346667777775431     223455688999999666665554 467899999876532 2333333356889999986


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEEC---CcEEEEEcCCCccccCCeEEecCCC
Q 004217          161 NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRR  236 (767)
Q Consensus       161 dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSd---d~V~VWDl~t~~~~~~~~~l~~h~~  236 (767)
                      +++++++-...+.|.+.|+......... ..-.....|+++|.+.+|+.+..   .+|...++.......   .....-.
T Consensus        95 ~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~---l~~~~~~  171 (619)
T 3s94_A           95 GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI---IINSEIY  171 (619)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---EECSSCS
T ss_pred             CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEE---EEeCCCC
Confidence            6777777778899999999765443333 33455678999998766666653   237777766543211   2223345


Q ss_pred             CeEEEEEccCCCeEEEEE
Q 004217          237 SLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       237 ~VtsVaFSPDG~~LlaSg  254 (767)
                      ..+.|++++++..|..+-
T Consensus       172 ~P~Glald~~~~~LY~aD  189 (619)
T 3s94_A          172 WPNGLTLDYEEQKLYWAD  189 (619)
T ss_dssp             SEEEEEEETTTTEEEEEE
T ss_pred             CCcEEEEEccCCEEEEEe
Confidence            678999999887776663

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.45  E-value=0.22  Score=56.60  Aligned_cols=145  Identities=10%  Similarity=0.061  Sum_probs=86.4

Q ss_pred             CeEEEEECC-CCCeEEEEeC-CCeEEEEECCCCeEEEEEccC---CCCcEEEEE-------ccCCCcEEEEEeCCC----
Q 004217          109 STIAAAFSP-DGKTLASTHG-DHTVKIIDCQTGSCLKVLHGH---RRTPWVVRF-------HPLNPTIIASGSLDH----  172 (767)
Q Consensus       109 sVtsVaFSp-DG~~LASgs~-DGtVrVWDl~tg~~l~~L~gH---~~~V~sLaf-------sP~dg~lLaSgS~DG----  172 (767)
                      ....|+|+| +...|+.+.. .+.|++.|++++.....+..-   ......|+|       ++ +++.|+.+...+    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence            467899998 4555555544 467999999888765544332   224789999       99 677455544433    


Q ss_pred             ---eEEEEECCC-CeEE-----EeecCCCCeEEEEEcCCCCEEEEEE-C-CcEEEEEcC-------CCccc-----c---
Q 004217          173 ---EVRLWNAST-AECI-----GSRDFYRPIASIAFHASGELLAVAS-G-HKLYIWRYN-------MREET-----S---  226 (767)
Q Consensus       173 ---tVrIWDl~t-g~~i-----~~l~h~~~VtsVafSPdG~~LAsgS-d-d~V~VWDl~-------t~~~~-----~---  226 (767)
                         .|.+++... ++..     ..+........++++|++.+|..+. . +.|..+|+.       ++...     .   
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence               266666433 2221     1222123445778999666555554 3 349999987       44430     0   


Q ss_pred             --CCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          227 --SPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       227 --~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                        ......+.....+.|+|+|+|++|.++-
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD  328 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGV  328 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence              0011122344568999999999655553

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.40  E-value=1.9  Score=45.16  Aligned_cols=143  Identities=14%  Similarity=0.108  Sum_probs=84.3

Q ss_pred             CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEE-EccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEEC--CCC
Q 004217          106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA--STA  182 (767)
Q Consensus       106 H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~-L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl--~tg  182 (767)
                      +...+..+.+.++++.++.+ .++.|.. ..+.|+.-.. ..++...+..+.+.+ ++.+++.+...+..+-+|-  .+.
T Consensus       120 ~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~tW  196 (327)
T 2xbg_A          120 LPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQTAW  196 (327)
T ss_dssp             CSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTCSSC
T ss_pred             CCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCCCce
Confidence            44568888888777766655 4554432 2233443332 245566788999999 7777776655444444553  333


Q ss_pred             eEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEE-ecCCCCeEEEEEccCCCeEEE
Q 004217          183 ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIV-LRTRRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       183 ~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l-~~h~~~VtsVaFSPDG~~Lla  252 (767)
                      +.+. ......+..+++.+++++++++.++.+++.+.+.++.......- ..+...+.++.|.+++..+++
T Consensus       197 ~~~~-~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~  266 (327)
T 2xbg_A          197 EPHN-RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLA  266 (327)
T ss_dssp             EEEE-CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEE
T ss_pred             eECC-CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEE
Confidence            3332 23456788999999998887766665777643323221111000 112346889999988774444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.12  E-value=0.57  Score=50.96  Aligned_cols=129  Identities=14%  Similarity=0.139  Sum_probs=89.8

Q ss_pred             CCeEEEEeC--CCCCCC---C------CC-CCeEEEEE--CCC-CC-eEEEEeCCCeEEEEECC-------CCeEEEEEc
Q 004217           90 AESLHHLRP--KYCPLS---P------PP-RSTIAAAF--SPD-GK-TLASTHGDHTVKIIDCQ-------TGSCLKVLH  146 (767)
Q Consensus        90 DgsIrlWd~--~t~~L~---g------H~-~sVtsVaF--SpD-G~-~LASgs~DGtVrVWDl~-------tg~~l~~L~  146 (767)
                      +++|.+|++  .+.++.   .      .. ..+..+++  +++ ++ +++....+|.+..|++.       +.+.+++|.
T Consensus        98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A           98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence            578888955  444321   1      11 56677888  774 54 57788889999999982       335667776


Q ss_pred             cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC-----CCeEEEeecC---CCCeEEEEE--cCCCC-EEEEEE--CCc
Q 004217          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-----TAECIGSRDF---YRPIASIAF--HASGE-LLAVAS--GHK  213 (767)
Q Consensus       147 gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~-----tg~~i~~l~h---~~~VtsVaf--SPdG~-~LAsgS--dd~  213 (767)
                      - ...+..+...+ ....|+.+-+|..|..+|.+     +++.+..+..   ...+..|++  .++|+ +|++++  ++.
T Consensus       178 l-gsq~EgcvvDd-~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s  255 (355)
T 3amr_A          178 M-NSQTEGMAADD-EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS  255 (355)
T ss_dssp             C-SSCEEEEEEET-TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             C-CCCcceEEEcC-CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence            4 45788899988 77888888898877777865     3556655532   246888887  56666 777777  345


Q ss_pred             EEEEEcC
Q 004217          214 LYIWRYN  220 (767)
Q Consensus       214 V~VWDl~  220 (767)
                      ..+||..
T Consensus       256 ~~Vydr~  262 (355)
T 3amr_A          256 YAIYDRQ  262 (355)
T ss_dssp             EEEEESS
T ss_pred             EEEEECC
Confidence            9999986

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.02  E-value=3.2  Score=48.23  Aligned_cols=177  Identities=6%  Similarity=-0.097  Sum_probs=112.0

Q ss_pred             eEEEEEEcCCCE-EEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeE-EEEeCCCeEEEEECCCCeEEEEE
Q 004217           72 QIFEAGRDARRG-LASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        72 ~~~vA~sd~g~~-LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~L-ASgs~DGtVrVWDl~tg~~l~~L  145 (767)
                      +..+++...... .++-..++.|..+++....    +..-......+++...+..| ++-...+.|.+.+++.......+
T Consensus        39 ~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~  118 (628)
T 4a0p_A           39 ASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLV  118 (628)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEE
T ss_pred             eEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEE
Confidence            455666544444 4455567888888876532    11122457789998765555 44455788999998755433333


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEE-eCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC--CcEEEEEcCCC
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASG-SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMR  222 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSg-S~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~t~  222 (767)
                      ...-.....|+++|.++.++++- +..+.|...++...........-.....+++++++..|..+..  +.|..+|+...
T Consensus       119 ~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          119 WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence            34445678999999556666654 2356788888876554444445567889999999888877764  44999998765


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       223 ~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      .. .   .+.........|++..  ..+..+.
T Consensus       199 ~~-~---v~~~~l~~P~glav~~--~~ly~tD  224 (628)
T 4a0p_A          199 NR-E---VIADDLPHPFGLTQYQ--DYIYWTD  224 (628)
T ss_dssp             SC-E---EEEECCSCEEEEEEET--TEEEEEE
T ss_pred             ce-E---EeeccCCCceEEEEEC--CEEEEec
Confidence            43 2   2333344556787764  3455553

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.00  E-value=0.56  Score=50.19  Aligned_cols=99  Identities=19%  Similarity=0.216  Sum_probs=61.7

Q ss_pred             CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE--EEEc---cCCCCcEEEEEccC---CCcEEEEEeCC-----CeEE
Q 004217          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVLH---GHRRTPWVVRFHPL---NPTIIASGSLD-----HEVR  175 (767)
Q Consensus       109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l--~~L~---gH~~~V~sLafsP~---dg~lLaSgS~D-----GtVr  175 (767)
                      .-..++|.|||+++++ ..++.|++++  +++..  ..+.   ........|+|+|+   ++.++++-..+     +.|.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            4679999999985554 5679999998  45422  2121   12346789999993   25555554433     6788


Q ss_pred             EEECCCCeE-----EEe-ecC----CCCeEEEEEcCCCCEEEEEE
Q 004217          176 LWNASTAEC-----IGS-RDF----YRPIASIAFHASGELLAVAS  210 (767)
Q Consensus       176 IWDl~tg~~-----i~~-l~h----~~~VtsVafSPdG~~LAsgS  210 (767)
                      .|+...+..     +.. +..    ......++|.|+|.+.++.+
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            888765421     111 221    12346899999997655543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.93  E-value=1.3  Score=49.45  Aligned_cols=143  Identities=13%  Similarity=0.102  Sum_probs=93.7

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-C---CCC----CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe---
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-P---LSP----PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---  140 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-~---L~g----H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~---  140 (767)
                      .++.....++..++.+. ++.||..++... .   +.-    --..|..+..||+|++||..+ +..|.|-.+..+.   
T Consensus        23 ~R~~~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~  100 (452)
T 3pbp_A           23 PRYIFSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNV  100 (452)
T ss_dssp             CEEEEEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCC
T ss_pred             CcEEEEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccC
Confidence            34445556777777664 578888877632 1   111    123678899999999999876 4689998886321   


Q ss_pred             ---------EEEEEcc------CCCCcEEEEEccCC--CcEEEEEeCCCeEEEEECCCCe--EEEee-------c---CC
Q 004217          141 ---------CLKVLHG------HRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTAE--CIGSR-------D---FY  191 (767)
Q Consensus       141 ---------~l~~L~g------H~~~V~sLafsP~d--g~lLaSgS~DGtVrIWDl~tg~--~i~~l-------~---h~  191 (767)
                               ..+.+.-      ....|..+.|||..  +..|++-..|++|++||+....  +. .+       +   ..
T Consensus       101 ~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~  179 (452)
T 3pbp_A          101 EDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARV  179 (452)
T ss_dssp             CCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSC
T ss_pred             cccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCccc
Confidence                     1223321      24679999999953  3489999999999999998621  22 22       1   22


Q ss_pred             CCeEEEEEcCCCCEEEEEE--CCc-EEEE
Q 004217          192 RPIASIAFHASGELLAVAS--GHK-LYIW  217 (767)
Q Consensus       192 ~~VtsVafSPdG~~LAsgS--dd~-V~VW  217 (767)
                      ..|.+++|..++-.|...+  .++ |+-.
T Consensus       180 ~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          180 NDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            6788899988776555543  433 5443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=94.85  E-value=3.5  Score=47.72  Aligned_cols=143  Identities=13%  Similarity=0.123  Sum_probs=88.5

Q ss_pred             CCEEEEEeC-CCeEEEEeC-CCCCC------CCCC---------CCeEEEEECCCCCe----EEEEeCCCeEEEEECCCC
Q 004217           81 RRGLASWVE-AESLHHLRP-KYCPL------SPPP---------RSTIAAAFSPDGKT----LASTHGDHTVKIIDCQTG  139 (767)
Q Consensus        81 g~~LaSgs~-DgsIrlWd~-~t~~L------~gH~---------~sVtsVaFSpDG~~----LASgs~DGtVrVWDl~tg  139 (767)
                      +..|+..+. ++.|.-+|. .+++.      ....         .....++++|++..    |+.++.|+.|.-+|.++|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            345555555 667777777 56531      1100         01123556544444    888889999999999999


Q ss_pred             eEEEEEccCC----CCcE-EEEEccCCCcEEEEEe------CCCeEEEEECCCCeEEEeecCCCCe--------------
Q 004217          140 SCLKVLHGHR----RTPW-VVRFHPLNPTIIASGS------LDHEVRLWNASTAECIGSRDFYRPI--------------  194 (767)
Q Consensus       140 ~~l~~L~gH~----~~V~-sLafsP~dg~lLaSgS------~DGtVrIWDl~tg~~i~~l~h~~~V--------------  194 (767)
                      +.+.......    ..+. .....  ++. ++.++      .++.|+.+|.++|+.+..+......              
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~--~g~-V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~  218 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV--KDK-VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP  218 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE--TTE-EEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             CEEEeecCCCCCccceeecCCEEE--CCE-EEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence            9887764321    0111 11121  344 44444      3899999999999998775432221              


Q ss_pred             -------------------------EEEEEcCCCCEEEEEECC-----------------cEEEEEcCCCcccc
Q 004217          195 -------------------------ASIAFHASGELLAVASGH-----------------KLYIWRYNMREETS  226 (767)
Q Consensus       195 -------------------------tsVafSPdG~~LAsgSdd-----------------~V~VWDl~t~~~~~  226 (767)
                                               ..++++++..+|+.+..+                 .|..+|.++++...
T Consensus       219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W  292 (599)
T 1w6s_A          219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKF  292 (599)
T ss_dssp             GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEE
T ss_pred             cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceee
Confidence                                     135677777777777642                 59999999998755

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.67  E-value=0.91  Score=49.09  Aligned_cols=141  Identities=16%  Similarity=0.119  Sum_probs=81.0

Q ss_pred             CCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE--EEE----ccCCCCcEEEEEccC---CCcEEEEEe--CCCeEEE
Q 004217          108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVL----HGHRRTPWVVRFHPL---NPTIIASGS--LDHEVRL  176 (767)
Q Consensus       108 ~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l--~~L----~gH~~~V~sLafsP~---dg~lLaSgS--~DGtVrI  176 (767)
                      .....|+|.|||+++++--..|.|++++..+++..  ..+    .........|+|+|+   ++.++++-+  .++.|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            34689999999987776655899999987666532  222    122456789999993   344555422  4556666


Q ss_pred             EECCCC----------eEEEe-ec--CCCCeEEEEEcCCCCEEEEEEC--------------CcEEEEEcCCCccc----
Q 004217          177 WNASTA----------ECIGS-RD--FYRPIASIAFHASGELLAVASG--------------HKLYIWRYNMREET----  225 (767)
Q Consensus       177 WDl~tg----------~~i~~-l~--h~~~VtsVafSPdG~~LAsgSd--------------d~V~VWDl~t~~~~----  225 (767)
                      |.+..+          +.+.. +.  .......|+|.|||.+.++.++              ++|.-.+....-..    
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf  191 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF  191 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence            665541          11111 22  1223457999999986666442              23444444322000    


Q ss_pred             -cCCeEEecCCCCeEEEEEccCCCe
Q 004217          226 -SSPRIVLRTRRSLRAVHFHPHAAP  249 (767)
Q Consensus       226 -~~~~~l~~h~~~VtsVaFSPDG~~  249 (767)
                       .......+|+ ....++|+|+|..
T Consensus       192 ~~~~i~a~G~R-Np~Gla~dp~G~L  215 (347)
T 3das_A          192 PGSPVYSYGHR-NVQGLAWDDKQRL  215 (347)
T ss_dssp             TTCCEEEBCCS-BCCEEEECTTCCE
T ss_pred             CCCeEEeeCCC-CcceEEECCCCCE
Confidence             0112233454 3468999998873

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.61  E-value=5.2  Score=46.34  Aligned_cols=162  Identities=6%  Similarity=-0.039  Sum_probs=104.6

Q ss_pred             CCCeEEEEeCCCCCC-----C-CCCCCeEEEEECCCCCeEE-EEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCC
Q 004217           89 EAESLHHLRPKYCPL-----S-PPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLN  161 (767)
Q Consensus        89 ~DgsIrlWd~~t~~L-----~-gH~~sVtsVaFSpDG~~LA-Sgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~d  161 (767)
                      ..+.|+..++.....     . ..-..+.+|+|++.+..|+ +-...+.|+.++.+.......+...-..+..+++.+.+
T Consensus       324 ~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~  403 (619)
T 3s94_A          324 RRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVA  403 (619)
T ss_dssp             ESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred             cccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEeccc
Confidence            455677777765421     1 1234578999998555554 44457899999987654444444344567889998756


Q ss_pred             CcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEEC---CcEEEEEcCCCccccCCeEEecCCCC
Q 004217          162 PTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRRS  237 (767)
Q Consensus       162 g~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSd---d~V~VWDl~t~~~~~~~~~l~~h~~~  237 (767)
                      ++++++-+..+.|.+.++........+ ..-.....|+++|...+|..+..   .+|...+++......   .....-..
T Consensus       404 ~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~---l~~~~l~~  480 (619)
T 3s94_A          404 RNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV---LVNTSLGW  480 (619)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---EECSSCSC
T ss_pred             CcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE---EEeCCCCC
Confidence            778888778899999998765432222 23456789999997555555542   347777766443211   22333457


Q ss_pred             eEEEEEccCCCeEEEE
Q 004217          238 LRAVHFHPHAAPLLLT  253 (767)
Q Consensus       238 VtsVaFSPDG~~LlaS  253 (767)
                      .+.|++++++..|..+
T Consensus       481 P~GlalD~~~~~LY~a  496 (619)
T 3s94_A          481 PNGLALDYDEGKIYWG  496 (619)
T ss_dssp             EEEEEEETTTTEEEEE
T ss_pred             CeeeEEcccCCEEEEE
Confidence            7899999987767665

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.61  E-value=0.61  Score=50.07  Aligned_cols=100  Identities=14%  Similarity=0.111  Sum_probs=61.6

Q ss_pred             CeEEEEECCCCCeEEEEeCCCeEEEEECCCCe-EEEEEc---cCCCCcEEEEEccC---CCcEEEEEeC---C----CeE
Q 004217          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLH---GHRRTPWVVRFHPL---NPTIIASGSL---D----HEV  174 (767)
Q Consensus       109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~-~l~~L~---gH~~~V~sLafsP~---dg~lLaSgS~---D----GtV  174 (767)
                      ....++|.|||++++ +..++.|+++| .+++ .+..+.   ........|+|+|+   ++.++++-+.   +    ..|
T Consensus        30 ~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             CEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            468999999998555 45669999997 4555 222221   12345789999993   3556555442   3    567


Q ss_pred             EEEECCCC--e-----EEEe-ec--CCCCeEEEEEcCCCCEEEEEE
Q 004217          175 RLWNASTA--E-----CIGS-RD--FYRPIASIAFHASGELLAVAS  210 (767)
Q Consensus       175 rIWDl~tg--~-----~i~~-l~--h~~~VtsVafSPdG~~LAsgS  210 (767)
                      ..|+....  .     .+.. +.  .......++|.|||.+.++.+
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            77877654  1     1111 22  112346799999998666543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.29  E-value=0.61  Score=49.93  Aligned_cols=142  Identities=17%  Similarity=0.066  Sum_probs=78.2

Q ss_pred             CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc-------cCCCCcEEEEEccC---CCcEEEEEeC-------C
Q 004217          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-------GHRRTPWVVRFHPL---NPTIIASGSL-------D  171 (767)
Q Consensus       109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~-------gH~~~V~sLafsP~---dg~lLaSgS~-------D  171 (767)
                      ....|+|.|||+.|+.+..+|.|++++.. ++....+.       ........|+|+|+   ++.++++-..       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            46789999999844455678999999853 43221111       12345689999994   3555555433       2


Q ss_pred             CeEEEEECCCC--eE--EEe----ec----CCCCeEEEEEcCCCCEEEEEEC--------------CcEEEEEcCCCccc
Q 004217          172 HEVRLWNASTA--EC--IGS----RD----FYRPIASIAFHASGELLAVASG--------------HKLYIWRYNMREET  225 (767)
Q Consensus       172 GtVrIWDl~tg--~~--i~~----l~----h~~~VtsVafSPdG~~LAsgSd--------------d~V~VWDl~t~~~~  225 (767)
                      ..|..|++...  +.  ...    +.    .......++|.|||.+.++.++              ++|.-+|....-..
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~  177 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD  177 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence            35666666533  11  111    11    1122457999999975555433              23666665532100


Q ss_pred             ----------cCCeEEecCCCCeEEEEEcc-CCCeEEEE
Q 004217          226 ----------SSPRIVLRTRRSLRAVHFHP-HAAPLLLT  253 (767)
Q Consensus       226 ----------~~~~~l~~h~~~VtsVaFSP-DG~~LlaS  253 (767)
                                .......++ .....++|+| +|+ |.++
T Consensus       178 ~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~-l~~~  214 (353)
T 2g8s_A          178 DNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNA-LWLN  214 (353)
T ss_dssp             TCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTE-EEEE
T ss_pred             CCCCcCCCCCCccEEEEcC-cCccceEEECCCCC-EEEE
Confidence                      111122333 3467899999 555 4443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.22  E-value=1.5  Score=48.86  Aligned_cols=102  Identities=14%  Similarity=0.172  Sum_probs=61.6

Q ss_pred             CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE--EEEcc------CCCCcEEEEEccC---CCcEEEEEeC-------
Q 004217          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVLHG------HRRTPWVVRFHPL---NPTIIASGSL-------  170 (767)
Q Consensus       109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l--~~L~g------H~~~V~sLafsP~---dg~lLaSgS~-------  170 (767)
                      ....|+|.|||+++++-...+.|++++..+++..  ..+..      .......|+|+|+   ++.++++-+.       
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            4679999999987776544457888886655432  22221      2345679999994   4555555442       


Q ss_pred             -----CCeEEEEECCCC--e-----EEEe-ec--CCCCeEEEEEcCCCCEEEEEE
Q 004217          171 -----DHEVRLWNASTA--E-----CIGS-RD--FYRPIASIAFHASGELLAVAS  210 (767)
Q Consensus       171 -----DGtVrIWDl~tg--~-----~i~~-l~--h~~~VtsVafSPdG~~LAsgS  210 (767)
                           ...|.-|++..+  +     .+.. +.  .......|+|.|||.+.++.+
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                 234555655322  1     1111 22  123478899999998666554

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=92.62  E-value=14  Score=43.09  Aligned_cols=166  Identities=10%  Similarity=0.005  Sum_probs=103.3

Q ss_pred             EEcCCCEEEEEeCCCeEEEEeCCCCCCCC----CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc----c-
Q 004217           77 GRDARRGLASWVEAESLHHLRPKYCPLSP----PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH----G-  147 (767)
Q Consensus        77 ~sd~g~~LaSgs~DgsIrlWd~~t~~L~g----H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~----g-  147 (767)
                      ..+....|+.++.+| +..+|..+.++..    ....|.++... +| .|..++.+ -+..+|..+++.. .+.    + 
T Consensus        69 ~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l  143 (758)
T 3ott_A           69 VIIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGL  143 (758)
T ss_dssp             EEETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCC
T ss_pred             EEcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCc
Confidence            345667888888665 7789987764432    23357777653 55 45556665 5788998776533 331    1 


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-c-----CCCCeEEEEEcCCCCEEEEEECCcEEEEEcCC
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-D-----FYRPIASIAFHASGELLAVASGHKLYIWRYNM  221 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~-----h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t  221 (767)
                      ....|.++.... ++.+.+ +.. +-+..+|..+++..... .     ....|.++..+.++..|..|.+++|..+|..+
T Consensus       144 ~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~  220 (758)
T 3ott_A          144 PNNTIYSIIRTK-DNQIYV-GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPST  220 (758)
T ss_dssp             SCSCEEEEEECT-TCCEEE-EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTT
T ss_pred             CCCeEEEEEEcC-CCCEEE-EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECCCCeEEcCCC
Confidence            134577887776 566655 344 45888898776643321 1     12348888888877755556556799999876


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       222 ~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      .+...   ...-....|.++....+|...+.+
T Consensus       221 ~~~~~---~~~l~~~~i~~i~~d~~g~lWigT  249 (758)
T 3ott_A          221 GQIKQ---TEAFHNNSIKSLALDGNGDLLAGT  249 (758)
T ss_dssp             TEEEE---EEEEEEEEEEEEEECTTCCEEEEE
T ss_pred             CeEEe---ccCCCCCeEEEEEEcCCCCEEEEe
Confidence            54322   111123468899988888866655

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=92.32  E-value=0.14  Score=60.46  Aligned_cols=143  Identities=9%  Similarity=-0.067  Sum_probs=83.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC---C-CCCCCCeEEEEECCCCCeEEEEeC-C-CeEEEEECCCCeEEEEE-ccCCCCcE
Q 004217           81 RRGLASWVEAESLHHLRPKYCP---L-SPPPRSTIAAAFSPDGKTLASTHG-D-HTVKIIDCQTGSCLKVL-HGHRRTPW  153 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t~~---L-~gH~~sVtsVaFSpDG~~LASgs~-D-GtVrVWDl~tg~~l~~L-~gH~~~V~  153 (767)
                      +...++-...+.|.+++.....   + .........|+++|++.+|+.+.. . +.|.++++.... ...+ ...-....
T Consensus       465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~Pn  543 (699)
T 1n7d_A          465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPN  543 (699)
T ss_dssp             SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCC
T ss_pred             CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCcc
Confidence            3334444456778888876542   1 122345678899996655554443 2 678887775432 2223 22234567


Q ss_pred             EEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec---CCCCeEEEEEcCCCCEEEEEE--CCcEEEEEcCCCcccc
Q 004217          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETS  226 (767)
Q Consensus       154 sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~---h~~~VtsVafSPdG~~LAsgS--dd~V~VWDl~t~~~~~  226 (767)
                      .|+|+|.++.++++-...+.|..+|+........+.   .......|++..+  .|+...  .+.|..+|..+++...
T Consensus       544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVN  619 (699)
T ss_dssp             CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEE
T ss_pred             EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceE
Confidence            899999667777777778899999987533332222   1122344555443  444443  2449888877666433

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=92.15  E-value=4.1  Score=42.76  Aligned_cols=126  Identities=9%  Similarity=-0.015  Sum_probs=75.3

Q ss_pred             EEEECCCCCeEEEEeCC--------------CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEe----CCCe
Q 004217          112 AAAFSPDGKTLASTHGD--------------HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS----LDHE  173 (767)
Q Consensus       112 sVaFSpDG~~LASgs~D--------------GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS----~DGt  173 (767)
                      +--|+++|++|+-+...              ..|+..+++.++... +..  .  ....|++ +++.|+-..    .+..
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~--~~~~~s~-~g~~Iy~~~~~~~~~~~  130 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--D--PCIYASL-IGNYIYYLHYDTQTATS  130 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--S--CEEEEEE-ETTEEEEEEESSSSCEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--C--CccEEEE-eCCEEEEEeecCCCCce
Confidence            34567889998877653              468888887665333 321  1  1236777 566666554    3445


Q ss_pred             EEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc--EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEE
Q 004217          174 VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (767)
Q Consensus       174 VrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~--V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Ll  251 (767)
                      |..-++......+...+..    .+|+++|+.|+-.+++.  |.+.++.......    +..  .... ..++|++.+|+
T Consensus       131 Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~----l~~--~~~~-~~~~P~g~~iy  199 (302)
T 3s25_A          131 LYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEAL----FYD--CNCY-KPVVLDDTNVY  199 (302)
T ss_dssp             EEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEE----EEC--SCEE-EEEEEETTEEE
T ss_pred             EEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEE----EeC--CCcc-ceeeecCCEEE
Confidence            5555666444443333322    45688899888777533  8888887665322    222  2222 34669999887


Q ss_pred             EEE
Q 004217          252 LTA  254 (767)
Q Consensus       252 aSg  254 (767)
                      .+.
T Consensus       200 ~t~  202 (302)
T 3s25_A          200 YMD  202 (302)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.93  E-value=0.39  Score=49.20  Aligned_cols=138  Identities=14%  Similarity=0.108  Sum_probs=81.7

Q ss_pred             CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE------EEEEc--cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC
Q 004217          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC------LKVLH--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS  180 (767)
Q Consensus       109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~------l~~L~--gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~  180 (767)
                      .+.+++|+|+|.+.+.  .+|.+.-.+..+...      -..+-  +-.. ...+.|.| ++.+.++  .||.|.-++-.
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~-~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDP-NGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECT-TSCEEEE--ETTEEEEESCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECC-CCCEEEe--CCCEEEEeCCC
Confidence            6779999999986666  677777666544211      11221  1112 47889999 8888887  56999888764


Q ss_pred             CCeEEEe------ec--CCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCcc---ccCCeEEe-cCCCCeEEEEEccCCC
Q 004217          181 TAECIGS------RD--FYRPIASIAFHASGELLAVASGHKLYIWRYNMREE---TSSPRIVL-RTRRSLRAVHFHPHAA  248 (767)
Q Consensus       181 tg~~i~~------l~--h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~---~~~~~~l~-~h~~~VtsVaFSPDG~  248 (767)
                      +.....-      +.  -=..+..|.|+|+|.+.++. ++.++-+...+...   ......+. ..-..-+-+.|.++|.
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~  194 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT  194 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence            4221111      11  11467899999999999888 77654433222211   00011222 2223345577999998


Q ss_pred             eEEEE
Q 004217          249 PLLLT  253 (767)
Q Consensus       249 ~LlaS  253 (767)
                      .+.+.
T Consensus       195 l~~v~  199 (236)
T 1tl2_A          195 LFGVQ  199 (236)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            65554

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=91.29  E-value=9.2  Score=38.83  Aligned_cols=138  Identities=15%  Similarity=0.098  Sum_probs=75.4

Q ss_pred             CCCEEEEEeCC----CeEEEEeCCCCC------CCCCCCCeEEEEECCCCCeEEEEeCC------CeEEEEECCCCeEEE
Q 004217           80 ARRGLASWVEA----ESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD------HTVKIIDCQTGSCLK  143 (767)
Q Consensus        80 ~g~~LaSgs~D----gsIrlWd~~t~~------L~gH~~sVtsVaFSpDG~~LASgs~D------GtVrVWDl~tg~~l~  143 (767)
                      ++..++.|..+    ..+.++|..+.+      +........++.+  ++++++.|+.+      ..+.+||..+.+-..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            44444444433    568888887752      2211122223333  67777888765      468999998876332


Q ss_pred             E--EccCCCCcEEEEEccCCCcEEEEEeC---------CCeEEEEECCCCeEEEee--cCCCCeEEEEEcCCCCEEEEEE
Q 004217          144 V--LHGHRRTPWVVRFHPLNPTIIASGSL---------DHEVRLWNASTAECIGSR--DFYRPIASIAFHASGELLAVAS  210 (767)
Q Consensus       144 ~--L~gH~~~V~sLafsP~dg~lLaSgS~---------DGtVrIWDl~tg~~i~~l--~h~~~VtsVafSPdG~~LAsgS  210 (767)
                      .  +.........+.+   ++++++.|+.         -..+.+||+.+.+....-  .....-.+++.. ++++++.|+
T Consensus       133 ~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG  208 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEA---NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGG  208 (306)
T ss_dssp             ECCCSSCCBSCEEEEE---TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred             CCCCcCCcceeEEEEE---CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeC
Confidence            2  1111111222222   5677777764         345889999987655442  222111222222 566666665


Q ss_pred             C------CcEEEEEcCCCc
Q 004217          211 G------HKLYIWRYNMRE  223 (767)
Q Consensus       211 d------d~V~VWDl~t~~  223 (767)
                      .      +.+.+||+.+.+
T Consensus       209 ~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          209 QNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             EETTEEBCCEEEEETTTTE
T ss_pred             CCCCCCCceEEEeeCCCCc
Confidence            2      238999988764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=90.97  E-value=5.3  Score=43.20  Aligned_cols=140  Identities=9%  Similarity=0.116  Sum_probs=80.0

Q ss_pred             eEEEEECCCCCeEEEE------------eCCCeEEEEECCC--CeEE-EEEcc-----CCCCcEEEEEccC-CC--cEEE
Q 004217          110 TIAAAFSPDGKTLAST------------HGDHTVKIIDCQT--GSCL-KVLHG-----HRRTPWVVRFHPL-NP--TIIA  166 (767)
Q Consensus       110 VtsVaFSpDG~~LASg------------s~DGtVrVWDl~t--g~~l-~~L~g-----H~~~V~sLafsP~-dg--~lLa  166 (767)
                      .-+++..++|..++++            ..+|.|.++|.++  ++.. ..+.+     ..-....+.+.++ ++  .+++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            3445555655444443            2688999999873  3321 12232     2236777887662 23  2444


Q ss_pred             EEeC--CCeEEEEECCCC--eE--EEeecC--CCCeEEEEEcCCCCEEEEEEC------------------CcEEEEEcC
Q 004217          167 SGSL--DHEVRLWNASTA--EC--IGSRDF--YRPIASIAFHASGELLAVASG------------------HKLYIWRYN  220 (767)
Q Consensus       167 SgS~--DGtVrIWDl~tg--~~--i~~l~h--~~~VtsVafSPdG~~LAsgSd------------------d~V~VWDl~  220 (767)
                      .-..  +.+|.+|++...  ..  +..+.+  -...+.+++.++|++.++...                  +.|+.+|. 
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-  210 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-  210 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence            4333  567888876643  22  222332  346789999999998877641                  11444443 


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                       ++    ...+...-..-+.++|+||+++|.++-.
T Consensus       211 -~~----~~~~~~~l~~pNGia~spDg~~lYvadt  240 (355)
T 3sre_A          211 -ND----VRVVAEGFDFANGINISPDGKYVYIAEL  240 (355)
T ss_dssp             -TC----CEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             -Ce----EEEeecCCcccCcceECCCCCEEEEEeC
Confidence             32    1233333456789999999998877654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=89.75  E-value=8.1  Score=43.12  Aligned_cols=131  Identities=14%  Similarity=0.159  Sum_probs=80.9

Q ss_pred             CCCCeEEEEeCCCeEEEEECCCCeEEEEEccC----CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe---------
Q 004217          117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH----RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE---------  183 (767)
Q Consensus       117 pDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH----~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~---------  183 (767)
                      .+|..|+.+- ++.||.-++..+..-+.++-.    -..|..+..+| ++++|+..+ +.+|.|-.+..+.         
T Consensus        30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred             cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence            3555555544 367887777644333444332    23688899999 889888875 5689998887322         


Q ss_pred             ---EEEee--c-----CCCCeEEEEEcCCCC---EEEEEE-CCcEEEEEcCCCccccCCeEEe---------cCCCCeEE
Q 004217          184 ---CIGSR--D-----FYRPIASIAFHASGE---LLAVAS-GHKLYIWRYNMREETSSPRIVL---------RTRRSLRA  240 (767)
Q Consensus       184 ---~i~~l--~-----h~~~VtsVafSPdG~---~LAsgS-dd~V~VWDl~t~~~~~~~~~l~---------~h~~~Vts  240 (767)
                         ..+.+  +     ...+|..+.|||-+.   .|++-. ++.|++||+.....  .+..+.         .....|.+
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~--~P~~L~k~~~~fg~d~~~~ev~S  184 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE--KPIVLNKPNNSFGLDARVNDITD  184 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS--CCEEESCCCSEEESCSSCCCEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC--CCcchhccccccCCCcccceEEE
Confidence               11122  1     246799999999663   555555 55599999986332  111111         12256788


Q ss_pred             EEEccCCCeEEE
Q 004217          241 VHFHPHAAPLLL  252 (767)
Q Consensus       241 VaFSPDG~~Lla  252 (767)
                      ++|..++-.|.+
T Consensus       185 ~~Fg~~~lTLYv  196 (452)
T 3pbp_A          185 LEFSKDGLTLYC  196 (452)
T ss_dssp             EEECTTSSCEEE
T ss_pred             EEEcCCCcEEEE
Confidence            888886654443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=89.46  E-value=10  Score=40.31  Aligned_cols=136  Identities=14%  Similarity=0.053  Sum_probs=75.9

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC-CC------CCCCCCeEEEEECCC---CCeEEEEeC----C----CeEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-PL------SPPPRSTIAAAFSPD---GKTLASTHG----D----HTVKI  133 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~-~L------~gH~~sVtsVaFSpD---G~~LASgs~----D----GtVrV  133 (767)
                      +..+++..++. |+....++.|++++.... .+      .........|+|+|+   +..|..+..    +    ..|..
T Consensus        31 P~~ia~~pdG~-l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r  109 (354)
T 3a9g_A           31 PWSIAPLGGGR-YLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIR  109 (354)
T ss_dssp             EEEEEEEETTE-EEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEE
T ss_pred             CeEEEEcCCCe-EEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEE
Confidence            45566656665 444455688888864321 11      112356899999997   555554433    3    56777


Q ss_pred             EECCCC--e-----EE-EEEcc-CCCCcEEEEEccCCCcEEEEEeC-------------CCeEEEEECCCC---------
Q 004217          134 IDCQTG--S-----CL-KVLHG-HRRTPWVVRFHPLNPTIIASGSL-------------DHEVRLWNASTA---------  182 (767)
Q Consensus       134 WDl~tg--~-----~l-~~L~g-H~~~V~sLafsP~dg~lLaSgS~-------------DGtVrIWDl~tg---------  182 (767)
                      |+...+  .     .+ ..+.. .......|.|.| ++.++++.+.             .+.|.-+|....         
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~  188 (354)
T 3a9g_A          110 GRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPN  188 (354)
T ss_dssp             EEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTT
T ss_pred             EEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCC
Confidence            887654  1     11 11221 112346799999 8887777432             245655555421         


Q ss_pred             eEEEeecCCCCeEEEEEcC-CCCEEEEEE
Q 004217          183 ECIGSRDFYRPIASIAFHA-SGELLAVAS  210 (767)
Q Consensus       183 ~~i~~l~h~~~VtsVafSP-dG~~LAsgS  210 (767)
                      ..+...++.. ...++|+| +|+++++-.
T Consensus       189 ~~i~a~G~rn-p~Gla~d~~~g~l~v~d~  216 (354)
T 3a9g_A          189 SPIWSYGHRN-PQGIDWHRASGVMVATEH  216 (354)
T ss_dssp             CCEEEECCSC-CCEEEECTTTCCEEEEEC
T ss_pred             CcEEEEccCC-cceEEEeCCCCCEEEEec
Confidence            1233333333 45799999 677655543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=88.92  E-value=4.4  Score=43.08  Aligned_cols=102  Identities=13%  Similarity=0.181  Sum_probs=61.4

Q ss_pred             CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEE--Eeec----CCCCeEEEEEcCC---CCEEEEEEC-------C
Q 004217          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI--GSRD----FYRPIASIAFHAS---GELLAVASG-------H  212 (767)
Q Consensus       149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i--~~l~----h~~~VtsVafSPd---G~~LAsgSd-------d  212 (767)
                      -...+.++|.| +++++++ ..++.|++++  +++..  ..+.    .......|+|+|+   +..|.++..       +
T Consensus        30 l~~P~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           30 LEVPWALAFLP-DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             CSCEEEEEECT-TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCCceEEEEcC-CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            34578999999 7786665 5679999998  44422  1111    2356789999998   555554432       4


Q ss_pred             cEEEEEcCCCccccCCeE---Ee---cCCCCeEEEEEccCCCeEEEEE
Q 004217          213 KLYIWRYNMREETSSPRI---VL---RTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       213 ~V~VWDl~t~~~~~~~~~---l~---~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      .|..|+............   +.   ........++|.|||..+++.+
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            588888764321110011   11   1112346899999997555444

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=88.67  E-value=35  Score=39.60  Aligned_cols=166  Identities=13%  Similarity=0.008  Sum_probs=100.6

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC--------CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC----
Q 004217           81 RRGLASWVEAESLHHLRPKYCPLS--------PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH----  148 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t~~L~--------gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH----  148 (767)
                      ...|+.++.+ -|..++..+.++.        -....|.++....+|.+.+ |..+ -+..+|..+++.. .+...    
T Consensus       112 ~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~-~~~~~~~~~  187 (758)
T 3ott_A          112 GDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFE-GIPLPVHSS  187 (758)
T ss_dssp             TTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEE-EECCCCCTT
T ss_pred             CCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceE-EecCCCccc
Confidence            4567777766 5777887655422        1234688998888887665 4444 4777888776643 22211    


Q ss_pred             --CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccc
Q 004217          149 --RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHKLYIWRYNMREET  225 (767)
Q Consensus       149 --~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~  225 (767)
                        ...|.++.... ++..|..|.. +-+..+|..+++...... ....|.++..+.+|.+.+.. +++|.++|..+....
T Consensus       188 ~~~~~i~~i~~d~-~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~~  264 (758)
T 3ott_A          188 QSNLFVNSLLEDT-TRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPLQ  264 (758)
T ss_dssp             CSSCCEEEEEEET-TTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCCE
T ss_pred             cccceeEEEEEEC-CCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcEE
Confidence              12477887766 4554333443 468889988765433211 23458888888888766544 678999987665321


Q ss_pred             cCCeE----EecCCCCeEEEEEccCCCeEEEE
Q 004217          226 SSPRI----VLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       226 ~~~~~----l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      .....    ..-....|.++....+|...+.+
T Consensus       265 ~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT  296 (758)
T 3ott_A          265 HIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT  296 (758)
T ss_dssp             EECCCTTCTTSCSCSCEEEEEECTTCCEEEEE
T ss_pred             EEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe
Confidence            10000    00113468999999888865555

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=87.55  E-value=5.9  Score=42.68  Aligned_cols=113  Identities=14%  Similarity=0.170  Sum_probs=68.3

Q ss_pred             EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe--e-----cCCCCeEEEEEcCC---CCEEEEE--
Q 004217          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--R-----DFYRPIASIAFHAS---GELLAVA--  209 (767)
Q Consensus       142 l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~--l-----~h~~~VtsVafSPd---G~~LAsg--  209 (767)
                      +..+...-...+.|+|.| ++.++++--..|.|++++..+++....  +     ........|+|+|+   +.+|.+.  
T Consensus        24 ~~~va~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           24 LRTVATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             EEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             eEEeecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence            334444456688999999 888877765589999998766554222  2     12456789999996   3444443  


Q ss_pred             --ECCcEEEEEcCCCc----cccCCeE-Ee----cCCCCeEEEEEccCCCeEEEEEe
Q 004217          210 --SGHKLYIWRYNMRE----ETSSPRI-VL----RTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       210 --Sdd~V~VWDl~t~~----~~~~~~~-l~----~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                        ..++|.-|.+....    .+..... +.    .....-..|.|.|||..+++.+.
T Consensus       103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd  159 (347)
T 3das_A          103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE  159 (347)
T ss_dssp             CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred             cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence              23447777765421    1111111 11    11223467999999986666654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=87.52  E-value=19  Score=36.19  Aligned_cols=127  Identities=13%  Similarity=0.062  Sum_probs=70.4

Q ss_pred             CeEEEEeCCCCC---C------CCCCCCeEEEEECCCCCeEEEEeCC-----CeEEEEECCCCeEEE--EEccCCCCcEE
Q 004217           91 ESLHHLRPKYCP---L------SPPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCLK--VLHGHRRTPWV  154 (767)
Q Consensus        91 gsIrlWd~~t~~---L------~gH~~sVtsVaFSpDG~~LASgs~D-----GtVrVWDl~tg~~l~--~L~gH~~~V~s  154 (767)
                      ..+.+||..+.+   .      ........++.+  ++++++.|+.+     ..+.+||..+.+-..  .+.........
T Consensus        78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  155 (301)
T 2vpj_A           78 SSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGL  155 (301)
T ss_dssp             CCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEE
T ss_pred             ceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceE
Confidence            458888887654   1      111111222333  57777777654     368899998876332  22211112222


Q ss_pred             EEEccCCCcEEEEEeCC-----CeEEEEECCCCeEEEee--cCCCCeEEEEEcCCCCEEEEEEC------CcEEEEEcCC
Q 004217          155 VRFHPLNPTIIASGSLD-----HEVRLWNASTAECIGSR--DFYRPIASIAFHASGELLAVASG------HKLYIWRYNM  221 (767)
Q Consensus       155 LafsP~dg~lLaSgS~D-----GtVrIWDl~tg~~i~~l--~h~~~VtsVafSPdG~~LAsgSd------d~V~VWDl~t  221 (767)
                      +.+   ++++++.|+.+     ..+.+||+.+.+....-  .....-.+++. -++++++.|+.      +.+.+||+.+
T Consensus       156 ~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~  231 (301)
T 2vpj_A          156 VVA---SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRT  231 (301)
T ss_dssp             EEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             EEE---CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCC
Confidence            223   56788887765     46899999887665442  22111112222 25666677662      2399999887


Q ss_pred             Cc
Q 004217          222 RE  223 (767)
Q Consensus       222 ~~  223 (767)
                      .+
T Consensus       232 ~~  233 (301)
T 2vpj_A          232 DS  233 (301)
T ss_dssp             TE
T ss_pred             Cc
Confidence            64

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=86.90  E-value=4.3  Score=41.55  Aligned_cols=129  Identities=15%  Similarity=0.117  Sum_probs=75.1

Q ss_pred             CCeEEEEeCCCeEEEEECCCCe------EEEEEccC--CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC
Q 004217          119 GKTLASTHGDHTVKIIDCQTGS------CLKVLHGH--RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF  190 (767)
Q Consensus       119 G~~LASgs~DGtVrVWDl~tg~------~l~~L~gH--~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h  190 (767)
                      ...|+....| +|++=...++.      ...++ ++  =..+..++|+| ++.+.+.  .+|.+.-.+..+.+...-+..
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s   78 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGR   78 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCccccccc
Confidence            3456666666 66554443332      11222 22  24678999999 8887776  677766666654222111111


Q ss_pred             CCC--------eEEEEEcCCCCEEEEEECCcEEEEEcCCCcccc---CCeEEec-CCCCeEEEEEccCCCeEEEE
Q 004217          191 YRP--------IASIAFHASGELLAVASGHKLYIWRYNMREETS---SPRIVLR-TRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       191 ~~~--------VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~---~~~~l~~-h~~~VtsVaFSPDG~~LlaS  253 (767)
                      ...        ..++.|+|+|.+.++ +++.|+-++-.+.....   ....+.. .=..+..|.|.|+|...+++
T Consensus        79 ~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A           79 AKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             CEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             ccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            111        468999999998888 77778877754322111   0011111 11467999999999966555

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=85.84  E-value=8.8  Score=42.59  Aligned_cols=106  Identities=10%  Similarity=0.133  Sum_probs=62.8

Q ss_pred             CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe--ec-------CCCCeEEEEEcCC---CCEEEEEE-C----
Q 004217          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RD-------FYRPIASIAFHAS---GELLAVAS-G----  211 (767)
Q Consensus       149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~--l~-------h~~~VtsVafSPd---G~~LAsgS-d----  211 (767)
                      -...+.|+|.| +++++++-...+.|++++..+++....  +.       .......|+|+|+   +.+|.++. .    
T Consensus        26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            44678999999 888777754445799888765554322  21       2345679999995   55444443 1    


Q ss_pred             ---------CcEEEEEcCCCc-cccCCe-EE---e-cCCCCeEEEEEccCCCeEEEEEe
Q 004217          212 ---------HKLYIWRYNMRE-ETSSPR-IV---L-RTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       212 ---------d~V~VWDl~t~~-~~~~~~-~l---~-~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                               ..|.-|++.... .+.... .+   . ........|+|.|||..+++.+.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                     236666654321 110001 11   1 11234789999999986666554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=85.54  E-value=17  Score=38.60  Aligned_cols=137  Identities=12%  Similarity=0.044  Sum_probs=76.0

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC--C-CC-------CCCCCeEEEEECCC---CCeEEEEe-C-------CCe
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC--P-LS-------PPPRSTIAAAFSPD---GKTLASTH-G-------DHT  130 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~--~-L~-------gH~~sVtsVaFSpD---G~~LASgs-~-------DGt  130 (767)
                      +..+++..+++.|+.....+.|++++....  + +.       ........|+|+||   +.+|..+. .       ...
T Consensus        20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~   99 (353)
T 2g8s_A           20 PWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTA   99 (353)
T ss_dssp             EEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEE
T ss_pred             cEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeE
Confidence            556777677763445556788988875432  1 11       12346789999996   55554443 2       235


Q ss_pred             EEEEECCCC--e--EEE-EEccC------CCCcEEEEEccCCCcEEEEEeC-------------CCeEEEEECCCC----
Q 004217          131 VKIIDCQTG--S--CLK-VLHGH------RRTPWVVRFHPLNPTIIASGSL-------------DHEVRLWNASTA----  182 (767)
Q Consensus       131 VrVWDl~tg--~--~l~-~L~gH------~~~V~sLafsP~dg~lLaSgS~-------------DGtVrIWDl~tg----  182 (767)
                      |..|++..+  +  ... .+.+-      ......|.|.| ++.++++.+.             .+.|.-+|....    
T Consensus       100 v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~  178 (353)
T 2g8s_A          100 VGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDD  178 (353)
T ss_dssp             EEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTT
T ss_pred             EEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCC
Confidence            666666533  1  112 12211      11235799999 7777777543             246666666432    


Q ss_pred             ----------eEEEeecCCCCeEEEEEcC-CCCEEEEEE
Q 004217          183 ----------ECIGSRDFYRPIASIAFHA-SGELLAVAS  210 (767)
Q Consensus       183 ----------~~i~~l~h~~~VtsVafSP-dG~~LAsgS  210 (767)
                                ..+...++ .....++|+| +|+++++-.
T Consensus       179 npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~  216 (353)
T 2g8s_A          179 NPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEH  216 (353)
T ss_dssp             CTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEE
T ss_pred             CCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEec
Confidence                      11222223 3357899999 566555443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=85.17  E-value=28  Score=35.15  Aligned_cols=128  Identities=12%  Similarity=0.062  Sum_probs=72.0

Q ss_pred             CCeEEEEeCCCCC---C---CCCCCCeEEEEECCCCCeEEEEeCC----CeEEEEECCCCeEEEEE--ccCCCCcEEEEE
Q 004217           90 AESLHHLRPKYCP---L---SPPPRSTIAAAFSPDGKTLASTHGD----HTVKIIDCQTGSCLKVL--HGHRRTPWVVRF  157 (767)
Q Consensus        90 DgsIrlWd~~t~~---L---~gH~~sVtsVaFSpDG~~LASgs~D----GtVrVWDl~tg~~l~~L--~gH~~~V~sLaf  157 (767)
                      ...+..||..+.+   +   ........++.+  ++++++.|+.+    ..+.+||..+++-...-  .........+.+
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~  100 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA  100 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE
T ss_pred             CceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE
Confidence            4568888887652   1   111112223332  66777787755    67899999887643222  111112222333


Q ss_pred             ccCCCcEEEEEeCC------CeEEEEECCCCeEEEee--cCCCCeEEEEEcCCCCEEEEEE----------CCcEEEEEc
Q 004217          158 HPLNPTIIASGSLD------HEVRLWNASTAECIGSR--DFYRPIASIAFHASGELLAVAS----------GHKLYIWRY  219 (767)
Q Consensus       158 sP~dg~lLaSgS~D------GtVrIWDl~tg~~i~~l--~h~~~VtsVafSPdG~~LAsgS----------dd~V~VWDl  219 (767)
                         ++.+++.|+.+      ..+.+||..+.+....-  .....-.+++. -++++++.|+          .+.+.+||.
T Consensus       101 ---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~  176 (306)
T 3ii7_A          101 ---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDP  176 (306)
T ss_dssp             ---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEET
T ss_pred             ---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCC
Confidence               56788888765      56899999987755442  21111122222 2566666665          223899998


Q ss_pred             CCCc
Q 004217          220 NMRE  223 (767)
Q Consensus       220 ~t~~  223 (767)
                      .+.+
T Consensus       177 ~~~~  180 (306)
T 3ii7_A          177 ATET  180 (306)
T ss_dssp             TTTE
T ss_pred             CCCe
Confidence            8764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=84.47  E-value=18  Score=36.58  Aligned_cols=126  Identities=18%  Similarity=0.176  Sum_probs=68.1

Q ss_pred             eEEEEeCCCCC------CCCCCCCeEEEEECCCCCeEEEEeCC-------CeEEEEECCCCeEEEE--EccCCCCcEEEE
Q 004217           92 SLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD-------HTVKIIDCQTGSCLKV--LHGHRRTPWVVR  156 (767)
Q Consensus        92 sIrlWd~~t~~------L~gH~~sVtsVaFSpDG~~LASgs~D-------GtVrVWDl~tg~~l~~--L~gH~~~V~sLa  156 (767)
                      .+.+||..+.+      +........++.+  ++++++.|+.+       ..+.+||+.+.+-...  +.........+.
T Consensus       125 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  202 (302)
T 2xn4_A          125 SVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV  202 (302)
T ss_dssp             EEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             eEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE
Confidence            47788887652      1111112222233  56777777643       3588999988763322  111111222233


Q ss_pred             EccCCCcEEEEEeCC-----CeEEEEECCCCeEEEeec--CCCCeEEEEEcCCCCEEEEEECC------cEEEEEcCCCc
Q 004217          157 FHPLNPTIIASGSLD-----HEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVASGH------KLYIWRYNMRE  223 (767)
Q Consensus       157 fsP~dg~lLaSgS~D-----GtVrIWDl~tg~~i~~l~--h~~~VtsVafSPdG~~LAsgSdd------~V~VWDl~t~~  223 (767)
                      +   ++.+++.|+.+     ..+.+||+.+.+....-.  ....-..++. -++++++.|+.+      .+.+||..+.+
T Consensus       203 ~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          203 L---NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             E---TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             E---CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            3   56888888764     469999999876554422  1111112222 256666666522      28888887654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=84.45  E-value=19  Score=36.24  Aligned_cols=126  Identities=18%  Similarity=0.198  Sum_probs=69.8

Q ss_pred             CeEEEEeCCCCC------CCCCCCCeEEEEECCCCCeEEEEeCC-----CeEEEEECCCCeEEEE--EccCCCCcEEEEE
Q 004217           91 ESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCLKV--LHGHRRTPWVVRF  157 (767)
Q Consensus        91 gsIrlWd~~t~~------L~gH~~sVtsVaFSpDG~~LASgs~D-----GtVrVWDl~tg~~l~~--L~gH~~~V~sLaf  157 (767)
                      ..+.++|..+.+      +......-.++.+  ++++++.|+.+     ..+.+||+.+.+-...  +.........+.+
T Consensus       128 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~  205 (301)
T 2vpj_A          128 TSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL  205 (301)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred             ceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE
Confidence            458888887652      1111111222233  67777777754     4589999988764322  1111111222333


Q ss_pred             ccCCCcEEEEEeCC-----CeEEEEECCCCeEEEee--cCCC-CeEEEEEcCCCCEEEEEECC------cEEEEEcCCCc
Q 004217          158 HPLNPTIIASGSLD-----HEVRLWNASTAECIGSR--DFYR-PIASIAFHASGELLAVASGH------KLYIWRYNMRE  223 (767)
Q Consensus       158 sP~dg~lLaSgS~D-----GtVrIWDl~tg~~i~~l--~h~~-~VtsVafSPdG~~LAsgSdd------~V~VWDl~t~~  223 (767)
                         ++.+++.|+.+     ..+.+||+.+.+....-  .... ....+.+  ++++++.|+.+      .+.+||..+.+
T Consensus       206 ---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          206 ---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             ---TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             ---CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence               56788888764     46899999987755442  2111 1122222  56666666522      27888887654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=83.53  E-value=22  Score=39.88  Aligned_cols=120  Identities=14%  Similarity=0.165  Sum_probs=84.7

Q ss_pred             CCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEE
Q 004217          128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLA  207 (767)
Q Consensus       128 DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LA  207 (767)
                      +..|-|.|+.++..+..-.   -.-.+.-.+| ..+.++-=. ..++.|+|+.+.+.++.+.....|..-.|-.+ +.|+
T Consensus        47 ~~~vvIiDl~~~~~~~rrp---i~AdsAIMnP-~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~-~~l~  120 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVA  120 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEE---CCCSEEEECS-SSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET-TEEE
T ss_pred             CCeEEEEECCCCCcceecc---cccceeeeCC-CCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC-CeEE
Confidence            3478889998765432211   1112344788 667666654 78999999999999999887788888888644 5777


Q ss_pred             EEECCcEEEEEcCCCccccCCeEEecC----CCCeEEEEEccCCCeEEEEEe
Q 004217          208 VASGHKLYIWRYNMREETSSPRIVLRT----RRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       208 sgSdd~V~VWDl~t~~~~~~~~~l~~h----~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .-++..|+-|++.....  +...+..|    ...|..-..++|.+|++..|-
T Consensus       121 lVT~taVyHWsi~~~s~--P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI  170 (494)
T 1bpo_A          121 LVTDNAVYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI  170 (494)
T ss_dssp             EECSSEEEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEE
T ss_pred             EEcCCeeEEecccCCCC--chhheecchhcccceEEEEEECCCCCeEEEEee
Confidence            77788899999976332  22344444    457888889999999887663

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=82.53  E-value=31  Score=34.73  Aligned_cols=127  Identities=18%  Similarity=0.165  Sum_probs=69.5

Q ss_pred             CeEEEEeCCCCC------CCCCCCCeEEEEECCCCCeEEEEeCCC-----eEEEEECCCCeEEEE--EccCCCCcEEEEE
Q 004217           91 ESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDH-----TVKIIDCQTGSCLKV--LHGHRRTPWVVRF  157 (767)
Q Consensus        91 gsIrlWd~~t~~------L~gH~~sVtsVaFSpDG~~LASgs~DG-----tVrVWDl~tg~~l~~--L~gH~~~V~sLaf  157 (767)
                      ..+.+||..+.+      +........++.+  ++++++.|+.++     .+.+||+.+.+-...  +.........+.+
T Consensus        77 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~  154 (302)
T 2xn4_A           77 RTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV  154 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred             cceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE
Confidence            357888887652      1111112223333  577778887653     588899888763322  1111111222222


Q ss_pred             ccCCCcEEEEEeCC-------CeEEEEECCCCeEEEe--ecCCCCeEEEEEcCCCCEEEEEEC------CcEEEEEcCCC
Q 004217          158 HPLNPTIIASGSLD-------HEVRLWNASTAECIGS--RDFYRPIASIAFHASGELLAVASG------HKLYIWRYNMR  222 (767)
Q Consensus       158 sP~dg~lLaSgS~D-------GtVrIWDl~tg~~i~~--l~h~~~VtsVafSPdG~~LAsgSd------d~V~VWDl~t~  222 (767)
                         ++++++.|+.+       ..+.+||+.+.+....  +.....-.+++. -++++++.|+.      +.+.+||+.+.
T Consensus       155 ---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          155 ---GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             ---TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             ---CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCC
Confidence               56777777643       4588999988765544  222111122222 25677777652      23899998776


Q ss_pred             c
Q 004217          223 E  223 (767)
Q Consensus       223 ~  223 (767)
                      +
T Consensus       231 ~  231 (302)
T 2xn4_A          231 A  231 (302)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=82.40  E-value=20  Score=36.51  Aligned_cols=127  Identities=13%  Similarity=0.106  Sum_probs=69.5

Q ss_pred             CeEEEEeCCCCC------CCCCCCCeEEEEECCCCCeEEEEeCC-----CeEEEEECCCCeEEEE--EccCCCCcEEEEE
Q 004217           91 ESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCLKV--LHGHRRTPWVVRF  157 (767)
Q Consensus        91 gsIrlWd~~t~~------L~gH~~sVtsVaFSpDG~~LASgs~D-----GtVrVWDl~tg~~l~~--L~gH~~~V~sLaf  157 (767)
                      ..+.+||..+.+      +......-.++.+  ++++++.|+.+     ..+.+||+.+.+-...  +.........+.+
T Consensus       137 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  214 (308)
T 1zgk_A          137 NSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL  214 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred             ccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE
Confidence            457888887652      1111122223333  67777777764     4589999987753321  1111112222333


Q ss_pred             ccCCCcEEEEEeCC-----CeEEEEECCCCeEEEeec--CCCCeEEEEEcCCCCEEEEEEC------CcEEEEEcCCCc
Q 004217          158 HPLNPTIIASGSLD-----HEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVASG------HKLYIWRYNMRE  223 (767)
Q Consensus       158 sP~dg~lLaSgS~D-----GtVrIWDl~tg~~i~~l~--h~~~VtsVafSPdG~~LAsgSd------d~V~VWDl~t~~  223 (767)
                         ++.+++.|+.+     ..+.+||+.+.+....-.  ....-.+++. -++++++.|+.      +.+.+||+.+.+
T Consensus       215 ---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          215 ---HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             ---TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             ---CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence               56788888765     569999999876554322  1111122222 25666666652      227888877653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=81.10  E-value=31  Score=35.03  Aligned_cols=127  Identities=15%  Similarity=0.133  Sum_probs=69.9

Q ss_pred             CeEEEEeCCCCC------CCCCCCCeEEEEECCCCCeEEEEeCC-----CeEEEEECCCCeEEEE--EccCCCCcEEEEE
Q 004217           91 ESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCLKV--LHGHRRTPWVVRF  157 (767)
Q Consensus        91 gsIrlWd~~t~~------L~gH~~sVtsVaFSpDG~~LASgs~D-----GtVrVWDl~tg~~l~~--L~gH~~~V~sLaf  157 (767)
                      ..+.++|..+.+      +........++.+  ++++++.|+.+     ..+.+||..+.+-...  +.........+.+
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  167 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL  167 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred             ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence            457888887652      1111122223333  67777777643     3688999988763321  1111112222333


Q ss_pred             ccCCCcEEEEEeCC-----CeEEEEECCCCeEEEee--cCCCCeEEEEEcCCCCEEEEEEC------CcEEEEEcCCCc
Q 004217          158 HPLNPTIIASGSLD-----HEVRLWNASTAECIGSR--DFYRPIASIAFHASGELLAVASG------HKLYIWRYNMRE  223 (767)
Q Consensus       158 sP~dg~lLaSgS~D-----GtVrIWDl~tg~~i~~l--~h~~~VtsVafSPdG~~LAsgSd------d~V~VWDl~t~~  223 (767)
                         ++.+++.|+.+     ..+.+||+.+.+....-  .....-.+++.. ++++++.|+.      +.+.+||+.+.+
T Consensus       168 ---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          168 ---NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             ---TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             ---CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence               56788877764     46899999887655432  111111222222 6667777652      339999988764

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=80.57  E-value=32  Score=35.89  Aligned_cols=144  Identities=8%  Similarity=0.006  Sum_probs=82.5

Q ss_pred             CeEEEEeCCCCCCCC-CCCCeEEEEECCCCCeEEEEe----CCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEE
Q 004217           91 ESLHHLRPKYCPLSP-PPRSTIAAAFSPDGKTLASTH----GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (767)
Q Consensus        91 gsIrlWd~~t~~L~g-H~~sVtsVaFSpDG~~LASgs----~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lL  165 (767)
                      ..|+..++...+... ...  .+..|++++++|+-..    .+..|...+++... ...+..+..    ..|++ +++.|
T Consensus        88 ~~Iy~i~~dg~~~~~l~~~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~-~g~~i  159 (302)
T 3s25_A           88 NSLCRIKRNGHGSTVLDPD--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNT-SDRYF  159 (302)
T ss_dssp             EEEEEEETTSCCCEEEECS--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEE-ETTEE
T ss_pred             CeEEEEeCCCCcceEeecC--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeE-ECCEE
Confidence            356666666542110 011  1337788899988776    34466666776433 444544433    34566 44555


Q ss_pred             EEEe-CCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC---cEEEEEcCCCccccCCeEEecCCCCeEEE
Q 004217          166 ASGS-LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH---KLYIWRYNMREETSSPRIVLRTRRSLRAV  241 (767)
Q Consensus       166 aSgS-~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd---~V~VWDl~t~~~~~~~~~l~~h~~~VtsV  241 (767)
                      +-.+ ...+|..-++..+.....+.  .... ..++|++.+|+-...+   .|..-++.......    +.  ...+  .
T Consensus       160 y~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~----Lt--~~~~--~  228 (302)
T 3s25_A          160 YYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVV----LT--EANI--E  228 (302)
T ss_dssp             EEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEE----CS--CSCE--E
T ss_pred             EEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEE----Ee--CCCc--c
Confidence            5444 36788888887766554443  2222 3466999988877632   37777776654322    22  2233  3


Q ss_pred             EEccCCCeEEEE
Q 004217          242 HFHPHAAPLLLT  253 (767)
Q Consensus       242 aFSPDG~~LlaS  253 (767)
                      .|+|++++|..+
T Consensus       229 ~~~~~g~~Iy~~  240 (302)
T 3s25_A          229 HYNVYGSLIFYQ  240 (302)
T ss_dssp             EEEEETTEEEEE
T ss_pred             eEEECCCEEEEE
Confidence            488899988655

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=80.20  E-value=1.3e+02  Score=37.58  Aligned_cols=103  Identities=14%  Similarity=0.111  Sum_probs=66.0

Q ss_pred             CCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE-ccCCCCcEEEEEccCC-----CcEEEEEeC-CCeEEEEECC
Q 004217          108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLN-----PTIIASGSL-DHEVRLWNAS  180 (767)
Q Consensus       108 ~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L-~gH~~~V~sLafsP~d-----g~lLaSgS~-DGtVrIWDl~  180 (767)
                      ..|...+.+.  .+++.+. ++.+.+++++.++..... ..-...|.|+++.|..     .++++.|.. |++|+|+++.
T Consensus       514 ~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~  590 (1158)
T 3ei3_A          514 KNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP  590 (1158)
T ss_dssp             CCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence            4576666653  4666665 578888888766422111 1234679999997632     478999996 9999999999


Q ss_pred             CCeEEEeec--CCCCeEEEEEcC--CCCEEEEEECCc
Q 004217          181 TAECIGSRD--FYRPIASIAFHA--SGELLAVASGHK  213 (767)
Q Consensus       181 tg~~i~~l~--h~~~VtsVafSP--dG~~LAsgSdd~  213 (767)
                      +.+.+....  ......++.+..  ...+|..|-.++
T Consensus       591 ~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG  627 (1158)
T 3ei3_A          591 SFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDG  627 (1158)
T ss_dssp             TCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTS
T ss_pred             CCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCC
Confidence            877665433  223445554432  234788887766

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=80.14  E-value=45  Score=41.60  Aligned_cols=93  Identities=13%  Similarity=0.143  Sum_probs=58.8

Q ss_pred             eEEEEECCCCeEEEEEccC-CCCcEEEE---EccCCCcEEEEEe----------CCCeEEEEECCCCeEE--EeecCCCC
Q 004217          130 TVKIIDCQTGSCLKVLHGH-RRTPWVVR---FHPLNPTIIASGS----------LDHEVRLWNASTAECI--GSRDFYRP  193 (767)
Q Consensus       130 tVrVWDl~tg~~l~~L~gH-~~~V~sLa---fsP~dg~lLaSgS----------~DGtVrIWDl~tg~~i--~~l~h~~~  193 (767)
                      .|++.|-.+.+.+..+.-. ...+.+++   |......+++.|.          ..|.|.+|++..++..  .....+++
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~  887 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA  887 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence            3677777776666554322 22344444   3332346787775          3478999998755433  33456788


Q ss_pred             eEEEEEcCCCCEEEEEECCcEEEEEcCCCcc
Q 004217          194 IASIAFHASGELLAVASGHKLYIWRYNMREE  224 (767)
Q Consensus       194 VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~  224 (767)
                      |++++-- +| +|++|-+.+|++||+...+.
T Consensus       888 v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~  916 (1158)
T 3ei3_A          888 VYSMVEF-NG-KLLASINSTVRLYEWTTEKE  916 (1158)
T ss_dssp             EEEEEEE-TT-EEEEEETTEEEEEEECTTSC
T ss_pred             CEEEeee-CC-EEEEEcCCEEEEEECCCCce
Confidence            9888733 34 67777788899999986654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	767
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-12
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-11
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-09
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	9e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.003
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.004
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.001
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.002

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.1 bits (188), Expect = 9e-16
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 1/85 (1%)

Query: 94  HHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153
                             + +FS  G+ L + + D    + D        VL GH     
Sbjct: 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316

Query: 154 VVRFHPLNPTIIASGSLDHEVRLWN 178
            +     +   +A+GS D  +++WN
Sbjct: 317 CLGVTD-DGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.6 bits (179), Expect = 1e-14
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 5/110 (4%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV--VRFHPLNPTIIASGS 169
           A  F P+G   A+   D T ++ D +    L           +  V F   +  ++ +G 
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGY 289

Query: 170 LDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIW 217
            D    +W+A  A+  G        ++ +     G  +A  S    L IW
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.6 bits (166), Expect = 6e-13
 Identities = 28/141 (19%), Positives = 43/141 (30%), Gaps = 11/141 (7%)

Query: 119 GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL-- 176
            +   S   D + K+ D + G C +   GH      + F P N    A+GS D   RL  
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFD 254

Query: 177 -WNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRT 234
                        +    I S++F  SG LL          +W        +    VL  
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA----LKADRAGVLAG 310

Query: 235 -RRSLRAVHFHPHAAPLLLTA 254
               +  +         + T 
Sbjct: 311 HDNRVSCLGVTDD-GMAVATG 330

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 12/80 (15%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAF 199
             + L GH    + + +   +  ++ S S D ++ +W++ T   + +       + + A+
Sbjct: 47  TRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 200 HASGELLAVASGHKLYIWRY 219
             SG  +A      +     
Sbjct: 106 APSGNYVACGGLDNICSIYN 125

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 9/53 (16%), Positives = 17/53 (32%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI 164
           A  +  D + L S   D  + I D  T + +  +           + P    +
Sbjct: 60  AMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.7 bits (187), Expect = 1e-15
 Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 3/128 (2%)

Query: 92  SLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT 151
            +                +        G  L S   D T+K+ D  TG CL  L GH   
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249

Query: 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS 210
              V FH      I S + D  +R+W+     C+ +       + S+ FH +   +   S
Sbjct: 250 VRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 308

Query: 211 G-HKLYIW 217
               + +W
Sbjct: 309 VDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (158), Expect = 5e-12
 Identities = 33/176 (18%), Positives = 61/176 (34%), Gaps = 27/176 (15%)

Query: 101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL 160
              +           + DG  +AS   D TV++    T  C   L  HR     + + P 
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196

Query: 161 NP-------------------TIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFH 200
           +                      + SGS D  +++W+ ST  C+ +       +  + FH
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256

Query: 201 ASGELLAVASG-HKLYIWRYNMREETSSPRIVLRT-RRSLRAVHFHPHAAPLLLTA 254
           + G+ +   +    L +W Y    +       L      + ++ FH   AP ++T 
Sbjct: 257 SGGKFILSCADDKTLRVWDY----KNKRCMKTLNAHEHFVTSLDFHKT-APYVVTG 307

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.9 bits (133), Expect = 7e-09
 Identities = 23/158 (14%), Positives = 46/158 (29%), Gaps = 11/158 (6%)

Query: 105 PPPRSTI--------AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR 156
           PP +  +           F P    + S   D T+K+ D +TG   + L GH  +   + 
Sbjct: 7   PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS 66

Query: 157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYI 216
           F      + +  +                        ++S++   +G+ +  AS  K   
Sbjct: 67  FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK--- 123

Query: 217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254
                  +T          R    +        L+ + 
Sbjct: 124 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 161

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 94  HHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153
                    +     +  + +  P+G  + S   D T+K+ + QTG C+K   GHR    
Sbjct: 88  FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 147

Query: 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGH 212
           +VR +  + T+IAS S D  VR+W  +T EC    R+    +  I++       +++   
Sbjct: 148 MVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (163), Expect = 1e-12
 Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 11/139 (7%)

Query: 93  LHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152
           +  +    C  +     ++ +        L S + D TVKI D +TG CL+ L G  +  
Sbjct: 201 VWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ 260

Query: 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECI------GSRDFYRPIASIAFHASGELL 206
             V     N   + + S D  V+LW+  T E I       S      +  I    +  + 
Sbjct: 261 SAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC 320

Query: 207 AVASGH-----KLYIWRYN 220
           AV S +     KL +  ++
Sbjct: 321 AVGSRNGTEETKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 9e-10
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 5/163 (3%)

Query: 85  ASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV 144
            S      +  +    C                DG+ + S   D  VK+ D +T +CL  
Sbjct: 113 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT 172

Query: 145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGE 204
           L GH    + ++F   +   + SGSLD  +R+W+  T  CI +   ++ + S        
Sbjct: 173 LQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMELKDN 228

Query: 205 LLAVA-SGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH 246
           +L    +   + IW     +   + +   + + ++  + F+ +
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN 271

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 7e-09
 Identities = 13/52 (25%), Positives = 20/52 (38%)

Query: 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP 159
              +       G  + S   D+T+K+    TG CL+ L GH    W  +   
Sbjct: 16  DDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 135 DCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRP 193
                   KVL GH                I SGS D+ +++W+A T +C+ +       
Sbjct: 2   RRGELKSPKVLKGHDDHVITC-LQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 194 IASIAFH 200
           + S    
Sbjct: 60  VWSSQMR 66

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 92  SLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-----H 146
            +   +       P    +       +   + ++  D TVK+ D +TG  ++ L      
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 302

Query: 147 GHRRTPWVVRFHPLNPTIIASGSLDH----EVRLWN 178
           G     W +R       + A GS +     ++ + +
Sbjct: 303 GSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLD 337

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.4 bits (160), Expect = 3e-12
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 3/69 (4%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGS--CLKVLHGHRRTPWVVRFHPLNPTIIASGS 169
             A++ D   +A    +H V I +        +  L  H      V + P +   I +  
Sbjct: 12  CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCG 70

Query: 170 LDHEVRLWN 178
            D    +W 
Sbjct: 71  TDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGELLAVASG 211
             ++  + T IA    +HEV ++  S  + +   +       +  + +      +     
Sbjct: 13  HAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT 71

Query: 212 -HKLYIWRYNM 221
               Y+W    
Sbjct: 72  DRNAYVWTLKG 82

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 8/77 (10%), Positives = 22/77 (28%), Gaps = 9/77 (11%)

Query: 116 SPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG------HRRTPWVVRFHP---LNPTIIA 166
            P   +          + +D +  S      G      H+ +   +          +   
Sbjct: 286 VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC 345

Query: 167 SGSLDHEVRLWNASTAE 183
           +  +D  + +W+  + E
Sbjct: 346 TTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 8/124 (6%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
            F  +   +A+ H    V +    + +      G    P       L        +LD +
Sbjct: 250 TFITESSLVAAGHDCFPV-LFTYDSAAGKLSFGGRLDVPKQSSQRGLTA-RERFQNLDKK 307

Query: 174 VRLWNASTAECIGSRDFYRPIASIAFHASGE--LLAVASG---HKLYIWRYNMREETSSP 228
                ++ A           ++ I+  + G+       +      + IW     E     
Sbjct: 308 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKD 367

Query: 229 -RIV 231
            +IV
Sbjct: 368 LKIV 371

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 66.4 bits (161), Expect = 5e-12
 Identities = 35/280 (12%), Positives = 63/280 (22%), Gaps = 28/280 (10%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSC-----LKVLHGHRRTPWVVRFHPLNPTIIASG 168
             S  G+ L     D  V +ID           +K+    R           +   IA  
Sbjct: 68  RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA 127

Query: 169 SLDHEVRLWNASTAECIGSRDFYRPI------------ASIAFHASGELLAVASGHKLYI 216
               +  + +  T E    +                  A+I          V       I
Sbjct: 128 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 187

Query: 217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWR 276
              +  +  +     +   R L             +TA                      
Sbjct: 188 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHR-YFITAANARNKLVVIDTKEGKLVAIED 246

Query: 277 YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSL 336
                       +  HP      P+     +    V         H ++   A +   S 
Sbjct: 247 TGGQTPHPGRGANFVHPTFG---PVWATSHMGDDSVALIGTDPEGHPDN---AWKILDSF 300

Query: 337 RSSSSVRLLTYSTPSGQYELVLSPI----ASNRSSPMPDG 372
            +     L   + P+ QY  V + +      + S  + D 
Sbjct: 301 PALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI 340

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 15/132 (11%), Positives = 30/132 (22%), Gaps = 15/132 (11%)

Query: 102 PLSPPPRSTIAAAFSPDGKTL--ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP 159
                P   +      D + L   +      + +ID  T     VL        + R   
Sbjct: 16  APEDRPTQQM---NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSA 71

Query: 160 LNPTIIASGSLDHEVRLWNASTAECIGSRDF------YRPIASIAFHASGELLAVAS--G 211
            +   +     D +V + +    E     +            S       +     +   
Sbjct: 72  -SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP 130

Query: 212 HKLYIWRYNMRE 223
            +  I      E
Sbjct: 131 PQYVIMDGETLE 142

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (159), Expect = 6e-12
 Identities = 31/174 (17%), Positives = 52/174 (29%), Gaps = 21/174 (12%)

Query: 66  CSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLAST 125
             G    I     D    +        +  L  +    +    S  +  F+ DG+++ S 
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272

Query: 126 HGDHTVKIIDCQTGSCLKVLHGHRRTPWV------------VRFHPLNPTIIASGSLDHE 173
             D +VK+ + Q  +                          V     N   I SGS D  
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRG 331

Query: 174 VRLWNASTAECIGS-RDFYRPIASIA------FHASGELLAVASG-HKLYIWRY 219
           V  W+  +   +   +     + S+A            + A  SG  K  IW+Y
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 17/139 (12%), Positives = 36/139 (25%), Gaps = 8/139 (5%)

Query: 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNAST-----AECIGSRDFYRPIASIAFHASGEL 205
            P+++     +         +    L+N +       E   S D    +  + F   GE 
Sbjct: 17  PPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEY 76

Query: 206 LAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESS 265
           LA        ++R +     +         +    ++     +       +  +  S   
Sbjct: 77  LATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS---DLYIRSVCFSPDG 133

Query: 266 LTLATSPGYWRYPPPVICM 284
             LAT           I  
Sbjct: 134 KFLATGAEDRLIRIWDIEN 152

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 6e-04
 Identities = 22/110 (20%), Positives = 34/110 (30%), Gaps = 25/110 (22%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD 171
              FS DG+ LA+   + T ++     GS +  L             P N    +S S D
Sbjct: 67  CVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDD----SAANKDPENLNTSSSPSSD 121

Query: 172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNM 221
             +R                    S+ F   G+ LA  +  +L       
Sbjct: 122 LYIR--------------------SVCFSPDGKFLATGAEDRLIRIWDIE 151

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 9/96 (9%)

Query: 126 HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185
            GD TV+I D +TG C             V   P +   IA+GSLD  VR+W++ T   +
Sbjct: 182 SGDRTVRIWDLRTGQCSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240

Query: 186 GSRDFYR--------PIASIAFHASGELLAVASGHK 213
              D            + S+ F   G+ +   S  +
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 276

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 7e-12
 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD 171
           +  F+  GK   ST  D+ +       G+ +        +         +   I +GS D
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIVTGSGD 327

Query: 172 HEVRLWN 178
            +  ++ 
Sbjct: 328 KKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 14/105 (13%), Positives = 29/105 (27%), Gaps = 3/105 (2%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
            + P G+   +   + +   +          LH H      ++F         S   D+ 
Sbjct: 231 GYCPTGEW-LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNL 288

Query: 174 VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIW 217
           +  W       I        + S       + +   SG  K  ++
Sbjct: 289 LNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 10/95 (10%), Positives = 24/95 (25%), Gaps = 7/95 (7%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-----HGHRRTPWVVRFHPLNPTIIA 166
           A   S   + + +  G   VK+ D         +               +  P +   + 
Sbjct: 56  AVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLI 113

Query: 167 SGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHA 201
            G     + +W+ +        +      +    A
Sbjct: 114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 62.8 bits (151), Expect = 4e-11
 Identities = 15/141 (10%), Positives = 39/141 (27%), Gaps = 8/141 (5%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDH 172
           A     + +  T+  + + ++D  + +  K      +  P      P N T     +   
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62

Query: 173 EVRLWNASTAECIGSRDF-------YRPIASIAFHASGELLAVASGHKLYIWRYNMREET 225
           ++   +  T +     +         R + S A    G+ +         +  + + +  
Sbjct: 63  DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 122

Query: 226 SSPRIVLRTRRSLRAVHFHPH 246
                        + V   P 
Sbjct: 123 RLEVFSTADGLEAKPVRTFPM 143

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 52.4 bits (124), Expect = 8e-08
 Identities = 14/117 (11%), Positives = 38/117 (32%), Gaps = 2/117 (1%)

Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
           F  D +  A+    +    +D +TG             +              G   + +
Sbjct: 216 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRL 274

Query: 175 RLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRI 230
             ++    + I + +       +AF   G+ L +    + L ++  +  E+  + ++
Sbjct: 275 AKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.5 bits (106), Expect = 2e-05
 Identities = 20/201 (9%), Positives = 49/201 (24%), Gaps = 18/201 (8%)

Query: 105 PPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLH------GHRRTPWVVRF 157
           P       A  +PD +T     +    +  ID  T       +         R+ +    
Sbjct: 37  PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI 96

Query: 158 HPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-----YRPIASIAFHASGELLAVASGH 212
            P    + A+ +    +          +           +P+ +        L+  A   
Sbjct: 97  SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 156

Query: 213 KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSP 272
            LY+   ++       ++ ++T +   A+             +V      +S     +  
Sbjct: 157 SLYVAGPDIY------KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 210

Query: 273 GYWRYPPPVICMAGAHSSSHP 293
                              + 
Sbjct: 211 YTIARFKDDKQDPATADLLYG 231

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 6/41 (14%), Positives = 13/41 (31%)

Query: 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL 145
               +    AF   G  L      + + + +  T   +K +
Sbjct: 289 NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 329

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 60.3 bits (144), Expect = 2e-10
 Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 2/94 (2%)

Query: 86  SWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL 145
           + V+                   S     +SPDG  +AS   D T+KI +  T    K +
Sbjct: 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 276

Query: 146 HGHRRTP-WVVRFHPLNPTIIASGSLDHEVRLWN 178
               R     +         + S S +  +   N
Sbjct: 277 PVGTRIEDQQLGIIW-TKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 59.5 bits (142), Expect = 4e-10
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 111 IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL 170
           +    +P G  +   +G  +V  +   + +  ++   H     V +  P +    ASG +
Sbjct: 21  VVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDV 78

Query: 171 DHEVRLWN 178
              VR+W+
Sbjct: 79  HGNVRIWD 86

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 7e-05
 Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 3/85 (3%)

Query: 136 CQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIA 195
                   + +              + T IAS S D  +++WN +T +   +      I 
Sbjct: 224 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE 283

Query: 196 S--IAFHASGELLAVASGHK-LYIW 217
              +    + + L   S +  +   
Sbjct: 284 DQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 59.6 bits (142), Expect = 3e-10
 Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 3/110 (2%)

Query: 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG--SRDFYRPIAS 196
           GS  +V +GH +    +     +   + S   +  +  W+ ST              I  
Sbjct: 2   GSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60

Query: 197 IAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH 246
           I   + G+L  V+    L +         SS  +  +       +     
Sbjct: 61  IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD 110

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.8 bits (119), Expect = 3e-07
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLNPTIIASGSL 170
           A + S DGKTL S   +  +   D  TG   +V    H      ++    +   + + S 
Sbjct: 17  ALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT--SKGDLFTVSW 74

Query: 171 DHEVRLWNASTAEC 184
           D  +++  A  +  
Sbjct: 75  DDHLKVVPAGGSGV 88

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.5 bits (108), Expect = 5e-06
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 87  WVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL- 145
              + + +         +         ++SPD   LA+   D++V + +    S   ++ 
Sbjct: 204 IPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII 263

Query: 146 -HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178
              H  +         N T I S   D  ++ WN
Sbjct: 264 KGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 11/99 (11%), Positives = 25/99 (25%), Gaps = 4/99 (4%)

Query: 124 STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE 183
                     +                          +   +A+GSLD+ V +WN +   
Sbjct: 198 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 257

Query: 184 C----IGSRDFYRPIASIAFHASGELLAVASGHKLYIWR 218
                I        + S+ +     +++      +  W 
Sbjct: 258 DHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (143), Expect = 4e-10
 Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 4/86 (4%)

Query: 103 LSPPPRSTIAA-AFSPDGKTLASTHGDHTVKIIDCQTGSC---LKVLHGHRRTPWVVRFH 158
           +   P+  I+     P    L  T  D ++ +      +    L     ++       F 
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65

Query: 159 PLNPTIIASGSLDHEVRLWNASTAEC 184
                 I  G++  E+   +   +  
Sbjct: 66  DNTDLQIYVGTVQGEILKVDLIGSPS 91

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 17/161 (10%), Positives = 38/161 (23%), Gaps = 18/161 (11%)

Query: 87  WVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL- 145
           W                    +    A    + +  A +  D  V +             
Sbjct: 174 WFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233

Query: 146 --------------HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY 191
                                  + F P     + +   D  +  WN  T + I +   +
Sbjct: 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292

Query: 192 RPIASIAFHASGELLAVASGHKLYI--WRYNMREETSSPRI 230
              + +    S  +L +A+    +      +   E ++  I
Sbjct: 293 NEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSI 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 3e-08
 Identities = 8/86 (9%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST----AECIGSRDFYRPIAS 196
            +++    +     ++  P + +++   S D  + ++         + + S  +  P+  
Sbjct: 3   IVQIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 197 IAFHASGELLAVASGHKLYIWRYNMR 222
             F  + +L       +  I + ++ 
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLI 87

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 194 IASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252
           I+ I    S  LL + S    L +++++++ +       LR +  L   +F  +    + 
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73

Query: 253 TA 254
             
Sbjct: 74  VG 75

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.4 bits (139), Expect = 1e-09
 Identities = 17/148 (11%), Positives = 36/148 (24%), Gaps = 7/148 (4%)

Query: 106 PPRST-------IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFH 158
           P R+T       +      +   + +   D  +++ D      L  L GH    W +++ 
Sbjct: 3   PQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62

Query: 159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWR 218
                +  S      V          +                      V       +  
Sbjct: 63  HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122

Query: 219 YNMREETSSPRIVLRTRRSLRAVHFHPH 246
           + + +E+S P         L       +
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTPEEN 150

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.1 bits (133), Expect = 7e-09
 Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 4/93 (4%)

Query: 86  SWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV- 144
           +                       +    F      L S   ++   I + ++G  +   
Sbjct: 261 ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHAN 319

Query: 145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLW 177
           +       W V F     T++A+   D +  L 
Sbjct: 320 ILKDADQIWSVNFKG--KTLVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 9e-07
 Identities = 12/97 (12%), Positives = 32/97 (32%), Gaps = 3/97 (3%)

Query: 126 HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185
                  I         +    H      +    ++  I+ SGS +++  ++N  + + +
Sbjct: 258 SAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV 316

Query: 186 GS--RDFYRPIASIAFHASGELLAVASGHKLYIWRYN 220
            +        I S+ F     + AV    + ++   +
Sbjct: 317 HANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD 353

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 2e-09
 Identities = 26/144 (18%), Positives = 57/144 (39%), Gaps = 12/144 (8%)

Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
            D K + S  GD T+K+ +  T   ++ L+GH      +        ++ SGS D+ +RL
Sbjct: 146 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH---KRGIACLQYRDRLVVSGSSDNTIRL 202

Query: 177 WNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRR 236
           W+     C+   + +  +       +  +++ A   K+ +W      +  +P   L  R 
Sbjct: 203 WDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT 262

Query: 237 ------SLRAVHFHPHAAPLLLTA 254
                  +  + F       ++++
Sbjct: 263 LVEHSGRVFRLQFDEF---QIVSS 283

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 9e-09
 Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 12/112 (10%)

Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
                + + S   D+T+++ D + G+CL+VL GH     +VR    +   I SG+ D ++
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH---EELVRCIRFDNKRIVSGAYDGKI 240

Query: 175 RLWNASTAECIGSRDFYRPIASIAFHA--------SGELLAVASG-HKLYIW 217
           ++W+   A    +      + ++  H+            +  +S    + IW
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 8e-08
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 12/95 (12%)

Query: 93  LHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG---------SCLK 143
           L  +    C         +      D K + S   D  +K+ D              CL+
Sbjct: 202 LWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR 261

Query: 144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178
            L  H    + ++F       I S S D  + +W+
Sbjct: 262 TLVEHSGRVFRLQFDE---FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 4e-07
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP 159
               D + + S   D+T+KI D  T  C ++L GH  +   +++  
Sbjct: 20  CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 11/61 (18%)

Query: 127 GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG 186
           G H+++ I C++           +  + +++   +   I SG  D+ +++W+ +T EC  
Sbjct: 1   GRHSLQRIHCRSE--------TSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKR 49

Query: 187 S 187
            
Sbjct: 50  I 50

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 2e-09
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVL--HGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
            D +  A+   D T+++ D  T  C++       +     V         I S SLD  +
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 320

Query: 175 RLWN 178
             + 
Sbjct: 321 NFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 4e-08
 Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 18/169 (10%)

Query: 103 LSPPPRST----IAAAFSPDGKTLASTHGDHT-VKIIDCQTGS--CLKVLHGHRRTP-WV 154
           + P P +        ++ P    +A   G    V+ +D        +    GH  +    
Sbjct: 9   IPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTT 68

Query: 155 VRFHPL-NPTIIASGSLDHEVRLWNASTAECIGSRDFYR---------PIASIAFHASGE 204
           V+F P+     + SG    +V +W  +  +   S +            PI+ I++   G 
Sbjct: 69  VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR 128

Query: 205 LLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253
            L V    +     +   +  +S   V    + + A H         +T
Sbjct: 129 RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT 177

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 9/77 (11%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI-----GSRDFYRPIASIAFH 200
                   +     L+    A+   D  +R+W+ +T++C+       +        +   
Sbjct: 247 DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT 306

Query: 201 ASGELLAVASGHKLYIW 217
            +G +++++    L  +
Sbjct: 307 GNGRIISLSLDGTLNFY 323

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 57.3 bits (137), Expect = 3e-09
 Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 6/118 (5%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-----HGHRRTPWVVRFHPLNPTIIA 166
            +  S  G+ L     D  + +ID       KV         R           +   IA
Sbjct: 66  ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIA 125

Query: 167 SGSLDHEVRLWNASTAECIGSRDF-YRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223
                 +  + +  T E           + +  +H    + A+ + H+   +  N++E
Sbjct: 126 GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 50.7 bits (120), Expect = 4e-07
 Identities = 13/127 (10%), Positives = 29/127 (22%), Gaps = 10/127 (7%)

Query: 103 LSPPPRSTIAAAFSPDGKTLA--STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL 160
           L  P           D   L   +      + ++D  +   +KV+        + R    
Sbjct: 14  LVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSA- 71

Query: 161 NPTIIASGSLDHEVRLWNASTAEC-----IGSRDFYRPIA-SIAFHASGELLAVASGHKL 214
           +   +     D  + + +    E      I      R +  S             +    
Sbjct: 72  SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPP 131

Query: 215 YIWRYNM 221
                + 
Sbjct: 132 QFAIMDG 138

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.1 bits (95), Expect = 4e-04
 Identities = 26/202 (12%), Positives = 57/202 (28%), Gaps = 18/202 (8%)

Query: 73  IFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLAST-HGDHTV 131
           +   GRDAR  +      E       K            +     + +   +  +     
Sbjct: 76  LLVIGRDARIDMIDLWAKEPTKVAEIKIG--IEARSVESSKFKGYEDRYTIAGAYWPPQF 133

Query: 132 KIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI------ 185
            I+D +T    +++     T     +HP         S +H   + N      +      
Sbjct: 134 AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 193

Query: 186 -------GSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE--ETSSPRIVLRTRR 236
                   S      +A   + +S      A+ +   +   + ++   ++   +      
Sbjct: 194 DIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP 253

Query: 237 SLRAVHFHPHAAPLLLTAEVND 258
              A   HP   P+  T+ + D
Sbjct: 254 GRGANFVHPKYGPVWSTSHLGD 275

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.9 bits (92), Expect = 9e-04
 Identities = 21/148 (14%), Positives = 43/148 (29%), Gaps = 17/148 (11%)

Query: 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI 164
           P      + +   DG                      +  L G       ++ HP +  +
Sbjct: 262 PKYGPVWSTSHLGDGSISLIGTDPKNHPQ---YAWKKVAELQGQGGGSLFIKTHPKSSHL 318

Query: 165 IA------SGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAV-----ASGHK 213
                      +   V +++    +         PIA  A    G    V       G +
Sbjct: 319 YVDTTFNPDARISQSVAVFDLKNLDAKYQV---LPIAEWADLGEGAKRVVQPEYNKRGDE 375

Query: 214 LYIWRYNMREETSSPRIVLRTRRSLRAV 241
           ++   +N + ++S+  +V      L+AV
Sbjct: 376 VWFSVWNGKNDSSALVVVDDKTLKLKAV 403

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.0 bits (87), Expect = 0.003
 Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 3/87 (3%)

Query: 164 IIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMR 222
              +     ++ L +  + + +   D    +      ASG  L V     ++ +     +
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAK 93

Query: 223 EETSSPRIVLRTRRSLRAVHFHPHAAP 249
           E T    I  +     R+V        
Sbjct: 94  EPTKVAEI--KIGIEARSVESSKFKGY 118

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.7 bits (127), Expect = 4e-08
 Identities = 11/119 (9%), Positives = 26/119 (21%), Gaps = 5/119 (4%)

Query: 111 IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-LHGHRRTPWVVRFHPLNPTIIASGS 169
                  D      T     +  +D +TG      +       +    +P          
Sbjct: 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA---FG 257

Query: 170 LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSS 227
             + +  ++      I          S+     G  + +      L  +     E+   
Sbjct: 258 AYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 8/107 (7%)

Query: 122 LASTHGDHTVKIIDCQTGSCLKVL--HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA 179
           + +      + +ID +  +  KV+       TP V    P      A+ +    +   + 
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 180 STAECIGSRDFYRP------IASIAFHASGELLAVASGHKLYIWRYN 220
            T E +G  D   P      +   A    G+ LA+          + 
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF 110

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 20/147 (13%), Positives = 41/147 (27%), Gaps = 17/147 (11%)

Query: 99  KYCPLSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF 157
           K   ++    + +    +P G+   A+ +   ++  ID  TG  L  +        V   
Sbjct: 25  KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSL 84

Query: 158 HPL----NPTIIASGSLDHEVRL------------WNASTAECIGSRDFYRPIASIAFHA 201
                  +   +A       + L            ++A T     + +  R I  +A+  
Sbjct: 85  FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR 144

Query: 202 SGELLAVASGHKLYIWRYNMREETSSP 228
            G  L         +           P
Sbjct: 145 DGSKLYGLGRDLHVMDPEAGTLVEDKP 171

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 4/50 (8%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL----HGHRRTPWVVRF 157
           +   S DG T+        +   D +T      +    +       V  F
Sbjct: 284 SVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLF 333

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 4e-08
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 94  HHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-GSCLKVLHGHRRTP 152
                K   +S  P    A     +   +A+   D  + I   +     +K L+ H+   
Sbjct: 202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV 261

Query: 153 WVVRFHPLNPTIIASGSLDHEVRLWN 178
             + +    P+ + S   D  ++ WN
Sbjct: 262 NNLLWET--PSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 5e-08
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 9/106 (8%)

Query: 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH 200
            LK + GH +    +  +PL      SGS D  +  W++S+      +D    I S+   
Sbjct: 5   VLKTISGHNKGITALTVNPL-----ISGSYDGRIMEWSSSS----MHQDHSNLIVSLDNS 55

Query: 201 ASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH 246
            + E  +++    L +      E  S P++         AV  +  
Sbjct: 56  KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDD 101

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 10/93 (10%), Positives = 33/93 (35%), Gaps = 2/93 (2%)

Query: 128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIG 186
              VK       +        +          +   ++A+GSLD  + +++     + I 
Sbjct: 193 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 252

Query: 187 SRDFYR-PIASIAFHASGELLAVASGHKLYIWR 218
           + + ++  + ++ +     L++  +   +  W 
Sbjct: 253 ALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 51.8 bits (122), Expect = 2e-07
 Identities = 13/126 (10%), Positives = 30/126 (23%), Gaps = 7/126 (5%)

Query: 71  SQIFEAGRDARRGLASWVEAESLHHLRPK-YCPLSPPPRSTIAAAFSPDGKTLASTHGDH 129
           S   EAG      +       ++     +   PL                          
Sbjct: 239 SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKG 298

Query: 130 TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD 189
            +   D +T      +   +     +R    +   +     D ++  +     E   + +
Sbjct: 299 VLLKYDVKTRK----VTEVKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPLEKPEDERTVE 353

Query: 190 F-YRPI 194
              RP+
Sbjct: 354 TDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 109 STIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIAS 167
           S  A  FSP DG  +A         I D      LKV    R     VR           
Sbjct: 4   SKFAEDFSPLDGDLIAFV-SRGQAFIQDVSGTYVLKVPEPLR--IRYVRRGGDTKVAFIH 60

Query: 168 GSLDHE-VRLWNASTAECIGSRDFYRPIASIAFH 200
           G+ + + + +++  T +     +    + ++   
Sbjct: 61  GTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVD 94

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 6e-07
 Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 12/84 (14%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSC------------LKVLHGHRRTPWVVRFHPLN 161
           + S       S  GD  +K+ D +                 K    H      +      
Sbjct: 19  SVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE 78

Query: 162 PTIIASGSLDHEVRLWNASTAECI 185
             ++A+ S   ++  +  +  +  
Sbjct: 79  LCLVATTSFSGDLLFYRITREDET 102

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 4e-05
 Identities = 19/141 (13%), Positives = 42/141 (29%), Gaps = 8/141 (5%)

Query: 64  RKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTI-AAAFSPDGKTL 122
                  S  F             + + S+     +         S + + +F+  G+TL
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 304

Query: 123 ASTHGDHTVKIIDCQTGSCLKVLHGH----RRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178
            S   D  ++  D +T   +  L+ H         ++       ++   G  D  V+   
Sbjct: 305 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD--VKFLK 362

Query: 179 ASTAECIGSRDFYRPIASIAF 199
                 +G+ D    +  +  
Sbjct: 363 KGWRSGMGA-DLNESLCCVCL 382

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.4 bits (116), Expect = 9e-07
 Identities = 11/87 (12%), Positives = 24/87 (27%), Gaps = 2/87 (2%)

Query: 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL- 160
            ++                          V ++D +TG  L            +      
Sbjct: 253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-IDSINVSQDE 311

Query: 161 NPTIIASGSLDHEVRLWNASTAECIGS 187
            P + A  + D  + + +A + E + S
Sbjct: 312 KPLLYALSTGDKTLYIHDAESGEELRS 338

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (114), Expect = 2e-06
 Identities = 20/154 (12%), Positives = 41/154 (26%), Gaps = 16/154 (10%)

Query: 110 TIAAAFSPDGKTL-----ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI 164
            I  A +PD + +     A         +ID + G  + ++ G                I
Sbjct: 4   RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFI 61

Query: 165 ---------IASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLY 215
                    IA G     V +++  T       +       +             G  L 
Sbjct: 62  AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLL 121

Query: 216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAP 249
            ++++         +  +  + +  V    H  P
Sbjct: 122 FYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFP 155

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 105 PPPRSTIAAAFSPDGKTL--ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP 159
                  +   S D K L  A + GD T+ I D ++G  L+ ++     P V+    
Sbjct: 297 EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 353

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.4 bits (103), Expect = 3e-05
 Identities = 19/148 (12%), Positives = 33/148 (22%), Gaps = 26/148 (17%)

Query: 114 AFSPDGKTLAST----------HGDHTVKIIDCQTGSCLKVLHGHRRT-------PWVVR 156
             + DG  +A                 V++ D  T      +             PW+  
Sbjct: 53  VVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS 112

Query: 157 FHPLNPTII-ASGSLDHEVRLWNASTAECIGSRD--------FYRPIASIAFHASGELLA 207
             P   T++    S    V + +          D           P         G L  
Sbjct: 113 LTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAK 172

Query: 208 VASGHKLYIWRYNMREETSSPRIVLRTR 235
           VA G +      +          ++   
Sbjct: 173 VAFGTEGTPEITHTEVFHPEDEFLINHP 200

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 21/130 (16%), Positives = 33/130 (25%), Gaps = 24/130 (18%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVLHGHRRTPWVVRFHPLNPTIIA--- 166
             A+S     L        +  ID  +G    L  +           + P     +A   
Sbjct: 199 HPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR 258

Query: 167 ----------------SGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS 210
                             +    V + +A T E +   +    I SI      + L  A 
Sbjct: 259 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYAL 318

Query: 211 G---HKLYIW 217
                 LYI 
Sbjct: 319 STGDKTLYIH 328

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 6/58 (10%), Positives = 18/58 (31%), Gaps = 1/58 (1%)

Query: 127 GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC 184
               + +ID  +      +      P      P    +  + +  ++V + + +T   
Sbjct: 10  ESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 11/94 (11%), Positives = 24/94 (25%), Gaps = 1/94 (1%)

Query: 94  HHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153
            +       +   P                     +TV +ID  T      +      P 
Sbjct: 189 TNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PA 247

Query: 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS 187
            +   P    +  + S  + V + + +T     +
Sbjct: 248 GIAVTPDGKKVYVALSFCNTVSVIDTATNTITAT 281

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 112 AAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVL 145
             A +PDGK +  +    +TV +ID  T +    +
Sbjct: 248 GIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 2/109 (1%)

Query: 114 AFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
             SPDG  +  +    + V IID  T   +        +P  V   P    +  +     
Sbjct: 38  VISPDGTKVYVANAHSNDVSIIDTATN-NVIATVPAGSSPQGVAVSPDGKQVYVTNMASS 96

Query: 173 EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNM 221
            + + + ++    G+    +    +A    G+ L V +     +   N 
Sbjct: 97  TLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINT 145

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 7/104 (6%), Positives = 27/104 (25%), Gaps = 6/104 (5%)

Query: 124 STHGDHTVKIIDCQTGSCLKVLH--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181
           ++     + + +      L +            +   P    +      +  V  +  + 
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 182 AECIGSRDFYRPI----ASIAFHASGELLAVASGHKLYIWRYNM 221
            +   +      +      I+    G+ + V S +   +    +
Sbjct: 69  DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL 112

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.8 bits (89), Expect = 0.002
 Identities = 31/289 (10%), Positives = 63/289 (21%), Gaps = 43/289 (14%)

Query: 109 STIAAAFSPDGKTL-----ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT 163
           S+         +       A   G     +     G  L    G      +         
Sbjct: 21  SSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGA--FLSLAVAGHSGSD 78

Query: 164 I---------IASGSLDHEVRLWNASTAECIGSRDFYRPIA--------SIAFHASGELL 206
                      A G     V +++  T   I   +               I   AS   L
Sbjct: 79  FALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACL 138

Query: 207 AVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSL 266
                        ++   +       +  +S    H HP AA            +S ++ 
Sbjct: 139 LFFLFGSSAAAGLSVPGAS-----DDQLTKSASCFHIHPGAAATHYL---GSCPASLAAS 190

Query: 267 TLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHD 326
            LA +P                  +    A+           P  +      S+   +  
Sbjct: 191 DLAAAPAAAG-----------IVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIP 239

Query: 327 SGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGT 375
           +     + ++  + S R       +G   +              + + +
Sbjct: 240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRS 288

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	767
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.92
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.92
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.92
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.91
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.91
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.9
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.89
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.88
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.88
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.87
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.86
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.85
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.85
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.85
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.84
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.81
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.81
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.8
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.8
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.8
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.79
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.76
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.74
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.73
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.73
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.73
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.71
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.7
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.69
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.69
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.68
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.65
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.64
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.64
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.57
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.55
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.5
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.41
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.39
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.33
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.25
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.13
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.13
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.98
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.97
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.8
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.8
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.77
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.68
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.42
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.39
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.39
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.3
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.21
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.09
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.04
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.97
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.97
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.95
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.92
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.81
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.78
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.73
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.73
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.65
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.58
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.58
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.52
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.36
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.24
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.15
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.74
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.44
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.56
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.09
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.31
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.99
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.3
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	91.99
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.86
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	91.67
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	91.48
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.19
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.57
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	89.1
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.97
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	87.95
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	87.91
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	87.75
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	87.26
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	86.52
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	86.24
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	85.41
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	85.36
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	85.01

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=3.6e-24  Score=223.83  Aligned_cols=194  Identities=14%  Similarity=0.162  Sum_probs=164.8

Q ss_pred             cceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCeEEEEeC--CCeEEEEECCCCeE
Q 004217           70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHG--DHTVKIIDCQTGSC  141 (767)
Q Consensus        70 ~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~------L~gH~~sVtsVaFSpDG~~LASgs~--DGtVrVWDl~tg~~  141 (767)
                      ....++++++++..|++++.|++|++||.....      +.+|...|.+++|+|++++|++++.  +..++|||+++++.
T Consensus        59 ~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~  138 (311)
T d1nr0a1          59 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS  138 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB
T ss_pred             CCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccc
Confidence            347778889999999999999999999998752      5689999999999999999999986  45699999999999


Q ss_pred             EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEc
Q 004217          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRY  219 (767)
Q Consensus       142 l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl  219 (767)
                      ...+.+|...|.+++|+|++...|++|+.|+.|++||+++++....+. |...|+++.|+|++++|++++.++ |++||+
T Consensus       139 ~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~  218 (311)
T d1nr0a1         139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG  218 (311)
T ss_dssp             CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccccccccccc
Confidence            999999999999999999444468999999999999999999888764 789999999999999999999665 999999


Q ss_pred             CCCccccC----CeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCC
Q 004217          220 NMREETSS----PRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE  263 (767)
Q Consensus       220 ~t~~~~~~----~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~  263 (767)
                      +++.....    .....+|...|++++|+|++++|++++.     +||+..++
T Consensus       219 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~  271 (311)
T d1nr0a1         219 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK  271 (311)
T ss_dssp             TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             ccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            88764331    1223468899999999999998877654     66665443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=1.2e-23  Score=219.72  Aligned_cols=241  Identities=12%  Similarity=0.082  Sum_probs=186.6

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE--EEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVL  145 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~--l~~L  145 (767)
                      ..+++...++..|+.+. ++.|.+|++.+.    .+.+|...|++++|+|||++|++|+.||+|+|||+.+++.  ...+
T Consensus        20 ~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~   98 (311)
T d1nr0a1          20 AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI   98 (311)
T ss_dssp             CCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE
T ss_pred             eEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccc
Confidence            34456677888888775 677999999876    3579999999999999999999999999999999988754  3567


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEEeC--CCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCE-EEEEECCc-EEEEEcC
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASGSL--DHEVRLWNASTAECIGSRD-FYRPIASIAFHASGEL-LAVASGHK-LYIWRYN  220 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSgS~--DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~-LAsgSdd~-V~VWDl~  220 (767)
                      .+|...|.+++|+| ++++|++++.  +..+++||+.+++....+. |...|.+++|+|++++ |++|+.++ |++||++
T Consensus        99 ~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~  177 (311)
T d1nr0a1          99 PVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP  177 (311)
T ss_dssp             ECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT
T ss_pred             ccccCccccccccc-cccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc
Confidence            89999999999999 8888988875  4669999999998877754 7889999999999985 77788666 9999999


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCce
Q 004217          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGL  295 (767)
Q Consensus       221 t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L  295 (767)
                      +.+...   ....|...|+++.|+|+++++++++.     +|++........+.   ..                 ..  
T Consensus       178 ~~~~~~---~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~---~~-----------------~~--  232 (311)
T d1nr0a1         178 PFKFKS---TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE---DD-----------------SL--  232 (311)
T ss_dssp             TBEEEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB---CT-----------------TS--
T ss_pred             cccccc---ccccccccccccccCcccccccccccccccccccccccccccccc---cc-----------------cc--
Confidence            887644   67789999999999999998777664     55555332211111   00                 00  


Q ss_pred             eeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217          296 AEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       296 ~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                        .......++...+|+||+++++..                 +....+.+||..+++....+
T Consensus       233 --~~~~h~~~V~~~~~s~~~~~l~tg-----------------s~Dg~v~iwd~~t~~~~~~l  276 (311)
T d1nr0a1         233 --KNVAHSGSVFGLTWSPDGTKIASA-----------------SADKTIKIWNVATLKVEKTI  276 (311)
T ss_dssp             --SSCSSSSCEEEEEECTTSSEEEEE-----------------ETTSEEEEEETTTTEEEEEE
T ss_pred             --ccccccccccccccCCCCCEEEEE-----------------eCCCeEEEEECCCCcEEEEE
Confidence              001123356678999999998862                 12235889999888877766

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.8e-23  Score=213.82  Aligned_cols=179  Identities=20%  Similarity=0.211  Sum_probs=163.9

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L  145 (767)
                      ...++++.++..|++++.|+.|++||....      .+..|...|.+++|+|++.+|++++.|+.|++||+.++++....
T Consensus       100 I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~  179 (337)
T d1gxra_         100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF  179 (337)
T ss_dssp             EEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            667888899999999999999999998754      35689999999999999999999999999999999999999999


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCcc
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE  224 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~  224 (767)
                      .+|...|.+++|++ +++.+++++.|+.|++||+++++.+..+.+...|.+++|+|++++|++++.++ |++||+++.+.
T Consensus       180 ~~~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~  258 (337)
T d1gxra_         180 QGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK  258 (337)
T ss_dssp             CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred             cccccccccccccc-cccccccccccccccccccccceeecccccccceEEEEEcccccccceecccccccccccccccc
Confidence            99999999999999 89999999999999999999999999999999999999999999999999766 99999998765


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       225 ~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .    ....|...|++++|+|++++|++++.
T Consensus       259 ~----~~~~~~~~i~~v~~s~~g~~l~s~s~  285 (337)
T d1gxra_         259 Y----QLHLHESCVLSLKFAYCGKWFVSTGK  285 (337)
T ss_dssp             E----EECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             c----cccccccccceEEECCCCCEEEEEeC
Confidence            3    36778999999999999998777653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-22  Score=212.16  Aligned_cols=233  Identities=12%  Similarity=0.090  Sum_probs=187.4

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC--Ce
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT--GS  140 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~---------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t--g~  140 (767)
                      +.+++++.+++.|++++ |+.|++||+...         ...+|.+.|.+++|+||+++|++|+.|++|++||+..  ++
T Consensus        54 V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~  132 (337)
T d1gxra_          54 VCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR  132 (337)
T ss_dssp             CCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E
T ss_pred             EEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccc
Confidence            56688899999999997 899999998764         1357999999999999999999999999999999875  45


Q ss_pred             EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECCc-EEEEE
Q 004217          141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWR  218 (767)
Q Consensus       141 ~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd~-V~VWD  218 (767)
                      ....+.+|...+..+.|+| ++.++++++.|+.|++||+.++++.... .|...|.+++|++++.++++++.++ |++||
T Consensus       133 ~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d  211 (337)
T d1gxra_         133 IKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD  211 (337)
T ss_dssp             EEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6677889999999999999 8999999999999999999999988775 4788999999999999999999655 99999


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCC
Q 004217          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHP  293 (767)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~  293 (767)
                      +++++.+.    ...|...|.+++|+|+++++++++.     +|+++..+..                            
T Consensus       212 ~~~~~~~~----~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----------------------------  259 (337)
T d1gxra_         212 LREGRQLQ----QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY----------------------------  259 (337)
T ss_dssp             TTTTEEEE----EEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE----------------------------
T ss_pred             cccceeec----ccccccceEEEEEcccccccceeccccccccccccccccc----------------------------
Confidence            99887644    4568899999999999998776654     4444322210                            


Q ss_pred             ceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217          294 GLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS  359 (767)
Q Consensus       294 ~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~  359 (767)
                      .    ......++....|+||++.++...                 ....+.+||..+++.-..+.
T Consensus       260 ~----~~~~~~~i~~v~~s~~g~~l~s~s-----------------~Dg~i~iwd~~~~~~~~~~~  304 (337)
T d1gxra_         260 Q----LHLHESCVLSLKFAYCGKWFVSTG-----------------KDNLLNAWRTPYGASIFQSK  304 (337)
T ss_dssp             E----ECCCSSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEE
T ss_pred             c----ccccccccceEEECCCCCEEEEEe-----------------CCCeEEEEECCCCCEEEEcc
Confidence            0    011223456789999999888622                 22357889988877765553

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3.9e-23  Score=219.31  Aligned_cols=183  Identities=15%  Similarity=0.132  Sum_probs=152.2

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE--E
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--K  143 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l--~  143 (767)
                      ..+++++.++..|++++.|+.|++|+..++      .+.+|.+.|.+++|+|++++|++|+.|++|+|||+.++...  .
T Consensus        10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~   89 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL   89 (371)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccc
Confidence            456788899999999999999999999765      36799999999999999999999999999999999877644  4


Q ss_pred             EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-----ecCCCCeEEEEEcCCCCEEEEEECCc-EEEE
Q 004217          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVASGHK-LYIW  217 (767)
Q Consensus       144 ~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-----l~h~~~VtsVafSPdG~~LAsgSdd~-V~VW  217 (767)
                      .+.+|...|.+++|+| +++.|++++.|++|++|++........     ..|...|.+++|+|++++|++|+.|+ |++|
T Consensus        90 ~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~  168 (371)
T d1k8kc_          90 VILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF  168 (371)
T ss_dssp             ECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cccccccccccccccc-ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEE
Confidence            5578899999999999 899999999999999999876543222     23788999999999999999999666 9999


Q ss_pred             EcCCCcccc---------------CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          218 RYNMREETS---------------SPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       218 Dl~t~~~~~---------------~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      |........               .......|...|.+++|+|++++|++++.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~  221 (371)
T d1k8kc_         169 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH  221 (371)
T ss_dssp             ECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET
T ss_pred             eeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc
Confidence            987543211               01234567889999999999997776654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1e-22  Score=206.55  Aligned_cols=180  Identities=17%  Similarity=0.227  Sum_probs=146.2

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEE---------------
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVK---------------  132 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVr---------------  132 (767)
                      ...++++.++..|++++.|++|++||..++    .+..|...|.+++|+|++++|++|+.|+.++               
T Consensus        58 I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~  137 (340)
T d1tbga_          58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR  137 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEE
T ss_pred             EEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccce
Confidence            455667777777888888888888877765    3556777777777777777776666555544               


Q ss_pred             ------------------------------------------------------------------------EEECCCCe
Q 004217          133 ------------------------------------------------------------------------IIDCQTGS  140 (767)
Q Consensus       133 ------------------------------------------------------------------------VWDl~tg~  140 (767)
                                                                                              +||+++++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~  217 (340)
T d1tbga_         138 ELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM  217 (340)
T ss_dssp             EECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCc
Confidence                                                                                    55555566


Q ss_pred             EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee---cCCCCeEEEEEcCCCCEEEEEECCc-EEE
Q 004217          141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR---DFYRPIASIAFHASGELLAVASGHK-LYI  216 (767)
Q Consensus       141 ~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l---~h~~~VtsVafSPdG~~LAsgSdd~-V~V  216 (767)
                      ++..+.+|...|.+++|+| ++++|++|+.|+.|++||++..+....+   .+...|.+++|+|++++|++|+.++ |++
T Consensus       218 ~~~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~i  296 (340)
T d1tbga_         218 CRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV  296 (340)
T ss_dssp             EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEE
T ss_pred             EEEEEeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEE
Confidence            6777888999999999999 8999999999999999999999887765   3567899999999999999999766 999


Q ss_pred             EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       217 WDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ||+.+++.+.   .+.+|...|++++|+||+++|++++.
T Consensus       297 wd~~~~~~~~---~~~~H~~~V~~l~~s~d~~~l~s~s~  332 (340)
T d1tbga_         297 WDALKADRAG---VLAGHDNRVSCLGVTDDGMAVATGSW  332 (340)
T ss_dssp             EETTTCCEEE---EECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             EECCCCcEEE---EEcCCCCCEEEEEEeCCCCEEEEEcc
Confidence            9999888655   77889999999999999998877664

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=5.7e-22  Score=207.19  Aligned_cols=251  Identities=18%  Similarity=0.221  Sum_probs=188.1

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----------------------CCCCCCCeEEEEECCCCCeEEEEeCC
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYCP----------------------LSPPPRSTIAAAFSPDGKTLASTHGD  128 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----------------------L~gH~~sVtsVaFSpDG~~LASgs~D  128 (767)
                      ...+++++.+|+.|++|+ |++|++||+.+++                      ...|...|++++|+||+++|++|+.|
T Consensus        64 ~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~d  142 (388)
T d1erja_          64 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED  142 (388)
T ss_dssp             CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccc
Confidence            366788889999999986 8999999987642                      23577889999999999999999999


Q ss_pred             CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcC-CCCEEE
Q 004217          129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHA-SGELLA  207 (767)
Q Consensus       129 GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSP-dG~~LA  207 (767)
                      +.|++||..+++.+..+.+|...|.++.|++ ++..+++++.++.+++||.++........+.....++.|++ ++++|+
T Consensus       143 g~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  221 (388)
T d1erja_         143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA  221 (388)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccccc-ccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEE
Confidence            9999999999999999999999999999999 88999999999999999999999888877666667777665 788999


Q ss_pred             EEECCc-EEEEEcCCCccccC----CeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccC
Q 004217          208 VASGHK-LYIWRYNMREETSS----PRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRY  277 (767)
Q Consensus       208 sgSdd~-V~VWDl~t~~~~~~----~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~  277 (767)
                      +++.++ |++||++++.....    .....+|...|++++|+|++++|++++.     +|+++..............   
T Consensus       222 ~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---  298 (388)
T d1erja_         222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG---  298 (388)
T ss_dssp             EEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------------
T ss_pred             EEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccccc---
Confidence            998666 99999998765431    1223468899999999999998777654     6666644332211111000   


Q ss_pred             CCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeee
Q 004217          278 PPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELV  357 (767)
Q Consensus       278 p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~  357 (767)
                        ....              ........+...+|+||++.|+...                 ....+.+||..+++....
T Consensus       299 --~~~~--------------~~~~~~~~v~~~~~s~~~~~l~sg~-----------------~dg~i~vwd~~~~~~~~~  345 (388)
T d1erja_         299 --TCEV--------------TYIGHKDFVLSVATTQNDEYILSGS-----------------KDRGVLFWDKKSGNPLLM  345 (388)
T ss_dssp             --CEEE--------------EEECCSSCEEEEEECGGGCEEEEEE-----------------TTSEEEEEETTTCCEEEE
T ss_pred             --ceee--------------ecccccceEEEEEECCCCCEEEEEe-----------------CCCEEEEEECCCCcEEEE
Confidence              0011              0111234566789999999988722                 223588999999888777


Q ss_pred             ec
Q 004217          358 LS  359 (767)
Q Consensus       358 ~~  359 (767)
                      +.
T Consensus       346 l~  347 (388)
T d1erja_         346 LQ  347 (388)
T ss_dssp             EE
T ss_pred             Ee
Confidence            74

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=7.8e-21  Score=188.69  Aligned_cols=243  Identities=18%  Similarity=0.229  Sum_probs=191.0

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~  146 (767)
                      ....++++.++..|++++.|++|++||+.+++    +.+|...|.+++|++++.+++++..++.+.+|+....+....+.
T Consensus        19 ~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (317)
T d1vyhc1          19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH   98 (317)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC
T ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccc
Confidence            35667788899999999999999999998873    67899999999999999999999999999999999999888899


Q ss_pred             cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCcc
Q 004217          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE  224 (767)
Q Consensus       147 gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~  224 (767)
                      +|...+.++.|+| +++.+++++.|+.+++||+++++.+..+. |...+.+++|+|++++|++++.++ |++||+.+.+.
T Consensus        99 ~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~  177 (317)
T d1vyhc1          99 GHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC  177 (317)
T ss_dssp             CCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             cccccceeeeccC-CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeecccee
Confidence            9999999999999 89999999999999999999999888764 788999999999999999999766 99999998876


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCe--------------------EEEEEe-----eCCcCCCCcceeEeecCCCcc---
Q 004217          225 TSSPRIVLRTRRSLRAVHFHPHAAP--------------------LLLTAE-----VNDLDSSESSLTLATSPGYWR---  276 (767)
Q Consensus       225 ~~~~~~l~~h~~~VtsVaFSPDG~~--------------------LlaSgs-----vwdl~s~~~~~~l~t~sG~~~---  276 (767)
                      ..   .+..|...+.++.|+|++..                    +++++.     +|++..+.....+..+.+...   
T Consensus       178 ~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~  254 (317)
T d1vyhc1         178 KA---ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL  254 (317)
T ss_dssp             EE---EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             eE---EEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEE
Confidence            44   56678888888888886542                    333322     666665544333322211100   


Q ss_pred             -----------CCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEE
Q 004217          277 -----------YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (767)
Q Consensus       277 -----------~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva  320 (767)
                                 .....+.+|+...+.......+   ...++...+|+||++.|+.
T Consensus       255 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---h~~~V~~~~~s~~~~~l~s  306 (317)
T d1vyhc1         255 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA---HEHFVTSLDFHKTAPYVVT  306 (317)
T ss_dssp             ECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC---CSSCEEEEEECSSSSCEEE
T ss_pred             ECCCCCEEEEEECCCeEEEEECCCCcEEEEEcC---CCCCEEEEEEcCCCCEEEE
Confidence                       0124456666555444433332   3456677889999998886

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=2.1e-21  Score=192.95  Aligned_cols=181  Identities=18%  Similarity=0.279  Sum_probs=162.3

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ........++..+++++.|+.+++|+..++    .+.+|...+.+++|++++++|++++.|+.|++|++.+++.+..+.+
T Consensus       104 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~  183 (317)
T d1vyhc1         104 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE  183 (317)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             ceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEec
Confidence            556667788999999999999999999876    3678999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEccC-------------------CCcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEE
Q 004217          148 HRRTPWVVRFHPL-------------------NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLA  207 (767)
Q Consensus       148 H~~~V~sLafsP~-------------------dg~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LA  207 (767)
                      |...+.++.|+|.                   .+.++++++.|+.|++||+++++++..+ .|...|.+++|+|++++|+
T Consensus       184 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  263 (317)
T d1vyhc1         184 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL  263 (317)
T ss_dssp             CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEE
T ss_pred             CCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEE
Confidence            9999999999883                   2357999999999999999999998886 4889999999999999999


Q ss_pred             EEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          208 VASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       208 sgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +++.++ |++||+++++.+.   .+.+|...|++++|+|++++|++++.
T Consensus       264 s~~~dg~i~iwd~~~~~~~~---~~~~h~~~V~~~~~s~~~~~l~s~s~  309 (317)
T d1vyhc1         264 SCADDKTLRVWDYKNKRCMK---TLNAHEHFVTSLDFHKTAPYVVTGSV  309 (317)
T ss_dssp             EEETTTEEEEECCTTSCCCE---EEECCSSCEEEEEECSSSSCEEEEET
T ss_pred             EEECCCeEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence            999665 9999999887654   77889999999999999998877664

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=5.8e-21  Score=193.55  Aligned_cols=213  Identities=15%  Similarity=0.163  Sum_probs=160.4

Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCC
Q 004217          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~t  181 (767)
                      +|.||.+.|++++|+|++++|++|+.||+|+|||+.+++.+..+.+|...|.+++|+| +++++++++.|+.+++|+...
T Consensus        50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~~i~~~~~~~  128 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKT  128 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECT-TSSEEEEEETTCCEEEEESSS
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeec-cceeeeeecccceeecccccc
Confidence            4789999999999999999999999999999999999999999999999999999999 999999999999999999764


Q ss_pred             CeE----EEe------------------------------------------ecCCCCeEEEEEcCCCCEEEEEECCc-E
Q 004217          182 AEC----IGS------------------------------------------RDFYRPIASIAFHASGELLAVASGHK-L  214 (767)
Q Consensus       182 g~~----i~~------------------------------------------l~h~~~VtsVafSPdG~~LAsgSdd~-V  214 (767)
                      ...    ...                                          ..+...+....+.+.+.++++++.++ |
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  208 (340)
T d1tbga_         129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA  208 (340)
T ss_dssp             SCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEE
T ss_pred             cccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceE
Confidence            321    000                                          01334567788888999999998666 9


Q ss_pred             EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCc-----------c--
Q 004217          215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYW-----------R--  276 (767)
Q Consensus       215 ~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~-----------~--  276 (767)
                      ++||+++++...   .+.+|...|++++|+|++++|++++.     +|+++.......+.......           .  
T Consensus       209 ~i~d~~~~~~~~---~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
T d1tbga_         209 KLWDVREGMCRQ---TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL  285 (340)
T ss_dssp             EEEETTTTEEEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEE
T ss_pred             EEEECCCCcEEE---EEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEE
Confidence            999999988655   67789999999999999998777654     67776544332221111100           0  


Q ss_pred             ---CCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEe
Q 004217          277 ---YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (767)
Q Consensus       277 ---~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~  321 (767)
                         .....+.+|+...........   ....++..++|+||+..|+..
T Consensus       286 ~~g~~dg~i~iwd~~~~~~~~~~~---~H~~~V~~l~~s~d~~~l~s~  330 (340)
T d1tbga_         286 LAGYDDFNCNVWDALKADRAGVLA---GHDNRVSCLGVTDDGMAVATG  330 (340)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSCEEEE
T ss_pred             EEEECCCEEEEEECCCCcEEEEEc---CCCCCEEEEEEeCCCCEEEEE
Confidence               012345566655444333222   245567788999999988863

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.87  E-value=1.3e-20  Score=190.80  Aligned_cols=189  Identities=12%  Similarity=0.105  Sum_probs=150.3

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC----C-CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe-----
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYCP----L-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-----  140 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L-~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~-----  140 (767)
                      ...+++++.+++.|++++.|++|++||+++++    + .+|...|++++|+|++++ ++++.|+.+++|+.....     
T Consensus        14 ~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~~~~   92 (299)
T d1nr0a2          14 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVDSSK   92 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSSCTTS
T ss_pred             CcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccCCccccccc
Confidence            36677888899999999999999999998763    3 478999999999999875 556778999999964310     


Q ss_pred             ---------E-------------------EEEE-------ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEE
Q 004217          141 ---------C-------------------LKVL-------HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI  185 (767)
Q Consensus       141 ---------~-------------------l~~L-------~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i  185 (767)
                               .                   +..+       ......+.+++|+| +++++++|+.|+.|++||+++++..
T Consensus        93 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~  171 (299)
T d1nr0a2          93 AVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVS  171 (299)
T ss_dssp             CCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence                     0                   0000       01234577889999 8899999999999999999988765


Q ss_pred             E--eecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eC
Q 004217          186 G--SRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VN  257 (767)
Q Consensus       186 ~--~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vw  257 (767)
                      .  ...|...|.+++|+|++++|++++.++ |++||+.++........+..|...|++++|+|++++|++++.     +|
T Consensus       172 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iw  251 (299)
T d1nr0a2         172 EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW  251 (299)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEE
Confidence            4  356889999999999999999999665 999999887765545566779999999999999997777654     55


Q ss_pred             CcCC
Q 004217          258 DLDS  261 (767)
Q Consensus       258 dl~s  261 (767)
                      ++..
T Consensus       252 d~~~  255 (299)
T d1nr0a2         252 NMNK  255 (299)
T ss_dssp             ETTC
T ss_pred             ECCC
Confidence            5554

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=1.4e-20  Score=199.41  Aligned_cols=180  Identities=16%  Similarity=0.157  Sum_probs=152.3

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE---
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC---  141 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~---  141 (767)
                      ....++++.++..|++++.|++|++||+..+      .+.+|...|.+++|+|++++|++|+.|++|++|+++....   
T Consensus        53 ~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~  132 (371)
T d1k8kc_          53 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV  132 (371)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccc
Confidence            4667788889999999999999999999765      3678999999999999999999999999999999876542   


Q ss_pred             -EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe------------------EEEe-ecCCCCeEEEEEcC
Q 004217          142 -LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE------------------CIGS-RDFYRPIASIAFHA  201 (767)
Q Consensus       142 -l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~------------------~i~~-l~h~~~VtsVafSP  201 (767)
                       ......|...|.+++|+| ++++|++|+.|++|++||.....                  .+.. ..|...|.+++|+|
T Consensus       133 ~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  211 (371)
T d1k8kc_         133 CKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA  211 (371)
T ss_dssp             EEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred             ccccccccccccccccccc-cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec
Confidence             344567999999999999 99999999999999999986532                  2222 34778899999999


Q ss_pred             CCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          202 SGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       202 dG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +|++|++++.|+ |++||+.++..+.   .+..|..+|.+++|+||+++ ++++.
T Consensus       212 ~g~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~v~s~~fs~d~~~-la~g~  262 (371)
T d1k8kc_         212 NGSRVAWVSHDSTVCLADADKKMAVA---TLASETLPLLAVTFITESSL-VAAGH  262 (371)
T ss_dssp             SSSEEEEEETTTEEEEEEGGGTTEEE---EEECSSCCEEEEEEEETTEE-EEEET
T ss_pred             ccccccccccCCcceEEeeeccccee---eeecccccceeeeecCCCCE-EEEEc
Confidence            999999999766 9999999887654   67788999999999999984 45553

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.85  E-value=3.1e-20  Score=187.96  Aligned_cols=208  Identities=14%  Similarity=0.140  Sum_probs=151.8

Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE-ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECC
Q 004217          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS  180 (767)
Q Consensus       102 ~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L-~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~  180 (767)
                      .+.||.+.|++++|+||+++|++|+.||+|+|||+++++++..+ .+|...|.+++|+| +++ +++++.|+++++|+..
T Consensus         7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~-~g~-~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGD-LFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSC-EEEEETTTEEEEECSS
T ss_pred             EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeec-cce-eecccceeeEEEeccC
Confidence            46799999999999999999999999999999999999988887 47999999999999 666 5566789999999975


Q ss_pred             CCeE---------------------------------EE--------eecCCCCeEEEEEcCCCCEEEEEECCc-EEEEE
Q 004217          181 TAEC---------------------------------IG--------SRDFYRPIASIAFHASGELLAVASGHK-LYIWR  218 (767)
Q Consensus       181 tg~~---------------------------------i~--------~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWD  218 (767)
                      ....                                 +.        .......+.+++|+|++++|++++.++ |++||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d  164 (299)
T d1nr0a2          85 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYK  164 (299)
T ss_dssp             SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             Cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3211                                 00        001234567889999999999999666 99999


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCC
Q 004217          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHP  293 (767)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~  293 (767)
                      +++.+...  .....|...|++++|+|++++|++++.     +|++............                      
T Consensus       165 ~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~----------------------  220 (299)
T d1nr0a2         165 LSGASVSE--VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW----------------------  220 (299)
T ss_dssp             EETTEEEE--EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCC----------------------
T ss_pred             cccccccc--cccccccccccccccccccccccccccccccccccccccccccccccc----------------------
Confidence            98776432  345678999999999999998777654     4444322211111111                      


Q ss_pred             ceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217          294 GLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       294 ~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                            .....++...+|+|++..++....                 ...+.+||..+++....+
T Consensus       221 ------~~h~~~v~~l~~s~~~~~l~sgs~-----------------dg~i~iwd~~~~~~~~~~  262 (299)
T d1nr0a2         221 ------TFHTAKVACVSWSPDNVRLATGSL-----------------DNSVIVWNMNKPSDHPII  262 (299)
T ss_dssp             ------CCCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTCTTSCCEE
T ss_pred             ------cccccccccccccccccceEEEcC-----------------CCEEEEEECCCCCcceEE
Confidence                  112335556789999999887222                 234778888776554443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.2e-19  Score=189.39  Aligned_cols=194  Identities=21%  Similarity=0.246  Sum_probs=158.3

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g  147 (767)
                      ...++++.++..|++++.|+.|++|+...+    .+.+|...|.+++|++++..+++++.++.|++||..+.........
T Consensus       124 V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  203 (388)
T d1erja_         124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI  203 (388)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccc
Confidence            556778889999999999999999999876    3678999999999999999999999999999999999988877765


Q ss_pred             CCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee--------cCCCCeEEEEEcCCCCEEEEEECCc-EEEEE
Q 004217          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--------DFYRPIASIAFHASGELLAVASGHK-LYIWR  218 (767)
Q Consensus       148 H~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l--------~h~~~VtsVafSPdG~~LAsgSdd~-V~VWD  218 (767)
                      +. ....+.|++.++++|++++.|+.|++||+.++.....+        .|...|.+++|+|++++|++++.++ |++||
T Consensus       204 ~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd  282 (388)
T d1erja_         204 ED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN  282 (388)
T ss_dssp             SS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cc-ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEe
Confidence            54 45566777768899999999999999999998877664        3678899999999999999999666 99999


Q ss_pred             cCCCcccc---------CCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcce
Q 004217          219 YNMREETS---------SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSL  266 (767)
Q Consensus       219 l~t~~~~~---------~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~  266 (767)
                      +++.....         .......|...|.+++|+|++++|++++.     +||+..++...
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~  344 (388)
T d1erja_         283 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL  344 (388)
T ss_dssp             C---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE
T ss_pred             ccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE
Confidence            98765322         12244568899999999999998877664     77877655433

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=5.9e-20  Score=191.60  Aligned_cols=189  Identities=12%  Similarity=0.102  Sum_probs=154.9

Q ss_pred             eEEEEEE--cCCCEEEEEeCCCeEEEEeCCCC------------CCCCCCCCeEEEEECCCCCeEEEEeC--CCeEEEEE
Q 004217           72 QIFEAGR--DARRGLASWVEAESLHHLRPKYC------------PLSPPPRSTIAAAFSPDGKTLASTHG--DHTVKIID  135 (767)
Q Consensus        72 ~~~vA~s--d~g~~LaSgs~DgsIrlWd~~t~------------~L~gH~~sVtsVaFSpDG~~LASgs~--DGtVrVWD  135 (767)
                      ..+++++  .++..|++++.|++|++||....            .+..|.+.|.+++|++++++|++++.  ++.+++|+
T Consensus        66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~  145 (325)
T d1pgua1          66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS  145 (325)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEE
T ss_pred             EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEe
Confidence            5566675  46789999999999999998653            23468899999999999999988765  67899999


Q ss_pred             CCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee----cCCCCeEEEEEcCC-CCEEEEEE
Q 004217          136 CQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAFHAS-GELLAVAS  210 (767)
Q Consensus       136 l~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l----~h~~~VtsVafSPd-G~~LAsgS  210 (767)
                      .++++++..+.+|...|.+++|+|.+..++++++.|+.|++||+...+.....    .+...|.+++|+|+ +.+|++++
T Consensus       146 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~  225 (325)
T d1pgua1         146 WDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG  225 (325)
T ss_dssp             TTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE
T ss_pred             ecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccc
Confidence            99999999999999999999999955567889999999999999988776653    36778999999997 57899888


Q ss_pred             CCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEc---cCCCeEEEEEe-----eCCcCCCC
Q 004217          211 GHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFH---PHAAPLLLTAE-----VNDLDSSE  263 (767)
Q Consensus       211 dd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFS---PDG~~LlaSgs-----vwdl~s~~  263 (767)
                      .|+ |++||+++++.+.   .+.+|...+..+.|+   |||++|++++.     +||+...+
T Consensus       226 ~d~~i~iwd~~~~~~~~---~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~  284 (325)
T d1pgua1         226 SDRKISCFDGKSGEFLK---YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK  284 (325)
T ss_dssp             TTCCEEEEETTTCCEEE---ECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTE
T ss_pred             cccceeeeeeccccccc---cccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCC
Confidence            655 9999999888655   566777777666666   68887777664     67766544

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=5.9e-21  Score=203.87  Aligned_cols=174  Identities=19%  Similarity=0.223  Sum_probs=146.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC----------------------CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 004217           81 RRGLASWVEAESLHHLRPKYC----------------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT  138 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t~----------------------~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t  138 (767)
                      +..+++++.|+.+++|++...                      ....+...+.+++|+||+ +||+|+.|++|+|||+.+
T Consensus       136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~  214 (393)
T d1sq9a_         136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST  214 (393)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT
T ss_pred             ccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecc
Confidence            467889999999999997432                      123456678999999997 899999999999999999


Q ss_pred             CeEEEEE------ccCCCCcEEEEEccCCCcEEEEEeCCCe---EEEEECCCCeEEEee--------------cCCCCeE
Q 004217          139 GSCLKVL------HGHRRTPWVVRFHPLNPTIIASGSLDHE---VRLWNASTAECIGSR--------------DFYRPIA  195 (767)
Q Consensus       139 g~~l~~L------~gH~~~V~sLafsP~dg~lLaSgS~DGt---VrIWDl~tg~~i~~l--------------~h~~~Vt  195 (767)
                      ++++..+      .+|...|.+++|+| ++++|++|+.|++   |++||+++++++..+              +|...|+
T Consensus       215 ~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~  293 (393)
T d1sq9a_         215 LRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM  293 (393)
T ss_dssp             TEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE
T ss_pred             cccccccccccccccccceEEEccccc-ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCcee
Confidence            9877654      57899999999999 9999999999974   999999999887765              4888999


Q ss_pred             EEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeE----EEEEccCCCeEEEEEeeCCcC
Q 004217          196 SIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLR----AVHFHPHAAPLLLTAEVNDLD  260 (767)
Q Consensus       196 sVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~Vt----sVaFSPDG~~LlaSgsvwdl~  260 (767)
                      +++|+|+|++|++++.|+ |+|||+++++.+.   .+.+|...|.    .++|+|++..++ ++++|++.
T Consensus       294 ~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~---~l~gH~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~  359 (393)
T d1sq9a_         294 SLSFNDSGETLCSAGWDGKLRFWDVKTKERIT---TLNMHCDDIEIEEDILAVDEHGDSLA-EPGVFDVK  359 (393)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCGGGCSSGGGCCCBCTTSCBCS-SCCEEEEE
T ss_pred             eeccCCCCCeeEEECCCCEEEEEECCCCCEEE---EECCcCCcccCCccEEEECCCCCEEE-EcccceEE
Confidence            999999999999999766 9999999998765   7789988775    588999998654 44556554

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.81  E-value=2e-18  Score=176.80  Aligned_cols=172  Identities=10%  Similarity=-0.015  Sum_probs=143.9

Q ss_pred             EEc-CCCEEEEEeCCCeEEEEeCCCCC--CCCCCCCeEEEEECCCCCeEEEEeCCC--eEEEEECCCCeEEEEEccCCCC
Q 004217           77 GRD-ARRGLASWVEAESLHHLRPKYCP--LSPPPRSTIAAAFSPDGKTLASTHGDH--TVKIIDCQTGSCLKVLHGHRRT  151 (767)
Q Consensus        77 ~sd-~g~~LaSgs~DgsIrlWd~~t~~--L~gH~~sVtsVaFSpDG~~LASgs~DG--tVrVWDl~tg~~l~~L~gH~~~  151 (767)
                      ++. +|+.++.++ ++.|.+||.+.++  ..+|...|.+++|+|||++|++++.+.  .|++||+++++ +..+..|...
T Consensus        10 fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-~~~~~~~~~~   87 (360)
T d1k32a3          10 FSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-AEKFEENLGN   87 (360)
T ss_dssp             EEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-EEECCCCCCS
T ss_pred             ccCCCCCEEEEEE-CCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc-EEEeeCCCce
Confidence            455 788888776 5799999998873  347999999999999999998877653  79999998877 4567789999


Q ss_pred             cEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEEC----------C-cEEEEEc
Q 004217          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG----------H-KLYIWRY  219 (767)
Q Consensus       152 V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSd----------d-~V~VWDl  219 (767)
                      |.+++|+| ++++|++++.++.+++|++.+++....+. +...+.+++|+|+|++|+.+..          + .+++||+
T Consensus        88 v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~  166 (360)
T d1k32a3          88 VFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM  166 (360)
T ss_dssp             EEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred             EEeeeecc-cccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeecc
Confidence            99999999 99999999999999999999999887754 6778899999999999987641          1 2899999


Q ss_pred             CCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       220 ~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .+++...    ...+...+..++|+|||++|++.+.
T Consensus       167 ~~~~~~~----~~~~~~~~~~~~~spdg~~l~~~s~  198 (360)
T d1k32a3         167 EGRKIFA----ATTENSHDYAPAFDADSKNLYYLSY  198 (360)
T ss_dssp             TTTEEEE----CSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             ccCceee----ecccccccccccccCCCCEEEEEeC
Confidence            8876433    5567788899999999998887664

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=4.4e-18  Score=177.22  Aligned_cols=181  Identities=10%  Similarity=0.064  Sum_probs=137.8

Q ss_pred             EEEEEEcCCCEEEEEeCCCe-EEEEeCCCC------CCCCCC-CCeEEEEECC--CCCeEEEEeCCCeEEEEECCCCe--
Q 004217           73 IFEAGRDARRGLASWVEAES-LHHLRPKYC------PLSPPP-RSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGS--  140 (767)
Q Consensus        73 ~~vA~sd~g~~LaSgs~Dgs-IrlWd~~t~------~L~gH~-~sVtsVaFSp--DG~~LASgs~DGtVrVWDl~tg~--  140 (767)
                      ..+++...+..|+.++.+.. |+.|+....      ++.+|. ..|++++|+|  ++++|++|+.||+|+|||+..++  
T Consensus        21 t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~  100 (325)
T d1pgua1          21 THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES  100 (325)
T ss_dssp             CCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcce
Confidence            34556677888887765543 577775443      355774 6799999998  67899999999999999986543  


Q ss_pred             ------EEEEEccCCCCcEEEEEccCCCcEEEEEeC--CCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCE-EEEEE
Q 004217          141 ------CLKVLHGHRRTPWVVRFHPLNPTIIASGSL--DHEVRLWNASTAECIGSRD-FYRPIASIAFHASGEL-LAVAS  210 (767)
Q Consensus       141 ------~l~~L~gH~~~V~sLafsP~dg~lLaSgS~--DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~-LAsgS  210 (767)
                            ....+..|.+.|.+++|++ +++++++++.  ++.+++|+..+++++..+. |...|.+++|+|++.+ +++++
T Consensus       101 ~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  179 (325)
T d1pgua1         101 NSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG  179 (325)
T ss_dssp             TEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEE
T ss_pred             eeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEee
Confidence                  1234567899999999999 8888877654  6789999999999888865 8899999999999875 66677


Q ss_pred             CCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          211 GHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       211 dd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      .++ |++||+...+..........|...|++++|+||+..+++++
T Consensus       180 ~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~  224 (325)
T d1pgua1         180 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV  224 (325)
T ss_dssp             TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE
T ss_pred             cccccccccccccccceecccccCCCCccEEeeeccccceecccc
Confidence            655 99999987765442223446788899999999854445444

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=6.2e-18  Score=170.71  Aligned_cols=182  Identities=17%  Similarity=0.237  Sum_probs=140.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCC--cE
Q 004217           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT--PW  153 (767)
Q Consensus        80 ~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~--V~  153 (767)
                      +++.|++|+.|++|++||..++    ++.+|.+.|++++|+++ .+|++|+.|++|++|+....+.......+...  ..
T Consensus        22 ~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~  100 (355)
T d1nexb2          22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL  100 (355)
T ss_dssp             ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccccccc
Confidence            5789999999999999999887    46799999999999985 58999999999999999999887766544433  44


Q ss_pred             EEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec------------------------CCCCeEEEEEcCCCCEEEEE
Q 004217          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD------------------------FYRPIASIAFHASGELLAVA  209 (767)
Q Consensus       154 sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~------------------------h~~~VtsVafSPdG~~LAsg  209 (767)
                      ...+++ ++.++++++.|++|++||+.+........                        +...  ...+.+++++++++
T Consensus       101 ~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~  177 (355)
T d1nexb2         101 DIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS--VRTVSGHGNIVVSG  177 (355)
T ss_dssp             EEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSC--EEEEEEETTEEEEE
T ss_pred             cccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccc--ccccccccceeeee
Confidence            566777 88899999999999999998766543321                        1112  23456778899999


Q ss_pred             ECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004217          210 SGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL  268 (767)
Q Consensus       210 Sdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l  268 (767)
                      ..+. |++||+++.+...   ....+...+.++.|+|++.++++++.     +|++..+.....+
T Consensus       178 ~~d~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  239 (355)
T d1nexb2         178 SYDNTLIVWDVAQMKCLY---ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  239 (355)
T ss_dssp             ETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             cccceeeeeeccccccee---eeeccccccccccccccceeeecccccceEEeeecccccccccc
Confidence            8766 9999999887654   56678889999999999998877664     6777765544443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=1.2e-18  Score=176.10  Aligned_cols=173  Identities=18%  Similarity=0.207  Sum_probs=146.6

Q ss_pred             EEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCC
Q 004217           76 AGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (767)
Q Consensus        76 A~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~  151 (767)
                      ....++..++.+..|+.|++||..+.+    ..++...+.++.|+++++++++++.|++|++||++++..+..+++|...
T Consensus       166 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~  245 (355)
T d1nexb2         166 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL  245 (355)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             ccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccc
Confidence            344567899999999999999998763    5678899999999999999999999999999999999999999999999


Q ss_pred             cEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEE
Q 004217          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIV  231 (767)
Q Consensus       152 V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l  231 (767)
                      |.+++|++   ++|++++.||+|++||+++........+........|++++++|++|+++.|+|||+++++.+.  ..+
T Consensus       246 v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~--~~~  320 (355)
T d1nexb2         246 VGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH--ANI  320 (355)
T ss_dssp             CCEEEECS---SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCC--SCT
T ss_pred             cccccccc---ceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEE--EEe
Confidence            99999965   7999999999999999998877665544444444567889999999988889999999988754  245


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe
Q 004217          232 LRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       232 ~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .+|...|.+++|+|+  .++++++
T Consensus       321 ~~~~~~V~~v~~~~~--~~~~~~s  342 (355)
T d1nexb2         321 LKDADQIWSVNFKGK--TLVAAVE  342 (355)
T ss_dssp             TTTCSEEEEEEEETT--EEEEEEE
T ss_pred             cCCCCCEEEEEEcCC--eEEEEEE
Confidence            678999999999986  3555544

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.4e-17  Score=167.21  Aligned_cols=177  Identities=18%  Similarity=0.330  Sum_probs=129.7

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe--------------
Q 004217           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS--------------  140 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~--------------  140 (767)
                      -+++.|++++.|++|++||+.++    .+.+|...|.+++|+++  +|++|+.|+++++|+.....              
T Consensus        25 ~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (342)
T d2ovrb2          25 FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC  102 (342)
T ss_dssp             EETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             ECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEee
Confidence            35789999999999999999887    47899999999999864  89999988888888864321              


Q ss_pred             ------------------------------------------------------------------EEEEEccCCCCcEE
Q 004217          141 ------------------------------------------------------------------CLKVLHGHRRTPWV  154 (767)
Q Consensus       141 ------------------------------------------------------------------~l~~L~gH~~~V~s  154 (767)
                                                                                        .+..+.+|...+..
T Consensus       103 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  182 (342)
T d2ovrb2         103 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS  182 (342)
T ss_dssp             EEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE
T ss_pred             eecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccc
Confidence                                                                              12223344444443


Q ss_pred             EEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEe
Q 004217          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVL  232 (767)
Q Consensus       155 LafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~  232 (767)
                      +  .+ ++..+++++.|++|++||++.++++..+. |...+.+++++  +++|++++.++ |++||+...+.........
T Consensus       183 ~--~~-~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  257 (342)
T d2ovrb2         183 L--QF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPN  257 (342)
T ss_dssp             E--EE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTT
T ss_pred             c--cC-CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccc
Confidence            3  33 56899999999999999999999888754 77788887775  46999999766 9999998877544111223


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCc
Q 004217          233 RTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSES  264 (767)
Q Consensus       233 ~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~  264 (767)
                      .|...+.++.|++  +++++++.     +||++.++.
T Consensus       258 ~~~~~~~~~~~~~--~~~~s~s~Dg~i~iwd~~tg~~  292 (342)
T d2ovrb2         258 KHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEF  292 (342)
T ss_dssp             SCSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCE
T ss_pred             eeeeceeecccCC--CeeEEEcCCCEEEEEECCCCCE
Confidence            3566777777754  55655543     666665443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.5e-18  Score=185.07  Aligned_cols=189  Identities=16%  Similarity=0.091  Sum_probs=143.7

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC--------------CCCCCCCeEEEEECCC-----CCeEEEEeCCCeEEEEECCCC---
Q 004217           82 RGLASWVEAESLHHLRPKYCP--------------LSPPPRSTIAAAFSPD-----GKTLASTHGDHTVKIIDCQTG---  139 (767)
Q Consensus        82 ~~LaSgs~DgsIrlWd~~t~~--------------L~gH~~sVtsVaFSpD-----G~~LASgs~DGtVrVWDl~tg---  139 (767)
                      ..+++++.|+.|++|+.....              ...+...+..++|.++     +.++++++.|++|++||+...   
T Consensus        80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~  159 (393)
T d1sq9a_          80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  159 (393)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             cEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcc
Confidence            457789999999999875421              1235567888888875     467899999999999997421   


Q ss_pred             ---------e---E---EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-------cCCCCeEEE
Q 004217          140 ---------S---C---LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-------DFYRPIASI  197 (767)
Q Consensus       140 ---------~---~---l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-------~h~~~VtsV  197 (767)
                               .   .   ......+...+.+++|+| ++ +|++|+.|++|+|||+.+++++..+       .|...|.++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l  237 (393)
T d1sq9a_         160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV  237 (393)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred             cceeeeeeccceecccceecccCCCCcEEEEEECC-CC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEc
Confidence                     0   1   111134556789999999 54 8999999999999999999887653       378899999


Q ss_pred             EEcCCCCEEEEEECCc----EEEEEcCCCccccC----------CeEEecCCCCeEEEEEccCCCeEEEEEe-----eCC
Q 004217          198 AFHASGELLAVASGHK----LYIWRYNMREETSS----------PRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VND  258 (767)
Q Consensus       198 afSPdG~~LAsgSdd~----V~VWDl~t~~~~~~----------~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwd  258 (767)
                      +|+|+|++|++|++|+    |++||+.+++.+..          .....+|...|++|+|+||+++|++++.     +||
T Consensus       238 ~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  317 (393)
T ss_dssp             EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence            9999999999999653    99999998765431          1123479999999999999997777664     888


Q ss_pred             cCCCCcceeEeecCCCc
Q 004217          259 LDSSESSLTLATSPGYW  275 (767)
Q Consensus       259 l~s~~~~~~l~t~sG~~  275 (767)
                      ++.++.   +.++.||.
T Consensus       318 ~~~g~~---~~~l~gH~  331 (393)
T d1sq9a_         318 VKTKER---ITTLNMHC  331 (393)
T ss_dssp             TTTTEE---EEEEECCG
T ss_pred             CCCCCE---EEEECCcC
Confidence            887654   44455663

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.3e-17  Score=164.39  Aligned_cols=170  Identities=16%  Similarity=0.285  Sum_probs=138.3

Q ss_pred             EEcCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCc
Q 004217           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (767)
Q Consensus        77 ~sd~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V  152 (767)
                      .......++.++.|+.|++|+....    .+.+|...+..+.+  ++.+|++++.|+.|++||++.++.+..+.+|...+
T Consensus       143 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v  220 (342)
T d2ovrb2         143 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT  220 (342)
T ss_dssp             EEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCE
T ss_pred             eccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccce
Confidence            3456677888999999999999875    46788877777666  68899999999999999999999999999999999


Q ss_pred             EEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec----CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccC
Q 004217          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD----FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS  227 (767)
Q Consensus       153 ~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~----h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~  227 (767)
                      .++.+++   ++|++++.|++|++||+...+....+.    |...+.++.|+  +++++++++|+ |++||+++++.+..
T Consensus       221 ~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~  295 (342)
T d2ovrb2         221 SGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRN  295 (342)
T ss_dssp             EEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             eEEecCC---CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEE
Confidence            9988865   699999999999999999988777653    45666666665  56999999766 99999999887551


Q ss_pred             CeE--EecCCCCeEEEEEccCCCeEEEE
Q 004217          228 PRI--VLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       228 ~~~--l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      ...  ..+|...|++++|+|++.+++++
T Consensus       296 ~~~~~~~~~~~~v~~v~~s~~~~~la~g  323 (342)
T d2ovrb2         296 LVTLESGGSGGVVWRIRASNTKLVCAVG  323 (342)
T ss_dssp             EEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred             EecccCCCCCCCEEEEEECCCCCEEEEE
Confidence            111  13577889999999998755444

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.5e-16  Score=152.46  Aligned_cols=165  Identities=22%  Similarity=0.342  Sum_probs=127.3

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE-----------
Q 004217           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-----------  143 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~-----------  143 (767)
                      -++..|++|+.|++|++||+.++    .+.+|.+.|++++|  ++++|++|+.|+.|++|++..+....           
T Consensus        23 ~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~  100 (293)
T d1p22a2          23 YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH  100 (293)
T ss_dssp             CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEE
T ss_pred             EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccccccccccccc
Confidence            47899999999999999999876    47799999999987  57899999999999999986653222           


Q ss_pred             --------------------------------EEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-C
Q 004217          144 --------------------------------VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-F  190 (767)
Q Consensus       144 --------------------------------~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h  190 (767)
                                                      .+..|...|..+.+.+   ..+++++.|+.|++||+++++.+..+. +
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~~~~  177 (293)
T d1p22a2         101 LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTLNGH  177 (293)
T ss_dssp             EECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             ccccccceeecccccceeEeeccccccccccccccccccccccceecc---cccccccCCCceeeecCCCCcEEEEEccc
Confidence                                            2234555566555544   678889999999999999998887764 6


Q ss_pred             CCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          191 YRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       191 ~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ...+..+.++  +.++++++.++ |++||+++...+.   ....|...+..  +++++.+|++++.
T Consensus       178 ~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~v~~--~~~~~~~l~sg~~  236 (293)
T d1p22a2         178 KRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR---VLEGHEELVRC--IRFDNKRIVSGAY  236 (293)
T ss_dssp             SSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEE--EECCSSEEEEEET
T ss_pred             ccccccccCC--CCeEEEecCCCEEEEEecccceeee---eecccceeeee--ccccceEEEEEcC
Confidence            6677777665  56888888655 9999999887654   56667777664  5567776666654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=1.6e-16  Score=158.49  Aligned_cols=254  Identities=8%  Similarity=-0.036  Sum_probs=169.2

Q ss_pred             ceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCC-CCeEEEEeCCCeEEEEECCCCeEE
Q 004217           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGSCL  142 (767)
Q Consensus        71 s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~-------L~gH~~sVtsVaFSpD-G~~LASgs~DGtVrVWDl~tg~~l  142 (767)
                      ....++++.++..|++++.|++|++||+....       ..+|...|.+++|+++ +.+|++|+.|++|++|++..+...
T Consensus        13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~   92 (342)
T d1yfqa_          13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF   92 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE
T ss_pred             CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccc
Confidence            46778888999999999999999999986542       2369999999999985 568999999999999999988877


Q ss_pred             EEEccCCCCcE-EEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe----ec---CCCCeEEEEEcCCCCEEEEEECCc-
Q 004217          143 KVLHGHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS----RD---FYRPIASIAFHASGELLAVASGHK-  213 (767)
Q Consensus       143 ~~L~gH~~~V~-sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~----l~---h~~~VtsVafSPdG~~LAsgSdd~-  213 (767)
                      .....+...+. ...+.+ +...+++++.|+++++||++++.....    ..   .........+.+++..+++++.++ 
T Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  171 (342)
T d1yfqa_          93 QALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQ  171 (342)
T ss_dssp             EECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTE
T ss_pred             cccccccccccccccccc-ccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCc
Confidence            77665555544 444555 889999999999999999875432222    11   233445667788889999998666 


Q ss_pred             EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeEeecCCCccCCCCeEEEecC
Q 004217          214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLATSPGYWRYPPPVICMAGA  287 (767)
Q Consensus       214 V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~  287 (767)
                      |++||++.............+...+.+..+.+.....++++.      +|+++......         . ......+...
T Consensus       172 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~---------~-~~~~~~~~~~  241 (342)
T d1yfqa_         172 VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY---------N-SSKRFAFRCH  241 (342)
T ss_dssp             EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST---------T-CTTCEEEECC
T ss_pred             EEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCccee---------e-ccccceeeee
Confidence            999999887765433344455566777776665443444433      33333211100         0 0000111100


Q ss_pred             CCCCCCceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217          288 HSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       288 ~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                            ...........++...+|+|++.+++...                 ....+.+||..+.+....+
T Consensus       242 ------~~~~~~~~~~~~v~~l~~sp~~~~lasg~-----------------~Dg~v~vWD~~~~~~l~~~  289 (342)
T d1yfqa_         242 ------RLNLKDTNLAYPVNSIEFSPRHKFLYTAG-----------------SDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             ------CCCTTCCSSCCCEEEEEECTTTCCEEEEE-----------------TTSCEEEEETTTTEEEEEC
T ss_pred             ------eeccCCCcccccceeEEecCCccEEEEEC-----------------CCCEEEEEECCCCcEEEEe
Confidence                  00011112233445789999999988622                 2335889999888776655

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.73  E-value=8.4e-16  Score=153.37  Aligned_cols=249  Identities=13%  Similarity=0.169  Sum_probs=174.1

Q ss_pred             EEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCeEE-EEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccC
Q 004217           85 ASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL  160 (767)
Q Consensus        85 aSgs~DgsIrlWd~~t~~L~---gH~~sVtsVaFSpDG~~LA-Sgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~  160 (767)
                      ++.+.|++|.+||++++++.   .....+..++|+|||++|+ +++.++.|++||+.+++.+..+..+. .+..+.|+++
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~   84 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPD   84 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTT
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccc
Confidence            45678999999999988532   2345688999999999874 66778999999999999999998775 4688999994


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC-Cc-EEEEEcCCCccccCCeEEecCCCCe
Q 004217          161 NPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HK-LYIWRYNMREETSSPRIVLRTRRSL  238 (767)
Q Consensus       161 dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd-d~-V~VWDl~t~~~~~~~~~l~~h~~~V  238 (767)
                      +..+++++..++.+.+||..+++....+.+...+.+++|+|+|+.++.+.. +. +.+|+..+.+...    ...+...+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  160 (301)
T d1l0qa2          85 GKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN----TVSVGRSP  160 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE----EEECCSSE
T ss_pred             cccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceee----ecccCCCc
Confidence            445666777889999999999999999888888999999999998877663 33 9999998887544    33455678


Q ss_pred             EEEEEccCCCeEEEEEe------eCCcCCCCcceeEee----------cCCCc------cCCCCeEEEecCCCCCCCcee
Q 004217          239 RAVHFHPHAAPLLLTAE------VNDLDSSESSLTLAT----------SPGYW------RYPPPVICMAGAHSSSHPGLA  296 (767)
Q Consensus       239 tsVaFSPDG~~LlaSgs------vwdl~s~~~~~~l~t----------~sG~~------~~p~~~v~l~~~~Ssd~~~L~  296 (767)
                      ..+.|+|++..++++..      +|+............          ..+..      ......+.+++..+.......
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~  240 (301)
T d1l0qa2         161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI  240 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred             eEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEE
Confidence            89999999998877754      222222111111111          00100      001123555554333221111


Q ss_pred             eccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeee
Q 004217          297 EEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL  358 (767)
Q Consensus       297 sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~  358 (767)
                      .    ........+|+|||+++++.                .+....+..||..+++.-..+
T Consensus       241 ~----~~~~~~~va~spdg~~l~va----------------~~~~~~i~v~D~~t~~~~~~~  282 (301)
T d1l0qa2         241 P----VGPDPAGIAVTPDGKKVYVA----------------LSFCNTVSVIDTATNTITATM  282 (301)
T ss_dssp             E----CCSSEEEEEECTTSSEEEEE----------------ETTTTEEEEEETTTTEEEEEE
T ss_pred             c----CCCCEEEEEEeCCCCEEEEE----------------ECCCCeEEEEECCCCeEEEEE
Confidence            1    11234578999999998761                112346888999999887777

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.73  E-value=7.9e-17  Score=164.81  Aligned_cols=188  Identities=12%  Similarity=0.082  Sum_probs=141.9

Q ss_pred             EEEEECC-CCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCC--eEEEEECCCCeEEEe
Q 004217          111 IAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH--EVRLWNASTAECIGS  187 (767)
Q Consensus       111 tsVaFSp-DG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DG--tVrIWDl~tg~~i~~  187 (767)
                      ..-.||| ||+++|+++. +.|++||++++..++ + +|...|.+++|+| |+++|++++.|.  .|++||..+++....
T Consensus         6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~-~-~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~~~~~   81 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLK-V-PEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGKAEKF   81 (360)
T ss_dssp             GEEEEEECGGGCEEEEET-TEEEEECTTSSBEEE-C-SCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred             hcccccCCCCCEEEEEEC-CeEEEEECCCCcEEE-c-cCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCCcEEEe
Confidence            4568999 9999999875 799999999887655 3 6999999999999 888888766553  799999999998888


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcce
Q 004217          188 RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSL  266 (767)
Q Consensus       188 l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~  266 (767)
                      ..|...|.+++|+|+|++|++++.+. +++|++.+.+...   ....|...+.+++|+|||++|+.+...........  
T Consensus        82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~--  156 (360)
T d1k32a3          82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV---IERSREAMITDFTISDNSRFIAYGFPLKHGETDGY--  156 (360)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC--
T ss_pred             eCCCceEEeeeecccccccceeccccccccccccccceee---eeecccccccchhhccceeeeeeeccccccceeec--
Confidence            88999999999999999999999766 9999999887644   66778889999999999998887664322211100  


Q ss_pred             eEeecCCCccCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCEEEEee
Q 004217          267 TLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQH  322 (767)
Q Consensus       267 ~l~t~sG~~~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~rIva~~  322 (767)
                                 ....+.+++........+.    ........+.|+|||++|+...
T Consensus       157 -----------~~~~~~v~d~~~~~~~~~~----~~~~~~~~~~~spdg~~l~~~s  197 (360)
T d1k32a3         157 -----------VMQAIHVYDMEGRKIFAAT----TENSHDYAPAFDADSKNLYYLS  197 (360)
T ss_dssp             -----------CEEEEEEEETTTTEEEECS----CSSSBEEEEEECTTSCEEEEEE
T ss_pred             -----------cccceeeeccccCceeeec----ccccccccccccCCCCEEEEEe
Confidence                       1123444543332221111    1223445789999999999743

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=4e-16  Score=170.67  Aligned_cols=169  Identities=13%  Similarity=0.027  Sum_probs=132.3

Q ss_pred             EEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE--EEEE---ccCCCCcE
Q 004217           83 GLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVL---HGHRRTPW  153 (767)
Q Consensus        83 ~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~--l~~L---~gH~~~V~  153 (767)
                      .+++.+.+++|.+||..+++    +..| ..+..++|||||++|++++.|++|++||+.+++.  +..+   .+|.+.+.
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            35788999999999999874    4444 4699999999999999999999999999988753  3333   35556666


Q ss_pred             EEEEccCCCcE-EEEEeCCCeEEEEECCCCeEEEeec------------CCCCeEEEEEcCCCCEEEEEEC--CcEEEEE
Q 004217          154 VVRFHPLNPTI-IASGSLDHEVRLWNASTAECIGSRD------------FYRPIASIAFHASGELLAVASG--HKLYIWR  218 (767)
Q Consensus       154 sLafsP~dg~l-LaSgS~DGtVrIWDl~tg~~i~~l~------------h~~~VtsVafSPdG~~LAsgSd--d~V~VWD  218 (767)
                      +..|+| |+++ +++++.+++|++||..+++++..+.            +......+.++|+|..++++..  +.|.+||
T Consensus       113 s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d  191 (432)
T d1qksa2         113 SKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD  191 (432)
T ss_dssp             CCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             ecccCC-CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence            677888 7775 5788899999999999999877642            3456678999999997766653  4499999


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ..+.+...  .....+...+..++|+|||+++++++.
T Consensus       192 ~~~~~~~~--~~~i~~g~~~~~~~~spdg~~~~va~~  226 (432)
T d1qksa2         192 YTDLNNLK--TTEISAERFLHDGGLDGSHRYFITAAN  226 (432)
T ss_dssp             TTCSSEEE--EEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred             ccCCCcce--EEEEcccCccccceECCCCCEEEEecc
Confidence            98776433  223456678899999999998888764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=3.6e-16  Score=157.05  Aligned_cols=143  Identities=13%  Similarity=0.164  Sum_probs=115.7

Q ss_pred             EEEcCCCEEEEEeCC-CeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE-EEccC
Q 004217           76 AGRDARRGLASWVEA-ESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-VLHGH  148 (767)
Q Consensus        76 A~sd~g~~LaSgs~D-gsIrlWd~~t~-----~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~-~L~gH  148 (767)
                      +...++..++.+..+ +.+++|+....     ....|...|++++|+|++++|++|+.||.|++||+.+++... .+.+|
T Consensus       125 ~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h  204 (287)
T d1pgua2         125 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR  204 (287)
T ss_dssp             EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC
T ss_pred             eeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccc
Confidence            344456666666665 57999998654     234678899999999999999999999999999999988664 46789


Q ss_pred             CCCcEEEEEccC---------CCcEEEEEeCCCeEEEEECCC-CeEEEee-cCCCCeEEEEEcCCCCEEEEEECC-cEEE
Q 004217          149 RRTPWVVRFHPL---------NPTIIASGSLDHEVRLWNAST-AECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYI  216 (767)
Q Consensus       149 ~~~V~sLafsP~---------dg~lLaSgS~DGtVrIWDl~t-g~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd-~V~V  216 (767)
                      ...|.+++|+|.         ++.+|++|+.|++|++||+++ .+.+..+ .|...|++++|+|+++ |++++.| .|++
T Consensus       205 ~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~~v~i  283 (287)
T d1pgua2         205 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKR  283 (287)
T ss_dssp             SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEE
T ss_pred             ccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECCCeEEE
Confidence            999999999872         356899999999999999987 4455554 5899999999999875 5566654 5999


Q ss_pred             EEc
Q 004217          217 WRY  219 (767)
Q Consensus       217 WDl  219 (767)
                      ||+
T Consensus       284 W~i  286 (287)
T d1pgua2         284 WNV  286 (287)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            996

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=3.2e-15  Score=150.82  Aligned_cols=141  Identities=15%  Similarity=0.164  Sum_probs=116.8

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCeE-EEEeCCCeEEEEECCCCeEEEEEccCC-----
Q 004217           82 RGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHR-----  149 (767)
Q Consensus        82 ~~LaSgs~DgsIrlWd~~t~~------L~gH~~sVtsVaFSpDG~~L-ASgs~DGtVrVWDl~tg~~l~~L~gH~-----  149 (767)
                      .++++++.|++|++||.++.+      +..+...+.+++|+|||++| ++++.|+.|.+||+.+++.+..+..+.     
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            578999999999999999874      23455678899999999987 566789999999999999988886553     


Q ss_pred             CCcEEEEEccCCCcEEEEEe------------CCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEE
Q 004217          150 RTPWVVRFHPLNPTIIASGS------------LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIW  217 (767)
Q Consensus       150 ~~V~sLafsP~dg~lLaSgS------------~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VW  217 (767)
                      ..+..++|+| +++.++.+.            .+..+.+||..+++....+.....+..++|+|+|+++++++ +.+.+|
T Consensus        82 ~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~~  159 (337)
T d1pbyb_          82 KSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG-RDLHVM  159 (337)
T ss_dssp             ECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES-SSEEEE
T ss_pred             cceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc-CCccee
Confidence            3456799999 888777765            46789999999999999988888899999999999998875 447788


Q ss_pred             EcCCCcc
Q 004217          218 RYNMREE  224 (767)
Q Consensus       218 Dl~t~~~  224 (767)
                      |..+++.
T Consensus       160 d~~~~~~  166 (337)
T d1pbyb_         160 DPEAGTL  166 (337)
T ss_dssp             ETTTTEE
T ss_pred             eeecCcE
Confidence            8876643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.69  E-value=1.8e-15  Score=163.40  Aligned_cols=265  Identities=12%  Similarity=0.024  Sum_probs=170.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEE--E---ccCCCCc
Q 004217           82 RGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV--L---HGHRRTP  152 (767)
Q Consensus        82 ~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~--L---~gH~~~V  152 (767)
                      ..+++.++|++|++||..+++    +..| ..+..++|||||++|++++.|++|++||+.+++....  +   .+|...+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~  111 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE  111 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence            345678899999999999874    3444 4699999999999999999999999999998874432  2   3566667


Q ss_pred             EEEEEccCCCcEE-EEEeCCCeEEEEECCCCeEEEeec------------CCCCeEEEEEcCCCCEEEEEECCc--EEEE
Q 004217          153 WVVRFHPLNPTII-ASGSLDHEVRLWNASTAECIGSRD------------FYRPIASIAFHASGELLAVASGHK--LYIW  217 (767)
Q Consensus       153 ~sLafsP~dg~lL-aSgS~DGtVrIWDl~tg~~i~~l~------------h~~~VtsVafSPdG~~LAsgSdd~--V~VW  217 (767)
                      .++.|+| |++++ +++..++++++||..+++++..+.            +......+.+++++..++....+.  +.++
T Consensus       112 ~s~~~sp-DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~  190 (426)
T d1hzua2         112 SSKFKGY-EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV  190 (426)
T ss_dssp             ECCSTTC-TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EeeeecC-CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence            7788889 77765 566689999999999998876542            334456778888888777766433  7677


Q ss_pred             EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeEeecCCCcc---------------
Q 004217          218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLATSPGYWR---------------  276 (767)
Q Consensus       218 Dl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~~~~l~t~sG~~~---------------  276 (767)
                      +........  .....+...+..+.|+|++++++++..      +++..................               
T Consensus       191 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (426)
T d1hzua2         191 NYKDIDNLT--VTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVW  268 (426)
T ss_dssp             ECSSSSSCE--EEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEE
T ss_pred             Eecccccee--eEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceE
Confidence            666554322  345577888999999999998888764      334443332222221110000               


Q ss_pred             ----CCCCeEEEecCCCCCCC----ceeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeecc
Q 004217          277 ----YPPPVICMAGAHSSSHP----GLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYS  348 (767)
Q Consensus       277 ----~p~~~v~l~~~~Ssd~~----~L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~  348 (767)
                          .....+.++........    .+...........+.++|+||++++++.-...          .+++....+..||
T Consensus       269 ~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~----------~s~~~~~tv~vwd  338 (426)
T d1hzua2         269 STSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFN----------PDARISQSVAVFD  338 (426)
T ss_dssp             EEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTC----------SSHHHHTCEEEEE
T ss_pred             EeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCC----------CCcccCCEEEEEE
Confidence                01112222221111000    11111112233456789999999999721111          1122334688999


Q ss_pred             CCCCceeeeecc
Q 004217          349 TPSGQYELVLSP  360 (767)
Q Consensus       349 ~~~~q~~~~~~p  360 (767)
                      .++++....+.|
T Consensus       339 ~~t~~~~~~~~~  350 (426)
T d1hzua2         339 LKNLDAKYQVLP  350 (426)
T ss_dssp             TTCTTSCCEEEC
T ss_pred             CCCCCcCeEEec
Confidence            999887766644

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=6.6e-16  Score=155.08  Aligned_cols=177  Identities=14%  Similarity=0.147  Sum_probs=129.8

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCC-C--CCCCCeEEEEECCCCCeEEEEeCCC-eEEEEECCCCeEEEEEc-
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPL-S--PPPRSTIAAAFSPDGKTLASTHGDH-TVKIIDCQTGSCLKVLH-  146 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L-~--gH~~sVtsVaFSpDG~~LASgs~DG-tVrVWDl~tg~~l~~L~-  146 (767)
                      ...+....++..++.+ .++.+.+|+...+.. .  .+...  ..+++++++.+++++.|+ .|++|++...+....+. 
T Consensus        83 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~  159 (287)
T d1pgua2          83 PKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNSP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT  159 (287)
T ss_dssp             EEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECSSC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSS
T ss_pred             eeeeeeccCCceEEEe-ecccceeeeccceeeeeeccccce--eeeeeccCcceeeeccccceeeeeeccccceeeeeee
Confidence            3444444444444443 455566676665421 1  12223  345667788888887764 79999998766655554 


Q ss_pred             cCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe--ecCCCCeEEEEEcCC----------CCEEEEEECCc-
Q 004217          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFHAS----------GELLAVASGHK-  213 (767)
Q Consensus       147 gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~--l~h~~~VtsVafSPd----------G~~LAsgSdd~-  213 (767)
                      .|...+++++|+| ++.+|++|+.|+.|++||+.+++....  ..|...|.+++|+|.          +.+|++|+.|+ 
T Consensus       160 ~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~  238 (287)
T d1pgua2         160 PLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN  238 (287)
T ss_dssp             CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC
T ss_pred             ccCCceeEEEecc-CccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCe
Confidence            4778899999999 899999999999999999999887654  357889999999875          45899999666 


Q ss_pred             EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       214 V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      |+|||+++....  ...+.+|...|++++|+|++. |++++.
T Consensus       239 i~iw~~~~~~~~--~~~~~~h~~~V~~v~~~~~~~-l~s~g~  277 (287)
T d1pgua2         239 IFIYSVKRPMKI--IKALNAHKDGVNNLLWETPST-LVSSGA  277 (287)
T ss_dssp             EEEEESSCTTCC--EEETTSSTTCEEEEEEEETTE-EEEEET
T ss_pred             EEEEECCCCCeE--EEEeCCCCCCeEEEEECCCCE-EEEEEC
Confidence            999999875432  235568999999999999875 666654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.1e-14  Score=142.49  Aligned_cols=158  Identities=20%  Similarity=0.384  Sum_probs=121.5

Q ss_pred             CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCC
Q 004217          103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA  182 (767)
Q Consensus       103 L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg  182 (767)
                      ..+|...|+|++|  ||++||+|+.||+|+|||+++++++.++++|.+.|++++|   ++++|++|+.|++|++|++..+
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~---~~~~l~s~s~D~~i~~~~~~~~   85 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTG   85 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSC
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec---ccceeecccccccccccccccc
Confidence            4568889998765  7999999999999999999999999999999999999987   4589999999999999999999


Q ss_pred             eEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----e
Q 004217          183 ECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----V  256 (767)
Q Consensus       183 ~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----v  256 (767)
                      ............. ..+.+....++++..++ +.+||...............|...|..+.+.++.  +++.+.     +
T Consensus        86 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~s~d~~i~~  162 (293)
T d1p22a2          86 EMLNTLIHHCEAV-LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKV  162 (293)
T ss_dssp             CEEEEECCCCSCE-EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTE--EEEEETTSEEEE
T ss_pred             ccccccccccccc-ccccccccceeecccccceeEeeccccccccccccccccccccccceecccc--cccccCCCceee
Confidence            8877765444433 33445556677777555 9999998876544344566788888888877543  444332     7


Q ss_pred             CCcCCCCcceeE
Q 004217          257 NDLDSSESSLTL  268 (767)
Q Consensus       257 wdl~s~~~~~~l  268 (767)
                      |+++..+....+
T Consensus       163 ~d~~~~~~~~~~  174 (293)
T d1p22a2         163 WNTSTCEFVRTL  174 (293)
T ss_dssp             EETTTCCEEEEE
T ss_pred             ecCCCCcEEEEE
Confidence            777765544333

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.64  E-value=3.3e-15  Score=161.23  Aligned_cols=293  Identities=10%  Similarity=0.011  Sum_probs=173.3

Q ss_pred             ceeecccccceec----CCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC---------CCCCCCCeEEEEECCCCCe
Q 004217           55 SKRLLGETARKCS----GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCP---------LSPPPRSTIAAAFSPDGKT  121 (767)
Q Consensus        55 sk~~wd~~~~~~~----~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~---------L~gH~~sVtsVaFSpDG~~  121 (767)
                      ...+||.....+.    ....+..++++.+|+.|++++.|++|++||+.+++         ..+|...+.+++|+|||++
T Consensus        43 ~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~  122 (426)
T d1hzua2          43 QIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY  122 (426)
T ss_dssp             EEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE
T ss_pred             EEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE
Confidence            4566665543321    22236678899999999999999999999998764         2256666778889999998


Q ss_pred             EEEE-eCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCC-----------CeEEEEECCCCeE--EEe
Q 004217          122 LAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD-----------HEVRLWNASTAEC--IGS  187 (767)
Q Consensus       122 LASg-s~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~D-----------GtVrIWDl~tg~~--i~~  187 (767)
                      |+++ ..++.+++||..+++++..+.+|...+..+.|.+......+..+.|           +.+.+++..+...  +..
T Consensus       123 l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  202 (426)
T d1hzua2         123 TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS  202 (426)
T ss_dssp             EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEE
T ss_pred             EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEE
Confidence            7554 5789999999999998888877765555444544222233333444           4444444444332  233


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEECC--cEEEEEcCCCccccCC------------eEEecCCCCeEEEEEccCCCeEEEE
Q 004217          188 RDFYRPIASIAFHASGELLAVASGH--KLYIWRYNMREETSSP------------RIVLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       188 l~h~~~VtsVafSPdG~~LAsgSdd--~V~VWDl~t~~~~~~~------------~~l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      +.+...+..++|+|++++++++..+  .+.+||..+++.....            .....+...+....+++++...+..
T Consensus       203 ~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~  282 (426)
T d1hzua2         203 IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIG  282 (426)
T ss_dssp             EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEE
T ss_pred             eccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEee
Confidence            5677788999999999998888743  3888888776543200            0111122233344444444322222


Q ss_pred             Ee--eCCcCCCCcceeEeecCCCcc---C-C-----------------CCeEEEecCCCCCCCcee------eccCCCCC
Q 004217          254 AE--VNDLDSSESSLTLATSPGYWR---Y-P-----------------PPVICMAGAHSSSHPGLA------EEVPLITP  304 (767)
Q Consensus       254 gs--vwdl~s~~~~~~l~t~sG~~~---~-p-----------------~~~v~l~~~~Ssd~~~L~------sg~~~~sl  304 (767)
                      ..  .|....++....+..+.....   + |                 ...+.+|+..+++.....      .+......
T Consensus       283 ~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~  362 (426)
T d1hzua2         283 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAK  362 (426)
T ss_dssp             CCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCC
T ss_pred             ccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCc
Confidence            21  222222222222222111100   0 1                 123566665554433221      12223345


Q ss_pred             CceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217          305 PFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS  359 (767)
Q Consensus       305 pil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~  359 (767)
                      +++.+.|||||++|++...            ...+....+..||..+.+....|.
T Consensus       363 rv~~~~fSpDGk~i~vs~~------------~~~~~~~~i~v~D~~T~k~~~~i~  405 (426)
T d1hzua2         363 RVVQPEYNKRGDEVWFSVW------------NGKNDSSALVVVDDKTLKLKAVVK  405 (426)
T ss_dssp             CEEEEEECSSSSEEEEEEC------------CCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEEe------------cCCCCCCeEEEEECCCCeEEEEEC
Confidence            6778999999999986110            011234458889999999887774

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=4.9e-15  Score=147.51  Aligned_cols=153  Identities=10%  Similarity=-0.009  Sum_probs=114.7

Q ss_pred             CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeE---EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEEC
Q 004217          103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC---LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (767)
Q Consensus       103 L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~---l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl  179 (767)
                      +.+|.+.|++|+|+||+++||+|+.|++|+|||++++..   +....+|...|.+++|+|.++.+|++|+.|++|++|++
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~   86 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeec
Confidence            568999999999999999999999999999999976543   23334799999999999956779999999999999999


Q ss_pred             CCCeEEEeec--CCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCe-EEec--CCCCeEEEEEccCCCeEEEE
Q 004217          180 STAECIGSRD--FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPR-IVLR--TRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       180 ~tg~~i~~l~--h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~-~l~~--h~~~VtsVaFSPDG~~LlaS  253 (767)
                      ..........  +........+.++...+++++.++ +++||++......... ....  .......+.+.+++..++++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (342)
T d1yfqa_          87 IGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG  166 (342)
T ss_dssp             SSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeee
Confidence            9877766643  334445566677788888888665 9999987655432111 1111  12344567778888877665


Q ss_pred             Ee
Q 004217          254 AE  255 (767)
Q Consensus       254 gs  255 (767)
                      +.
T Consensus       167 ~~  168 (342)
T d1yfqa_         167 MN  168 (342)
T ss_dssp             ES
T ss_pred             cC
Confidence            54

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=3.4e-13  Score=136.44  Aligned_cols=170  Identities=11%  Similarity=0.064  Sum_probs=125.6

Q ss_pred             EEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCeEEEEe-CCCeEEEEECCCCeEEEEE---ccCCCCcE
Q 004217           84 LASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKVL---HGHRRTPW  153 (767)
Q Consensus        84 LaSgs~DgsIrlWd~~t~------~L~gH~~sVtsVaFSpDG~~LASgs-~DGtVrVWDl~tg~~l~~L---~gH~~~V~  153 (767)
                      +++++++++|++|++...      +...|.+.+..|+|||||++|++++ .|+.|++|++........+   ..+...+.
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~   86 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT   86 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce
Confidence            467789999999998653      2337889999999999999996555 5899999999765432222   23445678


Q ss_pred             EEEEccCCCcEEEEEeC-CCeEEEEECCCCeEEEe---ecCCCCeEEEEEcCCCCEEEEEECC--cEEEEEcCCCccccC
Q 004217          154 VVRFHPLNPTIIASGSL-DHEVRLWNASTAECIGS---RDFYRPIASIAFHASGELLAVASGH--KLYIWRYNMREETSS  227 (767)
Q Consensus       154 sLafsP~dg~lLaSgS~-DGtVrIWDl~tg~~i~~---l~h~~~VtsVafSPdG~~LAsgSdd--~V~VWDl~t~~~~~~  227 (767)
                      .++|+| ++++|++++. +++|.+|+.........   ..+...+.++.|+|+++++++++.+  .|.+|+.........
T Consensus        87 ~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          87 HISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             EEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             EEEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            899999 8888877764 77899999887665444   3466778899999999999888843  399999876543221


Q ss_pred             C---eEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          228 P---RIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       228 ~---~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      .   ............++|++++.+++.+.
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~  195 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVN  195 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEE
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeec
Confidence            1   11223455678999999999877654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.55  E-value=1.5e-13  Score=138.94  Aligned_cols=197  Identities=13%  Similarity=0.049  Sum_probs=138.3

Q ss_pred             EEEcCCCEEEEEeCCCeEEEEeCCCCCC-----CCCCCCeEEEEECCCCCeE-EEEeCCCeEEEEECCCCeEEEEEccCC
Q 004217           76 AGRDARRGLASWVEAESLHHLRPKYCPL-----SPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (767)
Q Consensus        76 A~sd~g~~LaSgs~DgsIrlWd~~t~~L-----~gH~~sVtsVaFSpDG~~L-ASgs~DGtVrVWDl~tg~~l~~L~gH~  149 (767)
                      +++.+++++++++.+++|.+||+++.++     ..|...+.+++|+|||++| +++..++.|++||+.+++.+..+....
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~   82 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS   82 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccc
Confidence            3567899999999999999999998853     2456778999999999987 455678999999999999887765322


Q ss_pred             ------CCcEEEEEccCCCcEEEEEe------------CCCeEEE-----------------------------------
Q 004217          150 ------RTPWVVRFHPLNPTIIASGS------------LDHEVRL-----------------------------------  176 (767)
Q Consensus       150 ------~~V~sLafsP~dg~lLaSgS------------~DGtVrI-----------------------------------  176 (767)
                            ..+..++|+| ++++++.++            .++.+.+                                   
T Consensus        83 ~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          83 VPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             STTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             cccccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence                  2355678888 666554432            2333333                                   


Q ss_pred             ------EECCCCeEEEee--------------------------------------------------------------
Q 004217          177 ------WNASTAECIGSR--------------------------------------------------------------  188 (767)
Q Consensus       177 ------WDl~tg~~i~~l--------------------------------------------------------------  188 (767)
                            ||+.+++.+..+                                                              
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
T d1jmxb_         162 GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK  241 (346)
T ss_dssp             SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC
T ss_pred             CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc
Confidence                  443333322221                                                              


Q ss_pred             -------cCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----e
Q 004217          189 -------DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----V  256 (767)
Q Consensus       189 -------~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----v  256 (767)
                             .+...+..+.+++++.+++....+.|.+||+.+++.+.    ...+...+.+++|+|||+++++++.     +
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~----~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v  317 (346)
T d1jmxb_         242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIK----AANLDHTYYCVAFDKKGDKLYLGGTFNDLAV  317 (346)
T ss_dssp             EEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEE----EEECSSCCCEEEECSSSSCEEEESBSSEEEE
T ss_pred             eEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEE----EEcCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence                   11223445667777777777777889999999887654    2345567999999999999888764     7


Q ss_pred             CCcCCCCcceeEeecCCCccC
Q 004217          257 NDLDSSESSLTLATSPGYWRY  277 (767)
Q Consensus       257 wdl~s~~~~~~l~t~sG~~~~  277 (767)
                      ||+.+.+....+....|....
T Consensus       318 ~D~~t~~~i~~i~~p~g~~~~  338 (346)
T d1jmxb_         318 FNPDTLEKVKNIKLPGGDMST  338 (346)
T ss_dssp             EETTTTEEEEEEECSSSCCBT
T ss_pred             EECccCCEEEEEECCCCCcce
Confidence            888877776666665565443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.50  E-value=8.8e-13  Score=133.13  Aligned_cols=138  Identities=10%  Similarity=0.089  Sum_probs=106.7

Q ss_pred             EEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc-cCCCCcEEEEEccCCCcEE-EEEeCCCeEEEEECCCCeEEEeecC
Q 004217          113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-GHRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAECIGSRDF  190 (767)
Q Consensus       113 VaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~-gH~~~V~sLafsP~dg~lL-aSgS~DGtVrIWDl~tg~~i~~l~h  190 (767)
                      ++|++++++|++++.|++|.|||+++++.+++++ .|...+.+++|+| |++++ +++..++.|++||+.+++.+..+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECC-CCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            5789999999999999999999999999999887 4566789999999 76655 6777899999999999998877542


Q ss_pred             C-------CCeEEEEEcCCCCEEEEEE-------------CCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeE
Q 004217          191 Y-------RPIASIAFHASGELLAVAS-------------GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (767)
Q Consensus       191 ~-------~~VtsVafSPdG~~LAsgS-------------dd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~L  250 (767)
                      .       ..+..++|+|||+++++++             +..+.+||..+++..... ........+..+.+++++..+
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  159 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV-RTFPMPRQVYLMRAADDGSLY  159 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS-EEEECCSSCCCEEECTTSCEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEE-EeeeccCceEEEEecCCCEEE
Confidence            2       2356799999999888765             233899999887765422 222334556677777777744


Q ss_pred             EE
Q 004217          251 LL  252 (767)
Q Consensus       251 la  252 (767)
                      +.
T Consensus       160 ~~  161 (346)
T d1jmxb_         160 VA  161 (346)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.41  E-value=2.3e-11  Score=120.60  Aligned_cols=188  Identities=16%  Similarity=0.199  Sum_probs=142.8

Q ss_pred             eEEEEEEcCCCEE-EEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEE-EEeCCCeEEEEECCCCeEEEEEc
Q 004217           72 QIFEAGRDARRGL-ASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        72 ~~~vA~sd~g~~L-aSgs~DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LA-Sgs~DGtVrVWDl~tg~~l~~L~  146 (767)
                      ...+++..++..+ +++..++.+.+|+...++   ...+.....++.|+||++.++ ++..++.+.+|+..+++.+..+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (301)
T d1l0qa2          76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS  155 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccccccccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc
Confidence            4556666666654 456677889999998763   224566789999999999875 45568899999999999888887


Q ss_pred             cCCCCcEEEEEccCCCcEEEEEe-CCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE-C---CcEEEEEcCC
Q 004217          147 GHRRTPWVVRFHPLNPTIIASGS-LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-G---HKLYIWRYNM  221 (767)
Q Consensus       147 gH~~~V~sLafsP~dg~lLaSgS-~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS-d---d~V~VWDl~t  221 (767)
                      .+ ..+..+.|+| ++..++++. .++.+.+|+....+..........+..++|+++++.++++. +   +.|++||+.+
T Consensus       156 ~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t  233 (301)
T d1l0qa2         156 VG-RSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT  233 (301)
T ss_dssp             CC-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             cC-CCceEEEeec-cccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCC
Confidence            54 5578899999 666555555 45788899998888888887778889999999999876654 2   3499999998


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcc
Q 004217          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESS  265 (767)
Q Consensus       222 ~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs------vwdl~s~~~~  265 (767)
                      ++...   . ..+...+++++|+|||++|++++.      +||+.+++..
T Consensus       234 ~~~~~---~-~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         234 NKITA---R-IPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             TEEEE---E-EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CeEEE---E-EcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            87644   2 334567899999999998876654      6776655433

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.39  E-value=1.9e-11  Score=122.67  Aligned_cols=188  Identities=17%  Similarity=0.111  Sum_probs=137.4

Q ss_pred             eEEEEEEcCCCEE-EEEeCCCeEEEEeCCCCCCC----CC-----CCCeEEEEECCCCCeEEEEeC------------CC
Q 004217           72 QIFEAGRDARRGL-ASWVEAESLHHLRPKYCPLS----PP-----PRSTIAAAFSPDGKTLASTHG------------DH  129 (767)
Q Consensus        72 ~~~vA~sd~g~~L-aSgs~DgsIrlWd~~t~~L~----gH-----~~sVtsVaFSpDG~~LASgs~------------DG  129 (767)
                      +..++++.+|+.+ ++++.++.|.+||..++++.    .+     ...+..++|+||+++++++..            +.
T Consensus        36 ~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~  115 (337)
T d1pbyb_          36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT  115 (337)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred             ccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecccccc
Confidence            3456777888877 56778999999999887421    22     234568999999999988763            57


Q ss_pred             eEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec--------------------
Q 004217          130 TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--------------------  189 (767)
Q Consensus       130 tVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~--------------------  189 (767)
                      .+.+||..+++.+..+.. ...+..+.|+| +++++++++.|  +.+||..+++....+.                    
T Consensus       116 ~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (337)
T d1pbyb_         116 RVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ  191 (337)
T ss_dssp             EEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred             ceeeccccCCeEEEeccc-cCCceEEEEcC-CCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeecc
Confidence            899999999998888874 45688899999 88888887644  6778887765443321                    


Q ss_pred             -----------------------------------------------CCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCC
Q 004217          190 -----------------------------------------------FYRPIASIAFHASGELLAVASGHKLYIWRYNMR  222 (767)
Q Consensus       190 -----------------------------------------------h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~  222 (767)
                                                                     +...+..++++|++.+++.+ ++.|++||+.++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~  270 (337)
T d1pbyb_         192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKN  270 (337)
T ss_dssp             CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTT
T ss_pred             ccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc-cccEEEEECCCC
Confidence                                                           22234456677777777655 466999999998


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004217          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL  268 (767)
Q Consensus       223 ~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs-----vwdl~s~~~~~~l  268 (767)
                      +.+.    ...+...+.+++|+|||++|++++.     +||....+....+
T Consensus       271 ~~~~----~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i  317 (337)
T d1pbyb_         271 ASIK----RVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             EEEE----EEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             cEEE----EEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            8655    3346678899999999998887654     6777665544443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.33  E-value=2.8e-11  Score=131.65  Aligned_cols=171  Identities=11%  Similarity=-0.019  Sum_probs=131.6

Q ss_pred             eeecccccceec----CCcceEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCC---------CCCCCCeEEEEECCCCCeE
Q 004217           56 KRLLGETARKCS----GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPL---------SPPPRSTIAAAFSPDGKTL  122 (767)
Q Consensus        56 k~~wd~~~~~~~----~s~s~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L---------~gH~~sVtsVaFSpDG~~L  122 (767)
                      ..+||.....+.    ....+..++++.+|+++++++.|+.|++||+.+.+.         .+|.+.+.+..|||||++|
T Consensus        44 v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l  123 (432)
T d1qksa2          44 IALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA  123 (432)
T ss_dssp             EEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEE
T ss_pred             EEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEE
Confidence            455665433322    122367788999999999999999999999987532         2455667777888999986


Q ss_pred             -EEEeCCCeEEEEECCCCeEEEEEccC-----------CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEE--ee
Q 004217          123 -ASTHGDHTVKIIDCQTGSCLKVLHGH-----------RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG--SR  188 (767)
Q Consensus       123 -ASgs~DGtVrVWDl~tg~~l~~L~gH-----------~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~--~l  188 (767)
                       +++..+++|+|||.++++.+..+..|           ......+.++|++..++++...+++|.+||..+.+...  .+
T Consensus       124 ~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i  203 (432)
T d1qksa2         124 IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI  203 (432)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE
T ss_pred             EEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEE
Confidence             67888999999999999988877654           34456788899444556778888999999999877544  45


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEECC--cEEEEEcCCCcccc
Q 004217          189 DFYRPIASIAFHASGELLAVASGH--KLYIWRYNMREETS  226 (767)
Q Consensus       189 ~h~~~VtsVafSPdG~~LAsgSdd--~V~VWDl~t~~~~~  226 (767)
                      .+...+..++|+|+|+++++++.+  .+.++|..+.+...
T Consensus       204 ~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~  243 (432)
T d1qksa2         204 SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA  243 (432)
T ss_dssp             ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             cccCccccceECCCCCEEEEeccccceEEEeecccceEEE
Confidence            677788999999999999888843  39999998876543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.25  E-value=1.8e-09  Score=111.15  Aligned_cols=175  Identities=9%  Similarity=-0.020  Sum_probs=99.3

Q ss_pred             cEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-------CCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCcc
Q 004217          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-------FYRPIASIAFHASGELLAVASGHKLYIWRYNMREE  224 (767)
Q Consensus       152 V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-------h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~  224 (767)
                      +.++.|+|++...+++.+.|+++.+||..+++......       .......+.+++++.+++.+.++++++|+......
T Consensus       167 ~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  246 (373)
T d2madh_         167 PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA  246 (373)
T ss_pred             ceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeE
Confidence            34566777444566788889999999998877765532       12223456677777777777677799999887653


Q ss_pred             ccCCeEEecC----------CCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCccCCCCeEEEecCCCCCCCc
Q 004217          225 TSSPRIVLRT----------RRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPG  294 (767)
Q Consensus       225 ~~~~~~l~~h----------~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~~~p~~~v~l~~~~Ssd~~~  294 (767)
                      .. ......+          ......+++++++..++.........       .. .     .....+.+++...+....
T Consensus       247 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-------~~-~-----~~~~~v~~~d~~t~~~~~  312 (373)
T d2madh_         247 TN-KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW-------KL-H-----AAAKEVTSVTGLVGQTSS  312 (373)
T ss_pred             EE-EEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceE-------Ee-e-----cCCCeEEEEECCCCcEEE
Confidence            22 1111112          22344566777777555433211100       00 0     011234445533332222


Q ss_pred             eeeccCCCCCCceeeEEecCCCEEEEeecCCCCCCcccccccccCCceeeeeccCCCCceeeeec
Q 004217          295 LAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS  359 (767)
Q Consensus       295 L~sg~~~~slpil~psFSpDg~rIva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~~~~~~  359 (767)
                      ...    .......+.|+|||+++++...               .....+..||..+++....+.
T Consensus       313 ~~~----~~~~~~~~a~spDG~~~l~vt~---------------~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         313 QIS----LGHDVDAISVAQDGGPDLYALS---------------AGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             Eec----CCCCeeEEEECCCCCEEEEEEe---------------CCCCeEEEEECCCCCEEEEEC
Confidence            111    1223457899999997543111               123458899999999988884

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.13  E-value=1.8e-09  Score=109.89  Aligned_cols=110  Identities=10%  Similarity=-0.003  Sum_probs=78.7

Q ss_pred             EcCCCEEEEEe-----CCCeEEEEeCCCCCCCC--CCCCeEEEEECCCCCeEEEEe----------CCCeEEEEECCCCe
Q 004217           78 RDARRGLASWV-----EAESLHHLRPKYCPLSP--PPRSTIAAAFSPDGKTLASTH----------GDHTVKIIDCQTGS  140 (767)
Q Consensus        78 sd~g~~LaSgs-----~DgsIrlWd~~t~~L~g--H~~sVtsVaFSpDG~~LASgs----------~DGtVrVWDl~tg~  140 (767)
                      +.+++.++...     .+..|.+||..++++..  +.+.+..++|||||++|++.+          .|+.|++||+.+++
T Consensus        10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~   89 (355)
T d2bbkh_          10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL   89 (355)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCC
Confidence            45666665542     45679999998874221  122334799999999987653          47899999999999


Q ss_pred             EEEEEccCC-------CCcEEEEEccCCCcEEEEEe--CCCeEEEEECCCCeEEEee
Q 004217          141 CLKVLHGHR-------RTPWVVRFHPLNPTIIASGS--LDHEVRLWNASTAECIGSR  188 (767)
Q Consensus       141 ~l~~L~gH~-------~~V~sLafsP~dg~lLaSgS--~DGtVrIWDl~tg~~i~~l  188 (767)
                      .+..+..+.       .....+.|+| +++.++.++  .+..+.+||..+++.+..+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~  145 (355)
T d2bbkh_          90 PTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRML  145 (355)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred             EEEEEecCCcceeecCCCCceEEEec-CCCeeEEecCCCCceeeeeecCCCcEeeEE
Confidence            888775433       2345689999 777766654  5678999999998876553

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=2.5e-10  Score=114.94  Aligned_cols=133  Identities=9%  Similarity=0.094  Sum_probs=99.0

Q ss_pred             eEEEEeCCCeEEEEECCCCeEEEEE--ccCCCCcEEEEEccCCCcEE-EEEeCCCeEEEEECCCCeEE----EeecCCCC
Q 004217          121 TLASTHGDHTVKIIDCQTGSCLKVL--HGHRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAECI----GSRDFYRP  193 (767)
Q Consensus       121 ~LASgs~DGtVrVWDl~tg~~l~~L--~gH~~~V~sLafsP~dg~lL-aSgS~DGtVrIWDl~tg~~i----~~l~h~~~  193 (767)
                      .+++++.|++|+|||+.+...+..+  ..|.+.+..|+|+| |+++| +++..|+.|++|++......    ........
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            4577789999999999765433322  35888999999999 78777 55556899999999865432    22345566


Q ss_pred             eEEEEEcCCCCEEEEEEC-C-cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          194 IASIAFHASGELLAVASG-H-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       194 VtsVafSPdG~~LAsgSd-d-~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      +..++|+|||++|++++. + .|.+|+........ ......+...+.++.|+||+++++.+..
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~v~~s~d~~~~~~~~~  147 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG-VVDVVEGLDGCHSANISPDNRTLWVPAL  147 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEE-EEEEECCCTTBCCCEECTTSSEEEEEEG
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeecccccccee-cccccCCCccceEEEeeecceeeecccc
Confidence            788999999999999984 3 39999887765433 2234556778899999999998776653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.98  E-value=1.7e-08  Score=103.65  Aligned_cols=167  Identities=10%  Similarity=0.039  Sum_probs=114.5

Q ss_pred             EEEcCCCEE--EEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCCCeE-EEEeCCCeEEEEECCCCeEEEEEcc-----
Q 004217           76 AGRDARRGL--ASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHG-----  147 (767)
Q Consensus        76 A~sd~g~~L--aSgs~DgsIrlWd~~t~~L~gH~~sVtsVaFSpDG~~L-ASgs~DGtVrVWDl~tg~~l~~L~g-----  147 (767)
                      ++..+++.+  +.+..++.+.+|+....+...+.....++.|+++|+.+ ++.+.|+++.+||..+++.......     
T Consensus       131 ~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~  210 (373)
T d2madh_         131 ANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTA  210 (373)
T ss_pred             EEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeecccc
Confidence            344444443  34455677888888877777777778888999988755 5777888999998765543322110     


Q ss_pred             --------------------------------------------CC----------CCcEEEEEccCCCc----------
Q 004217          148 --------------------------------------------HR----------RTPWVVRFHPLNPT----------  163 (767)
Q Consensus       148 --------------------------------------------H~----------~~V~sLafsP~dg~----------  163 (767)
                                                                  +.          .....+.+++ ++.          
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~  289 (373)
T d2madh_         211 AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQS  289 (373)
T ss_pred             CccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEec-CCCeEEEecCCCc
Confidence                                                        00          0111233344 222          


Q ss_pred             EEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCE--EEEEECC-cEEEEEcCCCccccCCeEEecCCCCeEE
Q 004217          164 IIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGEL--LAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRA  240 (767)
Q Consensus       164 lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~--LAsgSdd-~V~VWDl~t~~~~~~~~~l~~h~~~Vts  240 (767)
                      .+++...++.+.+||..+++.+..+.+...+..++|+|||+.  +++++.+ .|++||+.+++.+.   .+..+....+.
T Consensus       290 ~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~---~~~~~g~~P~~  366 (373)
T d2madh_         290 AWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ---STVELGSGPQV  366 (373)
T ss_pred             eEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE---EECCCCCCCcE
Confidence            334455667899999999999999998899999999999984  3455544 49999999998766   66667777788


Q ss_pred             EEEccC
Q 004217          241 VHFHPH  246 (767)
Q Consensus       241 VaFSPD  246 (767)
                      |++.++
T Consensus       367 l~~~~~  372 (373)
T d2madh_         367 LSVMNE  372 (373)
T ss_pred             EEEecC
Confidence            877654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.97  E-value=2.1e-09  Score=115.96  Aligned_cols=140  Identities=11%  Similarity=0.112  Sum_probs=109.8

Q ss_pred             EEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEcc-----CCCCcEEEEEccCCCcEEEEEeC---------CCeEEEE
Q 004217          112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG-----HRRTPWVVRFHPLNPTIIASGSL---------DHEVRLW  177 (767)
Q Consensus       112 sVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~g-----H~~~V~sLafsP~dg~lLaSgS~---------DGtVrIW  177 (767)
                      .+.|.+|++++..  .|+.+.+||+.+++....+..     |...|.++.|+| |+++|+.++.         ++.+.||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC-CCCEEEEEECCcceeeeccCceEEEE
Confidence            5789999987764  578899999999987766644     457799999999 8998888753         5678999


Q ss_pred             ECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCe------EEec---------CCCCeEEEE
Q 004217          178 NASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPR------IVLR---------TRRSLRAVH  242 (767)
Q Consensus       178 Dl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~------~l~~---------h~~~VtsVa  242 (767)
                      |+.+++......+...+..+.|||||++||...++.+++|+..+++......      ...+         ..+....+.
T Consensus        98 d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~  177 (470)
T d2bgra1          98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW  177 (470)
T ss_dssp             ETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred             ECCCCcccccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence            9999987776778889999999999999999988889999998876543110      0111         123356688


Q ss_pred             EccCCCeEEEEE
Q 004217          243 FHPHAAPLLLTA  254 (767)
Q Consensus       243 FSPDG~~LlaSg  254 (767)
                      |||||++|+...
T Consensus       178 wSPDGk~ia~~~  189 (470)
T d2bgra1         178 WSPNGTFLAYAQ  189 (470)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             ECCCCCccceeE
Confidence            999999887764

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.80  E-value=1e-08  Score=110.45  Aligned_cols=136  Identities=13%  Similarity=0.128  Sum_probs=104.3

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECCCCCeEEEEeC---------CCeEEEEECCCCe
Q 004217           79 DARRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSPDGKTLASTHG---------DHTVKIIDCQTGS  140 (767)
Q Consensus        79 d~g~~LaSgs~DgsIrlWd~~t~---------~L~gH~~sVtsVaFSpDG~~LASgs~---------DGtVrVWDl~tg~  140 (767)
                      +++.++.  .+++.|.+||+.++         ++..|...|.++.|||||++|+.++.         ++.+.|||+++++
T Consensus        26 ~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~  103 (470)
T d2bgra1          26 SDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ  103 (470)
T ss_dssp             SSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred             CCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc
Confidence            3444443  35778999999876         35567789999999999999998854         5678999999887


Q ss_pred             EEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-------------------CCCCeEEEEEcC
Q 004217          141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-------------------FYRPIASIAFHA  201 (767)
Q Consensus       141 ~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-------------------h~~~VtsVafSP  201 (767)
                       +..+..|...+..+.|+| |++.++.. .|+.+.+|+..+++..+...                   ..+....+.|+|
T Consensus       104 -~~~l~~~~~~~~~~~~SP-DG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP  180 (470)
T d2bgra1         104 -LITEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP  180 (470)
T ss_dssp             -ECCSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT
T ss_pred             -ccccccCCcccccccccc-CcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECC
Confidence             556788999999999999 88888885 57789999999887765532                   112345678999


Q ss_pred             CCCEEEEEEC-Cc-EEEEEc
Q 004217          202 SGELLAVASG-HK-LYIWRY  219 (767)
Q Consensus       202 dG~~LAsgSd-d~-V~VWDl  219 (767)
                      ||++|+.... +. +..|++
T Consensus       181 DGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         181 NGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             TSSEEEEEEEECTTCCEEEE
T ss_pred             CCCccceeEecCCcCceEEE
Confidence            9999998873 33 555544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.80  E-value=4.1e-08  Score=102.08  Aligned_cols=245  Identities=9%  Similarity=-0.042  Sum_probs=147.6

Q ss_pred             EEEEcCCCEEEEEe----------CCCeEEEEeCCCCCCC----C-------CCCCeEEEEECCCCCeEEEEe-CCCeEE
Q 004217           75 EAGRDARRGLASWV----------EAESLHHLRPKYCPLS----P-------PPRSTIAAAFSPDGKTLASTH-GDHTVK  132 (767)
Q Consensus        75 vA~sd~g~~LaSgs----------~DgsIrlWd~~t~~L~----g-------H~~sVtsVaFSpDG~~LASgs-~DGtVr  132 (767)
                      .+++.+++.|+..+          .|+.|++||..+.+..    .       .......++|+|||++|+++. .++.+.
T Consensus        70 ~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~  149 (368)
T d1mdah_          70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAA  149 (368)
T ss_dssp             EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEE
T ss_pred             ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEE
Confidence            56677777777643          4678999999876321    1       112234689999999998876 579999


Q ss_pred             EEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEee-------cCCCCeEEEEEcCCCCE
Q 004217          133 IIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-------DFYRPIASIAFHASGEL  205 (767)
Q Consensus       133 VWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l-------~h~~~VtsVafSPdG~~  205 (767)
                      +||+.+++.+..+..+.....    .|.+...++..+.||++.+|++.........       .+...+..+.+.+++..
T Consensus       150 ~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  225 (368)
T d1mdah_         150 GLSVPGASDDQLTKSASCFHI----HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML  225 (368)
T ss_dssp             EEEETTTEEEEEEECSSCCCC----EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             EEECCCCcEeEEeeccCcceE----ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEE
Confidence            999999999988876655432    2224567888889999999998765443221       13344556778888766


Q ss_pred             EEEEECCcEEEEEcCCCccccCCeEEec----------CCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCCc
Q 004217          206 LAVASGHKLYIWRYNMREETSSPRIVLR----------TRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYW  275 (767)
Q Consensus       206 LAsgSdd~V~VWDl~t~~~~~~~~~l~~----------h~~~VtsVaFSPDG~~LlaSgsvwdl~s~~~~~~l~t~sG~~  275 (767)
                      +... .++++++++......... ....          .......+++++++..++..........              
T Consensus       226 ~~~~-~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~--------------  289 (368)
T d1mdah_         226 VWAV-ASSILQGDIPAAGATMKA-AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC--------------  289 (368)
T ss_dssp             EECB-SSCCEEEECCSSCCEEEC-CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCT--------------
T ss_pred             EEec-CCCEEEEeecCCceEEEe-ecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCcee--------------
Confidence            5443 344666666544322100 0000          1122345889999987766544222111              


Q ss_pred             cCCCCeEEEecCCCCCCCceeeccCCCCCCceeeEEecCCCE-EEEeecCCCCCCcccccccccCCceeeeeccCCCCce
Q 004217          276 RYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDER-ISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQY  354 (767)
Q Consensus       276 ~~p~~~v~l~~~~Ssd~~~L~sg~~~~slpil~psFSpDg~r-Iva~~~~~d~Gs~~~~~~~~ss~~~~l~~~~~~~~q~  354 (767)
                      ......+.+++..+.........    ......+.|+|||+. +++..                +....+.+||..+++.
T Consensus       290 ~~~~~~v~v~D~~t~~~~~~~~~----~~~~~~~a~spDG~~~ly~s~----------------~~~~~v~v~D~~tgk~  349 (368)
T d1mdah_         290 LAAAENTSSVTASVGQTSGPISN----GHDSDAIIAAQDGASDNYANS----------------AGTEVLDIYDAASDQD  349 (368)
T ss_dssp             TSCEEEEEEEESSSCCEEECCEE----EEEECEEEECCSSSCEEEEEE----------------TTTTEEEEEESSSCEE
T ss_pred             ecCCceEEEEECCCCcEeEEecC----CCceeEEEECCCCCEEEEEEe----------------CCCCeEEEEECCCCCE
Confidence            01112344555443322111111    112336899999985 55511                1234689999999998


Q ss_pred             eeeec
Q 004217          355 ELVLS  359 (767)
Q Consensus       355 ~~~~~  359 (767)
                      ...|.
T Consensus       350 ~~~i~  354 (368)
T d1mdah_         350 QSSVE  354 (368)
T ss_dssp             EEECC
T ss_pred             EEEEE
Confidence            88773

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.77  E-value=1.1e-08  Score=104.04  Aligned_cols=139  Identities=19%  Similarity=0.127  Sum_probs=99.4

Q ss_pred             CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEE--EEEccCC----------CCcEEEEEccCCCcEEEEEeCC-
Q 004217          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVLHGHR----------RTPWVVRFHPLNPTIIASGSLD-  171 (767)
Q Consensus       105 gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l--~~L~gH~----------~~V~sLafsP~dg~lLaSgS~D-  171 (767)
                      .+...+....+++++..++.++.++.+++|++..++..  .....+.          .....+++++ ++..++....+ 
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-d~~~~~~~~~~~  270 (355)
T d2bbkh_         192 EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQR  270 (355)
T ss_dssp             TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEEC
T ss_pred             eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC-CCCeEEEEeccC
Confidence            34455667788888999999999999999999887532  1222221          2234578888 66666554433 


Q ss_pred             ---------CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCC-EE-EEEEC-CcEEEEEcCCCccccCCeEEecCCCCeE
Q 004217          172 ---------HEVRLWNASTAECIGSRDFYRPIASIAFHASGE-LL-AVASG-HKLYIWRYNMREETSSPRIVLRTRRSLR  239 (767)
Q Consensus       172 ---------GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~-~L-AsgSd-d~V~VWDl~t~~~~~~~~~l~~h~~~Vt  239 (767)
                               ..|.+||..+++.+..+.....+.+++|+|||+ +| +++.. +.|++||+++++.+.   .+..+.....
T Consensus       271 ~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~---~i~~~G~~p~  347 (355)
T d2bbkh_         271 DEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR---SVNQLGHGPQ  347 (355)
T ss_dssp             CTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE---EECCCCSSCC
T ss_pred             CceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEE---EEeCcCCCcc
Confidence                     479999999999998887777889999999998 34 44443 449999999998765   5555655556


Q ss_pred             EEEEccCC
Q 004217          240 AVHFHPHA  247 (767)
Q Consensus       240 sVaFSPDG  247 (767)
                      .|.+.++|
T Consensus       348 ~i~~~d~~  355 (355)
T d2bbkh_         348 VITTADMG  355 (355)
T ss_dssp             EEECCCCC
T ss_pred             EEEeCCCC
Confidence            66655543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=9.2e-06  Score=79.37  Aligned_cols=147  Identities=14%  Similarity=0.170  Sum_probs=99.6

Q ss_pred             CCCCCCCeEEEEECCCCCeEEEEeCCC---eEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeC-CCe--EEE
Q 004217          103 LSPPPRSTIAAAFSPDGKTLASTHGDH---TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-DHE--VRL  176 (767)
Q Consensus       103 L~gH~~sVtsVaFSpDG~~LASgs~DG---tVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~-DGt--VrI  176 (767)
                      +..+...+...+|||||+.||....+.   .+.+.+..++.. ..+..+.+......|+| +++.++.... ++.  +..
T Consensus        34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~~~~  111 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYV  111 (269)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEE
T ss_pred             EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecC-CCCeeeEeeecCCccceee
Confidence            445567788999999999999875543   577778776664 44556778888999999 6776665443 333  333


Q ss_pred             EECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC--Cc--EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004217          177 WNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HK--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       177 WDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd--d~--V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~Lla  252 (767)
                      +.....................+++++..+...+.  +.  |.+.++......    .............|+|+++.++.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~~~~  187 (269)
T d2hqsa1         112 MDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ----RITWEGSQNQDADVSSDGKFMVM  187 (269)
T ss_dssp             EETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE----ECCCSSSEEEEEEECTTSSEEEE
T ss_pred             cccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce----eeecccccccccccccccceeEE
Confidence            44444444444555566667788888886666552  22  777777666432    24455667788999999998887


Q ss_pred             EEe
Q 004217          253 TAE  255 (767)
Q Consensus       253 Sgs  255 (767)
                      ...
T Consensus       188 ~~~  190 (269)
T d2hqsa1         188 VSS  190 (269)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.42  E-value=1.4e-06  Score=90.10  Aligned_cols=144  Identities=10%  Similarity=-0.125  Sum_probs=102.1

Q ss_pred             CCCCCeEEEEECCCCCeEEE---EeCC--CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEe----------
Q 004217          105 PPPRSTIAAAFSPDGKTLAS---THGD--HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS----------  169 (767)
Q Consensus       105 gH~~sVtsVaFSpDG~~LAS---gs~D--GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS----------  169 (767)
                      .+.+....++..+|++....   ...+  ..|.+||..+++.+..+.++...  .++|+| +++.|+..+          
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~sp-Dg~~i~~~~~~~~~~~~g~   93 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGK   93 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSS
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECC-CCCEEEEEcccCccccccc
Confidence            35555666677888886432   2333  45777899999999888777654  589999 777776643          


Q ss_pred             CCCeEEEEECCCCeEEEeecC--------CCCeEEEEEcCCCCEEEEEEC--CcEEEEEcCCCccccCCeEEecC-----
Q 004217          170 LDHEVRLWNASTAECIGSRDF--------YRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIVLRT-----  234 (767)
Q Consensus       170 ~DGtVrIWDl~tg~~i~~l~h--------~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~t~~~~~~~~~l~~h-----  234 (767)
                      .|++|++||..+++.+..+..        ......++|+|||++|+++..  +.+.+||+.+.+...   ....+     
T Consensus        94 ~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~  170 (368)
T d1mdah_          94 RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQ---LTKSASCFHI  170 (368)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEE---EEECSSCCCC
T ss_pred             cCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeE---EeeccCcceE
Confidence            478899999999998877531        122346899999999988863  449999999987654   22222     


Q ss_pred             --CCCeEEEEEccCCCeEEEEE
Q 004217          235 --RRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       235 --~~~VtsVaFSPDG~~LlaSg  254 (767)
                        ......+.+++||+.++...
T Consensus       171 ~~~~~~~~v~~~~Dg~~~~~~~  192 (368)
T d1mdah_         171 HPGAAATHYLGSCPASLAASDL  192 (368)
T ss_dssp             EEEETTEEECCCCTTSCEEEEC
T ss_pred             ccCCCceEEEEcCCCCEEEEEe
Confidence              23345678899998766654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=6.6e-05  Score=73.03  Aligned_cols=176  Identities=15%  Similarity=0.084  Sum_probs=112.4

Q ss_pred             EEEEEcCCCEEEEEeCCC---eEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeC-CCe--EEEEECCCCeEEEE
Q 004217           74 FEAGRDARRGLASWVEAE---SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG-DHT--VKIIDCQTGSCLKV  144 (767)
Q Consensus        74 ~vA~sd~g~~LaSgs~Dg---sIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~-DGt--VrVWDl~tg~~l~~  144 (767)
                      .-+++.+|+.|+-.....   .+.+.+....   ++..+.+......|+|||+.|+.... ++.  +..+....... ..
T Consensus        43 sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~-~~  121 (269)
T d2hqsa1          43 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQ  121 (269)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EE
T ss_pred             eeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccc-ee
Confidence            456778888887654433   2555555544   35577888999999999999887654 222  33333333332 23


Q ss_pred             EccCCCCcEEEEEccCCCcEEEEEeCCC--eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC-Cc---EEEEE
Q 004217          145 LHGHRRTPWVVRFHPLNPTIIASGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HK---LYIWR  218 (767)
Q Consensus       145 L~gH~~~V~sLafsP~dg~lLaSgS~DG--tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd-d~---V~VWD  218 (767)
                      ............+++.+...+++...++  .|.+.++..+................|+|+|++++..+. ++   +.+.|
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~  201 (269)
T d2hqsa1         122 VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD  201 (269)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred             eeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEee
Confidence            3334444555677774444555555555  456667776665555556677788899999998887763 32   55555


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      ...+..     ....+........|||||++|+.++.
T Consensus       202 ~~~~~~-----~~~~~~~~~~~p~~SPDG~~i~f~s~  233 (269)
T d2hqsa1         202 LATGGV-----QVLSSTFLDETPSLAPNGTMVIYSSS  233 (269)
T ss_dssp             TTTCCE-----EECCCSSSCEEEEECTTSSEEEEEEE
T ss_pred             cccccc-----eEeecCccccceEECCCCCEEEEEEc
Confidence            554432     33445566788999999999987764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.39  E-value=1.2e-05  Score=81.78  Aligned_cols=176  Identities=10%  Similarity=0.080  Sum_probs=120.8

Q ss_pred             EEEEEcCCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCe-EEEEE--ccC
Q 004217           74 FEAGRDARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVL--HGH  148 (767)
Q Consensus        74 ~vA~sd~g~~LaSgs~DgsIrlWd~~t~--~L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~-~l~~L--~gH  148 (767)
                      -+++..+|..+++...+++|..|+....  .+......+.+++|++||+++++...++.+.+|+..... ....+  ...
T Consensus        32 ~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (302)
T d2p4oa1          32 NLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPD  111 (302)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred             CEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCC
Confidence            3567788888888888999999987654  244556789999999999999998888888888765432 12222  223


Q ss_pred             CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeec-----------CCCCeEEEEEcCCCCEEEEEE--CCcEE
Q 004217          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-----------FYRPIASIAFHASGELLAVAS--GHKLY  215 (767)
Q Consensus       149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-----------h~~~VtsVafSPdG~~LAsgS--dd~V~  215 (767)
                      ......+.+.+ +++++++-+.++.+..+|...+.......           .......+.++  +..+..+.  .+.|+
T Consensus       112 ~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~  188 (302)
T d2p4oa1         112 AIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLL  188 (302)
T ss_dssp             CSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             ccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEE
Confidence            45678999999 88999998999999999998876443211           11234566665  44555554  34488


Q ss_pred             EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       216 VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      .++........... ..........++|+++|+.+++.
T Consensus       189 ~~~~~~~~~~~~~~-~~~~~~~pdgia~d~dG~l~va~  225 (302)
T d2p4oa1         189 RIPVDSTDKPGEPE-IFVEQTNIDDFAFDVEGNLYGAT  225 (302)
T ss_dssp             EEEBCTTSCBCCCE-EEEESCCCSSEEEBTTCCEEEEC
T ss_pred             eccccccccccccc-cccCCCCCcceEECCCCCEEEEE
Confidence            88887654433222 22234456789999999855443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.30  E-value=2.3e-06  Score=93.40  Aligned_cols=105  Identities=12%  Similarity=0.000  Sum_probs=78.8

Q ss_pred             CCCCeEEEEECCCCCeEEEEe-CCCeEEEEECCCCeEEEEEc-cCCCCcEEEEEccCCCc--EEEEEeCCC---------
Q 004217          106 PPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKVLH-GHRRTPWVVRFHPLNPT--IIASGSLDH---------  172 (767)
Q Consensus       106 H~~sVtsVaFSpDG~~LASgs-~DGtVrVWDl~tg~~l~~L~-gH~~~V~sLafsP~dg~--lLaSgS~DG---------  172 (767)
                      |........++|||++|+... .+..|.++|++++++...+. .+...+..++|+| +++  +++..+.+.         
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCcccc
Confidence            344456667789999996664 57899999999999887765 3567899999999 666  444444332         


Q ss_pred             --------eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC
Q 004217          173 --------EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG  211 (767)
Q Consensus       173 --------tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd  211 (767)
                              .+..+|..+.+....+........++|+|+|+++++++.
T Consensus       149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~  195 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCY  195 (441)
T ss_dssp             CCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEES
T ss_pred             cccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEec
Confidence                    235588888888777665667788999999999888863

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.21  E-value=1.9e-05  Score=82.88  Aligned_cols=146  Identities=13%  Similarity=0.063  Sum_probs=95.1

Q ss_pred             CeEEEEECCCCCeEEEEeC-CCeEEEEECCC-CeEE--EEE--ccCCCCcEEEEEccCCCcEE-EEEeCCCeEEEEECCC
Q 004217          109 STIAAAFSPDGKTLASTHG-DHTVKIIDCQT-GSCL--KVL--HGHRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNAST  181 (767)
Q Consensus       109 sVtsVaFSpDG~~LASgs~-DGtVrVWDl~t-g~~l--~~L--~gH~~~V~sLafsP~dg~lL-aSgS~DGtVrIWDl~t  181 (767)
                      .++++.|+|||++|+++.. ...|.+|+... ++..  ..+  .........+.|+| +++++ ++...+++|.+||+..
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEecC
Confidence            4789999999999888764 45788887654 3322  222  22345788999999 66655 5566789999999876


Q ss_pred             CeEE--Ee---ec---------------CCCCeEEEEEcCCCCEEEEEE--CCc-----EEEEEcCCCccccCCeEE---
Q 004217          182 AECI--GS---RD---------------FYRPIASIAFHASGELLAVAS--GHK-----LYIWRYNMREETSSPRIV---  231 (767)
Q Consensus       182 g~~i--~~---l~---------------h~~~VtsVafSPdG~~LAsgS--dd~-----V~VWDl~t~~~~~~~~~l---  231 (767)
                      ++..  ..   ..               .......+.++|+|++|+++.  ++.     |..|++.....+.....+   
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            5422  11   10               112356789999999998875  222     777777654332211111   


Q ss_pred             ecCCCCeEEEEEcc-CCCeEEEEEe
Q 004217          232 LRTRRSLRAVHFHP-HAAPLLLTAE  255 (767)
Q Consensus       232 ~~h~~~VtsVaFSP-DG~~LlaSgs  255 (767)
                      .......+.++|+| +|++|+++..
T Consensus       305 ~~~G~~p~~i~~~p~~G~~l~va~~  329 (365)
T d1jofa_         305 PTSGGHSNAVSPCPWSDEWMAITDD  329 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECS
T ss_pred             EcCCCCccEEEecCCCCCEEEEEeC
Confidence            12344567899998 8998888754

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=6.4e-05  Score=81.82  Aligned_cols=138  Identities=11%  Similarity=0.102  Sum_probs=96.1

Q ss_pred             EEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCC---CCcEEEEEccCCCcEEEEEe---------CCCeEEEEECC
Q 004217          113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR---RTPWVVRFHPLNPTIIASGS---------LDHEVRLWNAS  180 (767)
Q Consensus       113 VaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~---~~V~sLafsP~dg~lLaSgS---------~DGtVrIWDl~  180 (767)
                      ..|.+|+.++.. ..||.|.+||+.+++....+..+.   -.+....|+| |+++++...         ..+.+.++|+.
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Sp-D~~~vl~~~~~~~~~r~s~~~~~~i~d~~   99 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECC-CCCeEEEEEcccceeEeeccccEEEEEcc
Confidence            358888876653 557889999999887644443322   3567788999 788766653         35788999999


Q ss_pred             CCeEEEeec---CCCCeEEEEEcCCCCEEEEEECCcEEEEEcCCCccccCCeEEecCCC-----------------CeEE
Q 004217          181 TAECIGSRD---FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRR-----------------SLRA  240 (767)
Q Consensus       181 tg~~i~~l~---h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~t~~~~~~~~~l~~h~~-----------------~Vts  240 (767)
                      +++......   ....+....|||||+.||...++.|++.+...+...+  ....+...                 .-.+
T Consensus       100 ~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~--lt~~g~~~~i~nG~~d~vyeee~~~~~~a  177 (465)
T d1xfda1         100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIR--VVSTGKEGVIYNGLSDWLYEEEILKTHIA  177 (465)
T ss_dssp             SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEE--EECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred             CCceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEE--EecccCcceeeccccchhhhhhhccccce
Confidence            887655432   2345666889999999999998889999887765433  11111111                 1257


Q ss_pred             EEEccCCCeEEEEE
Q 004217          241 VHFHPHAAPLLLTA  254 (767)
Q Consensus       241 VaFSPDG~~LlaSg  254 (767)
                      +-|||||++|+...
T Consensus       178 ~~WSPDgk~iaf~~  191 (465)
T d1xfda1         178 HWWSPDGTRLAYAA  191 (465)
T ss_dssp             EEECTTSSEEEEEE
T ss_pred             EEECCCCCeEEEEE
Confidence            88999999988764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.04  E-value=0.00017  Score=71.43  Aligned_cols=176  Identities=9%  Similarity=-0.023  Sum_probs=116.1

Q ss_pred             EEEEEEcCCCEEEEEeCCCeEEEEeCCCCC-C--CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCC
Q 004217           73 IFEAGRDARRGLASWVEAESLHHLRPKYCP-L--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (767)
Q Consensus        73 ~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~-L--~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~  149 (767)
                      .-+++..++...++....+.+++++..... +  ........+++++++++++++-..+..+.+++............-.
T Consensus        60 ~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  139 (260)
T d1rwia_          60 QGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGL  139 (260)
T ss_dssp             CCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSC
T ss_pred             eEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeeccc
Confidence            335555667666666666667666554432 1  1223567899999999988877667778888765544222222223


Q ss_pred             CCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEECC-cEEEEEcCCCccccC
Q 004217          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSS  227 (767)
Q Consensus       150 ~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSdd-~V~VWDl~t~~~~~~  227 (767)
                      .....+++.+ +++++++...++.|..+|......... ...-.....++++++|+++++...+ +|..++........ 
T Consensus       140 ~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~-  217 (260)
T d1rwia_         140 NDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-  217 (260)
T ss_dssp             CSCCEEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEE-
T ss_pred             CCcceeeecC-CCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEE-
Confidence            4567899999 888888888899999999876544433 3445667899999999887776644 48878765443211 


Q ss_pred             CeEEecCCCCeEEEEEccCCCeEEE
Q 004217          228 PRIVLRTRRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       228 ~~~l~~h~~~VtsVaFSPDG~~Lla  252 (767)
                        .....-.....|+++++|..+++
T Consensus       218 --~~~~~~~~P~~i~~d~~g~l~va  240 (260)
T d1rwia_         218 --LPFTGLNTPLAVAVDSDRTVYVA  240 (260)
T ss_dssp             --CCCCSCCCEEEEEECTTCCEEEE
T ss_pred             --EccCCCCCeEEEEEeCCCCEEEE
Confidence              11122345789999999984443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=8.1e-05  Score=80.95  Aligned_cols=120  Identities=9%  Similarity=-0.004  Sum_probs=81.5

Q ss_pred             CCCeEEEEeCCCCC----CCC---CCCCeEEEEECCCCCeEEEEeC---------CCeEEEEECCCCeEEEEE--ccCCC
Q 004217           89 EAESLHHLRPKYCP----LSP---PPRSTIAAAFSPDGKTLASTHG---------DHTVKIIDCQTGSCLKVL--HGHRR  150 (767)
Q Consensus        89 ~DgsIrlWd~~t~~----L~g---H~~sVtsVaFSpDG~~LASgs~---------DGtVrVWDl~tg~~l~~L--~gH~~  150 (767)
                      .++.|.+||+.+++    +..   ..-.+....||||+++|+....         .+.+.|+|+.+++.....  .....
T Consensus        35 ~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~  114 (465)
T d1xfda1          35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA  114 (465)
T ss_dssp             SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred             CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCcc
Confidence            45667777776652    111   2235778899999999887643         578899999988754322  22334


Q ss_pred             CcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecC--CC-----------------CeEEEEEcCCCCEEEEEE
Q 004217          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF--YR-----------------PIASIAFHASGELLAVAS  210 (767)
Q Consensus       151 ~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h--~~-----------------~VtsVafSPdG~~LAsgS  210 (767)
                      .+....|+| +++.++... ++.|.+.+..++..++....  ..                 .-..+-|||||++||...
T Consensus       115 ~l~~~~wSP-DG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         115 KLQYAGWGP-KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             CCSBCCBCS-STTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             ccceeeecc-CCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            566688999 788777765 67888888887766554321  11                 124677999999999875

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.97  E-value=0.00044  Score=72.17  Aligned_cols=148  Identities=14%  Similarity=0.059  Sum_probs=89.7

Q ss_pred             CCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC-CeEEEEE-ccCCCCcEEEEEccCCCcEE--EEEe-CCCeEEEEECC
Q 004217          106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-GSCLKVL-HGHRRTPWVVRFHPLNPTII--ASGS-LDHEVRLWNAS  180 (767)
Q Consensus       106 H~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t-g~~l~~L-~gH~~~V~sLafsP~dg~lL--aSgS-~DGtVrIWDl~  180 (767)
                      ....+.-|+|++|+++|+++.. +.+..|.+.. +...... .........+.+++ +++.+  ++.. ..++|..+.+.
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~  115 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEcc
Confidence            4445677999999999988765 4677777653 3322221 22234466778888 66532  2222 23455544432


Q ss_pred             C-------------CeE---EEe--ecCCCCeEEEEEcCCCCEEEEEEC--CcEEEEEcCCCccccCCeE--EecCCCCe
Q 004217          181 T-------------AEC---IGS--RDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRI--VLRTRRSL  238 (767)
Q Consensus       181 t-------------g~~---i~~--l~h~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~t~~~~~~~~~--l~~h~~~V  238 (767)
                      .             ++.   ...  ......+.++.|+|+|++++++..  +.|.+|+......+.....  ........
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP  195 (365)
T d1jofa_         116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence            1             111   111  123345789999999999998884  4598988765432221111  12235678


Q ss_pred             EEEEEccCCCeEEEEEe
Q 004217          239 RAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       239 tsVaFSPDG~~LlaSgs  255 (767)
                      +.++|+||++++.++.+
T Consensus       196 r~i~f~pdg~~~yv~~e  212 (365)
T d1jofa_         196 RWVAMHPTGNYLYALME  212 (365)
T ss_dssp             EEEEECTTSSEEEEEET
T ss_pred             EEEEECCCCceEEEecc
Confidence            99999999998877765

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.95  E-value=0.00022  Score=69.10  Aligned_cols=94  Identities=18%  Similarity=0.237  Sum_probs=69.1

Q ss_pred             EECCC--CCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeC-C-----CeEEEEECCCCeEE
Q 004217          114 AFSPD--GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-D-----HEVRLWNASTAECI  185 (767)
Q Consensus       114 aFSpD--G~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~-D-----GtVrIWDl~tg~~i  185 (767)
                      ..|||  |++++..+ ++.|.+.|+.+++. +.|..+.+.+...+|+| |++.|+.... +     ..|.+++..+++..
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            45788  99998765 45789999998875 45666777889999999 8887775432 2     24777888888776


Q ss_pred             EeecC-------CCCeEEEEEcCCCCEEEEEE
Q 004217          186 GSRDF-------YRPIASIAFHASGELLAVAS  210 (767)
Q Consensus       186 ~~l~h-------~~~VtsVafSPdG~~LAsgS  210 (767)
                      .....       ........|+|+|+.|+...
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            55322       23456789999999988775

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.92  E-value=0.00039  Score=69.37  Aligned_cols=149  Identities=14%  Similarity=0.172  Sum_probs=108.7

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEc
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~-----L~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~  146 (767)
                      ...++...++..++.....+.+.+++.....     ...+......+++.++++.+++....+.|++||. +|+.+.++.
T Consensus       116 p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g  194 (279)
T d1q7fa_         116 PRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIG  194 (279)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEES
T ss_pred             cceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccceeeeec-CCceeeeec
Confidence            4445565666666666666777777765431     2356677899999999999888888999999996 467677773


Q ss_pred             --cCCCCcEEEEEccCCCcEEEEEeC-CCeEEEEECCCCeEEEeec---CCCCeEEEEEcCCCCEEEEEECCcEEEEEcC
Q 004217          147 --GHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVASGHKLYIWRYN  220 (767)
Q Consensus       147 --gH~~~V~sLafsP~dg~lLaSgS~-DGtVrIWDl~tg~~i~~l~---h~~~VtsVafSPdG~~LAsgSdd~V~VWDl~  220 (767)
                        +.......|++.+ +++++++-.. ++.|.+|+ .+++.+..+.   .......|++.++|+++++..+++|++|...
T Consensus       195 ~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~  272 (279)
T d1q7fa_         195 GEGITNYPIGVGINS-NGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYV  272 (279)
T ss_dssp             CTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECS
T ss_pred             ccccccCCccccccc-CCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEee
Confidence              3455678999999 7888877554 45799998 4677766653   2346789999999987665545569999887


Q ss_pred             CCc
Q 004217          221 MRE  223 (767)
Q Consensus       221 t~~  223 (767)
                      +..
T Consensus       273 ~~~  275 (279)
T d1q7fa_         273 QLA  275 (279)
T ss_dssp             CCC
T ss_pred             eec
Confidence            654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.81  E-value=0.00089  Score=68.46  Aligned_cols=177  Identities=10%  Similarity=0.059  Sum_probs=113.4

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC--CC-----CC-CCCeEEEEECCCCCeEEEEeC---------------C
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP--LS-----PP-PRSTIAAAFSPDGKTLASTHG---------------D  128 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~--L~-----gH-~~sVtsVaFSpDG~~LASgs~---------------D  128 (767)
                      +.-+++..++..++.......|...+.+...  +.     +. -...++++|.++|++.++-..               +
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            3446666677777777777778888876541  11     11 123688999999988776432               2


Q ss_pred             CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCc-----EEEEEeCCCeEEEEECCCCeEEEe------ec--CCCCeE
Q 004217          129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT-----IIASGSLDHEVRLWNASTAECIGS------RD--FYRPIA  195 (767)
Q Consensus       129 GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~-----lLaSgS~DGtVrIWDl~tg~~i~~------l~--h~~~Vt  195 (767)
                      |.|..++.+ ++..... ..-...+.++|+| +++     ++++-+..+.|..||+.....+..      +.  ......
T Consensus       153 G~v~~~~~d-g~~~~~~-~~~~~pNGi~~~~-d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd  229 (314)
T d1pjxa_         153 GSIYCFTTD-GQMIQVD-TAFQFPNGIAVRH-MNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             EEEEEECTT-SCEEEEE-EEESSEEEEEEEE-CTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             ceEEEEeec-CceeEee-CCcceeeeeEECC-CCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccce
Confidence            345555533 4433332 2334457899998 443     666667888999998764322221      11  122356


Q ss_pred             EEEEcCCCCEEEEEE-CCcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          196 SIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       196 sVafSPdG~~LAsgS-dd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      .++++.+|++.++.. .+.|.+||.+.+....   .+.......++++|.||++.|.++.
T Consensus       230 GiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~---~i~~p~~~~t~~afg~d~~~lyVt~  286 (314)
T d1pjxa_         230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKM---RIRCPFEKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBSCSE---EEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             eeEEecCCcEEEEEcCCCEEEEEeCCCCEEEE---EEECCCCCEEEEEEeCCCCEEEEEE
Confidence            799999999766655 4559999987765422   3444456789999999998776664

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.78  E-value=0.00043  Score=68.37  Aligned_cols=176  Identities=9%  Similarity=-0.016  Sum_probs=112.6

Q ss_pred             ceEEEEEEcCCCEEE-EEeCCCeEEEEeCCCCC---C-CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE
Q 004217           71 SQIFEAGRDARRGLA-SWVEAESLHHLRPKYCP---L-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (767)
Q Consensus        71 s~~~vA~sd~g~~La-Sgs~DgsIrlWd~~t~~---L-~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L  145 (767)
                      ++.-+++..++...+ .....+.+..++.....   + .+-......++++++|+++++....+.+++++-.++..+..+
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~   94 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF   94 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee
Confidence            356667766666444 34556777777665431   1 111234578899999998888777777777765555544333


Q ss_pred             ccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe-ecCCCCeEEEEEcCCCCEEEEEEC-CcEEEEEcCCCc
Q 004217          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMRE  223 (767)
Q Consensus       146 ~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~-l~h~~~VtsVafSPdG~~LAsgSd-d~V~VWDl~t~~  223 (767)
                      . ....+..+++.+ +++++++-..+..+..++......... .........++++++|+++++... +.|..+|.....
T Consensus        95 ~-~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~  172 (260)
T d1rwia_          95 D-GLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  172 (260)
T ss_dssp             C-SCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             e-eeeecccccccc-cceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccce
Confidence            2 235678999999 888888877777788887765443322 223345578999999997766554 449999877654


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEE
Q 004217          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (767)
Q Consensus       224 ~~~~~~~l~~h~~~VtsVaFSPDG~~Ll  251 (767)
                      ...   ...........|+++++|+.++
T Consensus       173 ~~~---~~~~~~~~p~gi~~d~~g~l~v  197 (260)
T d1rwia_         173 QVV---LPFTDITAPWGIAVDEAGTVYV  197 (260)
T ss_dssp             EEE---CCCSSCCSEEEEEECTTCCEEE
T ss_pred             eee---eeccccCCCccceeeeeeeeee
Confidence            322   1223445678999999998433

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.73  E-value=0.001  Score=66.86  Aligned_cols=179  Identities=12%  Similarity=-0.030  Sum_probs=120.2

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCC-----C--CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEE
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP-----L--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV  144 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~-----L--~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~  144 (767)
                      ...+++..++..+++...++.+..|+.....     +  .........+++.++|+++++-+.++.+..+|..++.....
T Consensus        70 ~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~  149 (302)
T d2p4oa1          70 VSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIW  149 (302)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeE
Confidence            5567778888888888888888877765431     1  13445689999999999999888899999999888764332


Q ss_pred             Ecc--------C--CCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe---ecCCCCeEEEEEcCCCCEEEEEE-
Q 004217          145 LHG--------H--RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS---RDFYRPIASIAFHASGELLAVAS-  210 (767)
Q Consensus       145 L~g--------H--~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~---l~h~~~VtsVafSPdG~~LAsgS-  210 (767)
                      +..        +  ...+..+.+..  ..++++.+.++.|..+++........   .........++|+++|+++++.. 
T Consensus       150 ~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~  227 (302)
T d2p4oa1         150 LEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI  227 (302)
T ss_dssp             EECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT
T ss_pred             ecCCccceeeccCcccccccccccC--CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC
Confidence            211        1  12345666654  56777778889999998876443222   22334456799999999766665 


Q ss_pred             CCcEEEEEcCCCccccCCeEEecCCCCeEEEEE---ccCCCeEEEEE
Q 004217          211 GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHF---HPHAAPLLLTA  254 (767)
Q Consensus       211 dd~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaF---SPDG~~LlaSg  254 (767)
                      +++|..++........  ......-...++++|   ++|++.|.++.
T Consensus       228 ~~~V~~i~p~G~~~~~--~~~~~~~~~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         228 YNSVVRIAPDRSTTII--AQAEQGVIGSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             TCCEEEECTTCCEEEE--ECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             CCcEEEECCCCCEEEE--EecCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence            4558888765432211  111223456899999   77888776654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.73  E-value=8.3e-05  Score=80.80  Aligned_cols=129  Identities=7%  Similarity=-0.051  Sum_probs=88.1

Q ss_pred             EEEEeCCCeEEEEECCCCeEEEEEc------------------------------cCCCCcEEEEEccCCCcEEE-EEeC
Q 004217          122 LASTHGDHTVKIIDCQTGSCLKVLH------------------------------GHRRTPWVVRFHPLNPTIIA-SGSL  170 (767)
Q Consensus       122 LASgs~DGtVrVWDl~tg~~l~~L~------------------------------gH~~~V~sLafsP~dg~lLa-SgS~  170 (767)
                      ++|++.+|.|+|||+.+++.++++.                              .|........+.| |+++|+ +...
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp-DGr~lfV~d~~   92 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY-DGKYLFINDKA   92 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE-EEEEEEEEETT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC-CCCEEEEEcCC
Confidence            4455566677777766666665542                              1222334444568 677664 4557


Q ss_pred             CCeEEEEECCCCeEEEee--cCCCCeEEEEEcCCCC--EEEEEECCcE------------------EEEEcCCCccccCC
Q 004217          171 DHEVRLWNASTAECIGSR--DFYRPIASIAFHASGE--LLAVASGHKL------------------YIWRYNMREETSSP  228 (767)
Q Consensus       171 DGtVrIWDl~tg~~i~~l--~h~~~VtsVafSPdG~--~LAsgSdd~V------------------~VWDl~t~~~~~~~  228 (767)
                      +++|.++|+.++++...+  .+...+..++|+|+|+  |++..+.+.+                  ..+|..+.+...  
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~--  170 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW--  170 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE--
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE--
Confidence            889999999999987764  4678899999999998  6666555544                  457777766543  


Q ss_pred             eEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          229 RIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       229 ~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                       .+. .......+.|+|||+++++++.
T Consensus       171 -qI~-v~~~p~~v~~spdGk~a~vt~~  195 (441)
T d1qnia2         171 -QVI-VDGNLDNTDADYTGKYATSTCY  195 (441)
T ss_dssp             -EEE-ESSCCCCEEECSSSSEEEEEES
T ss_pred             -EEe-cCCCccceEECCCCCEEEEEec
Confidence             222 2346789999999999888774

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.65  E-value=0.0021  Score=63.82  Aligned_cols=158  Identities=14%  Similarity=0.158  Sum_probs=111.0

Q ss_pred             eCCCeEEEEeCCCCC---C-CCCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEE--ccCCCCcEEEEEccCC
Q 004217           88 VEAESLHHLRPKYCP---L-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL--HGHRRTPWVVRFHPLN  161 (767)
Q Consensus        88 s~DgsIrlWd~~t~~---L-~gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L--~gH~~~V~sLafsP~d  161 (767)
                      ..++.|..++.....   + .........+++.++|+++++....+.+.+++. +++.+..+  ..+......+++.+ +
T Consensus        90 ~~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~-~  167 (279)
T d1q7fa_          90 SPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVND-K  167 (279)
T ss_dssp             GGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECS-S
T ss_pred             CCccccccccccccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeecc-c
Confidence            345567777664331   1 234556789999999998888888888999885 46666665  34556778899998 8


Q ss_pred             CcEEEEEeCCCeEEEEECCCCeEEEeec---CCCCeEEEEEcCCCCEEEEEE-CC-cEEEEEcCCCccccCCeEEe--cC
Q 004217          162 PTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVAS-GH-KLYIWRYNMREETSSPRIVL--RT  234 (767)
Q Consensus       162 g~lLaSgS~DGtVrIWDl~tg~~i~~l~---h~~~VtsVafSPdG~~LAsgS-dd-~V~VWDl~t~~~~~~~~~l~--~h  234 (767)
                      ++++++....+.|++||.. ++.+..+.   .......|+++++|+++++-. ++ .|.+|+.. ++.+.   .+.  ..
T Consensus       168 g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~---~~~~~~~  242 (279)
T d1q7fa_         168 QEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLIS---ALESKVK  242 (279)
T ss_dssp             SEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEE---EEEESSC
T ss_pred             eeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEEE---EEeCCCC
Confidence            8899998999999999974 56666664   334578999999999776654 33 39999843 44322   222  22


Q ss_pred             CCCeEEEEEccCCCeEEEE
Q 004217          235 RRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       235 ~~~VtsVaFSPDG~~LlaS  253 (767)
                      ......|++.|||. |+++
T Consensus       243 ~~~p~~vav~~dG~-l~V~  260 (279)
T d1q7fa_         243 HAQCFDVALMDDGS-VVLA  260 (279)
T ss_dssp             CSCEEEEEEETTTE-EEEE
T ss_pred             CCCEeEEEEeCCCc-EEEE
Confidence            34578999999997 4444

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.58  E-value=0.013  Score=59.38  Aligned_cols=162  Identities=9%  Similarity=0.029  Sum_probs=97.2

Q ss_pred             CCeEEEEeCCCCCCC--------CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCC----CcEEEEE
Q 004217           90 AESLHHLRPKYCPLS--------PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR----TPWVVRF  157 (767)
Q Consensus        90 DgsIrlWd~~t~~L~--------gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~----~V~sLaf  157 (767)
                      +++|..||..+++..        .-.+.-..++|+++|+.|+++...+.|..+|.+.+..........+    ..+.+.+
T Consensus        45 ~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~  124 (314)
T d1pjxa_          45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAF  124 (314)
T ss_dssp             CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEE
T ss_pred             CCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEE
Confidence            467888888776311        1122356899999999888888777899999776543221111111    3578999


Q ss_pred             ccCCCcEEEEEeC---------------CCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCC----EEEEEE--CCcEEE
Q 004217          158 HPLNPTIIASGSL---------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGE----LLAVAS--GHKLYI  216 (767)
Q Consensus       158 sP~dg~lLaSgS~---------------DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~----~LAsgS--dd~V~V  216 (767)
                      .+ ++++.++-..               +|.|..++. .++.......-...+.++|+|++.    +|.++.  .+.|..
T Consensus       125 d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~  202 (314)
T d1pjxa_         125 DY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWS  202 (314)
T ss_dssp             CT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEE
T ss_pred             CC-CCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEE
Confidence            99 8888887432               234444443 334433333334457899998875    565554  344888


Q ss_pred             EEcCCCccccCCeEEec----CCCCeEEEEEccCCCeEEEE
Q 004217          217 WRYNMREETSSPRIVLR----TRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       217 WDl~t~~~~~~~~~l~~----h~~~VtsVaFSPDG~~LlaS  253 (767)
                      ||+.....+........    .......+++..+|+.+++.
T Consensus       203 ~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~  243 (314)
T d1pjxa_         203 YDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             EEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred             eeccCccccceeeEEEEccccccccceeeEEecCCcEEEEE
Confidence            88765433221111111    12235689999999955543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.58  E-value=0.0032  Score=60.50  Aligned_cols=86  Identities=19%  Similarity=0.187  Sum_probs=58.7

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCeEEEEeC-C-----CeEEEEECCCCeEEEEEc-----
Q 004217           81 RRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG-D-----HTVKIIDCQTGSCLKVLH-----  146 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t~---~L~gH~~sVtsVaFSpDG~~LASgs~-D-----GtVrVWDl~tg~~l~~L~-----  146 (767)
                      |+.++-. .++.|.+.|+..+   +|..+.+.+...+|||||++||.... +     ..|.+++..+++......     
T Consensus        12 G~~v~f~-~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~   90 (281)
T d1k32a2          12 GDRIIFV-CCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKS   90 (281)
T ss_dssp             TTEEEEE-ETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEE
T ss_pred             CCEEEEE-eCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCc
Confidence            5555433 3556888888876   46677788999999999999986643 1     247888888887543211     


Q ss_pred             -cCCCCcEEEEEccCCCcEEEEE
Q 004217          147 -GHRRTPWVVRFHPLNPTIIASG  168 (767)
Q Consensus       147 -gH~~~V~sLafsP~dg~lLaSg  168 (767)
                       ..........|+| +++.++..
T Consensus        91 ~~~~~~~~~~~~sp-dg~~l~~~  112 (281)
T d1k32a2          91 TGRRMFTDVAGFDP-DGNLIIST  112 (281)
T ss_dssp             ETTEECSEEEEECT-TCCEEEEE
T ss_pred             cCccccccccccCC-CCCEEEEE
Confidence             1223456788999 77777664

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.52  E-value=0.005  Score=62.57  Aligned_cols=178  Identities=9%  Similarity=-0.018  Sum_probs=109.0

Q ss_pred             EEEEcCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEEeCC----CeEEEEECCCCeEEEEEc
Q 004217           75 EAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGD----HTVKIIDCQTGSCLKVLH  146 (767)
Q Consensus        75 vA~sd~g~~LaSgs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASgs~D----GtVrVWDl~tg~~l~~L~  146 (767)
                      .++..++...++-...++|..|+.+...    +.........++|++||+++++...+    +.|...+..++.......
T Consensus        45 ~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~  124 (319)
T d2dg1a1          45 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE  124 (319)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred             CEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeecc
Confidence            4454556666666678888888887653    22445568899999999988776432    345555555555443333


Q ss_pred             cC--CCCcEEEEEccCCCcEEEEEeC------CCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE--CCcEEE
Q 004217          147 GH--RRTPWVVRFHPLNPTIIASGSL------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYI  216 (767)
Q Consensus       147 gH--~~~V~sLafsP~dg~lLaSgS~------DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS--dd~V~V  216 (767)
                      ..  ...+..+.+.+ +++++++...      .+.+..++...+........-...+.++|+|+++.|..+.  .++|+.
T Consensus       125 ~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~  203 (319)
T d2dg1a1         125 DLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHR  203 (319)
T ss_dssp             SSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             CCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEE
Confidence            21  23467899999 8887777432      1335555554443333333334567899999999776665  355999


Q ss_pred             EEcCCCccccCCe-----EEecCCCCeEEEEEccCCCeEEEE
Q 004217          217 WRYNMREETSSPR-----IVLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       217 WDl~t~~~~~~~~-----~l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      ||+..........     ...........+++..+|+.+++.
T Consensus       204 ~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~  245 (319)
T d2dg1a1         204 IALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM  245 (319)
T ss_dssp             EEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE
T ss_pred             EEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEE
Confidence            9987543211000     011112335689999999955544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.36  E-value=0.005  Score=62.55  Aligned_cols=141  Identities=11%  Similarity=0.108  Sum_probs=96.2

Q ss_pred             CeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCC----CeEEEEECCCCeE
Q 004217          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD----HEVRLWNASTAEC  184 (767)
Q Consensus       109 sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~D----GtVrIWDl~tg~~  184 (767)
                      .+..++|.++|++.++-..++.|..||.++++....+.........++|++ +++++++...+    +.+...|......
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCcee
Confidence            456899999999777777889999999888776666655666789999999 88888775432    3455556665554


Q ss_pred             EEeec---CCCCeEEEEEcCCCCEEEEEECC-------cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          185 IGSRD---FYRPIASIAFHASGELLAVASGH-------KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       185 i~~l~---h~~~VtsVafSPdG~~LAsgSdd-------~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      .....   .....+.++++++|++.++...+       .+..++...... .   .+...-...+.++|+||++.|..+-
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~-~---~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-T---PIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-E---EEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee-E---EEeeccceeeeeeeccccceEEEec
Confidence            44433   23457889999999977765432       155554443321 1   2223334567899999999776654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.24  E-value=0.015  Score=58.44  Aligned_cols=169  Identities=13%  Similarity=0.039  Sum_probs=107.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC--CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEEEEccC----CCCcEE
Q 004217           81 RRGLASWVEAESLHHLRPKYCPLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH----RRTPWV  154 (767)
Q Consensus        81 g~~LaSgs~DgsIrlWd~~t~~L~--gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~~L~gH----~~~V~s  154 (767)
                      +...++=...+.|..||.++++..  .....+.++++.++|+++++ +.+ -+.++|..+++........    ...++.
T Consensus        30 ~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd  107 (295)
T d2ghsa1          30 GTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSND  107 (295)
T ss_dssp             TEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEE
T ss_pred             CEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCccccee
Confidence            333333345566666766655321  23456889999999877765 444 5888999988754333211    124778


Q ss_pred             EEEccCCCcEEEEEeC----CCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC--CcEEEEEcCCCccc--c
Q 004217          155 VRFHPLNPTIIASGSL----DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREET--S  226 (767)
Q Consensus       155 LafsP~dg~lLaSgS~----DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~t~~~~--~  226 (767)
                      +.+.| ++++.++...    .+.-.+|.+..++.......-...+.++|+++++.+..+..  +.|+.|++......  .
T Consensus       108 ~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~  186 (295)
T d2ghsa1         108 GRMHP-SGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG  186 (295)
T ss_dssp             EEECT-TSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS
T ss_pred             eEECC-CCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeeccccccccc
Confidence            89999 7887776543    23456777777776655554456678999999997766653  44988887543221  1


Q ss_pred             CCeEEe---cCCCCeEEEEEccCCCeEEE
Q 004217          227 SPRIVL---RTRRSLRAVHFHPHAAPLLL  252 (767)
Q Consensus       227 ~~~~l~---~h~~~VtsVaFSPDG~~Lla  252 (767)
                      ....+.   +.......+++..+|+..++
T Consensus       187 ~~~~~~~~~~~~g~pdG~~vD~~GnlWva  215 (295)
T d2ghsa1         187 KAEVFIDSTGIKGGMDGSVCDAEGHIWNA  215 (295)
T ss_dssp             CCEEEEECTTSSSEEEEEEECTTSCEEEE
T ss_pred             ceEEEeccCcccccccceEEcCCCCEEee
Confidence            111211   23445788999999985554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.15  E-value=0.028  Score=56.35  Aligned_cols=177  Identities=14%  Similarity=0.080  Sum_probs=113.4

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCCCCCC------C--CCCCeEEEEECCCCCeEEEEeC----CCeEEEEECCCC
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPLS------P--PPRSTIAAAFSPDGKTLASTHG----DHTVKIIDCQTG  139 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t~~L~------g--H~~sVtsVaFSpDG~~LASgs~----DGtVrVWDl~tg  139 (767)
                      ...++..+++..++ ++.+ .|.++|..++++.      .  ....++++.+.++|++.++...    .+.-.+|.+..+
T Consensus        61 ~~~i~~~~dg~l~v-a~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g  138 (295)
T d2ghsa1          61 GSALAKISDSKQLI-ASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG  138 (295)
T ss_dssp             EEEEEEEETTEEEE-EETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT
T ss_pred             cEEEEEecCCCEEE-EEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCC
Confidence            44455556665555 4444 5888898877422      1  1224789999999987766543    234567777777


Q ss_pred             eEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCe------EEEee---cCCCCeEEEEEcCCCCEEEEEE
Q 004217          140 SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE------CIGSR---DFYRPIASIAFHASGELLAVAS  210 (767)
Q Consensus       140 ~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~------~i~~l---~h~~~VtsVafSPdG~~LAsgS  210 (767)
                      +....+.. -.....+.|++++..++++-+..+.|..+++....      .....   ........++++.+|++.++.-
T Consensus       139 ~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~  217 (295)
T d2ghsa1         139 KVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW  217 (295)
T ss_dssp             EEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE
T ss_pred             cEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeee
Confidence            65554443 33467899999444466777778899999875311      11111   2344578899999999776665


Q ss_pred             C-CcEEEEEcCCCccccCCeEEecCCCCeEEEEEc-cCCCeEEEEEe
Q 004217          211 G-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFH-PHAAPLLLTAE  255 (767)
Q Consensus       211 d-d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFS-PDG~~LlaSgs  255 (767)
                      . ++|..||. .++.+.   .+.-....+++++|- +|.+.|++|+.
T Consensus       218 ~~g~V~~~dp-~G~~~~---~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         218 GEGAVDRYDT-DGNHIA---RYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             TTTEEEEECT-TCCEEE---EEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             CCCceEEecC-CCcEee---EecCCCCceEEEEEeCCCCCEEEEEEC
Confidence            4 55999995 455433   333334578999996 78787777654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.74  E-value=0.39  Score=47.02  Aligned_cols=161  Identities=12%  Similarity=0.040  Sum_probs=104.9

Q ss_pred             CCeEEEEeCCCCC---------CCCCCCCeEEEEECCCCCeEEEE-eCCCeEEEEECCCCeEEEEEccCCCCcEEEEEcc
Q 004217           90 AESLHHLRPKYCP---------LSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP  159 (767)
Q Consensus        90 DgsIrlWd~~t~~---------L~gH~~sVtsVaFSpDG~~LASg-s~DGtVrVWDl~tg~~l~~L~gH~~~V~sLafsP  159 (767)
                      .+.|+-.+++...         +..+...+.+++|....+.|.-. ..++.|+..++..+.....+......+..+++..
T Consensus         9 ~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~   88 (263)
T d1npea_           9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDH   88 (263)
T ss_dssp             EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEET
T ss_pred             CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEec
Confidence            3466666654432         22334457789999876666555 4568899999887665555544446788999987


Q ss_pred             CCCcEEEEEeCCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEECC--cEEEE--EcCCCccccCCeEEecC
Q 004217          160 LNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH--KLYIW--RYNMREETSSPRIVLRT  234 (767)
Q Consensus       160 ~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSdd--~V~VW--Dl~t~~~~~~~~~l~~h  234 (767)
                      .++++.++-...+.|.+.++....+...+. .......++++|...+|.....+  ..+||  ++.......   .....
T Consensus        89 ~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~---i~~~~  165 (263)
T d1npea_          89 LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI---LAQDN  165 (263)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE---EECTT
T ss_pred             cCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee---eeeec
Confidence            466677777778899999998665544333 23678899999988877766533  23444  554433211   22233


Q ss_pred             CCCeEEEEEccCCCeEEEE
Q 004217          235 RRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       235 ~~~VtsVaFSPDG~~LlaS  253 (767)
                      -....++++++.++.|..+
T Consensus       166 ~~~P~glaiD~~~~~lYw~  184 (263)
T d1npea_         166 LGLPNGLTFDAFSSQLCWV  184 (263)
T ss_dssp             CSCEEEEEEETTTTEEEEE
T ss_pred             ccccceEEEeecCcEEEEE
Confidence            4566899999888877665

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=1.2  Score=43.18  Aligned_cols=161  Identities=9%  Similarity=0.001  Sum_probs=103.5

Q ss_pred             CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCeEEEEe-CCCeEEEEECCCCe----EEEEEccCCCCcEEEEEccCC
Q 004217           90 AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGS----CLKVLHGHRRTPWVVRFHPLN  161 (767)
Q Consensus        90 DgsIrlWd~~t~~---L~gH~~sVtsVaFSpDG~~LASgs-~DGtVrVWDl~tg~----~l~~L~gH~~~V~sLafsP~d  161 (767)
                      ...|+..++.+..   +......+.+++|++..+.|.-.. .++.|+..++....    ....+......+..+++.+.+
T Consensus         9 ~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~   88 (266)
T d1ijqa1           9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (266)
T ss_dssp             BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CCeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence            3457777776542   334456788999999777776554 46677777765321    122233334557788888766


Q ss_pred             CcEEEEEeCCCeEEEEECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEECC---cEEEEEcCCCccccCCeEEecCCCC
Q 004217          162 PTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH---KLYIWRYNMREETSSPRIVLRTRRS  237 (767)
Q Consensus       162 g~lLaSgS~DGtVrIWDl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSdd---~V~VWDl~t~~~~~~~~~l~~h~~~  237 (767)
                      +++..+-...++|.+.++......... ........++++|...+|.....+   +|.-.++.......   .....-..
T Consensus        89 ~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~---l~~~~~~~  165 (266)
T d1ijqa1          89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVTENIQW  165 (266)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE---EECSSCSC
T ss_pred             ceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceec---ccccccce
Confidence            778887778889999999876654443 345678899999977666655422   36666666544322   22233456


Q ss_pred             eEEEEEccCCCeEEEE
Q 004217          238 LRAVHFHPHAAPLLLT  253 (767)
Q Consensus       238 VtsVaFSPDG~~LlaS  253 (767)
                      ...+++++.++.|..+
T Consensus       166 p~gl~iD~~~~~lYw~  181 (266)
T d1ijqa1         166 PNGITLDLLSGRLYWV  181 (266)
T ss_dssp             EEEEEEETTTTEEEEE
T ss_pred             eeEEEeeccccEEEEe
Confidence            7899999988877765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.56  E-value=0.28  Score=52.13  Aligned_cols=143  Identities=11%  Similarity=0.086  Sum_probs=93.6

Q ss_pred             EEEECC---CCCeEEEEe-CCCeEEEEECCCCeEEEEEcc-CCCCcEEEEEccC-CCcEEEEEeCC--------------
Q 004217          112 AAAFSP---DGKTLASTH-GDHTVKIIDCQTGSCLKVLHG-HRRTPWVVRFHPL-NPTIIASGSLD--------------  171 (767)
Q Consensus       112 sVaFSp---DG~~LASgs-~DGtVrVWDl~tg~~l~~L~g-H~~~V~sLafsP~-dg~lLaSgS~D--------------  171 (767)
                      .+.|..   ||++|+... .+..|-+.|+++.++.+.+.- ....+..++..++ +..+++..+.+              
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455544   789988776 478999999999998665543 2345566665431 55577766653              


Q ss_pred             ----CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECC-----------------------------------
Q 004217          172 ----HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-----------------------------------  212 (767)
Q Consensus       172 ----GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd-----------------------------------  212 (767)
                          +.+..+|..+.+......-......++++++|+++++.+.+                                   
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence                23678899998888776655667789999999999887622                                   


Q ss_pred             ----cEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004217          213 ----KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       213 ----~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSgs  255 (767)
                          ++.+-|.+..... .......-......+.++|||++++++++
T Consensus       249 ~eingV~VVD~~~~~~~-~v~~yIPVpKsPHGV~vSPDGKyi~VaGK  294 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASS-LFTRYIPIANNPHGCNMAPDKKHLCVAGK  294 (459)
T ss_dssp             EEETTEEEEECSGG--C-SSEEEEEEESSCCCEEECTTSSEEEEECT
T ss_pred             EEeCCceeecccccCCc-ceeEEEecCCCCCceEECCCCCEEEEeCC
Confidence                1334443321110 11122222344568899999999999876

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.09  E-value=3.1  Score=40.92  Aligned_cols=130  Identities=8%  Similarity=0.041  Sum_probs=79.1

Q ss_pred             EEEEeCCCCCCC-------CCCCCeEEEEECCCCCeEEEEeCC-CeEEEEECCCCeEEEEEccC-CCCcEEEEEccCCCc
Q 004217           93 LHHLRPKYCPLS-------PPPRSTIAAAFSPDGKTLASTHGD-HTVKIIDCQTGSCLKVLHGH-RRTPWVVRFHPLNPT  163 (767)
Q Consensus        93 IrlWd~~t~~L~-------gH~~sVtsVaFSpDG~~LASgs~D-GtVrVWDl~tg~~l~~L~gH-~~~V~sLafsP~dg~  163 (767)
                      +.+||..+++..       .|.......++.+||++++.|+.+ ..+.+||..+..-...-... ...-...+..+ +++
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~  132 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGR  132 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSC
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCc
Confidence            678999887422       344445677899999999988765 58999999887643221111 12223456667 788


Q ss_pred             EEEEEeCC------CeEEEEECCCCeEEEeec----------C-----CCCeEEEEEcCCCCEEEEEECCc-EEEEEcCC
Q 004217          164 IIASGSLD------HEVRLWNASTAECIGSRD----------F-----YRPIASIAFHASGELLAVASGHK-LYIWRYNM  221 (767)
Q Consensus       164 lLaSgS~D------GtVrIWDl~tg~~i~~l~----------h-----~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t  221 (767)
                      +++.|+.+      ..+.+||..+.+....-.          +     ......+...++|+.+..+.... +.++|..+
T Consensus       133 v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~  212 (387)
T d1k3ia3         133 VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS  212 (387)
T ss_dssp             EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTT
T ss_pred             eeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCccc
Confidence            88888753      468999999876543211          0     00111123345677666655333 66666655


Q ss_pred             Cc
Q 004217          222 RE  223 (767)
Q Consensus       222 ~~  223 (767)
                      ..
T Consensus       213 ~~  214 (387)
T d1k3ia3         213 GD  214 (387)
T ss_dssp             CE
T ss_pred             Cc
Confidence            43

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.31  E-value=0.38  Score=47.95  Aligned_cols=112  Identities=18%  Similarity=0.172  Sum_probs=74.0

Q ss_pred             EEEEECCCCCeEEEEeCC-----------CeEEEEECCCCeEE--EEE-ccCCCCcEEEEEccCCCcEEEEEeCC-CeEE
Q 004217          111 IAAAFSPDGKTLASTHGD-----------HTVKIIDCQTGSCL--KVL-HGHRRTPWVVRFHPLNPTIIASGSLD-HEVR  175 (767)
Q Consensus       111 tsVaFSpDG~~LASgs~D-----------GtVrVWDl~tg~~l--~~L-~gH~~~V~sLafsP~dg~lLaSgS~D-GtVr  175 (767)
                      .......||+.++.|+.+           ..+.+||..+++-.  ..+ ..|........+.+ ++.+++.|+.+ .++.
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec-CCcEEEeecCCCccee
Confidence            344444567777766642           13779999887532  122 23434445677888 88999888765 6899


Q ss_pred             EEECCCCeEEEe--ecCCCCeEEEEEcCCCCEEEEEEC-------CcEEEEEcCCCc
Q 004217          176 LWNASTAECIGS--RDFYRPIASIAFHASGELLAVASG-------HKLYIWRYNMRE  223 (767)
Q Consensus       176 IWDl~tg~~i~~--l~h~~~VtsVafSPdG~~LAsgSd-------d~V~VWDl~t~~  223 (767)
                      +||..+......  ......-..++..+||++++.|+.       +.+.+||..+.+
T Consensus       102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         102 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            999998776544  223334456778889999888873       128999987764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.99  E-value=0.32  Score=52.90  Aligned_cols=80  Identities=10%  Similarity=0.071  Sum_probs=54.7

Q ss_pred             CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeE--EEEEcCCCC-E
Q 004217          129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIA--SIAFHASGE-L  205 (767)
Q Consensus       129 GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~Vt--sVafSPdG~-~  205 (767)
                      |.+.-||+.+|+.+.++... .....-...- .+.+++.|+.||.++.+|.++|+.+.++.....+.  -+.|.-+|+ |
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            56888999999988766422 2222111222 46788889999999999999999999876433322  255667885 6


Q ss_pred             EEEEE
Q 004217          206 LAVAS  210 (767)
Q Consensus       206 LAsgS  210 (767)
                      |++.+
T Consensus       516 v~v~a  520 (560)
T d1kv9a2         516 VAIMA  520 (560)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66554

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.30  E-value=4.7  Score=41.54  Aligned_cols=173  Identities=6%  Similarity=-0.035  Sum_probs=108.5

Q ss_pred             eEEEEEEcCCCEEEEEeCCCeEEEEeCCC-----------CCCC--CCCCCeEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 004217           72 QIFEAGRDARRGLASWVEAESLHHLRPKY-----------CPLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT  138 (767)
Q Consensus        72 ~~~vA~sd~g~~LaSgs~DgsIrlWd~~t-----------~~L~--gH~~sVtsVaFSpDG~~LASgs~DGtVrVWDl~t  138 (767)
                      ..++++++..+.++.++.++ +.+...+.           .++.  ..-..|..++|+-|  .|+.. .++.+..++..+
T Consensus        39 ~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~~  114 (381)
T d1xipa_          39 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLEE  114 (381)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESSS
T ss_pred             cceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEeec
Confidence            44677778888888887775 55655321           0111  11125889999754  45554 455788888776


Q ss_pred             CeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEe------ecCCCCeEEEEEcCCCCEEEEEECC
Q 004217          139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS------RDFYRPIASIAFHASGELLAVASGH  212 (767)
Q Consensus       139 g~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~------l~h~~~VtsVafSPdG~~LAsgSdd  212 (767)
                      -........-...+..+.++|   ..++....++.+.++++.+++....      +.-...+.+++|++.|+.++++.++
T Consensus       115 l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~  191 (381)
T d1xipa_         115 LSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNG  191 (381)
T ss_dssp             TTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETT
T ss_pred             cccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCC
Confidence            443444333455688888877   5566777899999999998764332      2234678899999999988888665


Q ss_pred             cEEEE-EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          213 KLYIW-RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       213 ~V~VW-Dl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      ...+- ++.....+..   .......|.+|.|-.+..++++-+
T Consensus       192 ~~q~k~~i~~~~~~~~---p~~~~~~v~sI~WL~~~~F~vvy~  231 (381)
T d1xipa_         192 EMEKQFEFSLPSELEE---LPVEEYSPLSVTILSPQDFLAVFG  231 (381)
T ss_dssp             EEEEEEEECCCHHHHT---SCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             ceeeccCCCCccccCC---CcCCCcceeEEEEecCceEEEEEC
Confidence            54432 2332222110   112345688999997777655543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.99  E-value=2.6  Score=45.54  Aligned_cols=78  Identities=9%  Similarity=-0.011  Sum_probs=47.8

Q ss_pred             CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeE
Q 004217          172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (767)
Q Consensus       172 GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~L  250 (767)
                      |.|.-+|+.+++.+.......+..+-...-.+.++++|+.|+ ++.+|.++++.+..  ...+....-.-+.|..||+..
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~--~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN--FKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE--EECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEE--EECCCCceecceEEEECCEEE
Confidence            468888999999887765443332222233466777777555 99999999998761  112221222225666688754


Q ss_pred             E
Q 004217          251 L  251 (767)
Q Consensus       251 l  251 (767)
                      +
T Consensus       522 i  522 (571)
T d2ad6a1         522 I  522 (571)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.86  E-value=0.42  Score=52.05  Aligned_cols=80  Identities=13%  Similarity=0.093  Sum_probs=55.2

Q ss_pred             CeEEEEECCCCeEEEEEccCCCCc-EEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEE--EEEcCCCC-
Q 004217          129 HTVKIIDCQTGSCLKVLHGHRRTP-WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIAS--IAFHASGE-  204 (767)
Q Consensus       129 GtVrVWDl~tg~~l~~L~gH~~~V-~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~Vts--VafSPdG~-  204 (767)
                      |.+.-||+.+|+.+.+.+...... -.+..   .+.+++.|+.|+.++.+|.++|+.+.++.....+..  +.|.-+|+ 
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lst---agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT---AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEE---cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            357788999999887775432111 12332   567888899999999999999999998764433322  55666886 


Q ss_pred             EEEEEEC
Q 004217          205 LLAVASG  211 (767)
Q Consensus       205 ~LAsgSd  211 (767)
                      ||++.+.
T Consensus       534 Yv~v~~G  540 (573)
T d1kb0a2         534 YVSVAVG  540 (573)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            6666554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.67  E-value=1.4  Score=47.89  Aligned_cols=79  Identities=8%  Similarity=0.023  Sum_probs=53.0

Q ss_pred             CeEEEEECCCCeEEEEEccCCCCcE-EEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeE--EEEEcCCCC-
Q 004217          129 HTVKIIDCQTGSCLKVLHGHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIA--SIAFHASGE-  204 (767)
Q Consensus       129 GtVrVWDl~tg~~l~~L~gH~~~V~-sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~Vt--sVafSPdG~-  204 (767)
                      |.|.-+|+.+|+.+.+...-..... .+.-   .+.+++.|+.|+.++.+|.++|+.+.++.....+.  -+.|..+|+ 
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~T---agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq  520 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYT---KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEe---cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEE
Confidence            4677788888887766542211111 1222   35678889999999999999999999876444333  366667886 


Q ss_pred             EEEEEE
Q 004217          205 LLAVAS  210 (767)
Q Consensus       205 ~LAsgS  210 (767)
                      ||++..
T Consensus       521 Yi~v~~  526 (571)
T d2ad6a1         521 YIGSMY  526 (571)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            666554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.48  E-value=7.4  Score=38.96  Aligned_cols=163  Identities=13%  Similarity=0.056  Sum_probs=92.7

Q ss_pred             CCeEEEEeCCCCC-----C--CCC-----CCCeEEEEE--CCCCC-eEEEEe---CCCeEEEEECCCC--eE--EEEEcc
Q 004217           90 AESLHHLRPKYCP-----L--SPP-----PRSTIAAAF--SPDGK-TLASTH---GDHTVKIIDCQTG--SC--LKVLHG  147 (767)
Q Consensus        90 DgsIrlWd~~t~~-----L--~gH-----~~sVtsVaF--SpDG~-~LASgs---~DGtVrVWDl~tg--~~--l~~L~g  147 (767)
                      .|.|.++|++..+     +  .+.     .-.-..+.+  ..||+ +|++..   ...+|.||++...  +.  +..+..
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            4889999986541     1  111     012344444  45666 344442   3567888887543  22  223322


Q ss_pred             -CCCCcEEEEEccCCCcEEEEEeC---------------CCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEEC
Q 004217          148 -HRRTPWVVRFHPLNPTIIASGSL---------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG  211 (767)
Q Consensus       148 -H~~~V~sLafsP~dg~lLaSgS~---------------DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSd  211 (767)
                       .......+.+.. ++.+++|-..               -++..+|....++.......-...+.|+++||+++|+++..
T Consensus       147 ~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t  225 (340)
T d1v04a_         147 KLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAEL  225 (340)
T ss_dssp             TTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             ccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeC
Confidence             123567888888 7788887321               12344454444444333344456789999999998888873


Q ss_pred             --CcEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004217          212 --HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       212 --d~V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~LlaSg  254 (767)
                        ++|++|++....... ......-....-.+.+.+++..+.+++
T Consensus       226 ~~~~i~~y~~~~~~~l~-~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         226 LAHKIHVYEKHANWTLT-PLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             GGTEEEEEEECTTSCEE-EEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CCCeEEEEEeCCCcccc-eEEEecCCCCCCccEEecCCCEEEEEE
Confidence              459999987654333 112222345567888876443344444

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.19  E-value=3.1  Score=44.84  Aligned_cols=78  Identities=8%  Similarity=0.105  Sum_probs=48.2

Q ss_pred             CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeE
Q 004217          172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (767)
Q Consensus       172 GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~L  250 (767)
                      |.+.-||+.+++.+.......+...-..+-.|.+|++|+.|+ ++.+|.++++++.....-.+....  =+.|.-||+..
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~--P~ty~~~GkQY  534 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAA--PSTYMVDGRQY  534 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC--CEEEEETTEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCcccc--CEEEEECCEEE
Confidence            357788999999888766544333222334677888887555 999999999987722111111111  14555688743


Q ss_pred             E
Q 004217          251 L  251 (767)
Q Consensus       251 l  251 (767)
                      +
T Consensus       535 v  535 (573)
T d1kb0a2         535 V  535 (573)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=89.57  E-value=1.3  Score=47.96  Aligned_cols=78  Identities=6%  Similarity=0.049  Sum_probs=49.2

Q ss_pred             CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeE
Q 004217          172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (767)
Q Consensus       172 GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~L  250 (767)
                      |.+.-||+.+++.+..+........-...-.|.++++|+.++ ++.+|.++++.+.....-.....  .-+.+.-||+..
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~--~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVA--APMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS--CCEEEEETTEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccc--cCEEEEECCEEE
Confidence            568889999999998876554443333344566777777544 99999999998772111111111  124556688643


Q ss_pred             E
Q 004217          251 L  251 (767)
Q Consensus       251 l  251 (767)
                      +
T Consensus       516 v  516 (560)
T d1kv9a2         516 V  516 (560)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=89.10  E-value=3.8  Score=43.16  Aligned_cols=167  Identities=8%  Similarity=-0.083  Sum_probs=102.6

Q ss_pred             CCCEEEEEe-CCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCC--CeEEEEeCC------------------CeEEE
Q 004217           80 ARRGLASWV-EAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDG--KTLASTHGD------------------HTVKI  133 (767)
Q Consensus        80 ~g~~LaSgs-~DgsIrlWd~~t~~-----L~gH~~sVtsVaFSpDG--~~LASgs~D------------------GtVrV  133 (767)
                      +|++|+... .+..|-+.|+++.+     ...-...+..++..+++  .+++..+.+                  +.+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            677776665 67778888887653     12345567888877644  466665552                  23678


Q ss_pred             EECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCC---------------eE-----------------------E
Q 004217          134 IDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH---------------EV-----------------------R  175 (767)
Q Consensus       134 WDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DG---------------tV-----------------------r  175 (767)
                      +|.++.+...++.- .+....+.+++ +++++++.+.+.               .+                       .
T Consensus       178 ID~~tm~V~~QV~V-~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         178 VDADKWEVAWQVLV-SGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EETTTTEEEEEEEE-SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EecCCceEEEEeee-CCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            89999887766653 23566789999 888888876542               12                       3


Q ss_pred             EEECCCC---eEEEeecCCCCeEEEEEcCCCCEEEEEE--CCcEEEEEcCCCcccc-------CC-eEEecCCCCeEEEE
Q 004217          176 LWNASTA---ECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETS-------SP-RIVLRTRRSLRAVH  242 (767)
Q Consensus       176 IWDl~tg---~~i~~l~h~~~VtsVafSPdG~~LAsgS--dd~V~VWDl~t~~~~~-------~~-~~l~~h~~~VtsVa  242 (767)
                      +-|.++.   ..++.+.-......+.++|||+++++++  +..+.|+|+++-....       .. .......-.-...+
T Consensus       256 VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~  335 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA  335 (459)
T ss_dssp             EEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEE
T ss_pred             eecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccc
Confidence            3333321   1122222233455789999999999998  4559999997432210       00 01112233456778


Q ss_pred             EccCCC
Q 004217          243 FHPHAA  248 (767)
Q Consensus       243 FSPDG~  248 (767)
                      |+..|.
T Consensus       336 fd~~g~  341 (459)
T d1fwxa2         336 FDGRGN  341 (459)
T ss_dssp             ECTTSE
T ss_pred             cCCCce
Confidence            888774

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.97  E-value=6.1  Score=41.14  Aligned_cols=104  Identities=14%  Similarity=0.233  Sum_probs=60.2

Q ss_pred             CCeEEEEECCCCCeEEEEeCCCeEEEEECCCCeEEE--EEc------cCCCCcEEEEEccC---CCcEEEEEeC------
Q 004217          108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK--VLH------GHRRTPWVVRFHPL---NPTIIASGSL------  170 (767)
Q Consensus       108 ~sVtsVaFSpDG~~LASgs~DGtVrVWDl~tg~~l~--~L~------gH~~~V~sLafsP~---dg~lLaSgS~------  170 (767)
                      ..-++|+|.|||++|++--.+|.|++++..+++...  .+.      .-.+....|+|+|+   ++.+.++-..      
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            357799999999988876557999999987775432  221      11245678999983   2334443221      


Q ss_pred             C----Ce--EEEEECCCCe--E-----E-Eeec--CCCCeEEEEEcCCCCEEEEEEC
Q 004217          171 D----HE--VRLWNASTAE--C-----I-GSRD--FYRPIASIAFHASGELLAVASG  211 (767)
Q Consensus       171 D----Gt--VrIWDl~tg~--~-----i-~~l~--h~~~VtsVafSPdG~~LAsgSd  211 (767)
                      +    ..  +..+......  .     + ..+.  .......|.|.|||.+.++.++
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence            1    11  3333332211  1     1 1111  2234578999999986665553

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.95  E-value=5.5  Score=42.83  Aligned_cols=81  Identities=10%  Similarity=0.106  Sum_probs=52.1

Q ss_pred             CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCe-
Q 004217          172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAP-  249 (767)
Q Consensus       172 GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~-  249 (767)
                      |.|.-+|+.+++.+.......++..-..+..|.++++|+.|+ ++.+|.++++++....  ......-.-+.|..||+. 
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~--~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ--TGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE--CSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE--CCCCccccCEEEEECCEEE
Confidence            578889999999988876555444333445677887887554 9999999999877211  121111122567778864 


Q ss_pred             EEEEE
Q 004217          250 LLLTA  254 (767)
Q Consensus       250 LlaSg  254 (767)
                      +++.+
T Consensus       544 v~i~a  548 (582)
T d1flga_         544 LGVTV  548 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            44433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.91  E-value=0.64  Score=50.65  Aligned_cols=80  Identities=16%  Similarity=0.243  Sum_probs=56.1

Q ss_pred             CeEEEEECCCCeEEEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCe--EEEEEcCCCC-E
Q 004217          129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI--ASIAFHASGE-L  205 (767)
Q Consensus       129 GtVrVWDl~tg~~l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~V--tsVafSPdG~-~  205 (767)
                      |.|.-+|+.+|+.+.++..+.. +..-..+- .+.+++.|+.|+.++.+|.++|+.+.++.....+  .-+.|..+|+ |
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p-~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCC-CccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            5788899999998877764432 22111223 5678888999999999999999999987643332  2266777885 6


Q ss_pred             EEEEE
Q 004217          206 LAVAS  210 (767)
Q Consensus       206 LAsgS  210 (767)
                      |++.+
T Consensus       544 v~i~a  548 (582)
T d1flga_         544 LGVTV  548 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.75  E-value=7  Score=39.19  Aligned_cols=118  Identities=14%  Similarity=0.197  Sum_probs=85.4

Q ss_pred             CeEEEEECCCCeE-EEEEccCCCCcEEEEEccCCCcEEEEEeCCCeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEE
Q 004217          129 HTVKIIDCQTGSC-LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLA  207 (767)
Q Consensus       129 GtVrVWDl~tg~~-l~~L~gH~~~V~sLafsP~dg~lLaSgS~DGtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LA  207 (767)
                      ..|.|.|+.++.. .+.--    .-.+.-.+| ..+.++-=+ ..++.+||+++.+.++.+.....|..-.|-.+ +.|+
T Consensus        45 ~~VvIidl~n~~~~~Rrpi----~AdsAIMhP-~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~-~~L~  117 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPI----SADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVA  117 (327)
T ss_dssp             EEEEEEETTSTTSCEEEEC----CCSEEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSS-SEEE
T ss_pred             ceEEEEECCCCCcceeccc----chhhhhcCC-CCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCC-CEEE
Confidence            4788899976543 22211    122344789 777777655 66899999999999999988889988888754 5777


Q ss_pred             EEECCcEEEEEcCCCccccCCeEEecC----CCCeEEEEEccCCCeEEEEEe
Q 004217          208 VASGHKLYIWRYNMREETSSPRIVLRT----RRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       208 sgSdd~V~VWDl~t~~~~~~~~~l~~h----~~~VtsVaFSPDG~~LlaSgs  255 (767)
                      .-.+..|+-|++.....  +...+..|    ...|-.-..++|.++++..|=
T Consensus       118 lVT~taVYHW~~~g~s~--P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI  167 (327)
T d1utca2         118 LVTDNAVYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI  167 (327)
T ss_dssp             EECSSEEEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEE
T ss_pred             EEcCCceEEEcccCCCC--chhhhhhcccccCceEEEEEECCCCCEEEEEeE
Confidence            77888899999965432  23344444    456888889999999888663

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.26  E-value=13  Score=35.43  Aligned_cols=173  Identities=10%  Similarity=-0.036  Sum_probs=103.5

Q ss_pred             EEEEcCCCEEEE-EeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCeEEEE-eCCCeEEEEECCCCeEEEEEccC
Q 004217           75 EAGRDARRGLAS-WVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGH  148 (767)
Q Consensus        75 vA~sd~g~~LaS-gs~DgsIrlWd~~t~~----L~gH~~sVtsVaFSpDG~~LASg-s~DGtVrVWDl~tg~~l~~L~gH  148 (767)
                      +++....+.|+- -...+.|+..++....    +..-...+.++++..-++.|..+ ...+.|.+.+++.......+...
T Consensus        41 ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~  120 (263)
T d1npea_          41 LAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG  120 (263)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred             EEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEeccc
Confidence            444444454442 2456678777776442    22333578899998756666544 55679999998866544444444


Q ss_pred             CCCcEEEEEccCCCcEEEEEeCCCeEEEE--ECCCCeEEEee-cCCCCeEEEEEcCCCCEEEEEEC--CcEEEEEcCCCc
Q 004217          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLW--NASTAECIGSR-DFYRPIASIAFHASGELLAVASG--HKLYIWRYNMRE  223 (767)
Q Consensus       149 ~~~V~sLafsP~dg~lLaSgS~DGtVrIW--Dl~tg~~i~~l-~h~~~VtsVafSPdG~~LAsgSd--d~V~VWDl~t~~  223 (767)
                      ...+..++++|..+.++.+-...+..+||  ++......... ..-.....+++++.++.|.....  +.|...|+....
T Consensus       121 l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~  200 (263)
T d1npea_         121 LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (263)
T ss_dssp             CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             ccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCC
Confidence            46789999999555555554333333444  55543333332 23356689999998887777653  449888887654


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004217          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       224 ~~~~~~~l~~h~~~VtsVaFSPDG~~LlaS  253 (767)
                      ...   ...+. ....+|++.  +.+|..+
T Consensus       201 ~~~---v~~~~-~~P~~lav~--~~~lYwt  224 (263)
T d1npea_         201 RRK---VLEGL-QYPFAVTSY--GKNLYYT  224 (263)
T ss_dssp             EEE---EEECC-CSEEEEEEE--TTEEEEE
T ss_pred             eEE---EECCC-CCcEEEEEE--CCEEEEE
Confidence            322   22222 234577775  4556555

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.52  E-value=14  Score=35.12  Aligned_cols=177  Identities=9%  Similarity=-0.028  Sum_probs=104.4

Q ss_pred             eEEEEEEcCCCEEE-EEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECCCCCeEEEE-eCCCeEEEEECCCCeE
Q 004217           72 QIFEAGRDARRGLA-SWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSC  141 (767)
Q Consensus        72 ~~~vA~sd~g~~La-Sgs~DgsIrlWd~~t~--------~L~gH~~sVtsVaFSpDG~~LASg-s~DGtVrVWDl~tg~~  141 (767)
                      +..+.+....+.|+ +=...+.|...++...        .+......+..+++...++.|..+ ...+.|.+.+++....
T Consensus        32 ~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~  111 (266)
T d1ijqa1          32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR  111 (266)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE
T ss_pred             eEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceE
Confidence            34444544444443 2234555665554321        122233456788888756655544 5567899999987765


Q ss_pred             EEEEccCCCCcEEEEEccCCCcEEEEEe-CCCeEEEEECCCCeEEEeec-CCCCeEEEEEcCCCCEEEEEEC--CcEEEE
Q 004217          142 LKVLHGHRRTPWVVRFHPLNPTIIASGS-LDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HKLYIW  217 (767)
Q Consensus       142 l~~L~gH~~~V~sLafsP~dg~lLaSgS-~DGtVrIWDl~tg~~i~~l~-h~~~VtsVafSPdG~~LAsgSd--d~V~VW  217 (767)
                      ...+.........++++|..+.++.+-. ..+.|.-.++.......... .-.....+++++.++.|..+..  +.|...
T Consensus       112 ~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~  191 (266)
T d1ijqa1         112 KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI  191 (266)
T ss_dssp             EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEE
Confidence            5556666677899999995555555532 34567667776544444333 3356789999998887777763  448888


Q ss_pred             EcCCCccccCCeEEecC--CCCeEEEEEccCCCeEEEE
Q 004217          218 RYNMREETSSPRIVLRT--RRSLRAVHFHPHAAPLLLT  253 (767)
Q Consensus       218 Dl~t~~~~~~~~~l~~h--~~~VtsVaFSPDG~~LlaS  253 (767)
                      |+.......   .....  .....+|++.  +.+|..+
T Consensus       192 ~~dG~~~~~---~~~~~~~~~~p~~lav~--~~~ly~t  224 (266)
T d1ijqa1         192 DVNGGNRKT---ILEDEKRLAHPFSLAVF--EDKVFWT  224 (266)
T ss_dssp             ETTSCSCEE---EEECTTTTSSEEEEEEE--TTEEEEE
T ss_pred             ECCCCCEEE---EEeCCCcccccEEEEEE--CCEEEEE
Confidence            987654322   22222  2345567766  3445554

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=86.24  E-value=11  Score=38.02  Aligned_cols=174  Identities=8%  Similarity=0.040  Sum_probs=100.2

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCCCCC-CCCeEEEEEC------CCCCeEEEEeC--C--CeEEEEECCC-CeEEEEEccC-
Q 004217           82 RGLASWVEAESLHHLRPKYCPLSPP-PRSTIAAAFS------PDGKTLASTHG--D--HTVKIIDCQT-GSCLKVLHGH-  148 (767)
Q Consensus        82 ~~LaSgs~DgsIrlWd~~t~~L~gH-~~sVtsVaFS------pDG~~LASgs~--D--GtVrVWDl~t-g~~l~~L~gH-  148 (767)
                      ..++...+.+-|.+||++-.++.-. .+.++-|..-      -+..-|+.++.  +  .+|.+|.+.. ...+..+... 
T Consensus        41 SlI~gTdK~~Gl~vYdL~G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~  120 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLEGKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPN  120 (353)
T ss_dssp             CEEEEEETTSCCEEEETTCCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCSS
T ss_pred             cEEEEEcCcCCEEEEcCCCcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccccc
Confidence            3444444555588888864433322 2456655543      22223555553  2  3688887752 3334444321 


Q ss_pred             ------CCCcEEEEE--ccCCCc-EEEEEeCCCeEEEEECC---CC----eEEEeecCCCCeEEEEEcCCCCEEEEEECC
Q 004217          149 ------RRTPWVVRF--HPLNPT-IIASGSLDHEVRLWNAS---TA----ECIGSRDFYRPIASIAFHASGELLAVASGH  212 (767)
Q Consensus       149 ------~~~V~sLaf--sP~dg~-lLaSgS~DGtVrIWDl~---tg----~~i~~l~h~~~VtsVafSPdG~~LAsgSdd  212 (767)
                            ...++.+|+  ++.++. +++....+|.+..|.+.   .+    +.++.+.....+..+.+++....|..+-.+
T Consensus       121 ~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~  200 (353)
T d1h6la_         121 RPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEED  200 (353)
T ss_dssp             SCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETT
T ss_pred             cccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCc
Confidence                  124677777  664554 46667778999888663   23    345567778899999999999999999865


Q ss_pred             c-EEEEEcCCCccccCCeEEe----cCCCCeEEEEEcc--CCC-eEEEEEe
Q 004217          213 K-LYIWRYNMREETSSPRIVL----RTRRSLRAVHFHP--HAA-PLLLTAE  255 (767)
Q Consensus       213 ~-V~VWDl~t~~~~~~~~~l~----~h~~~VtsVaFSP--DG~-~LlaSgs  255 (767)
                      . |+.+++.............    .....+-.|+.-.  ++. +|+++..
T Consensus       201 ~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQ  251 (353)
T d1h6la_         201 EAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQ  251 (353)
T ss_dssp             TEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEG
T ss_pred             cceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcC
Confidence            4 7777665332211111111    1245677777553  444 6666654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=85.41  E-value=2.6  Score=45.85  Aligned_cols=81  Identities=9%  Similarity=0.018  Sum_probs=50.2

Q ss_pred             CeEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEECCc-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCe-
Q 004217          172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAP-  249 (767)
Q Consensus       172 GtVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgSdd~-V~VWDl~t~~~~~~~~~l~~h~~~VtsVaFSPDG~~-  249 (767)
                      |.|.-||+.+++.+....+..++..-..+-.|.+++.|+.|+ ++.+|.++++.+.....-.+...  .=+.|.-||+. 
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a--~P~tY~~dGkQY  530 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIG--YPMTYTHKGTQY  530 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS--CCEEEEETTEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCccc--CCeEEEECCEEE
Confidence            568889999999887765444443333344677887887555 99999999998772211111111  22445568874 


Q ss_pred             EEEEE
Q 004217          250 LLLTA  254 (767)
Q Consensus       250 LlaSg  254 (767)
                      +++.+
T Consensus       531 vav~~  535 (596)
T d1w6sa_         531 VAIYY  535 (596)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            44433

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.36  E-value=17  Score=36.69  Aligned_cols=180  Identities=11%  Similarity=0.015  Sum_probs=93.2

Q ss_pred             EEEEEEcCCCEEE-EEeCCC----eEEEEeCCCCCCCCCC---CCeEEEEECCCCCeEEEEeCC----------------
Q 004217           73 IFEAGRDARRGLA-SWVEAE----SLHHLRPKYCPLSPPP---RSTIAAAFSPDGKTLASTHGD----------------  128 (767)
Q Consensus        73 ~~vA~sd~g~~La-Sgs~Dg----sIrlWd~~t~~L~gH~---~sVtsVaFSpDG~~LASgs~D----------------  128 (767)
                      .-+..+.++++++ +.+..|    .|++.|+.++++....   .....++|++|++.|+....|                
T Consensus       128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~  207 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH  207 (430)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred             cceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCc
Confidence            3345666776666 433333    5999999998643211   112568899999988765433                


Q ss_pred             CeEEEEECCCCe--EEEEEccCC--CCcEEEEEccCCCcEEEEEe---CCCeEEEE--ECCCCe--------EEEeecCC
Q 004217          129 HTVKIIDCQTGS--CLKVLHGHR--RTPWVVRFHPLNPTIIASGS---LDHEVRLW--NASTAE--------CIGSRDFY  191 (767)
Q Consensus       129 GtVrVWDl~tg~--~l~~L~gH~--~~V~sLafsP~dg~lLaSgS---~DGtVrIW--Dl~tg~--------~i~~l~h~  191 (767)
                      ..|+.|.+.+..  -...+....  ..+..+..+. ++++++...   .+....+|  |+....        ........
T Consensus       208 ~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  286 (430)
T d1qfma1         208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF  286 (430)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS
T ss_pred             ceEEEEECCCCccccccccccccCCceEEeeeccC-CcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeeccc
Confidence            258888887653  233444333  3455667777 777665432   23344444  543321        11122222


Q ss_pred             CCeEEEEEcCCCCEEEEEECC----cEEEEEcCCCccccCCeEEec-CCCCeEEEEEccCCCeEEEEE
Q 004217          192 RPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLR-TRRSLRAVHFHPHAAPLLLTA  254 (767)
Q Consensus       192 ~~VtsVafSPdG~~LAsgSdd----~V~VWDl~t~~~~~~~~~l~~-h~~~VtsVaFSPDG~~LlaSg  254 (767)
                      ........+.++.+++....+    +|...++....... ...+.. +...+..-.+...+.+|++.-
T Consensus       287 ~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~-w~~vi~~~~~~~~~~~~~~~~~~lvl~~  353 (430)
T d1qfma1         287 EGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK-WKVLVPEHEKDVLEWVACVRSNFLVLCY  353 (430)
T ss_dssp             SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGG-CEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred             ccceEEEecCCceeecccCcccccceeEEecCCCCcccc-ceEEecccCcceeeeEEEEECCEEEEEE
Confidence            222222223334444444422    27777776554322 223333 444555555555556666554

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.01  E-value=3.4  Score=42.41  Aligned_cols=102  Identities=11%  Similarity=0.058  Sum_probs=64.1

Q ss_pred             cEEEEEccCCCcEEE-EEeCCC----eEEEEECCCCeEEEeecCCCCeEEEEEcCCCCEEEEEE-C--------------
Q 004217          152 PWVVRFHPLNPTIIA-SGSLDH----EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-G--------------  211 (767)
Q Consensus       152 V~sLafsP~dg~lLa-SgS~DG----tVrIWDl~tg~~i~~l~h~~~VtsVafSPdG~~LAsgS-d--------------  211 (767)
                      +..++++| ++++++ +-+.+|    +|+++|+.+++.+...-.......++|.+|++.|+-.. +              
T Consensus       127 ~~~~~~Sp-d~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         127 LRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecceEecC-CCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            44567899 666555 433343    69999999998765421122235688999999766443 1              


Q ss_pred             --CcEEEEEcCCCccccCCeEEecC--CCCeEEEEEccCCCeEEEEEe
Q 004217          212 --HKLYIWRYNMREETSSPRIVLRT--RRSLRAVHFHPHAAPLLLTAE  255 (767)
Q Consensus       212 --d~V~VWDl~t~~~~~~~~~l~~h--~~~VtsVaFSPDG~~LlaSgs  255 (767)
                        .+|+.|.+.+..... .......  ...+..+..+.|+++++....
T Consensus       206 ~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~  252 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (430)
T ss_dssp             CCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             CcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEee
Confidence              137888877664322 1122222  234677889999998887654